BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020274
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
++ D DG T LH A + ++ LL KGA+P+ KD DG TPLHYA + G + VKLL+
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
D N D++G TPLH A ++ +++I K+LL GAD + DG+T LD++ +G +
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNE 149
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 56/88 (63%)
Query: 216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 275
+ LL GA+P+ D DG TPLHYA + G + VKLL+ D N D++G TPLH A +
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 276 SRNRDIAKVLLINGADKSRKTKDGKTAL 303
+ +++I K+LL GAD + K DG+T L
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
D DG T LH A + ++ LL KGA+P+ D DG TPL A + G + VKLL K
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A + V+ LL +GA+P+ KD DG TPLH A + G + VKLL
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+ D N D++G TPLH+A ++ ++++ K+LL GAD + DG+T LD++ +G +
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 275
+ LL GA+ + D DG TPLH A + G + VKLL+ D N D++G TPLH+A +
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 79
Query: 276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+ ++++ K+LL GAD + K DGKT L ++ G
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 115
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
D DG T LH A + V+ LL +GA+P+ D DG TPL A + G + VKLL K
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A + ++ L+ KGA+ + KD DG TPLHYA + G + VKLL
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
I DVN D++G TPLH A + +++I K+L+ GAD + DG+T LD++ +G +
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Query: 313 FKSYDLAKLLK 323
++ KLL+
Sbjct: 150 ----EIVKLLE 156
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%)
Query: 216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 275
+ L+ GA+ + D DG TPLHYA + G + VKLLI DVN D++G TPLH A +
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+++I K+L+ GAD + K DG+T L + G
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A + ++ L+ KGA+ + D DG TPL A + G + VKLL
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 253 IK 254
K
Sbjct: 156 EK 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A + V+ L+ KGA+ + KD DG TPLH+A + G + VKLL
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
I DVN D++G TPLH A ++ ++++ K+L+ GAD + DG+T LD++ +G +
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 275
+ L+ GA+ + D DG TPLH+A + G + VKLLI DVN D++G TPLH A +
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 79
Query: 276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+ ++++ K+L+ GAD + K DG+T L + G
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A + V+ L+ KGA+ + D DG TPL A + G + VKLL
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 253 IK 254
K
Sbjct: 156 EK 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DKDG T LH A ++ LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D +G+TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G +
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLK 323
DLA++L+
Sbjct: 160 ----DLAEILQ 166
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + KD DG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + +
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL GAD + K KDG T L ++ G
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 125
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 YTPLHLAAREGH 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D DG T LH A ++ LL+ GA+ + D G TPLH A G ++ V++L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K+ DVN DN+G TPLH+A + + +I +VLL +GAD + + K GKTA D+S+ G +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLK 323
DLA++L+
Sbjct: 160 ----DLAEILQ 166
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D DG TPLH A G ++ V++L+K DVN +D G TPLH+A + +
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL +GAD + DG T L ++ YG
Sbjct: 93 LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGH 125
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN DN+G+TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 300 KTALDMS------------LCYGRDFKSYD 317
T L ++ L +G D +YD
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D +GLT LH A + ++ LL+ GA+ + D G TPLH A G ++ V++L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K+ DVN D GWTPLH+A S +I +VLL +GAD + + G TA D+S+ G++
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQE 151
Query: 313 FKSYDLAKLLK 323
DLA++L+
Sbjct: 152 ----DLAEILQ 158
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D +G TPLH A G ++ V++L+K DVN +D+ G TPLH+A +
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL +GAD + + G T L ++ G+
Sbjct: 85 LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ 117
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL + Q+ +++ D G+T LH A ++ LL+ GA+ +
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
D G TPLH A G ++ V++L+K+ DVN D G T I+I D+A++L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DKDG T LH A ++ LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D +G+TPLH+A + + +I +VLL GAD + + K GKT D+++ G +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 313 FKSYDLAKLLK 323
D+A++L+
Sbjct: 148 ----DIAEVLQ 154
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + KD DG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL GAD + K KDG T L ++ G
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 69 YTPLHLAAREGH 80
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
+ PL + +++ DKDG T LH A ++ LL+ GA+ +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIK 254
+D G TP A++ G ++L K
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DKDG T LH A ++ LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D +G+TPLH+A + + +I +VLL GAD + + K GKT D+++ G +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
Query: 313 FKSYDLAKLLK 323
D+A++L+
Sbjct: 148 ----DIAEVLQ 154
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + KD DG TPLH A + G ++ V++L+K DVN D +G+TPLH+A + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL GAD + K KDG T L ++ G
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + K KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 69 YTPLHLAAREGH 80
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
+ PL + +++ DKDG T LH A ++ LL+ GA+ +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIK 254
+D G TP A+ G ++L K
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD GLT LH A + ++ LL+ GA+ D G TPLH A G ++ V++L
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+KY DVN D G TPLH+A + +I +VLL GAD + + K GKTA D+S+ G +
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAK 320
DLAK
Sbjct: 160 ----DLAK 163
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEA 214
NA N G PL +S + +D+ D G T LH A +
Sbjct: 41 NAVDNTG------LTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLE 94
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
++ LL+ GA+ + D G+TPLH A G ++ V++L+KY DVN D G T I+I
Sbjct: 95 IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 275 QSRNRDIAK 283
+ N D+AK
Sbjct: 155 DNGNEDLAK 163
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K+ DV+ AD G+TPLH+A + +
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL GAD + G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++LI DVN DN G TPLH+A S + +I +VLL +GAD G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 300 KTALDMS------------LCYGRDFKSYDL 318
T L ++ L YG D ++D+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDM 111
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ + KD G TPLH A + G ++ V++L
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN +D+ G+TPLH+A + + +I +VLL NGAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + +D G TPLH A G ++ V++L+K DVN D+ G TPLH+A + +
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL NGAD + G T L ++ G
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGH 125
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D GWTPLH+A + +I +VLL NGAD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 VTPLHLAARRGH 92
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
+++ D G T LH A IG E ++ LL+ GA+ + +D DG TPLH A G ++ V++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPE-IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
L+KY DVN D G TPLH+A + +I +VLL +GAD + + K GKTA D+S+ G
Sbjct: 99 LLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 312 DFKSYDLAKLLKIL 325
+ DLA++L+ L
Sbjct: 159 E----DLAEILQKL 168
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G+TPLH A +G + V++L+K+ DVN D +GWTPLH+A + +
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL GAD + + G T L ++ G
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D++G TPLH+A + +I +VLL +GAD + + DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 300 KTALDMS------------LCYGRDFKSYD 317
T L ++ L YG D + D
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 33/121 (27%)
Query: 165 TAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA 224
T W PL + + +++ D GLT LH
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLH------------------- 118
Query: 225 NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 284
A G ++ V++L+K+ DVN D G T I+I + N D+A++
Sbjct: 119 --------------LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 285 L 285
L
Sbjct: 165 L 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G+T LH + +I LL+ A+ + D G TPLH A G ++ V++L+KY DV
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 319
N D +G+TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G + DLA
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE----DLA 162
Query: 320 KLLKIL 325
++L+ L
Sbjct: 163 EILQKL 168
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH V G ++ +++L+KY DVN +D GWTPLH+A +
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL GAD + G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+ + + + +I +VLL AD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 300 KTALDMS------------LCYGRDFKSYD 317
T L ++ L YG D + D
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 33/118 (27%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
W PL + ++++D G T LH
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLH---------------------- 118
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
A + G ++ V++L+KY DVN D G T I+I + N D+A++L
Sbjct: 119 -----------LAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D GLT LH A ++ LL+ GA+ + D G+TPLH A +G ++ V++L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K+ DVN D G TPLH+A + +I +VLL +GAD + + K GKTA D+S+ G +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K+ DVN D G TPLH+A +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL +GAD + G T L ++ G
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+A + +I +VLL +GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 STPLHLAALIGH 92
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 33/116 (28%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL L + +++VD G T LH A I
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-------------------- 122
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+G ++ V++L+K+ DVN D G T I+I + N D+A++L
Sbjct: 123 -------------MGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D DG TPLH A Q+G ++ V++L+KY DVN DN G TPLH+A +
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
++++D+DGLT LH A +G E ++ LL+ GA+ + +D G TPLH A G ++ V++
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLE-IVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
L+K+ DVN D G T I+I + N D+A++L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G TPLH+A Q + +I +VLL GAD + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 ITPLHLAAIRGH 92
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G+T LH A I ++ LL+ GA+ + +D G T ++ G ++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 253 IKYN 256
K N
Sbjct: 133 QKLN 136
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D GLT LH A ++ LL+ GA+ + D G+TPLH A +G ++ V++L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K+ DVN D G TPLH+A + +I +VLL +GAD + + K GKTA D+S+ G +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K+ DVN D G TPLH+A +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL +GAD + G T L ++ G
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+A + +I +VLL +GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 STPLHLAALIGH 92
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 33/116 (28%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL L + +++VD G T LH A I
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-------------------- 122
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+G ++ V++L+K+ DVN D G T I+I + N D+A++L
Sbjct: 123 -------------MGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
++ D G T LH A ++ LLR GA+ + D +G TPLH A +G ++ V++L+
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
KY DVN D G TPL++A + +I +VLL +GAD + + K GKTA D+S+ D
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI----DI 144
Query: 314 KSYDLAKLLK 323
+ DLA++L+
Sbjct: 145 GNEDLAEILQ 154
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A VG ++ V++L++ DVN D G TPLH+A +
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL GAD + K G T L ++ +G
Sbjct: 81 LEIVEVLLKYGADVNAKDATGITPLYLAAYWGH 113
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
+++VD +G T LH A +G E ++ LL+ GA+ + KD G TPL+ A G ++ V++
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLE-IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
L+K+ DVN D G T I+I N D+A++L
Sbjct: 120 LLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ D N D+ G TPLH+A + +I +VLL NGAD + +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 69 TTPLHLAASLGH 80
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ + D GATPLH A G ++ V++L
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K+ DVN D EG+TPLH+A + +I +VLL GAD + + K GKTA D+S+ G +
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A + G ++ V++L+KY DVN DN G TPLH+A + +
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL +GAD + K +G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+A ++ + +I +VLL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 ATPLHLAADNGH 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A I ++ LL+ GA+ + D G TPLH A G ++ V++L
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D G+TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + +D G TPLH A G ++ V++L+K+ DVN AD G TPLH+A +
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL NGAD + G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D+ G TPLH+A + +I +VLL +GAD + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 300 KTALDMSLCYGR 311
T L ++ YG
Sbjct: 81 DTPLHLAALYGH 92
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 33/116 (28%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL L + +++ D G T LH
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLH------------------------ 118
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
A G ++ V++L+KY DVN D G T I+I + N D+A++L
Sbjct: 119 ---------LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ + D G TPL A G ++ V++L
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D EG TPLH+A + +I +VLL NGAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
W PL + + +++VD G+T L A + ++ LL+ GA+ +
Sbjct: 48 WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
D +G TPLH A G ++ V++L+K DVN D G T I+I + N D+A++L
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + +D G TPLH A G ++ V++L+K DVN D+ G TPL +A +
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+I +VLL NGAD + +G T L ++ +G
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D GWTPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 300 KTALDMSLCYGR 311
T L ++ +G
Sbjct: 81 MTPLRLAALFGH 92
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ + D G TPLH A G ++ V++L
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D+ G+TPLH+A + +I +VLL +GAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K DVN D+ G TPLH+A +
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
++ +VLL NGAD + +G T L ++ G
Sbjct: 93 LEVVEVLLKNGADVNANDHNGFTPLHLAANIGH 125
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN +D+ GWTPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 VTPLHLAADRGH 92
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
Query: 193 IDSVDKDGLTALHKAI-IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
+++ D G T LH A +G E ++ LL+ GA+ + D G+TPLH A + G ++ V++
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLE-IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
L+KY DVN D G TPLH+A + + +I +VLL GAD + + K GKTA D+S+ G
Sbjct: 99 LLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 312 DFKSYDLAKLLK 323
+ DLA++L+
Sbjct: 159 E----DLAEILQ 166
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + +D G TPLH A +VG ++ V++L+K DVN D G TPLH+A + +
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL GAD + G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 300 KTALDMS------------LCYGRDFKSYD 317
T L ++ L YG D + D
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADD 110
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ + D G+TPLH A G ++ V++L
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D+ G TPLH+A + +I +VLL GAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K DVN D G TPLH+A +
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMS------------LCYGRDFKSYD 317
+I +VLL NGAD + K +G T L ++ L YG D + D
Sbjct: 93 LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN AD GWTPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 300 KTALDMSLCYGR 311
T L ++ +G
Sbjct: 81 STPLHLAAHFGH 92
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D G T LH A ++ LL+ GA+ D G TPLH A G ++ V++L
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+K DVN D++G TPLH+A + +I +VLL +GAD + + K GKTA D+S+ G +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A G ++ V++L+K+ DV+ +D G+TPLH+A +
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+I +VLL NGAD + DG T L ++ +G
Sbjct: 93 LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN ADN G TPLH+A S + +I +VLL +GAD G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 300 KTALDMSLCYGR 311
T L ++ +G
Sbjct: 81 YTPLHLAAYWGH 92
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T LH A + +V+ +LL+ GA+ H KD G PLH A G + +LL+K+ VNV
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
AD +TPLH A +I K+LL +GAD ++K +DG T LD+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 15 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 298 DGKTALDMSLCYGRDFKSYDLAKLL 322
G L + YG Y++A+LL
Sbjct: 74 GGLVPLHNACSYGH----YEVAELL 94
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T LH A + +V+ +LL+ GA+ H KD G PLH A G + +LL+K+ VNV
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
AD +TPLH A +I K+LL +GAD ++K +DG T LD+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 17 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 298 DGKTALDMSLCYGRDFKSYDLAKLL 322
G L + YG Y++A+LL
Sbjct: 76 GGLVPLHNACSYGH----YEVAELL 96
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T LH A + +V+ +LL+ GA+ H KD G PLH A G + +LL+K+ VNV
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
AD +TPLH A +I K+LL +GAD ++K +DG T LD+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGW--TPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
A + G +++VK L VN D EG TPLH A + + LL +GAD K K
Sbjct: 19 AAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 298 DGKTALDMSLCYGRDFKSYDLAKLL 322
G L + YG Y++A+LL
Sbjct: 78 GGLVPLHNACSYGH----YEVAELL 98
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
+G T LH A V+ LL GA+ + KD +G TPLH A + G ++ VKLL++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
VN D G TPLH+A ++ + ++ K+LL GAD + K K+G+T L ++ G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 60/98 (61%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DK+G T LH A V+ LL GA+ + KD +G TPLH A + G ++ VKLL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
++ DVN D G TPLH+A ++ + ++ K+LL GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A ++ V++L+K+ DVN DN+G TPLH+A +
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D+ G T LH A ++ LL+ GA+ + D DG+TPLH A G ++ V++L
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+K+ DVN D G T I+I + N D+A++L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G TPLH+A + +I +VLL +GAD + DG
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 300 KTALDMSLCYGR 311
T L ++ +G
Sbjct: 81 STPLHLAALFGH 92
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A + G ++ V++L+K+ DVN +D+ G TPLH+A +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++++D G+T LH A ++ LL+ GA+ + D G TPLH A VG ++ V++L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
++Y DVN D G T I+I + N D+A++L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 300 KTALDMSLCYGR 311
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
A W PL + + +++V+++G T LH A + + LL GAN
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
P KD AT +H A G ++ V +L+ Y N+ D EG TPLH+A + AK L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
+ GA + K+ KT L ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVA 212
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D+D TALH A ++ LL+ G + KD G +PLH A G + VK L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
VN + G TPLH A +IA +LL GA+ K TA+ + G
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + KD G TPL+ A G ++ V++L+K DVN D G+TPLH+A +
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+IA+VLL +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKL 135
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ D+ GLT L+ A ++ LL+ GA+ + D G TPLH A +G ++ ++L
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+K+ DVN D G T I+I + N D+A++L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPL++A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 300 KTALDMSLCYGR 311
T L ++ G
Sbjct: 81 FTPLHLAAFIGH 92
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
A W PL + + +++V+++G T LH A + + LL GAN
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
P KD AT +H A G ++ + +L+ Y N+ D EG TPLH+A + AK+L
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 286 LINGADKSRKTKDGKTALDMS 306
+ GA + K+ KT L ++
Sbjct: 193 VSQGASIYIENKEEKTPLQVA 213
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D+D TALH A ++ LL+ G + KD G +PLH A G + VK L+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
VN + G TPLH A +IA +LL GA+ K TA+ + G
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
A W PL + + +++V+++G T LH A + + LL GAN
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
P KD AT +H A G ++ + +L+ Y N+ D EG TPLH+A + AK+L
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
+ GA + K+ KT L ++
Sbjct: 192 VSQGASIYIENKEEKTPLQVA 212
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D+D TALH A ++ LL+ G + KD G +PLH A G + VK L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
VN + G TPLH A +IA +LL GA+ K TA+ + G
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
A W PL + +++V+++G T LH A + + LL GAN
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
P KD AT +H A G ++ V +L+ Y N+ D EG TPLH+A + AK L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
+ GA + K+ KT L ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVA 212
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D+D TALH A ++ LL+ G + KD G +PLH A G + VK L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
VN + G TPLH A +IA +LL GA+ K TA+ + G
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D++++ G TAL + G A+ LL++GA+P+V+D G +P+H A + G + ++K+L+
Sbjct: 36 DALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
++ DVNV D G P+H+A+Q + + L +D R+ G T L+++L G
Sbjct: 95 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG--- 150
Query: 314 KSYDLAKLLK 323
+ DL +L+
Sbjct: 151 -AQDLVDILQ 159
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A + G ++ V++L+K+ DVN +D G TPLH+A +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++++D G+T LH A ++ LL+ GA+ + D G TPLH A VG ++ V++L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
++Y DVN D G T I+I + N D+A++L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 300 KTALDMSLCYGR 311
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D++++ G TAL + G A+ LL++GA+P+V+D G +P+H A + G + ++K+L+
Sbjct: 30 DALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
++ DVNV D G P+H+A+Q + + L +D R+ G T L+++L G
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG--- 144
Query: 314 KSYDLAKLLK 323
+ DL +L+
Sbjct: 145 -AQDLVDILQ 153
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L GA+ + D G TPLH A +G ++ V++L+K DVN N G TPLH+A + +
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
+++ D G T LH A++G E ++ LL+ GA+ + G TPLH A ++ V++
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLE-IVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
L+K+ DVN D G T I+I + N D+A++L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L DVN D G TPLH+A + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 300 KTALDMS 306
+T L ++
Sbjct: 81 RTPLHLA 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + D G TPLH A + G ++ V++L+K+ DVN D G TPLH+A +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++++D G+T LH A ++ LL+ GA+ + +D G TPLH A VG ++ V++L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
++Y DVN D G T I+I + N D+A++L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D+ G TPLH+A + + +I +VLL +GAD + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 300 KTALDMSLCYGR 311
+T L ++ G
Sbjct: 81 RTPLHLAATVGH 92
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G TAL +G E + LL +GANP +KD G +H A + G + +++ L+++ DV
Sbjct: 38 GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
N+ DNEG PLH+A + + + + L+ + A + G TA D++ YGR+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D D+ G +H A + + LL A+ +++D +G PLH A + G ++ V+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
K+ +V +++G T +A ++ ++ NGA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G TAL +G E + LL +GANP +KD G +H A + G + +++ L+++ DV
Sbjct: 38 GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
N+ DNEG PLH+A + + + + L+ + A + G TA D++ YGR+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D D+ G +H A + LL A+ +++D +G PLH A + G ++ V+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
K+ +V +++G T +A ++ ++ NGA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G TAL +G E + LL +GANP +KD G +H A + G + +++ L+++ DV
Sbjct: 38 GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
N+ DNEG PLH+A + + + + L+ + A + G TA D++ YGR+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D D+ G +H A + LL A+ +++D +G PLH A + G ++ V+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
K+ +V +++G T +A ++ ++ NGA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G TAL +G E + LL +GANP +KD G +H A + G + +++ L+++ DV
Sbjct: 38 GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
N+ DNEG PLH+A + + + + L+ + A + G TA D++ YGR+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D D+ G +H A + LL A+ +++D +G PLH A + G ++ V+ L+
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
K+ +V +++G T +A ++ ++ NGA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.9 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
+G T LH A V+ LL GA+ + KD +G TPLH A + G ++ VKLL++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
VN D G TPLH+A ++ + ++ K+LL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 65.5 bits (158), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
+G TPLH A + G ++ VKLL++ DVN D G TPLH+A ++ + ++ K+LL GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 292 KSRKTKDGKTALDMS 306
+ K K+G+T L ++
Sbjct: 61 VNAKDKNGRTPLHLA 75
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DK+G T LH A V+ LL GA+ + KD +G TPLH A + G ++ VKLL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 253 IK 254
++
Sbjct: 88 LE 89
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D++++ G TAL + G AV LL++GA+P+V+D G +P+H A + G + ++K+L+
Sbjct: 38 DALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
++ DVN D+ G P+H+AI+ + + L +D + G T L+++
Sbjct: 97 EHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELA 148
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
L+K NV D G +P+H A ++ D KVL+ +GAD + G + +++ G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T LH A + ++ LL+ GA+ H KD G PLH A G + +LL+K+ VN
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS--------LCYGRDF 313
D +TPLH A ++ +LL +GAD + GK+A+DM+ L Y +F
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY--EF 177
Query: 314 KSY---------DLAKLLKILPVE 328
K + DLAK+ K L +E
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALE 201
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 202 TALHKAIIG---KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
TALH A+ K++ V LLRKGAN + K+ D TPLH A + +++L K+
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
+N D+ G T LH A + + ++LL G+D S + G TA M
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ +KD +T LH A V+ L + GA + D G T LH A G +Q+ +LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ Y D ++ +G+T A Q N + ++L
Sbjct: 300 LSYGSDPSIISLQGFT----AAQMGNEAVQQIL 328
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 308
+ LL NV+ + +D TPLH+A I ++LL +GAD K K G L +
Sbjct: 41 MALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100
Query: 309 YGRDFKSYDLAKLL 322
YG Y++ +LL
Sbjct: 101 YGH----YEVTELL 110
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 235 TPLHYAV---QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
T LH AV Q +LL++ +VN + + TPLH+A + + D+ +VL +GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 292 KSRKTKDGKTALDMSLCYGR 311
+ G+TAL + G
Sbjct: 273 MNALDSLGQTALHRAALAGH 292
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D++++ G TAL + G AV LL++GA+P+V+D G +P+H A + G + ++K+L+
Sbjct: 36 DALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
++ DVN D+ G P+H+AI+ + + L +D + G T L+++
Sbjct: 95 EHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELA 146
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
L+K NV D G +P+H A ++ D KVL+ +GAD + G + +++ G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + +D G TPLH A ++ V++L+K DVN D G TPLH+ +
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
+I +VLL +GAD + + K GKTA D+S+ G + DLA++L+ L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ DK GLT LH A + ++ LL+ GA+ + D G TPLH G ++ V++L
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+K+ DVN D G T I+I + N D+A++L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D G TPLH+A + + +I +VLL NGAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 300 KTALDMSLCYGR 311
+T L + YG
Sbjct: 81 ETPLHLVAMYGH 92
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G TAL +G E + LL +GANP +KD G +H A + G + +++ L++ DV
Sbjct: 38 GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
N+ DNEG PLH+A + + + + L+ + A + G TA D++ YGR+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
D D+ G +H A + LL A+ +++D +G PLH A + G ++ V+ L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
K+ +V +++G T +A ++ ++ NGA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
I+ D++G T L A + AV+ LL+ GA+P + + L A G VK+L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
+ VDVN D G TPL A+ + K+LL +GAD + +T G ++D+++ G R
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 312 DFKSYDLAKLLKIL 325
+ + LLK+L
Sbjct: 165 SVQQVIESHLLKLL 178
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
G + +H G M + I+ +N D EG+TPL A + + LL NGA
Sbjct: 17 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 76
Query: 291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
D K ++AL ++ G D+ K+L
Sbjct: 77 DPQLLGKGRESALSLACSKGYT----DIVKML 104
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
I+ D++G T L A + AV+ LL+ GA+P + + L A G VK+L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
+ VDVN D G TPL A+ + K+LL +GAD + +T G ++D+++ G R
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 312 DFKSYDLAKLLKIL 325
+ + LLK+L
Sbjct: 147 SVQQVIESHLLKLL 160
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
+H G M + I+ +N D EG+TPL A + + LL NGAD
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 297 KDGKTALDMSLCYGRDFKSYDLAKLL 322
K ++AL ++ G D+ K+L
Sbjct: 65 KGRESALSLACSKGYT----DIVKML 86
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ +DG + LH A + + +I LL+ GAN ++ D A PLH A Q G Q VK L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
+ N N D G TPL A + ++ +LL +GA + G TAL
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
+ D LH A V+ LL A P+ KD G TPL YA G + V LL+++
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 316
+N ++N+G T LH A+ ++ + ++LL++GA K +TA+D C ++ K
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD---CAEQNSK-- 230
Query: 317 DLAKLLKILP 326
+ +LL+++P
Sbjct: 231 -IMELLQVVP 239
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 223 GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
G +V DG++PLH A G + LL+K+ + + + PLH+A Q + +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 283 KVLLINGADKSRKTKDGKTALDMSLCYG 310
K LL + A ++K G T L + C G
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPL-IYACSG 162
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
I+ D++G T L A + AV+ LL+ GA+P + + L A G VK+L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
+ VDVN D G TPL A+ + K+LL +GAD + +T G ++D+++ G R
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 312 DFKSYDLAKLLKIL 325
+ + LLK+L
Sbjct: 149 SVQQVIESHLLKLL 162
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
G + +H G M + I+ +N D EG+TPL A + + LL NGA
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
D K ++AL ++ G D+ K+L
Sbjct: 61 DPQLLGKGRESALSLACSKGYT----DIVKML 88
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
++ ++ + +P + + +G T LH AV G + VK L+++ V+VN AD++GWTPLH A
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 275 QSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
N + K L+ +GA T D +TA D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
+ +G+TALH A+ ++ L++ G N + D DG TPLH A +Q K L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
G V+ +I D ++ ++EG T LH A+ + + +I K L+ G + + DG T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
++ ++ + +P + + +G T LH AV G + VK L+++ V+VN AD++GWTPLH A
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 275 QSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
N + K L+ +GA T D +TA D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
+ +G+TALH A+ ++ L++ G N + D DG TPLH A +Q K L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
G V+ +I D ++ ++EG T LH A+ + + +I K L+ G + + DG T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
KDG T LH A + LL KGA+ + + DG TPLH A + G + VKLL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
DVN +G TP H+A ++ + +I K+L GAD
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
DG TPLH A + G + VK L+ DVN +G TPLH+A ++ + +I K+LL GAD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
+ ++KDG T ++ G +++ KLL
Sbjct: 68 VNARSKDGNTPEHLAKKNGH----HEIVKLL 94
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++ KDG T LH A ++ LL KGA+ + + DG TP H A + G + VKLL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 253 IKYNVDVNV 261
DVN
Sbjct: 95 DAKGADVNA 103
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
+K GLT LH V L++ G G TPLH A G ++ VK L+++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
DVN G++PLH A Q + DI +LL NGA + + DG T L ++
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T LH A V +LL+ A + K D TPLH A ++G VKLL++ N + N+
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
A G TPLHIA + + + LL A ++ TK G T L ++ YG+
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
+ PL ++R ++ K+GLT LH A+ ++ LL +G +PH
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
+G TPLH A + ++ + L++Y N +G TPLH+A Q + ++ +LL
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 288 NGADKSRKTKDGKTALDM 305
A+ + K G T L +
Sbjct: 267 KQANGNLGNKSGLTPLHL 284
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
+ PL Q+ ++ G+T LH A +++ LL K AN +
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
+ + G TPLH Q G + +LIK+ V V+ G+TPLH+A N + K LL
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 288 NGADKSRKTKDGKTALDMSLCYGR 311
+ AD + KTK G + L + G
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGH 356
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEA 214
NA PNL +TA PL + + K G T LH A K
Sbjct: 103 NANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
V LL + A+P+ +G TPLH AV + VKLL+ + G+TPLHIA
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220
Query: 275 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+ ++A+ LL G + ++ G T L ++ G
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
+G T LH A + V LL+ G + + + G TPLH A Q G + V LL+ +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
N+ + G TPLH+ Q + +A VL+ +G T+ G T L ++ YG
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%)
Query: 201 LTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LT LH A ++ +LL++GA+P+V + TPLH A + G + K L++ VN
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 261 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+ TPLH A + + ++ K+LL N A+ + T G T L ++ G
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 125
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 154 QNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKE 213
+ A+PN+ + PL + +++ KD T LH A
Sbjct: 36 RGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93
Query: 214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
++ LL ANP++ G TPLH A + G +++V L++ +G+TPLH+A
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Query: 274 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
+ +A++LL A + K+G T L +++ + + D+ KLL
Sbjct: 154 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH----NNLDIVKLL 198
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ + G T LH A ++ LL+ A+ + K G +PLH A Q G V LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 253 IKYNVDVNVADNEGWTPLHIA 273
+K N ++G TPL IA
Sbjct: 364 LKNGASPNEVSSDGTTPLAIA 384
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
+ PL + I+ +++ K G + LH+A +++ LL+ GA+P+
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 228 VKDGDGATPLHYAVQVG 244
DG TPL A ++G
Sbjct: 372 EVSSDGTTPLAIAKRLG 388
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
DG L G E V+ LL +GA+ + + DG T LH A + VK L++ +
Sbjct: 40 DGAVFLAACSSGDTEEVL-RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
+N DNEGW PLH A DIA+ L+ GA +G T LD+
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
G T LH A G + +KLLI+ DVN+ D +GWTPLH A + ++L+ N D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 293 SRKTKDGKTALDMS 306
K G+TA D++
Sbjct: 259 EAVNKVGQTAFDVA 272
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
I+ + DGLTALH+A I ++ L+ GAN + D +G PLH A G + + L
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 253 IKYNVDVNVADNEGWTPLHI 272
I V ++EG TPL I
Sbjct: 126 ISQGAHVGAVNSEGDTPLDI 145
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
K G TALH A V+ L++ + ++KD DG TPLH A G ++ ++L++
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 258 DVNVADNEGWTPLHIA 273
D+ + G T +A
Sbjct: 257 DMEAVNKVGQTAFDVA 272
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G T LH A I + +LL+ G++P+VKD G TPLH A G ++ V+LL+++ V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
N + +PLH A ++ + DI K+LL GA ++
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D G T LH+A V+ LL+ A + +PLH A + G + VKLL+ Y
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 257 VDVNVADNEGWTPL 270
N + G P+
Sbjct: 100 ASRNAVNIFGLRPV 113
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D +G TAL A+ + + LL KG+N + KD G TPL +++ G + L+++
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
+VN + EG TPL +A + +I K LL GAD S + G TA + +GR
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
T L A + E I L+ KD +G+T L +AV+ + + L+ +VN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
D G TPL +I +++ LL +GA+ + + +G+T L ++ YGR
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DVN D +G+TPLH+A + + +I +VLL GAD + + K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 300 KTALDMSLCYGRDFKSYDLAKLLK 323
KTA D+S+ G + DLA++L+
Sbjct: 69 KTAFDISIDNGNE----DLAEILQ 88
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ + KD DG TPLH A + G ++ V++L+K DVN D G T I+I + N
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 279 RDIAKVL 285
D+A++L
Sbjct: 81 EDLAEIL 87
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKLLIKY 255
DK+ +T LH A I + ++ + + KGA GD +TPLH+A + G + V L+KY
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
D ++ D EG + +H+A Q + I L+ G D ++G T L
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV-QVGAMQSVKLLIK 254
+D +G + +H A +++++L+ KG + + D +G TPL +A + ++ +LL+
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 255 YNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
+NV VN+ D T LH A+ + N + +LL GA+ + G++ALD++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
TALH A++ VIS LL GAN ++ G + L A Q
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 167 KWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP 226
K PL + + ID+ +D T L +A + +L++ GA
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 227 HVKDGDGATPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
KD +G+T LH A + G + V+ LL +DVN D+ GWTP+ A + ++ D+ K+L
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 286 LINGAD 291
L G+D
Sbjct: 131 LSKGSD 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D G T + A K ++ LL KG++ +++D + LH+A G + ++L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
+ D++ + G +PLHIA + D + L +D + K K+G+T L + +
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Query: 313 FKSYDLAKLLK 323
+ + ++K L+
Sbjct: 224 WSALQMSKALQ 234
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
+ LH A + L++ GAN D TPL A + +++VK LIK V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL 321
D EG T LH+A + + ++ + LL NG DG + + ++K DL KL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT---PMIWATEYKHVDLVKL 129
Query: 322 L 322
L
Sbjct: 130 L 130
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D G + LH A + AV+ L+ +GA +V + TPLH A G V+ L
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
++Y D+N + G PLH A +A+ L+ NGA S K G+ +D
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
D G +PLH+A + G V++LI +NV + TPLH+A +RDI + LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 290 ADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
AD + + G L + +G+D + DL
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
D+N D+ G++PLH A + + ++L++ GA + + T L ++ +G
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
G + LH A + LLR G + + TPLH A G V++L+K+ DV
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 319
N D T LH A + ++++ ++L+ GAD ++K KTA D+S+ G + DLA
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE----DLA 149
Query: 320 KLLK 323
++L+
Sbjct: 150 EILQ 153
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA P D G +PLH A Q G + ++L++ V + TPLH+A +
Sbjct: 21 LMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 279 RDIAKVLLINGADKSRKTKDGKTAL 303
+I +VLL +GAD + K TAL
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTAL 104
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D G + LH A + AV+ L+ +GA +V + TPLH A G V+ L++Y
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
D+N + G PLH A +A+ L+ NGA S K G+ +D
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
D G +PLH+A + G V++LI +NV + TPLH+A +RDI + LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 290 ADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
AD + + G L + +G+D + DL
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
D+N D+ G++PLH A + + ++L++ GA + + T L ++ +G
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
I+ +++ T LH A ++ LL+ A+ + + G PLHYA G Q + L
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 253 IKYNVDVNVADNEGWTPL 270
+ V++ + G P+
Sbjct: 120 VANGALVSICNKYGEMPV 137
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D+ G T L A + + LL GA+PH+ + + L A G V LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
++ +VD+N+ D G TPL A++ + + LL GAD + + G T +D+++ G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
+AL A G ++ LL + + ++ D +G TPL YAV+ ++ V+ L+ D+
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVL 285
+ G+TP+ +A+ R + +V+
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ KD +G+TPLH A + G ++ VKLL++ DVN D G T I+I + N
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 279 RDIAKVL 285
D+A++L
Sbjct: 85 EDLAEIL 91
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DV D G TPLH+A ++ + ++ K+LL GAD + + K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 300 KTALDMSLCYGRDFKSYDLAKLLK 323
KTA D+S+ G + DLA++L+
Sbjct: 73 KTAFDISIDNGNE----DLAEILQ 92
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--- 258
T LH A+I + + LL G +P ++D G TPLH A + G + SV +L +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 259 ---VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFK 314
+ + G T LH+A I ++L+ GAD +++ +G+TAL +++ D +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQ 162
Query: 315 SYDLAKLL 322
+ DL LL
Sbjct: 163 NPDLVSLL 170
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQVGAMQSVKL 251
+ + + +G T LH A I ++ L+ GA+ + ++ +G T LH AV + V L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 252 LIKYNVDVNVADNEGWTPLHI 272
L+K DVN +G++P +
Sbjct: 170 LLKCGADVNRVTYQGYSPYQL 190
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 29/109 (26%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
+DG + LH AII +++A+ ++R+ VK GD A
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQ-----VK-GDLAF---------------------- 37
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
+N +N TPLH+A+ + +IA+ LL G D + G T L ++
Sbjct: 38 -LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D+ G T L A + + LL GA+PH+ + + L A G V LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
++ +VD+N+ D G TPL A+ + + LL GAD + + G T +D+++ G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
+AL A G ++ LL + + ++ D +G TPL YAV ++ V+ L+ D+
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTT 130
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVL 285
+ G+TP+ +A+ R + +V+
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ + G+T LH A+ K V L+ GA+ +KD PLH A VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
VN D +GWTPL A+ + D A VLL+ GA+ G A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLI 253
D+DG LH ++ + + S LL K N ++ D G TP H A VG ++ VK L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 KYNV--DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+ D+N N+G T LH+A+ + ++++ L+ NGA K K + L + G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LH+A + + + LL + P + KD DG PLH++V A + L+ +VN
Sbjct: 6 LHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 261 V---ADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
+ D+ GWTP HIA N ++ K L D ++ T G T L +++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ + G+T LH A+ K V L+ GA+ +KD PLH A VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
VN D +GWTPL A+ + D A VLL+ GA+ G A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLI 253
D+DG LH ++ + + S LL K N ++ D G TP H A VG ++ VK L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 KYNV--DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+ D+N N+G T LH+A+ + ++++ L+ NGA K K + L + G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LH+A + + + LL + P + KD DG PLH++V A + L+ +VN
Sbjct: 6 LHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 261 V---ADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
+ D+ GWTP HIA N ++ K L D ++ T G T L +++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ + G+T LH A+ K V L+ GA+ +KD PLH A VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
VN D +GWTPL A+ + D A VLL+ GA+ G A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLI 253
D+DG LH ++ + + S LL K N ++ D G TP H A VG ++ VK L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 254 KYNV--DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
+ D+N N+G T LH+A+ + ++++ L+ NGA K K + L + G
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHV---KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LH+A + + + LL + P + KD DG PLH++V A + L+ +VN
Sbjct: 6 LHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 261 V---ADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
+ D+ GWTP HIA N ++ K L D ++ T G T L +++
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--- 258
T LH A+I + + LL G +P ++D G TPLH A + G + SV +L +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 259 ---VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFK 314
+ + G T LH+A I ++L+ GAD +++ +G+TAL +++ D +
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQ 159
Query: 315 SYDLAKLL 322
+ DL LL
Sbjct: 160 NPDLVSLL 167
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQVGAMQSVKL 251
+ + + +G T LH A I ++ L+ GA+ + ++ +G T LH AV + V L
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 252 LIKYNVDVNVADNEGWTP 269
L+K DVN +G++P
Sbjct: 167 LLKCGADVNRVTYQGYSP 184
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
+ +DG + LH AII +++A+ ++R+ VK GD A
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQ-----VK-GDLAF-------------------- 34
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
+N +N TPLH+A+ + +IA+ LL G D + G T L ++
Sbjct: 35 ---LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+S D G T LH A+ V LLR + N + + DG TPL A ++ V+ L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
I + D+N ADN G T LH A N + +LL++ A++ + +T L ++ G
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG-- 195
Query: 313 FKSYDLAKLL 322
SY+ +K L
Sbjct: 196 --SYEASKAL 203
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
DG T L A E ++ L+ A+ + D G T LH+A V ++V +L+ ++ +
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+ D++ TPL +A + + + +K LL N A++
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASKALLDNFANR 210
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 215 VISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
VIS LL +GA + D G T LH A + + K L+ D N DN G TPLH A
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 274 IQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
+ + + ++LL N A + + + DG T L
Sbjct: 92 VAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
I++ D G TALH A + EAV + LL AN +D TPL A + G+ ++ K
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAV-NILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 202
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
L+ + + D+ P +A + + DI ++L
Sbjct: 203 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 214 AVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 272
AVIS + +GA+ H + D GAT LH A + K L++ + D N+ DN G TPLH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 273 AIQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
A+ + + + ++L+ N A D + DG T L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D G T LH A+ + V L+R + + + DG TPL A ++ ++ LI
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
+ DVN D+ G + LH A N D A VLL NGA+K + +T L ++ G S
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 202
Query: 316 YDLAKLL 322
Y+ AK+L
Sbjct: 203 YETAKVL 209
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D+ G TALH A + LL A+ +++D G TPLH AV A ++LI+
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 NV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
D++ ++G TPL +A + + + L+ + AD + GK+AL
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N TPL +A + + + AKVLL + A++
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 210 GKKEAVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT 268
G AVIS + +GA+ H + D G T LH A + + K L++ + D N+ DN G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 269 PLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
PLH A+ + + + ++L+ N A D + DG T L
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D G T LH A+ + V L+R + + + DG TPL A ++ ++ LI
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
+ DVN D+ G + LH A N D A VLL NGA+K + +T L ++ G S
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 170
Query: 316 YDLAKLL 322
Y+ AK+L
Sbjct: 171 YETAKVL 177
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
+ D+ G TALH A + LL A+ +++D G TPLH AV A ++LI
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
+ D++ ++G TPL +A + + + L+ + AD + GK+AL
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N TPL +A + + + AKVLL + A++
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 214 AVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 272
AVIS + +GA+ H + D G T LH A + + K L++ + D N+ DN G TPLH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 273 AIQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
A+ + + + ++L+ N A D + DG T L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D G T LH A+ + V L+R + + + DG TPL A ++ ++ LI
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
+ DVN D+ G + LH A N D A VLL NGA+K + +T L ++ G S
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 202
Query: 316 YDLAKLL 322
Y+ AK+L
Sbjct: 203 YETAKVL 209
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D+ G TALH A + LL A+ +++D G TPLH AV A ++LI+
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 NV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
D++ ++G TPL +A + + + L+ + AD + GK+AL
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N TPL +A + + + AKVLL + A++
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
L+ GA+ KD +G+TPLH A + G ++ VKLL++ DV D G T I+I + N
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 279 RDIAKVL 285
D+A++L
Sbjct: 103 EDLAEIL 109
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
A + G V++L+ DV D G TPLH+A ++ + ++ K+LL GAD + K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 300 KTALDMSLCYGRDFKSYDLAKLLK 323
KTA D+S+ G + DLA++L+
Sbjct: 91 KTAFDISIDNGNE----DLAEILQ 110
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
G PLHYA G ++ ++ L+ D+N D TPL A+ + K+LL GADK
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 293 SRKTKDGKTALDMS 306
+ K DG TAL+ +
Sbjct: 95 TVKGPDGLTALEAT 108
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 169 RPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHV 228
+PL Q+ I++ DK +T L A+ + + LL KGA+ V
Sbjct: 37 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Query: 229 KDGDGATPLHYAVQVGAMQSVKLLIK 254
K DG T A++ Q++K L++
Sbjct: 97 KGPDGLT----ALEATDNQAIKALLQ 118
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 214 AVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 272
AVIS + +GA+ H + D G T LH A + + K L++ + D N+ DN G TPLH
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 273 AIQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
A+ + + + ++L+ N A D + DG T L
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D G T LH A+ + V L+R + + + DG TPL A ++ ++ LI
Sbjct: 88 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
+ DVN D+ G + LH A N D A VLL NGA+K + +T L ++ G S
Sbjct: 148 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 203
Query: 316 YDLAKLL 322
Y+ AK+L
Sbjct: 204 YETAKVL 210
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
+ D+ G TALH A + LL A+ +++D G TPLH AV A ++LI
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 254 KYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
+ D++ ++G TPL +A + + + L+ + AD + GK+AL
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 211 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N TPL +A + + + AKVLL + A++
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 217
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
G PLHYA G ++ ++ L+ D+N D TPL A+ + K+LL GADK
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 293 SRKTKDGKTALDMS 306
+ K DG TA + +
Sbjct: 100 TVKGPDGLTAFEAT 113
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
++ G T LH A+ +E ++ LLR GA+P ++ +GATP A G+++ +KL +
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG 115
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA----------DKSRKTKDGKTAL 303
DVN D G+T A K L GA D+ R K G TAL
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 206 KAIIGKKEAVISHLLRKGANPHVKDGDGA-TPLHYAVQVGAMQSVKLLIKYNVDVNVADN 264
KA+ + ++ LL GAN + ++ +G TPLH AVQ+ V+LL+++ D +
Sbjct: 31 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
G TP +A + + + K+ L GAD + G TA + YG+
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK----------DGDGATPLHYAVQ 242
++ D G TA +A + K + L ++GAN +++ GAT L A +
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 243 VGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVLLINGADKSRKTK 297
G ++ +K+L+ + DVN DN G L H + S + D I +LL +GAD + + +
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 298 DGKTALDMSL 307
GKT L +++
Sbjct: 238 RGKTPLILAV 247
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGAMQSVK----LL 252
K G TAL A V+ LL + GA+ + D G L +A+ V+ LL
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL------INGADKSRKTKDGKTALDMS 306
+ + DVNV G TPL +A++ ++ + + LL IN D DGKTAL ++
Sbjct: 226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-----SDGKTALLLA 280
Query: 307 LCYGRDFKSYDLAKLL 322
+ + K +A+LL
Sbjct: 281 V----ELKLKKIAELL 292
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
++ G T LH A+ +E ++ LLR GA+P ++ +GATP A G+++ +KL +
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA----------DKSRKTKDGKTAL 303
DVN D G+T A K L GA D+ R K G TAL
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGA-TPLHYAVQVGAMQSVKLLIKYNVDVNVA 262
L KA+ + ++ LL GAN + ++ +G TPLH AVQ+ V+LL+++ D +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 263 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
G TP +A + + + K+ L GAD + G TA + YG+
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK----------DGDGATPLHYAVQ 242
++ D G TA +A + K + L ++GAN +++ GAT L A +
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 243 VGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVLLINGADKSRKTK 297
G ++ +K+L+ + DVN DN G L H + S + D I +LL +GAD + + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 298 DGKTALDMSL 307
GKT L +++
Sbjct: 218 RGKTPLILAV 227
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGAMQSVK----LL 252
K G TAL A V+ LL + GA+ + D G L +A+ V+ LL
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL------INGADKSRKTKDGKTALDMS 306
+ + DVNV G TPL +A++ ++ + + LL IN D DGKTAL ++
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-----SDGKTALLLA 260
Query: 307 LCYGRDFKSYDLAKLL 322
+ + K +A+LL
Sbjct: 261 V----ELKLKKIAELL 272
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
+D T L +A LL+ GAN + D G PLH+A +G L +K
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVL 285
D+ D+EG PL IA+++ N DI +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D G LH A I + L++GA+ +D +G PL A++ V LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
+D T L +A LL+ GAN + D G PLH+A +G L +K
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLI---NGADKSRKTKDGKTALDMSLCYGRDF 313
D+ D+EG PL IA+++ N DI +L + A+ ++ +T LD+ RDF
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF----RDF 347
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D G LH A I + L++GA+ +D +G PL A++ V LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 263
L A+ G+ E V+ +++ +P + +G T LH A+ V LI +VN D
Sbjct: 26 LDAALTGELE-VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 264 NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
+ GWTPLH A + I L+ +GA T DG TA +
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
+++G+TALH AI G +++ L+ GAN + D G TPLH A L+++
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 257 VDV 259
+
Sbjct: 111 AAI 113
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
+D T L +A LL+ GAN + D G PLH+A +G L +K
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVL 285
D+ D+EG PL IA+++ N DI +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
++ D G LH A I + L++GA+ +D +G PL A++ V LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 214 AVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 272
+VIS + +GA+ H + D G T LH A + + K L++ + D + DN G TPLH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 273 AIQSRNRDIAKVLLINGA-DKSRKTKDGKTAL 303
A+ + + + ++LL N A D + DG T L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPL 93
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D G T LH A+ + V LLR + + + DG TPL A ++ ++ LI
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
+ DVN D+ G + LH A N D A VLL NGA+K + +T L ++ G S
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG----S 167
Query: 316 YDLAKLL 322
Y+ AK+L
Sbjct: 168 YETAKVL 174
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
D+ G TALH A + LL A+ ++D G TPLH AV A ++L++
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 256 NV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
D++ ++G TPL +A + + + L+ + AD + GK+AL
Sbjct: 78 RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSAL 126
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 175 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N+ TPL +A + + + AKVLL + A++
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 181
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGAN-------------PHVKDGDGATPLHYAVQVGA 245
+G TALH A+I + ++ LL +GA+ PH G PL +A VG+
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
+ V+LLI++ D+ D+ G T LHI I N+ A
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 216 ISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-----NEGWTP 269
+S LL+ +G H + G T LH A +++ +L++ ++ EG T
Sbjct: 19 LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78
Query: 270 LHIAIQSRNRDIAKVLLINGADKSRKTKD-------------GKTALDMSLCYGRD 312
LHIA+ ++N ++ + LL GA S + G+ L + C G +
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQVGAMQSVKL 251
+++ + DGLTALH A+ + + + LL +GA+ D G +PL +AV+ ++ V+L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
L+++ +VN G + LH A + + L+ +GAD S K T L
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY----NV 257
T LH A+I +V+ L+ GA+P D G T H A + + ++ L+ +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTAL 303
D+ + +G T LH+A+ + ++ ++LL GAD + K G++ L
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 197 DKDGLTALHKAII-GKKEAV--ISHLLRKGANP-HVKDGDGATPLHYAVQVGAMQSVKLL 252
D+DG T LH A++ G AV + +L ++G + + TPLH AV V+LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA----DKSRKTKDGKTALDMSL 307
+ D G T H+A + R+ + LL + A D + DG TAL +++
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 193 IDSVD-KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
ID+VD K G + L A+ +++ LL+ GAN + + G++ LH A G + V+
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 201
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
L++ D ++ + TPL +A R DI +
Sbjct: 202 LVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGA 290
DG TPLH AV + V+LL D+N + G TPLH+A++++ + ++LL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 291 DKSRKTKDGKTALDMSL 307
D + + G+T L +L
Sbjct: 217 DPTARMYGGRTPLGSAL 233
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKL 251
+++ + DG T LH A+I K ++ L GA+ + + G TPLH AV+ A ++L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
L+K D G TPL A+ N +A++L +GA + D
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPH---VKDGDGATPLHYAVQVGAMQSVKLL 252
V +DG TALH A+I + E + LL A +++ G T LH A +G +V+ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
V VA+ G T LH+A + R A VLL R D
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 48/156 (30%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK----- 254
G TALH A I + + + L GA V + G T LH A +V A +L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 255 ------------------------------------------YNVDVNVADNEGWTPLHI 272
+ + + + +G TPLH+
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Query: 273 AIQSRNRDIAKVLLINGADKSRKTKD-GKTALDMSL 307
A+ ++ ++ ++L GAD ++ G+T L +++
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL L + ++ V D T L A + ++ LL+ GA+
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P 97
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
+ D A+P+H A + G ++ V LI Y +++ + TPL++A +++ R K LL +G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 290 ADKSR-KTKD------GKTALDMSLCYGRDFKSYDLAK 320
AD ++ K +D +TA + C DF + AK
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAK 195
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
+ +H+A I + + +L+ +G ++ D +PLH A G + VK+L+K+ VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
+ TPL A S + D +LL +GA
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
+ D + +H+A ++ L+ G N K TPL+ A + VK L++
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
DVN + +PLH ++ + ++A +L+ GAD K +GK +++
Sbjct: 158 ADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 294
+P+H A G S++ LI VN+ + +PLH A + K+LL +GA +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 295 KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
T D T L + G S+D LL
Sbjct: 65 VTADWHTPLFNACVSG----SWDCVNLL 88
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
PL L + ++ V D T L A + ++ LL+ GA+
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P 153
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
+ D A+P+H A + G ++ V LI Y +++ + TPL++A +++ R K LL +G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 290 ADKSR-KTKDG------KTALDMSLCYGRDFKSYDLAK 320
AD ++ K +D +TA + C DF + AK
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
+ +H+A I + + +L+ +G ++ D +PLH A G + VK+L+K+ VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
+ TPL A S + D +LL +GA
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
+ D + +H+A ++ L+ G N K TPL+ A + VK L++
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
DVN + +PLH +++ + ++A +L+ GAD K +GK +++
Sbjct: 214 ADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 294
+P+H A G S++ LI VN+ + +PLH A + K+LL +GA +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 295 KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
T D T L + G S+D LL
Sbjct: 121 VTADWHTPLFNACVSG----SWDCVNLL 144
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKL 251
+++ + DG T LH A+I K ++ L GA+ + + G TPLH AV+ A ++L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
L+K D G TPL A+ N +A++L +GA + D
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPH---VKDGDGATPLHYAVQVGAMQSVKLL 252
V +DG TALH A+I + E + LL A +++ G T LH A +G +V+ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
V VA+ G T LH+A + R A VLL R D
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 48/156 (30%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK----- 254
G TALH A I + + + L GA V + G T LH A +V A +L++
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 255 ------------------------------------------YNVDVNVADNEGWTPLHI 272
+ + + + +G TPLH+
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Query: 273 AIQSRNRDIAKVLLINGADKSRKTKD-GKTALDMSL 307
A+ ++ ++ ++L GAD ++ G+T L +++
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY-NVD 258
G TAL A+ + V+ LL A+ +V+D DG+T L A + G + LL+ + D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVL 285
+++ D +G T L +A+ + +IA +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKG-ANPHVKDGDGATPLHYAVQVGA-----M 246
++ D +G TALH ++ V+ LL G ++ G +P+ +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 247 QSVKLLIKYNVDVNV-ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
++V L + ++N A G T L +A+ D+ K LL AD + + DG TAL M
Sbjct: 164 ETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-M 221
Query: 306 SLCYGRDFKSYDLAKLLKILP 326
C + ++A LL +P
Sbjct: 222 CAC---EHGHKEIAGLLLAVP 239
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+++VD G +ALH A LL+ GAN +++ TPL A + G+ ++ K+L
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ + + ++ D+ P IA + + DI ++L
Sbjct: 101 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
DG TPL A ++ ++ LI + DVN D+ G + LH A N D A VLL NGA+
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
K + +T L ++ G SY+ AK+L
Sbjct: 74 KDMQNNKEETPLFLAAREG----SYETAKVL 100
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
+D+ DG T L A E ++ L+ A+ + D G + LH+A V + + +L
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
+K + ++ +N+ TPL +A + + + AKVLL + A++
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 107
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 202 TALHKAIIGKKEA---VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
TALH A+ ++ L++ N + G G+T LHY + +KLL++
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVL 285
+ +A+ G TPL IA + ++ ++L
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELL 257
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 224 ANPHVKDGDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 280
AN H D T LH AV+ ++ V L++ + +++ +G T LH + N +
Sbjct: 163 ANGHEPD---ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 281 IAKVLLINGADKSRKTKDGKTALDMS 306
K+LL A + G+T LD++
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIA 245
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
DS G TALH A ++ +L+ KG+N +D DG TP+ A Q G ++ V L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
I+ V D T +A + + +I +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
+ K I DVN D + TPL +A+ +R R + L GAD + K ++AL
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 306 SLCYGRDF 313
+ RDF
Sbjct: 206 AAA-NRDF 212
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 48/167 (28%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV-------QVGA 245
+++ D D T L A++ ++ ++++L + GA+P + + + LH A V
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 246 MQSVKL----------------LIKYN------------------VDVNVA---DNE--- 265
+ S KL ++ +N VD + A D+E
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 266 GWTPLHIAIQSRNRDIAKVLL-INGADKSRKTKDGKTALDMSLCYGR 311
G T LH A Q N I K L+ G++K ++ +DGKT + ++ GR
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGD--GATPLHYAVQVGAMQSVKLLIKYN-VDVN 260
L+ G+ E +++++L K A P + + G L A + G + +VKLL++ D++
Sbjct: 77 LYAGAQGRTE-ILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 261 VADNEGWTPLHIAIQSRN-----RDIAKVLLINGADKSRKTKDGKTALDMS 306
++ G+T L A+ R +DI K+L+ NGAD+S K G+TA+D +
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 193 IDSVDKDGLTALHKAIIGKKEA------VISHLLRKGANPHVKDGDGATPLHYAVQVGAM 246
ID + G TAL +A+ G +E ++ L+ GA+ +KD G T + YA Q G
Sbjct: 133 IDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 247 QSVKLLIKYN 256
+ K+L +YN
Sbjct: 192 EISKILAQYN 201
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
V+ D EG TPL+IA+ + + +IAK L+ GAD
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP-LHIAIQSRNRDIAKVLLIN 288
D +G TPL+ AV ++ K LI D+N+ ++ +P L+ Q R +A +L
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 289 GADKSRKTKDGKTAL 303
D ++ + G AL
Sbjct: 96 TPDLNKHNRYGGNAL 110
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 263
LH+A + ++ LL G + D G T L+YAV G Q+VKL +K N +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYG 125
Query: 264 NEGW-TPLHIAIQSRNRDIAKVLL 286
GW T + A+ + I L
Sbjct: 126 KTGWKTSFYHAVXLNDVSIVSYFL 149
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
D G + +YA+ ++ V L+ N+ +NE PLH A + I K+LL +G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSG 85
Query: 290 ADKSRKTKDGKTAL 303
D S+ G TAL
Sbjct: 86 LDDSQFDDKGNTAL 99
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D G +A + AI ++ LL GA ++ + + PLH A + + VK+L+
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSG 85
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
+D + D++G T L+ A+ S N K+ +
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 227 HVKDGDGATPLHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 280
HVK G T LH+ V +G ++ +K+L++ D TPL A + RNR+
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
D + +H A + + L+ G +P +++ G T LH A + G + + K L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
++ G P+H+A+ + D+ V L+ GA
Sbjct: 77 EVHSLW--HGQKPIHLAVXANKTDLV-VALVEGA 107
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
G + LH+A+ + ++ +DVN DNE PL++++++ + K LL
Sbjct: 211 GNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELL 264
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 200 GLTALHKAIIGKKEAV--ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI---- 253
G TALH + E + I L++ GA+P KD TPL A + +++ L
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 254 -KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 307
K ++ ++ A+ +G + LH AI D+A + G D + + + L +S+
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSV 252
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 204 LHKAIIGKKEA---VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LH A+ +A ++ +++ G + K DG T LHYA +KLL+K V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 261 VADNEGWTPLHIAIQSRNRDIAKVL 285
+ G T L IA + +++ ++L
Sbjct: 235 TVNEAGETALDIARKKHHKECEELL 259
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 237 LHYAVQVGAMQSVKL---LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
LH AV+V S+ L +I+ ++ +G T LH A D K+LL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 294 RKTKDGKTALDMS 306
+ G+TALD++
Sbjct: 235 TVNEAGETALDIA 247
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 204 LHKAIIGKKEA---VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
LH A+ +A ++ +++ G + K DG T LHYA +KLL+K V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 261 VADNEGWTPLHIAIQSRNRDIAKVL 285
+ G T L IA + +++ ++L
Sbjct: 254 TVNEAGETALDIARKKHHKECEELL 278
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 237 LHYAVQVGAMQSVKL---LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
LH AV+V S+ L +I+ ++ +G T LH A D K+LL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 294 RKTKDGKTALDMS 306
+ G+TALD++
Sbjct: 254 TVNEAGETALDIA 266
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLIN 288
D +G T L + +G+ + V+LL + D++ D G T LH+A ++ + L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 289 GADKSRKTKDGKTALDMS 306
GAD + + G TAL+++
Sbjct: 133 GADIEVEDERGLTALELA 150
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
+ GLTALH A + V+ L+ GA+ V+D G T L A ++
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
TA KA E +S LL + D +G T L + +G+ + V+LL + D++
Sbjct: 51 TAARKA----DEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 262 AD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
D G T LH+A ++ + L+ GAD + + G TAL+++
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
+ GLTALH A + V+ L+ GA+ V+D G T L A ++
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 230 DGDGATPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 288
D G+T L++A G V+ L + N+++N + G T LH A DI ++LL
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 289 GADKSRKTKDGKTALDMS 306
GA + + K A D +
Sbjct: 163 GARTDLRNIEKKLAFDXA 180
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGAD 291
+G T LHIAI+ RN + +L+ NGAD
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGAD 126
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPH-VKDGD-------------GATPLHYAVQVGA 245
G TALH AI + +++ L+ GA+ +GD G PL A
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 246 MQSVKLLIKYN---VDVNVADNEGWTPLHIAIQ 275
+ VK L++ + D++ D+ G T LH ++
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE--------------GWTPLHIAIQSRN 278
G T LH A++ V LL++ DV A N G PL +A +
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 279 RDIAKVLLING---ADKSRKTKDGKTAL 303
I K LL N AD S + G T L
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVL 188
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 13/62 (20%)
Query: 197 DKDGLTALHKAI------IGKKEA----VISHLLRKGANPHVKDGDGAT-PLHYAVQVGA 245
+++G + +H AI IG EA V+ H+L GANPHVK G AT L+ AV G
Sbjct: 229 EQNGDSLVHAAIVAESAAIGGAEANAFSVLQHVL--GANPHVKRGLNATSSLYQAVAKGV 286
Query: 246 MQ 247
Q
Sbjct: 287 HQ 288
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR 279
D G TPLH+ + ++ VK L+K+ + DN G + L A++S N
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVD--------VNVADNEGWTPLHIAIQSRNRDI 281
DG G T + Y +Q+G + + K I +NV+ +NV D G T + + D
Sbjct: 27 DGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT 86
Query: 282 AKVLL-INGADKSRKTKDGK 300
A V+ ++ DK R + K
Sbjct: 87 AAVIFVVDSTDKDRMSTASK 106
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 13/59 (22%)
Query: 197 DKDGLTALHKAI------IGKKEA----VISHLLRKGANPHVKDGDGAT-PLHYAVQVG 244
+++G + +H AI IG EA V+ H+L GANPHVK G AT L+ AV G
Sbjct: 229 EQNGDSLVHAAIVAESAAIGGAEANAFSVLQHVL--GANPHVKRGLNATSSLYQAVAKG 285
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGAD 291
+G + LHIAI+ R+ K+L+ NGAD
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGAD 128
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGAD 291
+G + LHIAI+ R+ K+L+ NGAD
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGAD 115
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 194 DSVDKDGLTALHKAIIGKKEA----VISHLLRKGANPHVKDGDGAT-PLHYAVQVGAMQ 247
DS+ L A A IG EA V+ H+L GA PHVK G AT L+ AV G Q
Sbjct: 264 DSLVHAALVA-ESAAIGSAEANAFSVLQHVL--GAGPHVKRGSNATSSLYQAVAKGVHQ 319
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 227 HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
+ K G A+P+ +++KL +KYNVD + D +A S+ D+ +++
Sbjct: 102 YEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAG-----IVASNSKMYDLKDIVV 156
Query: 287 -----INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL 321
+ K R ++G +SLC+ +DFK D ++
Sbjct: 157 AVESAVGARPKLRCDEEG-LVQKLSLCFDKDFKPRDCVQV 195
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 194 DSVDKDGLTALHKAIIGKKEA----VISHLLRKGANPHVKDGDGAT-PLHYAVQVGAMQ 247
DS+ L A A IG EA V+ H+L GA PHVK G AT L+ AV G Q
Sbjct: 234 DSLVHAALVA-ESAAIGSAEANAFSVLQHVL--GAGPHVKRGSNATSSLYQAVAKGVHQ 289
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 194 DSVDKDGLTALHKAIIGKKEA----VISHLLRKGANPHVKDGDGAT-PLHYAVQVGAMQ 247
DS+ L A A IG EA V+ H+L GA PHVK G AT L+ AV G Q
Sbjct: 250 DSLVHAALVA-ESAAIGSAEANAFSVLQHVL--GAGPHVKRGSNATSSLYQAVAKGVHQ 305
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 27/116 (23%)
Query: 200 GLTALHKAIIGKKEAVISHLL------RKGANP----HVKDGD----GATPLHYAVQVGA 245
G T L KA++ K+ V + +L R NP + + D G + LH A++ +
Sbjct: 48 GKTCLXKAVLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRS 107
Query: 246 MQSVKLLIKYNVDVNVADNE-------------GWTPLHIAIQSRNRDIAKVLLIN 288
+Q VKLL++ +V+ G PL +A ++ D+ LL N
Sbjct: 108 LQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLEN 163
>pdb|2HCV|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2I56|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I57|A Chain A, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|B Chain B, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|C Chain C, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|D Chain D, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|3ITX|A Chain A, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|B Chain B, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|C Chain C, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|D Chain D, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|A Chain A, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|B Chain B, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|C Chain C, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|D Chain D, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|A Chain A, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|B Chain B, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|C Chain C, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|D Chain D, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|A Chain A, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|B Chain B, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|C Chain C, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|D Chain D, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|A Chain A, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|B Chain B, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|C Chain C, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|D Chain D, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
Length = 438
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 241 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMIDQSHNVTDPIESLINSANEIRRA 349
>pdb|3ITL|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITO|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
Length = 438
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 241 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMINQSHNVTDPIESLINSANEIRRA 349
>pdb|4GJI|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJJ|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
Length = 438
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 241 VQVGAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
+ GA++ +L + +N VD +G+ P H+ QS N LIN A++ R+
Sbjct: 292 LDAGAIEPYRLFLVFNELVDAEARGVKGFHPAHMIDQSHNVTDPIESLINSANEIRRA 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,414,506
Number of Sequences: 62578
Number of extensions: 240071
Number of successful extensions: 1019
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 423
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)