Query 020275
Match_columns 328
No_of_seqs 109 out of 1049
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 2.9E-84 6.2E-89 616.5 40.3 322 6-327 7-334 (335)
2 PRK09485 mmuM homocysteine met 100.0 1.4E-80 3.1E-85 585.4 38.2 301 10-325 3-303 (304)
3 KOG1579 Homocysteine S-methylt 100.0 1.1E-80 2.4E-85 569.5 33.2 302 14-327 12-315 (317)
4 COG2040 MHT1 Homocysteine/sele 100.0 1E-79 2.2E-84 555.4 30.3 296 14-328 4-300 (300)
5 PRK07534 methionine synthase I 100.0 6.5E-73 1.4E-77 538.1 36.9 290 7-327 1-296 (336)
6 PF02574 S-methyl_trans: Homoc 100.0 2.3E-76 5E-81 557.9 11.0 291 21-326 1-305 (305)
7 COG0646 MetH Methionine syntha 100.0 3.4E-70 7.4E-75 495.7 33.5 299 6-326 3-311 (311)
8 PRK09490 metH B12-dependent me 100.0 6.2E-68 1.4E-72 564.2 37.0 304 5-326 5-330 (1229)
9 PRK08645 bifunctional homocyst 100.0 1.9E-67 4.1E-72 537.3 36.0 282 11-326 4-287 (612)
10 TIGR02082 metH 5-methyltetrahy 100.0 1.2E-65 2.7E-70 548.2 35.9 292 19-327 3-315 (1178)
11 COG0646 MetH Methionine syntha 96.9 0.087 1.9E-06 49.3 16.9 159 153-325 50-243 (311)
12 cd00945 Aldolase_Class_I Class 96.2 0.75 1.6E-05 39.7 17.5 137 162-324 15-169 (201)
13 TIGR00683 nanA N-acetylneurami 95.4 1.6 3.4E-05 41.1 17.5 104 153-269 18-137 (290)
14 cd02810 DHOD_DHPD_FMN Dihydroo 95.3 0.77 1.7E-05 42.8 15.0 84 201-306 98-193 (289)
15 TIGR02082 metH 5-methyltetrahy 95.3 1.1 2.4E-05 50.1 18.1 161 153-326 47-250 (1178)
16 TIGR00222 panB 3-methyl-2-oxob 95.2 1.1 2.4E-05 41.6 15.1 155 63-265 31-200 (263)
17 PRK09490 metH B12-dependent me 95.1 6.7 0.00015 44.1 23.5 216 54-314 160-409 (1229)
18 TIGR01037 pyrD_sub1_fam dihydr 95.1 0.7 1.5E-05 43.4 14.1 116 165-306 27-186 (300)
19 PRK03620 5-dehydro-4-deoxygluc 94.6 3.9 8.4E-05 38.7 17.7 104 153-270 25-142 (303)
20 cd00408 DHDPS-like Dihydrodipi 94.5 4.1 8.9E-05 37.7 17.6 104 153-269 15-132 (281)
21 cd06556 ICL_KPHMT Members of t 94.4 2 4.4E-05 39.3 14.8 73 126-208 126-198 (240)
22 PRK10415 tRNA-dihydrouridine s 94.3 1.6 3.5E-05 41.7 14.4 90 171-270 31-143 (321)
23 cd02801 DUS_like_FMN Dihydrour 94.2 0.94 2E-05 40.5 12.2 98 162-270 15-133 (231)
24 PLN02424 ketopantoate hydroxym 93.9 2.8 6E-05 40.1 14.9 116 124-264 95-221 (332)
25 PRK05286 dihydroorotate dehydr 93.6 2.7 5.8E-05 40.6 14.7 98 189-303 125-239 (344)
26 cd00377 ICL_PEPM Members of th 93.6 3.3 7.1E-05 37.9 14.6 102 163-270 87-206 (243)
27 TIGR00737 nifR3_yhdG putative 93.6 0.91 2E-05 43.2 11.4 93 171-270 29-141 (319)
28 PRK09485 mmuM homocysteine met 93.5 6.9 0.00015 37.0 18.5 156 154-325 44-236 (304)
29 cd06557 KPHMT-like Ketopantoat 93.4 1.8 3.9E-05 40.0 12.5 42 160-208 158-199 (254)
30 cd00377 ICL_PEPM Members of th 93.4 2.3 5E-05 38.9 13.2 120 52-209 82-204 (243)
31 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.3 5.3 0.00011 37.2 15.8 101 163-267 94-199 (275)
32 PRK08645 bifunctional homocyst 93.1 6.9 0.00015 40.8 17.8 156 154-325 41-220 (612)
33 cd02940 DHPD_FMN Dihydropyrimi 93.1 1.5 3.3E-05 41.3 11.9 81 201-304 99-195 (299)
34 PRK00311 panB 3-methyl-2-oxobu 93.0 2 4.3E-05 39.9 12.3 94 163-265 97-201 (264)
35 cd00950 DHDPS Dihydrodipicolin 93.0 1.5 3.4E-05 40.7 11.8 104 153-269 18-135 (284)
36 cd08205 RuBisCO_IV_RLP Ribulos 93.0 8.5 0.00018 37.5 17.2 111 52-208 144-254 (367)
37 cd04740 DHOD_1B_like Dihydroor 93.0 7.9 0.00017 36.2 16.6 136 161-325 103-278 (296)
38 PRK00311 panB 3-methyl-2-oxobu 92.9 3.5 7.5E-05 38.4 13.6 72 125-208 130-202 (264)
39 COG0329 DapA Dihydrodipicolina 92.8 4.3 9.2E-05 38.4 14.5 105 153-270 22-140 (299)
40 cd06557 KPHMT-like Ketopantoat 92.7 3.1 6.8E-05 38.4 13.0 114 126-265 74-198 (254)
41 cd04729 NanE N-acetylmannosami 92.7 7.1 0.00015 34.8 16.1 89 163-265 82-182 (219)
42 cd00951 KDGDH 5-dehydro-4-deox 92.6 5.9 0.00013 37.1 15.2 104 153-270 18-135 (289)
43 PF00701 DHDPS: Dihydrodipicol 92.6 2.4 5.3E-05 39.5 12.5 100 161-269 23-136 (289)
44 PF03437 BtpA: BtpA family; I 92.4 9 0.0002 35.4 15.8 37 147-185 18-54 (254)
45 TIGR02317 prpB methylisocitrat 92.3 2.7 5.8E-05 39.5 12.3 44 162-210 163-206 (285)
46 TIGR03249 KdgD 5-dehydro-4-deo 92.2 3.6 7.7E-05 38.7 13.1 104 153-270 23-140 (296)
47 PRK07259 dihydroorotate dehydr 92.1 10 0.00023 35.5 16.7 81 201-305 91-185 (301)
48 cd04740 DHOD_1B_like Dihydroor 92.1 10 0.00022 35.4 16.8 81 201-305 89-182 (296)
49 cd04738 DHOD_2_like Dihydrooro 92.0 4.3 9.3E-05 38.8 13.7 87 201-304 128-231 (327)
50 PRK13397 3-deoxy-7-phosphohept 91.9 10 0.00022 34.9 16.4 156 49-265 24-189 (250)
51 PRK05692 hydroxymethylglutaryl 91.7 7.4 0.00016 36.6 14.5 130 64-231 89-223 (287)
52 cd00952 CHBPH_aldolase Trans-o 91.5 5.2 0.00011 37.9 13.4 104 153-269 26-144 (309)
53 TIGR00262 trpA tryptophan synt 91.4 12 0.00025 34.6 18.5 92 163-265 105-203 (256)
54 PRK14042 pyruvate carboxylase 91.0 6.5 0.00014 40.8 14.5 97 165-268 101-205 (596)
55 TIGR00674 dapA dihydrodipicoli 91.0 2.4 5.1E-05 39.6 10.5 104 153-269 16-133 (285)
56 cd00954 NAL N-Acetylneuraminic 90.9 11 0.00023 35.3 14.9 104 153-269 18-137 (288)
57 PRK07565 dihydroorotate dehydr 90.8 4.2 9.2E-05 38.9 12.3 75 185-267 86-172 (334)
58 TIGR00742 yjbN tRNA dihydrouri 90.8 7.2 0.00016 37.2 13.7 124 162-306 16-158 (318)
59 PRK10550 tRNA-dihydrouridine s 90.7 16 0.00034 34.8 15.9 116 162-303 16-162 (312)
60 TIGR01463 mtaA_cmuA methyltran 90.6 13 0.00029 35.4 15.5 155 49-256 164-336 (340)
61 PRK13111 trpA tryptophan synth 90.5 14 0.00031 34.1 18.4 92 163-265 107-205 (258)
62 PRK04147 N-acetylneuraminate l 90.3 4.8 0.0001 37.7 12.0 104 153-269 21-139 (293)
63 COG0826 Collagenase and relate 90.2 3.1 6.8E-05 40.2 10.7 134 62-244 21-175 (347)
64 PRK15063 isocitrate lyase; Pro 90.2 7.3 0.00016 38.6 13.3 34 163-197 268-302 (428)
65 cd00958 DhnA Class I fructose- 90.1 12 0.00027 33.6 14.1 120 164-304 80-209 (235)
66 PRK07259 dihydroorotate dehydr 89.9 17 0.00037 34.1 19.7 73 162-243 106-192 (301)
67 TIGR00736 nifR3_rel_arch TIM-b 89.8 12 0.00027 34.0 13.7 81 201-306 67-165 (231)
68 PRK05437 isopentenyl pyrophosp 89.7 18 0.00039 35.0 15.6 135 160-318 77-228 (352)
69 PF00682 HMGL-like: HMGL-like 89.6 15 0.00033 33.0 14.9 137 51-231 64-205 (237)
70 cd02911 arch_FMN Archeal FMN-b 89.5 16 0.00035 33.2 14.3 115 165-311 40-174 (233)
71 PRK03170 dihydrodipicolinate s 89.4 3 6.5E-05 39.0 9.8 103 153-268 19-135 (292)
72 PRK11320 prpB 2-methylisocitra 89.4 11 0.00023 35.7 13.4 43 162-209 168-210 (292)
73 PRK08673 3-deoxy-7-phosphohept 89.3 21 0.00046 34.3 17.3 158 50-270 103-272 (335)
74 TIGR02313 HpaI-NOT-DapA 2,4-di 89.3 6.7 0.00015 36.9 12.1 103 153-268 18-135 (294)
75 PRK05581 ribulose-phosphate 3- 89.2 13 0.00029 32.8 13.4 50 162-212 18-72 (220)
76 TIGR02319 CPEP_Pphonmut carbox 89.0 10 0.00022 35.8 12.9 43 163-210 168-210 (294)
77 PRK14040 oxaloacetate decarbox 88.9 16 0.00035 37.9 15.4 102 163-268 100-206 (593)
78 TIGR00612 ispG_gcpE 1-hydroxy- 88.9 11 0.00023 36.3 12.8 119 162-299 36-157 (346)
79 PRK12581 oxaloacetate decarbox 88.8 17 0.00037 36.6 14.9 99 166-268 111-214 (468)
80 PRK05286 dihydroorotate dehydr 88.7 11 0.00025 36.2 13.4 73 161-240 158-244 (344)
81 TIGR02320 PEP_mutase phosphoen 88.5 13 0.00028 35.0 13.3 44 163-206 172-216 (285)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 88.3 19 0.00041 33.1 14.2 94 166-268 91-193 (263)
83 PF02574 S-methyl_trans: Homoc 88.1 14 0.0003 34.8 13.4 156 154-325 39-236 (305)
84 PRK00865 glutamate racemase; P 88.0 9.1 0.0002 35.3 11.8 136 153-311 47-187 (261)
85 TIGR03217 4OH_2_O_val_ald 4-hy 87.9 26 0.00057 33.6 19.2 77 235-326 103-183 (333)
86 PRK07534 methionine synthase I 87.2 29 0.00063 33.4 17.8 157 154-324 43-227 (336)
87 PLN02495 oxidoreductase, actin 87.0 13 0.00027 36.6 12.6 74 162-244 129-218 (385)
88 PF01729 QRPTase_C: Quinolinat 87.0 3.2 6.9E-05 35.9 7.6 66 164-242 91-156 (169)
89 cd00465 URO-D_CIMS_like The UR 86.9 26 0.00057 32.6 18.2 144 156-325 140-305 (306)
90 PRK06852 aldolase; Validated 86.9 15 0.00033 34.8 12.7 102 163-272 62-181 (304)
91 CHL00200 trpA tryptophan synth 86.9 26 0.00057 32.5 17.4 92 163-265 109-207 (263)
92 PRK05458 guanosine 5'-monophos 86.8 11 0.00023 36.3 11.7 93 163-270 99-209 (326)
93 PLN02417 dihydrodipicolinate s 86.7 5.9 0.00013 36.9 9.9 101 153-268 19-133 (280)
94 TIGR01306 GMP_reduct_2 guanosi 86.7 24 0.00052 33.8 14.0 96 163-269 48-145 (321)
95 COG0821 gcpE 1-hydroxy-2-methy 86.6 4.5 9.8E-05 38.7 8.8 80 162-244 38-134 (361)
96 PRK15063 isocitrate lyase; Pro 86.3 37 0.00081 33.7 15.9 136 163-306 164-343 (428)
97 TIGR01235 pyruv_carbox pyruvat 86.3 30 0.00064 38.9 16.4 103 165-268 630-740 (1143)
98 PRK02048 4-hydroxy-3-methylbut 86.2 5 0.00011 41.3 9.6 50 162-212 43-95 (611)
99 PRK01130 N-acetylmannosamine-6 86.2 5.8 0.00013 35.4 9.3 89 163-265 78-178 (221)
100 PRK12677 xylose isomerase; Pro 86.2 31 0.00068 33.8 15.0 158 55-242 68-245 (384)
101 PF00682 HMGL-like: HMGL-like 86.0 22 0.00047 31.9 13.0 136 166-324 73-233 (237)
102 PLN02489 homocysteine S-methyl 85.7 35 0.00075 32.8 19.3 159 154-326 53-264 (335)
103 COG0159 TrpA Tryptophan syntha 85.7 24 0.00051 32.9 13.0 163 52-265 29-210 (265)
104 cd04722 TIM_phosphate_binding 85.6 8 0.00017 32.7 9.6 103 160-269 12-123 (200)
105 PRK12331 oxaloacetate decarbox 85.4 43 0.00093 33.6 16.0 102 163-268 99-205 (448)
106 TIGR01769 GGGP geranylgeranylg 85.3 27 0.00058 31.2 14.1 142 163-325 14-176 (205)
107 PLN02925 4-hydroxy-3-methylbut 85.1 4.8 0.0001 42.1 8.9 50 162-212 112-164 (733)
108 cd04732 HisA HisA. Phosphorib 85.1 9.5 0.00021 34.1 10.2 103 163-270 85-198 (234)
109 cd03174 DRE_TIM_metallolyase D 84.8 30 0.00066 31.3 15.7 144 153-326 16-186 (265)
110 PLN02591 tryptophan synthase 84.7 32 0.0007 31.6 18.6 92 163-265 96-194 (250)
111 TIGR02151 IPP_isom_2 isopenten 84.7 21 0.00045 34.2 12.8 132 159-313 69-216 (333)
112 PRK15452 putative protease; Pr 84.7 33 0.00071 34.4 14.5 74 163-243 13-98 (443)
113 TIGR02635 RhaI_grampos L-rhamn 84.6 22 0.00047 34.9 12.9 176 51-258 69-269 (378)
114 cd02940 DHPD_FMN Dihydropyrimi 84.6 26 0.00055 33.0 13.2 73 162-243 115-203 (299)
115 PF13714 PEP_mutase: Phosphoen 84.4 23 0.00049 32.4 12.3 115 52-208 83-198 (238)
116 PRK12858 tagatose 1,6-diphosph 84.4 28 0.00061 33.6 13.4 128 167-312 113-277 (340)
117 PRK12330 oxaloacetate decarbox 84.3 47 0.001 33.8 15.5 102 163-268 100-208 (499)
118 PRK08385 nicotinate-nucleotide 84.2 9.6 0.00021 35.7 9.9 68 164-242 193-260 (278)
119 PRK13384 delta-aminolevulinic 84.1 40 0.00086 32.1 19.6 224 53-306 60-311 (322)
120 PRK00366 ispG 4-hydroxy-3-meth 84.1 22 0.00047 34.5 12.2 119 161-298 43-165 (360)
121 PF01208 URO-D: Uroporphyrinog 84.0 18 0.00039 34.3 12.1 155 49-257 166-342 (343)
122 PLN02274 inosine-5'-monophosph 84.0 15 0.00033 37.3 12.0 65 163-240 250-316 (505)
123 cd08210 RLP_RrRLP Ribulose bis 83.7 45 0.00098 32.5 16.7 112 124-268 125-251 (364)
124 PRK09250 fructose-bisphosphate 83.5 27 0.00058 33.8 12.7 132 164-316 95-244 (348)
125 TIGR00007 phosphoribosylformim 83.4 18 0.00039 32.3 11.2 100 163-265 84-194 (230)
126 cd07938 DRE_TIM_HMGL 3-hydroxy 83.3 39 0.00085 31.4 14.4 66 160-231 149-217 (274)
127 cd04739 DHOD_like Dihydroorota 83.2 23 0.00049 33.9 12.3 60 201-267 99-170 (325)
128 PRK13587 1-(5-phosphoribosyl)- 83.2 22 0.00047 32.3 11.7 97 163-265 88-197 (234)
129 PRK00694 4-hydroxy-3-methylbut 83.2 5.7 0.00012 40.7 8.4 48 163-211 48-98 (606)
130 cd07939 DRE_TIM_NifV Streptomy 83.1 37 0.00081 31.1 15.1 132 52-231 71-206 (259)
131 smart00633 Glyco_10 Glycosyl h 83.1 37 0.0008 31.0 13.8 52 159-212 135-194 (254)
132 cd08205 RuBisCO_IV_RLP Ribulos 83.0 19 0.00041 35.1 11.8 101 153-269 143-256 (367)
133 PRK06252 methylcobalamin:coenz 82.9 42 0.00092 31.8 14.2 85 164-257 244-335 (339)
134 PF02515 CoA_transf_3: CoA-tra 82.9 5.8 0.00013 34.7 7.6 56 50-137 5-60 (191)
135 PRK00748 1-(5-phosphoribosyl)- 82.6 35 0.00076 30.4 13.5 100 163-270 86-198 (233)
136 KOG2335 tRNA-dihydrouridine sy 82.6 5.7 0.00012 38.3 7.8 83 201-306 73-172 (358)
137 PLN02746 hydroxymethylglutaryl 82.5 49 0.0011 32.0 14.7 130 64-231 131-265 (347)
138 PRK06843 inosine 5-monophospha 82.5 24 0.00053 34.8 12.3 81 124-240 140-221 (404)
139 cd04741 DHOD_1A_like Dihydroor 82.3 21 0.00046 33.5 11.6 79 201-301 91-183 (294)
140 PRK09140 2-dehydro-3-deoxy-6-p 82.2 36 0.00078 30.3 12.5 117 163-324 73-199 (206)
141 PRK09282 pyruvate carboxylase 81.9 47 0.001 34.6 14.8 98 164-268 100-205 (592)
142 TIGR01108 oadA oxaloacetate de 81.8 62 0.0014 33.6 15.6 101 164-268 95-200 (582)
143 PRK14041 oxaloacetate decarbox 81.6 48 0.001 33.5 14.3 97 165-268 100-204 (467)
144 PF04551 GcpE: GcpE protein; 81.5 3.9 8.4E-05 39.5 6.2 81 163-244 34-142 (359)
145 PLN02617 imidazole glycerol ph 81.5 26 0.00055 36.1 12.5 105 164-270 338-492 (538)
146 PF00490 ALAD: Delta-aminolevu 81.3 51 0.0011 31.5 17.2 226 53-306 56-312 (324)
147 PRK06552 keto-hydroxyglutarate 81.2 28 0.00061 31.2 11.4 102 163-309 78-183 (213)
148 TIGR03128 RuMP_HxlA 3-hexulose 80.9 37 0.00081 29.6 15.0 66 165-241 68-133 (206)
149 COG2513 PrpB PEP phosphonomuta 80.3 2.8 6E-05 39.3 4.7 42 163-209 169-210 (289)
150 TIGR00735 hisF imidazoleglycer 79.8 49 0.0011 30.2 16.5 99 164-265 87-204 (254)
151 PRK11815 tRNA-dihydrouridine s 79.6 60 0.0013 31.1 14.5 124 162-306 26-168 (333)
152 TIGR02660 nifV_homocitr homoci 79.5 63 0.0014 31.3 14.7 99 164-268 76-193 (365)
153 PF09370 TIM-br_sig_trns: TIM- 79.4 3.4 7.3E-05 38.3 4.9 136 21-198 118-265 (268)
154 PRK13398 3-deoxy-7-phosphohept 79.4 53 0.0012 30.5 17.3 29 49-77 36-64 (266)
155 PRK12581 oxaloacetate decarbox 79.4 74 0.0016 32.1 15.7 122 54-230 105-229 (468)
156 cd04824 eu_ALAD_PBGS_cysteine_ 79.3 59 0.0013 31.0 16.9 223 53-306 50-308 (320)
157 PRK13523 NADPH dehydrogenase N 79.2 62 0.0013 31.1 16.8 136 156-307 37-245 (337)
158 cd00452 KDPG_aldolase KDPG and 79.2 42 0.00091 29.2 13.3 114 163-318 66-180 (190)
159 TIGR00259 thylakoid_BtpA membr 79.1 39 0.00086 31.3 11.8 32 153-184 21-52 (257)
160 TIGR02127 pyrF_sub2 orotidine 78.9 46 0.001 30.8 12.3 158 154-324 35-208 (261)
161 PF01207 Dus: Dihydrouridine s 78.9 7.8 0.00017 36.7 7.4 117 171-307 19-156 (309)
162 TIGR01463 mtaA_cmuA methyltran 78.8 61 0.0013 30.8 17.5 140 160-326 180-337 (340)
163 PRK02412 aroD 3-dehydroquinate 78.5 46 0.00099 30.6 12.2 102 163-269 98-206 (253)
164 TIGR02320 PEP_mutase phosphoen 78.2 61 0.0013 30.5 13.4 38 288-325 168-206 (285)
165 PRK07896 nicotinate-nucleotide 78.2 18 0.00039 34.1 9.4 65 165-242 211-275 (289)
166 TIGR02990 ectoine_eutA ectoine 78.0 15 0.00033 33.6 8.8 100 165-268 111-213 (239)
167 PRK00115 hemE uroporphyrinogen 78.0 66 0.0014 30.8 17.3 137 163-327 189-344 (346)
168 PF00701 DHDPS: Dihydrodipicol 77.8 59 0.0013 30.1 16.9 112 52-209 20-135 (289)
169 PRK13111 trpA tryptophan synth 77.7 59 0.0013 30.0 17.8 156 163-324 29-222 (258)
170 COG0826 Collagenase and relate 77.7 25 0.00054 34.1 10.5 139 163-310 16-173 (347)
171 PTZ00314 inosine-5'-monophosph 77.4 77 0.0017 32.2 14.4 58 163-231 293-365 (495)
172 PRK12999 pyruvate carboxylase; 77.3 73 0.0016 36.0 15.3 99 165-268 632-742 (1146)
173 cd04726 KGPDC_HPS 3-Keto-L-gul 77.2 48 0.001 28.7 14.9 109 165-307 69-184 (202)
174 COG0279 GmhA Phosphoheptose is 77.1 13 0.00028 32.2 7.4 88 122-215 40-149 (176)
175 PRK08195 4-hyroxy-2-oxovalerat 77.0 72 0.0016 30.7 19.3 76 236-326 105-184 (337)
176 cd03307 Mta_CmuA_like MtaA_Cmu 76.4 44 0.00096 31.6 11.9 25 165-189 236-260 (326)
177 cd08210 RLP_RrRLP Ribulose bis 76.3 79 0.0017 30.8 19.4 93 51-185 138-230 (364)
178 cd03174 DRE_TIM_metallolyase D 76.3 60 0.0013 29.3 15.2 98 164-268 78-198 (265)
179 cd00953 KDG_aldolase KDG (2-ke 76.2 66 0.0014 29.9 16.3 99 153-268 17-129 (279)
180 cd02810 DHOD_DHPD_FMN Dihydroo 76.2 65 0.0014 29.8 19.7 72 162-240 113-195 (289)
181 PRK12331 oxaloacetate decarbox 76.1 90 0.002 31.3 14.3 63 160-229 154-219 (448)
182 cd00945 Aldolase_Class_I Class 75.9 48 0.001 28.1 16.4 24 52-75 11-34 (201)
183 PF01487 DHquinase_I: Type I 3 75.6 37 0.0008 30.3 10.6 104 160-269 75-183 (224)
184 PRK09282 pyruvate carboxylase 75.4 99 0.0021 32.2 14.8 65 160-231 154-221 (592)
185 cd00717 URO-D Uroporphyrinogen 75.2 77 0.0017 30.1 17.5 135 163-325 180-334 (335)
186 cd04738 DHOD_2_like Dihydrooro 75.1 78 0.0017 30.1 16.7 80 157-243 145-239 (327)
187 cd04724 Tryptophan_synthase_al 75.0 66 0.0014 29.2 18.7 92 163-265 94-192 (242)
188 PF02548 Pantoate_transf: Keto 74.7 73 0.0016 29.6 14.5 116 124-265 76-202 (261)
189 COG5309 Exo-beta-1,3-glucanase 74.7 33 0.00071 32.1 9.8 44 140-186 243-286 (305)
190 PLN02433 uroporphyrinogen deca 74.5 83 0.0018 30.1 17.9 135 164-326 183-336 (345)
191 PRK05848 nicotinate-nucleotide 74.4 26 0.00055 32.8 9.3 66 164-242 193-258 (273)
192 PRK14042 pyruvate carboxylase 74.4 69 0.0015 33.4 13.3 125 51-230 92-220 (596)
193 TIGR01302 IMP_dehydrog inosine 74.1 71 0.0015 32.0 13.1 66 163-240 226-292 (450)
194 PF00290 Trp_syntA: Tryptophan 73.9 76 0.0016 29.4 16.5 160 54-265 24-203 (259)
195 TIGR01108 oadA oxaloacetate de 73.8 1.2E+02 0.0026 31.6 15.5 64 160-230 149-215 (582)
196 cd02803 OYE_like_FMN_family Ol 73.7 42 0.0009 31.7 11.0 28 54-81 33-60 (327)
197 PRK13396 3-deoxy-7-phosphohept 73.6 92 0.002 30.3 14.1 159 49-268 110-279 (352)
198 PRK05718 keto-hydroxyglutarate 73.6 68 0.0015 28.7 13.6 102 164-308 78-182 (212)
199 COG3457 Predicted amino acid r 73.6 49 0.0011 31.6 10.9 83 165-254 86-183 (353)
200 TIGR01235 pyruv_carbox pyruvat 73.4 89 0.0019 35.3 14.7 65 159-230 688-755 (1143)
201 TIGR01302 IMP_dehydrog inosine 73.3 76 0.0016 31.8 13.1 26 52-78 222-247 (450)
202 PF01208 URO-D: Uroporphyrinog 73.3 85 0.0018 29.7 13.7 141 158-326 180-342 (343)
203 TIGR01949 AroFGH_arch predicte 72.8 77 0.0017 29.0 15.4 125 164-312 94-228 (258)
204 COG5016 Pyruvate/oxaloacetate 72.5 50 0.0011 32.7 11.0 101 164-268 102-207 (472)
205 cd00958 DhnA Class I fructose- 72.5 30 0.00065 31.0 9.3 22 53-74 142-163 (235)
206 PRK06096 molybdenum transport 72.3 27 0.00059 32.8 9.0 67 163-242 199-265 (284)
207 cd02932 OYE_YqiM_FMN Old yello 72.3 92 0.002 29.7 16.2 136 156-306 33-258 (336)
208 cd02930 DCR_FMN 2,4-dienoyl-Co 72.0 96 0.0021 29.8 19.9 112 152-265 126-281 (353)
209 PRK05567 inosine 5'-monophosph 72.0 48 0.001 33.5 11.4 66 163-240 230-296 (486)
210 PRK12330 oxaloacetate decarbox 72.0 40 0.00086 34.3 10.7 65 160-230 155-223 (499)
211 PRK11858 aksA trans-homoaconit 71.7 1E+02 0.0022 30.0 15.9 110 64-213 85-198 (378)
212 TIGR01496 DHPS dihydropteroate 71.7 83 0.0018 29.0 14.9 56 154-209 142-204 (257)
213 TIGR01417 PTS_I_fam phosphoeno 71.5 1.2E+02 0.0025 31.5 14.2 38 160-197 367-407 (565)
214 PRK02506 dihydroorotate dehydr 71.2 25 0.00053 33.4 8.6 39 36-78 8-47 (310)
215 COG0167 PyrD Dihydroorotate de 71.0 74 0.0016 30.3 11.7 161 36-243 8-196 (310)
216 PRK15452 putative protease; Pr 70.9 79 0.0017 31.7 12.5 108 50-210 10-119 (443)
217 cd00950 DHDPS Dihydrodipicolin 70.9 88 0.0019 28.9 22.8 141 52-244 19-163 (284)
218 cd07940 DRE_TIM_IPMS 2-isoprop 70.6 88 0.0019 28.8 16.4 40 286-326 140-183 (268)
219 TIGR03128 RuMP_HxlA 3-hexulose 70.3 73 0.0016 27.7 14.5 94 163-269 15-112 (206)
220 TIGR02660 nifV_homocitr homoci 70.3 1.1E+02 0.0023 29.7 15.7 112 62-213 80-195 (365)
221 cd07944 DRE_TIM_HOA_like 4-hyd 70.3 91 0.002 28.8 17.6 158 138-326 5-178 (266)
222 PRK08318 dihydropyrimidine deh 70.3 63 0.0014 31.9 11.7 61 201-267 99-175 (420)
223 PRK09016 quinolinate phosphori 70.2 30 0.00065 32.7 8.8 64 163-242 218-281 (296)
224 PRK14040 oxaloacetate decarbox 70.1 1.4E+02 0.003 31.2 14.4 66 159-231 154-222 (593)
225 PF13714 PEP_mutase: Phosphoen 70.0 35 0.00075 31.2 9.0 124 184-325 53-191 (238)
226 cd03465 URO-D_like The URO-D _ 69.9 98 0.0021 29.0 16.1 90 56-189 170-259 (330)
227 PRK06106 nicotinate-nucleotide 69.9 29 0.00062 32.6 8.6 62 165-242 206-267 (281)
228 cd03309 CmuC_like CmuC_like. P 69.8 1E+02 0.0023 29.3 13.7 136 165-325 160-320 (321)
229 cd04739 DHOD_like Dihydroorota 69.4 28 0.00061 33.2 8.7 19 165-183 28-46 (325)
230 PRK12999 pyruvate carboxylase; 69.2 48 0.001 37.4 11.5 129 53-230 625-757 (1146)
231 PRK07807 inosine 5-monophospha 69.1 1.3E+02 0.0028 30.5 13.7 94 54-205 226-334 (479)
232 cd07939 DRE_TIM_NifV Streptomy 68.2 97 0.0021 28.3 15.0 97 166-268 75-190 (259)
233 TIGR01430 aden_deam adenosine 68.2 1.1E+02 0.0023 28.9 12.9 28 153-182 65-92 (324)
234 PRK07428 nicotinate-nucleotide 67.9 36 0.00078 32.1 8.8 67 163-242 206-272 (288)
235 cd00465 URO-D_CIMS_like The UR 67.8 1E+02 0.0022 28.5 16.1 69 164-243 212-285 (306)
236 PRK11613 folP dihydropteroate 67.7 1.1E+02 0.0024 28.7 15.0 115 125-271 14-144 (282)
237 cd04727 pdxS PdxS is a subunit 67.5 1.1E+02 0.0024 28.7 13.1 63 162-241 76-139 (283)
238 PRK08227 autoinducer 2 aldolas 67.4 1.1E+02 0.0023 28.5 13.2 118 167-311 101-226 (264)
239 TIGR00067 glut_race glutamate 67.1 1E+02 0.0022 28.2 12.3 53 148-205 36-89 (251)
240 PRK11858 aksA trans-homoaconit 67.1 1.3E+02 0.0028 29.3 15.0 98 165-268 80-196 (378)
241 cd03307 Mta_CmuA_like MtaA_Cmu 67.1 1.2E+02 0.0025 28.8 16.9 137 163-325 174-325 (326)
242 TIGR01919 hisA-trpF 1-(5-phosp 66.9 86 0.0019 28.6 11.0 97 163-265 86-198 (243)
243 COG0434 SgcQ Predicted TIM-bar 66.6 13 0.00028 34.1 5.3 31 154-184 28-58 (263)
244 TIGR01740 pyrF orotidine 5'-ph 66.6 71 0.0015 28.3 10.2 35 165-199 68-102 (213)
245 CHL00200 trpA tryptophan synth 66.4 88 0.0019 29.0 11.0 99 216-325 56-168 (263)
246 PRK03170 dihydrodipicolinate s 66.3 1.1E+02 0.0024 28.3 19.4 149 52-252 20-174 (292)
247 PF00478 IMPDH: IMP dehydrogen 66.2 19 0.00041 35.0 6.7 62 123-208 94-156 (352)
248 PRK02412 aroD 3-dehydroquinate 66.1 1.1E+02 0.0023 28.1 15.7 134 154-305 26-168 (253)
249 cd07940 DRE_TIM_IPMS 2-isoprop 66.1 1.1E+02 0.0024 28.1 15.2 68 160-231 143-213 (268)
250 PRK13585 1-(5-phosphoribosyl)- 66.1 62 0.0013 29.0 9.9 100 163-265 88-198 (241)
251 PTZ00314 inosine-5'-monophosph 65.9 1.6E+02 0.0034 30.0 15.5 64 163-238 243-307 (495)
252 cd04723 HisA_HisF Phosphoribos 65.8 75 0.0016 28.7 10.3 98 163-265 90-194 (233)
253 COG5564 Predicted TIM-barrel e 65.8 27 0.00059 31.6 7.1 86 20-109 123-219 (276)
254 PRK08883 ribulose-phosphate 3- 65.5 1E+02 0.0022 27.7 13.3 105 162-270 14-142 (220)
255 cd07944 DRE_TIM_HOA_like 4-hyd 65.3 1.2E+02 0.0025 28.1 15.1 95 165-268 87-191 (266)
256 PF01408 GFO_IDH_MocA: Oxidore 65.0 29 0.00063 27.1 6.8 44 162-208 75-120 (120)
257 cd00381 IMPDH IMPDH: The catal 65.0 1.2E+02 0.0026 28.9 12.1 66 163-240 96-162 (325)
258 PF01081 Aldolase: KDPG and KH 64.7 1E+02 0.0022 27.3 10.6 106 163-308 70-175 (196)
259 cd04823 ALAD_PBGS_aspartate_ri 64.6 1.3E+02 0.0029 28.6 17.5 225 53-306 53-307 (320)
260 PRK00915 2-isopropylmalate syn 64.6 1.7E+02 0.0037 29.8 17.2 126 51-213 76-206 (513)
261 COG1831 Predicted metal-depend 64.4 1.2E+02 0.0027 28.2 11.7 141 40-209 40-193 (285)
262 cd00408 DHDPS-like Dihydrodipi 64.4 1.2E+02 0.0025 27.9 24.1 150 52-253 16-171 (281)
263 PRK02261 methylaspartate mutas 64.1 82 0.0018 26.0 13.3 85 218-320 39-129 (137)
264 TIGR01182 eda Entner-Doudoroff 64.0 1.1E+02 0.0023 27.3 14.4 112 163-314 70-181 (204)
265 PLN02495 oxidoreductase, actin 63.6 1E+02 0.0022 30.3 11.4 58 201-267 113-189 (385)
266 TIGR00222 panB 3-methyl-2-oxob 63.6 54 0.0012 30.5 9.0 72 125-208 129-201 (263)
267 COG1794 RacX Aspartate racemas 63.6 1.2E+02 0.0026 27.6 12.2 181 87-312 9-199 (230)
268 cd07947 DRE_TIM_Re_CS Clostrid 63.4 1.3E+02 0.0028 28.1 14.2 139 51-231 75-227 (279)
269 cd03312 CIMS_N_terminal_like C 63.4 1.5E+02 0.0032 28.7 14.2 135 155-312 177-323 (360)
270 PLN02417 dihydrodipicolinate s 63.2 1.3E+02 0.0028 27.9 13.7 47 52-103 20-66 (280)
271 PRK01033 imidazole glycerol ph 63.1 1E+02 0.0022 28.2 10.9 96 165-265 88-201 (258)
272 PF00977 His_biosynth: Histidi 63.1 20 0.00043 32.4 6.0 98 163-265 85-196 (229)
273 COG0107 HisF Imidazoleglycerol 62.8 1.2E+02 0.0026 27.8 10.6 103 166-271 89-210 (256)
274 PRK08318 dihydropyrimidine deh 62.7 1.6E+02 0.0035 29.0 15.9 71 163-242 116-202 (420)
275 PRK14041 oxaloacetate decarbox 62.6 1.8E+02 0.0039 29.4 15.0 64 160-230 153-219 (467)
276 PRK06278 cobyrinic acid a,c-di 62.6 80 0.0017 32.0 10.7 91 169-268 313-418 (476)
277 TIGR01163 rpe ribulose-phospha 62.5 1E+02 0.0023 26.7 11.8 50 161-211 12-66 (210)
278 TIGR01334 modD putative molybd 62.4 58 0.0013 30.5 9.1 67 163-242 198-264 (277)
279 cd00381 IMPDH IMPDH: The catal 62.3 1.3E+02 0.0028 28.8 11.7 65 163-240 146-225 (325)
280 cd02811 IDI-2_FMN Isopentenyl- 62.3 59 0.0013 31.0 9.4 102 190-313 101-215 (326)
281 PRK13125 trpA tryptophan synth 61.9 1.3E+02 0.0027 27.4 19.9 91 163-263 91-188 (244)
282 TIGR03572 WbuZ glycosyl amidat 61.8 1.2E+02 0.0026 27.1 11.6 96 165-265 88-202 (232)
283 TIGR00035 asp_race aspartate r 61.6 1.1E+02 0.0023 27.4 10.6 132 155-311 57-197 (229)
284 COG1038 PycA Pyruvate carboxyl 61.3 1.4E+02 0.0029 32.5 12.1 96 167-266 637-743 (1149)
285 cd06556 ICL_KPHMT Members of t 61.3 1.3E+02 0.0029 27.4 14.4 96 163-267 92-198 (240)
286 PLN02746 hydroxymethylglutaryl 61.2 1.6E+02 0.0035 28.5 15.0 102 164-267 125-248 (347)
287 PRK09358 adenosine deaminase; 61.1 1.5E+02 0.0033 28.1 13.7 31 153-185 74-104 (340)
288 PRK00125 pyrF orotidine 5'-pho 61.0 1.1E+02 0.0025 28.5 10.8 176 127-325 16-211 (278)
289 PRK06559 nicotinate-nucleotide 60.6 59 0.0013 30.7 8.8 63 164-242 208-270 (290)
290 cd02072 Glm_B12_BD B12 binding 60.3 96 0.0021 25.5 10.0 83 219-319 36-124 (128)
291 PRK11430 putative CoA-transfer 60.2 21 0.00046 34.9 6.1 43 65-137 91-133 (381)
292 PRK06052 5-methyltetrahydropte 59.8 1.3E+02 0.0029 29.0 11.1 226 55-313 39-318 (344)
293 cd04747 OYE_like_5_FMN Old yel 59.3 1.7E+02 0.0036 28.5 12.0 59 248-311 197-257 (361)
294 PLN02591 tryptophan synthase 58.8 1.5E+02 0.0032 27.3 15.7 156 162-323 18-210 (250)
295 PLN02446 (5-phosphoribosyl)-5- 58.8 82 0.0018 29.3 9.3 100 164-265 95-212 (262)
296 PRK11320 prpB 2-methylisocitra 58.6 1.6E+02 0.0036 27.7 12.7 97 163-267 96-209 (292)
297 PF00478 IMPDH: IMP dehydrogen 58.4 1.2E+02 0.0027 29.4 10.7 115 59-242 112-241 (352)
298 PF03102 NeuB: NeuB family; I 58.3 1E+02 0.0022 28.3 9.7 93 160-265 56-177 (241)
299 PRK09283 delta-aminolevulinic 58.3 1.8E+02 0.0038 27.9 20.0 223 53-306 58-310 (323)
300 COG0106 HisA Phosphoribosylfor 58.0 1.2E+02 0.0026 27.9 10.0 99 163-265 87-196 (241)
301 PRK00784 cobyric acid synthase 57.8 90 0.0019 31.6 10.2 97 153-262 110-219 (488)
302 cd00384 ALAD_PBGS Porphobilino 57.7 1.8E+02 0.0038 27.8 19.2 223 53-306 50-302 (314)
303 cd00331 IGPS Indole-3-glycerol 57.7 1.3E+02 0.0029 26.4 15.4 86 164-265 85-177 (217)
304 PRK05398 formyl-coenzyme A tra 57.6 29 0.00062 34.4 6.5 40 50-94 74-113 (416)
305 TIGR01036 pyrD_sub2 dihydrooro 57.6 1.8E+02 0.0039 27.9 11.8 106 180-303 114-238 (335)
306 TIGR03253 oxalate_frc formyl-C 57.4 30 0.00066 34.2 6.7 56 50-137 73-128 (415)
307 TIGR03151 enACPred_II putative 57.0 1.6E+02 0.0035 27.8 11.3 84 163-265 77-166 (307)
308 PRK14114 1-(5-phosphoribosyl)- 56.8 1.2E+02 0.0026 27.7 10.0 96 163-265 85-193 (241)
309 PLN00124 succinyl-CoA ligase [ 56.5 75 0.0016 31.7 9.2 72 148-231 323-398 (422)
310 PRK08195 4-hyroxy-2-oxovalerat 56.5 1.9E+02 0.0041 27.8 21.5 95 165-268 93-197 (337)
311 PRK00208 thiG thiazole synthas 56.2 1.7E+02 0.0036 27.0 15.3 28 50-80 20-47 (250)
312 TIGR03855 NAD_NadX aspartate d 56.1 37 0.00081 30.8 6.5 45 160-207 48-95 (229)
313 TIGR01303 IMP_DH_rel_1 IMP deh 56.0 70 0.0015 32.4 9.0 67 161-239 225-292 (475)
314 cd07938 DRE_TIM_HMGL 3-hydroxy 55.8 1.7E+02 0.0038 27.1 16.1 102 165-268 78-201 (274)
315 KOG0564 5,10-methylenetetrahyd 55.7 41 0.00089 34.0 7.0 46 164-209 172-217 (590)
316 COG5016 Pyruvate/oxaloacetate 55.7 1.7E+02 0.0037 29.1 11.1 64 160-230 156-222 (472)
317 PRK14847 hypothetical protein; 55.2 1.7E+02 0.0036 28.3 11.0 22 58-79 58-79 (333)
318 PRK06978 nicotinate-nucleotide 55.1 89 0.0019 29.6 9.0 64 163-242 215-278 (294)
319 PRK04452 acetyl-CoA decarbonyl 55.0 2E+02 0.0043 27.6 11.4 52 157-209 65-132 (319)
320 cd01320 ADA Adenosine deaminas 54.9 1.9E+02 0.004 27.1 13.6 108 153-266 66-192 (325)
321 cd01981 Pchlide_reductase_B Pc 54.8 58 0.0012 32.2 8.2 23 303-325 165-189 (430)
322 cd06822 PLPDE_III_YBL036c_euk 54.6 82 0.0018 28.5 8.5 79 164-245 79-164 (227)
323 TIGR02321 Pphn_pyruv_hyd phosp 54.5 24 0.00052 33.3 5.1 40 163-205 169-209 (290)
324 PRK12858 tagatose 1,6-diphosph 54.5 2.1E+02 0.0045 27.6 13.0 117 61-207 113-247 (340)
325 COG0407 HemE Uroporphyrinogen- 54.4 2.1E+02 0.0046 27.7 15.5 191 95-327 124-348 (352)
326 cd00502 DHQase_I Type I 3-dehy 54.3 1.6E+02 0.0034 26.2 11.5 100 163-269 79-183 (225)
327 TIGR02317 prpB methylisocitrat 54.3 1.9E+02 0.0042 27.1 13.8 98 163-268 91-205 (285)
328 PRK06498 isocitrate lyase; Pro 54.1 28 0.0006 35.2 5.6 29 170-198 342-371 (531)
329 PRK05096 guanosine 5'-monophos 53.9 2.2E+02 0.0047 27.6 11.5 119 51-240 108-241 (346)
330 cd00717 URO-D Uroporphyrinogen 53.5 2E+02 0.0044 27.2 12.2 26 164-189 242-267 (335)
331 cd03465 URO-D_like The URO-D _ 53.5 1.9E+02 0.0042 27.0 17.3 143 156-325 164-329 (330)
332 TIGR01093 aroD 3-dehydroquinat 53.3 1.7E+02 0.0036 26.2 14.3 145 164-322 16-169 (228)
333 PRK06015 keto-hydroxyglutarate 53.2 1.7E+02 0.0036 26.1 12.8 103 163-308 66-171 (201)
334 cd01966 Nitrogenase_NifN_1 Nit 53.1 61 0.0013 32.1 8.0 23 303-326 160-182 (417)
335 TIGR00683 nanA N-acetylneurami 53.1 2E+02 0.0042 26.9 18.5 149 52-252 19-175 (290)
336 PRK05742 nicotinate-nucleotide 52.9 86 0.0019 29.4 8.5 63 164-242 200-262 (277)
337 PRK06252 methylcobalamin:coenz 52.8 2.1E+02 0.0045 27.1 15.9 40 287-326 292-335 (339)
338 TIGR00284 dihydropteroate synt 52.8 2.4E+02 0.0052 28.8 12.2 47 160-209 165-214 (499)
339 COG0113 HemB Delta-aminolevuli 52.5 2.2E+02 0.0047 27.2 18.4 225 54-306 61-315 (330)
340 cd04729 NanE N-acetylmannosami 52.5 1.6E+02 0.0034 26.0 10.0 57 202-265 9-65 (219)
341 COG1804 CaiB Predicted acyl-Co 52.1 32 0.0007 33.9 5.7 28 63-93 86-113 (396)
342 COG0157 NadC Nicotinate-nucleo 51.7 1.2E+02 0.0027 28.3 9.2 66 163-242 198-263 (280)
343 TIGR01093 aroD 3-dehydroquinat 51.4 1.8E+02 0.0039 26.0 11.7 95 170-269 89-188 (228)
344 cd07941 DRE_TIM_LeuA3 Desulfob 51.4 2E+02 0.0044 26.5 14.9 98 165-268 83-203 (273)
345 PRK06543 nicotinate-nucleotide 51.3 95 0.0021 29.2 8.5 63 164-242 204-266 (281)
346 PLN02424 ketopantoate hydroxym 51.2 87 0.0019 30.1 8.3 72 125-208 151-223 (332)
347 PRK13533 7-cyano-7-deazaguanin 51.2 2.8E+02 0.0061 28.2 14.0 117 51-207 102-225 (487)
348 PLN02321 2-isopropylmalate syn 51.1 3.2E+02 0.007 28.8 16.4 144 163-327 111-281 (632)
349 PF00248 Aldo_ket_red: Aldo/ke 50.9 1.9E+02 0.0042 26.2 15.1 223 50-324 13-266 (283)
350 TIGR00315 cdhB CO dehydrogenas 50.9 1.3E+02 0.0029 25.7 8.7 122 165-300 20-161 (162)
351 PF06187 DUF993: Protein of un 50.8 62 0.0013 31.2 7.1 91 87-209 86-186 (382)
352 KOG2794 Delta-aminolevulinic a 50.7 13 0.00028 34.6 2.6 25 50-74 303-327 (340)
353 TIGR02090 LEU1_arch isopropylm 50.6 2.4E+02 0.0053 27.3 15.2 118 52-213 73-194 (363)
354 PLN02334 ribulose-phosphate 3- 50.6 1.9E+02 0.004 25.9 12.6 48 162-210 22-74 (229)
355 PRK05222 5-methyltetrahydropte 50.5 3.5E+02 0.0077 29.1 13.9 33 163-198 650-682 (758)
356 COG0796 MurI Glutamate racemas 50.4 2E+02 0.0044 26.8 10.4 144 153-320 47-194 (269)
357 cd04724 Tryptophan_synthase_al 50.3 2E+02 0.0043 26.1 11.0 19 162-180 16-34 (242)
358 cd02803 OYE_like_FMN_family Ol 50.1 2.2E+02 0.0048 26.7 17.9 113 151-265 129-286 (327)
359 PRK03525 crotonobetainyl-CoA:c 49.7 46 0.00099 32.9 6.5 57 50-138 73-129 (405)
360 TIGR03849 arch_ComA phosphosul 49.6 1.2E+02 0.0026 27.7 8.7 130 172-324 23-183 (237)
361 PLN02520 bifunctional 3-dehydr 49.5 2.3E+02 0.0049 29.0 11.7 99 163-268 100-200 (529)
362 PRK00748 1-(5-phosphoribosyl)- 49.5 1.9E+02 0.0041 25.6 12.1 78 165-255 35-120 (233)
363 cd06824 PLPDE_III_Yggs_like Py 49.4 1.1E+02 0.0023 27.4 8.3 65 178-243 95-162 (224)
364 cd04728 ThiG Thiazole synthase 49.4 2.2E+02 0.0047 26.3 15.2 28 50-80 19-46 (248)
365 PTZ00344 pyridoxal kinase; Pro 49.1 1.2E+02 0.0027 28.1 9.1 78 151-228 55-135 (296)
366 PF03481 SUA5: Putative GTP-bi 49.0 25 0.00055 28.5 3.9 44 154-197 79-122 (125)
367 TIGR01371 met_syn_B12ind 5-met 48.8 3.3E+02 0.0071 29.3 13.1 135 155-311 173-317 (750)
368 cd01568 QPRTase_NadC Quinolina 48.8 82 0.0018 29.2 7.7 62 165-240 193-254 (269)
369 PRK14024 phosphoribosyl isomer 48.6 1.9E+02 0.004 26.2 9.9 100 163-270 87-198 (241)
370 cd01965 Nitrogenase_MoFe_beta_ 48.4 62 0.0014 32.0 7.3 97 220-325 67-179 (428)
371 PF02548 Pantoate_transf: Keto 48.4 1.7E+02 0.0036 27.2 9.5 56 125-185 131-187 (261)
372 cd04823 ALAD_PBGS_aspartate_ri 48.4 15 0.00033 34.9 2.7 25 50-74 286-310 (320)
373 PRK07226 fructose-bisphosphate 48.2 2.2E+02 0.0048 26.1 16.5 126 165-313 98-233 (267)
374 cd03308 CmuA_CmuC_like CmuA_Cm 48.2 2.7E+02 0.0058 27.1 14.0 25 164-189 281-307 (378)
375 KOG2733 Uncharacterized membra 48.0 2.4E+02 0.0051 27.8 10.6 61 183-254 41-104 (423)
376 cd03311 CIMS_C_terminal_like C 48.0 2.5E+02 0.0053 26.5 14.1 142 156-313 151-312 (332)
377 cd01572 QPRTase Quinolinate ph 48.0 91 0.002 28.9 7.9 63 164-242 193-255 (268)
378 cd04824 eu_ALAD_PBGS_cysteine_ 47.9 16 0.00034 34.8 2.7 25 50-74 287-311 (320)
379 TIGR00640 acid_CoA_mut_C methy 47.8 32 0.0007 28.3 4.3 37 287-326 41-79 (132)
380 TIGR00674 dapA dihydrodipicoli 47.8 2.3E+02 0.005 26.2 18.5 148 53-252 18-171 (285)
381 cd00384 ALAD_PBGS Porphobilino 47.7 16 0.00035 34.6 2.8 25 50-74 281-305 (314)
382 cd04733 OYE_like_2_FMN Old yel 47.7 1.1E+02 0.0024 29.1 8.7 50 248-306 202-253 (338)
383 PRK13384 delta-aminolevulinic 47.7 16 0.00035 34.7 2.8 25 50-74 290-314 (322)
384 PF00290 Trp_syntA: Tryptophan 47.6 1.7E+02 0.0037 27.1 9.5 97 216-323 51-162 (259)
385 TIGR02313 HpaI-NOT-DapA 2,4-di 47.4 2.4E+02 0.0052 26.3 24.2 142 52-244 19-165 (294)
386 cd02933 OYE_like_FMN Old yello 47.2 2.7E+02 0.0058 26.7 11.7 97 222-325 154-285 (338)
387 PRK10481 hypothetical protein; 47.1 2.2E+02 0.0048 25.8 10.1 91 215-325 61-179 (224)
388 PRK00278 trpC indole-3-glycero 47.1 1.5E+02 0.0032 27.3 9.1 64 164-242 124-188 (260)
389 cd00429 RPE Ribulose-5-phospha 46.9 1.9E+02 0.0041 24.9 16.4 50 162-212 14-68 (211)
390 TIGR03217 4OH_2_O_val_ald 4-hy 46.8 2.7E+02 0.0059 26.7 21.4 95 165-268 92-196 (333)
391 COG1830 FbaB DhnA-type fructos 46.7 1.2E+02 0.0026 28.2 8.2 66 52-168 164-229 (265)
392 PF01180 DHO_dh: Dihydroorotat 46.6 1.1E+02 0.0025 28.4 8.4 50 159-210 111-171 (295)
393 COG0107 HisF Imidazoleglycerol 46.5 2.4E+02 0.0051 25.9 13.2 146 166-324 36-198 (256)
394 PRK06843 inosine 5-monophospha 46.3 3.1E+02 0.0067 27.2 14.4 18 163-180 205-222 (404)
395 cd04735 OYE_like_4_FMN Old yel 46.1 2.8E+02 0.006 26.7 12.2 113 152-265 133-289 (353)
396 PRK09389 (R)-citramalate synth 46.1 3.4E+02 0.0073 27.6 15.3 51 160-213 143-196 (488)
397 PRK04128 1-(5-phosphoribosyl)- 46.0 2.3E+02 0.0049 25.6 12.2 75 163-244 85-165 (228)
398 PF01136 Peptidase_U32: Peptid 45.9 2.1E+02 0.0046 25.3 10.2 79 162-259 4-82 (233)
399 TIGR01464 hemE uroporphyrinoge 45.8 2.7E+02 0.0058 26.4 17.2 134 163-325 183-337 (338)
400 PRK08610 fructose-bisphosphate 45.7 1.4E+02 0.003 28.1 8.7 27 216-244 84-110 (286)
401 COG0325 Predicted enzyme with 45.6 2E+02 0.0044 26.1 9.3 89 165-257 86-182 (228)
402 cd00954 NAL N-Acetylneuraminic 45.5 2.5E+02 0.0055 26.0 23.3 142 52-244 19-165 (288)
403 TIGR02631 xylA_Arthro xylose i 45.1 3.1E+02 0.0067 26.8 15.2 86 154-241 148-245 (382)
404 PRK05692 hydroxymethylglutaryl 44.8 2.7E+02 0.0058 26.1 16.4 100 167-268 86-207 (287)
405 TIGR02129 hisA_euk phosphoribo 44.6 2.1E+02 0.0045 26.5 9.5 99 164-265 88-206 (253)
406 cd01573 modD_like ModD; Quinol 44.6 1.4E+02 0.003 27.8 8.5 57 169-238 199-255 (272)
407 TIGR02311 HpaI 2,4-dihydroxyhe 44.4 2.2E+02 0.0047 26.0 9.7 80 164-256 24-107 (249)
408 PRK09250 fructose-bisphosphate 44.2 3.1E+02 0.0067 26.6 14.2 81 167-251 153-248 (348)
409 PRK07565 dihydroorotate dehydr 44.1 2.9E+02 0.0063 26.3 20.5 71 163-242 117-199 (334)
410 TIGR01036 pyrD_sub2 dihydrooro 44.1 3E+02 0.0064 26.4 16.2 77 160-243 154-247 (335)
411 TIGR00044 pyridoxal phosphate 44.0 1.3E+02 0.0029 26.9 8.2 65 179-244 98-165 (229)
412 KOG4175 Tryptophan synthase al 43.8 2.4E+02 0.0053 25.3 11.4 36 163-199 113-148 (268)
413 PRK05458 guanosine 5'-monophos 43.7 3E+02 0.0066 26.4 13.8 92 163-265 51-145 (326)
414 PRK07114 keto-hydroxyglutarate 43.7 2.5E+02 0.0054 25.4 10.9 58 163-240 81-138 (222)
415 PF07302 AroM: AroM protein; 43.7 65 0.0014 29.2 5.9 42 163-208 168-209 (221)
416 COG0159 TrpA Tryptophan syntha 43.6 2.8E+02 0.006 25.9 15.2 159 162-325 33-228 (265)
417 TIGR03151 enACPred_II putative 43.6 1.7E+02 0.0037 27.7 9.1 43 223-265 25-67 (307)
418 PF00490 ALAD: Delta-aminolevu 43.6 19 0.00042 34.3 2.6 25 50-74 291-315 (324)
419 PRK12344 putative alpha-isopro 43.5 3.8E+02 0.0082 27.5 16.5 116 61-213 92-211 (524)
420 TIGR03569 NeuB_NnaB N-acetylne 43.5 1.4E+02 0.0031 28.6 8.6 93 163-265 99-199 (329)
421 PF13653 GDPD_2: Glycerophosph 43.4 29 0.00063 21.1 2.5 16 59-74 12-27 (30)
422 PLN02716 nicotinate-nucleotide 43.3 1.7E+02 0.0036 28.0 8.8 64 164-242 214-291 (308)
423 PRK07709 fructose-bisphosphate 43.2 1.9E+02 0.0041 27.2 9.2 27 216-244 84-110 (285)
424 TIGR00036 dapB dihydrodipicoli 43.2 71 0.0015 29.5 6.4 49 160-210 79-127 (266)
425 PRK10558 alpha-dehydro-beta-de 43.0 2.2E+02 0.0048 26.2 9.6 44 164-209 31-77 (256)
426 cd03309 CmuC_like CmuC_like. P 42.8 3.1E+02 0.0066 26.2 12.2 25 164-188 225-250 (321)
427 TIGR03581 EF_0839 conserved hy 42.8 2.6E+02 0.0057 25.4 9.8 41 285-325 185-235 (236)
428 cd03308 CmuA_CmuC_like CmuA_Cm 42.6 3.3E+02 0.0071 26.5 15.5 39 287-325 329-377 (378)
429 TIGR00561 pntA NAD(P) transhyd 42.5 97 0.0021 31.7 7.6 37 163-199 98-149 (511)
430 PRK06464 phosphoenolpyruvate s 42.3 4.8E+02 0.01 28.3 14.9 40 160-199 617-662 (795)
431 TIGR02321 Pphn_pyruv_hyd phosp 41.9 3E+02 0.0066 25.9 13.5 38 288-325 165-203 (290)
432 TIGR01037 pyrD_sub1_fam dihydr 41.8 2.9E+02 0.0063 25.6 20.7 69 163-240 106-188 (300)
433 COG1646 Predicted phosphate-bi 41.6 58 0.0013 29.7 5.2 45 163-208 31-77 (240)
434 cd01971 Nitrogenase_VnfN_like 41.5 1.2E+02 0.0026 30.0 8.1 53 186-243 72-125 (427)
435 cd07948 DRE_TIM_HCS Saccharomy 41.4 2.9E+02 0.0063 25.5 14.7 98 165-268 76-192 (262)
436 TIGR01418 PEP_synth phosphoeno 41.2 5E+02 0.011 28.1 14.7 41 159-199 609-655 (782)
437 TIGR00313 cobQ cobyric acid sy 41.1 1.8E+02 0.004 29.3 9.4 83 172-262 121-216 (475)
438 COG1856 Uncharacterized homolo 41.0 79 0.0017 28.9 5.9 28 98-137 205-232 (275)
439 TIGR01361 DAHP_synth_Bsub phos 40.9 2.9E+02 0.0064 25.4 10.6 28 49-76 34-61 (260)
440 PRK09283 delta-aminolevulinic 40.8 24 0.00052 33.6 2.8 25 50-74 289-313 (323)
441 TIGR03239 GarL 2-dehydro-3-deo 40.8 2.5E+02 0.0055 25.7 9.5 80 164-256 24-107 (249)
442 PRK12595 bifunctional 3-deoxy- 40.8 3.5E+02 0.0076 26.3 14.8 29 49-77 127-155 (360)
443 PF04412 DUF521: Protein of un 39.9 3.8E+02 0.0083 26.5 11.6 125 171-312 211-358 (400)
444 COG0673 MviM Predicted dehydro 39.2 66 0.0014 30.1 5.7 45 161-208 79-125 (342)
445 TIGR02370 pyl_corrinoid methyl 39.2 1.9E+02 0.004 25.4 8.1 41 217-258 119-162 (197)
446 cd02070 corrinoid_protein_B12- 39.1 2.6E+02 0.0057 24.4 10.0 72 176-259 84-161 (201)
447 PRK05718 keto-hydroxyglutarate 39.1 2.8E+02 0.0062 24.7 12.8 32 163-197 30-62 (212)
448 TIGR00078 nadC nicotinate-nucl 38.9 1.4E+02 0.003 27.7 7.6 61 164-240 189-249 (265)
449 cd01573 modD_like ModD; Quinol 38.9 3.2E+02 0.007 25.3 11.5 85 189-307 171-256 (272)
450 TIGR01306 GMP_reduct_2 guanosi 38.9 42 0.00091 32.1 4.2 39 286-325 66-104 (321)
451 cd04741 DHOD_1A_like Dihydroor 38.9 3.3E+02 0.0072 25.4 19.4 128 173-326 119-292 (294)
452 PF00549 Ligase_CoA: CoA-ligas 38.6 40 0.00088 28.6 3.6 75 216-304 55-138 (153)
453 PRK04302 triosephosphate isome 38.5 2.8E+02 0.0062 24.6 9.7 80 165-255 126-218 (223)
454 cd02801 DUS_like_FMN Dihydrour 38.0 2.8E+02 0.006 24.3 13.1 97 163-265 70-188 (231)
455 PLN02433 uroporphyrinogen deca 37.9 3.7E+02 0.008 25.7 16.5 84 165-258 245-337 (345)
456 PRK12435 ferrochelatase; Provi 37.6 1.3E+02 0.0029 28.5 7.4 69 248-326 234-305 (311)
457 cd01129 PulE-GspE PulE/GspE Th 37.5 1.9E+02 0.004 26.7 8.2 59 161-231 137-195 (264)
458 PF01717 Meth_synt_2: Cobalami 37.3 3.6E+02 0.0078 25.4 10.7 150 154-324 148-315 (324)
459 COG0113 HemB Delta-aminolevuli 37.1 30 0.00064 32.8 2.7 25 50-74 294-318 (330)
460 cd07948 DRE_TIM_HCS Saccharomy 37.1 3.4E+02 0.0073 25.0 15.3 133 51-231 72-208 (262)
461 TIGR00736 nifR3_rel_arch TIM-b 37.0 3.2E+02 0.007 24.8 12.1 79 182-270 117-199 (231)
462 TIGR01862 N2-ase-Ialpha nitrog 37.0 2.1E+02 0.0045 28.5 9.0 57 184-243 101-158 (443)
463 TIGR00676 fadh2 5,10-methylene 36.9 3.4E+02 0.0074 25.0 10.2 149 20-209 31-193 (272)
464 cd04733 OYE_like_2_FMN Old yel 36.8 3.8E+02 0.0082 25.5 20.0 113 151-265 137-297 (338)
465 PLN02826 dihydroorotate dehydr 36.6 4.4E+02 0.0095 26.2 14.5 143 156-325 200-389 (409)
466 cd07945 DRE_TIM_CMS Leptospira 36.4 3.6E+02 0.0078 25.1 14.3 133 64-238 84-220 (280)
467 PF01791 DeoC: DeoC/LacD famil 36.4 1.1E+02 0.0024 27.4 6.4 108 185-311 111-230 (236)
468 cd06818 PLPDE_III_cryptic_DSD 36.3 2.9E+02 0.0063 26.8 9.8 75 164-243 87-167 (382)
469 cd04727 pdxS PdxS is a subunit 36.3 3.7E+02 0.0081 25.3 11.7 126 163-324 18-161 (283)
470 cd04731 HisF The cyclase subun 36.1 3.2E+02 0.0069 24.4 14.6 96 165-265 85-198 (243)
471 PRK10128 2-keto-3-deoxy-L-rham 35.9 3.6E+02 0.0078 25.0 9.8 44 164-209 30-76 (267)
472 TIGR01285 nifN nitrogenase mol 35.9 4.5E+02 0.0097 26.1 11.3 55 186-244 77-136 (432)
473 PRK07094 biotin synthase; Prov 35.8 1.9E+02 0.0041 27.1 8.2 78 163-245 129-219 (323)
474 PF07287 DUF1446: Protein of u 35.6 2E+02 0.0043 28.1 8.3 142 139-306 1-164 (362)
475 cd01977 Nitrogenase_VFe_alpha 35.6 1.8E+02 0.004 28.5 8.3 54 186-244 73-130 (415)
476 TIGR03249 KdgD 5-dehydro-4-deo 35.6 3.7E+02 0.008 25.0 23.4 142 52-252 24-175 (296)
477 PRK05222 5-methyltetrahydropte 35.6 5.6E+02 0.012 27.6 12.4 80 155-244 179-266 (758)
478 PRK11579 putative oxidoreducta 35.5 1.2E+02 0.0026 28.9 6.8 46 161-209 76-123 (346)
479 TIGR01501 MthylAspMutase methy 35.5 2.6E+02 0.0056 23.2 13.1 84 218-319 37-126 (134)
480 cd02930 DCR_FMN 2,4-dienoyl-Co 35.2 3.5E+02 0.0077 25.9 10.1 166 86-268 125-314 (353)
481 PF01729 QRPTase_C: Quinolinat 35.1 2.9E+02 0.0063 23.7 9.3 87 189-307 67-153 (169)
482 TIGR03586 PseI pseudaminic aci 34.8 2.9E+02 0.0062 26.5 9.2 92 164-265 101-198 (327)
483 PRK14046 malate--CoA ligase su 34.6 2.9E+02 0.0063 27.1 9.4 27 54-80 179-205 (392)
484 PRK07028 bifunctional hexulose 34.6 4.6E+02 0.01 25.8 14.8 89 165-265 73-167 (430)
485 PRK08883 ribulose-phosphate 3- 34.6 3.4E+02 0.0074 24.3 12.5 68 163-243 71-140 (220)
486 COG1679 Predicted aconitase [G 34.4 1E+02 0.0022 30.2 5.9 55 153-209 271-328 (403)
487 cd03466 Nitrogenase_NifN_2 Nit 34.4 1.8E+02 0.0039 28.8 8.1 23 302-326 157-179 (429)
488 PRK01033 imidazole glycerol ph 34.2 3.7E+02 0.0079 24.6 13.4 79 164-255 34-120 (258)
489 cd07943 DRE_TIM_HOA 4-hydroxy- 34.1 3.7E+02 0.0079 24.5 18.3 78 234-326 98-181 (263)
490 PRK13575 3-dehydroquinate dehy 34.1 3.6E+02 0.0078 24.5 11.9 94 172-270 96-198 (238)
491 cd01571 NAPRTase_B Nicotinate 34.1 2.8E+02 0.0061 26.2 8.9 60 173-243 211-275 (302)
492 PLN03228 methylthioalkylmalate 33.9 5.3E+02 0.012 26.4 16.1 54 160-213 239-296 (503)
493 cd08207 RLP_NonPhot Ribulose b 33.8 4E+02 0.0086 26.4 10.2 99 160-268 159-268 (406)
494 cd06843 PLPDE_III_PvsE_like Ty 33.8 3.3E+02 0.0072 26.2 9.7 75 165-242 83-171 (377)
495 PRK09140 2-dehydro-3-deoxy-6-p 33.8 3.4E+02 0.0073 24.0 11.5 41 163-207 25-66 (206)
496 TIGR01346 isocit_lyase isocitr 33.7 53 0.0012 33.5 4.1 27 172-198 378-405 (527)
497 PF07829 Toxin_14: Alpha-A con 33.6 18 0.00038 20.7 0.4 8 308-315 1-8 (26)
498 PRK12457 2-dehydro-3-deoxyphos 33.5 42 0.0009 31.5 3.1 29 160-188 217-245 (281)
499 PRK12737 gatY tagatose-bisphos 33.5 4.1E+02 0.0089 24.9 16.0 27 216-244 81-107 (284)
500 TIGR02090 LEU1_arch isopropylm 33.4 4.5E+02 0.0098 25.4 18.0 40 286-326 138-181 (363)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=2.9e-84 Score=616.52 Aligned_cols=322 Identities=66% Similarity=1.103 Sum_probs=293.4
Q ss_pred cchHHHHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHh
Q 020275 6 TTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLS 85 (328)
Q Consensus 6 ~~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~ 85 (328)
.|++.|+++|++.++++||||||||+|+++|++.+.|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|++
T Consensus 7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~ 86 (335)
T PLN02489 7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES 86 (335)
T ss_pred hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence 58899999998645699999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhc------cCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHH
Q 020275 86 RGLSIEEAESLLEKSVTLAVEARDKFWDAVK------KVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLK 159 (328)
Q Consensus 86 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~------~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~ 159 (328)
+|++.++++++|++||++||+|++++..+.. ++....+++++|+|||||+|+++.+|+||+|+|++.+++++++
T Consensus 87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~ 166 (335)
T PLN02489 87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLK 166 (335)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHH
Confidence 9998788999999999999999988743210 0001123579999999999999999999999999778999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
++|++|++.|+++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|++|+++++++..+++..++++||
T Consensus 167 ~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 246 (335)
T PLN02489 167 DFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVG 246 (335)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEE
Confidence 99999999999999999999999999999999999998765799999999999999999999999999887655789999
Q ss_pred ECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHH
Q 020275 240 INCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQA 319 (328)
Q Consensus 240 vNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~a 319 (328)
+||++|+.+.++++.++.....||++|||+|..|+...+.|......+|++|++++++|++.|++||||||||||+||++
T Consensus 247 iNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~a 326 (335)
T PLN02489 247 INCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRA 326 (335)
T ss_pred ecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHH
Confidence 99999999999999999988899999999999999888889755446788999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 020275 320 VSKVLKER 327 (328)
Q Consensus 320 l~~~l~~~ 327 (328)
|++.++.+
T Consensus 327 l~~~l~~~ 334 (335)
T PLN02489 327 ISKALSER 334 (335)
T ss_pred HHHHHhcC
Confidence 99998753
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.4e-80 Score=585.37 Aligned_cols=301 Identities=50% Similarity=0.887 Sum_probs=277.0
Q ss_pred HHHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCC
Q 020275 10 SLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLS 89 (328)
Q Consensus 10 ~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~ 89 (328)
.|+++|++ ++++|+||||||+|+++|++...|+||+.+++++||.|+++|++|++||||||+||||++|+.+|+++|++
T Consensus 3 ~~~~~l~~-~~~lilDGgmGT~L~~~g~~~~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~ 81 (304)
T PRK09485 3 PFKELLAQ-GPVLILDGALATELEARGCDLNDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS 81 (304)
T ss_pred hHHHHhcc-CCEEEEeChHHHHHHHcCCCCCCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC
Confidence 58889874 56999999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 020275 90 IEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVL 169 (328)
Q Consensus 90 ~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l 169 (328)
.+++++||++||+||++|++++. ..+++|+|||||+|.++.+++||+|+|. +++++++++|++|++.|
T Consensus 82 ~~~~~~l~~~av~lA~~a~~~~~----------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~~~q~~~l 149 (304)
T PRK09485 82 EAEAEELIRRSVELAKEARDEFW----------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFHRPRIEAL 149 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHHHHHHHHH
Confidence 77899999999999999998751 1258999999999999999999999995 79999999999999999
Q ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhH
Q 020275 170 VESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVE 249 (328)
Q Consensus 170 ~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~ 249 (328)
.++|||+|+|||||++.|++++++++++...++|||+||+++++++|++|+++++++..+.+...+++||+||++|+.+.
T Consensus 150 ~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~~~ 229 (304)
T PRK09485 150 AEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVT 229 (304)
T ss_pred hhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHHHH
Confidence 99999999999999999999999999965336999999999999999999999999999865446899999999999999
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 250 NLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 250 ~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
++|+.++...+.|+++|||+|..++...+.|... .++++|++++++|++.|++||||||||||+||++|++.++
T Consensus 230 ~~l~~~~~~~~~pl~~~PNaG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 230 AAIAALRAVTDKPLVVYPNSGEVYDAVTKTWHGP--ADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHhccCCcEEEECCCCCCCCCCCCcccCC--CChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHHHhh
Confidence 9999998888899999999999888777778643 2455899999999999999999999999999999999875
No 3
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-80 Score=569.47 Aligned_cols=302 Identities=45% Similarity=0.770 Sum_probs=278.5
Q ss_pred HHhhcCCeEEEecchHHHHHHCCCC-CCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHH
Q 020275 14 LIEKAGGCAVIDGGFATQLETHGAS-INDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEE 92 (328)
Q Consensus 14 ~l~~~~~~lvlDGg~gt~L~~~G~~-~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~ 92 (328)
++...++++|+||||||+|+++|++ .+.|+||+.+++++||+|+++|++||+||||||+|||||++...+..+ .+..+
T Consensus 12 ~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~-~~~~~ 90 (317)
T KOG1579|consen 12 ILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY-VEEEE 90 (317)
T ss_pred HHhccCcEEEEeChHHHHHHhhcccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh-hhhHH
Confidence 3334578999999999999999998 667999999999999999999999999999999999999999999998 55678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 020275 93 AESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVES 172 (328)
Q Consensus 93 ~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~ 172 (328)
.++++++.+++|+.|++.+..++ -||+||+||+|+++++|+||+|+|.++.+++++++||++|++.|.++
T Consensus 91 ~~el~~~s~~~a~~Are~~~~~~----------~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~ 160 (317)
T KOG1579|consen 91 LIELYEKSVELADLARERLGEET----------GYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEA 160 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc----------ceeeeecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999885442 29999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHH
Q 020275 173 GPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLI 252 (328)
Q Consensus 173 gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l 252 (328)
|||+|+|||+|+..|++++++++++...++|+||||+|.+.+++++|+++++++..+.+..++.+|||||++|..+..++
T Consensus 161 gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~ 240 (317)
T KOG1579|consen 161 GVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLL 240 (317)
T ss_pred CCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHH
Confidence 99999999999999999999999998558999999999999999999999999998876556999999999999999999
Q ss_pred HHHH-hhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhcC
Q 020275 253 CYFK-ELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKER 327 (328)
Q Consensus 253 ~~l~-~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~~ 327 (328)
..+. ..+..|+++|||+|++||...+.|.+. ....+.|..++++|.+.||+||||||||+|.||++|+++++..
T Consensus 241 ~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~-~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v~~~ 315 (317)
T KOG1579|consen 241 KELMAKLTKIPLLVYPNSGEVYDNEKGGWIPT-PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAVKKY 315 (317)
T ss_pred HHHhhccCCCeEEEecCCCCCCccccCcccCC-CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHhhcc
Confidence 8888 556779999999999999999999865 2345569999999999999999999999999999999999865
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-79 Score=555.42 Aligned_cols=296 Identities=43% Similarity=0.778 Sum_probs=273.7
Q ss_pred HHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHH
Q 020275 14 LIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEA 93 (328)
Q Consensus 14 ~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 93 (328)
.+. ...++||||||+|+|++||.++.+|+||+.+++++||+|+++|.+|++||||||+|+|||+++..+.+. .+.+++
T Consensus 4 ~l~-~~~vliLDGG~~tELe~rG~~l~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~~ 81 (300)
T COG2040 4 ELD-TLSVLILDGGLATELERRGCDLSDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDEA 81 (300)
T ss_pred ccc-cCCEEEecCchhHHHHhcCCCCCchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhHH
Confidence 344 357999999999999999999999999999999999999999999999999999999999999999888 777899
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 020275 94 ESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESG 173 (328)
Q Consensus 94 ~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~g 173 (328)
+++++.+|+|||+|++++.++ ...|+|||||||+++.+ ||+|+|+. +.+.++.||++|+++|.++|
T Consensus 82 ~~l~~~sv~la~~ard~~g~~----------~~~iagsiGP~ga~~a~--Ey~g~Y~~--~~d~~~~fh~~rie~l~~ag 147 (300)
T COG2040 82 KQLIRRSVELARAARDAYGEE----------NQNIAGSLGPYGAALAD--EYRGDYGA--SQDALYKFHRPRIEALNEAG 147 (300)
T ss_pred HHHHHHHHHHHHHHHHHhccc----------ccccceeccchhhhcCh--hhcCccCc--cHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998543 34589999999999998 99999965 88888999999999999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHH
Q 020275 174 PDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLIC 253 (328)
Q Consensus 174 vD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~ 253 (328)
+|+|.+||+|+++|+++++++.++. ++|+|||||++++.+|++|+++.+++..++..+++.++||||++|+++.++|+
T Consensus 148 ~Dlla~ETip~i~Ea~Aiv~l~~~~--s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~ 225 (300)
T COG2040 148 ADLLACETLPNITEAEAIVQLVQEF--SKPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIE 225 (300)
T ss_pred CcEEeecccCChHHHHHHHHHHHHh--CCceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHH
Confidence 9999999999999999999999998 59999999999999999999999999999877789999999999999999999
Q ss_pred HHH-hhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhcCC
Q 020275 254 YFK-ELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS 328 (328)
Q Consensus 254 ~l~-~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~~~ 328 (328)
.+. ....+|+++|||+|+.||+..+.|... ...++.|...+++|.+.|++||||||+|+|.||++|++++++.+
T Consensus 226 ~l~~~~~~~piivYPNSGe~~d~~~k~w~~p-~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~~~~~ 300 (300)
T COG2040 226 ELSKLLTGKPIIVYPNSGEQYDPAGKTWHGP-ALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKALKKAS 300 (300)
T ss_pred HHHhcCCCCceEEcCCcccccCcCCCcCCCC-CCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHHhccC
Confidence 994 445689999999999999988889742 24678899999999999999999999999999999999998754
No 5
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=6.5e-73 Score=538.11 Aligned_cols=290 Identities=23% Similarity=0.329 Sum_probs=252.1
Q ss_pred chHHHHHHHhhcCCeEEEecchHHHHHHCCCCCC--CccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHH
Q 020275 7 TASSLDDLIEKAGGCAVIDGGFATQLETHGASIN--DPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFL 84 (328)
Q Consensus 7 ~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~--~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~ 84 (328)
|...|+++|++ +.++||||||||+|+++|++.. .++|+ +++||+|+++|++|++||||||+|||||+|+.+|.
T Consensus 1 ~~~~~~~~l~~-~~ililDGgmGTeL~~~G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~ 75 (336)
T PRK07534 1 MTNALSDLLAE-RGVLLADGATGTNLFNMGLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLK 75 (336)
T ss_pred CChHHHHHHhc-CCEEEEECHHHHHHHHCCCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHH
Confidence 45679999974 5699999999999999999866 47998 89999999999999999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHH
Q 020275 85 SRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRR 164 (328)
Q Consensus 85 ~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~ 164 (328)
.++. .++++++|++||+|||+|++++ +++++|+|||||||+++.++ . .++.++++++|++
T Consensus 76 ~~~~-~~~~~~l~~~av~lAr~a~~~~-----------~~~~~VaGsIGP~g~~l~~~-------~-~~~~~e~~~~~~~ 135 (336)
T PRK07534 76 LHDA-QDRVHELNRAAAEIAREVADKA-----------GRKVIVAGSVGPTGEIMEPM-------G-ALTHALAVEAFHE 135 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHHHhc-----------CCccEEEEecCCCccccCCC-------C-CCCHHHHHHHHHH
Confidence 8884 4689999999999999999763 34689999999999987642 2 2588999999999
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc-CCceEEEECCC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS-GKVNAVGINCA 243 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGvNC~ 243 (328)
|++.|.++|||+|+|||||++.|++++++++++. ++|||+||++.++++|.+|+++++++..+.+. .++++||+||+
T Consensus 136 qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~ 213 (336)
T PRK07534 136 QAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCG 213 (336)
T ss_pred HHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCC
Confidence 9999999999999999999999999999999986 59999999999999999999999999988752 35699999999
Q ss_pred C-hhhhHHHHHH-HHhhcCCeEEEEeCCCC-ccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHH
Q 020275 244 P-PQFVENLICY-FKELTKKAIVVYPNSGE-VWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAV 320 (328)
Q Consensus 244 ~-p~~~~~~l~~-l~~~~~~pl~~ypN~g~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al 320 (328)
+ |+.+...+.. +...++.|+++|||+|. .|+... |... .+|+.|++++++|++.||+||||||||||+||++|
T Consensus 214 ~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~--~~~~--~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~~l 289 (336)
T PRK07534 214 VGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGH--IHYD--GTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAM 289 (336)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCc--cccC--CCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHHHH
Confidence 6 9988555544 45556789999999998 454322 2212 46889999999999999999999999999999999
Q ss_pred HHHHhcC
Q 020275 321 SKVLKER 327 (328)
Q Consensus 321 ~~~l~~~ 327 (328)
++.++++
T Consensus 290 a~~l~~~ 296 (336)
T PRK07534 290 RAALDAR 296 (336)
T ss_pred HHHHccC
Confidence 9998753
No 6
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=2.3e-76 Score=557.94 Aligned_cols=291 Identities=43% Similarity=0.782 Sum_probs=221.5
Q ss_pred eEEEecchHHHHHHCCCCCCCccchhh-------hcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHH
Q 020275 21 CAVIDGGFATQLETHGASINDPLWSAL-------YLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEA 93 (328)
Q Consensus 21 ~lvlDGg~gt~L~~~G~~~~~~lws~~-------~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 93 (328)
|+||||||||+|+++|.+..+++||+. +++++|++|+++|++|++||||||+|||||+|+.+|+++|++.+.+
T Consensus 1 ililDGgmGT~L~~~g~~~~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 80 (305)
T PF02574_consen 1 ILILDGGMGTELERRGLDLNDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEA 80 (305)
T ss_dssp -CTT--EEHHCCHHHHHHHCTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCH
T ss_pred CEEeehhhHHHHHhCCcCccccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHH
Confidence 579999999999999988878888744 6689999999999999999999999999999999999999987667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 020275 94 ESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESG 173 (328)
Q Consensus 94 ~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~g 173 (328)
+++|+++|++||+|+++|. .+++++|+|||||||+++. |++|.++|. .++++++++|++|++.|.++|
T Consensus 81 ~~l~~~av~lA~~a~~~~~---------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~~~l~~~g 148 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYG---------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQAEALADAG 148 (305)
T ss_dssp HHHHHHHHHHHHHHHTT------------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcc---------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999864 2356999999999999999 999999995 599999999999999999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc-----CCceEEEECCCChhhh
Q 020275 174 PDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS-----GKVNAVGINCAPPQFV 248 (328)
Q Consensus 174 vD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~iGvNC~~p~~~ 248 (328)
||+|+|||||++.|++++++++++.. ++|+||||++.+++++++|+++.+++..+++. .++++||+||++|..+
T Consensus 149 vD~l~~ET~~~~~E~~aa~~a~~~~~-~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~ 227 (305)
T PF02574_consen 149 VDLLLFETMPSLAEAKAALEAIKEVT-GLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEI 227 (305)
T ss_dssp -SEEEEEEEC-CSCHHHHHHHHHHHH-HCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHH
T ss_pred CCEEEEecCcHHHHHHHHHHHHHhhh-hhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHH
Confidence 99999999999999999999999932 59999999999999999999999888887664 5899999999998777
Q ss_pred HHHHHHHHhhc-CCeEEEEeCCCCccCCccccccCCC-CCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhc
Q 020275 249 ENLICYFKELT-KKAIVVYPNSGEVWDGRAKKWLPSK-CLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 249 ~~~l~~l~~~~-~~pl~~ypN~g~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
...|.++.... +.||++|||+|..++.. +.|.... .+.++ |.+++++|++.|++||||||||||+||++|++.|++
T Consensus 228 ~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~ 305 (305)
T PF02574_consen 228 MKALLELMSATHDIPLIVYPNSGEPYDVG-KVWSETPEDFAPE-WAEFVKEWVEAGARIIGGCCGTTPEHIRALAKALDK 305 (305)
T ss_dssp HHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGSTTTTTSHGGG--HHHHHHHHHHHHCEE---TT--HHHHHHHHHHTH-
T ss_pred HhHHHHHHhccCCceEEEecCCCCCcccc-cccccchhhhHHH-HHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHhcC
Confidence 77777666654 78999999999998877 6785432 22333 888999999999999999999999999999999874
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-70 Score=495.66 Aligned_cols=299 Identities=26% Similarity=0.423 Sum_probs=257.1
Q ss_pred cchHHHHHHHhhcCCeEEEecchHHHHHHCCCCCC---C-ccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChh
Q 020275 6 TTASSLDDLIEKAGGCAVIDGGFATQLETHGASIN---D-PLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIP 81 (328)
Q Consensus 6 ~~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~---~-~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~ 81 (328)
.....+.+.++ ++|||+||+|||+|++.|++-. + .--....++++||.|++||++|++||||||.||||.+|..
T Consensus 3 ~~~~~l~~~l~--~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i 80 (311)
T COG0646 3 AVNTQLREALK--ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTI 80 (311)
T ss_pred chhHHHHHHHH--cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchh
Confidence 34566888887 4899999999999999988644 1 1112344699999999999999999999999999999999
Q ss_pred hHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHH
Q 020275 82 GFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDF 161 (328)
Q Consensus 82 ~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~ 161 (328)
+|++|++. +++++||++|++|||+|++++. +.+++||+||+||++..++. +|++ .++++++++.
T Consensus 81 ~lady~le-d~v~~in~~aa~iAR~aA~~~~---------~~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~l~~a 144 (311)
T COG0646 81 KLADYGLE-DKVYEINQKAARIARRAADEAG---------DPKPRFVAGSIGPTNKTLSI----SPDF--AVTFDELVEA 144 (311)
T ss_pred hHhhhChH-HHHHHHHHHHHHHHHHHHhhcC---------CCCceEEEEeccCcCCcCCc----CCcc--cccHHHHHHH
Confidence 99999998 5899999999999999999863 11589999999999876543 2322 3799999999
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhc----CCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceE
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEE----NIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNA 237 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~----~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 237 (328)
|++|++.|.+.|||+|++||+.++.|+++++.++++. +..+|+|+|.++.+.|++++|.+++++...+++ .+++.
T Consensus 145 y~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~-~~~~~ 223 (311)
T COG0646 145 YREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH-LGPDA 223 (311)
T ss_pred HHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc-cCCcE
Confidence 9999999999999999999999999999999888863 456999999999999999999999999999987 47999
Q ss_pred EEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcC-CeEEeecCCCChH
Q 020275 238 VGINCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSG-AKLIGGCCRTTPS 315 (328)
Q Consensus 238 iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~iiGGCCGt~P~ 315 (328)
||+||. .|+.|.+.|+.+....+.++.+|||+|.+-... .... ...+|++|++.++.|++.| ++||||||||||+
T Consensus 224 vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g-~~~~--Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPe 300 (311)
T COG0646 224 VGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFG-ERAV--YDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPE 300 (311)
T ss_pred EeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccC-Cccc--cCCCHHHHHHHHHHHHHhCCceeeccccCCCHH
Confidence 999997 699999999999999999999999999531111 1111 1247999999999999888 9999999999999
Q ss_pred HHHHHHHHHhc
Q 020275 316 TIQAVSKVLKE 326 (328)
Q Consensus 316 hI~al~~~l~~ 326 (328)
||++|++++++
T Consensus 301 HIraia~~v~~ 311 (311)
T COG0646 301 HIRAIAEAVKG 311 (311)
T ss_pred HHHHHHHHhcC
Confidence 99999999863
No 8
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=6.2e-68 Score=564.19 Aligned_cols=304 Identities=24% Similarity=0.390 Sum_probs=266.8
Q ss_pred CcchHHHHHHHhhcCCeEEEecchHHHHHHCCCCCC---C---ccch-------hhhcCCChHHHHHHHHHHHHhcccee
Q 020275 5 NTTASSLDDLIEKAGGCAVIDGGFATQLETHGASIN---D---PLWS-------ALYLIKQPHLVKRVHLEYLEAGADIL 71 (328)
Q Consensus 5 ~~~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~---~---~lws-------~~~ll~~Pe~V~~iH~~yl~AGAdiI 71 (328)
+.|+..|++.|+ ++++||||||||+|+++|++.+ + ++|+ ..+++++||+|++||++|++||||||
T Consensus 5 ~~~~~~l~~~L~--~riLIlDGAMGT~Lq~~gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII 82 (1229)
T PRK09490 5 SSRLAQLRALLA--ERILVLDGAMGTMIQRYKLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADII 82 (1229)
T ss_pred hhHHHHHHHHHc--CCeEEEECcchHHHHHcCCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCcee
Confidence 456667999997 4899999999999999997532 1 5665 36679999999999999999999999
Q ss_pred ecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccC--cCCCCCCCCCC
Q 020275 72 VTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAY--LADGSEYSGNY 149 (328)
Q Consensus 72 ~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~--l~~~~eY~g~y 149 (328)
+||||++|+.+|.++|++ ++++++|++|++|||+|++++..++ ++++++|||||||+|.+ +++++||.| |
T Consensus 83 ~TNTF~a~~~~L~~ygl~-~~~~eln~~av~LAreAa~~~~~~~------~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~ 154 (1229)
T PRK09490 83 ETNTFNATTIAQADYGME-SLVYELNFAAARLAREAADEWTAKT------PDKPRFVAGVLGPTNRTASISPDVNDPG-F 154 (1229)
T ss_pred ecCCCCCCHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhcc------CCCceEEEEecCCCCcccccCCCccccc-c
Confidence 999999999999999997 5799999999999999999874331 24579999999999954 568899988 5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhc----CCCccEEEEEEecC-CCCCCCCCCHHH
Q 020275 150 GPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEE----NIQIPSWICFSSVD-GENAPSGESFKE 224 (328)
Q Consensus 150 ~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~----~~~~pv~is~~~~~-~~~l~~G~~~~~ 224 (328)
+. +++++++++|++|++.|+++|||+|++|||+++.|+++++.++++. +.++|+|+||++.+ +++|++|++++.
T Consensus 155 ~~-it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea 233 (1229)
T PRK09490 155 RN-VTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEA 233 (1229)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHH
Confidence 54 8999999999999999999999999999999999999999998864 44799999999965 799999999999
Q ss_pred HHHHHHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcC-
Q 020275 225 CLDIINKSGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSG- 302 (328)
Q Consensus 225 ~~~~~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 302 (328)
++..+.+ .++++||+||+ +|+.|.++|+.+.+.++.|+++|||+|.... ...| ..+|++|++++++|++.|
T Consensus 234 ~~~~l~~-~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~--~~~y----d~tPe~~a~~~~~~~~~G~ 306 (1229)
T PRK09490 234 FWNSLRH-AKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNA--FGEY----DETPEEMAAQIGEFAESGF 306 (1229)
T ss_pred HHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCC--CCCC----CCCHHHHHHHHHHHHHcCC
Confidence 9988865 68999999999 5999999999999998999999999996432 1123 247999999999999999
Q ss_pred CeEEeecCCCChHHHHHHHHHHhc
Q 020275 303 AKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 303 ~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
++||||||||||+||++|++.+++
T Consensus 307 v~IIGGCCGTtPeHI~ala~~l~~ 330 (1229)
T PRK09490 307 LNIVGGCCGTTPEHIAAIAEAVAG 330 (1229)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 9
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=1.9e-67 Score=537.30 Aligned_cols=282 Identities=27% Similarity=0.458 Sum_probs=252.9
Q ss_pred HHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCH
Q 020275 11 LDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSI 90 (328)
Q Consensus 11 ~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~ 90 (328)
|.+.|+ ++++||||||||+|+++|++.+.++ +.+++++||.|+++|++|++||||||+|||||+|+.+|+++|++
T Consensus 4 ~~~~l~--~~~lilDGgmGT~L~~~G~~~~~~~--~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~- 78 (612)
T PRK08645 4 LLERLK--ERVLIADGAMGTLLYSRGVPLDRCF--EELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLE- 78 (612)
T ss_pred HHHHhc--CCeEEEECHHHHHHHHcCCCCCCCh--HHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCch-
Confidence 677776 4799999999999999999876553 66789999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 020275 91 EEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLV 170 (328)
Q Consensus 91 ~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~ 170 (328)
++++++|++||+|||+|++ .+++|+|||||||++ ++|+. ++.++++++|++|++.|.
T Consensus 79 ~~~~~l~~~av~lAr~a~~--------------~~~~VagsiGP~g~~--------~~~~~-~~~~~~~~~~~~~~~~l~ 135 (612)
T PRK08645 79 DKVKEINRAAVRLAREAAG--------------DDVYVAGTIGPIGGR--------GPLGD-ISLEEIRREFREQIDALL 135 (612)
T ss_pred HHHHHHHHHHHHHHHHHhc--------------CCCeEEEeCCCCCCC--------CCCCC-CCHHHHHHHHHHHHHHHH
Confidence 6799999999999999974 358999999999984 45654 689999999999999999
Q ss_pred hcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC-hhhhH
Q 020275 171 ESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP-PQFVE 249 (328)
Q Consensus 171 ~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~-p~~~~ 249 (328)
++|||+|++||||++.|++++++++++.+ ++|+|+||+++++++|++|+++++++..+.+ .++++||+||++ |+.+.
T Consensus 136 ~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~-~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~-~~~~avGiNC~~~p~~~~ 213 (612)
T PRK08645 136 EEGVDGLLLETFYDLEELLLALEAAREKT-DLPIIAQVAFHEDGVTQNGTSLEEALKELVA-AGADVVGLNCGLGPYHML 213 (612)
T ss_pred hcCCCEEEEEccCCHHHHHHHHHHHHHhC-CCcEEEEEEECCCCeeCCCCCHHHHHHHHHh-CCCCEEEecCCCCHHHHH
Confidence 99999999999999999999999999875 5999999999999999999999999999876 469999999996 99999
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCc-cCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhc
Q 020275 250 NLICYFKELTKKAIVVYPNSGEV-WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 250 ~~l~~l~~~~~~pl~~ypN~g~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
++|+.+...++.|+++|||+|.. ++.....| . .+|+.|++++++|++.||+||||||||||+||++|++.++.
T Consensus 214 ~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~-~---~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~ 287 (612)
T PRK08645 214 EALERIPIPENAPLSAYPNAGLPEYVDGRYVY-S---ANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKG 287 (612)
T ss_pred HHHHHHHhccCceEEEEECCCCCCCCCCcccc-C---CCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhcc
Confidence 99999987678899999999974 33322222 2 36889999999999999999999999999999999999874
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=1.2e-65 Score=548.17 Aligned_cols=292 Identities=24% Similarity=0.357 Sum_probs=258.2
Q ss_pred CCeEEEecchHHHHHHCCCCCCCccch------------hhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhC
Q 020275 19 GGCAVIDGGFATQLETHGASINDPLWS------------ALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSR 86 (328)
Q Consensus 19 ~~~lvlDGg~gt~L~~~G~~~~~~lws------------~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~ 86 (328)
++++||||||||+|+++|++.++++|+ ...++++||+|++||++|++||||||+||||++|+.+|.++
T Consensus 3 ~rilvlDGamGT~Lq~~gl~~~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~y 82 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQADY 82 (1178)
T ss_pred CceEEEEChhHHHHHhCCCCccccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHhhC
Confidence 479999999999999999998888996 66789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCc--CCCCCCCCCCCCCCCHHHHHHHHHH
Q 020275 87 GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYL--ADGSEYSGNYGPGVDLEKLKDFHRR 164 (328)
Q Consensus 87 g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l--~~~~eY~g~y~~~~~~~e~~~~h~~ 164 (328)
|++ ++++++|++|+++||+|++++... ++++++|||||||+|.++ .++.+|.| |++ +++++++++|++
T Consensus 83 g~~-~~~~eln~~av~lAr~Aa~~~~~~-------~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~~-~t~del~~~y~e 152 (1178)
T TIGR02082 83 DLE-DLIYDLNFKGAKLARAVADEFTLT-------PEKPRFVAGSMGPTNKTATLSPDVERPG-FRN-VTYDELVDAYTE 152 (1178)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhhccc-------CCCceEEEEEeCCCCCCccCCCccccCc-cCC-CCHHHHHHHHHH
Confidence 997 579999999999999999886321 235799999999999754 44555554 764 899999999999
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhc----CCCccEEEEEE-ecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEE----NIQIPSWICFS-SVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~----~~~~pv~is~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
|++.|+++|||+|++|||+++.|+++++.++++. +.++|||||++ +++++++++|+++++++..+.. .++++||
T Consensus 153 q~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~-~~~~avG 231 (1178)
T TIGR02082 153 QAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH-AGIDMIG 231 (1178)
T ss_pred HHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc-CCCCEEE
Confidence 9999999999999999999999999999999873 34799999955 5677999999999999988865 6899999
Q ss_pred ECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHc-CCeEEeecCCCChHHH
Q 020275 240 INCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDS-GAKLIGGCCRTTPSTI 317 (328)
Q Consensus 240 vNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI 317 (328)
+||+ +|+.|.++++.+...++.|+++|||+|..+.. ..|. .+|++|++++++|++. |++||||||||||+||
T Consensus 232 lNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~~yd----~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI 305 (1178)
T TIGR02082 232 LNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAF--GEYD----LTPDELAKALADFAAEGGLNIVGGCCGTTPDHI 305 (1178)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCC--Cccc----CCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHH
Confidence 9999 59999999999999999999999999975432 2232 4689999999999987 6999999999999999
Q ss_pred HHHHHHHhcC
Q 020275 318 QAVSKVLKER 327 (328)
Q Consensus 318 ~al~~~l~~~ 327 (328)
++|++++++.
T Consensus 306 ~ala~~l~~~ 315 (1178)
T TIGR02082 306 RAIAEAVKNI 315 (1178)
T ss_pred HHHHHHhhcC
Confidence 9999998753
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=96.91 E-value=0.087 Score=49.29 Aligned_cols=159 Identities=15% Similarity=0.238 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHH--------------HHHHHHH----hcCCCccEEEEEEecCCC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQ--------------ALVELLE----EENIQIPSWICFSSVDGE 214 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~--------------a~~~~~~----~~~~~~pv~is~~~~~~~ 214 (328)
..++.+.+.|+. .+++|+|+|-=.||....-.. .+++.+| +.+.++|.+|.-++-.-.
T Consensus 50 T~Pd~I~~IH~a----Y~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~ 125 (311)
T COG0646 50 TKPDVIEAIHRA----YIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTN 125 (311)
T ss_pred CCcHHHHHHHHH----HHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcC
Confidence 355777777774 456999999888887532211 2233333 333126888888775555
Q ss_pred C--CCCC---CCHHHHHHHHHh------cCCceEEEECCC-ChhhhHHHHHHHHhhcC-----CeEEEEeCCCCccCCcc
Q 020275 215 N--APSG---ESFKECLDIINK------SGKVNAVGINCA-PPQFVENLICYFKELTK-----KAIVVYPNSGEVWDGRA 277 (328)
Q Consensus 215 ~--l~~G---~~~~~~~~~~~~------~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~-----~pl~~ypN~g~~~d~~~ 277 (328)
+ ..+| .++++.++...+ ..+++++.|.-. ....++.++..+++... .|+++.--.- +
T Consensus 126 k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~---~--- 199 (311)
T COG0646 126 KTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTIT---D--- 199 (311)
T ss_pred CcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEe---c---
Confidence 4 2244 567766554322 258999999986 57888888888877765 6887733211 1
Q ss_pred ccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 278 KKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
.++.++-....++...+...|+.++|==|+++|+|++..-+.+.
T Consensus 200 ----sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls 243 (311)
T COG0646 200 ----SGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELS 243 (311)
T ss_pred ----CceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHH
Confidence 11112222345555567788999999999999988877655553
No 12
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.16 E-value=0.75 Score=39.67 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHh-cCC-CccEEEEEEecCCCCCCCCCCHHHHHHHHHh--cCCceE
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEE-ENI-QIPSWICFSSVDGENAPSGESFKECLDIINK--SGKVNA 237 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~-~~~-~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~~ 237 (328)
.++.++.+.+.|+|.|.+-- .+++.+++ .+. +.|+++.+...... ....+.++.++. ..++++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHHcCCCE
Confidence 46678888889999986553 23333332 232 47888777532211 223444443322 247788
Q ss_pred EEECCCC-------hhhhHHHHHHHHhh--cCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEee
Q 020275 238 VGINCAP-------PQFVENLICYFKEL--TKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGG 308 (328)
Q Consensus 238 iGvNC~~-------p~~~~~~l~~l~~~--~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGG 308 (328)
+.+-+.. ++.+...++.+.+. .+.|+++|.+-+.. .+++...+.++...+.|+..|==
T Consensus 82 i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-------------~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 82 IDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-------------KTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred EEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-------------CCHHHHHHHHHHHHHhCCCEEEe
Confidence 8776642 23445556666666 37899999874421 23555666655556667766644
Q ss_pred cCC-----CChHHHHHHHHHH
Q 020275 309 CCR-----TTPSTIQAVSKVL 324 (328)
Q Consensus 309 CCG-----t~P~hI~al~~~l 324 (328)
..| .+.++++++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 149 STGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred CCCCCCCCCCHHHHHHHHHhc
Confidence 444 3667777776654
No 13
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.44 E-value=1.6 Score=41.08 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-CCeEEEe------cCCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESG-PDLLAFE------TIPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKE 224 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~g-vD~i~~E------T~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~ 224 (328)
++.+.+ +.+++.+.+.| ||.|++- ..-+.+|-+.+++.+.+. +.++|+++.+. +.+..+
T Consensus 18 iD~~~~----~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (290)
T TIGR00683 18 INEKGL----RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKE 84 (290)
T ss_pred cCHHHH----HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHH
Confidence 565554 77888888899 9998553 344678888888766653 33589998873 345677
Q ss_pred HHHHHHh--cCCceEEEECC-----CChhhhHHHHHHHHhhc-CCeEEEEeCC
Q 020275 225 CLDIINK--SGKVNAVGINC-----APPQFVENLICYFKELT-KKAIVVYPNS 269 (328)
Q Consensus 225 ~~~~~~~--~~~~~~iGvNC-----~~p~~~~~~l~~l~~~~-~~pl~~ypN~ 269 (328)
+++.++. ..+++++.+-= .+.+.+....+.+...+ +.|+++|-|-
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 7765532 24777777621 12345666666665555 6899999774
No 14
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.29 E-value=0.77 Score=42.80 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=56.2
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCCh------------hhhHHHHHHHHhhcCCeEEEEeC
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPP------------QFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p------------~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+.|+++|+... +-+.+.++++.+.+ .++++|-+||..| +.+..+++.+++..+.|+++.-+
T Consensus 98 ~~pvi~si~g~------~~~~~~~~a~~~~~-~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 98 GQPLIASVGGS------SKEDYVELARKIER-AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS 170 (289)
T ss_pred CCeEEEEeccC------CHHHHHHHHHHHHH-hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC
Confidence 58999998532 11233445555544 4788999998754 34566778888777789888765
Q ss_pred CCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 269 SGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 269 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
.+ .+.+++.+.++.+.+.|+..|
T Consensus 171 ~~---------------~~~~~~~~~a~~l~~~Gad~i 193 (289)
T cd02810 171 PY---------------FDLEDIVELAKAAERAGADGL 193 (289)
T ss_pred CC---------------CCHHHHHHHHHHHHHcCCCEE
Confidence 32 235678888888888887544
No 15
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=95.29 E-value=1.1 Score=50.06 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH-------------HHHH-HHHHHHHhc----C--CCccEEEEEEecC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK-------------LEAQ-ALVELLEEE----N--IQIPSWICFSSVD 212 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~-------------~E~~-a~~~~~~~~----~--~~~pv~is~~~~~ 212 (328)
...+-+++.|+.- +++|+|+|.--|+..- .|+- .+++++|+. . .+.|++|.-++-.
T Consensus 47 t~Pe~I~~IH~~Y----l~AGAdII~TNTF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP 122 (1178)
T TIGR02082 47 TKPEVIATIHRAY----FEAGADIIETNTFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGP 122 (1178)
T ss_pred CCHHHHHHHHHHH----HHHhchheecCCccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCC
Confidence 3567788888754 4589999977777331 1111 334444432 1 1357888888876
Q ss_pred CCCCC-CC----------CCHHHHHHHHHh------cCCceEEEECCC-ChhhhHHHHHHHHhh-----cCCeEEEEeCC
Q 020275 213 GENAP-SG----------ESFKECLDIINK------SGKVNAVGINCA-PPQFVENLICYFKEL-----TKKAIVVYPNS 269 (328)
Q Consensus 213 ~~~l~-~G----------~~~~~~~~~~~~------~~~~~~iGvNC~-~p~~~~~~l~~l~~~-----~~~pl~~ypN~ 269 (328)
-+.+. .| .+++++.+.... ..+++.|.+.-. ....+..++..+++. .+.|+++.-..
T Consensus 123 ~g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~ 202 (1178)
T TIGR02082 123 TNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTI 202 (1178)
T ss_pred CCCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE
Confidence 66532 22 467766543211 258999999865 567777777777654 35788775111
Q ss_pred CCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhc
Q 020275 270 GEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 270 g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
.+.... -.. +.+.+.+...+ ...|+..||=-|+++|+++..+-+.+..
T Consensus 203 ---~d~~Gr-~~~--G~~~~~~~~~l---~~~~~~avGlNCs~gP~~m~~~l~~l~~ 250 (1178)
T TIGR02082 203 ---VDTSGR-TLS--GQTIEAFLTSL---EHAGIDMIGLNCALGPDEMRPHLKHLSE 250 (1178)
T ss_pred ---ECCCCe-eCC--CCcHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHHHHHH
Confidence 011000 111 13444554443 4679999999999999999988777753
No 16
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.16 E-value=1.1 Score=41.61 Aligned_cols=155 Identities=14% Similarity=0.280 Sum_probs=87.0
Q ss_pred HHHhccceeecCCcCCChhhHHhCCCCHH---HHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCc
Q 020275 63 YLEAGADILVTSSYQATIPGFLSRGLSIE---EAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYL 139 (328)
Q Consensus 63 yl~AGAdiI~TnTy~as~~~l~~~g~~~~---~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l 139 (328)
.-+||.|+|.|-..-. ....|++.. ..++++..+ +.++.. -.+.+|...+ |++.
T Consensus 31 ~~~aG~d~ilvGdSlg----m~~lG~~~t~~vtldem~~h~----~aV~rg------------~~~~~vv~Dm-Pf~s-- 87 (263)
T TIGR00222 31 FADAGVDVILVGDSLG----MVVLGHDSTLPVTVADMIYHT----AAVKRG------------APNCLIVTDL-PFMS-- 87 (263)
T ss_pred HHHcCCCEEEECccHh----HHhcCCCCCCCcCHHHHHHHH----HHHHhh------------CCCceEEeCC-CcCC--
Confidence 4478999888764433 233454210 133443333 333321 1357888888 4442
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEE-------EEEEecC
Q 020275 140 ADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSW-------ICFSSVD 212 (328)
Q Consensus 140 ~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~-------is~~~~~ 212 (328)
|. +.+ +.++.-.+.+.++|+|.+=+|-- .|....++++.+.+ .||+ .+.....
T Consensus 88 ---------y~---~~e---~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~g--IpV~gHiGltPq~a~~~g 147 (263)
T TIGR00222 88 ---------YA---TPE---QALKNAARVMQETGANAVKLEGG---EWLVETVQMLTERG--VPVVGHLGLTPQSVNILG 147 (263)
T ss_pred ---------CC---CHH---HHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCC--CCEEEecCCCceeEeecC
Confidence 32 233 33444445555699999999974 44445557776664 9999 6555432
Q ss_pred CCCCCCCCCHHHHHHHHH-----hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 213 GENAPSGESFKECLDIIN-----KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 213 ~~~l~~G~~~~~~~~~~~-----~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
+-+. -|.+-+++-+.++ +..+++++=+-|..+ .+.+.+.+..+.|++-
T Consensus 148 gy~~-qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~----~~a~~It~~l~iP~iG 200 (263)
T TIGR00222 148 GYKV-QGKDEEAAKKLLEDALALEEAGAQLLVLECVPV----ELAAKITEALAIPVIG 200 (263)
T ss_pred Ceee-cCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcH----HHHHHHHHhCCCCEEe
Confidence 2233 3666444333332 125899999999974 4455555555677643
No 17
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=95.12 E-value=6.7 Score=44.07 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=119.1
Q ss_pred HHHHHHHHH----HHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 54 HLVKRVHLE----YLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 54 e~V~~iH~~----yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
|.+++.|++ ++++|+|+|.-=|+... .+++ +++..++++.++. ..+.+++|.
T Consensus 160 del~~~y~eQi~~L~e~GVDllliETi~d~-----------~Eak----Aal~a~~~~~~~~---------~~~lPv~vS 215 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIETIFDT-----------LNAK----AAIFAVEEVFEEL---------GVRLPVMIS 215 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeeCCH-----------HHHH----HHHHHHHHHHhhc---------CCCCeEEEE
Confidence 556666654 45788999998887733 2232 3444444443321 124589999
Q ss_pred eecCC-cccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 130 ASIGS-YGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 130 GsiGP-~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
.++-. .|..+. | .+.+. .+..+...++|.|.+-.-..+.++..+++-+.+.. +.| |++
T Consensus 216 ~T~~d~~Gr~ls------G-----~~~ea-------~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~-~~p--i~v 274 (1229)
T PRK09490 216 GTITDASGRTLS------G-----QTTEA-------FWNSLRHAKPLSIGLNCALGADELRPYVEELSRIA-DTY--VSA 274 (1229)
T ss_pred EEEECCCCccCC------C-----CcHHH-------HHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhc-CCe--EEE
Confidence 99843 453321 2 13322 23334467999999998877899999998887653 344 444
Q ss_pred EecCCC-C--CCCCCCHHHHHHHH---HhcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeE---------------EEE
Q 020275 209 SSVDGE-N--APSGESFKECLDII---NKSGKVNAVGINCA-PPQFVENLICYFKELTKKAI---------------VVY 266 (328)
Q Consensus 209 ~~~~~~-~--l~~G~~~~~~~~~~---~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl---------------~~y 266 (328)
..+... . -..-.+.++..+.+ .+...+..||==|. .|+++..+-+.+....+++. .+-
T Consensus 275 yPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~ 354 (1229)
T PRK09490 275 HPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNID 354 (1229)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeec
Confidence 443321 0 01112444444433 33323778898884 69999888887765433221 011
Q ss_pred eC-----CCCccCCc-cccccCC-CCCChhHHHHHHHHHHHcCCeEEeecCCCCh
Q 020275 267 PN-----SGEVWDGR-AKKWLPS-KCLGDGKFESFATRWRDSGAKLIGGCCRTTP 314 (328)
Q Consensus 267 pN-----~g~~~d~~-~~~~~~~-~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P 314 (328)
++ -|+..... .+.+... ..-+.+...+.+++.++.||.||==|.|..+
T Consensus 355 ~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~g~~~ 409 (1229)
T PRK09490 355 DDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINMDEGM 409 (1229)
T ss_pred CCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 10 01100000 0000000 0013455677788889999999888888643
No 18
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.10 E-value=0.7 Score=43.44 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHhcCCCeEEEecCCCHH-------------------------HHHHHHHHHHhc--CCCccEEEEEEecCCCCCC
Q 020275 165 RLQVLVESGPDLLAFETIPNKL-------------------------EAQALVELLEEE--NIQIPSWICFSSVDGENAP 217 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~-------------------------E~~a~~~~~~~~--~~~~pv~is~~~~~~~~l~ 217 (328)
.++.+.+.|++++..+|+.... .....++-+++. ..+.|+++|+.
T Consensus 27 ~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~-------- 98 (300)
T TIGR01037 27 SLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVY-------- 98 (300)
T ss_pred HHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEee--------
Confidence 4445667799999886554320 122223333221 12469999994
Q ss_pred CCCCHH---HHHHHHHhc-CCceEEEECCCCh-------------hhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccc
Q 020275 218 SGESFK---ECLDIINKS-GKVNAVGINCAPP-------------QFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKW 280 (328)
Q Consensus 218 ~G~~~~---~~~~~~~~~-~~~~~iGvNC~~p-------------~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~ 280 (328)
|.+.+ ++++.+.+. ..+++|=+||..| +.+..+++.+++..+.|+++.-+.
T Consensus 99 -g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~----------- 166 (300)
T TIGR01037 99 -GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP----------- 166 (300)
T ss_pred -cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC-----------
Confidence 44444 445555432 2378999999754 446667778877777788876531
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 281 LPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
+.++..++++.+.+.|+..|
T Consensus 167 ------~~~~~~~~a~~l~~~G~d~i 186 (300)
T TIGR01037 167 ------NVTDITEIAKAAEEAGADGL 186 (300)
T ss_pred ------ChhhHHHHHHHHHHcCCCEE
Confidence 12356677777778887544
No 19
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.60 E-value=3.9 Score=38.65 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEE-ec-----CCCHHHHHHHHHHHHh-cCCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAF-ET-----IPNKLEAQALVELLEE-ENIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++++.+ +.+++.+.+.|||.|++ -| .-+.+|=+.+++.+.+ ...++|+++.+. + +..++
T Consensus 25 iD~~~l----~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~~ 90 (303)
T PRK03620 25 FDEAAY----REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQA 90 (303)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHHH
Confidence 566654 77888899999999865 33 2355676777776554 333689998772 2 45667
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
++.++. ..+++++.+--- +++.+....+.+.+.++.|+++|=+.|
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g 142 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 665532 247777766432 124466666777777889999996544
No 20
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.46 E-value=4.1 Score=37.74 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+.+ +.+++.+.+.|||.|++- | .-+.+|-+.+++.+.+. +.+.|+++.+. +.+..++
T Consensus 15 iD~~~~----~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 81 (281)
T cd00408 15 VDLDAL----RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREA 81 (281)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHH
Confidence 565554 778888888999998743 2 23467878888777664 33689998873 4455667
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
++.++. ..+++++.+--- +++.+....+.+.+.++.|+++|=+-
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIP 132 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 665432 257888887653 23556666677777778999999653
No 21
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.40 E-value=2 Score=39.30 Aligned_cols=73 Identities=21% Similarity=0.117 Sum_probs=46.6
Q ss_pred eEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 020275 126 ALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 126 ~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
++|.+=+|-+...+....-|.+.+ .+.+++. ..-++.+++.++|+|.|++|.+ +.++++.+.+.+ +.|+.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~---~~~~~~~-~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~-----~~P~~ 195 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQY---RGDEAGE-QLIADALAYAPAGADLIVMECV-PVELAKQITEAL-----AIPLA 195 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeec---cCHHHHH-HHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhC-----CCCEE
Confidence 677777776554332211233322 1344443 3566899999999999999977 888877776642 58876
Q ss_pred EEE
Q 020275 206 ICF 208 (328)
Q Consensus 206 is~ 208 (328)
.-.
T Consensus 196 ~~g 198 (240)
T cd06556 196 GIG 198 (240)
T ss_pred EEe
Confidence 543
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.27 E-value=1.6 Score=41.68 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=54.0
Q ss_pred hcCCCeEEEecCCCHHHHHH---HHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---HHHHHHHhcCCceEEEECCCC
Q 020275 171 ESGPDLLAFETIPNKLEAQA---LVELLEEENIQIPSWICFSSVDGENAPSGESFK---ECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 171 ~~gvD~i~~ET~~~~~E~~a---~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~~iGvNC~~ 244 (328)
+.|+|+.+-|.++.-..... ............|+.+++ -|.+++ +++..+.+ .++++|-+||..
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~-~g~d~IdlN~gC 100 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVE-SGAQIIDINMGC 100 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence 45889988898776432110 111111112136776666 344444 44554443 578999999974
Q ss_pred h-----------------hhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 245 P-----------------QFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 245 p-----------------~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
| +.+..+++.+++..+.|+.++-+.|
T Consensus 101 P~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 101 PAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred CHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 4 4466667777777778998877765
No 23
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.20 E-value=0.94 Score=40.54 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHH----HHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceE
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQAL----VELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNA 237 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~----~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 237 (328)
||...+. .|+|+++=|.+..- .+..- .........+.|+++++... +-+.+.+++..+.+ .+.++
T Consensus 15 fR~l~~~---~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~-aG~d~ 83 (231)
T cd02801 15 FRLLCRR---YGADLVYTEMISAK-ALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE-LGADG 83 (231)
T ss_pred HHHHHHH---HCCCEEEecCEEEh-hhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh-cCCCE
Confidence 4444443 35999887755432 11111 12222233468999999521 22344556665554 47899
Q ss_pred EEECCCCh-----------------hhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 238 VGINCAPP-----------------QFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 238 iGvNC~~p-----------------~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
|-|||.+| ..+...++.+++....|+.+.-|.|
T Consensus 84 ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 84 IDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred EEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 99998654 3456777777776667888877654
No 24
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.90 E-value=2.8 Score=40.13 Aligned_cols=116 Identities=16% Similarity=0.301 Sum_probs=65.5
Q ss_pred CceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 020275 124 NRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 124 ~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.+.+|.+.+ |+|. |. .+.++.. +.-.+.+.+.|+|.+=+|--. .+...+++.+.+. +.|
T Consensus 95 ~~a~vVaDm-PfgS-----------Y~--~s~e~av---~nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~--GIP 153 (332)
T PLN02424 95 NRPLLVGDL-PFGS-----------YE--SSTDQAV---ESAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEA--GIA 153 (332)
T ss_pred CCCEEEeCC-CCCC-----------CC--CCHHHHH---HHHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHc--CCC
Confidence 356788877 4443 32 2555443 333344457899999999653 3334455555555 499
Q ss_pred EE--EEEEecCCCCC----CCCCCHHHHHHHHH-----hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEE
Q 020275 204 SW--ICFSSVDGENA----PSGESFKECLDIIN-----KSGKVNAVGINCAPPQFVENLICYFKELTKKAIV 264 (328)
Q Consensus 204 v~--is~~~~~~~~l----~~G~~~~~~~~~~~-----~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~ 264 (328)
|+ |-++......+ .-|.+-+++.+.++ +..++++|=+-|+... +.+.+.+..+.|.+
T Consensus 154 V~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~----la~~It~~l~IPtI 221 (332)
T PLN02424 154 VMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP----VAAAITSALQIPTI 221 (332)
T ss_pred EEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 99 33333322222 14555444333332 1258899999999743 55555555566654
No 25
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.60 E-value=2.7 Score=40.56 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc-CCceEEEECCCCh-----------hhhHHHHHHHH
Q 020275 189 QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS-GKVNAVGINCAPP-----------QFVENLICYFK 256 (328)
Q Consensus 189 ~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGvNC~~p-----------~~~~~~l~~l~ 256 (328)
...++-+++...+.|+++|+..... ...+.+.++.+..+... ..++++-+|++.| +.+..+++.++
T Consensus 125 ~~~~~~l~~~~~~~pvivsI~~~~~--~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 125 DALAERLKKAYRGIPLGINIGKNKD--TPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHhcCCCcEEEEEecCCC--CCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 3334444443236899999965322 22233455555444321 2478999998654 34667778887
Q ss_pred hhcC-----CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCC
Q 020275 257 ELTK-----KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGA 303 (328)
Q Consensus 257 ~~~~-----~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 303 (328)
+..+ .|+.++-... .+.+++.+.++.+.+.|+
T Consensus 203 ~~~~~~~~~~PV~vKlsp~---------------~~~~~~~~ia~~l~~~Ga 239 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPD---------------LSDEELDDIADLALEHGI 239 (344)
T ss_pred HHHhccccCCceEEEeCCC---------------CCHHHHHHHHHHHHHhCC
Confidence 7765 7887765421 234567788888888876
No 26
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.60 E-value=3.3 Score=37.93 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCCeEEEecCC--------------CHHHHHHHHHHHHhcCCC-ccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFETIP--------------NKLEAQALVELLEEENIQ-IPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~--------------~~~E~~a~~~~~~~~~~~-~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
.+.++.+.+.|++.+.+|-.. +.+|...-++++++...+ .+++|-.-+ |.......+++++++
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~~~~~~~~~eai~ 164 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DALLAGEEGLDEAIE 164 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--CchhccCCCHHHHHH
Confidence 445788888999999997533 677877778777765322 355555543 222221256888887
Q ss_pred HHHh--cCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 228 IINK--SGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 228 ~~~~--~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
..+. ..+++++-+-+. .++.+ +.+.+..+.|+++|+..+
T Consensus 165 Ra~ay~~AGAD~v~v~~~~~~~~~----~~~~~~~~~Pl~~~~~~~ 206 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLKDPEEI----RAFAEAPDVPLNVNMTPG 206 (243)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHH----HHHHhcCCCCEEEEecCC
Confidence 6643 246788777664 34444 444444678999987643
No 27
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.59 E-value=0.91 Score=43.18 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=56.3
Q ss_pred hcCCCeEEEecCCCHHHHH---HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh-
Q 020275 171 ESGPDLLAFETIPNKLEAQ---ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ- 246 (328)
Q Consensus 171 ~~gvD~i~~ET~~~~~E~~---a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~- 246 (328)
+.|+|+++-|.+....=.. .....+.....+.|+++++... +-+.+.+++..+.+ .+.++|-+||..|.
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~-~G~d~IelN~gcP~~ 101 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE-LGADIIDINMGCPVP 101 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh-CCCCEEEEECCCCHH
Confidence 4578999999886642111 1122222233368999998521 22334455555544 57899999998663
Q ss_pred ----------------hhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 247 ----------------FVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 247 ----------------~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
.+..+++.++..++.|+.++-..|
T Consensus 102 ~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 102 KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 233455666666778998886544
No 28
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=93.52 E-value=6.9 Score=37.02 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCC-----------HHHHHHH----HHHHHhcCC---CccEEEEEEecCCCC
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPN-----------KLEAQAL----VELLEEENI---QIPSWICFSSVDGEN 215 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~-----------~~E~~a~----~~~~~~~~~---~~pv~is~~~~~~~~ 215 (328)
+++-+++.|+.-+ ++|+|+|.--|+.. .++++.+ ++.+++... ..|++|.-++-.-+.
T Consensus 44 ~Pe~V~~vH~~yl----~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~ 119 (304)
T PRK09485 44 NPELIYQVHLDYF----RAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGA 119 (304)
T ss_pred ChHHHHHHHHHHH----HhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCccc
Confidence 4566688888765 56999988888742 2333222 344443210 126777777655443
Q ss_pred CC-C--------CCCHHHHHHH-------HHhcCCceEEEECCC-ChhhhHHHHHHHHhhc-CCeEEEEeCCCCccCCcc
Q 020275 216 AP-S--------GESFKECLDI-------INKSGKVNAVGINCA-PPQFVENLICYFKELT-KKAIVVYPNSGEVWDGRA 277 (328)
Q Consensus 216 l~-~--------G~~~~~~~~~-------~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~-~~pl~~ypN~g~~~d~~~ 277 (328)
.. + +.+.+++.+. +. ..+++.|.+.-. +...+..+++.+++.. ..|+++.-..- +.
T Consensus 120 ~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~-~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~---~~-- 193 (304)
T PRK09485 120 YLADGSEYRGDYGLSEEELQDFHRPRIEALA-EAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLR---DG-- 193 (304)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHh-hCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeC---CC--
Confidence 22 1 2466665543 22 257999999976 5788888888887443 56765533210 00
Q ss_pred ccccCCCCCChhHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHHHh
Q 020275 278 KKWLPSKCLGDGKFESFATRWRDS-GAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
. .+. .+.+.++..+.+ .+. ++..||==|. .|+|+..+-+.+.
T Consensus 194 g-~l~-~G~~~~~~~~~l---~~~~~~~~iGiNC~-~p~~~~~~l~~~~ 236 (304)
T PRK09485 194 T-HIS-DGTPLAEAAALL---AASPQVVAVGVNCT-APELVTAAIAALR 236 (304)
T ss_pred C-cCC-CCCCHHHHHHHH---hcCCCceEEEecCC-CHHHHHHHHHHHH
Confidence 0 111 112344444443 344 4788999996 9999998877764
No 29
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.41 E-value=1.8 Score=40.04 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
+.-.++++.+.++|+|.|++|-+|+ ++++.+.+.+ ++|++ .+
T Consensus 158 ~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v-----~iP~i-gi 199 (254)
T cd06557 158 ERLLEDALALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI-GI 199 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE-Ee
Confidence 4445688999999999999999986 5666666543 47766 54
No 30
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.38 E-value=2.3 Score=38.95 Aligned_cols=120 Identities=22% Similarity=0.217 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHhccceeec--CCcCCChhhHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEE
Q 020275 52 QPHLVKRVHLEYLEAGADILVT--SSYQATIPGFLSR-GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALV 128 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~T--nTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~V 128 (328)
+++.+.+..+.++++|++-|.. -++.-.-..+... -++.++..+.++++ +++++.. .+-+++
T Consensus 82 ~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa----~~a~~~~-----------~~~~Ii 146 (243)
T cd00377 82 NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA----RDARDDL-----------PDFVII 146 (243)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH----HHHHhcc-----------CCeEEE
Confidence 5677888999999999986655 2221110011111 13444444444433 3333210 022344
Q ss_pred EeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 129 AASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 129 aGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
|++ -.+.. +.+ +.+|. -+|.+...++|+|.++++...+.++++.+.+. .+.|+.+-.
T Consensus 147 ART-Da~~~---------~~~----~~~ea----i~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~-----~~~Pl~~~~ 203 (243)
T cd00377 147 ART-DALLA---------GEE----GLDEA----IERAKAYAEAGADGIFVEGLKDPEEIRAFAEA-----PDVPLNVNM 203 (243)
T ss_pred EEc-Cchhc---------cCC----CHHHH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEe
Confidence 442 11110 001 23332 66889999999999999999999888877765 258888775
Q ss_pred E
Q 020275 209 S 209 (328)
Q Consensus 209 ~ 209 (328)
+
T Consensus 204 ~ 204 (243)
T cd00377 204 T 204 (243)
T ss_pred c
Confidence 4
No 31
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.30 E-value=5.3 Score=37.22 Aligned_cols=101 Identities=8% Similarity=0.036 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 163 RRRLQVLVESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
+.-++...+.|+|.|-+- ..+++..++.+++.+++.+ ..+.+.+.+.+..+. +-.-+.+.++.+.+ .+++.|.+-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~-~Ga~~i~l~ 169 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGSPVH-TLEYYVKLAKELED-MGADSICIK 169 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCCC-CHHHHHHHHHHHHH-cCCCEEEEc
Confidence 345566778899987654 4456777888889998876 444444433222221 22223344444444 466666554
Q ss_pred CC----ChhhhHHHHHHHHhhcCCeEEEEe
Q 020275 242 CA----PPQFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 242 C~----~p~~~~~~l~~l~~~~~~pl~~yp 267 (328)
=+ .|..+..+++.+++..+.||.+..
T Consensus 170 DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 170 DMAGLLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 33 499999999999987777776644
No 32
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=93.15 E-value=6.9 Score=40.80 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH----------HHHH----HHHHHHHhcCCCccEEEEEEecCCCCC-CC
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPNK----------LEAQ----ALVELLEEENIQIPSWICFSSVDGENA-PS 218 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~----------~E~~----a~~~~~~~~~~~~pv~is~~~~~~~~l-~~ 218 (328)
..+.+++.|+.- +++|+|+|.--|+..- +++. .+++++++.. +.+++|.-++-.-+.. ..
T Consensus 41 ~Pe~i~~vH~~y----l~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~-~~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 41 HPELILRIHREY----IEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAA-GDDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred CHHHHHHHHHHH----HHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHh-cCCCeEEEeCCCCCCCCCC
Confidence 557787877755 4589999987777221 2222 3356566543 2567777776443332 12
Q ss_pred C-CCHHHHHHH-------HHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChh
Q 020275 219 G-ESFKECLDI-------INKSGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDG 289 (328)
Q Consensus 219 G-~~~~~~~~~-------~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~ 289 (328)
| .+.+++.+. +.+ .+++.+.+.-. +...+..+++.+++..+.|+++-=..- +. . .+. +-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~-~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~---~~-g--~l~----~G~ 184 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLE-EGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFH---ED-G--VTQ----NGT 184 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEEC---CC-C--eeC----CCC
Confidence 3 355655432 222 57899999886 467787888888765446654422210 00 0 111 111
Q ss_pred HHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 290 KFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 290 ~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
.+.+.+....+.|+..||=.|..+|+++..+-+.+.
T Consensus 185 ~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~ 220 (612)
T PRK08645 185 SLEEALKELVAAGADVVGLNCGLGPYHMLEALERIP 220 (612)
T ss_pred CHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 245555545567899999999999999998877664
No 33
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.11 E-value=1.5 Score=41.31 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=50.4
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCCh----------------hhhHHHHHHHHhhcCCeEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPP----------------QFVENLICYFKELTKKAIV 264 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p----------------~~~~~~l~~l~~~~~~pl~ 264 (328)
+.|+++|+.... +-+.+.++++.+.+ .++++|-+||+.| +.+..+++.+++..+.|+.
T Consensus 99 ~~p~i~si~G~~-----~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~ 172 (299)
T cd02940 99 DKILIASIMCEY-----NKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI 172 (299)
T ss_pred CCeEEEEecCCC-----CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE
Confidence 589999985320 11234455555543 4688999998754 3466677777777778988
Q ss_pred EEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 265 VYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 265 ~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
++-.. +..++.+.++.+.+.|+.
T Consensus 173 vKl~~-----------------~~~~~~~~a~~~~~~Gad 195 (299)
T cd02940 173 AKLTP-----------------NITDIREIARAAKEGGAD 195 (299)
T ss_pred EECCC-----------------CchhHHHHHHHHHHcCCC
Confidence 85321 112456666667777764
No 34
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.04 E-value=2 Score=39.95 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEE--EEEecCC----CCCCCCCCH---HHHHHHHHh--
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWI--CFSSVDG----ENAPSGESF---KECLDIINK-- 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~i--s~~~~~~----~~l~~G~~~---~~~~~~~~~-- 231 (328)
+.-++.+.++|++.+-+|-- .|....++++.+. +.||+- -++.... +...-|.+- .++++..+.
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~ 171 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALE 171 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHC--CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHH
Confidence 33445555589999999975 4666667777766 489872 2222211 122234443 334433221
Q ss_pred cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 232 SGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
..+++++=+-|... .+.+.+.+..+.|++-
T Consensus 172 eAGA~~i~lE~v~~----~~~~~i~~~l~iP~ig 201 (264)
T PRK00311 172 EAGAFALVLECVPA----ELAKEITEALSIPTIG 201 (264)
T ss_pred HCCCCEEEEcCCCH----HHHHHHHHhCCCCEEE
Confidence 25899999999954 3555666666778654
No 35
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.02 E-value=1.5 Score=40.73 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+.+ +..++.+++.|||.+++- | .-+.+|-+.+++.+.+. +.+.|+++.+ .+.+..++
T Consensus 18 iD~~~~----~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~ 84 (284)
T cd00950 18 VDFDAL----ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAEA 84 (284)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHHHH
Confidence 565554 677888888999998644 3 35678888888877664 3257888777 34567777
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
++.++. ..++++|.+-=- .++.+....+.+.+..+.|+++|-|-
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 776543 245665554421 12456666677777778999999764
No 36
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.00 E-value=8.5 Score=37.52 Aligned_cols=111 Identities=25% Similarity=0.297 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+|+...++-++++++|.|.|.-.-=..+... ++.++-.++.+.+++.|.+ + +++++.+++.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~-----~~~eER~~~v~~av~~a~~-------~-------TG~~~~y~~n 204 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDELLADQPY-----APFEERVRACMEAVRRANE-------E-------TGRKTLYAPN 204 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccccccCccc-----CCHHHHHHHHHHHHHHHHH-------h-------hCCcceEEEE
Confidence 4778999999999999999864322222211 1223333444444444332 1 3455566665
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
+.. +.+|+ .++++...+.|+|.+++-....--.+ ++.+++.. ++|++.=+
T Consensus 205 it~-------------------~~~e~----i~~a~~a~~~Gad~vmv~~~~~g~~~---~~~l~~~~-~lpi~~H~ 254 (367)
T cd08205 205 ITG-------------------DPDEL----RRRADRAVEAGANALLINPNLVGLDA---LRALAEDP-DLPIMAHP 254 (367)
T ss_pred cCC-------------------CHHHH----HHHHHHHHHcCCCEEEEecccccccH---HHHHHhcC-CCeEEEcc
Confidence 522 11333 45666667899999998766553221 22233333 57776544
No 37
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.99 E-value=7.9 Score=36.19 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCeEEE------------ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 161 FHRRRLQVLVESGPDLLAF------------ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~------------ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
.|...++.+.++|+|.|=+ +-..+...+..+++++++.- +.|+++-++.. -+.+.+.++.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~-------~~~~~~~a~~ 174 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPN-------VTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCC-------chhHHHHHHH
Confidence 3566777778889999855 22356677778888888763 69999888632 1235555665
Q ss_pred HHhcCCceEE-EECCCCh---h----------------------hhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccC
Q 020275 229 INKSGKVNAV-GINCAPP---Q----------------------FVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLP 282 (328)
Q Consensus 229 ~~~~~~~~~i-GvNC~~p---~----------------------~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~ 282 (328)
+.+ .++++| -+|++.. + .....++++++..+.|++. |+|.
T Consensus 175 ~~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~--~GGI----------- 240 (296)
T cd04740 175 AEE-AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIG--VGGI----------- 240 (296)
T ss_pred HHH-cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEE--ECCC-----------
Confidence 554 466664 3455320 0 1224556666655566543 4331
Q ss_pred CCCCChhHHHHHHHHHHHcCCeEEeecCCC--ChHHHHHHHHHHh
Q 020275 283 SKCLGDGKFESFATRWRDSGAKLIGGCCRT--TPSTIQAVSKVLK 325 (328)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt--~P~hI~al~~~l~ 325 (328)
.++++..+ ++..|+..|+=|-+. +|..++.|.+.+.
T Consensus 241 ---~~~~da~~----~l~~GAd~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 241 ---ASGEDALE----FLMAGASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred ---CCHHHHHH----HHHcCCCEEEEchhhhcChHHHHHHHHHHH
Confidence 13434433 556788877755443 7888888877664
No 38
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.88 E-value=3.5 Score=38.36 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=44.1
Q ss_pred ceEEEeecCCcccCcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 020275 125 RALVAASIGSYGAYLADGSEYSGNYGP-GVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 125 ~~~VaGsiGP~g~~l~~~~eY~g~y~~-~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.+-|.|=||=.+-+... .|.|.- .-+.+++ +.-.++++.+.++|+|.|++|-+|+ ++++.+.+.+ +.|
T Consensus 130 gIpV~gHiGL~pq~~~~----~gg~~i~grt~~~a-~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l-----~iP 198 (264)
T PRK00311 130 GIPVMGHLGLTPQSVNV----LGGYKVQGRDEEAA-EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEAL-----SIP 198 (264)
T ss_pred CCCEeeeecccceeecc----cCCeeeecCCHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCC
Confidence 35577766655433211 122321 1143444 3445688999999999999999987 6766666643 477
Q ss_pred EEEEE
Q 020275 204 SWICF 208 (328)
Q Consensus 204 v~is~ 208 (328)
++ .+
T Consensus 199 ~i-gi 202 (264)
T PRK00311 199 TI-GI 202 (264)
T ss_pred EE-Ee
Confidence 65 55
No 39
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.81 E-value=4.3 Score=38.40 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++++. +++.++.+.+.|||.|++- | .-+.+|=+.+++.+.+. +..+|+++.. .+.+..++
T Consensus 22 vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 22 VDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 56555 4788899999999977542 2 23567777777777764 3358988877 35566778
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
++..+. ..+++++.+=.. ..+.+....+.+...++.|+++|=+-+
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 765533 257787777653 135566667777777789999997654
No 40
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.69 E-value=3.1 Score=38.41 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=67.4
Q ss_pred eEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 020275 126 ALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 126 ~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
.+|...+ |||.| .+ +.+++ .+.-++.+.++|++.+-+|-- .|....++++.+.+ .||+
T Consensus 74 p~viaD~-~fg~y-----------~~--~~~~a---v~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~ag--ipV~ 131 (254)
T cd06557 74 ALVVADM-PFGSY-----------QT--SPEQA---LRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAG--IPVM 131 (254)
T ss_pred CeEEEeC-CCCcc-----------cC--CHHHH---HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcC--CCee
Confidence 4566777 76643 21 44443 233444555599999999974 47777788888764 8888
Q ss_pred EEEEecC--CC----CCCCCCC---HHHHHHHHHh--cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 206 ICFSSVD--GE----NAPSGES---FKECLDIINK--SGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 206 is~~~~~--~~----~l~~G~~---~~~~~~~~~~--~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
--+-+.. .. ...-|.+ .+++++.... ..+++++=+-|... ..++++.+..+.|++-
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~----~~~~~i~~~v~iP~ig 198 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA----ELAKEITEALSIPTIG 198 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH----HHHHHHHHhCCCCEEE
Confidence 3333222 21 1223333 3344433321 25899999999953 4666666666788654
No 41
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.68 E-value=7.1 Score=34.84 Aligned_cols=89 Identities=13% Similarity=0.230 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCeEEEecC----CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 163 RRRLQVLVESGPDLLAFETI----PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~----~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
.++++.+.++|+|++++-.- |+..+...+++.+++.+ ++|+++.+ .+.+++....+ .+++.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v-----------~t~~ea~~a~~--~G~d~i 147 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADI-----------STLEEALNAAK--LGFDII 147 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEEC-----------CCHHHHHHHHH--cCCCEE
Confidence 45889999999998877421 22236667777777776 67877644 24566655443 467888
Q ss_pred EEC-CC-------ChhhhHHHHHHHHhhcCCeEEE
Q 020275 239 GIN-CA-------PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 239 GvN-C~-------~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
++| .. ........++.+++..+.|+++
T Consensus 148 ~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia 182 (219)
T cd04729 148 GTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA 182 (219)
T ss_pred EccCccccccccCCCCCCHHHHHHHHHhcCCCEEE
Confidence 774 21 0112236777777766677654
No 42
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.64 E-value=5.9 Score=37.13 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+.+ +.+++.+.+.|||.|++- | .-+.+|=+.+++.+.+. +.++||++.+. . +..++
T Consensus 18 iD~~~l----~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~---------~-~t~~~ 83 (289)
T cd00951 18 FDEDAY----RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG---------Y-GTATA 83 (289)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC---------C-CHHHH
Confidence 566654 778888889999998554 3 33567777777765553 33689998873 1 34555
Q ss_pred HHHHHh--cCCceEEEECCCC-----hhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 226 LDIINK--SGKVNAVGINCAP-----PQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~~-----p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
++.++. ..+++++.+--.. .+.+....+.+.+.++.|+++|=+.|
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g 135 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRAN 135 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 554422 2577887774421 24466666777777789999996555
No 43
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.58 E-value=2.4 Score=39.52 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHh-cCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh--
Q 020275 161 FHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEE-ENIQIPSWICFSSVDGENAPSGESFKECLDIINK-- 231 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-- 231 (328)
.+++.++.+.+.|+|.|++= | .-+.+|-+.+++.+.+ .+.+.|+++.+. +.+..++++.++.
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHHHHHHHHHh
Confidence 35778888999999998773 2 2245777777777655 333689999884 4567777766532
Q ss_pred cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 232 SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 232 ~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
..+++++.+--- +.+.+....+.+.+.++.|+++|-+-
T Consensus 94 ~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 94 DAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 257787766432 34667777888888889999999885
No 44
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.40 E-value=9 Score=35.40 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH
Q 020275 147 GNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK 185 (328)
Q Consensus 147 g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~ 185 (328)
+.|.. +.+++.++-.+-++.|.++|+|.+++|.+.+.
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 44543 88999999999999999999999999998765
No 45
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.30 E-value=2.7 Score=39.53 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEe
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~ 210 (328)
--+|.+...++|+|++++|.+.+.+|++.+.+.+ +.|+++.++.
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i-----~~Pl~~n~~~ 206 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV-----KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCCEEEEecc
Confidence 3668899999999999999999999988766654 3788877753
No 46
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.16 E-value=3.6 Score=38.71 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+. ++..++.+.+.|||.|++- | .-+.+|=+.+++.+.+. +.++|+++.+. .+..++
T Consensus 23 iD~~~----l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~a 88 (296)
T TIGR03249 23 FDEAA----YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSDA 88 (296)
T ss_pred cCHHH----HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHHH
Confidence 56555 4778888999999998753 3 34567877888765553 33689998762 235667
Q ss_pred HHHHHh--cCCceEEEECCCC-----hhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 226 LDIINK--SGKVNAVGINCAP-----PQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~~-----p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
++.++. ..+++++.+---. .+.+....+.+.+.++.|+++|=+.|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g 140 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 665532 2477877774421 23455556666666778999996555
No 47
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.13 E-value=10 Score=35.52 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=52.0
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCC-ceEEEECCCCh-------------hhhHHHHHHHHhhcCCeEEEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGK-VNAVGINCAPP-------------QFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~-~~~iGvNC~~p-------------~~~~~~l~~l~~~~~~pl~~y 266 (328)
+.|+++|+... +-+.+.+++..+.+ .+ +++|=+||..| +.+..+++.+++..+.|+++.
T Consensus 91 ~~p~i~si~g~------~~~~~~~~a~~~~~-aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK 163 (301)
T PRK07259 91 DTPIIANVAGS------TEEEYAEVAEKLSK-APNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVK 163 (301)
T ss_pred CCcEEEEeccC------CHHHHHHHHHHHhc-cCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999521 12234455555544 45 89999998532 346677778887777888886
Q ss_pred eCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 267 PNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 267 pN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
-+. +.+++.+.++.+.+.|+..
T Consensus 164 l~~-----------------~~~~~~~~a~~l~~~G~d~ 185 (301)
T PRK07259 164 LTP-----------------NVTDIVEIAKAAEEAGADG 185 (301)
T ss_pred cCC-----------------CchhHHHHHHHHHHcCCCE
Confidence 541 1235667777777778743
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.08 E-value=10 Score=35.38 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=51.7
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCCh-------------hhhHHHHHHHHhhcCCeEEEEe
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPP-------------QFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p-------------~~~~~~l~~l~~~~~~pl~~yp 267 (328)
+.|+++|+... +-+.+.+++..+.+ .++++|=+|+.+| +.+..+++.+++..+.|+++.-
T Consensus 89 ~~p~ivsi~g~------~~~~~~~~a~~~~~-~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 89 GTPVIASIAGS------TVEEFVEVAEKLAD-AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CCcEEEEEecC------CHHHHHHHHHHHHH-cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 58999999531 11234455555554 4788999998644 3455677777777778888764
Q ss_pred CCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 268 NSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 268 N~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
+. +.+++.+.++.+.+.|+..
T Consensus 162 ~~-----------------~~~~~~~~a~~~~~~G~d~ 182 (296)
T cd04740 162 TP-----------------NVTDIVEIARAAEEAGADG 182 (296)
T ss_pred CC-----------------CchhHHHHHHHHHHcCCCE
Confidence 31 1224667777777888753
No 49
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.03 E-value=4.3 Score=38.79 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=53.4
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhc-CCceEEEECCCCh-----------hhhHHHHHHHHhhcC-----CeE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKS-GKVNAVGINCAPP-----------QFVENLICYFKELTK-----KAI 263 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGvNC~~p-----------~~~~~~l~~l~~~~~-----~pl 263 (328)
+.|+++|+...+...+ -...++.+..+... ..+++|-+|++.| +.+..+++.+++... .|+
T Consensus 128 ~~plivsi~g~~~~~~--~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 128 GGPLGVNIGKNKDTPL--EDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred CCeEEEEEeCCCCCcc--cccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 5899999975432211 12234444333221 2378899998655 456677888877664 788
Q ss_pred EEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 264 VVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 264 ~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
.++-... .+.+++.+.++.+.+.|+.
T Consensus 206 ~vKl~~~---------------~~~~~~~~ia~~l~~aGad 231 (327)
T cd04738 206 LVKIAPD---------------LSDEELEDIADVALEHGVD 231 (327)
T ss_pred EEEeCCC---------------CCHHHHHHHHHHHHHcCCc
Confidence 7765321 1345677888888888863
No 50
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.88 E-value=10 Score=34.94 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=94.4
Q ss_pred cCCChHHHHHHHHHHHHhccceeecCCcC--CChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCce
Q 020275 49 LIKQPHLVKRVHLEYLEAGADILVTSSYQ--ATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRA 126 (328)
Q Consensus 49 ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 126 (328)
.++.+|.+.++=+.--++|+.+|.-..|- +|+.++. |+.. .+.+..+++++++ .+
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~--G~G~--------~gl~~L~~~~~~~-------------Gl 80 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQ--GLGL--------QGIRYLHEVCQEF-------------GL 80 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccC--CCCH--------HHHHHHHHHHHHc-------------CC
Confidence 47999999999988889999999999994 4444433 3332 2344555555543 23
Q ss_pred EEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEE
Q 020275 127 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 127 ~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
.|.-++ + + ..+++.+.+ .||++.+-.....+ ...++++.++ ++||++
T Consensus 81 ~~~Tev----------------~----d--------~~~v~~~~e-~vdilqIgs~~~~n--~~LL~~va~t--gkPVil 127 (250)
T PRK13397 81 LSVSEI----------------M----S--------ERQLEEAYD-YLDVIQVGARNMQN--FEFLKTLSHI--DKPILF 127 (250)
T ss_pred CEEEee----------------C----C--------HHHHHHHHh-cCCEEEECcccccC--HHHHHHHHcc--CCeEEE
Confidence 333332 1 1 457777776 69999877654433 2344555544 599997
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC-CCC--hhh-----hHHHHHHHHhhcCCeEEE
Q 020275 207 CFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN-CAP--PQF-----VENLICYFKELTKKAIVV 265 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN-C~~--p~~-----~~~~l~~l~~~~~~pl~~ 265 (328)
+= +...+-.....+++.+........+.+- |+. |.. =...+..+++.++.|+++
T Consensus 128 k~-----G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPViv 189 (250)
T PRK13397 128 KR-----GLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIV 189 (250)
T ss_pred eC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEE
Confidence 74 3333444455677777654344455566 753 322 125667777766778766
No 51
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.67 E-value=7.4 Score=36.57 Aligned_cols=130 Identities=20% Similarity=0.133 Sum_probs=77.7
Q ss_pred HHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCC-cccCcCC
Q 020275 64 LEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGS-YGAYLAD 141 (328)
Q Consensus 64 l~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP-~g~~l~~ 141 (328)
+++|.|.|... +.+|.... ...+.+.++.-+..+.+++.|++. + ..|.+++.- ++.
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~---------------g--~~v~~~i~~~~~~---- 146 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQA---------------G--VRVRGYVSCVLGC---- 146 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---------------C--CEEEEEEEEEecC----
Confidence 46789987766 45555433 334777666666666777776642 1 234433322 110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCC
Q 020275 142 GSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPS 218 (328)
Q Consensus 142 ~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~ 218 (328)
+|.+. .+. +++.+.++.+.+.|+|.|.+- |. -++.++...++.+++.-.+.| +.+.+-++ .
T Consensus 147 --~~~~~----~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~Hn~----~ 210 (287)
T PRK05692 147 --PYEGE----VPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFHDT----Y 210 (287)
T ss_pred --CCCCC----CCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEecCC----C
Confidence 22232 233 456777888888999998765 43 366888888888886421234 56765433 4
Q ss_pred CCCHHHHHHHHHh
Q 020275 219 GESFKECLDIINK 231 (328)
Q Consensus 219 G~~~~~~~~~~~~ 231 (328)
|..+..++..+..
T Consensus 211 Gla~AN~laA~~a 223 (287)
T PRK05692 211 GQALANIYASLEE 223 (287)
T ss_pred CcHHHHHHHHHHh
Confidence 7777777777754
No 52
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.48 E-value=5.2 Score=37.92 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEE-ec-----CCCHHHHHHHHHHHHh-cCCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAF-ET-----IPNKLEAQALVELLEE-ENIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+.+ +++++.+.+.|||.|++ -| .-+.+|-+.+++.+.+ .+.++||++... ..+..++
T Consensus 26 iD~~~l----~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~a 92 (309)
T cd00952 26 VDLDET----ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDT 92 (309)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHH
Confidence 565554 77889999999999875 23 3356787888876665 333589998873 3455677
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhc-CCeEEEEeCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELT-KKAIVVYPNS 269 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~-~~pl~~ypN~ 269 (328)
++.++. ..+++++.+-=- +.+.+....+.+.+.+ +.|+++|-|-
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 765532 247777776542 1355666677777777 5899999664
No 53
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.39 E-value=12 Score=34.60 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCC-ceEEEEC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGK-VNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~-~~~iGvN 241 (328)
.+-++.+.++|+|.+++=-.|. +|....++.+++.+ +..+.-++ ..++.+.....++...+ +..+.+|
T Consensus 105 e~f~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~g--l~~i~lv~--------P~T~~eri~~i~~~~~gfiy~vs~~ 173 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPL-EESGDLVEAAKKHG--VKPIFLVA--------PNADDERLKQIAEKSQGFVYLVSRA 173 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHCC--CcEEEEEC--------CCCCHHHHHHHHHhCCCCEEEEECC
Confidence 4567788899999998877765 78888899999886 54444443 34555544444443332 3344555
Q ss_pred CC-C-----hhhhHHHHHHHHhhcCCeEEE
Q 020275 242 CA-P-----PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 242 C~-~-----p~~~~~~l~~l~~~~~~pl~~ 265 (328)
=. . +..+...++++++.++.|+.+
T Consensus 174 G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 174 GVTGARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CCCCCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 21 1 245778888888887778665
No 54
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.03 E-value=6.5 Score=40.80 Aligned_cols=97 Identities=10% Similarity=0.173 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---HHHHHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFK---ECLDIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~~iGv 240 (328)
-++...+.|+|+| +|-.+.++..++..++++++.| .-+..+++..... -.+++ +.++.+.+ .+++.|.|
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G--~~~~~~i~yt~sp----~~t~e~~~~~ak~l~~-~Gad~I~I 173 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHK--KHAQGAICYTTSP----VHTLDNFLELGKKLAE-MGCDSIAI 173 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcC--CEEEEEEEecCCC----CCCHHHHHHHHHHHHH-cCCCEEEe
Confidence 4455677999998 6677888888999999999887 4444443332211 23344 44444443 46777766
Q ss_pred CCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
-=+ .|..+..+++.+++..+.|+.+.-.
T Consensus 174 kDtaG~l~P~~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 174 KDMAGLLTPTVTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred CCcccCCCHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 543 4999999999999887778766443
No 55
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.98 E-value=2.4 Score=39.63 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+.+ +..++.+.+.|||.|++- | .-+.+|=+.+++.+.+. +.++|+++.+ ...++.++
T Consensus 16 iD~~~~----~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~s~~~~ 82 (285)
T TIGR00674 16 VDFAAL----EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT---------GSNATEEA 82 (285)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC---------CCccHHHH
Confidence 565554 778888889999998763 2 34567777777766553 3358999876 34566777
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
++.++. ..+++++.+-=- +++.+....+.+.+.++.|+++|-|-
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 765542 246666655421 23556666777777778899999663
No 56
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.91 E-value=11 Score=35.27 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVES-GPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKE 224 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~-gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~ 224 (328)
++.+. ++..++.+++. |||.|++- | .-+.+|-+.+++.+.+. ...+|+++.+ ...++.+
T Consensus 18 iD~~~----~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ 84 (288)
T cd00954 18 INEDV----LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKE 84 (288)
T ss_pred CCHHH----HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHH
Confidence 55554 47788888889 99998553 2 22457777777766653 3257888877 3456677
Q ss_pred HHHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhc-CCeEEEEeCC
Q 020275 225 CLDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELT-KKAIVVYPNS 269 (328)
Q Consensus 225 ~~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~-~~pl~~ypN~ 269 (328)
+++.++. ..+++++.+--- +.+.+....+.+.+.+ +.|+++|-|-
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 7765532 257777776442 2355667777777778 7899999664
No 57
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.82 E-value=4.2 Score=38.91 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC-h-----------hhhHHHH
Q 020275 185 KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP-P-----------QFVENLI 252 (328)
Q Consensus 185 ~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~-p-----------~~~~~~l 252 (328)
+++....++.+++.. +.|+++++...+ -+.+.+++..+.+ .++++|-+|++. | +.+..++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~------~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSS------AGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCC------HHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHH
Confidence 344444444444432 589999994311 1123355555554 468899998643 1 1255677
Q ss_pred HHHHhhcCCeEEEEe
Q 020275 253 CYFKELTKKAIVVYP 267 (328)
Q Consensus 253 ~~l~~~~~~pl~~yp 267 (328)
+.+++..+.|++++-
T Consensus 158 ~~v~~~~~iPV~vKl 172 (334)
T PRK07565 158 RAVKSAVSIPVAVKL 172 (334)
T ss_pred HHHHhccCCcEEEEe
Confidence 888877788999874
No 58
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.78 E-value=7.2 Score=37.22 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCC-CeEEEecCCCHHHHHH-HHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 162 HRRRLQVLVESGP-DLLAFETIPNKLEAQA-LVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 162 h~~qi~~l~~~gv-D~i~~ET~~~~~E~~a-~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
||...+.+ |+ |+.+=|.+..-.=... --+.+.......|+++++.- .+.+.+.+++..+.+ .+.++|-
T Consensus 16 fR~l~~~~---g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g------~~p~~~~~aA~~~~~-~g~d~ID 85 (318)
T TIGR00742 16 FRYFLRLL---SKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG------SDPNDLAKCAKIAEK-RGYDEIN 85 (318)
T ss_pred HHHHHHHh---CCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc------CCHHHHHHHHHHHHh-CCCCEEE
Confidence 45554433 65 7877776654310000 00222222346889888842 133445566666654 4789999
Q ss_pred ECCCChhh-----------------hHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcC
Q 020275 240 INCAPPQF-----------------VENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSG 302 (328)
Q Consensus 240 vNC~~p~~-----------------~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 302 (328)
|||..|.. +..+++.+++..+.|+.++-..| |... .+.++..++++...+.|
T Consensus 86 lN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g---------~~~~--~~~~~~~~~~~~l~~~G 154 (318)
T TIGR00742 86 LNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG---------IDPL--DSYEFLCDFVEIVSGKG 154 (318)
T ss_pred EECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC---------CCCc--chHHHHHHHHHHHHHcC
Confidence 99975522 45666777777778998877655 2111 02345667788888899
Q ss_pred CeEE
Q 020275 303 AKLI 306 (328)
Q Consensus 303 ~~ii 306 (328)
+..|
T Consensus 155 ~~~i 158 (318)
T TIGR00742 155 CQNF 158 (318)
T ss_pred CCEE
Confidence 8644
No 59
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.66 E-value=16 Score=34.80 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHH---HHH---HHHHH---hcCCCccEEEEEEecCCCCCCCCCC---HHHHHHHH
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEA---QAL---VELLE---EENIQIPSWICFSSVDGENAPSGES---FKECLDII 229 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~---~a~---~~~~~---~~~~~~pv~is~~~~~~~~l~~G~~---~~~~~~~~ 229 (328)
||..++.+ .++|+.+=|.++...-. +.. ...+. ......|+.+++. |.+ +.+++..+
T Consensus 16 fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~ 84 (312)
T PRK10550 16 VRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL---------GQYPQWLAENAARA 84 (312)
T ss_pred HHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec---------cCCHHHHHHHHHHH
Confidence 45554444 35899999988742111 111 11111 1122479999884 444 44555555
Q ss_pred HhcCCceEEEECCCChh-----------------hhHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhH
Q 020275 230 NKSGKVNAVGINCAPPQ-----------------FVENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGK 290 (328)
Q Consensus 230 ~~~~~~~~iGvNC~~p~-----------------~~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~ 290 (328)
.+ .+.++|-|||..|. .+..+++.+++.+ +.|+.+.-..| |. +.++
T Consensus 85 ~~-~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g---------~~-----~~~~ 149 (312)
T PRK10550 85 VE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG---------WD-----SGER 149 (312)
T ss_pred HH-cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC---------CC-----CchH
Confidence 44 57899999997653 2334455556555 36888886654 21 1223
Q ss_pred HHHHHHHHHHcCC
Q 020275 291 FESFATRWRDSGA 303 (328)
Q Consensus 291 ~~~~~~~~~~~G~ 303 (328)
+.++++.+.+.|+
T Consensus 150 ~~~~a~~l~~~Gv 162 (312)
T PRK10550 150 KFEIADAVQQAGA 162 (312)
T ss_pred HHHHHHHHHhcCC
Confidence 5566666666665
No 60
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=90.55 E-value=13 Score=35.37 Aligned_cols=155 Identities=13% Similarity=0.024 Sum_probs=79.2
Q ss_pred cCCChHHH-----------HHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 020275 49 LIKQPHLV-----------KRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKK 117 (328)
Q Consensus 49 ll~~Pe~V-----------~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~ 117 (328)
+.++||.+ .+..+.++++|||+|....=.++.. -+++++.+++..-..+...+...++
T Consensus 164 ~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~-----~lsp~~f~e~~~p~~k~i~~~i~~~------ 232 (340)
T TIGR01463 164 ISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSD-----LISPETYKEFGLPYQKRLFAYIKEI------ 232 (340)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCcc-----ccCHHHHHHHHHHHHHHHHHHHHhc------
Confidence 46888754 4456777889999887655222211 2455666666554444444333221
Q ss_pred CCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHh
Q 020275 118 VPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEE 197 (328)
Q Consensus 118 ~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~ 197 (328)
+. ..+.-.+| ++ ...+..+.+.|+|.+.++...++.|++ +.
T Consensus 233 -----g~-~~ilH~CG--------------~~-------------~~~~~~l~~~g~d~ls~d~~~~l~~~~------~~ 273 (340)
T TIGR01463 233 -----GG-ITVLHICG--------------FT-------------QPILRDIANNGCFGFSVDMKPGMDHAK------RV 273 (340)
T ss_pred -----CC-ceEEEECC--------------Cc-------------hhhHHHHHHhCCCEEeecCCCCHHHHH------HH
Confidence 11 11222222 11 124566777899999999988887643 22
Q ss_pred cCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc--CCceEEEECCCC-----hhhhHHHHHHHH
Q 020275 198 ENIQIPSWICFSSVDGENAPSGESFKECLDIINKS--GKVNAVGINCAP-----PQFVENLICYFK 256 (328)
Q Consensus 198 ~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~--~~~~~iGvNC~~-----p~~~~~~l~~l~ 256 (328)
.+ +. +.+.-.++....+..|+ .+++.+.+++. .+-..++..|.- ++.+..+++..+
T Consensus 274 ~g-~~-~~i~Gnidp~~ll~~gt-~eeI~~~v~~~l~~~~~Il~~gcgi~~~tp~eni~a~v~a~~ 336 (340)
T TIGR01463 274 IG-GQ-ASLVGNLSPFSTLMNGT-PEKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACK 336 (340)
T ss_pred cC-Cc-eEEEecCChHHHhcCCC-HHHHHHHHHHHHHcCCeEECCCCCCCCCCCHHHHHHHHHHHH
Confidence 33 22 23233332222333453 34443333221 234566777852 355555555544
No 61
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.49 E-value=14 Score=34.09 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCce-EEEEC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVN-AVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-~iGvN 241 (328)
.+-++.+.++|||.+++=-+|- +|....++.+++.+ +..+.-++. -++.+.+-...+...+.. .++.+
T Consensus 107 e~f~~~~~~aGvdGviipDLp~-ee~~~~~~~~~~~g--l~~I~lvap--------~t~~eri~~i~~~s~gfIY~vs~~ 175 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPDLPP-EEAEELRAAAKKHG--LDLIFLVAP--------TTTDERLKKIASHASGFVYYVSRA 175 (258)
T ss_pred HHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHcC--CcEEEEeCC--------CCCHHHHHHHHHhCCCcEEEEeCC
Confidence 3457778889999999877764 79999999999886 433322221 122222222222223333 23554
Q ss_pred C-C-----ChhhhHHHHHHHHhhcCCeEEE
Q 020275 242 C-A-----PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 242 C-~-----~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
- + .+..+...++.+++.++.|+++
T Consensus 176 GvTG~~~~~~~~~~~~i~~vk~~~~~pv~v 205 (258)
T PRK13111 176 GVTGARSADAADLAELVARLKAHTDLPVAV 205 (258)
T ss_pred CCCCcccCCCccHHHHHHHHHhcCCCcEEE
Confidence 4 2 2466788899999888889876
No 62
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.33 E-value=4.8 Score=37.71 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVE-SGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKE 224 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~-~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~ 224 (328)
++.+.+ +..++.+.+ .|||.|++- | .-+.+|=+.+++.+.+. +.++|+++.+. ..+..+
T Consensus 21 iD~~~~----~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ 87 (293)
T PRK04147 21 IDEQGL----RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAE 87 (293)
T ss_pred cCHHHH----HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHH
Confidence 565554 778888888 999987653 2 22457777777766553 33588887762 345677
Q ss_pred HHHHHHh--cCCceEEEECCCC-----hhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 225 CLDIINK--SGKVNAVGINCAP-----PQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 225 ~~~~~~~--~~~~~~iGvNC~~-----p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
+++.++. ..+++++.+---. .+.+....+.+.+.++.|+++|-+-
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 7765533 2467776655421 2455666677777778999999653
No 63
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=3.1 Score=40.20 Aligned_cols=134 Identities=25% Similarity=0.288 Sum_probs=83.4
Q ss_pred HHHHhccceeecC-C-cCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCc
Q 020275 62 EYLEAGADILVTS-S-YQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYL 139 (328)
Q Consensus 62 ~yl~AGAdiI~Tn-T-y~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l 139 (328)
.=+++|||.|-.- + |.+.... ..++.++ ++.++++|+++ +.+++|+...=+...
T Consensus 21 ~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~----l~e~i~~ah~~---------------gkk~~V~~N~~~~~~-- 76 (347)
T COG0826 21 AAIAAGADAVYIGEKEFGLRRRA---LNFSVED----LAEAVELAHSA---------------GKKVYVAVNTLLHND-- 76 (347)
T ss_pred HHHHcCCCEEEeCCccccccccc---ccCCHHH----HHHHHHHHHHc---------------CCeEEEEeccccccc--
Confidence 3467899977643 3 4433222 2456443 67778888753 567899987755432
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCC-----
Q 020275 140 ADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGE----- 214 (328)
Q Consensus 140 ~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~----- 214 (328)
. .+ ...+.++.|.+.|||.|++= + -+++..+++.+.++|+.+|....-..
T Consensus 77 --------~------~~----~~~~~l~~l~e~GvDaviv~---D----pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~ 131 (347)
T COG0826 77 --------E------LE----TLERYLDRLVELGVDAVIVA---D----PGLIMLARERGPDLPIHVSTQANVTNAETAK 131 (347)
T ss_pred --------h------hh----HHHHHHHHHHHcCCCEEEEc---C----HHHHHHHHHhCCCCcEEEeeeEecCCHHHHH
Confidence 1 11 14667888999999999853 4 35677788776689999998753321
Q ss_pred ----------CCCCCCCHHHHHHHHHhcCC----ceEEEECCCC
Q 020275 215 ----------NAPSGESFKECLDIINKSGK----VNAVGINCAP 244 (328)
Q Consensus 215 ----------~l~~G~~~~~~~~~~~~~~~----~~~iGvNC~~ 244 (328)
-|+.=.|+.+..+...+.+. +...|--|..
T Consensus 132 f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia 175 (347)
T COG0826 132 FWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIA 175 (347)
T ss_pred HHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhc
Confidence 13333466666666554311 5667777753
No 64
>PRK15063 isocitrate lyase; Provisional
Probab=90.21 E-value=7.3 Score=38.63 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEE 197 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~ 197 (328)
-.|..+..+ |+|+|++|| .|+++|++.+++.++.
T Consensus 268 I~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 268 IARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 456777777 999999998 8999999999988863
No 65
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.08 E-value=12 Score=33.55 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCeEEEec-CCCH------HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCC---CCHHHHHHHHHhcC
Q 020275 164 RRLQVLVESGPDLLAFET-IPNK------LEAQALVELLEEENIQIPSWICFSSVDGENAPSG---ESFKECLDIINKSG 233 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET-~~~~------~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G---~~~~~~~~~~~~~~ 233 (328)
.+++...+.|+|.+.+.- +.+. .+++.+.+++++. +.|+++.... +..++... ..+..+++...+ .
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~--g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~~-~ 155 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY--GLPLIAWMYP-RGPAVKNEKDPDLIAYAARIGAE-L 155 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc--CCCEEEEEec-cCCcccCccCHHHHHHHHHHHHH-H
Confidence 357777789998764432 2222 2556666666655 5899986543 22222222 234444444443 5
Q ss_pred CceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 234 KVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 234 ~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
+++.|+++.+. -...++++.+..+.|+++- +|. ...+++++.+.+++.++.|++
T Consensus 156 GaD~Ik~~~~~---~~~~~~~i~~~~~~pvv~~--GG~------------~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 156 GADIVKTKYTG---DAESFKEVVEGCPVPVVIA--GGP------------KKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred CCCEEEecCCC---CHHHHHHHHhcCCCCEEEe--CCC------------CCCCHHHHHHHHHHHHHcCCc
Confidence 89999998653 1344555555566786543 221 002577788889999999985
No 66
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.93 E-value=17 Score=34.06 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcC-CCeEEE------------ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 162 HRRRLQVLVESG-PDLLAF------------ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 162 h~~qi~~l~~~g-vD~i~~------------ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
|...++.+.+.| +|.|=+ ....+...+..+++++++.- +.|+++-++. +-+.+.+.++.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~-------~~~~~~~~a~~ 177 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP-------NVTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC-------CchhHHHHHHH
Confidence 455666777788 998844 22334566777888888764 6899988863 11244556666
Q ss_pred HHhcCCceEEE-ECCC
Q 020275 229 INKSGKVNAVG-INCA 243 (328)
Q Consensus 229 ~~~~~~~~~iG-vNC~ 243 (328)
+.+ .++++|- +|++
T Consensus 178 l~~-~G~d~i~~~nt~ 192 (301)
T PRK07259 178 AEE-AGADGLSLINTL 192 (301)
T ss_pred HHH-cCCCEEEEEccc
Confidence 654 4677654 3543
No 67
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.85 E-value=12 Score=34.00 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=47.2
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHh-cCCceEEEECCCCh-----------------hhhHHHHHHHHhhcCCe
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINK-SGKVNAVGINCAPP-----------------QFVENLICYFKELTKKA 262 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~~~iGvNC~~p-----------------~~~~~~l~~l~~~~~~p 262 (328)
..|+++++. |.++++.+..+.. ...+++|-+||..| +.+..+++.++. .+.|
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~P 136 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKP 136 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCc
Confidence 469999984 4555555443321 13688999999744 335555666663 3678
Q ss_pred EEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 263 IVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 263 l~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
+.++--.+. +..+..++++...+.|+..|
T Consensus 137 VsvKiR~~~---------------~~~~~~~~a~~l~~aGad~i 165 (231)
T TIGR00736 137 IFVKIRGNC---------------IPLDELIDALNLVDDGFDGI 165 (231)
T ss_pred EEEEeCCCC---------------CcchHHHHHHHHHHcCCCEE
Confidence 877654331 12234556666666676433
No 68
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=89.68 E-value=18 Score=34.99 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCC----CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh-cCC
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIP----NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK-SGK 234 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~----~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~ 234 (328)
..-+..+++-.+.|+.+-+=. ++ +. |.+...+.+|+...+.|+++++.+... .|.+.+++.+.++. ...
T Consensus 77 ~in~~La~~a~~~G~~~~~Gs-~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~~----~~~~~~~~~~~~~~~~ad 150 (352)
T PRK05437 77 EINRKLAEAAEELGIAMGVGS-QRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQL----YGYGVEEAQRAVEMIEAD 150 (352)
T ss_pred HHHHHHHHHHHHcCCCeEecc-cHhhccCh-hhHHHHHHHHHHCCCceEEeecCcccc----CCCCHHHHHHHHHhcCCC
Confidence 444666666677786654422 22 22 355666777775447999999976432 24555555444432 134
Q ss_pred ceEEEECCC----Ch---hhhH---HHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 235 VNAVGINCA----PP---QFVE---NLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 235 ~~~iGvNC~----~p---~~~~---~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
...+++||. +| .... ..++.+++..+.|++++-++. . .+ .+.++.+.+.|+.
T Consensus 151 al~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~------------g--~s----~~~a~~l~~~Gvd 212 (352)
T PRK05437 151 ALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGF------------G--IS----KETAKRLADAGVK 212 (352)
T ss_pred cEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCC------------C--Cc----HHHHHHHHHcCCC
Confidence 567888883 22 1233 566777777788999876531 0 12 3555667788985
Q ss_pred E--EeecCCCChHHHH
Q 020275 305 L--IGGCCRTTPSTIQ 318 (328)
Q Consensus 305 i--iGGCCGt~P~hI~ 318 (328)
. |+|-+||+-..|.
T Consensus 213 ~I~Vsg~GGt~~~~ie 228 (352)
T PRK05437 213 AIDVAGAGGTSWAAIE 228 (352)
T ss_pred EEEECCCCCCCccchh
Confidence 4 6777787644443
No 69
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.58 E-value=15 Score=32.95 Aligned_cols=137 Identities=23% Similarity=0.207 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCCh-hhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATI-PGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~-~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
-.++.+++.......+|+++|.... ..|. ......+.+.++.-+....+++.|++. + ..|
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~---------------g--~~v- 124 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL---------------G--YEV- 124 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT---------------T--SEE-
T ss_pred ehHHHHHHHHHhhHhccCCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc---------------C--Cce-
Confidence 5567788877788899999988774 3444 334555666554444444445444431 2 223
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cCC--CHHHHHHHHHHHHhcCCCcc-EE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TIP--NKLEAQALVELLEEENIQIP-SW 205 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~~--~~~E~~a~~~~~~~~~~~~p-v~ 205 (328)
++++. +... .+.++ +.+.++.+.+.|+|.|.+- |+. .+.++.-+++.+++. .| +-
T Consensus 125 -~~~~~---------~~~~----~~~~~----~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~---~~~~~ 183 (237)
T PF00682_consen 125 -AFGCE---------DASR----TDPEE----LLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREA---LPDIP 183 (237)
T ss_dssp -EEEET---------TTGG----SSHHH----HHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHH---STTSE
T ss_pred -EeCcc---------cccc----ccHHH----HHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHh---ccCCe
Confidence 33331 1122 24444 4556677777899988766 554 567888888888875 33 67
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 206 ICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 206 is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
|.|.+-++ .|..+..++..+..
T Consensus 184 l~~H~Hnd----~Gla~An~laA~~a 205 (237)
T PF00682_consen 184 LGFHAHND----LGLAVANALAALEA 205 (237)
T ss_dssp EEEEEBBT----TS-HHHHHHHHHHT
T ss_pred EEEEecCC----ccchhHHHHHHHHc
Confidence 77776544 36677777777764
No 70
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.50 E-value=16 Score=33.19 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCH---HHHHHHHHhcCCceEEEEC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESF---KECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~---~~~~~~~~~~~~~~~iGvN 241 (328)
-.+.+.+.|..-|+.+- .+.-.+..+..+++. +.|+.+++. |.++ .+++..+.+ ..+.|-+|
T Consensus 40 aa~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~~--~~p~~vqi~---------g~~~~~~~~aa~~~~~--~~~~ielN 104 (233)
T cd02911 40 AARKLVKRGRKEFLPDD--PLEFIEGEIKALKDS--NVLVGVNVR---------SSSLEPLLNAAALVAK--NAAILEIN 104 (233)
T ss_pred HHHHHHhcCCccccccc--hHHHHHHHHHHhhcc--CCeEEEEec---------CCCHHHHHHHHHHHhh--cCCEEEEE
Confidence 44556666655444333 222233334444443 479999983 4444 455555543 35889999
Q ss_pred CCC-----------------hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 242 CAP-----------------PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 242 C~~-----------------p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
|.- |+.+..+++.+++ .+.|+.++-..| | + ++..++++.+.+.|+.
T Consensus 105 ~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g---------~------~-~~~~~la~~l~~aG~d 167 (233)
T cd02911 105 AHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG---------V------D-VDDEELARLIEKAGAD 167 (233)
T ss_pred CCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC---------c------C-cCHHHHHHHHHHhCCC
Confidence 973 3445666777766 478988876654 1 1 2345555666677776
Q ss_pred EEeecCC
Q 020275 305 LIGGCCR 311 (328)
Q Consensus 305 iiGGCCG 311 (328)
+|-+-++
T Consensus 168 ~ihv~~~ 174 (233)
T cd02911 168 IIHVDAM 174 (233)
T ss_pred EEEECcC
Confidence 6555443
No 71
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.39 E-value=3 Score=39.00 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEE-ec-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAF-ET-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+. ++..++.+++.|||.+++ -| .-+.+|=+.+++.+.+. +.++|+++.+. +.+..++
T Consensus 19 iD~~~----l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 85 (292)
T PRK03170 19 VDFAA----LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEA 85 (292)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHH
Confidence 56555 477888899999999873 33 34667877788766653 32589887773 4456777
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
++.++. ..+++++.+-=- +++.+....+.+.+.++.|+++|-+
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 765533 246776666321 1345666777777777899999955
No 72
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.39 E-value=11 Score=35.65 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
.-+|.+...++|+|+|++|.+.+.+|++.+++.+ ++|+++.++
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~~n~~ 210 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPILANIT 210 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEEEEec
Confidence 3668899999999999999999999998877754 489887775
No 73
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=89.30 E-value=21 Score=34.33 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=89.9
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCc--CCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSY--QATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRAL 127 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy--~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 127 (328)
++.++.+.++=+..-++|+++++...| ++|+.++. |+. ..+.++.+++++++ .+.
T Consensus 103 iEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~--G~g--------~~gL~~L~~~~~~~-------------Gl~ 159 (335)
T PRK08673 103 VESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQ--GLG--------EEGLKLLAEAREET-------------GLP 159 (335)
T ss_pred cCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccc--ccc--------HHHHHHHHHHHHHc-------------CCc
Confidence 588889999999999999999887766 33443322 222 44455666666543 222
Q ss_pred EEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEE
Q 020275 128 VAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 128 VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
|.-++ + + ..+++.+.+. +|++-+-. +.+.. .++.+.+. ++||+
T Consensus 160 v~tev----------------~----d--------~~~~~~l~~~-vd~lqIgAr~~~N~~----LL~~va~~--~kPVi 204 (335)
T PRK08673 160 IVTEV----------------M----D--------PRDVELVAEY-VDILQIGARNMQNFD----LLKEVGKT--NKPVL 204 (335)
T ss_pred EEEee----------------C----C--------HHHHHHHHHh-CCeEEECcccccCHH----HHHHHHcC--CCcEE
Confidence 33322 1 1 3466666655 88887654 33432 33333333 58998
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC-C--C-h----hhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 206 ICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC-A--P-P----QFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 206 is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC-~--~-p----~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
++=-. -.+=+.+..+++.+....+...+.+.| + . + ..=...+..+++.+..|++++|+-+
T Consensus 205 Lk~G~-----~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~ 272 (335)
T PRK08673 205 LKRGM-----SATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHA 272 (335)
T ss_pred EeCCC-----CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCC
Confidence 76421 001112445566665444556777777 2 2 2 1223455667766678998888743
No 74
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=89.29 E-value=6.7 Score=36.86 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHh-cCCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEE-ENIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++++.+ +++++.+++.|||.|++- | .-+.+|=+.+++.+.+ ...+.||++.+ .+.+..++
T Consensus 18 iD~~~l----~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv---------~~~~t~~a 84 (294)
T TIGR02313 18 IDEEAL----RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT---------GALNHDET 84 (294)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CcchHHHH
Confidence 566655 678888888999987642 2 2345676777775544 33368998776 34566777
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhc-CCeEEEEeC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELT-KKAIVVYPN 268 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~-~~pl~~ypN 268 (328)
++.+++ ..+++++.+-=- +.+.+....+.+.+.+ +.|+++|=+
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 765543 235555544321 1245666667777777 799999954
No 75
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.18 E-value=13 Score=32.77 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEE-----ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 020275 162 HRRRLQVLVESGPDLLAF-----ETIPNKLEAQALVELLEEENIQIPSWICFSSVD 212 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~-----ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~ 212 (328)
+.+.++.+.++|+|.|-+ ...|+.......++.+++.. +.|+-+-+.+.+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~v~d 72 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT-KLPLDVHLMVEN 72 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC-CCcEEEEeeeCC
Confidence 466889999999999998 65555222222334444332 245444444444
No 76
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.01 E-value=10 Score=35.81 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEe
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~ 210 (328)
-+|.+...++|+|+|++|...+.+|++.+++.+ +.|+++.+..
T Consensus 168 I~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~-----~~P~~~nv~~ 210 (294)
T TIGR02319 168 IRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI-----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc-----CCCeeEEEEe
Confidence 668889999999999999999999988877754 3788776654
No 77
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=88.89 E-value=16 Score=37.95 Aligned_cols=102 Identities=10% Similarity=0.179 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 163 RRRLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
+.-++...+.|+|+| +|-.+.++..++.+++++++.+...-+.|+++..... +=.-+.+.++.+.+ .+++.|.|-
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~---~~~~~~~~a~~l~~-~Gad~i~i~ 175 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH---TLQTWVDLAKQLED-MGVDSLCIK 175 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc---CHHHHHHHHHHHHH-cCCCEEEEC
Confidence 344666778999987 5557778888889999999886322234555432211 11223445555544 467766664
Q ss_pred CC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 242 CA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 242 C~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
=+ .|..+..+++.+++..+.||.+.-.
T Consensus 176 Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 176 DMAGLLKPYAAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 43 4999999999999887788877544
No 78
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=88.85 E-value=11 Score=36.26 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
--.|+..|.++|+|++- =|+|+.++++++-+..+. .+.|++.-+.|+ ..-|+..+. .+++.+=+|
T Consensus 36 tv~QI~~L~~aGceiVR-vavp~~~~A~al~~I~~~--~~iPlVADIHFd----------~~lAl~a~~--~g~dkiRIN 100 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVR-VTVPDRESAAAFEAIKEG--TNVPLVADIHFD----------YRLAALAMA--KGVAKVRIN 100 (346)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHhC--CCCCEEEeeCCC----------cHHHHHHHH--hccCeEEEC
Confidence 46699999999999987 479999998877765553 369999888874 223454454 367788888
Q ss_pred CC---ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHH
Q 020275 242 CA---PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWR 299 (328)
Q Consensus 242 C~---~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (328)
=. +.+.+..+++..++. +.|+-+=-|+|.+...-...| ...+++.+.+.+.+++
T Consensus 101 PGNig~~e~v~~vv~~ak~~-~ipIRIGVN~GSL~~~~~~ky---g~~t~eamveSAl~~v 157 (346)
T TIGR00612 101 PGNIGFRERVRDVVEKARDH-GKAMRIGVNHGSLERRLLEKY---GDATAEAMVQSALEEA 157 (346)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCcHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 75 367788887776654 678777778886421111111 1125667777665543
No 79
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=88.76 E-value=17 Score=36.64 Aligned_cols=99 Identities=11% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC-
Q 020275 166 LQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA- 243 (328)
Q Consensus 166 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~- 243 (328)
++...+.|+|+| +|--+.++..++.+++++++.|...-+.++.+..... +=+-+.+.++.+.+ .+++.|.|-=+
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~---t~~y~~~~a~~l~~-~Gad~I~IkDta 186 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVH---TLNYYLSLVKELVE-MGADSICIKDMA 186 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcC---cHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 666778999998 4556777788888899999887333345555442211 11113344554544 46777766543
Q ss_pred ---ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 244 ---PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 244 ---~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.|..+..+++.+++..+.||.+.-.
T Consensus 187 G~l~P~~v~~Lv~alk~~~~~pi~~H~H 214 (468)
T PRK12581 187 GILTPKAAKELVSGIKAMTNLPLIVHTH 214 (468)
T ss_pred CCcCHHHHHHHHHHHHhccCCeEEEEeC
Confidence 4999999999998876778776554
No 80
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.67 E-value=11 Score=36.19 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCCeEEEec----------CCCHHHHHHHHHHHHhcCC----CccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 161 FHRRRLQVLVESGPDLLAFET----------IPNKLEAQALVELLEEENI----QIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~ET----------~~~~~E~~a~~~~~~~~~~----~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
.|...++.+.+ ++|.|-+.. ..+...+..+++++++.-. ++||++-++.. . +-+.+.+.+
T Consensus 158 d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~--~---~~~~~~~ia 231 (344)
T PRK05286 158 DYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD--L---SDEELDDIA 231 (344)
T ss_pred HHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--C---CHHHHHHHH
Confidence 34566666643 699987762 2234556677777776431 28999999742 0 111245566
Q ss_pred HHHHhcCCceEEEE
Q 020275 227 DIINKSGKVNAVGI 240 (328)
Q Consensus 227 ~~~~~~~~~~~iGv 240 (328)
+.+.+ .++++|-+
T Consensus 232 ~~l~~-~Gadgi~~ 244 (344)
T PRK05286 232 DLALE-HGIDGVIA 244 (344)
T ss_pred HHHHH-hCCcEEEE
Confidence 66554 46676544
No 81
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.51 E-value=13 Score=34.96 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEEE
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
-+|++...++|+|.++++. .++.+|++.+++.++..-.++|+++
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 5678899999999999996 6999999988887763211578753
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.29 E-value=19 Score=33.14 Aligned_cols=94 Identities=10% Similarity=0.054 Sum_probs=60.2
Q ss_pred HHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHH---HHHHHHhcCCceEEEEC
Q 020275 166 LQVLVESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKE---CLDIINKSGKVNAVGIN 241 (328)
Q Consensus 166 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~---~~~~~~~~~~~~~iGvN 241 (328)
++...+.|+|.+-+- ..++..+++.+++.+++.+ ..+.+++. +-.+ .+.+. .++.+.+ .+++.|.+-
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~~--~~~~----~~~~~~~~~~~~~~~-~G~d~i~l~ 161 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFLM--MSHM----ASPEELAEQAKLMES-YGADCVYVT 161 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEEE--eccC----CCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 555667899987654 4455677888888888776 44544443 2222 33444 4444443 467777664
Q ss_pred ----CCChhhhHHHHHHHHhhcCC-eEEEEeC
Q 020275 242 ----CAPPQFVENLICYFKELTKK-AIVVYPN 268 (328)
Q Consensus 242 ----C~~p~~~~~~l~~l~~~~~~-pl~~ypN 268 (328)
+..|..+..+++.+++..+. ||.+...
T Consensus 162 DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 162 DSAGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred CCCCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 23599999999999987776 7766443
No 83
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=88.10 E-value=14 Score=34.81 Aligned_cols=156 Identities=22% Similarity=0.255 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHH-----------H----HHHHHHHhc----CCCccEEEEEEecCC-
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEA-----------Q----ALVELLEEE----NIQIPSWICFSSVDG- 213 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~-----------~----a~~~~~~~~----~~~~pv~is~~~~~~- 213 (328)
..+.+++.|++-+ ++|+|+|.--|+..-.+. + .+++.+++. ....+++|.-++-.-
T Consensus 39 ~p~~v~~iH~~yl----~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~g 114 (305)
T PF02574_consen 39 NPELVRQIHRDYL----EAGADIITTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYG 114 (305)
T ss_dssp -HHHHHHHHHHHH----HHT-SEEEEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S
T ss_pred CHHHHHHHHHHHH----HCCCCeEEecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccccc
Confidence 5678888888654 489999987777654321 1 224444432 112345666555422
Q ss_pred -------CCCCCCCCHHHHHHH-------HHhcCCceEEEECCCC-hhhhHHHHHHHHhhcCCe----EEEEeCCCCccC
Q 020275 214 -------ENAPSGESFKECLDI-------INKSGKVNAVGINCAP-PQFVENLICYFKELTKKA----IVVYPNSGEVWD 274 (328)
Q Consensus 214 -------~~l~~G~~~~~~~~~-------~~~~~~~~~iGvNC~~-p~~~~~~l~~l~~~~~~p----l~~ypN~g~~~d 274 (328)
-.-..+.+++++.+. +.+ .+++.+.+.-.+ ...+..+++.+++....| +-+..+ +...+
T Consensus 115 a~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~-~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~-~~l~~ 192 (305)
T PF02574_consen 115 AYLSGSEYPGDYGLSFEELRDFHREQAEALAD-AGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDS-GRLRD 192 (305)
T ss_dssp --------CTTCTT-HHHHHHHHHHHHHHHHH-TT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEE-ES-TC
T ss_pred ccchhhhccccccccHHHHHHHHHHHHHHHHh-cCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhh-ccccC
Confidence 223344566655432 222 479999998754 566777777777644444 223333 22212
Q ss_pred CccccccCCCCCChhHHHHHHHHHH---HcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 275 GRAKKWLPSKCLGDGKFESFATRWR---DSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
+ .+..+..+.+.+.. ..++..||=-|...|.+..+|.+...
T Consensus 193 g----------~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~ 236 (305)
T PF02574_consen 193 G----------TSLEDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMS 236 (305)
T ss_dssp T----------TBCTTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHH
T ss_pred C----------CCHHHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHh
Confidence 1 11222223322222 57899999999999999999887654
No 84
>PRK00865 glutamate racemase; Provisional
Probab=88.00 E-value=9.1 Score=35.33 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS 232 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 232 (328)
-+.+++.++-.+.++.|.+.|+|++++=..+... .+++.+|+.- ++|++= + +.++..+...
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~-~iPvig-i--------------~~a~~~a~~~ 107 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERY-DIPVVG-I--------------VPAIKPAAAL 107 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhC-CCCEEe-e--------------HHHHHHHHHh
Confidence 4889999999999999999999999876543321 2445566543 688872 2 3344433221
Q ss_pred CCceEEEECCCChh----hhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCC-eEEe
Q 020275 233 GKVNAVGINCAPPQ----FVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGA-KLIG 307 (328)
Q Consensus 233 ~~~~~iGvNC~~p~----~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~iiG 307 (328)
..-.-|||=.+... .....+++.. ....+...|..+...- ....+.. .......+.+++..+.+.|+ .||=
T Consensus 108 ~~~~~igVLaT~~Ti~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~-ie~g~~~-~~~~~~~l~~~l~~l~~~g~d~iIL 183 (261)
T PRK00865 108 TRNGRIGVLATPGTVKSAAYRDLIARFA--PDCQVESLACPELVPL-VEAGILG-GPVTLEVLREYLAPLLAAGIDTLVL 183 (261)
T ss_pred cCCCeEEEEECHHHhhchHHHHHHHHhC--CCCEEEEecCHHHHHH-HhCCCcC-CHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 12234666666432 2333333321 1223444565431100 0000100 00112346666777777787 5566
Q ss_pred ecCC
Q 020275 308 GCCR 311 (328)
Q Consensus 308 GCCG 311 (328)
||-.
T Consensus 184 GCTh 187 (261)
T PRK00865 184 GCTH 187 (261)
T ss_pred CCcC
Confidence 6743
No 85
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.85 E-value=26 Score=33.61 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=51.1
Q ss_pred ceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC---
Q 020275 235 VNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR--- 311 (328)
Q Consensus 235 ~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG--- 311 (328)
..-|.+.|+..+.+.+.++..++. ...+.+.+-. .+ ..+++.+.++++...+.|+..|. .|-
T Consensus 103 ~iri~~~~~e~d~~~~~i~~ak~~-G~~v~~~l~~---------s~----~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G 167 (333)
T TIGR03217 103 TVRVATHCTEADVSEQHIGMAREL-GMDTVGFLMM---------SH----MTPPEKLAEQAKLMESYGADCVY-IVDSAG 167 (333)
T ss_pred EEEEEeccchHHHHHHHHHHHHHc-CCeEEEEEEc---------cc----CCCHHHHHHHHHHHHhcCCCEEE-EccCCC
Confidence 344667788777777888877654 2233222210 01 13688899999999999997774 333
Q ss_pred -CChHHHHHHHHHHhc
Q 020275 312 -TTPSTIQAVSKVLKE 326 (328)
Q Consensus 312 -t~P~hI~al~~~l~~ 326 (328)
.+|++++++-+.++.
T Consensus 168 ~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 168 AMLPDDVRDRVRALKA 183 (333)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 389999988777753
No 86
>PRK07534 methionine synthase I; Validated
Probab=87.17 E-value=29 Score=33.37 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH----------HHHH----HHHHHHHhcC--CCccEEEEEEecCCCC-C
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPNK----------LEAQ----ALVELLEEEN--IQIPSWICFSSVDGEN-A 216 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~----------~E~~----a~~~~~~~~~--~~~pv~is~~~~~~~~-l 216 (328)
..+.+++.|+.- +++|+|+|.--|+..- ++++ .+++.+++.. ...+++|.-++-.-+. +
T Consensus 43 ~Pe~V~~vH~~Y----l~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGF----VDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHH----HHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 457777777754 4589999998887322 1222 2244444321 1246777777655443 3
Q ss_pred CC-C-CCHHHHHH-------HHHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCC
Q 020275 217 PS-G-ESFKECLD-------IINKSGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCL 286 (328)
Q Consensus 217 ~~-G-~~~~~~~~-------~~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~ 286 (328)
.+ | .+.+++.. .+.+ .+++.|.+--. +...+..+++.++. .+.|+++.-..- +. . .+. .+.
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~-~gvD~l~~ET~p~l~E~~a~~~~~~~-~~~Pv~vSft~~---~~-g--~l~-~G~ 189 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKA-GGADVLWVETISAPEEIRAAAEAAKL-AGMPWCGTMSFD---TA-G--RTM-MGL 189 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeccCCHHHHHHHHHHHHH-cCCeEEEEEEEC---CC-C--eeC-CCC
Confidence 22 3 24544432 2322 57999999875 46777777777765 377876533211 10 0 111 113
Q ss_pred ChhHHHHHHHHHHHcCCeEEeecCCCChHHH-HHHHHHH
Q 020275 287 GDGKFESFATRWRDSGAKLIGGCCRTTPSTI-QAVSKVL 324 (328)
Q Consensus 287 ~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI-~al~~~l 324 (328)
+.++..+.+.+ ...++..||==|+.+|+|+ +.+.+.+
T Consensus 190 ~~~~~~~~~~~-~~~~~~avGvNC~~gp~~~~~~l~~~~ 227 (336)
T PRK07534 190 TPADLADLVEK-LGEPPLAFGANCGVGASDLLRTVLGFT 227 (336)
T ss_pred cHHHHHHHHHh-cCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 44455555433 1224489999999999998 6665543
No 87
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.00 E-value=13 Score=36.60 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCeEEEec-C--------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 162 HRRRLQVLVESGPDLLAFET-I--------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
|.+.++.+.+.|+|.|=+-. . .+.+-+..+++++++.. ++|+|+-++. +-+.+.+.+
T Consensus 129 ~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsP-------n~t~i~~ia 200 (385)
T PLN02495 129 WEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTP-------NITDITQPA 200 (385)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCC-------ChhhHHHHH
Confidence 35556666778999986642 1 34455677778887754 6999999984 333477777
Q ss_pred HHHHhcCCceE-EEECCCC
Q 020275 227 DIINKSGKVNA-VGINCAP 244 (328)
Q Consensus 227 ~~~~~~~~~~~-iGvNC~~ 244 (328)
+.+.+ .++++ +.+|-+.
T Consensus 201 ~aa~~-~Gadgi~liNT~~ 218 (385)
T PLN02495 201 RVALK-SGCEGVAAINTIM 218 (385)
T ss_pred HHHHH-hCCCEEEEecccC
Confidence 76655 35665 5557653
No 88
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.96 E-value=3.2 Score=35.92 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+|++..++.|+|.|.+.+| ++++++.+++.+++.+.. +.|.++ .|-+++.+.++.. .+++.|++-+
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~--v~ie~S--------GGI~~~ni~~ya~--~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR--VKIEAS--------GGITLENIAEYAK--TGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT--SEEEEE--------SSSSTTTHHHHHH--TT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc--EEEEEE--------CCCCHHHHHHHHh--cCCCEEEcCh
Confidence 4566677799999999998 679999999988877533 555554 4556666666553 4788888866
No 89
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=86.94 E-value=26 Score=32.57 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEE-Ee---cCC----CHHHHHH-HHHHHHh----cC-CCccEEEEEEecCCCCCCCCCC
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLA-FE---TIP----NKLEAQA-LVELLEE----EN-IQIPSWICFSSVDGENAPSGES 221 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~-~E---T~~----~~~E~~a-~~~~~~~----~~-~~~pv~is~~~~~~~~l~~G~~ 221 (328)
+.+.+...+.++.+.++|+|+|. .| +.. +.++.+. +...+++ .. .+.|+++ ++| |..
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~l-H~c--------g~~ 210 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVH-HSC--------YDA 210 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEE-EEC--------CCH
Confidence 45556677888889999999764 44 222 3333332 2222222 11 1345554 333 222
Q ss_pred HHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHc
Q 020275 222 FKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDS 301 (328)
Q Consensus 222 ~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (328)
...+..+.+ .+++.+++-... ..+..+.+.+ +....+..|-- +. ... -++++..+.+++.++.
T Consensus 211 -~~~~~~l~~-~~~d~~~~d~~~-~d~~~~~~~~----~~~~~i~Ggv~----~~---~~~---~~~e~i~~~v~~~l~~ 273 (306)
T cd00465 211 -ADLLEEMIQ-LGVDVISFDMTV-NEPKEAIEKV----GEKKTLVGGVD----PG---YLP---ATDEECIAKVEELVER 273 (306)
T ss_pred -HHHHHHHHH-hCcceEeccccc-CCHHHHHHHh----CCCEEEECCCC----cc---ccC---CCHHHHHHHHHHHHHH
Confidence 344555554 357777766553 2344444443 22344445531 11 111 1467899999988886
Q ss_pred CC--eEEeecCCCC----h--HHHHHHHHHHh
Q 020275 302 GA--KLIGGCCRTT----P--STIQAVSKVLK 325 (328)
Q Consensus 302 G~--~iiGGCCGt~----P--~hI~al~~~l~ 325 (328)
+. -|++--||.. + +.|+++.++++
T Consensus 274 ~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 274 LGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred hCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 54 6788778654 3 89999988765
No 90
>PRK06852 aldolase; Validated
Probab=86.89 E-value=15 Score=34.84 Aligned_cols=102 Identities=10% Similarity=0.162 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCC--------CCCCCHHHHHHHHHh-cC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENA--------PSGESFKECLDIINK-SG 233 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l--------~~G~~~~~~~~~~~~-~~ 233 (328)
+..++.+.++|+|.|+.= +.+++.......+.|+++-++-...... .--.++++|++.=.. ..
T Consensus 62 ~~~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~ 133 (304)
T PRK06852 62 EHLFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGL 133 (304)
T ss_pred HHHHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCC
Confidence 346777788899999843 5555554433347898888763211110 011245565542111 13
Q ss_pred CceEEEECCC-ChhhhHHHHHHHHhh------cCCeEE--EEeCCCCc
Q 020275 234 KVNAVGINCA-PPQFVENLICYFKEL------TKKAIV--VYPNSGEV 272 (328)
Q Consensus 234 ~~~~iGvNC~-~p~~~~~~l~~l~~~------~~~pl~--~ypN~g~~ 272 (328)
+++||++..- ..+.-...|+.+.+. ...|++ +||-+...
T Consensus 134 ~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 134 NILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred CceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 4778888774 233323344333322 245765 68886544
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.86 E-value=26 Score=32.49 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCce-EEEEC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVN-AVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-~iGvN 241 (328)
.+-++.+.++|+|.+++=-+|. +|.....+.+++.+ +..+.-++. .++.+..-..++...+.. .+..+
T Consensus 109 e~F~~~~~~aGvdgviipDLP~-ee~~~~~~~~~~~g--i~~I~lv~P--------tT~~eri~~i~~~a~gFIY~vS~~ 177 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPDLPY-EESDYLISVCNLYN--IELILLIAP--------TSSKSRIQKIARAAPGCIYLVSTT 177 (263)
T ss_pred HHHHHHHHHcCCeEEEecCCCH-HHHHHHHHHHHHcC--CCEEEEECC--------CCCHHHHHHHHHhCCCcEEEEcCC
Confidence 4457778889999999888875 78888999999886 544444432 233333333333322222 23333
Q ss_pred CC------ChhhhHHHHHHHHhhcCCeEEE
Q 020275 242 CA------PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 242 C~------~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
=+ .++.+...++.++++++.|+.+
T Consensus 178 GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 178 GVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 32 1466888889999888889876
No 92
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.78 E-value=11 Score=36.29 Aligned_cols=93 Identities=10% Similarity=0.170 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCC--CeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEE-EEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 163 RRRLQVLVESGP--DLLAFE-TIPNKLEAQALVELLEEENIQIPSWIC-FSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 163 ~~qi~~l~~~gv--D~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
.++++.|+++|+ |+|.+- |-++...+..+++.+++.-.+.|+++. +. +.+++...++ .+++++
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l~~--aGad~i 165 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRELEN--AGADAT 165 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHHHH--cCcCEE
Confidence 578999999965 999985 666777777777778765435777763 32 5667766554 366765
Q ss_pred ------EECCCC--------hhhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 239 ------GINCAP--------PQFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 239 ------GvNC~~--------p~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
|-||+. |+.-.+++..+.+..+.|++ .++|
T Consensus 166 ~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVI--AdGG 209 (326)
T PRK05458 166 KVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPII--ADGG 209 (326)
T ss_pred EECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEE--EeCC
Confidence 566743 33344567777766667765 4544
No 93
>PLN02417 dihydrodipicolinate synthase
Probab=86.71 E-value=5.9 Score=36.93 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEe-c-----CCCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFE-T-----IPNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
++.+. ++++++.+++.|||.|++- | .-+.+|-+.+++.+.+. ...+|+++.+ ...+..++
T Consensus 19 iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv---------~~~~t~~~ 85 (280)
T PLN02417 19 FDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT---------GSNSTREA 85 (280)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CCccHHHH
Confidence 55554 5778888999999998662 3 23467777777765543 3358999777 34566777
Q ss_pred HHHHHh--cCCceEEEECCC-----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 226 LDIINK--SGKVNAVGINCA-----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 226 ~~~~~~--~~~~~~iGvNC~-----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
++.+++ ..+++++.+-=- +.+.+....+.+.+.. |+++|=+
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~ 133 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNV 133 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEEC
Confidence 776543 246666555221 1244555666666654 9999944
No 94
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=86.65 E-value=24 Score=33.76 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
++.++.+.+.|-=.++.+ + ++++....++-.+ +..+++.+|+...+ +.++.+...+++...+++|.+-.
T Consensus 48 ~~LA~~a~~~G~~~i~hK-~-~~E~~~sfvrk~k--~~~L~v~~SvG~t~-------e~~~r~~~lv~a~~~~d~i~~D~ 116 (321)
T TIGR01306 48 EKLAEQLAENGYFYIMHR-F-DEESRIPFIKDMQ--ERGLFASISVGVKA-------CEYEFVTQLAEEALTPEYITIDI 116 (321)
T ss_pred HHHHHHHHHcCCEEEEec-C-CHHHHHHHHHhcc--ccccEEEEEcCCCH-------HHHHHHHHHHhcCCCCCEEEEeC
Confidence 566777777788778888 4 6766555443333 22355655553211 11233444444322368888888
Q ss_pred CC--hhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 243 AP--PQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 243 ~~--p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
+| -..+...++.+++..+.|+++-+|-
T Consensus 117 ahg~s~~~~~~i~~i~~~~p~~~vi~GnV 145 (321)
T TIGR01306 117 AHGHSNSVINMIKHIKTHLPDSFVIAGNV 145 (321)
T ss_pred ccCchHHHHHHHHHHHHhCCCCEEEEecC
Confidence 75 5788889999998888888887874
No 95
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=86.60 E-value=4.5 Score=38.66 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCC-----------------CCCCCCCCHHH
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDG-----------------ENAPSGESFKE 224 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~-----------------~~l~~G~~~~~ 224 (328)
--.||..|.++|+|++- =|+|+.+.+.++-+..++. ++|.+.-|.++.. |+.-...-+.+
T Consensus 38 Tv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQRL--NVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 46799999999999987 5899998888777765544 6999999987532 22334456777
Q ss_pred HHHHHHhcCCceEEEECCCC
Q 020275 225 CLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 225 ~~~~~~~~~~~~~iGvNC~~ 244 (328)
.++.+....-|.=||+|-.+
T Consensus 115 vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHcCCCEEEecccCc
Confidence 78777665567789999986
No 96
>PRK15063 isocitrate lyase; Provisional
Probab=86.34 E-value=37 Score=33.75 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCCeEEEecCC---------------CHHHHHHHHHHHHhc--CCCccEEEEEEecCCC-----------
Q 020275 163 RRRLQVLVESGPDLLAFETIP---------------NKLEAQALVELLEEE--NIQIPSWICFSSVDGE----------- 214 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~~~~~~--~~~~pv~is~~~~~~~----------- 214 (328)
.+.++.+.++|+-.|-||-.- +..|...=+.+++.. -.+.|++|---.+...
T Consensus 164 ~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 164 FELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccc
Confidence 446888999999999999762 334443334443321 1146766655444321
Q ss_pred --------CCCCC-----CCHHHHHHHHHh-cCCceEEEECCC--ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccc
Q 020275 215 --------NAPSG-----ESFKECLDIINK-SGKVNAVGINCA--PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAK 278 (328)
Q Consensus 215 --------~l~~G-----~~~~~~~~~~~~-~~~~~~iGvNC~--~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~ 278 (328)
++..| ..+++|++.... ..+.+.|=+-.. .++.+..+.+.++...+.-+++|+.+.. -
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPs------f 317 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPS------F 317 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCC------c
Confidence 23334 457888875543 136666666542 3566666666664322222777754321 2
Q ss_pred cccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 279 KWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
.|... ++++++..|.+++.+.|.+++
T Consensus 318 nW~~~--~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 318 NWKKN--LDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred ccccc--cCHHHHHHHHHHHHHcCceEE
Confidence 36433 688899999999999997553
No 97
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=86.32 E-value=30 Score=38.95 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=68.6
Q ss_pred HHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---HHHHHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFK---ECLDIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~~iGv 240 (328)
-++...+.|+|+| +|..+.++..++.+++++++.+...-.-|+++-+--.-...-.+++ +.+..+.+ .+++.|.|
T Consensus 630 f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~-~Gad~I~i 708 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK-AGAHILGI 708 (1143)
T ss_pred HHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 3455667999998 7789999999999999999987433344454410000011122344 44444444 46777776
Q ss_pred CCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
-=+ .|..+..+++.+++..+.||.+.-.
T Consensus 709 kDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~H 740 (1143)
T TIGR01235 709 KDMAGLLKPAAAKLLIKALREKTDLPIHFHTH 740 (1143)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 554 4999999999999887788877554
No 98
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=86.24 E-value=5 Score=41.33 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHH---hcCCCccEEEEEEecC
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLE---EENIQIPSWICFSSVD 212 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~---~~~~~~pv~is~~~~~ 212 (328)
--.|+..|.++|+|++- =|+|+..|++++-+..+ +.+.+.|.+.-+.++.
T Consensus 43 tv~Qi~~l~~aGceiVR-vtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVR-LTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 35699999999999987 48999999887755433 3456799998887754
No 99
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.23 E-value=5.8 Score=35.41 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCeEEEecC----CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 163 RRRLQVLVESGPDLLAFETI----PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~----~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
.++++.+.++|+|++++-.- |+..++..+++.+++. .+.|+++.. .+.+++....+ .+++.+
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v-----------~t~ee~~~a~~--~G~d~i 143 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADC-----------STLEEGLAAQK--LGFDFI 143 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeC-----------CCHHHHHHHHH--cCCCEE
Confidence 45788888999998876432 2225677788888873 357777543 25666654433 467888
Q ss_pred EECCC--------ChhhhHHHHHHHHhhcCCeEEE
Q 020275 239 GINCA--------PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 239 GvNC~--------~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
++|-. .......+++++++..+.|+++
T Consensus 144 ~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia 178 (221)
T PRK01130 144 GTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA 178 (221)
T ss_pred EcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE
Confidence 77521 1122346778887777778665
No 100
>PRK12677 xylose isomerase; Provisional
Probab=86.21 E-value=31 Score=33.80 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhccc--eeecCCcCCChhhHHhC-CCCH---HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCc-eE
Q 020275 55 LVKRVHLEYLEAGAD--ILVTSSYQATIPGFLSR-GLSI---EEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNR-AL 127 (328)
Q Consensus 55 ~V~~iH~~yl~AGAd--iI~TnTy~as~~~l~~~-g~~~---~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~-~~ 127 (328)
.++++-+.--+.|-. .+++|+|.-.+...... ..+. +...+.++.++++|++. +.+ +.
T Consensus 68 ~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eL---------------Ga~~Vv 132 (384)
T PRK12677 68 IIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAEL---------------GAKTYV 132 (384)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHh---------------CCCEEE
Confidence 355655555578877 56788885322211111 1121 12233466666666654 223 33
Q ss_pred EEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh----cC--CCeEEEecCCCH-------HHHHHHHHH
Q 020275 128 VAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVE----SG--PDLLAFETIPNK-------LEAQALVEL 194 (328)
Q Consensus 128 VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~----~g--vD~i~~ET~~~~-------~E~~a~~~~ 194 (328)
|. .|.-| .+|.+ ..+.++..+.+.+-++.+.+ .| |. |++|..|.. .....++..
T Consensus 133 v~--~G~~g------~~~~~----~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ep~~~~~l~t~~~al~l 199 (384)
T PRK12677 133 MW--GGREG------AEYDA----AKDVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPNEPRGDILLPTVGHALAF 199 (384)
T ss_pred Ee--eCCCC------ccCcc----cCCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCCCCCCCeeeCCHHHHHHH
Confidence 32 23211 12322 23667777777766666543 33 54 677976541 222333444
Q ss_pred HHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 195 LEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 195 ~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+++.+ .|-.+.++++-.....-|+++.+.+........+..|=+|=
T Consensus 200 i~~lg--~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~~~kL~HvHlnD 245 (384)
T PRK12677 200 IATLE--HPEMVGLNPEVGHEQMAGLNFTHGIAQALWAGKLFHIDLNG 245 (384)
T ss_pred HHHhC--CCccEEEeeechHHHhcCCCHHHHHHHHHhCCcEEEEEecC
Confidence 44443 34334554444445578888888776543223556666664
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=85.95 E-value=22 Score=31.90 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=81.2
Q ss_pred HHHHHhcCCCeEEEec-CCC--------------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 166 LQVLVESGPDLLAFET-IPN--------------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 166 i~~l~~~gvD~i~~ET-~~~--------------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++.+.+.|+|.+-+-. .++ +.+++.+++.+++.+ ..+ +|.+.+..+... +.+.+.++.+.
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g--~~v--~~~~~~~~~~~~-~~~~~~~~~~~ 147 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG--YEV--AFGCEDASRTDP-EELLELAEALA 147 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT--SEE--EEEETTTGGSSH-HHHHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC--Cce--EeCccccccccH-HHHHHHHHHHH
Confidence 4556679999986664 444 667777888888775 444 676666554322 23445555555
Q ss_pred hcCCceEEEECC----CChhhhHHHHHHHHhhcC-CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 231 KSGKVNAVGINC----APPQFVENLICYFKELTK-KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 231 ~~~~~~~iGvNC----~~p~~~~~~l~~l~~~~~-~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
+ .+++.|.+.= ..|..+..+++.+++..+ .+|.+.... . ..-=...+...+++|+++
T Consensus 148 ~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hn-------------d----~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 148 E-AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHN-------------D----LGLAVANALAALEAGADR 209 (237)
T ss_dssp H-HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBB-------------T----TS-HHHHHHHHHHTT-SE
T ss_pred H-cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecC-------------C----ccchhHHHHHHHHcCCCE
Confidence 4 3677777653 359999999999998877 788876642 0 111122344567889988
Q ss_pred EeecC-----CCChHHHHHHHHHH
Q 020275 306 IGGCC-----RTTPSTIQAVSKVL 324 (328)
Q Consensus 306 iGGCC-----Gt~P~hI~al~~~l 324 (328)
|=++. +++-..++.+...|
T Consensus 210 id~t~~GlG~~~Gn~~le~lv~~L 233 (237)
T PF00682_consen 210 IDGTLGGLGERAGNAPLEELVAAL 233 (237)
T ss_dssp EEEBGGGGSSTTSB-BHHHHHHHH
T ss_pred EEccCccCCCCCCCccHHHHHHHH
Confidence 74432 34444455554444
No 102
>PLN02489 homocysteine S-methyltransferase
Probab=85.74 E-value=35 Score=32.82 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCC-----------HHHHHHH----HHHHHhcC-------------------
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPN-----------KLEAQAL----VELLEEEN------------------- 199 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~-----------~~E~~a~----~~~~~~~~------------------- 199 (328)
..+.+++.|+.- +++|+|+|.--|+.- .+|++.+ ++.+++..
T Consensus 53 ~Pe~V~~vH~~y----l~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 128 (335)
T PLN02489 53 SPHLIRKVHLDY----LEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGREL 128 (335)
T ss_pred CHHHHHHHHHHH----HHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 457777777754 458999887777632 2332222 33333210
Q ss_pred CCccEEEEEEecCCCCCC-CC----------CCHHHHHHHHH------hcCCceEEEECCC-ChhhhHHHHHHHHhhc-C
Q 020275 200 IQIPSWICFSSVDGENAP-SG----------ESFKECLDIIN------KSGKVNAVGINCA-PPQFVENLICYFKELT-K 260 (328)
Q Consensus 200 ~~~pv~is~~~~~~~~l~-~G----------~~~~~~~~~~~------~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~-~ 260 (328)
.+.|++|.-++-.-+.+. +| .+.+++.+... ...+++.|.+--. +...+..+++.++... +
T Consensus 129 ~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~ 208 (335)
T PLN02489 129 SYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIK 208 (335)
T ss_pred CCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCC
Confidence 135788888876555322 22 45665543321 1257999999876 4677777887777553 4
Q ss_pred CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhc
Q 020275 261 KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 261 ~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
.|+.+.-.. .+.. .+. .+.+.++..+.+.+ ..++..||==| +.|+++..+-+.+..
T Consensus 209 ~p~~iS~t~---~~~~---~l~-~G~~~~~~~~~~~~--~~~~~~iGiNC-~~p~~~~~~l~~l~~ 264 (335)
T PLN02489 209 IPAWISFNS---KDGV---NVV-SGDSLLECASIADS--CKKVVAVGINC-TPPRFIHGLILSIRK 264 (335)
T ss_pred CeEEEEEEe---CCCC---ccC-CCCcHHHHHHHHHh--cCCceEEEecC-CCHHHHHHHHHHHHh
Confidence 675443321 0110 011 11233344443321 13677899888 499999998877753
No 103
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.65 E-value=24 Score=32.85 Aligned_cols=163 Identities=24% Similarity=0.278 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHhccceeecCC-c----------CCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSS-Y----------QATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPG 120 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnT-y----------~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~ 120 (328)
++|...++-+.-+++|||+|.--= | |.+..+--..|++. .+..++.++++++.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~-------~~~lel~~~~r~~~--------- 92 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTL-------EDTLELVEEIRAKG--------- 92 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHhcC---------
Confidence 356788888888999999987431 2 22222222223332 45566777776542
Q ss_pred CCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q 020275 121 HNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI 200 (328)
Q Consensus 121 ~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~ 200 (328)
.+.++.+-+-.-|.- .|+ -..-++.+.+.|||.+++=-+|- +|...+...+++.+.
T Consensus 93 -~~~Pivlm~Y~Npi~-----------~~G-----------ie~F~~~~~~~GvdGlivpDLP~-ee~~~~~~~~~~~gi 148 (265)
T COG0159 93 -VKVPIVLMTYYNPIF-----------NYG-----------IEKFLRRAKEAGVDGLLVPDLPP-EESDELLKAAEKHGI 148 (265)
T ss_pred -CCCCEEEEEeccHHH-----------Hhh-----------HHHHHHHHHHcCCCEEEeCCCCh-HHHHHHHHHHHHcCC
Confidence 223444444333311 111 12234556679999999776664 566677777887763
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcC-C-ceEEEECCC-C---h--hhhHHHHHHHHhhcCCeEEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSG-K-VNAVGINCA-P---P--QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~-~-~~~iGvNC~-~---p--~~~~~~l~~l~~~~~~pl~~ 265 (328)
+ |+. |. .-++-.+-+..+.+.. + +-.++.+-+ . + ..+..+++.++++++.|+++
T Consensus 149 ~-~I~--lv--------aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 149 D-PIF--LV--------APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred c-EEE--Ee--------CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 2 222 21 1111123333332211 2 223333332 1 2 23677888888888888755
No 104
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.59 E-value=8 Score=32.66 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHH-----HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCC
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQ-----ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGK 234 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~-----a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 234 (328)
+.+.++++.+.+.|+|++.+++...-..-. ..+..+++.. +.|+++.+.+.+... .+..++..+.. .+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~a~~~~~-~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDAAA-----AVDIAAAAARA-AG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc-CCcEEEEEccCCchh-----hhhHHHHHHHH-cC
Confidence 345667788888999999888754221111 1122333322 589999997644321 11122234443 47
Q ss_pred ceEEEECCCCh---hhhHHHHHHHHhhc-CCeEEEEeCC
Q 020275 235 VNAVGINCAPP---QFVENLICYFKELT-KKAIVVYPNS 269 (328)
Q Consensus 235 ~~~iGvNC~~p---~~~~~~l~~l~~~~-~~pl~~ypN~ 269 (328)
+++|-+|+..+ ......++.+++.. +.++++.-+.
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 78888888764 33566777777665 5676665543
No 105
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.41 E-value=43 Score=33.61 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCeEEE-ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 163 RRRLQVLVESGPDLLAF-ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~-ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
+.-++...+.|+|.|-+ -.+++...++.+++.+++.+ ..+-++++.....+ -+-+-+.+.++.+.+ .+++.|.+-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~-~Gad~I~i~ 174 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAG--GHAQVAISYTTSPV-HTIDYFVKLAKEMQE-MGADSICIK 174 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CeEEEEEEeecCCC-CCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 34455667889998744 45567777888889998876 44444443322221 111223344444443 467766664
Q ss_pred CC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 242 CA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 242 C~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
=+ .|..+..+++.+++..+.||.+.-.
T Consensus 175 Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~H 205 (448)
T PRK12331 175 DMAGILTPYVAYELVKRIKEAVTVPLEVHTH 205 (448)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 43 4999999999999887788877553
No 106
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=85.31 E-value=27 Score=31.19 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCeEEEe-cC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFE-TI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E-T~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
...++.+.++|+|.|++- |. -+..++...++++|+.. ++|+|+ |- .+. .. +...++. -..---+
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil-fp--~~~-----~~---i~~~aD~--~~~~sll 79 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL-FP--GNV-----NG---LSRYADA--VFFMSLL 79 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE-EC--CCc-----cc---cCcCCCE--EEEEEee
Confidence 446667888999999997 42 35577777888898853 799998 41 111 11 1111111 1122346
Q ss_pred CCCChhhhHHH-HHHH---Hhhc-----CCeEEEEeCCCCccCCccccccCC----CCCChhHHHHHHHHHHHcCCeEE-
Q 020275 241 NCAPPQFVENL-ICYF---KELT-----KKAIVVYPNSGEVWDGRAKKWLPS----KCLGDGKFESFATRWRDSGAKLI- 306 (328)
Q Consensus 241 NC~~p~~~~~~-l~~l---~~~~-----~~pl~~ypN~g~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~~ii- 306 (328)
|-..|+++... .+.+ ++.. ...+++-|.+ +..|+.. ...++++-+.++......|+++|
T Consensus 80 ns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~-------~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~ 152 (205)
T TIGR01769 80 NSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGG-------AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVY 152 (205)
T ss_pred cCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCC-------ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 76667553332 2221 2221 1345555543 1223221 11467777777766667787542
Q ss_pred -eecC--C--CChHHHHHHHHHHh
Q 020275 307 -GGCC--R--TTPSTIQAVSKVLK 325 (328)
Q Consensus 307 -GGCC--G--t~P~hI~al~~~l~ 325 (328)
=-|- + .+++.|+++++.++
T Consensus 153 Le~~sGa~~~v~~e~i~~Vk~~~~ 176 (205)
T TIGR01769 153 LEAGSGASYPVNPETISLVKKASG 176 (205)
T ss_pred EEcCCCCCCCCCHHHHHHHHHhhC
Confidence 2222 4 56999999988763
No 107
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=85.13 E-value=4.8 Score=42.15 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHH---hcCCCccEEEEEEecC
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLE---EENIQIPSWICFSSVD 212 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~---~~~~~~pv~is~~~~~ 212 (328)
--+|+..|.++|+|++- =|+|+..|++++-..-+ +.+.+.|.+.-+.++.
T Consensus 112 tv~Qi~~l~~aGceiVR-vtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 112 TVDQVMRIADKGADIVR-ITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP 164 (733)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH
Confidence 35699999999999987 48999999887754333 3456799998887754
No 108
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=85.12 E-value=9.5 Score=34.11 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCC------CCCCCHHHHHHHHHhcCCce
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENA------PSGESFKECLDIINKSGKVN 236 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~~~~~~~~~~~~~ 236 (328)
.++++.+.+.|+|.+++-+.. +.+...+.+++++.+ ..++++|+.++..... ....++.+.+..+.+ .++.
T Consensus 85 ~e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~ 161 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVK 161 (234)
T ss_pred HHHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCC
Confidence 446677777899999876543 344455556666665 3588888877553211 124456677776655 3556
Q ss_pred EEEECCCCh-----hhhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 237 AVGINCAPP-----QFVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 237 ~iGvNC~~p-----~~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
.+-+.-... ..-..+++++.+..+.|+++ |+|
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~--~GG 198 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAATGIPVIA--SGG 198 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEE--ecC
Confidence 555543211 12246777777777778654 544
No 109
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.76 E-value=30 Score=31.30 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH------HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK------LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~------~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
.+.++. .+.++.|.+.|||.|=+-..... .+...+++.+++...+.++. .+. . .| .+.+
T Consensus 16 ~s~e~~----~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~-~l~-~------~~---~~~i 80 (265)
T cd03174 16 FSTEDK----LEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQ-ALV-R------NR---EKGI 80 (265)
T ss_pred CCHHHH----HHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEE-EEc-c------Cc---hhhH
Confidence 466665 44566677889999876655544 44455666666543223332 222 1 12 3344
Q ss_pred HHHHhcCCceEEEECCCCh----------------hhhHHHHHHHHhhcCCeEEEEe-CCCCccCCccccccCCCCCChh
Q 020275 227 DIINKSGKVNAVGINCAPP----------------QFVENLICYFKELTKKAIVVYP-NSGEVWDGRAKKWLPSKCLGDG 289 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~~p----------------~~~~~~l~~l~~~~~~pl~~yp-N~g~~~d~~~~~~~~~~~~~~~ 289 (328)
+.+.+ .++..|.+-+... +.+...++.+++. ...+.+.. ... .. ..+++
T Consensus 81 ~~a~~-~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~----------~~--~~~~~ 146 (265)
T cd03174 81 ERALE-AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAF----------GC--KTDPE 146 (265)
T ss_pred HHHHh-CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeec----------CC--CCCHH
Confidence 44444 3456666655422 3333344444332 33444333 111 00 13688
Q ss_pred HHHHHHHHHHHcCCeEEeecCC----CChHHHHHHHHHHhc
Q 020275 290 KFESFATRWRDSGAKLIGGCCR----TTPSTIQAVSKVLKE 326 (328)
Q Consensus 290 ~~~~~~~~~~~~G~~iiGGCCG----t~P~hI~al~~~l~~ 326 (328)
++.+.++.+.+.|+..|. .|- .+|+.++.+-+.++.
T Consensus 147 ~l~~~~~~~~~~g~~~i~-l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 147 YVLEVAKALEEAGADEIS-LKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred HHHHHHHHHHHcCCCEEE-echhcCCcCHHHHHHHHHHHHH
Confidence 899999999999997765 222 489998888776653
No 110
>PLN02591 tryptophan synthase
Probab=84.73 E-value=32 Score=31.64 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCce-EEEEC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVN-AVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-~iGvN 241 (328)
.+-++.+.++|+|.+++=-+|- +|.....+.+++.+ +..+.-++. .++-+..-.......+.. .|+.+
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~-ee~~~~~~~~~~~g--l~~I~lv~P--------tt~~~ri~~ia~~~~gFIY~Vs~~ 164 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPL-EETEALRAEAAKNG--IELVLLTTP--------TTPTERMKAIAEASEGFVYLVSST 164 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCH-HHHHHHHHHHHHcC--CeEEEEeCC--------CCCHHHHHHHHHhCCCcEEEeeCC
Confidence 4456777889999999888874 88899999999886 444433321 122222222222222333 33444
Q ss_pred CC-----C-hhhhHHHHHHHHhhcCCeEEE
Q 020275 242 CA-----P-PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 242 C~-----~-p~~~~~~l~~l~~~~~~pl~~ 265 (328)
-+ . |..+...++.+++.++.|+++
T Consensus 165 GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 165 GVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 32 1 667888889999888889876
No 111
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=84.71 E-value=21 Score=34.24 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCC----CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCC
Q 020275 159 KDFHRRRLQVLVESGPDLLAFETIP----NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGK 234 (328)
Q Consensus 159 ~~~h~~qi~~l~~~gvD~i~~ET~~----~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 234 (328)
...-+..++...+.|+.+.+ -+.. +.+ ...-.+.+|+...+.|++.++-+..... .+-..+..+++.+. ..
T Consensus 69 ~~in~~La~~a~~~g~~~~~-Gs~~~~~~~~~-~~~~~~~vr~~~~~~p~i~nl~~~~~~~-~~~~~~~~~i~~i~--ad 143 (333)
T TIGR02151 69 GKINRNLARAARELGIPMGV-GSQRAALKDPE-TADTFEVVREEAPNGPLIANIGAPQLVE-GGPEEAQEAIDMIE--AD 143 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEE-cCchhhccChh-hHhHHHHHHHhCCCCcEEeecCchhhcc-ccHHHHHHHHHHhc--CC
Confidence 34456667777778876653 2222 222 2323366666445799999886532211 01122445555553 35
Q ss_pred ceEEEECCCC----hh---hhH---HHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 235 VNAVGINCAP----PQ---FVE---NLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 235 ~~~iGvNC~~----p~---~~~---~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
...+++||.+ |+ ... ..++.+++..+.|++++-++. . . ..+.++.+.+.|+.
T Consensus 144 al~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~------------g--~----~~~~a~~L~~aGvd 205 (333)
T TIGR02151 144 ALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGF------------G--I----SKEVAKLLADAGVS 205 (333)
T ss_pred CEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC------------C--C----CHHHHHHHHHcCCC
Confidence 6778888853 21 233 567777777788999975521 0 1 23566777888974
Q ss_pred E--EeecCCCC
Q 020275 305 L--IGGCCRTT 313 (328)
Q Consensus 305 i--iGGCCGt~ 313 (328)
. |+|-.||+
T Consensus 206 ~I~Vsg~gGt~ 216 (333)
T TIGR02151 206 AIDVAGAGGTS 216 (333)
T ss_pred EEEECCCCCCc
Confidence 4 66666665
No 112
>PRK15452 putative protease; Provisional
Probab=84.70 E-value=33 Score=34.40 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCeEEEe----------cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh-
Q 020275 163 RRRLQVLVESGPDLLAFE----------TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK- 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E----------T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~- 231 (328)
.+++++.++.|+|.+.+. .-.+.+|++.+++.+++.+ +.+++++. .+.....+......+..
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~kvyvt~n-----~i~~e~el~~~~~~l~~l 85 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KKFYVVVN-----IAPHNAKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CEEEEEec-----CcCCHHHHHHHHHHHHHH
Confidence 457888889999999983 2335688999999998875 88888764 22233334444443332
Q ss_pred -cCCceEEEECCC
Q 020275 232 -SGKVNAVGINCA 243 (328)
Q Consensus 232 -~~~~~~iGvNC~ 243 (328)
..++++|-|.-.
T Consensus 86 ~~~gvDgvIV~d~ 98 (443)
T PRK15452 86 IAMKPDALIMSDP 98 (443)
T ss_pred HhCCCCEEEEcCH
Confidence 247888887653
No 113
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=84.64 E-value=22 Score=34.86 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
.+.+.+++.-+++ ..+.+.|.||+|+-........--+. +++-+.+++..+++++-..+ -+.+. | .
T Consensus 69 ~d~~~~~~~l~~~-GL~v~~i~p~~f~~~~~~~GSLt~pD---~~vR~~AIe~~k~~idiA~e--------LGa~~-I-~ 134 (378)
T TIGR02635 69 EDYEELARYAEEL-GLKIGAINPNLFQDDDYKFGSLTHPD---KRIRRKAIDHLLECVDIAKK--------TGSKD-I-S 134 (378)
T ss_pred cCHHHHHHHHHHc-CCceeeeeCCccCCcccCCCCCCCCC---HHHHHHHHHHHHHHHHHHHH--------hCCCe-E-E
Confidence 5555565552222 23456678887854322211111111 23445566666655543221 12222 2 2
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh---cCCCeEE---------Eec-CCCHHHHHHHHHHHHh
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVE---SGPDLLA---------FET-IPNKLEAQALVELLEE 197 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~---~gvD~i~---------~ET-~~~~~E~~a~~~~~~~ 197 (328)
. ++.||.+|.|. .+..+..+.+.+-++.+.+ .++++++ ++| +++..+..++ +++
T Consensus 135 i------W~~DG~~~~g~----~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l---~~~ 201 (378)
T TIGR02635 135 L------WLADGTNYPGQ----DDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEPAFYHTDIPDWGTAYAL---SEK 201 (378)
T ss_pred E------ecCCcCcCCcc----cCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCceeeecCCcHHHHHHH---HHh
Confidence 2 22355566552 3555555555555555543 3555544 123 4444444444 444
Q ss_pred cCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC------------ChhhhHHHHHHHHhh
Q 020275 198 ENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA------------PPQFVENLICYFKEL 258 (328)
Q Consensus 198 ~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~------------~p~~~~~~l~~l~~~ 258 (328)
.+ -|+.+.+ |-++..-|+++++.+..+.....+..|=+|=. .|..+..+++++.+.
T Consensus 202 lg--~~~~v~l---D~GH~~~~Enia~~~a~l~~~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~ 269 (378)
T TIGR02635 202 LG--ERALVLV---DTGHHAQGTNIEFIVATLLDEKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRA 269 (378)
T ss_pred hC--CCceEEe---ecCccCCCCCHHHHHHHHhhCCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhc
Confidence 43 4555444 44555679999997766653333444555531 244556666666543
No 114
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=84.57 E-value=26 Score=32.97 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCeEEEec-C--------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 162 HRRRLQVLVESGPDLLAFET-I--------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
|.+.++.+.+.|+|.|=+-. - .+.+.+..+++++++.- ++|+++-++. +-+.+.+.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-------~~~~~~~~a 186 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-------NITDIREIA 186 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC-------CchhHHHHH
Confidence 45566666667899875531 1 23456777888888653 6999988753 122456677
Q ss_pred HHHHhcCCceEE-EECCC
Q 020275 227 DIINKSGKVNAV-GINCA 243 (328)
Q Consensus 227 ~~~~~~~~~~~i-GvNC~ 243 (328)
+.+.+ .++++| .+|..
T Consensus 187 ~~~~~-~Gadgi~~~Nt~ 203 (299)
T cd02940 187 RAAKE-GGADGVSAINTV 203 (299)
T ss_pred HHHHH-cCCCEEEEeccc
Confidence 66654 366654 44543
No 115
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.43 E-value=23 Score=32.39 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRG-LSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g-~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
+|..|.+.-++|.+||+--|.---.+++. .... ++.++. ..=++.|++++.+ ...+|.+
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~---~~~~l~~~ee~----~~kI~Aa~~a~~~-------------~~~~I~A 142 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGH---GGKQLVSPEEM----VAKIRAAVDARRD-------------PDFVIIA 142 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTT---STT-B--HHHH----HHHHHHHHHHHSS-------------TTSEEEE
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCC---CCCceeCHHHH----HHHHHHHHHhccC-------------CeEEEEE
Confidence 38899999999999998755543333331 1111 232222 2224445555432 2355555
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
-.--+. ...+-.+.--+|.++..++|+|.++++.+.+.+|++.+++.+ +.|+.+..
T Consensus 143 RTDa~~-----------------~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~v~~ 198 (238)
T PF13714_consen 143 RTDAFL-----------------RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV-----DGPLNVNP 198 (238)
T ss_dssp EECHHC-----------------HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH-----SSEEEEET
T ss_pred eccccc-----------------cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCCEEEEc
Confidence 332211 023333444678999999999999999999999988777766 27865544
No 116
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=84.41 E-value=28 Score=33.59 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=75.1
Q ss_pred HHHHhcCCCeEEEecC--CC-H--------HHHHHHHHHHHhcCCCccEEEEEEe-cCCCCCCCC--------CCHHHHH
Q 020275 167 QVLVESGPDLLAFETI--PN-K--------LEAQALVELLEEENIQIPSWICFSS-VDGENAPSG--------ESFKECL 226 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~--~~-~--------~E~~a~~~~~~~~~~~~pv~is~~~-~~~~~l~~G--------~~~~~~~ 226 (328)
+.+++.|+|.+-+=.+ |+ . ..+..+.+.+++. ++|+++-+-. .......+. +.+..++
T Consensus 113 e~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~--giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~ 190 (340)
T PRK12858 113 RRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRAN--DIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTM 190 (340)
T ss_pred HHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHc--CCceEEEEeccCCCccccccccccccCHHHHHHHH
Confidence 3356678888755444 33 1 1233444555555 5999997533 333333233 2344555
Q ss_pred HHHHh-cCCceEEEECCCC-h---------------hhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChh
Q 020275 227 DIINK-SGKVNAVGINCAP-P---------------QFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDG 289 (328)
Q Consensus 227 ~~~~~-~~~~~~iGvNC~~-p---------------~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~ 289 (328)
+...+ ..+++.+=+.-.. + +.....++++...++.|+++-. +| .+.+
T Consensus 191 r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvls-gG---------------~~~~ 254 (340)
T PRK12858 191 EEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLS-AG---------------VSPE 254 (340)
T ss_pred HHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEEC-CC---------------CCHH
Confidence 55542 3577877776642 2 1122455666666677876622 22 2456
Q ss_pred HHHHHHHHHHHcCCeEEeecCCC
Q 020275 290 KFESFATRWRDSGAKLIGGCCRT 312 (328)
Q Consensus 290 ~~~~~~~~~~~~G~~iiGGCCGt 312 (328)
.|.+.++...+.|+++-|=+||=
T Consensus 255 ~f~~~l~~A~~aGa~f~Gvl~GR 277 (340)
T PRK12858 255 LFRRTLEFACEAGADFSGVLCGR 277 (340)
T ss_pred HHHHHHHHHHHcCCCccchhhhH
Confidence 78888888889999988988883
No 117
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=84.28 E-value=47 Score=33.82 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 163 RRRLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
+.-++...+.|+|+| +|-.++++..++.+++++++.+...-..|+++..... +-+-+.+.+..+.+ .+++.|.|-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~---t~e~~~~~a~~l~~-~Gad~I~Ik 175 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH---TVEGFVEQAKRLLD-MGADSICIK 175 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC---CHHHHHHHHHHHHH-cCCCEEEeC
Confidence 345566677899998 6668888899999999999887333245566543211 12223344444443 466766665
Q ss_pred CC----ChhhhHHHHHHHHhhc--CCeEEEEeC
Q 020275 242 CA----PPQFVENLICYFKELT--KKAIVVYPN 268 (328)
Q Consensus 242 C~----~p~~~~~~l~~l~~~~--~~pl~~ypN 268 (328)
=+ .|..+..+++.+++.. +.||.+.-.
T Consensus 176 DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 176 DMAALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 43 4999999999999887 578877654
No 118
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.23 E-value=9.6 Score=35.70 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+|+...+++|+|+|.+.+| ++++++.+++.+++.+.+..+.+-.+ .|-+++.+.++.. .+++.|.+-.
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ga 260 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEVS--------GGITPENIEEYAK--LDVDVISLGA 260 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 4566667899999999998 68899999998876542222444443 4677776666554 4788887765
No 119
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=84.11 E-value=40 Score=32.14 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe--
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA-- 130 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG-- 130 (328)
.+.+.+.-++-++.|-.-|..+---..........++ -..++.+|++..++.. .+.+|..
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~---~~g~v~~air~iK~~~---------------pdl~vi~DV 121 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWD---DNGLLARMVRTIKAAV---------------PEMMVIPDI 121 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccC---CCChHHHHHHHHHHHC---------------CCeEEEeee
Confidence 4667777788999998866543321111111111122 1357788887777543 2344544
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC-CccEEEEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI-QIPSWICFS 209 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~-~~pv~is~~ 209 (328)
|+-||-..-++|--..| .++-++-.+...+|+-.++++|+|++.==.|-+ -.+.++.+++.+.+. +.|++ |-+
T Consensus 122 cLc~YT~hGHcGil~~g----~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMD-GrV~aIR~aLd~~g~~~v~Im-SYs 195 (322)
T PRK13384 122 CFCEYTDHGHCGVLHND----EVDNDATVENLVKQSVTAAKAGADMLAPSAMMD-GQVKAIRQGLDAAGFEHVAIL-AHS 195 (322)
T ss_pred ecccCCCCCceeeccCC----cCccHHHHHHHHHHHHHHHHcCCCeEecccccc-cHHHHHHHHHHHCCCCCCcee-ehh
Confidence 45565544333221112 245566677778888889999999998655555 356777888877653 34443 433
Q ss_pred ecC------------------CC--CCCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEe
Q 020275 210 SVD------------------GE--NAPSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 210 ~~~------------------~~--~l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~yp 267 (328)
.+= +. -.+|-..-.+|++.+. -..+.+.+.|-=..| .+.+++.+++.++.|+.+|-
T Consensus 196 aKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaaYq 273 (322)
T PRK13384 196 AKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTP--YLDVLSRLRQETHLPLAAYQ 273 (322)
T ss_pred HhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCch--HHHHHHHHHhccCCCEEEEE
Confidence 210 10 0112223345554432 124788888876543 45777888888889999999
Q ss_pred CCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 268 NSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 268 N~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
-+|+- .-.....|+.. ...+.|...-+..+|+.+|
T Consensus 274 VSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 274 VGGEYAMIKFAALAGALDE----RAVVTETLGGLKRAGADLI 311 (322)
T ss_pred chHHHHHHHHHHHcCCccH----HHHHHHHHHHHHHcCCCEE
Confidence 99962 12223346432 3347778888899999876
No 120
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=84.10 E-value=22 Score=34.46 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 161 FHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.-..|+..|.++|+|++- =|+|+.++++++-+..+.. +.|++.-+.|+. .-|+..+. .+++.+=|
T Consensus 43 atv~Qi~~L~~aGceiVR-vav~~~~~a~al~~I~~~~--~iPlvADIHFd~----------~lAl~a~~--~G~~~iRI 107 (360)
T PRK00366 43 ATVAQIKRLARAGCEIVR-VAVPDMEAAAALPEIKKQL--PVPLVADIHFDY----------RLALAAAE--AGADALRI 107 (360)
T ss_pred HHHHHHHHHHHcCCCEEE-EccCCHHHHHhHHHHHHcC--CCCEEEecCCCH----------HHHHHHHH--hCCCEEEE
Confidence 346699999999999987 4799999888777655544 699998887732 23445454 36788888
Q ss_pred CCCC----hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHH
Q 020275 241 NCAP----PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRW 298 (328)
Q Consensus 241 NC~~----p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
|=.. .+.+..+++..++. ..|+-+=-|+|.+...-...| . ..+++.+.+.+.+.
T Consensus 108 NPGNig~~~~~v~~vv~~ak~~-~ipIRIGvN~GSL~~~~~~~y--g-~~t~eamveSAl~~ 165 (360)
T PRK00366 108 NPGNIGKRDERVREVVEAAKDY-GIPIRIGVNAGSLEKDLLEKY--G-EPTPEALVESALRH 165 (360)
T ss_pred CCCCCCchHHHHHHHHHHHHHC-CCCEEEecCCccChHHHHHHc--C-CCCHHHHHHHHHHH
Confidence 8753 45666666666543 668777778885421111111 1 12466676655443
No 121
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=84.04 E-value=18 Score=34.33 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=76.5
Q ss_pred cCCChHHH-----------HHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 020275 49 LIKQPHLV-----------KRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKK 117 (328)
Q Consensus 49 ll~~Pe~V-----------~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~ 117 (328)
+.++||.| .+..+.++++|+|+|.... ++..- ++++..+++..-..+-..+++.+.
T Consensus 166 ~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d--~~~~~-----isp~~f~e~~~P~~k~i~~~i~~~------ 232 (343)
T PF01208_consen 166 LYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD--SSGSL-----ISPEMFEEFILPYLKKIIDAIKEA------ 232 (343)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE--TTGGG-----S-HHHHHHHTHHHHHHHHHHHHHH------
T ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--cccCC-----CCHHHHHHHHHHHHHHHHHHHHHh------
Confidence 45788753 3456778899999998776 33222 455666666555444444443332
Q ss_pred CCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHh
Q 020275 118 VPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEE 197 (328)
Q Consensus 118 ~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~ 197 (328)
+....+.=++|-. ...++.+.+.|+|++-++.-.++.|++ ++
T Consensus 233 -----g~~~~~lH~cG~~---------------------------~~~~~~l~~~g~d~~~~~~~~~~~~~~------~~ 274 (343)
T PF01208_consen 233 -----GKDPVILHICGNT---------------------------TPILDDLADLGADVLSVDEKVDLAEAK------RK 274 (343)
T ss_dssp -----ETE-EEEEETTHG----------------------------GGHHHHHTSS-SEEEE-TTS-HHHHH------HH
T ss_pred -----CCCceEEEECCch---------------------------HHHHHHHHhcCCCEEEEcCCCCHHHHH------HH
Confidence 1113344444332 235667778999999998777775533 23
Q ss_pred cCCCccEEEEEEecCCCCCCCCC--CHHHHHH-HHHh---cCCceEEEECCC-----ChhhhHHHHHHHHh
Q 020275 198 ENIQIPSWICFSSVDGENAPSGE--SFKECLD-IINK---SGKVNAVGINCA-----PPQFVENLICYFKE 257 (328)
Q Consensus 198 ~~~~~pv~is~~~~~~~~l~~G~--~~~~~~~-~~~~---~~~~~~iGvNC~-----~p~~~~~~l~~l~~ 257 (328)
.+.+..++=. ++....|. |+ .+.+.+. .+++ ..+-..++..|. +++.+..+++..++
T Consensus 275 ~~~~~~l~Gn--i~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 275 LGDKIVLMGN--IDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp HTTSSEEEEE--B-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred hCCCeEEECC--CCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 4423333322 33323344 54 2333333 2331 234456788894 24666666666543
No 122
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=83.99 E-value=15 Score=37.35 Aligned_cols=65 Identities=12% Similarity=0.313 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCeEEEecCC-CHHHHHHHHHHHHhcCCCccEEEE-EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIP-NKLEAQALVELLEEENIQIPSWIC-FSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.++++.|+++|+|+|.+-+-. +-......++.+|+.-.+.++++. + .+.+++...++ .++++|-+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-----------~t~e~a~~a~~--aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-----------VTMYQAQNLIQ--AGVDGLRV 316 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-----------CCHHHHHHHHH--cCcCEEEE
Confidence 679999999999999998732 222333556667764225677642 2 34567776665 36777744
No 123
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=83.71 E-value=45 Score=32.49 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=58.8
Q ss_pred CceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE-EEecC------CCHHHHHHHHHHHH
Q 020275 124 NRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLL-AFETI------PNKLEAQALVELLE 196 (328)
Q Consensus 124 ~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i-~~ET~------~~~~E~~a~~~~~~ 196 (328)
++.++..-+=|.| ++.++ |.+++..++.+|||+| --|.+ |--+-++++.++++
T Consensus 125 ~rPl~~tiiKP~G----------------L~~~~----~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~ 184 (364)
T cd08210 125 ERPLLCSALKPQG----------------LSAAE----LAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVA 184 (364)
T ss_pred CCceEEEEecccc----------------CCHHH----HHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHH
Confidence 4566777776643 34444 4667788888999998 22322 22233445555554
Q ss_pred h----cCCCccEEEEEEecCCCCCCCCCCHHHHHHHH---HhcCCceEEEECCCChhhhHHHHHHHHhhcC-CeEEEEeC
Q 020275 197 E----ENIQIPSWICFSSVDGENAPSGESFKECLDII---NKSGKVNAVGINCAPPQFVENLICYFKELTK-KAIVVYPN 268 (328)
Q Consensus 197 ~----~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~-~pl~~ypN 268 (328)
+ ++..+++.+.++ +. ..++++.. .+ .+..++.+|-... -...+..+++... .||..+|+
T Consensus 185 ~a~~eTG~~~~y~~Nit---------a~-~~em~~ra~~a~~-~Ga~~vMv~~~~~--G~~~~~~l~~~~~~l~i~aHra 251 (364)
T cd08210 185 EANAETGGRTLYAPNVT---------GP-PTQLLERARFAKE-AGAGGVLIAPGLT--GLDTFRELAEDFDFLPILAHPA 251 (364)
T ss_pred HHHhhcCCcceEEEecC---------CC-HHHHHHHHHHHHH-cCCCEEEeecccc--hHHHHHHHHhcCCCcEEEEccc
Confidence 3 444567776664 22 23554433 22 4666777776431 1123333333344 55555554
No 124
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=83.47 E-value=27 Score=33.79 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHH-HHhcCCCccEEEEEEecCCCCC-C-C--C----CCHHHHHHHHHhcCC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVEL-LEEENIQIPSWICFSSVDGENA-P-S--G----ESFKECLDIINKSGK 234 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~-~~~~~~~~pv~is~~~~~~~~l-~-~--G----~~~~~~~~~~~~~~~ 234 (328)
..++.+.++|+|.++.= +.+++. ......+.|+++-++- ...+ . + - .++++|++ .+
T Consensus 95 ~~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~--~t~l~~~~~~~~~l~~sVedAlr-----LG 159 (348)
T PRK09250 95 NIVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNH--NELLSYPNTYDQALTASVEDALR-----LG 159 (348)
T ss_pred HHHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCC--CCCCCCCCCCcccceecHHHHHH-----CC
Confidence 36677778899999843 566655 3444336898888763 2222 1 1 1 12333332 36
Q ss_pred ceEEEECCC-ChhhhHHHHHHHHhh------cCCeEE--EEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 235 VNAVGINCA-PPQFVENLICYFKEL------TKKAIV--VYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 235 ~~~iGvNC~-~p~~~~~~l~~l~~~------~~~pl~--~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
.+|||+.+- ..+.-...|+.+.+. ...|++ +||-++.+.+.. ++ ..+++.++..++-..++||.|
T Consensus 160 AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~--d~----~~~~d~Ia~AaRiaaELGADI 233 (348)
T PRK09250 160 AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDG--DY----HTAADLTGQANHLAATIGADI 233 (348)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcc--cc----cccHHHHHHHHHHHHHHcCCE
Confidence 678888774 233333444443332 245765 588765432210 01 124666777777789999988
Q ss_pred EeecCCCChHH
Q 020275 306 IGGCCRTTPST 316 (328)
Q Consensus 306 iGGCCGt~P~h 316 (328)
|===.-++++.
T Consensus 234 VKv~yp~~~~~ 244 (348)
T PRK09250 234 IKQKLPTNNGG 244 (348)
T ss_pred EEecCCCChhh
Confidence 86443333333
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.40 E-value=18 Score=32.33 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCC------CCCCCCCHHHHHHHHHhcCCce
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGE------NAPSGESFKECLDIINKSGKVN 236 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~------~l~~G~~~~~~~~~~~~~~~~~ 236 (328)
.++++.+.+.|+|.+++-|..- .+...+.+++++.+ ..++++|+.++... +-....++.+.++.+.+ .++.
T Consensus 84 ~ed~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~g~~ 160 (230)
T TIGR00007 84 LEDVEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYG-PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE-LGLE 160 (230)
T ss_pred HHHHHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhC-CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh-CCCC
Confidence 4567777779999888765332 23344555666665 35678888775431 11123455667766654 3445
Q ss_pred EEE---ECCCCh--hhhHHHHHHHHhhcCCeEEE
Q 020275 237 AVG---INCAPP--QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 237 ~iG---vNC~~p--~~~~~~l~~l~~~~~~pl~~ 265 (328)
.+- ++.... ..=..+++++.+..+.|+++
T Consensus 161 ~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia 194 (230)
T TIGR00007 161 GIIYTDISRDGTLSGPNFELTKELVKAVNVPVIA 194 (230)
T ss_pred EEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 443 333211 11245667776666677554
No 126
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.28 E-value=39 Score=31.43 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
+++.+.++.+.+.|+|.|-+- |. -++.++...++.+++.-.+ +-++|.+-++ .|..+..++..+..
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd----~GlA~AN~laA~~a 217 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDT----RGQALANILAALEA 217 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCC----CChHHHHHHHHHHh
Confidence 345666677777899988665 44 4567888888888865212 5567766444 36666667766654
No 127
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.21 E-value=23 Score=33.87 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=38.4
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC----h--------hhhHHHHHHHHhhcCCeEEEEe
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP----P--------QFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~----p--------~~~~~~l~~l~~~~~~pl~~yp 267 (328)
+.|+++|+... +-+.+.+++..+.+ .++++|=+|++. | +.+..+++.+++..+.|++++-
T Consensus 99 ~~pvi~si~g~------~~~~~~~~a~~~~~-~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl 170 (325)
T cd04739 99 SIPVIASLNGV------SAGGWVDYARQIEE-AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL 170 (325)
T ss_pred CCeEEEEeCCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc
Confidence 58999998310 11223456666654 468898888864 2 1245677778777788998864
No 128
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.21 E-value=22 Score=32.31 Aligned_cols=97 Identities=6% Similarity=-0.011 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCeEEEecC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC------CCCCCCHHHHHHHHHhcCC
Q 020275 163 RRRLQVLVESGPDLLAFETI--PNKLEAQALVELLEEENIQIPSWICFSSVDGEN------APSGESFKECLDIINKSGK 234 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~------l~~G~~~~~~~~~~~~~~~ 234 (328)
.++++.+...|+|-+++-|. .+++ .+-++.++++ +. +++|+...++.- -.++.++.+.+..+.+ .+
T Consensus 88 ~e~v~~~l~~Ga~kvvigt~a~~~~~---~l~~~~~~fg-~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g 161 (234)
T PRK13587 88 KSQIMDYFAAGINYCIVGTKGIQDTD---WLKEMAHTFP-GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IP 161 (234)
T ss_pred HHHHHHHHHCCCCEEEECchHhcCHH---HHHHHHHHcC-CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cC
Confidence 45677777899999988764 3443 3444555555 34 888998765521 1356678888888765 46
Q ss_pred ceEEEECCCChhh-----hHHHHHHHHhhcCCeEEE
Q 020275 235 VNAVGINCAPPQF-----VENLICYFKELTKKAIVV 265 (328)
Q Consensus 235 ~~~iGvNC~~p~~-----~~~~l~~l~~~~~~pl~~ 265 (328)
+..+-++..+.+- =..+++++.+.++.|+++
T Consensus 162 ~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~ 197 (234)
T PRK13587 162 LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIA 197 (234)
T ss_pred CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEE
Confidence 6778888875332 245777777766778766
No 129
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=83.18 E-value=5.7 Score=40.67 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHH---HhcCCCccEEEEEEec
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELL---EEENIQIPSWICFSSV 211 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~---~~~~~~~pv~is~~~~ 211 (328)
-.|+..|.++|+|++- =|+|+..+++++-+.. ++.+.+.|++.-+.|+
T Consensus 48 v~Qi~~L~~aGceiVR-vtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 98 (606)
T PRK00694 48 VRQICALQEWGCDIVR-VTVQGLKEAQACEHIKERLIQQGISIPLVADIHFF 98 (606)
T ss_pred HHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC
Confidence 5699999999999987 4789999988775443 3346679999888764
No 130
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.10 E-value=37 Score=31.08 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhh-HHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPG-FLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~-l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
+++-|+ ..+++|.+.|..... +|... ....+.+.+++-+.....++.|+ +. + ..|.
T Consensus 71 ~~~~v~----~a~~~g~~~i~i~~~-~s~~~~~~~~~~~~~~~~~~~~~~i~~a~---~~------------G--~~v~- 127 (259)
T cd07939 71 VKEDIE----AALRCGVTAVHISIP-VSDIHLAHKLGKDRAWVLDQLRRLVGRAK---DR------------G--LFVS- 127 (259)
T ss_pred CHHHHH----HHHhCCcCEEEEEEe-cCHHHHHHHhCCCHHHHHHHHHHHHHHHH---HC------------C--CeEE-
Confidence 445453 356789998877653 34443 34457775544444444444444 21 2 2333
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cCC--CHHHHHHHHHHHHhcCCCccEEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TIP--NKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~~--~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
+++ ++.+.+ +. +++.+.++.+.+.|+|.|.+= |+. .+.++...+..+++. .|+-+.
T Consensus 128 -~~~---------~~~~~~----~~----~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~ 186 (259)
T cd07939 128 -VGA---------EDASRA----DP----DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA---TDLPLE 186 (259)
T ss_pred -Eee---------ccCCCC----CH----HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCeEE
Confidence 222 112222 33 445677777888899987553 443 567888888888865 334456
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHh
Q 020275 208 FSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 208 ~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
|.+=++ .|..+..++..+..
T Consensus 187 ~H~Hn~----~Gla~An~laAi~a 206 (259)
T cd07939 187 FHAHND----LGLATANTLAAVRA 206 (259)
T ss_pred EEecCC----CChHHHHHHHHHHh
Confidence 765433 46666777776654
No 131
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=83.08 E-value=37 Score=30.99 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCC--CeEEEec-----CCCHHHHHHHHHHHHhcCCCccEEEE-EEecC
Q 020275 159 KDFHRRRLQVLVESGP--DLLAFET-----IPNKLEAQALVELLEEENIQIPSWIC-FSSVD 212 (328)
Q Consensus 159 ~~~h~~qi~~l~~~gv--D~i~~ET-----~~~~~E~~a~~~~~~~~~~~~pv~is-~~~~~ 212 (328)
...|...++.|.+.|+ |.|-++. .|++.+++..++.+.+. ++|++|| +.+..
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~--g~pi~iTE~dv~~ 194 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL--GLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc--CCceEEEEeecCC
Confidence 3577888888888775 7777653 37888999999888877 5999999 76643
No 132
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=82.99 E-value=19 Score=35.08 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeE-EEecCCCH------HHHHHHHHHHHh----cCCCccEEEEEEecCCCCCCCCCC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLL-AFETIPNK------LEAQALVELLEE----ENIQIPSWICFSSVDGENAPSGES 221 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i-~~ET~~~~------~E~~a~~~~~~~----~~~~~pv~is~~~~~~~~l~~G~~ 221 (328)
++.++ +.++++.+..+|||+| ..|++.+. +-++.+.+++++ ++..+++...+ ++.
T Consensus 143 ld~~~----la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ni---------t~~- 208 (367)
T cd08205 143 LSPEE----LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNI---------TGD- 208 (367)
T ss_pred CCHHH----HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc---------CCC-
Confidence 45555 4667888888999998 44444332 333444444433 34334444444 233
Q ss_pred HHHHHHHHHh--cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 222 FKECLDIINK--SGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 222 ~~~~~~~~~~--~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
..++++..+. ..+++++.+|-. ......++.+.+..+.|+..+|+.
T Consensus 209 ~~e~i~~a~~a~~~Gad~vmv~~~--~~g~~~~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 209 PDELRRRADRAVEAGANALLINPN--LVGLDALRALAEDPDLPIMAHPAF 256 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--cccccHHHHHHhcCCCeEEEccCc
Confidence 2566654422 246666666654 222333455555556677777775
No 133
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=82.94 E-value=42 Score=31.84 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc--CCceEEEEC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS--GKVNAVGIN 241 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~--~~~~~iGvN 241 (328)
..++.+.+.|+|.+.++.-.++.|++.. .+.+. .+.-.++....+..|+ .+++.+.+++. .+...+...
T Consensus 244 ~~l~~~~~~g~d~~~~d~~~dl~~~~~~------~g~~~--~i~Gnidp~~~l~~gt-~eeI~~~v~~~l~~g~~Il~~g 314 (339)
T PRK06252 244 SILEEMADCGFDGISIDEKVDVKTAKEN------VGDRA--ALIGNVSTSFTLLNGT-PEKVKAEAKKCLEDGVDILAPG 314 (339)
T ss_pred HHHHHHHhcCCCeeccCCCCCHHHHHHH------hCCCe--EEEeccCcHHHhcCCC-HHHHHHHHHHHHHcCCCEEcCC
Confidence 3566677789999998887788775432 22122 2223333323344454 24333333221 234566777
Q ss_pred CCC-----hhhhHHHHHHHHh
Q 020275 242 CAP-----PQFVENLICYFKE 257 (328)
Q Consensus 242 C~~-----p~~~~~~l~~l~~ 257 (328)
|.- ++.+..+++..+.
T Consensus 315 cgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 315 CGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 852 4666666666554
No 134
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=82.93 E-value=5.8 Score=34.72 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
+.+|+-...+++ |-+.|||++.| |+ +..+++.|++.++++++ ++-+|.
T Consensus 5 l~~~~gr~~l~~--L~~~ADV~i~n-~r--pg~~~~lGl~~~~l~~~---------------------------nP~LV~ 52 (191)
T PF02515_consen 5 LKSPEGRAALRR--LLATADVVIEN-FR--PGVLERLGLDYEALRAI---------------------------NPRLVY 52 (191)
T ss_dssp TTSHHHHHHHHH--HHHT-SEEEEE-SS--TTHHHHTT-SHHHHHHH----------------------------TT-EE
T ss_pred CcCHHHHHHHHH--HHHhCCEEEEC-Cc--hhhhHhcCCCHHHHHhh---------------------------CCCCeE
Confidence 456665444433 34579999998 55 66788889987555431 366889
Q ss_pred eecCCccc
Q 020275 130 ASIGSYGA 137 (328)
Q Consensus 130 GsiGP~g~ 137 (328)
.++.+||.
T Consensus 53 ~~isgfG~ 60 (191)
T PF02515_consen 53 CSISGFGQ 60 (191)
T ss_dssp EEEESS-S
T ss_pred EEEEeecC
Confidence 99999986
No 135
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=82.65 E-value=35 Score=30.42 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCeEEEecC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCC-----C-CCCCCCCHHHHHHHHHhcCC
Q 020275 163 RRRLQVLVESGPDLLAFETI--PNKLEAQALVELLEEENIQIPSWICFSSVDG-----E-NAPSGESFKECLDIINKSGK 234 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~-----~-~l~~G~~~~~~~~~~~~~~~ 234 (328)
.++++.+.+.|+|.+++-|. .+... +.+++++.+ ..+++|+.++.. + .-.+..++.+.+..+.+ .+
T Consensus 86 ~ed~~~~~~~Ga~~vilg~~~l~~~~~---l~ei~~~~~--~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~-~g 159 (233)
T PRK00748 86 LETVEALLDAGVSRVIIGTAAVKNPEL---VKEACKKFP--GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED-AG 159 (233)
T ss_pred HHHHHHHHHcCCCEEEECchHHhCHHH---HHHHHHHhC--CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh-cC
Confidence 44667777789999887653 33333 344444443 336677776531 1 11123456677777755 35
Q ss_pred ceEEEECCCChh-----hhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 235 VNAVGINCAPPQ-----FVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 235 ~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
+..+.++....+ .=..+++++.+..+.|+++ |+|
T Consensus 160 ~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia--~GG 198 (233)
T PRK00748 160 VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA--SGG 198 (233)
T ss_pred CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE--eCC
Confidence 555555432211 1146677777766677554 554
No 136
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=82.60 E-value=5.7 Score=38.27 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=52.5
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh-----------------hhHHHHHHHHhhcCCeE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ-----------------FVENLICYFKELTKKAI 263 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~-----------------~~~~~l~~l~~~~~~pl 263 (328)
+.|.+|.|.-+ |=+.+.+|++.+.. ..++|++||.-|. .+..++..++..+..|+
T Consensus 73 D~PLIvQf~~n------dp~~ll~Aa~lv~~--y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pV 144 (358)
T KOG2335|consen 73 DRPLIVQFGGN------DPENLLKAARLVQP--YCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPV 144 (358)
T ss_pred CCceEEEEcCC------CHHHHHHHHHHhhh--hcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCe
Confidence 68999999642 33456778877653 4599999997653 23444555555555565
Q ss_pred EEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 264 VVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 264 ~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
.++---+ -+.++=.++++...++|++++
T Consensus 145 s~KIRI~---------------~d~~kTvd~ak~~e~aG~~~l 172 (358)
T KOG2335|consen 145 SVKIRIF---------------VDLEKTVDYAKMLEDAGVSLL 172 (358)
T ss_pred EEEEEec---------------CcHHHHHHHHHHHHhCCCcEE
Confidence 4433211 145566778888888888554
No 137
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=82.51 E-value=49 Score=32.03 Aligned_cols=130 Identities=17% Similarity=0.083 Sum_probs=75.5
Q ss_pred HHhccceeecCCcCCChhhHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCC-cccCcCC
Q 020275 64 LEAGADILVTSSYQATIPGFLS-RGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGS-YGAYLAD 141 (328)
Q Consensus 64 l~AGAdiI~TnTy~as~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP-~g~~l~~ 141 (328)
+++|++.|.... .+|...++. .+.+.+++-+.....++.|++. + ..|.+.+.. +|
T Consensus 131 ~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~---------------G--l~v~~~is~~fg----- 187 (347)
T PLN02746 131 IAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH---------------S--IPVRGYVSCVVG----- 187 (347)
T ss_pred HHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---------------C--CeEEEEEEeeec-----
Confidence 467888665553 555555433 3677666666666677666642 1 234433322 11
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCC
Q 020275 142 GSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPS 218 (328)
Q Consensus 142 ~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~ 218 (328)
.+|.+. .+.+ +..+.++.+.+.|+|-|-+- |+ -++.++..+++.+++.- +. .-|.|.+=++ .
T Consensus 188 -~p~~~r----~~~~----~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~-~~-~~i~~H~Hnd----~ 252 (347)
T PLN02746 188 -CPIEGP----VPPS----KVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV-PV-DKLAVHFHDT----Y 252 (347)
T ss_pred -CCccCC----CCHH----HHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC-CC-CeEEEEECCC----C
Confidence 123332 3444 44666777788999988654 44 45688888888887642 21 2356666443 4
Q ss_pred CCCHHHHHHHHHh
Q 020275 219 GESFKECLDIINK 231 (328)
Q Consensus 219 G~~~~~~~~~~~~ 231 (328)
|..+..++..+..
T Consensus 253 GlA~AN~lAA~~a 265 (347)
T PLN02746 253 GQALANILVSLQM 265 (347)
T ss_pred ChHHHHHHHHHHh
Confidence 6677777776654
No 138
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.48 E-value=24 Score=34.83 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=53.1
Q ss_pred CceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCc
Q 020275 124 NRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQI 202 (328)
Q Consensus 124 ~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~ 202 (328)
.+.+|..++|+... ..++++.|+++|||+|.+-+ -++-..+...++.+++.-.++
T Consensus 140 ~~l~v~aavg~~~~------------------------~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 140 NKLRVGAAVSIDID------------------------TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred cCeEEEEEEeCCHH------------------------HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 46788999987321 25789999999999999874 344455556676677642256
Q ss_pred cEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 203 PSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 203 pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
++++.. -.+.+++...++ .++++|.+
T Consensus 196 ~vi~g~----------V~T~e~a~~l~~--aGaD~I~v 221 (404)
T PRK06843 196 DLIAGN----------IVTKEAALDLIS--VGADCLKV 221 (404)
T ss_pred cEEEEe----------cCCHHHHHHHHH--cCCCEEEE
Confidence 766543 345666766664 35666554
No 139
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.33 E-value=21 Score=33.49 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=48.8
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcC--CceEEEECCCC------------hhhhHHHHHHHHhhcCCeEEEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSG--KVNAVGINCAP------------PQFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~--~~~~iGvNC~~------------p~~~~~~l~~l~~~~~~pl~~y 266 (328)
+.|+++|+... -+.+.++++.+.+.. ++++|=+|++. |+.+..+++.+++..+.|+.++
T Consensus 91 ~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 91 AKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred CCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999421 122233444443322 57888888873 4567777888888778898885
Q ss_pred eCCCCccCCccccccCCCCCChhHHHHHHHHHHHc
Q 020275 267 PNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDS 301 (328)
Q Consensus 267 pN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (328)
--.+ .+..++++.+....+.
T Consensus 164 l~p~---------------~~~~~~~~~a~~l~~~ 183 (294)
T cd04741 164 TPPY---------------TDPAQFDTLAEALNAF 183 (294)
T ss_pred eCCC---------------CCHHHHHHHHHHHhcc
Confidence 4311 2344566666666665
No 140
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=82.23 E-value=36 Score=30.28 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE--
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI-- 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv-- 240 (328)
.+|++...++|+|+++. |..+ ..++++.+.. +.|++.+. .+++++..... .+++.+++
T Consensus 73 ~~~~~~a~~aGA~fivs---p~~~--~~v~~~~~~~--~~~~~~G~-----------~t~~E~~~A~~--~Gad~vk~Fp 132 (206)
T PRK09140 73 PEQVDRLADAGGRLIVT---PNTD--PEVIRRAVAL--GMVVMPGV-----------ATPTEAFAALR--AGAQALKLFP 132 (206)
T ss_pred HHHHHHHHHcCCCEEEC---CCCC--HHHHHHHHHC--CCcEEccc-----------CCHHHHHHHHH--cCCCEEEECC
Confidence 45888888999999985 3322 2344445544 47777552 35677766554 46788887
Q ss_pred -CCCChhhhHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCCh---
Q 020275 241 -NCAPPQFVENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTP--- 314 (328)
Q Consensus 241 -NC~~p~~~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P--- 314 (328)
+..+| ..++.++... +.|++ |=+| +++ +.+.+|++.|+..++..-.-..
T Consensus 133 a~~~G~----~~l~~l~~~~~~~ipvv--aiGG---------------I~~----~n~~~~~~aGa~~vav~s~l~~~~~ 187 (206)
T PRK09140 133 ASQLGP----AGIKALRAVLPPDVPVF--AVGG---------------VTP----ENLAPYLAAGAAGFGLGSALYRPGQ 187 (206)
T ss_pred CCCCCH----HHHHHHHhhcCCCCeEE--EECC---------------CCH----HHHHHHHHCCCeEEEEehHhccccc
Confidence 33333 3444444433 25543 3333 334 3455688899987776655543
Q ss_pred --HHHHHHHHHH
Q 020275 315 --STIQAVSKVL 324 (328)
Q Consensus 315 --~hI~al~~~l 324 (328)
+.|++.++.+
T Consensus 188 ~~~~i~~~a~~~ 199 (206)
T PRK09140 188 SAEEVAERARAF 199 (206)
T ss_pred ChHHHHHHHHHH
Confidence 6677766654
No 141
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=81.91 E-value=47 Score=34.60 Aligned_cols=98 Identities=10% Similarity=0.208 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHH---HHHHHhcCCceEEE
Q 020275 164 RRLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKEC---LDIINKSGKVNAVG 239 (328)
Q Consensus 164 ~qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~~iG 239 (328)
.-++...++|+|.| +|-.++++..++..++++++.+...-+.++++.. .. .+++.. ++.+.+ .+++.|.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~--p~----~t~~~~~~~a~~l~~-~Gad~I~ 172 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTS--PV----HTIEKYVELAKELEE-MGCDSIC 172 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccC--CC----CCHHHHHHHHHHHHH-cCCCEEE
Confidence 34555667899987 4557778888898999999876322233333321 11 234433 333333 4666665
Q ss_pred ECCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 240 INCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 240 vNC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+-=+ .|..+..+++.+++..+.||.+...
T Consensus 173 i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~H 205 (592)
T PRK09282 173 IKDMAGLLTPYAAYELVKALKEEVDLPVQLHSH 205 (592)
T ss_pred ECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 5433 4999999999999887778877554
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.85 E-value=62 Score=33.62 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCeEE-EecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLA-FETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~-~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.-++...+.|+|.|- |-.+++...++..++.+++.+ +-+.++++...... -+-+-+.+.++.+.+ .+++.|.+-=
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~~~~~~~-~Gad~I~i~D 170 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHG--AHAQGTISYTTSPV-HTLETYLDLAEELLE-MGVDSICIKD 170 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CEEEEEEEeccCCC-CCHHHHHHHHHHHHH-cCCCEEEECC
Confidence 345556678999874 446778888898999999886 44444433222111 111223344444433 4666665543
Q ss_pred C----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 243 A----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 243 ~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+ .|..+..+++.+++..+.||.+.-.
T Consensus 171 t~G~~~P~~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 171 MAGILTPKAAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3 4999999999999887777776544
No 143
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=81.64 E-value=48 Score=33.48 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---HHHHHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFK---ECLDIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~~iGv 240 (328)
.++...+.|+|.| +|-.++++..++..++++++.+...-..++.++.. -.+++ +.++.+.+ .+++.|.+
T Consensus 100 fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p------~~t~e~~~~~a~~l~~-~Gad~I~i 172 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP------VHTLEYYLEFARELVD-MGVDSICI 172 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCC------CCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 4555667899987 45567778888888899988763222334433321 12333 34444443 46666655
Q ss_pred CCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
-=+ .|..+..+++.+++..+.||.+...
T Consensus 173 ~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 173 KDMAGLLTPKRAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred CCccCCcCHHHHHHHHHHHHHhcCCceEEEec
Confidence 433 4999999999999887788877654
No 144
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=81.49 E-value=3.9 Score=39.45 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHh---cCCCccEEEEEEecCC----------------CCC-------
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEE---ENIQIPSWICFSSVDG----------------ENA------- 216 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~---~~~~~pv~is~~~~~~----------------~~l------- 216 (328)
-.|+..|.++|+|++-+ |+|+.++++++-+..+. .+.+.|++.-+.|+.. |++
T Consensus 34 v~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~kiRINPGNi~~~~~~~ 112 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVDKIRINPGNIVDEFQEE 112 (359)
T ss_dssp HHHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-SEEEE-TTTSS----SS
T ss_pred HHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhCeEEECCCccccccccc
Confidence 57999999999999874 78999998887665554 3457999998887542 333
Q ss_pred -CC-CCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 217 -PS-GESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 217 -~~-G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
.+ -+.+.+.++.+++..-+.=||+|..+
T Consensus 113 ~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 113 LGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp -SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 11 12345566666555567789999976
No 145
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=81.47 E-value=26 Score=36.07 Aligned_cols=105 Identities=9% Similarity=0.046 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCeEEEecCC--CHHH---------HHHHHHHHHhcCCCccEEEEEEecCCC------------------
Q 020275 164 RRLQVLVESGPDLLAFETIP--NKLE---------AQALVELLEEENIQIPSWICFSSVDGE------------------ 214 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~--~~~E---------~~a~~~~~~~~~~~~pv~is~~~~~~~------------------ 214 (328)
++++.++++|+|-+.+-|.- +++| -..+-+++++++ +.-+++|+..++..
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg-~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYG-NQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcC-CceEEEEEecCcCcccCccccccccccccccC
Confidence 56888899999999998732 2222 244556677776 57789999875321
Q ss_pred ----------------CCCCCCCHHHHHHHHHhcCCceEEEECCCChhh-----hHHHHHHHHhhcCCeEEEEeCCC
Q 020275 215 ----------------NAPSGESFKECLDIINKSGKVNAVGINCAPPQF-----VENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 215 ----------------~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~-----~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
+-..+.++.+.+..+.+ .++.-|.+|+..-+- =..+++.+.+....|+++..-.|
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~-~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g 492 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE-LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAG 492 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHh-cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCC
Confidence 11134566677777765 577889999985332 25677777777888998866555
No 146
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=81.35 E-value=51 Score=31.47 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe-
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSR-GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA- 130 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG- 130 (328)
.+.+.+.-++-++.|-.-|..+ ..-+...+.. |-+...-..++.++++..++.. .++.|..
T Consensus 56 id~l~~~v~~~~~~GI~~v~lF--gvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~---------------pdl~vi~D 118 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVILF--GVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAF---------------PDLLVITD 118 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE--EE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHS---------------TTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE--eeCCcccCCcchhcccCCCChHHHHHHHHHHhC---------------CCcEEEEe
Confidence 4667777788889998744432 1101111111 1000011246777777776553 2344444
Q ss_pred -ecCCcccCcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC-CccEEEE
Q 020275 131 -SIGSYGAYLADGSE-YSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI-QIPSWIC 207 (328)
Q Consensus 131 -siGP~g~~l~~~~e-Y~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~-~~pv~is 207 (328)
|+-||-..-++|-- .. ...++-++-.+...+|+-.++++|+|++.==-|.+ -.+.++.+++.+.+- +.|++ |
T Consensus 119 vclc~YT~hGHcGil~~~---~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMD-GrV~aIR~aLd~~g~~~v~Im-S 193 (324)
T PF00490_consen 119 VCLCEYTSHGHCGILDDE---DGEIDNDETLERLAKQALSHAEAGADIVAPSDMMD-GRVGAIREALDEAGFSDVPIM-S 193 (324)
T ss_dssp E-STTTBTSSSSSEB-CT---TSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--T-THHHHHHHHHHHTTCTTSEEE-E
T ss_pred cccccccCCCceEEEECC---CCeEecHHHHHHHHHHHHHHHHhCCCeeccccccC-CHHHHHHHHHHhCCCCCccEE-e
Confidence 45666554333321 01 12356677778888899999999999998665555 356778888887653 45554 6
Q ss_pred EEecCC-------------------C--CCCCCCCHHHHHHHH--HhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEE
Q 020275 208 FSSVDG-------------------E--NAPSGESFKECLDII--NKSGKVNAVGINCAPPQFVENLICYFKELTKKAIV 264 (328)
Q Consensus 208 ~~~~~~-------------------~--~l~~G~~~~~~~~~~--~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~ 264 (328)
.+.+=- . -.+|-....+|++.+ +-..+.+.+.|-=..| .+.+|+.+++.++.|+.
T Consensus 194 YsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~~P~~ 271 (324)
T PF00490_consen 194 YSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALP--YLDIIRRVKERFDLPVA 271 (324)
T ss_dssp EEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGG--GHHHHHHHHHHCTS-EE
T ss_pred chHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchh--HHHHHHHHHHhcCCCEE
Confidence 664321 0 122223445555543 2224788888875543 46788888888899999
Q ss_pred EEeCCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 265 VYPNSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 265 ~ypN~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
+|--+|+- .-...+.|+.. ...+.|...-+..+|+.+|
T Consensus 272 aYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 272 AYQVSGEYAMIKAAAQNGWIDE----KRVVLESLLSIKRAGADII 312 (324)
T ss_dssp EEETHHHHHHHHHHHHTTSS-H----HHHHHHHHHHHHHHT-SEE
T ss_pred EEEehHHHHHHHHHHHCCCcch----hhHHHHHHHHHHHcCCCEE
Confidence 99999851 11222346321 2347777888899999876
No 147
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.16 E-value=28 Score=31.19 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE--
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI-- 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv-- 240 (328)
.+|++...++|++|++ -|... ..+++++++.+ +|++ +.-.++.++..... .+++.+++
T Consensus 78 ~~~~~~a~~aGA~Fiv---sP~~~--~~v~~~~~~~~--i~~i-----------PG~~T~~E~~~A~~--~Gad~vklFP 137 (213)
T PRK06552 78 AVTARLAILAGAQFIV---SPSFN--RETAKICNLYQ--IPYL-----------PGCMTVTEIVTALE--AGSEIVKLFP 137 (213)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC--HHHHHHHHHcC--CCEE-----------CCcCCHHHHHHHHH--cCCCEEEECC
Confidence 4588888899999998 34442 34566677664 8887 12246788887764 47888888
Q ss_pred -CCCChhhhHHHHHHHHhhcC-CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeec
Q 020275 241 -NCAPPQFVENLICYFKELTK-KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGC 309 (328)
Q Consensus 241 -NC~~p~~~~~~l~~l~~~~~-~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGC 309 (328)
....| ..++.++...+ .|++ |-+| +++ +.+.+|++.|+..+|..
T Consensus 138 a~~~G~----~~ik~l~~~~p~ip~~--atGG---------------I~~----~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 138 GSTLGP----SFIKAIKGPLPQVNVM--VTGG---------------VNL----DNVKDWFAAGADAVGIG 183 (213)
T ss_pred cccCCH----HHHHHHhhhCCCCEEE--EECC---------------CCH----HHHHHHHHCCCcEEEEc
Confidence 33333 44555544333 4543 4333 334 44556888998666543
No 148
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.94 E-value=37 Score=29.62 Aligned_cols=66 Identities=8% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
+++.+.+.|+|++.+=-.........+++.+++.+ .++++.+.- ..++++++.... + .+++.++++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~-------~~t~~~~~~~~~-~-~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLIN-------VKDKVKRAKELK-E-LGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecC-------CCChHHHHHHHH-H-cCCCEEEEc
Confidence 67888899999987554444445677888888774 888886521 234555555443 3 367888886
No 149
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=80.34 E-value=2.8 Score=39.30 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
-+|+.+.+++|+|+|+.|-+.+.+|.+.++++++ .|+.+.++
T Consensus 169 I~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-----~pl~~N~t 210 (289)
T COG2513 169 IERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-----VPLPANIT 210 (289)
T ss_pred HHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-----CCeeeEee
Confidence 5688889999999999999999999998888775 55555554
No 150
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=79.82 E-value=49 Score=30.25 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC--------------CCCCCCHHHHHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGEN--------------APSGESFKECLDII 229 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~--------------l~~G~~~~~~~~~~ 229 (328)
+.++.+...|+|.+.+-|.. +.+...+.++.++.+ +-.+++|+.+.+... ...+..+.+.+..+
T Consensus 87 ~d~~~~~~~Ga~~vivgt~~-~~~p~~~~~~~~~~~-~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l 164 (254)
T TIGR00735 87 EDVDKLLRAGADKVSINTAA-VKNPELIYELADRFG-SQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV 164 (254)
T ss_pred HHHHHHHHcCCCEEEEChhH-hhChHHHHHHHHHcC-CCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH
Confidence 35556666899998876532 122333344444443 356788988754321 12345566677766
Q ss_pred HhcCCceEEEECCCChh-----hhHHHHHHHHhhcCCeEEE
Q 020275 230 NKSGKVNAVGINCAPPQ-----FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 230 ~~~~~~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ 265 (328)
.+ .+++.|-+.....+ .-..+++++.+.++.|+++
T Consensus 165 ~~-~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia 204 (254)
T TIGR00735 165 EK-LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIA 204 (254)
T ss_pred HH-cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEE
Confidence 65 47777777664321 2246777777777778655
No 151
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=79.56 E-value=60 Score=31.11 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCC-CeEEEecCCCHHHHHH-HHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 162 HRRRLQVLVESGP-DLLAFETIPNKLEAQA-LVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 162 h~~qi~~l~~~gv-D~i~~ET~~~~~E~~a-~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
||..++.+ |+ |+++-|.+..-.=+.. ..+.+.......|+++++.-. +-+.+.+++..+.+ .+.++|-
T Consensus 26 fR~~~~~~---g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~Id 95 (333)
T PRK11815 26 CRYFHRLL---SRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLAED-WGYDEIN 95 (333)
T ss_pred HHHHHHHh---CCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHHHh-cCCCEEE
Confidence 45454433 54 8887776643211110 112233333468999998411 22334455555554 4789999
Q ss_pred ECCCChh-----------------hhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcC
Q 020275 240 INCAPPQ-----------------FVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSG 302 (328)
Q Consensus 240 vNC~~p~-----------------~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 302 (328)
|||..|. .+..+++.+++..+.|+.++--.| |... .+.++..++++.+.+.|
T Consensus 96 lN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g---------~~~~--~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 96 LNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG---------IDDQ--DSYEFLCDFVDTVAEAG 164 (333)
T ss_pred EcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee---------eCCC--cCHHHHHHHHHHHHHhC
Confidence 9997552 233566677766677888754222 1111 12445778888888889
Q ss_pred CeEE
Q 020275 303 AKLI 306 (328)
Q Consensus 303 ~~ii 306 (328)
+..|
T Consensus 165 ~d~i 168 (333)
T PRK11815 165 CDTF 168 (333)
T ss_pred CCEE
Confidence 8655
No 152
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=79.54 E-value=63 Score=31.35 Aligned_cols=99 Identities=9% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCeEEEecCCC---------------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIPN---------------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~---------------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
+-++...+.|+|.|.+-.-.| +..+..+++.+++.+ . .++|++.+..+. +=+-+.+.++.
T Consensus 76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g--~--~v~~~~ed~~r~-~~~~l~~~~~~ 150 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRG--L--FVSVGGEDASRA-DPDFLVELAEV 150 (365)
T ss_pred HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--C--EEEEeecCCCCC-CHHHHHHHHHH
Confidence 346677788999876654333 334445667777665 3 356776655543 22223344444
Q ss_pred HHhcCCceEEEECC----CChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 229 INKSGKVNAVGINC----APPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 229 ~~~~~~~~~iGvNC----~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+.+ .+++.|.+-= ..|..+..+++.+++..+.||.+...
T Consensus 151 ~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 151 AAE-AGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HHH-cCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 443 3555554432 24999999999998877778777654
No 153
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=79.43 E-value=3.4 Score=38.33 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=61.2
Q ss_pred eEEEecchHHHHHHCCCCCCC-----------ccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCC
Q 020275 21 CAVIDGGFATQLETHGASIND-----------PLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLS 89 (328)
Q Consensus 21 ~lvlDGg~gt~L~~~G~~~~~-----------~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~ 89 (328)
+-++||-+-..|+..|+..+. -+++ .+.+-++|..++ ..+||||||..+= ..+.... .|..
T Consensus 118 vgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T-~~yvf~~e~A~~----M~~AGaDiiv~H~-GlT~gG~--~Ga~ 189 (268)
T PF09370_consen 118 VGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFT-TAYVFNEEQARA----MAEAGADIIVAHM-GLTTGGS--IGAK 189 (268)
T ss_dssp GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE---EE-SHHHHHH----HHHHT-SEEEEE--SS-----------
T ss_pred ceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCee-eeeecCHHHHHH----HHHcCCCEEEecC-CccCCCC--cCcc
Confidence 456899999999999765421 1222 122345665554 4699999998762 2222111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 020275 90 IEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVL 169 (328)
Q Consensus 90 ~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l 169 (328)
-..-+..+++++.+..+...+. +.+++|..-=||.. ++++++..++.-
T Consensus 190 ---~~~sl~~a~~~~~~i~~aa~~v--------~~dii~l~hGGPI~-----------------~p~D~~~~l~~t---- 237 (268)
T PF09370_consen 190 ---TALSLEEAAERIQEIFDAARAV--------NPDIIVLCHGGPIA-----------------TPEDAQYVLRNT---- 237 (268)
T ss_dssp ----S--HHHHHHHHHHHHHHHHCC---------TT-EEEEECTTB------------------SHHHHHHHHHH-----
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHh--------CCCeEEEEeCCCCC-----------------CHHHHHHHHhcC----
Confidence 0112334444554444443222 34566776668853 557776666543
Q ss_pred HhcCCCeEEE-ecCCCHHHHHHHHHHHHhc
Q 020275 170 VESGPDLLAF-ETIPNKLEAQALVELLEEE 198 (328)
Q Consensus 170 ~~~gvD~i~~-ET~~~~~E~~a~~~~~~~~ 198 (328)
.|+|.|+- .+|-.+.-=+++.+..+++
T Consensus 238 --~~~~Gf~G~Ss~ERlP~E~ai~~~~~~F 265 (268)
T PF09370_consen 238 --KGIHGFIGASSMERLPVERAITETVRAF 265 (268)
T ss_dssp --TTEEEEEESTTTTHHHHHHHHHHHHHHH
T ss_pred --CCCCEEecccchhhccHHHHHHHHHHHh
Confidence 45666542 3333332224444444443
No 154
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.42 E-value=53 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=25.6
Q ss_pred cCCChHHHHHHHHHHHHhccceeecCCcC
Q 020275 49 LIKQPHLVKRVHLEYLEAGADILVTSSYQ 77 (328)
Q Consensus 49 ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~ 77 (328)
.+++++.+.++=+.--++|++++....|-
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~k 64 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFK 64 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 37889999998888889999999999994
No 155
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.42 E-value=74 Score=32.13 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecC
Q 020275 54 HLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIG 133 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiG 133 (328)
|.|+..-+.-.+.|.||++..+.--. + +..+.+++.++++ + ..+.++++
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd-------------~-~n~~~ai~~ak~~---------------G--~~~~~~i~ 153 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALND-------------P-RNIQQALRAVKKT---------------G--KEAQLCIA 153 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCC-------------H-HHHHHHHHHHHHc---------------C--CEEEEEEE
Confidence 45666666667889999988873211 1 3445556655542 2 23335553
Q ss_pred CcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec---CCCHHHHHHHHHHHHhcCCCccEEEEEEe
Q 020275 134 SYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET---IPNKLEAQALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 134 P~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET---~~~~~E~~a~~~~~~~~~~~~pv~is~~~ 210 (328)
-.++ +.| -.+||.+.++.+.+.|+|.|.+-. +-.+.++...++++++.. ++|+ .|.+
T Consensus 154 yt~s---------p~~--------t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~-~~pi--~~H~ 213 (468)
T PRK12581 154 YTTS---------PVH--------TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT-NLPL--IVHT 213 (468)
T ss_pred EEeC---------CcC--------cHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc-CCeE--EEEe
Confidence 3321 111 236788899999999999998763 346688888899988753 5664 5544
Q ss_pred cCCCCCCCCCCHHHHHHHHH
Q 020275 211 VDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 211 ~~~~~l~~G~~~~~~~~~~~ 230 (328)
=++ .|..+..++..+.
T Consensus 214 Hnt----~GlA~An~laAie 229 (468)
T PRK12581 214 HAT----SGISQMTYLAAVE 229 (468)
T ss_pred CCC----CccHHHHHHHHHH
Confidence 222 3444454444443
No 156
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=79.32 E-value=59 Score=30.96 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhC-----CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceE
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSR-----GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRAL 127 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-----g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 127 (328)
.+.+.+.-++-++.|-.-|..+ .......+.. .+.+ .-++.++++..++.. ...+
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LF--gv~~~~~Kd~~~gs~a~~~---~g~v~~air~iK~~~---------------pdl~ 109 (320)
T cd04824 50 VNRLEEFLRPLVAKGLRSVILF--GVPLKPGKDDRSGSAADDE---DGPVIQAIKLIREEF---------------PELL 109 (320)
T ss_pred HHHHHHHHHHHHHCCCCEEEEe--CCCccccCCcCccccccCC---CChHHHHHHHHHHhC---------------CCcE
Confidence 4566666778889998755543 3221111111 1221 246777777776542 2344
Q ss_pred EEe--ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC--Ccc
Q 020275 128 VAA--SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI--QIP 203 (328)
Q Consensus 128 VaG--siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~--~~p 203 (328)
|.. |+-||-..-+.|--..+ ..++-++-.+...+|+-.++++|+|++.==.|-+- .+.++.+++.+.+. +.|
T Consensus 110 vi~Dvclc~YT~hGHcGil~~~---g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLD~~G~~~~v~ 185 (320)
T cd04824 110 IACDVCLCEYTSHGHCGILYED---GTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDG-RVRAIKQALIQAGLGNKVS 185 (320)
T ss_pred EEEeeeccCCCCCCcceeECCC---CcCcCHHHHHHHHHHHHHHHHhCCCEEeccccccc-HHHHHHHHHHHCCCccCCe
Confidence 444 45555443222211101 12445666677788888889999999986555553 56777888887664 455
Q ss_pred EEEEEEecC-------------------CC--CCCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhc-
Q 020275 204 SWICFSSVD-------------------GE--NAPSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELT- 259 (328)
Q Consensus 204 v~is~~~~~-------------------~~--~l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~- 259 (328)
++ |-+.+= +. -.+|=..-.++++.+. -..+.+.+.|-=..| .+.+|+.+++.+
T Consensus 186 Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~ 262 (320)
T cd04824 186 VM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP--YLDIVREAKDKHP 262 (320)
T ss_pred ee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHhcc
Confidence 54 443211 00 0122223345555432 224788888876543 467788888888
Q ss_pred CCeEEEEeCCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 260 KKAIVVYPNSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 260 ~~pl~~ypN~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
+.|+.+|--+|+- .-.....|+.. ...+.|...-++.+|+.+|
T Consensus 263 ~~PvaaYqVSGEYaMikaAa~~G~iDe----~~~~~Esl~~ikRAGAd~I 308 (320)
T cd04824 263 DLPLAVYHVSGEYAMLHAAAEAGAFDL----KRAVLEAMTGFRRAGADII 308 (320)
T ss_pred CCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 8999999999951 12223346431 2347777888899999876
No 157
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.20 E-value=62 Score=31.10 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecC---------------CC---HHHHHHHHHHHHhcCCCccEEEEEEecCC----
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLAFETI---------------PN---KLEAQALVELLEEENIQIPSWICFSSVDG---- 213 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~~ET~---------------~~---~~E~~a~~~~~~~~~~~~pv~is~~~~~~---- 213 (328)
+++.+||+++++ .|+-+|+.|.. .+ +...+.+++++++.+ ..+++.+.-...
T Consensus 37 ~~~~~~y~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G--~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 37 NFHLIHYGTRAA----GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHG--AKAAIQLAHAGRKAEL 110 (337)
T ss_pred HHHHHHHHHHHc----CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcC--CEEEEEccCCCCCCCC
Confidence 667778887755 67888877722 11 344455667777664 667777642111
Q ss_pred ---------------CCCCCCCCHHHH----------HHHHHhcCCceEEEECCCC---------h--------------
Q 020275 214 ---------------ENAPSGESFKEC----------LDIINKSGKVNAVGINCAP---------P-------------- 245 (328)
Q Consensus 214 ---------------~~l~~G~~~~~~----------~~~~~~~~~~~~iGvNC~~---------p-------------- 245 (328)
...+...+.++. +..+.+ .+.++|-|||.+ |
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGsle 189 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE 189 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHH
Confidence 011122333322 222222 589999999984 3
Q ss_pred ---hhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEe
Q 020275 246 ---QFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIG 307 (328)
Q Consensus 246 ---~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 307 (328)
..+..+++.+++..+.|+++.-|..+ +.. ...+++++.++++.+.+.|+.+|=
T Consensus 190 nR~Rf~~eii~~ir~~~~~~v~vRis~~d--------~~~-~G~~~~e~~~i~~~l~~~gvD~i~ 245 (337)
T PRK13523 190 NRYRFLREIIDAVKEVWDGPLFVRISASD--------YHP-GGLTVQDYVQYAKWMKEQGVDLID 245 (337)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecccc--------cCC-CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11334556666666678888777532 211 124577788888878777875543
No 158
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=79.20 E-value=42 Score=29.16 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.++++.+.+.|+|++..- ... ..++++.++. +.|+++.. .+++++...+. .+++.+++-=
T Consensus 66 ~~~~~~a~~~Ga~~i~~p---~~~--~~~~~~~~~~--~~~~i~gv-----------~t~~e~~~A~~--~Gad~i~~~p 125 (190)
T cd00452 66 PEQADAAIAAGAQFIVSP---GLD--PEVVKAANRA--GIPLLPGV-----------ATPTEIMQALE--LGADIVKLFP 125 (190)
T ss_pred HHHHHHHHHcCCCEEEcC---CCC--HHHHHHHHHc--CCcEECCc-----------CCHHHHHHHHH--CCCCEEEEcC
Confidence 567888888999999743 221 2355556654 47777533 26788877664 4788888743
Q ss_pred CChhhhHHHHHHHHhhcC-CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHH
Q 020275 243 APPQFVENLICYFKELTK-KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQ 318 (328)
Q Consensus 243 ~~p~~~~~~l~~l~~~~~-~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~ 318 (328)
..+. ....++.++...+ .|+++ -+| .+++ .+.+|++.|+..++.+....++.+.
T Consensus 126 ~~~~-g~~~~~~l~~~~~~~p~~a--~GG---------------I~~~----n~~~~~~~G~~~v~v~s~i~~~~~~ 180 (190)
T cd00452 126 AEAV-GPAYIKALKGPFPQVRFMP--TGG---------------VSLD----NAAEWLAAGVVAVGGGSLLPKDAVA 180 (190)
T ss_pred Cccc-CHHHHHHHHhhCCCCeEEE--eCC---------------CCHH----HHHHHHHCCCEEEEEchhcchhhhh
Confidence 3333 5566777665432 44433 222 3443 4556889999999988877755433
No 159
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=79.06 E-value=39 Score=31.27 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPN 184 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~ 184 (328)
.+.+++.+.-.+=++.|.++|+|.+++|.+.+
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 47899999999999999999999999998877
No 160
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=78.94 E-value=46 Score=30.84 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeE-----EEecCCC--HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLL-----AFETIPN--KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i-----~~ET~~~--~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
+.+.+++|-...++.+.+ -|.++ +||.... +.+++..++.+++.+ .||++=+..-|= |.+...++
T Consensus 35 ~~~~~~~f~~~ii~~l~~-~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g--~~VilD~K~~DI-----pnTv~~~a 106 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATAE-YAAVVKPQVAFFERFGSEGFKALEEVIAHARSLG--LPVLADVKRGDI-----GSTASAYA 106 (261)
T ss_pred hHHHHHHHHHHHHHhcCC-cceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCC--CeEEEEeeccCh-----HHHHHHHH
Confidence 456777888888888753 34443 4454432 346666667777664 788876654322 33455566
Q ss_pred HHHHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCC-e-EEEEeCCC--CccCCccccccCCCCCC-hhHHHHHHHHHHH
Q 020275 227 DIINKSGKVNAVGINCA-PPQFVENLICYFKELTKK-A-IVVYPNSG--EVWDGRAKKWLPSKCLG-DGKFESFATRWRD 300 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~-p-l~~ypN~g--~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~ 300 (328)
+.+....+++++-+|+. ..+-+.++++...+.... . ++...|.| .+.+.. .....+ .+...+.++.|.+
T Consensus 107 ~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~-----~~~~~~~~~~V~~~a~~~~~ 181 (261)
T TIGR02127 107 KAWLGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLR-----VSDGRTVYEEVAELAGELNE 181 (261)
T ss_pred HHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhh-----ccCCCCHHHHHHHHHHHhcc
Confidence 55542357899999996 467777777765432112 2 22334533 121110 000001 2346666677754
Q ss_pred c-C-CeEEeecC-CCChHHHHHHHHHH
Q 020275 301 S-G-AKLIGGCC-RTTPSTIQAVSKVL 324 (328)
Q Consensus 301 ~-G-~~iiGGCC-Gt~P~hI~al~~~l 324 (328)
. | .-..|-=| .|.|+.++.||+.+
T Consensus 182 ~~~~~g~~GvV~gAT~p~e~~~iR~~~ 208 (261)
T TIGR02127 182 SPGDCSSVGAVVGATSPGDLLRLRIEM 208 (261)
T ss_pred ccCcCCceEEEECCCCHHHHHHHHHhC
Confidence 3 0 11255544 45689999999875
No 161
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=78.92 E-value=7.8 Score=36.74 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=64.1
Q ss_pred hcCCC-eEEEecCCCHHHHHH---HHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC--
Q 020275 171 ESGPD-LLAFETIPNKLEAQA---LVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP-- 244 (328)
Q Consensus 171 ~~gvD-~i~~ET~~~~~E~~a---~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~-- 244 (328)
+.|++ +.+=|.+..-.-+.. ..+.+.......|+++.+.-. +.+.+.+++..+.. .++++|-+||.-
T Consensus 19 ~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~-~~~~~IDlN~GCP~ 91 (309)
T PF01207_consen 19 EFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIVAE-LGFDGIDLNMGCPA 91 (309)
T ss_dssp CCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHHCC-TT-SEEEEEE---S
T ss_pred HHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhhhc-cCCcEEeccCCCCH
Confidence 35666 777776653221111 122222233347999999521 33455566666654 578999999963
Q ss_pred ---------------hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEe
Q 020275 245 ---------------PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIG 307 (328)
Q Consensus 245 ---------------p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 307 (328)
|+.+..+++.+++..+.|+.+.--.| |. -+.++..++++.+.+.|+..|-
T Consensus 92 ~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g---------~~----~~~~~~~~~~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 92 PKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLG---------WD----DSPEETIEFARILEDAGVSAIT 156 (309)
T ss_dssp HHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESE---------CT------CHHHHHHHHHHHHTT--EEE
T ss_pred HHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccc---------cc----cchhHHHHHHHHhhhcccceEE
Confidence 34466777788877788887755433 21 1356788888888888886653
No 162
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=78.84 E-value=61 Score=30.80 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCCeE-EEecCC-----CHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHH
Q 020275 160 DFHRRRLQVLVESGPDLL-AFETIP-----NKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKEC 225 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i-~~ET~~-----~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 225 (328)
+.-.+.++.+.++|+|+| +++... +.++.+ .+++.+++.+ .+.++-+ | |.+ ...
T Consensus 180 ~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g--~~~ilH~-C--------G~~-~~~ 247 (340)
T TIGR01463 180 DFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIG--GITVLHI-C--------GFT-QPI 247 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcC--CceEEEE-C--------CCc-hhh
Confidence 445666777788999985 445332 333222 2334444343 4444433 2 221 123
Q ss_pred HHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 226 LDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 226 ~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
+..+.+ .+++++.+--.. .+ +..++..+..+.++.|- |+. ..+.. -++++..+.+++.++.|--|
T Consensus 248 ~~~l~~-~g~d~ls~d~~~--~l----~~~~~~~g~~~~i~Gni----dp~--~ll~~--gt~eeI~~~v~~~l~~~~~I 312 (340)
T TIGR01463 248 LRDIAN-NGCFGFSVDMKP--GM----DHAKRVIGGQASLVGNL----SPF--STLMN--GTPEKVKKLAKEVLYNGGDI 312 (340)
T ss_pred HHHHHH-hCCCEEeecCCC--CH----HHHHHHcCCceEEEecC----ChH--HHhcC--CCHHHHHHHHHHHHHcCCeE
Confidence 444443 355554432221 12 33334344445566663 111 01111 16888999999999988888
Q ss_pred EeecCCC----ChHHHHHHHHHHhc
Q 020275 306 IGGCCRT----TPSTIQAVSKVLKE 326 (328)
Q Consensus 306 iGGCCGt----~P~hI~al~~~l~~ 326 (328)
++--||. .++.|+++.++++.
T Consensus 313 l~~gcgi~~~tp~eni~a~v~a~~~ 337 (340)
T TIGR01463 313 VMPGCDIDWMTPLENLKAMIEACKS 337 (340)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHh
Confidence 8777764 67899999988765
No 163
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=78.52 E-value=46 Score=30.57 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 163 RRRLQVLVESG-PDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~g-vD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
.+.++.+.+.+ +|++=+|--.....+..++..+++. +.++++|+.. -..+++-..+.+.+..+.. .+++.+=+-
T Consensus 98 ~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~--f~~tP~~~~l~~~~~~~~~-~gaDivKia 172 (253)
T PRK02412 98 LALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEH--GVKVVLSYHD--FEKTPPKEEIVERLRKMES-LGADIVKIA 172 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHc--CCEEEEeeCC--CCCCcCHHHHHHHHHHHHH-hCCCEEEEE
Confidence 33445556677 8999999655555566666666654 4889999962 1223333334444554443 355666565
Q ss_pred CC--ChhhhHHHHHHHHhh----cCCeEEEEeCC
Q 020275 242 CA--PPQFVENLICYFKEL----TKKAIVVYPNS 269 (328)
Q Consensus 242 C~--~p~~~~~~l~~l~~~----~~~pl~~ypN~ 269 (328)
+. ++.....+++..... .+.|++++.-+
T Consensus 173 ~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 173 VMPQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred ecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 54 465566666544322 45788887764
No 164
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=78.20 E-value=61 Score=30.46 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHcCCeEEeecCC-CChHHHHHHHHHHh
Q 020275 288 DGKFESFATRWRDSGAKLIGGCCR-TTPSTIQAVSKVLK 325 (328)
Q Consensus 288 ~~~~~~~~~~~~~~G~~iiGGCCG-t~P~hI~al~~~l~ 325 (328)
-++-.+.++.+.++||..|==-++ .++++|+++.+.++
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFR 206 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhh
Confidence 456677788888999866544443 78888888888775
No 165
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.19 E-value=18 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
++...++.|+|+|.+..|+ ++|++.+++.+++.. ..+.+-.+ .|-+++.+.++.. .+++.|.+--
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~--~~v~ieaS--------GGI~~~ni~~yA~--tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARA--PTVLLESS--------GGLTLDTAAAYAE--TGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 4555567999999999987 899999998776543 22334442 4677776666554 4788877655
No 166
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=78.00 E-value=15 Score=33.55 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=65.0
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHH-HHHHHHhcCCCccEEEEEEecCCCCC--CCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQA-LVELLEEENIQIPSWICFSSVDGENA--PSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a-~~~~~~~~~~~~pv~is~~~~~~~~l--~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
.+++|..-|+.=|.+-| |...++-. +.+.+.+.|.....+.+|.+.++... .+.+++.+++..+.. +++++|-+-
T Consensus 111 ~~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifis 188 (239)
T TIGR02990 111 AVDGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLS 188 (239)
T ss_pred HHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEe
Confidence 35666667888888887 56656544 45557767755666666666555432 233445555555543 678999999
Q ss_pred CCChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 242 CAPPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 242 C~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
|+.- ....+++.+.+..++|++ -.|
T Consensus 189 CTnL-rt~~vi~~lE~~lGkPVl-sSN 213 (239)
T TIGR02990 189 CTAL-RAATCAQRIEQAIGKPVV-TSN 213 (239)
T ss_pred CCCc-hhHHHHHHHHHHHCCCEE-EHH
Confidence 9962 245778888888889974 344
No 167
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=78.00 E-value=66 Score=30.77 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCCeEE-Eec---CCCHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLA-FET---IPNKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~-~ET---~~~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
...++.+.++|+|+|. ++. +-+.++-+ .+++.+++.+.+.|++ -++ . |+ ...+..+.
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c-g-------~~--~~~~~~~~ 257 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVI-LFG-K-------GA--GELLEAMA 257 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc-C-------Cc--HHHHHHHH
Confidence 4456666779999885 553 33444433 2344554432123333 332 1 22 12344555
Q ss_pred hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe---EEe
Q 020275 231 KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK---LIG 307 (328)
Q Consensus 231 ~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---iiG 307 (328)
+ .++++++++-..+ + +..++..+.-+.++.|- ++. -+. .++++..+.+++.++.+.. |+.
T Consensus 258 ~-~~~~~is~d~~~d--l----~~~k~~~g~~~~i~Gni----~p~---ll~---gt~e~i~~~~~~~i~~~~~~gfIl~ 320 (346)
T PRK00115 258 E-TGADVVGLDWTVD--L----AEARRRVGDKKALQGNL----DPA---VLL---APPEAIEEEVRAILDGGGGPGHIFN 320 (346)
T ss_pred h-cCCCEEeeCCCCC--H----HHHHHHcCCCeEEEeCC----Chh---Hhc---CCHHHHHHHHHHHHHHhCCCCeeee
Confidence 4 4678888886521 2 23333344446666763 221 111 1588899999999886533 554
Q ss_pred -ecC---CCChHHHHHHHHHHhcC
Q 020275 308 -GCC---RTTPSTIQAVSKVLKER 327 (328)
Q Consensus 308 -GCC---Gt~P~hI~al~~~l~~~ 327 (328)
||. +|.++.|+++-++++..
T Consensus 321 ~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 321 LGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred cCCcCCCCcCHHHHHHHHHHHHHh
Confidence 454 67899999999988754
No 168
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=77.83 E-value=59 Score=30.14 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+.+..++.-+.++++|.+-|..+--..-.. .++.+|-.++.+.+++.+. ++-.+|+|
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~-----------------~~~~vi~g- 76 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAA-----------------GRVPVIAG- 76 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHT-----------------TSSEEEEE-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHcc-----------------CceEEEec-
Confidence 356788888888899999777654333222 3455666677665554431 22234454
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec----CCCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET----IPNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET----~~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
+|.. +.++. .++++...+.|+|.+++-. -++.+++..-.+.+.+.. ++|+++-
T Consensus 77 v~~~------------------st~~~----i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~-~~pi~iY 133 (289)
T PF00701_consen 77 VGAN------------------STEEA----IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT-DLPIIIY 133 (289)
T ss_dssp EESS------------------SHHHH----HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-SSEEEEE
T ss_pred Ccch------------------hHHHH----HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhc-CCCEEEE
Confidence 5442 23333 4566667789999887642 246667666666555554 7999975
Q ss_pred EE
Q 020275 208 FS 209 (328)
Q Consensus 208 ~~ 209 (328)
-.
T Consensus 134 n~ 135 (289)
T PF00701_consen 134 NN 135 (289)
T ss_dssp EB
T ss_pred EC
Confidence 53
No 169
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.68 E-value=59 Score=30.04 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCC-----------------------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCC
Q 020275 163 RRRLQVLVESGPDLLAFETIPN-----------------------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~-----------------------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G 219 (328)
.+.++.|.++|||+|=+- ||. +++.-..++.+++...+.|+++--.. +. - ..
T Consensus 29 ~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~-N~-i--~~ 103 (258)
T PRK13111 29 LEIIKALVEAGADIIELG-IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYY-NP-I--FQ 103 (258)
T ss_pred HHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecc-cH-H--hh
Confidence 567888999999998443 332 22333344445533346887633332 21 1 11
Q ss_pred CCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeE-EEEeCCCCc----cCCcccccc---C-----C-CC
Q 020275 220 ESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAI-VVYPNSGEV----WDGRAKKWL---P-----S-KC 285 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl-~~ypN~g~~----~d~~~~~~~---~-----~-~~ 285 (328)
-.++..++.+.+ .+++++-|+=-.++....+++.++++.-.++ ++-||.-.- .......|+ . + +.
T Consensus 104 ~G~e~f~~~~~~-aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~ 182 (258)
T PRK13111 104 YGVERFAADAAE-AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARS 182 (258)
T ss_pred cCHHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc
Confidence 234566776665 4788888876667777777777766533343 366776310 000011121 0 0 00
Q ss_pred CChhHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHHH
Q 020275 286 LGDGKFESFATRWRDS-GAKLIGGCCRTTPSTIQAVSKVL 324 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~l 324 (328)
..+....+++++..+. +..++=|=+=.+|+|++++.+..
T Consensus 183 ~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~A 222 (258)
T PRK13111 183 ADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVA 222 (258)
T ss_pred CCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhC
Confidence 1223344555555443 44443334445899999988753
No 170
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.67 E-value=25 Score=34.06 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCeEEEecC----------CCHHHHHHHHHHHHhcCCCccEEEEEEe-cCCCCCCCCCCHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLLAFETI----------PNKLEAQALVELLEEENIQIPSWICFSS-VDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~----------~~~~E~~a~~~~~~~~~~~~pv~is~~~-~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.+.+..+.+.|+|.+.+--- .+..|++.+++.+.+.+ +.+++.+.. .-+. .-..+.+.++.+.+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~---~~~~~~~~l~~l~e 90 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHND---ELETLERYLDRLVE 90 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccc---hhhHHHHHHHHHHH
Confidence 34666777889999987622 46678999999999886 555555531 1111 11235566766655
Q ss_pred cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCc-----cCC-ccccccCCCCCChhHHHHHHHHH--HHcCC
Q 020275 232 SGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEV-----WDG-RAKKWLPSKCLGDGKFESFATRW--RDSGA 303 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~-----~d~-~~~~~~~~~~~~~~~~~~~~~~~--~~~G~ 303 (328)
.++++|-++ .|- +..++++.....+..+..+.|.-+. |.. ....|+..+.++.++..+..++. .+.=+
T Consensus 91 -~GvDaviv~--Dpg-~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEv 166 (347)
T COG0826 91 -LGVDAVIVA--DPG-LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEV 166 (347)
T ss_pred -cCCCEEEEc--CHH-HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEE
Confidence 578887765 332 2234444333234455666665421 110 01223333344566666655554 33335
Q ss_pred eEEeecC
Q 020275 304 KLIGGCC 310 (328)
Q Consensus 304 ~iiGGCC 310 (328)
-+-|+||
T Consensus 167 fVhGalc 173 (347)
T COG0826 167 FVHGALC 173 (347)
T ss_pred EEecchh
Confidence 5667777
No 171
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=77.42 E-value=77 Score=32.22 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCeEEEe--------c-------CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFE--------T-------IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E--------T-------~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
.++++.+.++|+|+|..- | +|.+..+..+.+++++. +.|+|. +|-.. +..+++.
T Consensus 293 ~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~vIa------dGGi~---~~~di~k 361 (495)
T PTZ00314 293 ADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER--GVPCIA------DGGIK---NSGDICK 361 (495)
T ss_pred HHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc--CCeEEe------cCCCC---CHHHHHH
Confidence 457778889999999642 1 35555445555666655 478773 22222 3356666
Q ss_pred HHHh
Q 020275 228 IINK 231 (328)
Q Consensus 228 ~~~~ 231 (328)
.+..
T Consensus 362 Ala~ 365 (495)
T PTZ00314 362 ALAL 365 (495)
T ss_pred HHHc
Confidence 6653
No 172
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.31 E-value=73 Score=35.95 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEec----CCCCCCCCCCHH---HHHHHHHhcCCce
Q 020275 165 RLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSV----DGENAPSGESFK---ECLDIINKSGKVN 236 (328)
Q Consensus 165 qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~----~~~~l~~G~~~~---~~~~~~~~~~~~~ 236 (328)
-++...+.|+|+| +|-.+.++..++.+++++++.+ .-+.++++.. |..+. -.++. +.+..+.+ .+++
T Consensus 632 ~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g--~~~~~~i~ytg~~~d~~~~--~~~~~~~~~~a~~l~~-~Ga~ 706 (1146)
T PRK12999 632 FVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETG--KIAEAAICYTGDILDPARA--KYDLDYYVDLAKELEK-AGAH 706 (1146)
T ss_pred HHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcC--CeEEEEEEEEecCCCCCCC--CCCHHHHHHHHHHHHH-cCCC
Confidence 3666778999998 5667888888888999999876 4444555544 22221 12443 44444443 4667
Q ss_pred EEEECCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 237 AVGINCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 237 ~iGvNC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.|.|-=+ .|..+..+++.+++..+.||.+.-.
T Consensus 707 ~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~H 742 (1146)
T PRK12999 707 ILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTH 742 (1146)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 6666543 4999999999999888888877554
No 173
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=77.18 E-value=48 Score=28.71 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEE-EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWIC-FSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
+++.+.++|+|++.+=..+...++..+++.+++.+ +++.+. +++ .+..+....+. .+++.++++=.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~---------~t~~e~~~~~~--~~~d~v~~~~~ 135 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGV---------EDPEKRAKLLK--LGVDIVILHRG 135 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCC---------CCHHHHHHHHH--CCCCEEEEcCc
Confidence 55778889999999766666666788888888775 777765 432 13455655333 35677777421
Q ss_pred -C-----hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEe
Q 020275 244 -P-----PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIG 307 (328)
Q Consensus 244 -~-----p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 307 (328)
. .......++++++..+.|+.+ .+| .+++ .++++.+.|+..++
T Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~--~GG---------------I~~~----~i~~~~~~Gad~vv 184 (202)
T cd04726 136 IDAQAAGGWWPEDDLKKVKKLLGVKVAV--AGG---------------ITPD----TLPEFKKAGADIVI 184 (202)
T ss_pred ccccccCCCCCHHHHHHHHhhcCCCEEE--ECC---------------cCHH----HHHHHHhcCCCEEE
Confidence 1 123345555555433345433 222 2343 35678888986543
No 174
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=77.06 E-value=13 Score=32.17 Aligned_cols=88 Identities=20% Similarity=0.296 Sum_probs=56.1
Q ss_pred CCCceEEEeecCCcccCcCCCCCCCCCCCCC----------------------CCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 020275 122 NYNRALVAASIGSYGAYLADGSEYSGNYGPG----------------------VDLEKLKDFHRRRLQVLVESGPDLLAF 179 (328)
Q Consensus 122 ~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~----------------------~~~~e~~~~h~~qi~~l~~~gvD~i~~ 179 (328)
.+.+++++|.=|++.+...=.+|..|.|..+ ..+|+ -|.+|++++.+.|==+|.+
T Consensus 40 ~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~---vFsRqveA~g~~GDvLigI 116 (176)
T COG0279 40 NGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDE---VFSRQVEALGQPGDVLIGI 116 (176)
T ss_pred cCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHH---HHHHHHHhcCCCCCEEEEE
Confidence 4678999988887664432223444444211 13443 4788999998877445667
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC
Q 020275 180 ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGEN 215 (328)
Q Consensus 180 ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~ 215 (328)
=|-.+-..+.-+++.+++.+ . .+|.++=++.++
T Consensus 117 STSGNS~nVl~Ai~~Ak~~g--m-~vI~ltG~~GG~ 149 (176)
T COG0279 117 STSGNSKNVLKAIEAAKEKG--M-TVIALTGKDGGK 149 (176)
T ss_pred eCCCCCHHHHHHHHHHHHcC--C-EEEEEecCCCcc
Confidence 78888888788888888765 2 345666555554
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=77.03 E-value=72 Score=30.67 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=51.2
Q ss_pred eEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC----
Q 020275 236 NAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR---- 311 (328)
Q Consensus 236 ~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG---- 311 (328)
.-|.+.|+..+.+.+.++..++. ...+.+.+=- ....+++.+.++++++.+.|+..|. .|-
T Consensus 105 iri~~~~~e~~~~~~~i~~ak~~-G~~v~~~l~~-------------a~~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G~ 169 (337)
T PRK08195 105 VRVATHCTEADVSEQHIGLAREL-GMDTVGFLMM-------------SHMAPPEKLAEQAKLMESYGAQCVY-VVDSAGA 169 (337)
T ss_pred EEEEEecchHHHHHHHHHHHHHC-CCeEEEEEEe-------------ccCCCHHHHHHHHHHHHhCCCCEEE-eCCCCCC
Confidence 34678888877788888887764 2233222210 0113688899999999999997765 332
Q ss_pred CChHHHHHHHHHHhc
Q 020275 312 TTPSTIQAVSKVLKE 326 (328)
Q Consensus 312 t~P~hI~al~~~l~~ 326 (328)
.+|+.++.+-+.++.
T Consensus 170 ~~P~~v~~~v~~l~~ 184 (337)
T PRK08195 170 LLPEDVRDRVRALRA 184 (337)
T ss_pred CCHHHHHHHHHHHHH
Confidence 389999888777653
No 176
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=76.40 E-value=44 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHH
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQ 189 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~ 189 (328)
.++.+.+.|+|.+.++.-.++.|++
T Consensus 236 ~l~~~~~~g~d~~~~d~~~dl~e~~ 260 (326)
T cd03307 236 ILEYIAQCGFDGISVDEKVDVKTAK 260 (326)
T ss_pred HHHHHHHcCCCeecccccCCHHHHH
Confidence 4566777899999988888887754
No 177
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=76.31 E-value=79 Score=30.80 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
-+|+...++-.++...|.|+|.-.-=.++...+ +.++-.+....+++.|. + + ++.++.++-
T Consensus 138 L~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~-----p~~eRv~~v~~av~~a~---~----e-------TG~~~~y~~ 198 (364)
T cd08210 138 LSAAELAELAYAFALGGIDIIKDDHGLADQPFA-----PFEERVKACQEAVAEAN---A----E-------TGGRTLYAP 198 (364)
T ss_pred CCHHHHHHHHHHHHhcCCCeeecCccccCccCC-----CHHHHHHHHHHHHHHHH---h----h-------cCCcceEEE
Confidence 357888999999999999999544322222211 11222233333333332 1 2 344455555
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK 185 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~ 185 (328)
.|.- +.+|+ .++++...+.|+|.+++--+..-
T Consensus 199 Nita-------------------~~~em----~~ra~~a~~~Ga~~vMv~~~~~G 230 (364)
T cd08210 199 NVTG-------------------PPTQL----LERARFAKEAGAGGVLIAPGLTG 230 (364)
T ss_pred ecCC-------------------CHHHH----HHHHHHHHHcCCCEEEeecccch
Confidence 4421 11233 55667777899999998866654
No 178
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=76.26 E-value=60 Score=29.34 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCeEEEecCCC---------------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---HH
Q 020275 164 RRLQVLVESGPDLLAFETIPN---------------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFK---EC 225 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~---------------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~ 225 (328)
+.++.+.+.|+|.+.+=.-.+ ..++...++.+++.+ .++.+++..-... ..++. +.
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~----~~~~~~l~~~ 151 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGC----KTDPEYVLEV 151 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCC----CCCHHHHHHH
Confidence 356677788999886654444 677777888888775 7777777421110 14444 44
Q ss_pred HHHHHhcCCceEEEEC----CCChhhhHHHHHHHHhhcC-CeEEEEeC
Q 020275 226 LDIINKSGKVNAVGIN----CAPPQFVENLICYFKELTK-KAIVVYPN 268 (328)
Q Consensus 226 ~~~~~~~~~~~~iGvN----C~~p~~~~~~l~~l~~~~~-~pl~~ypN 268 (328)
++.+.+ .++..|.+. +..|+.+..+++.+++..+ .++.+...
T Consensus 152 ~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~H 198 (265)
T cd03174 152 AKALEE-AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTH 198 (265)
T ss_pred HHHHHH-cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 444443 355555442 2359999999999988766 67776553
No 179
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=76.23 E-value=66 Score=29.86 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEE-ec-----CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAF-ET-----IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
++.+.+ +++++.+.+.|||.|++ -| .-+.+|-+.+++.+.+.. + ++++.+ .+.++.+++
T Consensus 17 iD~~~~----~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~-~vi~gv---------g~~~~~~ai 81 (279)
T cd00953 17 IDKEKF----KKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D-KVIFQV---------GSLNLEESI 81 (279)
T ss_pred cCHHHH----HHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C-CEEEEe---------CcCCHHHHH
Confidence 565554 67788888999999866 22 335678888888776654 2 455443 235567777
Q ss_pred HHHHh--cCCceEEEECCC------ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 227 DIINK--SGKVNAVGINCA------PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 227 ~~~~~--~~~~~~iGvNC~------~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+.++. ..+++++.+=-- +++.+....+.+.+ +.|+++|=|
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~ 129 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNY 129 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeC
Confidence 65533 257777766221 12445555566666 789999944
No 180
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=76.21 E-value=65 Score=29.77 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCeEEEec-C----------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 162 HRRRLQVLVESGPDLLAFET-I----------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET-~----------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
+.+.++.+.+.|+|.|-+-. - .+...+..+++.+++.- +.|+++-+.... +-+...+.++.+.
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-----~~~~~~~~a~~l~ 186 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYF-----DLEDIVELAKAAE 186 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCC-----CHHHHHHHHHHHH
Confidence 35567777778999886542 1 24456677788887653 689988876321 1012334455554
Q ss_pred hcCCceEEEE
Q 020275 231 KSGKVNAVGI 240 (328)
Q Consensus 231 ~~~~~~~iGv 240 (328)
+ .++++|-+
T Consensus 187 ~-~Gad~i~~ 195 (289)
T cd02810 187 R-AGADGLTA 195 (289)
T ss_pred H-cCCCEEEE
Confidence 4 46776655
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=76.07 E-value=90 Score=31.33 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
++|.+.++.+.+.|+|.|.+- |. -++.++..+++++++.- ++| |.|.+=++ .|..+..++..+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt----~GlA~AN~laAi 219 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVP--LEVHTHAT----SGIAEMTYLKAI 219 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCe--EEEEecCC----CCcHHHHHHHHH
Confidence 557888888999999998776 33 35688888888888652 355 45554332 344444444444
No 182
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.91 E-value=48 Score=28.13 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHhccceeecCC
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSS 75 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnT 75 (328)
+.+.++++.+..+++|++.|.++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 788899999999999999988884
No 183
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=75.63 E-value=37 Score=30.29 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
+.|.+.++.+++.|+|++=+|--...+.... ....+.. +.++++|..- -..+++-..+.+.++.+.. .+++.+=
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~~--~~~iI~S~H~--f~~tp~~~~l~~~~~~~~~-~gadivK 148 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARKG--GTKIILSYHD--FEKTPSWEELIELLEEMQE-LGADIVK 148 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHHT--TSEEEEEEEE--SS---THHHHHHHHHHHHH-TT-SEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhhC--CCeEEEEecc--CCCCCCHHHHHHHHHHHHh-cCCCeEE
Confidence 3456667777778899999997644333322 3333333 5899999982 2222333335555555543 4666666
Q ss_pred ECCC--ChhhhHHHHHHHHhh---cCCeEEEEeCC
Q 020275 240 INCA--PPQFVENLICYFKEL---TKKAIVVYPNS 269 (328)
Q Consensus 240 vNC~--~p~~~~~~l~~l~~~---~~~pl~~ypN~ 269 (328)
+-|. +++....+++..... .+.|+++++-+
T Consensus 149 ia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 149 IAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 6554 466655555544433 36899988765
No 184
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=75.42 E-value=99 Score=32.24 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
++|.+.++.+.+.|+|.|.+- |. -.+.++..++.++++.- ++| |.+.+=++ .|..+..++..+.+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAv~a 221 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLP--VQLHSHCT----SGLAPMTYLKAVEA 221 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCe--EEEEEcCC----CCcHHHHHHHHHHh
Confidence 567888999999999998776 33 35688888898888652 355 45554332 45556666555543
No 185
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=75.18 E-value=77 Score=30.07 Aligned_cols=135 Identities=15% Similarity=0.198 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCeEE-Ee---cCCCHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLA-FE---TIPNKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~-~E---T~~~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
.+.++.+.++|+|+|. ++ ++-+.++-+ -+++.+++.+.+.|++ -++ .|+. ..+..+.
T Consensus 180 ~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c--------g~~~--~~~~~~~ 248 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVI-LFA--------KGAG--GLLEDLA 248 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc--------CCCH--HHHHHHH
Confidence 4456666678999875 44 344444444 3344555442124443 232 1222 4566665
Q ss_pred hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe----EE
Q 020275 231 KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK----LI 306 (328)
Q Consensus 231 ~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----ii 306 (328)
+ .++.+++++-.. .+ +..++..+..+.+..|- ++. -+.. ++++..+.+++.++.+.. |+
T Consensus 249 ~-~~~~~~s~d~~~--dl----~e~k~~~g~~~~i~Gni----~p~---~l~~---~~e~i~~~v~~~l~~~~~~~gfIl 311 (335)
T cd00717 249 Q-LGADVVGLDWRV--DL----DEARKRLGPKVALQGNL----DPA---LLYA---PKEAIEKEVKRILKAFGGAPGHIF 311 (335)
T ss_pred h-cCCCEEEeCCCC--CH----HHHHHHhCCCeEEEeCC----Chh---hhcC---CHHHHHHHHHHHHHHhCcCCCcee
Confidence 5 367788777652 12 22333344445566663 111 1111 468899999999887654 55
Q ss_pred e-ecC---CCChHHHHHHHHHHh
Q 020275 307 G-GCC---RTTPSTIQAVSKVLK 325 (328)
Q Consensus 307 G-GCC---Gt~P~hI~al~~~l~ 325 (328)
. ||. +|.++.|+++.++++
T Consensus 312 ~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 312 NLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred ecCCcCCCCcCHHHHHHHHHHHh
Confidence 4 455 688999999998875
No 186
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=75.13 E-value=78 Score=30.15 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEec-CCC---------HHHHHHHHHHHHhcC----CCccEEEEEEecCCCCCCCCCCH
Q 020275 157 KLKDFHRRRLQVLVESGPDLLAFET-IPN---------KLEAQALVELLEEEN----IQIPSWICFSSVDGENAPSGESF 222 (328)
Q Consensus 157 e~~~~h~~qi~~l~~~gvD~i~~ET-~~~---------~~E~~a~~~~~~~~~----~~~pv~is~~~~~~~~l~~G~~~ 222 (328)
+..+.|...++.+.. .+|+|-+.. -|+ .+.+..+++++++.- .++|+++-++... +-+.+
T Consensus 145 ~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-----~~~~~ 218 (327)
T cd04738 145 DAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-----SDEEL 218 (327)
T ss_pred ccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-----CHHHH
Confidence 334455666666653 589887653 232 356667777777642 1389999996421 11234
Q ss_pred HHHHHHHHhcCCceEEE-ECCC
Q 020275 223 KECLDIINKSGKVNAVG-INCA 243 (328)
Q Consensus 223 ~~~~~~~~~~~~~~~iG-vNC~ 243 (328)
.+.++.+.+ .++++|- .|.+
T Consensus 219 ~~ia~~l~~-aGad~I~~~n~~ 239 (327)
T cd04738 219 EDIADVALE-HGVDGIIATNTT 239 (327)
T ss_pred HHHHHHHHH-cCCcEEEEECCc
Confidence 555555554 4677765 4543
No 187
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.02 E-value=66 Score=29.24 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcC-CceEEEEC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSG-KVNAVGIN 241 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~-~~~~iGvN 241 (328)
...++.+.++|+|.+++=-.| .+|..-.++.+++.+ +...+-++ ..++.+..-..+.... -+..+++|
T Consensus 94 ~~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~--------P~T~~~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVA--------PTTPDERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeC--------CCCCHHHHHHHHhhCCCCEEEEeCC
Confidence 456777889999999875554 468888889999886 54444443 3344443333333122 23445655
Q ss_pred CCC------hhhhHHHHHHHHhhcCCeEEE
Q 020275 242 CAP------PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 242 C~~------p~~~~~~l~~l~~~~~~pl~~ 265 (328)
=+. +..+...++.+++..+.|+.+
T Consensus 163 g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 163 GVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 531 345667788888877778766
No 188
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=74.73 E-value=73 Score=29.60 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=64.6
Q ss_pred CceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 020275 124 NRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 124 ~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.+.+|.+.+ |++. |. .+.++.. +.-.+.+.++|+|.+=+|--. |....++++.+.+ .|
T Consensus 76 ~~~~vv~Dm-Pf~s-----------y~--~s~e~av---~nA~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~G--IP 133 (261)
T PF02548_consen 76 PNAFVVADM-PFGS-----------YQ--ASPEQAV---RNAGRLMKEAGADAVKLEGGA---EIAETIKALVDAG--IP 133 (261)
T ss_dssp TSSEEEEE---TTS-----------ST--SSHHHHH---HHHHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHTT----
T ss_pred CCceEEecC-Cccc-----------cc--CCHHHHH---HHHHHHHHhcCCCEEEeccch---hHHHHHHHHHHCC--Cc
Confidence 457888888 5554 31 3555443 333344445999999999654 3344555665554 99
Q ss_pred EEEEEEecCC------CCCCCCCCHHHHHHHHHh-----cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 204 SWICFSSVDG------ENAPSGESFKECLDIINK-----SGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 204 v~is~~~~~~------~~l~~G~~~~~~~~~~~~-----~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
|+--+-+... +.=.-|.+.+++.+.++. ..++.++-+.|++. .+-+.+.+..+.|.+-
T Consensus 134 V~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~----~la~~It~~l~IPtIG 202 (261)
T PF02548_consen 134 VMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPA----ELAKAITEALSIPTIG 202 (261)
T ss_dssp EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBH----HHHHHHHHHSSS-EEE
T ss_pred EEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHH----HHHHHHHHhCCCCEEe
Confidence 9877765443 222356676666554432 25889999999974 4445555556777653
No 189
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=74.67 E-value=33 Score=32.06 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHH
Q 020275 140 ADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKL 186 (328)
Q Consensus 140 ~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~ 186 (328)
.+|.-|-..+ .+.+....+.++.+..|..-|+|+|+||+|-+.-
T Consensus 243 S~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~W 286 (305)
T COG5309 243 SDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDDW 286 (305)
T ss_pred CCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeeccccc
Confidence 4454454444 4778888999999999999999999999997753
No 190
>PLN02433 uroporphyrinogen decarboxylase
Probab=74.47 E-value=83 Score=30.14 Aligned_cols=135 Identities=11% Similarity=0.183 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCCeE-EEec---CCCHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 164 RRLQVLVESGPDLL-AFET---IPNKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 164 ~qi~~l~~~gvD~i-~~ET---~~~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
+.++.+.++|+|++ +++. +-+.++-+ .+++.+++...+.|++ -+.| |.+ ..+..+.+
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~i-lh~c--------G~~--~~~~~~~~ 251 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLI-LYAN--------GSG--GLLERLAG 251 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEeC--------CCH--HHHHHHHh
Confidence 44555667899987 4442 33334433 2344555431134544 3443 332 34555554
Q ss_pred cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe---EEee
Q 020275 232 SGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK---LIGG 308 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---iiGG 308 (328)
.+++++++--.. .+..+ ++..+..+.+..|-- +. .+. -++++..+.+++.++.+.. |+.-
T Consensus 252 -~~~~~i~~d~~~--dl~e~----~~~~g~~~~l~GNi~----p~---ll~---gt~e~i~~~v~~~i~~~~~~g~Il~~ 314 (345)
T PLN02433 252 -TGVDVIGLDWTV--DMADA----RRRLGSDVAVQGNVD----PA---VLF---GSKEAIEKEVRDVVKKAGPQGHILNL 314 (345)
T ss_pred -cCCCEEEcCCCC--CHHHH----HHHhCCCeEEEeCCC----ch---hhC---CCHHHHHHHHHHHHHHcCCCCeEEec
Confidence 366666654331 22222 222344455666632 11 111 2688899999999886543 6665
Q ss_pred cCC----CChHHHHHHHHHHhc
Q 020275 309 CCR----TTPSTIQAVSKVLKE 326 (328)
Q Consensus 309 CCG----t~P~hI~al~~~l~~ 326 (328)
.|| |.|++|+++.++++.
T Consensus 315 Gc~i~~~tp~eNi~a~v~av~~ 336 (345)
T PLN02433 315 GHGVLVGTPEENVAHFFDVARE 336 (345)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 555 678999999998875
No 191
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.36 E-value=26 Score=32.78 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+++...++.|+|+|.+.+| ++++++.+++..+... ..+.+-.+ .|-+++.+.+++. .++++|.+-+
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~--~~~~ieAs--------GgIt~~ni~~ya~--~GvD~IsvG~ 258 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANY--PHVLLEAS--------GNITLENINAYAK--SGVDAISSGS 258 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 3455566789999999886 8888888888654321 12333332 3556776666654 4778777766
No 192
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=74.36 E-value=69 Score=33.42 Aligned_cols=125 Identities=15% Similarity=0.078 Sum_probs=73.0
Q ss_pred CChH-HHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 51 KQPH-LVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 51 ~~Pe-~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
..|| .|+..-+...+.|.||++.++.=-. + +..+.+++.++++ + ..+-
T Consensus 92 ~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd-------------~-~n~~~~i~~~k~~---------------G--~~~~ 140 (596)
T PRK14042 92 NYADDVVRAFVKLAVNNGVDVFRVFDALND-------------A-RNLKVAIDAIKSH---------------K--KHAQ 140 (596)
T ss_pred cCChHHHHHHHHHHHHcCCCEEEEcccCcc-------------h-HHHHHHHHHHHHc---------------C--CEEE
Confidence 3454 5555666678899999998863211 1 2334456666543 2 2344
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcCCCccEEE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
|+|-- ++.+ ..+. ++|.+.++.+.+.|+|.|.+-.+ -.+.++...+.++++.- ++|+
T Consensus 141 ~~i~y-----------t~sp--~~t~----e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi-- 200 (596)
T PRK14042 141 GAICY-----------TTSP--VHTL----DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPV-- 200 (596)
T ss_pred EEEEe-----------cCCC--CCCH----HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEE--
Confidence 55422 2211 1122 56788888899999999977633 45678888888888652 4554
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHH
Q 020275 207 CFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
.|.+-++ .|..+...+..+.
T Consensus 201 ~~H~Hnt----~Gla~an~laAie 220 (596)
T PRK14042 201 HLHSHST----SGLASICHYEAVL 220 (596)
T ss_pred EEEeCCC----CCcHHHHHHHHHH
Confidence 5544222 4555555555554
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.09 E-value=71 Score=31.98 Aligned_cols=66 Identities=9% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCeEEEecC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.++++.|.++|+|+|.+-+- .+-.-+...++.+++.-.++|+++. +..+.+++...++. ++++|.+
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G----------~v~t~~~a~~l~~a--Gad~i~v 292 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAG----------NVATAEQAKALIDA--GADGLRV 292 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEE----------eCCCHHHHHHHHHh--CCCEEEE
Confidence 56888999999999998752 2333445556666655236888872 34566777766653 5677654
No 194
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=73.90 E-value=76 Score=29.42 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhccceeecC-CcC----------CChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 020275 54 HLVKRVHLEYLEAGADILVTS-SYQ----------ATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHN 122 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~Tn-Ty~----------as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~ 122 (328)
+.-.++-+...++|||+|.-- =|. ....+.-+.|++. ++..++.++.+.+. .
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~-------~~~~~~~~~ir~~~----------~ 86 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTL-------EKIFELVKEIRKKE----------P 86 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--H-------HHHHHHHHHHHHHC----------T
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhccC----------C
Confidence 567778888889999988732 121 1111111234432 33455666666432 2
Q ss_pred CCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q 020275 123 YNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDF-HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQ 201 (328)
Q Consensus 123 ~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~-h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~ 201 (328)
..++++-+-. +.+..+ ..+-++.+.++|+|.+++=-+|- +|.....+++++.+
T Consensus 87 ~~pivlm~Y~-----------------------N~i~~~G~e~F~~~~~~aGvdGlIipDLP~-ee~~~~~~~~~~~g-- 140 (259)
T PF00290_consen 87 DIPIVLMTYY-----------------------NPIFQYGIERFFKEAKEAGVDGLIIPDLPP-EESEELREAAKKHG-- 140 (259)
T ss_dssp SSEEEEEE-H-----------------------HHHHHH-HHHHHHHHHHHTEEEEEETTSBG-GGHHHHHHHHHHTT--
T ss_pred CCCEEEEeec-----------------------cHHhccchHHHHHHHHHcCCCEEEEcCCCh-HHHHHHHHHHHHcC--
Confidence 3455554422 222222 34456777889999999777764 77788888888776
Q ss_pred ccEEEEEEecCCCCCCCCCCHHHHHHHH-HhcCCceE-EEECCC------ChhhhHHHHHHHHhhcCCeEEE
Q 020275 202 IPSWICFSSVDGENAPSGESFKECLDII-NKSGKVNA-VGINCA------PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 202 ~pv~is~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~-iGvNC~------~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
+..+ .|.. ..++ .+-+..+ ....+... +..+-+ .+..+...++.+++.++.|+.+
T Consensus 141 l~~I-~lv~-------p~t~-~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 141 LDLI-PLVA-------PTTP-EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp -EEE-EEEE-------TTS--HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEE
T ss_pred CeEE-EEEC-------CCCC-HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEE
Confidence 5433 3322 1233 3334433 33333332 222332 1567888999999998889866
No 195
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=73.82 E-value=1.2e+02 Score=31.61 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++|.+.++.+.+.|+|.|.+- |. -.+.++..++.++++.- ++| |.+.+=++ .|..+..++..+.
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAve 215 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLP--VHLHSHAT----TGMAEMALLKAIE 215 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 567888888999999998765 33 45688888888888652 355 45555333 3444454444443
No 196
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.72 E-value=42 Score=31.67 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhccceeecCCcCCChh
Q 020275 54 HLVKRVHLEYLEAGADILVTSSYQATIP 81 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~TnTy~as~~ 81 (328)
+...+.|.++-+.|+-+|+|-.-..++.
T Consensus 33 ~~~~~~y~~ra~gg~glii~e~~~v~~~ 60 (327)
T cd02803 33 DELIEYYEERAKGGVGLIITEAAYVDPE 60 (327)
T ss_pred HHHHHHHHHHhCcCCcEEEECcEEEcCc
Confidence 5666677777777887766554444433
No 197
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.60 E-value=92 Score=30.26 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=90.5
Q ss_pred cCCChHHHHHHHHHHHHhccceeecCCcC--CChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCce
Q 020275 49 LIKQPHLVKRVHLEYLEAGADILVTSSYQ--ATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRA 126 (328)
Q Consensus 49 ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~ 126 (328)
-++.++.+.++=+.--++|+.++.-..|. +|+..+. |+. ..+.++.+++++++ ..
T Consensus 110 sIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~--G~g--------~~gl~~L~~~~~e~-------------Gl 166 (352)
T PRK13396 110 SVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQ--GHG--------ESALELLAAAREAT-------------GL 166 (352)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccC--Cch--------HHHHHHHHHHHHHc-------------CC
Confidence 37888999888888888999999977774 3444332 222 34455666666653 22
Q ss_pred EEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEE
Q 020275 127 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 127 ~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
.|.-++ + + ..+++.+.+. +|++.+-.....+ -..++++.++ ++||++
T Consensus 167 ~~~tev----------------~----d--------~~~v~~~~~~-~d~lqIga~~~~n--~~LL~~va~t--~kPVll 213 (352)
T PRK13396 167 GIITEV----------------M----D--------AADLEKIAEV-ADVIQVGARNMQN--FSLLKKVGAQ--DKPVLL 213 (352)
T ss_pred cEEEee----------------C----C--------HHHHHHHHhh-CCeEEECcccccC--HHHHHHHHcc--CCeEEE
Confidence 233322 1 1 3466666655 8888766543332 2234445444 588887
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC-----CC--h--hhhHHHHHHHHhhcCCeEEEEeC
Q 020275 207 CFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC-----AP--P--QFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC-----~~--p--~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+= |.-.+=+.+..+++.+....+...+.+.| .+ | ..=...+..+++.+..|+++=|.
T Consensus 214 k~-----G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps 279 (352)
T PRK13396 214 KR-----GMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS 279 (352)
T ss_pred eC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence 64 21112223445666665444456777888 31 3 12234556666666678877655
No 198
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.57 E-value=68 Score=28.74 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
++++...++|+||++ .|...+ .+++.+++. +.|++ +.-.++.|+....+ .+...|-+
T Consensus 78 ~~a~~a~~aGA~Fiv---sP~~~~--~vi~~a~~~--~i~~i-----------PG~~TptEi~~a~~--~Ga~~vKl--- 134 (212)
T PRK05718 78 EQLAQAIEAGAQFIV---SPGLTP--PLLKAAQEG--PIPLI-----------PGVSTPSELMLGME--LGLRTFKF--- 134 (212)
T ss_pred HHHHHHHHcCCCEEE---CCCCCH--HHHHHHHHc--CCCEe-----------CCCCCHHHHHHHHH--CCCCEEEE---
Confidence 577788889999997 555555 566667665 37766 12246677666554 35555555
Q ss_pred Chhh-h--HHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEee
Q 020275 244 PPQF-V--ENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGG 308 (328)
Q Consensus 244 ~p~~-~--~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGG 308 (328)
.|.. + ...++.++.-.+. +-+.|-+| .++ +.+.+|++.|..++||
T Consensus 135 FPa~~~gg~~~lk~l~~p~p~-~~~~ptGG---------------V~~----~ni~~~l~ag~v~~vg 182 (212)
T PRK05718 135 FPAEASGGVKMLKALAGPFPD-VRFCPTGG---------------ISP----ANYRDYLALPNVLCIG 182 (212)
T ss_pred ccchhccCHHHHHHHhccCCC-CeEEEeCC---------------CCH----HHHHHHHhCCCEEEEE
Confidence 3322 2 4566666543221 22224443 344 4556688899656666
No 199
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=73.57 E-value=49 Score=31.62 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC------HHHHHHHHHhcCCceEE
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES------FKECLDIINKSGKVNAV 238 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~------~~~~~~~~~~~~~~~~i 238 (328)
+++..+ .++|++ |+++++-++.+-+++++.++...|++-+...| ++.|.. +.+.+..+.+..++..+
T Consensus 86 ei~~vv-~~~Dvs---~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D---lreG~~~~~~~~l~~~V~eI~~lkGi~~v 158 (353)
T COG3457 86 EIEDVV-RKVDVS---TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD---LREGQWGFLIEDLEETVEEIQQLKGIHLV 158 (353)
T ss_pred HHHHHH-HhcCeE---EEecHHHHHHHHHHHHHhCcceeEEEEEEccc---ccCcchhhHHHHHHHHHHHHhcCCCceEE
Confidence 444444 478965 47788889999999998886677887777654 778865 67788877777777777
Q ss_pred EE----CCCC-----hhhhHHHHHH
Q 020275 239 GI----NCAP-----PQFVENLICY 254 (328)
Q Consensus 239 Gv----NC~~-----p~~~~~~l~~ 254 (328)
|+ +|-. |+.+..+++.
T Consensus 159 GlgTnF~Cfg~v~PTp~n~~~ll~~ 183 (353)
T COG3457 159 GLGTNFPCFGDVLPTPENLESLLQG 183 (353)
T ss_pred eeecccccccCcCCCcccHHHHHHH
Confidence 77 7842 5667666643
No 200
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=73.43 E-value=89 Score=35.26 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 159 KDFHRRRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 159 ~~~h~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
.+||.+.++.+.+.|+|.|.+--+ -.+.++..++.++++.- ++|+- +.+=++ .|..+...+..+.
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~--~H~Hdt----~Gla~an~laA~e 755 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIH--FHTHDT----SGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEE--EEECCC----CCcHHHHHHHHHH
Confidence 367888999999999999987643 35578888888888653 56654 443222 4555555555554
No 201
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=73.33 E-value=76 Score=31.75 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCC
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQA 78 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~a 78 (328)
.++..+++- .-+++|+|+|.-.+-+.
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g 247 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHG 247 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCC
Confidence 344444443 67889999999776663
No 202
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=73.28 E-value=85 Score=29.71 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEec----CCCHHH--------HHHHHHHHHhcCCCc-cEEEEEEecCCCCCCCCCCHHH
Q 020275 158 LKDFHRRRLQVLVESGPDLLAFET----IPNKLE--------AQALVELLEEENIQI-PSWICFSSVDGENAPSGESFKE 224 (328)
Q Consensus 158 ~~~~h~~qi~~l~~~gvD~i~~ET----~~~~~E--------~~a~~~~~~~~~~~~-pv~is~~~~~~~~l~~G~~~~~ 224 (328)
+.++..+.++.+.++|+|+|.+-. +-|.+. .+-+++.+++.+ . |+++-. | |.. ..
T Consensus 180 ~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~-c--------G~~-~~ 247 (343)
T PF01208_consen 180 ITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHI-C--------GNT-TP 247 (343)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEE-T--------THG--G
T ss_pred HHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEE-C--------Cch-HH
Confidence 334445567777889999885543 222222 234566666654 4 555433 2 322 23
Q ss_pred HHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 225 CLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 225 ~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
.+..+.+ .+++++.+. ....+..+.+.+. .-+.+..|-- + ...+. -++++..+.+++.++.+..
T Consensus 248 ~~~~l~~-~g~d~~~~~--~~~~~~~~~~~~~----~~~~l~Gni~----~--~~~l~---gt~eei~~~v~~~i~~~~~ 311 (343)
T PF01208_consen 248 ILDDLAD-LGADVLSVD--EKVDLAEAKRKLG----DKIVLMGNID----P--VSLLF---GTPEEIEEEVKRLIEEGLA 311 (343)
T ss_dssp GHHHHHT-SS-SEEEE---TTS-HHHHHHHHT----TSSEEEEEB-----G---GGGG---S-HHHHHHHHHHHHHHTHC
T ss_pred HHHHHHh-cCCCEEEEc--CCCCHHHHHHHhC----CCeEEECCCC----c--ccccc---CCHHHHHHHHHHHHHHhcC
Confidence 5555554 456765553 2223444444432 2233334421 1 01222 2688999999999885433
Q ss_pred -----EEeecC----CCChHHHHHHHHHHhc
Q 020275 305 -----LIGGCC----RTTPSTIQAVSKVLKE 326 (328)
Q Consensus 305 -----iiGGCC----Gt~P~hI~al~~~l~~ 326 (328)
|+|--| +|.|+.|+++.+++++
T Consensus 312 ~~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 312 GGGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp TSSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 788778 5678999999988764
No 203
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=72.82 E-value=77 Score=29.01 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCeEEEecC-------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC---HHHHHHHHHhcC
Q 020275 164 RRLQVLVESGPDLLAFETI-------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES---FKECLDIINKSG 233 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~-------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~~~~~~~~~~ 233 (328)
..++.+++.|+|.+-+.-- ..+.+++.+.+++++. +.|++|-+. .+..++.. .+ +..+++...+ .
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~--g~~liv~~~-~~Gvh~~~-~~~~~~~~~~~~a~~-~ 168 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDW--GVPLLAMMY-PRGPHIDD-RDPELVAHAARLGAE-L 168 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc--CCCEEEEEe-ccCccccc-ccHHHHHHHHHHHHH-H
Confidence 3577788899987655322 1223455555666555 488888443 22223322 22 2233333333 5
Q ss_pred CceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCC
Q 020275 234 KVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRT 312 (328)
Q Consensus 234 ~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt 312 (328)
+++.|++.-.. -...++++.+..+.|+.+- +|.. . .+.+++.+.+.+.++.|+. |=++|.
T Consensus 169 GADyikt~~~~---~~~~l~~~~~~~~iPVva~--GGi~----------~--~~~~~~~~~i~~~~~aGa~--Gia~g~ 228 (258)
T TIGR01949 169 GADIVKTPYTG---DIDSFRDVVKGCPAPVVVA--GGPK----------T--NSDREFLQMIKDAMEAGAA--GVAVGR 228 (258)
T ss_pred CCCEEeccCCC---CHHHHHHHHHhCCCcEEEe--cCCC----------C--CCHHHHHHHHHHHHHcCCc--EEehhh
Confidence 78888876321 1345555555556787552 3320 0 1466788888999999997 666664
No 204
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=72.51 E-value=50 Score=32.65 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
..++...+.|+|+| +|-.+.+...++.+++++++.|...-..||.+...-..+ +...+.+..+.+ .+++.|-|-=
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~---e~yv~~akel~~-~g~DSIciKD 177 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTL---EYYVELAKELLE-MGVDSICIKD 177 (472)
T ss_pred HHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccH---HHHHHHHHHHHH-cCCCEEEeec
Confidence 34555678999998 788999999999999999999866666677765432211 112233333433 4667666654
Q ss_pred C----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 243 A----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 243 ~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
. .|...-.+++.+++..+.|+-+.-.
T Consensus 178 maGlltP~~ayelVk~iK~~~~~pv~lHtH 207 (472)
T COG5016 178 MAGLLTPYEAYELVKAIKKELPVPVELHTH 207 (472)
T ss_pred ccccCChHHHHHHHHHHHHhcCCeeEEecc
Confidence 3 3888888888888887777765433
No 205
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.46 E-value=30 Score=30.99 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhccceeecC
Q 020275 53 PHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++.+.+.-+.+.++|||+|.|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 4666665566778888888875
No 206
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=72.29 E-value=27 Score=32.82 Aligned_cols=67 Identities=7% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|+...++.|+|+|++..| ++++++.+++.+++.. ..+.+.++ .|-+++.+.++.. .+++.|-+-.
T Consensus 199 leqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~--~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ga 265 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLA--PHCTLSLA--------GGINLNTLKNYAD--CGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeEEEEE--------CCCCHHHHHHHHh--cCCCEEEECc
Confidence 34566667789999999876 6788888888776432 23445554 5677777766654 4677764443
No 207
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=72.27 E-value=92 Score=29.68 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecCCC------------------HHHHHHHHHHHHhcCCCccEEEE----------
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLAFETIPN------------------KLEAQALVELLEEENIQIPSWIC---------- 207 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~~ET~~~------------------~~E~~a~~~~~~~~~~~~pv~is---------- 207 (328)
+++.+||+++++ .|+-+|+.|...- +...+.+.+++++.+ ..+++.
T Consensus 33 ~~~~~~y~~rA~----gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G--~~~~~QL~H~G~~~~~ 106 (336)
T cd02932 33 DWHLVHYGSRAL----GGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQG--AKIGIQLAHAGRKAST 106 (336)
T ss_pred HHHHHHHHHHHc----CCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcC--CcEEEEccCCCcCCCC
Q ss_pred -------------------------EEecCCCCCCCCCCHHHHHHHHHh---------cCCceEEEECCCC---------
Q 020275 208 -------------------------FSSVDGENAPSGESFKECLDIINK---------SGKVNAVGINCAP--------- 244 (328)
Q Consensus 208 -------------------------~~~~~~~~l~~G~~~~~~~~~~~~---------~~~~~~iGvNC~~--------- 244 (328)
+........+.-.+.++.-..+++ ..+.++|=|||.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFls 186 (336)
T cd02932 107 APPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLS 186 (336)
T ss_pred CCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcC
Q ss_pred -----------------hhhhHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 245 -----------------PQFVENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 245 -----------------p~~~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
+..+...++.+++.. +.||++.-|... ......+.++..++++.+.+.|+.+
T Consensus 187 p~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~---------~~~~g~~~~e~~~ia~~Le~~gvd~ 257 (336)
T cd02932 187 PLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD---------WVEGGWDLEDSVELAKALKELGVDL 257 (336)
T ss_pred CccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc---------cCCCCCCHHHHHHHHHHHHHcCCCE
Q ss_pred E
Q 020275 306 I 306 (328)
Q Consensus 306 i 306 (328)
|
T Consensus 258 i 258 (336)
T cd02932 258 I 258 (336)
T ss_pred E
No 208
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=72.03 E-value=96 Score=29.82 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCHHHH---HHHHHHHHHHHHhcCCCeEEEec------------CCC-------------HHHHHHHHHHHHhc-CCCc
Q 020275 152 GVDLEKL---KDFHRRRLQVLVESGPDLLAFET------------IPN-------------KLEAQALVELLEEE-NIQI 202 (328)
Q Consensus 152 ~~~~~e~---~~~h~~qi~~l~~~gvD~i~~ET------------~~~-------------~~E~~a~~~~~~~~-~~~~ 202 (328)
.++.+|+ .+.|..-++...++|.|.|=+=. ..+ ..-+..+++++|+. +.+.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 4666555 45566666667789999985532 112 34555667777764 4345
Q ss_pred cEEEEEEecCCCCCCCCCCHHHHHHHHHh--cCCceEEEECCC-C--hh----------hhHHHHHHHHhhcCCeEEE
Q 020275 203 PSWICFSSVDGENAPSGESFKECLDIINK--SGKVNAVGINCA-P--PQ----------FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 203 pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGvNC~-~--p~----------~~~~~l~~l~~~~~~pl~~ 265 (328)
|+.+-++..+ ....|.++++++..++. ..+++.|-|... + +. ......+++++.++.|+++
T Consensus 206 ~v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 206 IIIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred eEEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 5555555433 23467788877665532 246777766432 1 10 1345567788888888776
No 209
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=72.02 E-value=48 Score=33.51 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.++++.|.++|+|+|.+.+ -.+...+...++.+++...+.|+++. ++.+.+++...++. ++++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~~a--Gad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALIEA--GADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHHHc--CCCEEEE
Confidence 6789999999999998885 34544555556666655336888872 46677777776653 5677654
No 210
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=72.01 E-value=40 Score=34.34 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcC-CCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEEN-IQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~-~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++|.+.++.+.+.|+|.|.+-.+ -.+.++...+.++++.- .++| |.+.+=++ .|..+...+..+.
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~H~Hnt----~GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INLHCHST----TGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEEEeCCC----CCcHHHHHHHHHH
Confidence 56788889999999999977632 35678888888888642 1344 45655332 3444454444443
No 211
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=71.75 E-value=1e+02 Score=30.04 Aligned_cols=110 Identities=20% Similarity=0.137 Sum_probs=63.7
Q ss_pred HHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCC
Q 020275 64 LEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADG 142 (328)
Q Consensus 64 l~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~ 142 (328)
+++|++.|.... .+|...+ ...+.+.+++-+....+++.|++. +.. |..+. +
T Consensus 85 ~~~g~~~i~i~~-~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~---------------G~~--v~~~~-e-------- 137 (378)
T PRK11858 85 IDCGVDAVHIFI-ATSDIHIKHKLKKTREEVLERMVEAVEYAKDH---------------GLY--VSFSA-E-------- 137 (378)
T ss_pred HhCCcCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---------------CCe--EEEEe-c--------
Confidence 468999877764 4444443 344777665555555555555431 223 33321 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 020275 143 SEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDG 213 (328)
Q Consensus 143 ~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~ 213 (328)
+.+.+ +. ++..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++. .++-++|.+-++
T Consensus 138 --d~~r~----~~----~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hnd 198 (378)
T PRK11858 138 --DASRT----DL----DFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA---VDIPIEVHCHND 198 (378)
T ss_pred --cCCCC----CH----HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCC
Confidence 12222 33 345666677778899987554 54 4567888888888764 244567776555
No 212
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=71.69 E-value=83 Score=28.96 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCC---CeEE---EecCCCHHHHHHHHHHHHhcC-CCccEEEEEE
Q 020275 154 DLEKLKDFHRRRLQVLVESGP---DLLA---FETIPNKLEAQALVELLEEEN-IQIPSWICFS 209 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gv---D~i~---~ET~~~~~E~~a~~~~~~~~~-~~~pv~is~~ 209 (328)
..++...+.+++++.+.+.|+ |+++ +....+......+++.+++.. .+.|+.+.++
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~S 204 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGAS 204 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 468889999999999999998 4432 223334544455554444321 2589999885
No 213
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=71.53 E-value=1.2e+02 Score=31.54 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.8
Q ss_pred HHHHHHHHHHH---hcCCCeEEEecCCCHHHHHHHHHHHHh
Q 020275 160 DFHRRRLQVLV---ESGPDLLAFETIPNKLEAQALVELLEE 197 (328)
Q Consensus 160 ~~h~~qi~~l~---~~gvD~i~~ET~~~~~E~~a~~~~~~~ 197 (328)
+.|+.|++++. +.|..-|+|=.+.+.+|++.+++++++
T Consensus 367 ~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 367 EILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 56777877764 468899999999999999999988875
No 214
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=71.18 E-value=25 Score=33.39 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=20.9
Q ss_pred CCCCCCccchhhhcC-CChHHHHHHHHHHHHhccceeecCCcCC
Q 020275 36 GASINDPLWSALYLI-KQPHLVKRVHLEYLEAGADILVTSSYQA 78 (328)
Q Consensus 36 G~~~~~~lws~~~ll-~~Pe~V~~iH~~yl~AGAdiI~TnTy~a 78 (328)
|+.+..|+..+.-.+ .+.+.+++ +.++|+--|.|-|...
T Consensus 8 Gl~l~NPv~~AsG~~~~~~e~~~~----~~~~g~Gavv~ktit~ 47 (310)
T PRK02506 8 GFKFDNCLMNAAGVYCMTKEELEE----VEASAAGAFVTKSATL 47 (310)
T ss_pred CEECCCCCEeCCCCCCCCHHHHHH----HHHcCCcEEEeCccCC
Confidence 445555555443334 45555554 4466666666666543
No 215
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=70.96 E-value=74 Score=30.34 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCCCCCccchhhhcC-CChHHHHHHHHHHHHhccceeecCCcCCCh----hhH----------HhCCCCHHHHHHHHHHH
Q 020275 36 GASINDPLWSALYLI-KQPHLVKRVHLEYLEAGADILVTSSYQATI----PGF----------LSRGLSIEEAESLLEKS 100 (328)
Q Consensus 36 G~~~~~~lws~~~ll-~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~----~~l----------~~~g~~~~~~~~l~~~a 100 (328)
|+.+..|+|-+.-.. .+.+.+..+.... +|+=++-|-|....+ .++ .+.|+. +-+
T Consensus 8 Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g--~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~--------N~G 77 (310)
T COG0167 8 GLKFPNPLGLAAGFDGKNGEELDALAALG--FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFN--------NPG 77 (310)
T ss_pred ceecCCCCeEcccCCccCHHHHHHHHhcC--CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCC--------chh
Confidence 677788999755555 7888888887777 888888888876311 111 222222 222
Q ss_pred HHHH-HHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 020275 101 VTLA-VEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAF 179 (328)
Q Consensus 101 v~lA-~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ 179 (328)
++.. .+..... .+ ..-..+-|..+++.. + ++-...|...++...+ +|.|-+
T Consensus 78 ~~~~~~~l~~~~-~~------~~~~~~~i~~~~~~~------------------~-~~~~~d~~~~~~~~~~--ad~iel 129 (310)
T COG0167 78 ADAFLEELKLAK-YE------GKPIGVNIGKNKGGP------------------S-EEAWADYARLLEEAGD--ADAIEL 129 (310)
T ss_pred HHHHHHHHHhhh-hc------cCCcCcceEEecCCC------------------c-HHHHHHHHHHHHhcCC--CCEEEE
Confidence 2211 1111110 00 000122344444321 1 2222334444444432 888855
Q ss_pred e-cCC----------CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceE-EEECCC
Q 020275 180 E-TIP----------NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNA-VGINCA 243 (328)
Q Consensus 180 E-T~~----------~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-iGvNC~ 243 (328)
. .-| +.+.+..+++++++.. .+|+++-++. +-+.+.+++..+.+ .++++ +-+|-+
T Consensus 130 NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P-------~~~di~~iA~~~~~-~g~Dgl~~~NT~ 196 (310)
T COG0167 130 NISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAP-------NITDIDEIAKAAEE-AGADGLIAINTT 196 (310)
T ss_pred EccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCC-------CHHHHHHHHHHHHH-cCCcEEEEEeec
Confidence 4 122 4456667788888764 6999999975 34456667766655 45564 566655
No 216
>PRK15452 putative protease; Provisional
Probab=70.95 E-value=79 Score=31.67 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHHhccceeec--CCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVT--SSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRAL 127 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~T--nTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 127 (328)
..+++.++. -+++|||-|.- ..|.+... ...++.++ ++.++++|++ .+.+++
T Consensus 10 ag~~e~l~a----Ai~~GADaVY~G~~~~~~R~~---~~~f~~ed----l~eav~~ah~---------------~g~kvy 63 (443)
T PRK15452 10 AGTLKNMRY----AFAYGADAVYAGQPRYSLRVR---NNEFNHEN----LALGINEAHA---------------LGKKFY 63 (443)
T ss_pred CCCHHHHHH----HHHCCCCEEEECCCccchhhh---ccCCCHHH----HHHHHHHHHH---------------cCCEEE
Confidence 466666664 46899997664 33443221 12344332 4556777764 245777
Q ss_pred EEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 128 VAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 128 VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
|+--.=| ..++ .+.+.+.++.+.+.|||.|++ .++.. +..+++...++|+++|
T Consensus 64 vt~n~i~-------------------~e~e-l~~~~~~l~~l~~~gvDgvIV---~d~G~----l~~~ke~~p~l~ih~s 116 (443)
T PRK15452 64 VVVNIAP-------------------HNAK-LKTFIRDLEPVIAMKPDALIM---SDPGL----IMMVREHFPEMPIHLS 116 (443)
T ss_pred EEecCcC-------------------CHHH-HHHHHHHHHHHHhCCCCEEEE---cCHHH----HHHHHHhCCCCeEEEE
Confidence 7654322 1123 334455677888899999984 45443 4455654336899999
Q ss_pred EEe
Q 020275 208 FSS 210 (328)
Q Consensus 208 ~~~ 210 (328)
+.+
T Consensus 117 tql 119 (443)
T PRK15452 117 VQA 119 (443)
T ss_pred ecc
Confidence 865
No 217
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.90 E-value=88 Score=28.88 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+.+.+++.-+.++++|++-|..+-...-. ..++.+|-+++.+.+++.+. ++-.+|+|.
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~-----~~lt~~Er~~l~~~~~~~~~-----------------~~~~vi~gv 76 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGES-----PTLSDEEHEAVIEAVVEAVN-----------------GRVPVIAGT 76 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcch-----hhCCHHHHHHHHHHHHHHhC-----------------CCCcEEecc
Confidence 35667777777788999988776222211 23455666666655554431 122344443
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec--C--CCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET--I--PNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET--~--~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
.++ +.++. .++++...+.|+|.+++-. + ++.+|+..-.+.+.+. .++|+++-
T Consensus 77 ~~~-------------------~~~~~----~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~~~pi~lY 132 (284)
T cd00950 77 GSN-------------------NTAEA----IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-TDLPVILY 132 (284)
T ss_pred CCc-------------------cHHHH----HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-CCCCEEEE
Confidence 322 22332 5678888889999887652 1 2345555545554444 37999955
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 208 FSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 208 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
-.. ..+-..-+.. .+..+.+. +..+|+-.++
T Consensus 133 n~P---~~~g~~ls~~-~~~~L~~~--p~v~giK~s~ 163 (284)
T cd00950 133 NVP---GRTGVNIEPE-TVLRLAEH--PNIVGIKEAT 163 (284)
T ss_pred ECh---hHhCCCCCHH-HHHHHhcC--CCEEEEEECC
Confidence 321 1111223443 34444333 4567777654
No 218
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=70.60 E-value=88 Score=28.76 Aligned_cols=40 Identities=25% Similarity=0.178 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHHHHcCCeEEeecCCC----ChHHHHHHHHHHhc
Q 020275 286 LGDGKFESFATRWRDSGAKLIGGCCRT----TPSTIQAVSKVLKE 326 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~G~~iiGGCCGt----~P~hI~al~~~l~~ 326 (328)
.+++.+.+.++++.+.|+..|. .|-| +|..+..+-+.++.
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~-l~DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN-IPDTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCHHHHHHHHHHHHH
Confidence 3688889999999999998876 5555 89999888777654
No 219
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=70.35 E-value=73 Score=27.75 Aligned_cols=94 Identities=13% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCeEEEecC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.+.++.+ +.|+|+| |-- -.......+++.+++...+.++.+-+.+.+-+. ..++.+.+ .+++.|-+
T Consensus 15 ~~~~~~l-~~~v~~i--ev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~~~-~Gad~i~v 82 (206)
T TIGR03128 15 LELAEKV-ADYVDII--EIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQAFA-AGADIVTV 82 (206)
T ss_pred HHHHHHc-ccCeeEE--EeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHHHH-cCCCEEEE
Confidence 4466777 7788864 532 222333445666665422456665554432221 12333333 46778878
Q ss_pred CCCCh-hhhHHHHHHHHhhcCCeEEEE-eCC
Q 020275 241 NCAPP-QFVENLICYFKELTKKAIVVY-PNS 269 (328)
Q Consensus 241 NC~~p-~~~~~~l~~l~~~~~~pl~~y-pN~ 269 (328)
.|..+ ..+..+++..++. +.++++- +|.
T Consensus 83 h~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~ 112 (206)
T TIGR03128 83 LGVADDATIKGAVKAAKKH-GKEVQVDLINV 112 (206)
T ss_pred eccCCHHHHHHHHHHHHHc-CCEEEEEecCC
Confidence 88643 3456666666553 4555543 554
No 220
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=70.34 E-value=1.1e+02 Score=29.70 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=63.1
Q ss_pred HHHHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcC
Q 020275 62 EYLEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLA 140 (328)
Q Consensus 62 ~yl~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~ 140 (328)
.-+++|+++|.... .+|...+ ...+.+.++.-+....+++.|++. +. .|.. ++
T Consensus 80 ~a~~~g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~---------------g~--~v~~--~~------ 133 (365)
T TIGR02660 80 AAARCGVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR---------------GL--FVSV--GG------ 133 (365)
T ss_pred HHHcCCcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC---------------CC--EEEE--ee------
Confidence 35678999877765 3444433 444777655555555555555431 22 2332 22
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 020275 141 DGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDG 213 (328)
Q Consensus 141 ~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~ 213 (328)
|..+. .+. +++.+.++.+.+.|+|.|.+- |. ..+.++...++.+++.- ++-++|.+=++
T Consensus 134 ---ed~~r----~~~----~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~---~v~l~~H~HNd 195 (365)
T TIGR02660 134 ---EDASR----ADP----DFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV---DLPLEMHAHND 195 (365)
T ss_pred ---cCCCC----CCH----HHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCC
Confidence 11111 233 344556666677899988654 43 45688888888887642 34467776554
No 221
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.33 E-value=91 Score=28.81 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=82.3
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHH-----------HHHHHHHHHhcCCCccEEE
Q 020275 138 YLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLE-----------AQALVELLEEENIQIPSWI 206 (328)
Q Consensus 138 ~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E-----------~~a~~~~~~~~~~~~pv~i 206 (328)
+|.||. |...+ ..+.++. .+.++.|.+.|||.|=+- +|+..+ .+.+.++.+....+.++.
T Consensus 5 TLRDG~-q~~~~--~f~~~~~----~~ia~~L~~~GVd~IEvG-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 75 (266)
T cd07944 5 TLRDGG-YVNNW--DFGDEFV----KAIYRALAAAGIDYVEIG-YRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIA- 75 (266)
T ss_pred CcccCc-cccCc--cCCHHHH----HHHHHHHHHCCCCEEEee-cCCCCccccCCCccCCCHHHHHHHHhhhccCCEEE-
Confidence 456664 44444 2466665 445666888999998333 333211 222222222211123332
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC--CChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCC
Q 020275 207 CFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC--APPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSK 284 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC--~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~ 284 (328)
.+. .... .... -+..... .++..|-+.+ ...+.+...++..++. ...+.+.+=. . ..
T Consensus 76 ~~~-~~~~-----~~~~-~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~~~~-----a------~~- 134 (266)
T cd07944 76 VMV-DYGN-----DDID-LLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEK-GYEVFFNLMA-----I------SG- 134 (266)
T ss_pred EEE-CCCC-----CCHH-HHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHC-CCeEEEEEEe-----e------cC-
Confidence 332 1111 1223 2333333 3566655554 3456666677766654 2333332210 0 11
Q ss_pred CCChhHHHHHHHHHHHcCCeEEee--cCC-CChHHHHHHHHHHhc
Q 020275 285 CLGDGKFESFATRWRDSGAKLIGG--CCR-TTPSTIQAVSKVLKE 326 (328)
Q Consensus 285 ~~~~~~~~~~~~~~~~~G~~iiGG--CCG-t~P~hI~al~~~l~~ 326 (328)
.+++.+.+.+++..+.|+..|.= ..| .+|+++..+-+.++.
T Consensus 135 -~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 135 -YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred -CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 36888999999999999866542 222 489999988887753
No 222
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=70.31 E-value=63 Score=31.86 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=38.2
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh----------------hhHHHHHHHHhhcCCeEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ----------------FVENLICYFKELTKKAIV 264 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~----------------~~~~~l~~l~~~~~~pl~ 264 (328)
+.|+++|+.-. .+-+.+.+++..+.+ .++++|=+|++.|. .+..+++.++...+.|+.
T Consensus 99 ~~p~i~si~g~-----~~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~ 172 (420)
T PRK08318 99 DRALIASIMVE-----CNEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVI 172 (420)
T ss_pred CceEEEEeccC-----CCHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEE
Confidence 47888888411 011234455565554 46888888876543 455666777776778988
Q ss_pred EEe
Q 020275 265 VYP 267 (328)
Q Consensus 265 ~yp 267 (328)
++-
T Consensus 173 vKl 175 (420)
T PRK08318 173 VKL 175 (420)
T ss_pred EEc
Confidence 754
No 223
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=70.18 E-value=30 Score=32.75 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|+...++.|+|+|.+.+|+ ++|++.+++.++ ..+.+..+ .|-++..+.++.. .+++.|.+-+
T Consensus 218 leea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~-----~~~~ieaS--------GGI~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 218 LDELDQALKAGADIIMLDNFT-TEQMREAVKRTN-----GRALLEVS--------GNVTLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred HHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhc-----CCeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 345666677999999999986 689999888654 13445553 4677777776654 5788888877
No 224
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=70.08 E-value=1.4e+02 Score=31.21 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 159 KDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 159 ~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.++|.+.++.+.+.|+|.|.+- |. -.+.++..++.++++.- ++| |.|.+-++ .|..+...+..+.+
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~GlA~An~laAieA 222 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVP--LHLHCHAT----TGLSTATLLKAIEA 222 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCe--EEEEECCC----CchHHHHHHHHHHc
Confidence 4678888999999999999775 32 45688888888888653 455 45554332 45555555555543
No 225
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=70.01 E-value=35 Score=31.18 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh--cCCceEEEEC---CC-------ChhhhHHH
Q 020275 184 NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK--SGKVNAVGIN---CA-------PPQFVENL 251 (328)
Q Consensus 184 ~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGvN---C~-------~p~~~~~~ 251 (328)
++.|+...++-+.+.- ++|+++=+ +.| .|.++..+.+.++. ..++.+|-|. |. +++.+..-
T Consensus 53 t~~e~~~~~~~I~~~~-~iPv~vD~---d~G---yG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 53 TLTEMLAAVRRIARAV-SIPVIVDA---DTG---YGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAK 125 (238)
T ss_dssp -HHHHHHHHHHHHHHS-SSEEEEE----TTT---SSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHH
T ss_pred CHHHHHHHHHHHHhhh-cCcEEEEc---ccc---cCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHH
Confidence 4455555555444433 68888655 223 45645555444432 1355555443 54 23344444
Q ss_pred HHHHHhhc---CCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 252 ICYFKELT---KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 252 l~~l~~~~---~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
|+...+.. +..|++.-++ +... ....++-.+.++.+.++||..|==.+-.+.++|+++.+.++
T Consensus 126 I~Aa~~a~~~~~~~I~ARTDa----------~~~~-~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 126 IRAAVDARRDPDFVIIARTDA----------FLRA-EEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD 191 (238)
T ss_dssp HHHHHHHHSSTTSEEEEEECH----------HCHH-HHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS
T ss_pred HHHHHHhccCCeEEEEEeccc----------cccC-CCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC
Confidence 44433332 2233333322 1100 01234566677888999998888888899999999998874
No 226
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=69.93 E-value=98 Score=29.02 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCc
Q 020275 56 VKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSY 135 (328)
Q Consensus 56 V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~ 135 (328)
+.+..+.++++|+|+|.-..-.++.. -++++..+++..-..+...+...+. +.++ +.=++|-
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~-----~isp~~f~e~~~p~~k~i~~~i~~~-----------g~~~-~lH~cG~- 231 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSS-----ILSPEDFKEFSLPYLKKVFDAIKAL-----------GGPV-IHHNCGD- 231 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccC-----CCCHHHHHHHhhHHHHHHHHHHHHc-----------CCce-EEEECCC-
Confidence 45566777788999988765433321 1355555555544444433333221 1122 2222222
Q ss_pred ccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHH
Q 020275 136 GAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQ 189 (328)
Q Consensus 136 g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~ 189 (328)
+ ...++.+.+.|+|++.++...++.|++
T Consensus 232 -------------~-------------~~~~~~l~~~~~d~~~~d~~~dl~~~~ 259 (330)
T cd03465 232 -------------T-------------APILELMADLGADVFSIDVTVDLAEAK 259 (330)
T ss_pred -------------c-------------hhHHHHHHHhCCCeEeecccCCHHHHH
Confidence 1 235677888899999999777776643
No 227
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.92 E-value=29 Score=32.62 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
|+...++.|+|+|.+..| +++|++.+++.++. .. ++..+ .|-+++.+.++.. .+++.|.+-.
T Consensus 206 ea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~---~~--~leaS--------GGI~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNM-TPDTLREAVAIVAG---RA--ITEAS--------GRITPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhCC---Cc--eEEEE--------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 455566799999999998 66888988886642 23 34443 5677777776654 5788888766
No 228
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=69.78 E-value=1e+02 Score=29.32 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred HHHHHHhc-CCCeEE-EecCC-------CHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 165 RLQVLVES-GPDLLA-FETIP-------NKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 165 qi~~l~~~-gvD~i~-~ET~~-------~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
.++...++ |+|+|. ++++. +.++.+ -+++.+++.+ +.|++ -+.| |.. ...+.
T Consensus 160 y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~pii-lH~c--------G~~-~~~l~ 228 (321)
T cd03309 160 LYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIV-HHSC--------GAA-ASLVP 228 (321)
T ss_pred HHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceE-EEeC--------CCc-HHHHH
Confidence 34444456 999987 46544 334433 4455565543 35655 4543 332 12344
Q ss_pred HHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHc----CC
Q 020275 228 IINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDS----GA 303 (328)
Q Consensus 228 ~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~ 303 (328)
.+.+ .+++++++-... ..+..+ ++..+..+.++.|-- +. .+... .++++..+.+++.++. |-
T Consensus 229 ~~~e-~g~dvl~~d~~~-~dl~ea----k~~~g~k~~l~GNlD----p~---~L~~~-~t~E~i~~~v~~~l~~~g~~~~ 294 (321)
T cd03309 229 SMAE-MGVDSWNVVMTA-NNTAEL----RRLLGDKVVLAGAID----DV---ALDTA-TWPEEDARGVAKAAAECAPIHP 294 (321)
T ss_pred HHHH-cCCCEEEecCCC-CCHHHH----HHHhCCCeEEEcCCC----hH---HhcCC-CCHHHHHHHHHHHHHHhCCCCC
Confidence 4443 355555543221 123333 333344567777732 11 12111 1367888888888765 33
Q ss_pred eEEeecCCCC----hHHHHHHHHHHh
Q 020275 304 KLIGGCCRTT----PSTIQAVSKVLK 325 (328)
Q Consensus 304 ~iiGGCCGt~----P~hI~al~~~l~ 325 (328)
-|+.-+|+-. |+-++++.+.+.
T Consensus 295 fIf~~~~~~~~~~~~~~~~~~~~~~~ 320 (321)
T cd03309 295 FISAPTAGLPFSIFPEVLRRVSAFLD 320 (321)
T ss_pred EEeCccCCCCcccCHHHHHHHHHhhc
Confidence 5777777744 789999887664
No 229
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=69.39 E-value=28 Score=33.22 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCeEEEecCC
Q 020275 165 RLQVLVESGPDLLAFETIP 183 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~ 183 (328)
.++.+.+.|.-++..-|+.
T Consensus 28 ~~~~~~~~G~Gavv~ktit 46 (325)
T cd04739 28 NIRRLEDAGAGAIVLPSLF 46 (325)
T ss_pred HHHHHHHCCCcEEEecccc
Confidence 4555777899999988885
No 230
>PRK12999 pyruvate carboxylase; Reviewed
Probab=69.17 E-value=48 Score=37.36 Aligned_cols=129 Identities=25% Similarity=0.306 Sum_probs=76.0
Q ss_pred hHHHHH-HHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 53 PHLVKR-VHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 53 Pe~V~~-iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
|+.|.+ .-+.-.+.|.|+|..+. .++ ++ +-.+.+++.++++ + ..+-++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd-----------~ln--d~-~~~~~~i~~vk~~---------------g--~~~~~~ 673 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFD-----------SLN--WV-ENMRVAIDAVRET---------------G--KIAEAA 673 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEec-----------cCC--hH-HHHHHHHHHHHHc---------------C--CeEEEE
Confidence 554444 35556778899988763 112 12 3355566666543 1 234567
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
++..|+.+.+ +++.| + .+||.+.++.+.+.|+|.|.+--+ -.+.++...+.++++.- ++| |.|
T Consensus 674 i~ytg~~~d~---~~~~~----~----~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ip--i~~ 739 (1146)
T PRK12999 674 ICYTGDILDP---ARAKY----D----LDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLP--IHL 739 (1146)
T ss_pred EEEEecCCCC---CCCCC----C----HHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCe--EEE
Confidence 7766655432 12223 2 257888899999999999977633 35678888888888653 455 455
Q ss_pred EecCCCCCCCCCCHHHHHHHHH
Q 020275 209 SSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 209 ~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
.+=++ .|..+..++..+.
T Consensus 740 H~Hnt----~Gla~an~laA~~ 757 (1146)
T PRK12999 740 HTHDT----SGNGLATYLAAAE 757 (1146)
T ss_pred EeCCC----CchHHHHHHHHHH
Confidence 54332 3555555554443
No 231
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.06 E-value=1.3e+02 Score=30.45 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecC
Q 020275 54 HLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIG 133 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiG 133 (328)
+.+.+.-+.++++|+|+|.-.+-+.+ + ....++-++.+.+| + +-.+|||.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~---------~--------~~~~~~i~~ik~~~----------p-~~~v~agnv~ 277 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH---------Q--------EKMLEALRAVRALD----------P-GVPIVAGNVV 277 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc---------c--------HHHHHHHHHHHHHC----------C-CCeEEeeccC
Confidence 44667778889999999886654433 1 11233344444443 1 2346777774
Q ss_pred CcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe---------------cCCCHHHHHHHHHHHHhc
Q 020275 134 SYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE---------------TIPNKLEAQALVELLEEE 198 (328)
Q Consensus 134 P~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E---------------T~~~~~E~~a~~~~~~~~ 198 (328)
- .+.++.|.++|+|+|-.- +.|.+.-+..+.+++++.
T Consensus 278 t----------------------------~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~ 329 (479)
T PRK07807 278 T----------------------------AEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAREL 329 (479)
T ss_pred C----------------------------HHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhc
Confidence 3 446777888999998622 234444444444544444
Q ss_pred CCCccEE
Q 020275 199 NIQIPSW 205 (328)
Q Consensus 199 ~~~~pv~ 205 (328)
+.|++
T Consensus 330 --~~~vi 334 (479)
T PRK07807 330 --GAHVW 334 (479)
T ss_pred --CCcEE
Confidence 48887
No 232
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=68.21 E-value=97 Score=28.32 Aligned_cols=97 Identities=10% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHHhcCCCeEEEec-CCCH--------------HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 166 LQVLVESGPDLLAFET-IPNK--------------LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 166 i~~l~~~gvD~i~~ET-~~~~--------------~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++...+.|+|.|-+-. .++. ..++.+++.+++.+ . .++|.+.+..+. +-+-+.+.+..+.
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~--~v~~~~~~~~~~-~~~~~~~~~~~~~ 149 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRG--L--FVSVGAEDASRA-DPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEeeccCCCC-CHHHHHHHHHHHH
Confidence 4556678999876643 2222 34456677777665 4 455666555542 1122333344443
Q ss_pred hcCCceEEEECCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 231 KSGKVNAVGINCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 231 ~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+ .++..|.+.=+ .|+.+..+++.+++..+.|+.+...
T Consensus 150 ~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 190 (259)
T cd07939 150 E-AGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAH 190 (259)
T ss_pred H-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3 45666655433 4999999999998877677776554
No 233
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=68.20 E-value=1.1e+02 Score=28.85 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETI 182 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~ 182 (328)
.+.++++..-+..+..+...|| ..+|..
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv--~y~E~r 92 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV--VYAEVF 92 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEE
Confidence 4678888888888888999999 466743
No 234
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.91 E-value=36 Score=32.07 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|+...++.|+|+|.+..| ++++++.+++.+++...+.|+.+| .|-+++.+.++.. .+++.|-+-.
T Consensus 206 leea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~ya~--tGvD~Isvgs 272 (288)
T PRK07428 206 LEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRAVAE--TGVDYISSSA 272 (288)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEEch
Confidence 34555566789999999976 558888888877754323443322 4666666666553 4677776655
No 235
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=67.77 E-value=1e+02 Score=28.49 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCeEEEecCC-CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh----cCCceEE
Q 020275 164 RRLQVLVESGPDLLAFETIP-NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK----SGKVNAV 238 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~----~~~~~~i 238 (328)
..++.|.+.|+|++.+|... ++.++ .++.+ ....+...+.+. +..|+. +++.+.+++ ...-..+
T Consensus 212 ~~~~~l~~~~~d~~~~d~~~~d~~~~------~~~~~--~~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~~~~~il 280 (306)
T cd00465 212 DLLEEMIQLGVDVISFDMTVNEPKEA------IEKVG--EKKTLVGGVDPG--YLPATD-EECIAKVEELVERLGPHYII 280 (306)
T ss_pred HHHHHHHHhCcceEecccccCCHHHH------HHHhC--CCEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHhCCCeEE
Confidence 35677778899999999765 55543 23333 223334444333 345654 544444432 1123567
Q ss_pred EECCC
Q 020275 239 GINCA 243 (328)
Q Consensus 239 GvNC~ 243 (328)
+-+|.
T Consensus 281 ~~~cg 285 (306)
T cd00465 281 NPDCG 285 (306)
T ss_pred eCCCC
Confidence 77785
No 236
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=67.73 E-value=1.1e+02 Score=28.75 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=64.3
Q ss_pred ceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe---c------CCCHHHHHH---HH
Q 020275 125 RALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE---T------IPNKLEAQA---LV 192 (328)
Q Consensus 125 ~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E---T------~~~~~E~~a---~~ 192 (328)
+..|-|-+-=+.+++.||..| .+.+.+ ..+++.+.+.|+|+|=+- | ++.-+|.+- ++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a----~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDA----VKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHH----HHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456888887777888776443 244554 557778888999998555 2 233346444 45
Q ss_pred HHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 193 ELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 193 ~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
+.+++. ..+.||+. -...+.+-..++. +++. ||=+ .| .+... +++ .+.++++.++
T Consensus 83 ~~l~~~---~~~~ISID---------T~~~~va~~AL~~--Gadi--INDI~g~~d~-~~~~~---~a~-~~~~vVlmh~ 141 (282)
T PRK11613 83 EAIAQR---FEVWISVD---------TSKPEVIRESAKA--GAHI--INDIRSLSEP-GALEA---AAE-TGLPVCLMHM 141 (282)
T ss_pred HHHHhc---CCCeEEEE---------CCCHHHHHHHHHc--CCCE--EEECCCCCCH-HHHHH---HHH-cCCCEEEEcC
Confidence 555532 23446773 2233333334443 4443 3322 23 33333 333 3678999998
Q ss_pred CCC
Q 020275 269 SGE 271 (328)
Q Consensus 269 ~g~ 271 (328)
.|.
T Consensus 142 ~g~ 144 (282)
T PRK11613 142 QGN 144 (282)
T ss_pred CCC
Confidence 774
No 237
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=67.47 E-value=1.1e+02 Score=28.73 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCeEEEecC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 162 HRRRLQVLVESGPDLLAFETI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
|..-++.|.+.|||+|- ||- +.+ +...+...|+.- +.|++. |=.+++++++.+.. +++.||-
T Consensus 76 ~~~Ea~~L~eaGvDiID-aT~r~rP--~~~~~~~iK~~~-~~l~MA-----------D~stleEal~a~~~--Gad~I~T 138 (283)
T cd04727 76 HFVEAQILEALGVDMID-ESEVLTP--ADEEHHIDKHKF-KVPFVC-----------GARNLGEALRRISE--GAAMIRT 138 (283)
T ss_pred HHHHHHHHHHcCCCEEe-ccCCCCc--HHHHHHHHHHHc-CCcEEc-----------cCCCHHHHHHHHHC--CCCEEEe
Confidence 45678899999999994 876 344 345566666543 577773 33567777776653 4555554
Q ss_pred C
Q 020275 241 N 241 (328)
Q Consensus 241 N 241 (328)
-
T Consensus 139 T 139 (283)
T cd04727 139 K 139 (283)
T ss_pred c
Confidence 4
No 238
>PRK08227 autoinducer 2 aldolase; Validated
Probab=67.36 E-value=1.1e+02 Score=28.52 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=67.4
Q ss_pred HHHHhcCCCeEEEecCC-CHHHHHHH------HHHHHhcCCCccEEEEEEecCCCCCCCCCC-HHHHHHHHHhcCCceEE
Q 020275 167 QVLVESGPDLLAFETIP-NKLEAQAL------VELLEEENIQIPSWICFSSVDGENAPSGES-FKECLDIINKSGKVNAV 238 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~~-~~~E~~a~------~~~~~~~~~~~pv~is~~~~~~~~l~~G~~-~~~~~~~~~~~~~~~~i 238 (328)
+..+..|+|.+.+=.++ +..|.+.+ ++.+.+. ++|+++ +... .....++.. +.-+++...+ .+++.|
T Consensus 101 eeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~--G~Plla-~~pr-G~~~~~~~~~ia~aaRiaaE-LGADiV 175 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY--GMPVMA-VTAV-GKDMVRDARYFSLATRIAAE-MGAQII 175 (264)
T ss_pred HHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh--CCcEEE-EecC-CCCcCchHHHHHHHHHHHHH-HcCCEE
Confidence 33456899998765544 44554444 3444444 599888 5432 222333222 3344444443 588999
Q ss_pred EECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC
Q 020275 239 GINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR 311 (328)
Q Consensus 239 GvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG 311 (328)
=++-+. ..++++-...+.|+++-. |. + .+.+++.+.+.+.++.|+ .|=|-|
T Consensus 176 K~~y~~-----~~f~~vv~a~~vPVviaG--G~------------k-~~~~~~L~~v~~ai~aGa--~Gv~~G 226 (264)
T PRK08227 176 KTYYVE-----EGFERITAGCPVPIVIAG--GK------------K-LPERDALEMCYQAIDEGA--SGVDMG 226 (264)
T ss_pred ecCCCH-----HHHHHHHHcCCCcEEEeC--CC------------C-CCHHHHHHHHHHHHHcCC--ceeeec
Confidence 988864 333343345677877622 10 1 245678899999999887 344444
No 239
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=67.14 E-value=1e+02 Score=28.21 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 020275 148 NYGPGVDLEKLKDFHRRRLQVLV-ESGPDLLAFETIPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 148 ~y~~~~~~~e~~~~h~~qi~~l~-~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
+|+. -+.+++.+...+.++.|. +.|||+|++=.- ..-+ .+++.+++.- +.|++
T Consensus 36 PYG~-ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCN--TA~a-~~~~~l~~~~-~iPii 89 (251)
T TIGR00067 36 PYGE-KSPEFILEYVLELLTFLKERHNIKLLVVACN--TASA-LALEDLQRNF-DFPVV 89 (251)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCc--hHHH-HHHHHHHHHC-CCCEE
Confidence 3443 388999999999999999 999999875421 1111 2355566543 58876
No 240
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=67.06 E-value=1.3e+02 Score=29.34 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCeEEEecCCCH---------------HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 165 RLQVLVESGPDLLAFETIPNK---------------LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~---------------~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
-++...+.|+|.+-+-.-.|- ..++.+++.+++.+ . -+.|++.+..+. +-.-+.+.++.+
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~--~v~~~~ed~~r~-~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--L--YVSFSAEDASRT-DLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEEeccCCCC-CHHHHHHHHHHH
Confidence 366667789998755433332 34445667777665 3 356666655543 223334445544
Q ss_pred HhcCCceEEEECC----CChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 230 NKSGKVNAVGINC----APPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 230 ~~~~~~~~iGvNC----~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.+ .++..|.+-= ..|..+..+++.+++..+.||.+...
T Consensus 155 ~~-~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 155 EE-AGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred Hh-CCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 43 3555544422 24999999999998877778877665
No 241
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=67.05 E-value=1.2e+02 Score=28.75 Aligned_cols=137 Identities=14% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCCeE-EEecCC-----CHHHHHHHH-----HHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLL-AFETIP-----NKLEAQALV-----ELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i-~~ET~~-----~~~E~~a~~-----~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.+-++.+.++|+|+| ++++.. +.++.+..+ +.++.... .|+++ +.| |.+ ...+..+.+
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~il-h~c--------G~~-~~~l~~~~~ 242 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-CPTIL-HIC--------GNT-TPILEYIAQ 242 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEE-EEC--------CCC-hhHHHHHHH
Confidence 344566677899987 666543 555555332 33333331 45554 333 222 233444444
Q ss_pred cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC
Q 020275 232 SGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR 311 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG 311 (328)
.+++++++--. ..+ +++++..+.-+.++.|-- +. . -+.. -++++..+.+++.++.|.-|++--||
T Consensus 243 -~g~d~~~~d~~--~dl----~e~~~~~g~~~~i~Gnid----p~-~-~l~~--gt~e~i~~~~~~~l~~g~~Il~~Gc~ 307 (326)
T cd03307 243 -CGFDGISVDEK--VDV----KTAKEIVGGRAALIGNVS----PS-Q-TLLN--GTPEDVKAEARKCLEDGVDILAPGCG 307 (326)
T ss_pred -cCCCeeccccc--CCH----HHHHHHcCCceEEEeCCC----hH-H-HhcC--CCHHHHHHHHHHHHHccCCEecCcCC
Confidence 24444332211 122 233333344466666642 11 0 0111 26888999999999988667766565
Q ss_pred ----CChHHHHHHHHHHh
Q 020275 312 ----TTPSTIQAVSKVLK 325 (328)
Q Consensus 312 ----t~P~hI~al~~~l~ 325 (328)
|.++.++++.++++
T Consensus 308 i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 308 IAPRTPLANLKAMVEARK 325 (326)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 57899999988875
No 242
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=66.93 E-value=86 Score=28.60 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCeEEEecC--CCHHHHHHHHHHHHhcCCCccEEEEEEec-CC--------CCCCCCCCHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLLAFETI--PNKLEAQALVELLEEENIQIPSWICFSSV-DG--------ENAPSGESFKECLDIINK 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~-~~--------~~l~~G~~~~~~~~~~~~ 231 (328)
.++++.+.+.|+|-+++-|. .+++- +-+++++++ +. +++|+..+ ++ +...++.++.+.+..+.+
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a~~~p~~---~~~~~~~~g-~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~ 160 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAALENPWW---AAAVIRYGG-DI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS 160 (243)
T ss_pred HHHHHHHHHcCCCEEEECchhhCCHHH---HHHHHHHcc-cc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh
Confidence 55778888899999988764 44433 334455554 33 88899886 32 112366778888888765
Q ss_pred cCCceEEEECCCChh-----hhHHHHHHHHhhcCCeEEE
Q 020275 232 SGKVNAVGINCAPPQ-----FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ 265 (328)
.++..|-++..+-+ .=..+++++...++.|+++
T Consensus 161 -~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pvia 198 (243)
T TIGR01919 161 -GGCSRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAA 198 (243)
T ss_pred -CCCCEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEE
Confidence 46666777665321 1234667777776778765
No 243
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=66.57 E-value=13 Score=34.05 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCC
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPN 184 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~ 184 (328)
+.+++.+.-.+-+..|.++|+|.+++|.+.+
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD 58 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGD 58 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCC
Confidence 7899999999899999999999999998765
No 244
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=66.57 E-value=71 Score=28.32 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEEN 199 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~ 199 (328)
+++.+.+.|+|++-+=..+...-++.+++.+++.+
T Consensus 68 ~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 68 QYESKIKQGADMVNVHGVAGSESVEAAKEAASEGG 102 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC
Confidence 44556679999999888888877888999887654
No 245
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=66.36 E-value=88 Score=29.00 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCe--EEEEeCCCCccCCccccc-----------cC
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKA--IVVYPNSGEVWDGRAKKW-----------LP 282 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~p--l~~ypN~g~~~d~~~~~~-----------~~ 282 (328)
+.||..+.++-....+ |++..+.+...++++++..+.| ++.|-|--..|. ...| +-
T Consensus 56 ~aDGpvIq~a~~rAL~---------~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G--~e~F~~~~~~aGvdgvi 124 (263)
T CHL00200 56 LADGPIIQEASNRALK---------QGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYG--INKFIKKISQAGVKGLI 124 (263)
T ss_pred CccCHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhC--HHHHHHHHHHcCCeEEE
Confidence 4588888777654322 3445777778888887655555 577777421110 0001 00
Q ss_pred CCCCChhHHHHHHHHHHHcCCeEEeecCCCC-hHHHHHHHHHHh
Q 020275 283 SKCLGDGKFESFATRWRDSGAKLIGGCCRTT-PSTIQAVSKVLK 325 (328)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~-P~hI~al~~~l~ 325 (328)
-.++..++..++...+.+.|...|=-+.=|| ++.|+.|++..+
T Consensus 125 ipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 125 IPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 0124567777888888899987777776666 578888877654
No 246
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=66.27 E-value=1.1e+02 Score=28.35 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+.+.+++.-+.+++.|.+-|..+--..-.. -++.+|-.++++.+++.+. ++-.+|+|
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-----~ls~~Er~~~~~~~~~~~~-----------------~~~~vi~g- 76 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESP-----TLTHEEHEELIRAVVEAVN-----------------GRVPVIAG- 76 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccc-----cCCHHHHHHHHHHHHHHhC-----------------CCCcEEee-
Confidence 356777777778889999887653322222 3455666666555554321 22234444
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec----CCCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET----IPNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET----~~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
+|.. +.++. .++++...+.|+|.+++-. -++.+|+..-.+.+.+.. ++|+++-
T Consensus 77 v~~~------------------~~~~~----i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~pv~lY 133 (292)
T PRK03170 77 TGSN------------------STAEA----IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DLPIILY 133 (292)
T ss_pred cCCc------------------hHHHH----HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEE
Confidence 3331 22222 5577778889999987632 124455555555554443 6999965
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCCh--hhhHHHH
Q 020275 208 FSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPP--QFVENLI 252 (328)
Q Consensus 208 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p--~~~~~~l 252 (328)
=.....+ ..-+. +.+..+.+. +..+|+-.+++ ..+..++
T Consensus 134 n~P~~~g---~~l~~-~~~~~L~~~--p~v~giK~s~~d~~~~~~~~ 174 (292)
T PRK03170 134 NVPGRTG---VDILP-ETVARLAEH--PNIVGIKEATGDLERVSELI 174 (292)
T ss_pred ECccccC---CCCCH-HHHHHHHcC--CCEEEEEECCCCHHHHHHHH
Confidence 3221112 12344 344445443 34677776543 3444443
No 247
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=66.16 E-value=19 Score=34.96 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=41.5
Q ss_pred CCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCC
Q 020275 123 YNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQ 201 (328)
Q Consensus 123 ~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~ 201 (328)
..+.+|+.++||... +.++++.|+++|+|+|.+-+ --+.......++.+|+.-.+
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 357899999999531 26789999999999999984 23334444455666654326
Q ss_pred ccEEEEE
Q 020275 202 IPSWICF 208 (328)
Q Consensus 202 ~pv~is~ 208 (328)
+|+++-=
T Consensus 150 ~~viaGN 156 (352)
T PF00478_consen 150 VPVIAGN 156 (352)
T ss_dssp SEEEEEE
T ss_pred ceEEecc
Confidence 8888543
No 248
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=66.10 E-value=1.1e+02 Score=28.08 Aligned_cols=134 Identities=14% Similarity=0.217 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeE-----EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC--HHHHH
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLL-----AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES--FKECL 226 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~--~~~~~ 226 (328)
+.+|+. .+++.+...++|++ +++.+++...+...+..+++.-.++|+++++-...+|-...+.. -.+.+
T Consensus 26 ~~~e~~----~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 26 TLEEVL----AEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred CHHHHH----HHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 556653 34444555678876 44556666666666666665423689999998766553333331 11222
Q ss_pred HHHHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEE-EeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCe
Q 020275 227 DIINKSGKVNAVGINCA-PPQFVENLICYFKELTKKAIVV-YPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAK 304 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~-ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 304 (328)
..+.....++.|=|.=. ..+.+..+++..++. ...+++ |=| | ...-+.+++.+...+..+.|+.
T Consensus 102 ~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~-~~kvI~S~H~-----------f--~~tP~~~~l~~~~~~~~~~gaD 167 (253)
T PRK02412 102 KAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEH-GVKVVLSYHD-----------F--EKTPPKEEIVERLRKMESLGAD 167 (253)
T ss_pred HHHHhcCCCCEEEEeccCChHHHHHHHHHHHHc-CCEEEEeeCC-----------C--CCCcCHHHHHHHHHHHHHhCCC
Confidence 32222222566666533 234455555554432 234443 211 1 1111234566666666677754
Q ss_pred E
Q 020275 305 L 305 (328)
Q Consensus 305 i 305 (328)
|
T Consensus 168 i 168 (253)
T PRK02412 168 I 168 (253)
T ss_pred E
Confidence 3
No 249
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=66.09 E-value=1.1e+02 Score=28.13 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
+++.+.++.+.+.|+|.|.+- |+ -.+.++...++.+++.-.+.++.+.|.+=++ .|..+..++..+..
T Consensus 143 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~----~GlA~An~laAi~a 213 (268)
T cd07940 143 DFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHND----LGLAVANSLAAVEA 213 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCC----cchHHHHHHHHHHh
Confidence 445677777888899988665 54 3568888888888864211126677776444 46667777776654
No 250
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.07 E-value=62 Score=29.04 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC------CCCCHHHHHHHHHhcCCce
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAP------SGESFKECLDIINKSGKVN 236 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~~~~~~~~~~~~~ 236 (328)
.++++.+.+.|+|.+.+-|.. +.+...+.++.+..+ ...+++|+.+.+..-.. .+.++.+.+..+.+ .++.
T Consensus 88 ~~~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~G~~ 164 (241)
T PRK13585 88 AEDAASLLDLGVDRVILGTAA-VENPEIVRELSEEFG-SERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE-LGAG 164 (241)
T ss_pred HHHHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhC-CCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH-cCCC
Confidence 345677777999998887643 222234444455444 35577888765332111 23366667766654 3444
Q ss_pred EE---EECCC--ChhhhHHHHHHHHhhcCCeEEE
Q 020275 237 AV---GINCA--PPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 237 ~i---GvNC~--~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
.+ .+... ....-...++++.+..+.|+++
T Consensus 165 ~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia 198 (241)
T PRK13585 165 SILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIA 198 (241)
T ss_pred EEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 33 33221 1111235577777766778655
No 251
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.93 E-value=1.6e+02 Score=29.96 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCeEEEecC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 163 RRRLQVLVESGPDLLAFETI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
.++++.|+++|+|+|.+-+- .+-..+...++.+++.-.++|+++ + +..+.+++...++. ++++|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~~a--Gad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLIDA--GADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHHHc--CCCEE
Confidence 67899999999999998652 122233445666665422567765 2 34566677766653 56665
No 252
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=65.84 E-value=75 Score=28.68 Aligned_cols=98 Identities=9% Similarity=-0.052 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC--CCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGEN--APSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~--l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.++++.+...|+|-+++-|..-- . ..+-+++++++ +-.+++|+.++++.. ..++.++.+.++.+... +..+-+
T Consensus 90 ~edv~~~l~~Ga~~viigt~~~~-~-~~~~~~~~~~~-~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~ 164 (233)
T cd04723 90 LENAQEWLKRGASRVIVGTETLP-S-DDDEDRLAALG-EQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW--PEELIV 164 (233)
T ss_pred HHHHHHHHHcCCCeEEEcceecc-c-hHHHHHHHhcC-CCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh--CCeEEE
Confidence 45778888899998887665432 2 45666777775 336899998865421 24677888888877653 333322
Q ss_pred CCC---C--hhhhHHHHHHHHhhcCCeEEE
Q 020275 241 NCA---P--PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 241 NC~---~--p~~~~~~l~~l~~~~~~pl~~ 265 (328)
+-. . -..-..+++.+.+....|+++
T Consensus 165 ~di~~~G~~~g~~~~~~~~i~~~~~ipvi~ 194 (233)
T cd04723 165 LDIDRVGSGQGPDLELLERLAARADIPVIA 194 (233)
T ss_pred EEcCccccCCCcCHHHHHHHHHhcCCCEEE
Confidence 222 1 111235566666666677655
No 253
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=65.80 E-value=27 Score=31.63 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=52.1
Q ss_pred CeEEEecchHHHHHHCCCCCCCcc----------chhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhH-HhCCC
Q 020275 20 GCAVIDGGFATQLETHGASINDPL----------WSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGF-LSRGL 88 (328)
Q Consensus 20 ~~lvlDGg~gt~L~~~G~~~~~~l----------ws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l-~~~g~ 88 (328)
.+.++||-|=.-||+.|+-...++ +...+.+.+++.- ++-.+||||||..|-=-..--.. .+.++
T Consensus 123 Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eA----qa~~~aGadiiv~hmg~ttgG~Igar~~~ 198 (276)
T COG5564 123 TVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEA----QAMTKAGADIIVAHMGLTTGGLIGARSAL 198 (276)
T ss_pred eeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHH----HHHHHcCcceeeecccccccceecccccc
Confidence 478999999999999876442111 1122223334332 33468999999877422221111 44567
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 020275 89 SIEEAESLLEKSVTLAVEARD 109 (328)
Q Consensus 89 ~~~~~~~l~~~av~lA~~a~~ 109 (328)
+.++..++.+...+-+|..++
T Consensus 199 Sl~~~vel~~~~~~aar~v~k 219 (276)
T COG5564 199 SLADCVELIELAAEAARGVRK 219 (276)
T ss_pred CHHHHHHHHHHHHHHHhhhhh
Confidence 777788888877777776643
No 254
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=65.51 E-value=1e+02 Score=27.66 Aligned_cols=105 Identities=19% Similarity=0.305 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCeEEEec-----CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC----------------CCCCC
Q 020275 162 HRRRLQVLVESGPDLLAFET-----IPNKLEAQALVELLEEENIQIPSWICFSSVDGEN----------------APSGE 220 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET-----~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~----------------l~~G~ 220 (328)
..++++.+.++|+|.|-+-- +|++.=--..++.+++..++.|+=+=+-+.+..+ ...-.
T Consensus 14 l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~ 93 (220)
T PRK08883 14 LGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcc
Confidence 36788888888888876542 2443323334555654311355433333322100 00112
Q ss_pred CHHHHHHHHHhcCCceEEEECCC-ChhhhHHHHHHHHhhcCC--eEEEEeCCC
Q 020275 221 SFKECLDIINKSGKVNAVGINCA-PPQFVENLICYFKELTKK--AIVVYPNSG 270 (328)
Q Consensus 221 ~~~~~~~~~~~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~--pl~~ypN~g 270 (328)
.+...+..+++..--.++-+|.. +.+.+.++++.+ +. -+.+.|-.|
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~----D~vlvMtV~PGfg 142 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKV----DLILLMSVNPGFG 142 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC----CeEEEEEecCCCC
Confidence 35566666765433346778875 445566665543 33 234656443
No 255
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=65.32 E-value=1.2e+02 Score=28.12 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHH---HHHHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKE---CLDIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~---~~~~~~~~~~~~~iGv 240 (328)
-++...+.|+|.|-+- ...++++++.+++.+|+.+ ..+.+++.. -. +.+.+. .++.+.+ .++..|.+
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~--a~----~~~~~~~~~~~~~~~~-~g~~~i~l 157 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLMA--IS----GYSDEELLELLELVNE-IKPDVFYI 157 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEEe--ec----CCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 3555567899986443 4567788888888888775 555555442 22 244444 4444443 36666655
Q ss_pred CCC----ChhhhHHHHHHHHhhcC--CeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELTK--KAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~~--~pl~~ypN 268 (328)
-=+ .|+.+..+++.+++..+ .|+.+...
T Consensus 158 ~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 158 VDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 433 49999999999988766 67776543
No 256
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=64.97 E-value=29 Score=27.08 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEEe--cCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 162 HRRRLQVLVESGPDLLAFE--TIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
|.+.+..+++.|. -+++| -..+++|++.+++++++.+ ++++|.|
T Consensus 75 h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~--~~~~Vg~ 120 (120)
T PF01408_consen 75 HAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKG--VKVMVGY 120 (120)
T ss_dssp HHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHT--SCEEEE-
T ss_pred hHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhC--CEEEEeC
Confidence 6777777777887 44457 3557888888888888775 6676643
No 257
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=64.97 E-value=1.2e+02 Score=28.90 Aligned_cols=66 Identities=14% Similarity=0.308 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.++++.++++|+|+|.+-+ ..+.......++.+++...++|+++ + +..+.+.+...++ .++++|-+
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~l~~--aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARDLID--AGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHHHHh--cCCCEEEE
Confidence 5688999999999998764 3344556666777776532466665 1 3356666666554 36676644
No 258
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=64.67 E-value=1e+02 Score=27.33 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|++...++|++|++ -|..++ .+++.+++.+ +|++=.. .++.|+....+. +...+=+-=
T Consensus 70 ~e~a~~a~~aGA~Fiv---SP~~~~--~v~~~~~~~~--i~~iPG~-----------~TptEi~~A~~~--G~~~vK~FP 129 (196)
T PF01081_consen 70 AEQAEAAIAAGAQFIV---SPGFDP--EVIEYAREYG--IPYIPGV-----------MTPTEIMQALEA--GADIVKLFP 129 (196)
T ss_dssp HHHHHHHHHHT-SEEE---ESS--H--HHHHHHHHHT--SEEEEEE-----------SSHHHHHHHHHT--T-SEEEETT
T ss_pred HHHHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CcccCCc-----------CCHHHHHHHHHC--CCCEEEEec
Confidence 5688888889999998 355543 4667777774 8887332 467888887753 455555433
Q ss_pred CChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEee
Q 020275 243 APPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGG 308 (328)
Q Consensus 243 ~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGG 308 (328)
...-.-.+.++.++.-.+ .+-+.|-+|. +++ .+.+|++.|+..+|+
T Consensus 130 A~~~GG~~~ik~l~~p~p-~~~~~ptGGV---------------~~~----N~~~~l~ag~~~vg~ 175 (196)
T PF01081_consen 130 AGALGGPSYIKALRGPFP-DLPFMPTGGV---------------NPD----NLAEYLKAGAVAVGG 175 (196)
T ss_dssp TTTTTHHHHHHHHHTTTT-T-EEEEBSS-----------------TT----THHHHHTSTTBSEEE
T ss_pred chhcCcHHHHHHHhccCC-CCeEEEcCCC---------------CHH----HHHHHHhCCCEEEEE
Confidence 221112466666654322 1333466552 232 345688899755554
No 259
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=64.62 E-value=1.3e+02 Score=28.65 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSR-GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
.+.+.+.-++-++.|-.-+.. |...+...++. |-+...-..++.++++..++.. .+.+|...
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~---------------p~l~vi~D 115 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAF---------------PELGIITD 115 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhC---------------CCcEEEEe
Confidence 356666668889999875544 33322222211 1110011246777777776542 23455543
Q ss_pred --cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC-CccEEEEE
Q 020275 132 --IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI-QIPSWICF 208 (328)
Q Consensus 132 --iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~-~~pv~is~ 208 (328)
+-||-..-+.|---.+ .++-++-.+...+|+-.++++|+|++.==-|-+ -.+.++.+++.+.+. +.|++ |-
T Consensus 116 Vclc~YT~hGHcGil~~~----~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMD-GrV~aIR~aLd~~g~~~v~Im-SY 189 (320)
T cd04823 116 VALDPYTSHGHDGIVRDG----GILNDETVEVLCKQALVQAEAGADIVAPSDMMD-GRIGAIREALDAEGFTNVSIL-SY 189 (320)
T ss_pred eeccCCCCCCcceeccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEcccchh-hHHHHHHHHHHHCCCCCCcee-ec
Confidence 4555443222211111 245566677778888889999999998554444 355677777877653 45554 43
Q ss_pred EecC-------------------CC--CCCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 209 SSVD-------------------GE--NAPSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 209 ~~~~-------------------~~--~l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
+.+= +. -.+|=..-.++++.+. -..+.+.+.|-=..| .+.+|+.+++.++.|+.+
T Consensus 190 saKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaa 267 (320)
T cd04823 190 AAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP--YLDIIRRVKDEFGVPTFA 267 (320)
T ss_pred hHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHhcCCCEEE
Confidence 2211 00 0122223345554432 124788888875543 457778888888899999
Q ss_pred EeCCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 266 YPNSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 266 ypN~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
|--+|+- .-.....|+.. ...+.|....+..+|+.+|
T Consensus 268 YqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~ikRAGAd~I 307 (320)
T cd04823 268 YQVSGEYAMLKAAAQNGWLDE----DKVMLESLLAFKRAGADGI 307 (320)
T ss_pred EEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 9999962 22223346431 2347777788899999876
No 260
>PRK00915 2-isopropylmalate synthase; Validated
Probab=64.57 E-value=1.7e+02 Score=29.85 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
.+++.|+..-+.-..+|.+.|.... .+|+..+ ...+.+.++..+....+++.|++. +.. |.
T Consensus 76 ~~~~did~a~~a~~~~~~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~---------------g~~--v~ 137 (513)
T PRK00915 76 AVKKDIDAAAEALKPAEAPRIHTFI-ATSPIHMEYKLKMSREEVLEMAVEAVKYARSY---------------TDD--VE 137 (513)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEEE-CCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---------------CCe--EE
Confidence 3456677776666678887666553 3344443 334777665555555566555532 222 32
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCC-ccEE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQ-IPSW 205 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~-~pv~ 205 (328)
++| |+.+. .+. +|..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++.-.+ ..+.
T Consensus 138 --f~~---------ed~~r----~d~----~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~ 198 (513)
T PRK00915 138 --FSA---------EDATR----TDL----DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAI 198 (513)
T ss_pred --EEe---------CCCCC----CCH----HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccce
Confidence 222 11111 233 455667777788899988554 43 4668888888888764111 1267
Q ss_pred EEEEecCC
Q 020275 206 ICFSSVDG 213 (328)
Q Consensus 206 is~~~~~~ 213 (328)
++|.+=++
T Consensus 199 l~~H~HND 206 (513)
T PRK00915 199 ISVHCHND 206 (513)
T ss_pred EEEEecCC
Confidence 88888665
No 261
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=64.44 E-value=1.2e+02 Score=28.23 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCccchhhhcCCChH---HHHHHHHHHHHhccce------eecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020275 40 NDPLWSALYLIKQPH---LVKRVHLEYLEAGADI------LVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDK 110 (328)
Q Consensus 40 ~~~lws~~~ll~~Pe---~V~~iH~~yl~AGAdi------I~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~ 110 (328)
+.|.|+-..--+.++ .+.+.|.+..++.-.. ...--+=+-...|.+.|.+++++.+..+.++++|++.+++
T Consensus 40 nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~e 119 (285)
T COG1831 40 NLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEE 119 (285)
T ss_pred ecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhc
Confidence 457898544334444 3455666665554221 1111122333556777877778999999999999998876
Q ss_pred hhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-hcCCCeE---EEecCCCHH
Q 020275 111 FWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLV-ESGPDLL---AFETIPNKL 186 (328)
Q Consensus 111 ~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~-~~gvD~i---~~ET~~~~~ 186 (328)
+ .+. .||=.| .+.|. .+.+....++.-...++. ...+|.- -.|.. +..
T Consensus 120 g-------------~av---aiGEvG---------rPHyp--Vs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~-~~~ 171 (285)
T COG1831 120 G-------------KAV---AIGEVG---------RPHYP--VSEEVWEASNEVLEYAMELAKDVDCAVQLHTESL-DEE 171 (285)
T ss_pred c-------------cee---eeeccC---------CCCCC--CCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-ChH
Confidence 3 222 344444 25663 566666665555544442 2335542 33432 335
Q ss_pred HHHHHHHHHHhcCCCccEEEEEE
Q 020275 187 EAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 187 E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
+.+.+-+.+++.|. .|+.+-..
T Consensus 172 ~~~~i~~~ak~~G~-~~~~VVkH 193 (285)
T COG1831 172 TYEEIAEMAKEAGI-KPYRVVKH 193 (285)
T ss_pred HHHHHHHHHHHhCC-CcceeEee
Confidence 67888888888873 46655443
No 262
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=64.38 E-value=1.2e+02 Score=27.91 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+.+.+++.-+..++.|++-|..+--..-. +.++.+|-.++.+.+++.+. ++-..|+|.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~-----~~ls~~Er~~l~~~~~~~~~-----------------~~~~vi~gv 73 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEA-----PTLTDEERKEVIEAVVEAVA-----------------GRVPVIAGV 73 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHHHHHHhC-----------------CCCeEEEec
Confidence 35677777777778899987755322221 13455566666555554431 122344543
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec----CCCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET----IPNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET----~~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
|.. +.++ -.++++...+.|+|.+++-. -++.+++..-.+.+.+. .++|+++-
T Consensus 74 -~~~------------------~~~~----~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iY 129 (281)
T cd00408 74 -GAN------------------STRE----AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDLPVILY 129 (281)
T ss_pred -CCc------------------cHHH----HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEE
Confidence 331 2222 25567777889999988753 12455655555555554 37999976
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC--hhhhHHHHH
Q 020275 208 FSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP--PQFVENLIC 253 (328)
Q Consensus 208 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~--p~~~~~~l~ 253 (328)
-.. ..+...-+.+. +..+.+. +..+|+-.++ ...+..+++
T Consensus 130 n~P---~~tg~~l~~~~-~~~L~~~--~~v~giK~s~~d~~~~~~~~~ 171 (281)
T cd00408 130 NIP---GRTGVDLSPET-IARLAEH--PNIVGIKDSSGDLDRLTRLIA 171 (281)
T ss_pred ECc---cccCCCCCHHH-HHHHhcC--CCEEEEEeCCCCHHHHHHHHH
Confidence 432 11112334443 3344433 3466776665 344444433
No 263
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.13 E-value=82 Score=26.04 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHhcCCceEEEECCCC---hhhhHHHHHHHHhh-cC-CeEEEEeCCCCccCCccccccCCCCCChhHHH
Q 020275 218 SGESFKECLDIINKSGKVNAVGINCAP---PQFVENLICYFKEL-TK-KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFE 292 (328)
Q Consensus 218 ~G~~~~~~~~~~~~~~~~~~iGvNC~~---p~~~~~~l~~l~~~-~~-~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~ 292 (328)
...++++.++.+.+ .+++.|++.|.. ...+..+++.+++. .+ .++++=.+. . ..++.|.
T Consensus 39 ~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~------------~---~~~~~~~ 102 (137)
T PRK02261 39 VMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL------------V---VGKHDFE 102 (137)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC------------C---CCccChH
Confidence 45788999988876 589999999963 45677778888765 22 233331110 0 1344577
Q ss_pred HHHHHHHHcCC-eEEeecCCCChHHHHHH
Q 020275 293 SFATRWRDSGA-KLIGGCCRTTPSTIQAV 320 (328)
Q Consensus 293 ~~~~~~~~~G~-~iiGGCCGt~P~hI~al 320 (328)
+..+++.+.|+ .+.++ ||.+++|-..
T Consensus 103 ~~~~~l~~~G~~~vf~~--~~~~~~i~~~ 129 (137)
T PRK02261 103 EVEKKFKEMGFDRVFPP--GTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHcCCCEEECc--CCCHHHHHHH
Confidence 77778888996 45653 4677776553
No 264
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.98 E-value=1.1e+02 Score=27.33 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|++...++|+||++ -|... ..+++.+++.+ .|++ +.-.++.|+....+. +.+.+=+-=
T Consensus 70 ~~~a~~a~~aGA~Fiv---sP~~~--~~v~~~~~~~~--i~~i-----------PG~~TptEi~~A~~~--Ga~~vKlFP 129 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIV---SPGLT--PELAKHAQDHG--IPII-----------PGVATPSEIMLALEL--GITALKLFP 129 (204)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC--HHHHHHHHHcC--CcEE-----------CCCCCHHHHHHHHHC--CCCEEEECC
Confidence 5678888899999997 34442 35667777764 7877 223578889887764 344433322
Q ss_pred CChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCCh
Q 020275 243 APPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTP 314 (328)
Q Consensus 243 ~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P 314 (328)
.+.-.-...++.++.-++ .+-++|-+| .++ +.+.+|++.|+..+|+--.-.|
T Consensus 130 A~~~GG~~yikal~~plp-~i~~~ptGG---------------V~~----~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 130 AEVSGGVKMLKALAGPFP-QVRFCPTGG---------------INL----ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred chhcCCHHHHHHHhccCC-CCcEEecCC---------------CCH----HHHHHHHhCCCEEEEEChhhcC
Confidence 110000244555443211 122235444 344 4556699999977776544443
No 265
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=63.64 E-value=1e+02 Score=30.27 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=33.5
Q ss_pred CccEEEEEEecCCCCCCCCCCHH---HHHHHHHhcCCceEEEECCCC----------------hhhhHHHHHHHHhhcCC
Q 020275 201 QIPSWICFSSVDGENAPSGESFK---ECLDIINKSGKVNAVGINCAP----------------PQFVENLICYFKELTKK 261 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~~iGvNC~~----------------p~~~~~~l~~l~~~~~~ 261 (328)
+.|+++|+. .+.+.+ +.+..+.+ .++++|=+|-+. |+.+..+++.++...+.
T Consensus 113 ~~pvIaSi~--------~~~s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~i 183 (385)
T PLN02495 113 DRILIASIM--------EEYNKDAWEEIIERVEE-TGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATV 183 (385)
T ss_pred CCcEEEEcc--------CCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcC
Confidence 468888873 113333 34444443 456676665532 34456666777776778
Q ss_pred eEEEEe
Q 020275 262 AIVVYP 267 (328)
Q Consensus 262 pl~~yp 267 (328)
|++++-
T Consensus 184 Pv~vKL 189 (385)
T PLN02495 184 PVWAKM 189 (385)
T ss_pred ceEEEe
Confidence 887654
No 266
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=63.64 E-value=54 Score=30.50 Aligned_cols=72 Identities=25% Similarity=0.239 Sum_probs=44.2
Q ss_pred ceEEEeecCCcccCcCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 020275 125 RALVAASIGSYGAYLADGSEYSGNYGPG-VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 125 ~~~VaGsiGP~g~~l~~~~eY~g~y~~~-~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.+-|.|=||=++-.... .|.|... -+.+++ +.-.++++++.++|+|.|++|-+| .+.++.+.+.+ +.|
T Consensus 129 gIpV~gHiGltPq~a~~----~ggy~~qgrt~~~a-~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l-----~iP 197 (263)
T TIGR00222 129 GVPVVGHLGLTPQSVNI----LGGYKVQGKDEEAA-KKLLEDALALEEAGAQLLVLECVP-VELAAKITEAL-----AIP 197 (263)
T ss_pred CCCEEEecCCCceeEee----cCCeeecCCCHHHH-HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhC-----CCC
Confidence 45677777655433221 1223211 244444 345668899999999999999999 46666666543 478
Q ss_pred EEEEE
Q 020275 204 SWICF 208 (328)
Q Consensus 204 v~is~ 208 (328)
++ .+
T Consensus 198 ~i-GI 201 (263)
T TIGR00222 198 VI-GI 201 (263)
T ss_pred EE-ee
Confidence 54 54
No 267
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=63.55 E-value=1.2e+02 Score=27.63 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 020275 87 GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRL 166 (328)
Q Consensus 87 g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi 166 (328)
|++.+....+.++-.+..++-++.. ..+.+|.-|+-- ... -.+...-..++....--.-+
T Consensus 9 GMgpeST~~yyr~ine~~~~~~g~~-----------h~~~i~~~s~~f-~~~--------~~~q~~~~w~~~~~~L~~~a 68 (230)
T COG1794 9 GMGPESTAPYYRKINEAVRAKLGGL-----------HSAELLLYSVDF-PEI--------ETLQRAGEWDEAGEILIDAA 68 (230)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCc-----------CcchhheecCCc-ccH--------HHHHccCccccHHHHHHHHH
Confidence 6777777788888888877665432 112233333211 100 00111124456666667778
Q ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh
Q 020275 167 QVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ 246 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~ 246 (328)
+.|.++|+|+|++-|-. +-...+.+++.- ++|++ ++ +++.+..+.+. ++--+|+=-+-+.
T Consensus 69 ~~Le~~GAd~i~l~~NT----~H~~~d~iq~~~-~iPll-hI-------------idaTa~~ik~~-g~kkvgLLgT~~T 128 (230)
T COG1794 69 KKLERAGADFIVLPTNT----MHKVADDIQKAV-GIPLL-HI-------------IDATAKAIKAA-GAKKVGLLGTRFT 128 (230)
T ss_pred HHHHhcCCCEEEEeCCc----HHHHHHHHHHhc-CCCee-hH-------------HHHHHHHHHhc-CCceeEEeeccch
Confidence 88999999999987632 344455555432 58876 33 23445555442 3333444333222
Q ss_pred hhHHHHH-HHHhhcCCeEEEEeCCCCc-------cCCcc-ccccCCCCCChhHHHHHHHHHHHcCC-eEEeecCCC
Q 020275 247 FVENLIC-YFKELTKKAIVVYPNSGEV-------WDGRA-KKWLPSKCLGDGKFESFATRWRDSGA-KLIGGCCRT 312 (328)
Q Consensus 247 ~~~~~l~-~l~~~~~~pl~~ypN~g~~-------~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~-~iiGGCCGt 312 (328)
-...+-+ .+.+. ... ++-|+.-.. |+.-+ +.. ...+.+.|.+.++++.+.|+ .||=||-..
T Consensus 129 m~~~fY~~~l~~~-gie-vvvPdd~~q~~v~~iIy~El~~G~~---~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi 199 (230)
T COG1794 129 MEQGFYRKRLEEK-GIE-VVVPDDDEQAEVNRIIYEELCQGIV---KDASRELYLAVIERLAERGAEGVILGCTEI 199 (230)
T ss_pred HHhHHHHHHHHHC-Cce-EecCCHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHcCCCEEEEeccch
Confidence 2222222 22222 222 344765311 22100 000 01246678999999999998 667789653
No 268
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=63.39 E-value=1.3e+02 Score=28.09 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHH-hCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFL-SRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
-+.+-|+.. +++|++.|.-. +.+|..... ..+.+.+++.+.....++.|++. ...|.
T Consensus 75 ~~~~die~A----~~~g~~~v~i~-~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~-----------------g~~v~ 132 (279)
T cd07947 75 ANKEDLKLV----KEMGLKETGIL-MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH-----------------GIKPR 132 (279)
T ss_pred CCHHHHHHH----HHcCcCEEEEE-EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC-----------------CCeEE
Confidence 344444443 46799866553 455655543 44777666666666666655531 13344
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHhcCCC-eE-EEecCCC---------HHHHHHHHHHHHh
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDL-EKLKDFHRRRLQVLVESGPD-LL-AFETIPN---------KLEAQALVELLEE 197 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~-~e~~~~h~~qi~~l~~~gvD-~i-~~ET~~~---------~~E~~a~~~~~~~ 197 (328)
.++ -+. . + .++ +.+.++-.+.++...+.|+| .| +..|+.. +.++..+++.+++
T Consensus 133 ~~~--ed~-----------~-r-~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~ 197 (279)
T cd07947 133 CHL--EDI-----------T-R-ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRK 197 (279)
T ss_pred EEE--Ecc-----------c-C-CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHH
Confidence 444 111 0 0 122 23334455556666679999 45 6778773 2677888888876
Q ss_pred cCCCcc-EEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 198 ENIQIP-SWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 198 ~~~~~p-v~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.- +.| +-+++.+=++ .|..+..++..+..
T Consensus 198 ~~-~~p~~~l~~H~Hn~----~Gla~AN~laA~~a 227 (279)
T cd07947 198 DC-GVPSENLEWHGHND----FYKAVANAVAAWLY 227 (279)
T ss_pred hc-CCCCceEEEEecCC----CChHHHHHHHHHHh
Confidence 42 344 5567776443 47777777777654
No 269
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=63.38 E-value=1.5e+02 Score=28.75 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEE-----ecCCCHHHHHHHHHHHHhcCC---CccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 155 LEKLKDFHRRRLQVLVESGPDLLAF-----ETIPNKLEAQALVELLEEENI---QIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 155 ~~e~~~~h~~qi~~l~~~gvD~i~~-----ET~~~~~E~~a~~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
.+++...|++.++.|.++||+.|=+ -+..+..+...+.++.+.... +.++.++..+. . +.+++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg--------~-~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFG--------S-LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEeccc--------c-hHHHH
Confidence 4778889999999999999998732 234444466666666665421 35577764432 1 24556
Q ss_pred HHHHhcCCceEEEECCCChhhhHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHH--cC
Q 020275 227 DIINKSGKVNAVGINCAPPQFVENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD--SG 302 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~G 302 (328)
..+.+ .+++++++-++... .-++.+.... ++.|++ | +.|+ ...|+. +.++..+.+.+..+ ..
T Consensus 248 ~~l~~-l~Vd~l~le~~~~~---~~l~~l~~~~~~~k~l~l----G-vId~-rn~~~e----d~e~i~~~i~~a~~~v~~ 313 (360)
T cd03312 248 DLLAS-LPVDGLHLDLVRGP---ENLEAVLKAGFADKVLSA----G-VVDG-RNIWRA----DLAASLALLETLAAILGD 313 (360)
T ss_pred HHHHc-CCCCEEEEEecCCc---ccHHHHHhcCCCCCEEEE----E-EEcC-CCCCcC----CHHHHHHHHHHHHHHhcC
Confidence 66655 57899999998642 2233333211 233322 1 1222 234654 46666666655544 22
Q ss_pred CeEEeecCCC
Q 020275 303 AKLIGGCCRT 312 (328)
Q Consensus 303 ~~iiGGCCGt 312 (328)
=-+|.=-||-
T Consensus 314 ~l~lsp~CgL 323 (360)
T cd03312 314 RLVVSPSCSL 323 (360)
T ss_pred cEEEECCCCC
Confidence 2457777775
No 270
>PLN02417 dihydrodipicolinate synthase
Probab=63.17 E-value=1.3e+02 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHH
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTL 103 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~l 103 (328)
+.+.+++.-+-+++.|++-|..+--..-... ++.+|-+++++.+++.
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~-----ls~~Er~~~~~~~~~~ 66 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQL-----MSWDEHIMLIGHTVNC 66 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhh-----CCHHHHHHHHHHHHHH
Confidence 3567788777788999998776644433333 3555666666555543
No 271
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=63.06 E-value=1e+02 Score=28.24 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCC----C-------CCCCCCHHHHHHHHHh
Q 020275 165 RLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSWICFSSVDGE----N-------APSGESFKECLDIINK 231 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~----~-------l~~G~~~~~~~~~~~~ 231 (328)
.++.+.+.|+|.+.+-| +.++.-++ +++++.+ +-.+.+|+.++.+. + -....++.+.+..+.+
T Consensus 88 d~~~l~~~G~~~vvigs~~~~~~~~~~---~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~ 163 (258)
T PRK01033 88 QAKKIFSLGVEKVSINTAALEDPDLIT---EAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA 163 (258)
T ss_pred HHHHHHHCCCCEEEEChHHhcCHHHHH---HHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH
Confidence 45555677999988765 34444444 3444443 22367888876541 0 1134456677777755
Q ss_pred cCCceEEEECCCChh-----hhHHHHHHHHhhcCCeEEE
Q 020275 232 SGKVNAVGINCAPPQ-----FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ 265 (328)
.++..+-+.....+ .=..+++++.+..+.|+++
T Consensus 164 -~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIa 201 (258)
T PRK01033 164 -LGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIA 201 (258)
T ss_pred -cCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEE
Confidence 46666666654321 1245667777777778755
No 272
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=63.05 E-value=20 Score=32.39 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCC-CC------CCCCCCHHHHHHHHHhcC
Q 020275 163 RRRLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSWICFSSVDG-EN------APSGESFKECLDIINKSG 233 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~-~~------l~~G~~~~~~~~~~~~~~ 233 (328)
.+.++.+.+.|+|-+++-| +.+++- +-+++++.+ +-.+++|+.++++ .- -..+.++.+.+..+.+ .
T Consensus 85 ~ed~~~ll~~Ga~~Vvigt~~~~~~~~---l~~~~~~~g-~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~-~ 159 (229)
T PF00977_consen 85 IEDAERLLDAGADRVVIGTEALEDPEL---LEELAERYG-SQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE-L 159 (229)
T ss_dssp HHHHHHHHHTT-SEEEESHHHHHCCHH---HHHHHHHHG-GGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH-T
T ss_pred HHHHHHHHHhCCCEEEeChHHhhchhH---HHHHHHHcC-cccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh-c
Confidence 4577888889999888765 444433 344455555 4578999998775 11 1234568888888876 4
Q ss_pred CceEEEECCCChh-----hhHHHHHHHHhhcCCeEEE
Q 020275 234 KVNAVGINCAPPQ-----FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 234 ~~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ 265 (328)
++..|-+++..-+ .=..+++.+.+..+.|+++
T Consensus 160 g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~via 196 (229)
T PF00977_consen 160 GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIA 196 (229)
T ss_dssp T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEE
T ss_pred CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEE
Confidence 6777888775321 1236678887777888766
No 273
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=62.78 E-value=1.2e+02 Score=27.85 Aligned_cols=103 Identities=9% Similarity=0.103 Sum_probs=71.7
Q ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCC--------------CCCCCCCCHHHHHHHHHh
Q 020275 166 LQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDG--------------ENAPSGESFKECLDIINK 231 (328)
Q Consensus 166 i~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~--------------~~l~~G~~~~~~~~~~~~ 231 (328)
++.++.+|+|-+-+.| +-+....-+-+++++++ +.-+++++.++.+ |+-..|-+..+-+..+.+
T Consensus 89 ~~~ll~aGADKVSINs-aAv~~p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~ 166 (256)
T COG0107 89 ARKLLRAGADKVSINS-AAVKDPELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEE 166 (256)
T ss_pred HHHHHHcCCCeeeeCh-hHhcChHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHH
Confidence 4466779999999887 34455566778888887 6778888876442 233344455555555554
Q ss_pred cCCceEEEECCCCh-----hhhHHHHHHHHhhcCCeEEEEeCCCC
Q 020275 232 SGKVNAVGINCAPP-----QFVENLICYFKELTKKAIVVYPNSGE 271 (328)
Q Consensus 232 ~~~~~~iGvNC~~p-----~~~~~~l~~l~~~~~~pl~~ypN~g~ 271 (328)
.++-=|.+||..- -+=.++++.+++..+.|+++-.-+|.
T Consensus 167 -~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~ 210 (256)
T COG0107 167 -LGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGK 210 (256)
T ss_pred -cCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCc
Confidence 4667799999742 23457888899989999999777774
No 274
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=62.75 E-value=1.6e+02 Score=28.96 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCeEEEec-C--------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFET-I--------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
.+.++.+.+.|+|+|=+-. - .+.+.+..+++.+++.. ++|+++-++. +-+.+.+.++
T Consensus 116 ~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-------~~~~~~~~a~ 187 (420)
T PRK08318 116 KEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-------NITDIREPAR 187 (420)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC-------CcccHHHHHH
Confidence 3444455567899886541 1 34567777888888754 6999998863 2234667777
Q ss_pred HHHhcCCceEEE-ECC
Q 020275 228 IINKSGKVNAVG-INC 242 (328)
Q Consensus 228 ~~~~~~~~~~iG-vNC 242 (328)
.+.+ .++++|- +|-
T Consensus 188 ~~~~-~Gadgi~~~Nt 202 (420)
T PRK08318 188 AAKR-GGADAVSLINT 202 (420)
T ss_pred HHHH-CCCCEEEEecc
Confidence 6654 3566544 444
No 275
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=62.64 E-value=1.8e+02 Score=29.42 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-c--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-T--IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++|.+.++.+.+.|+|.|.+- | +-.+.++...+.++++.- ++| |.|.+=++ .|..+..++..+.
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vp--I~~H~Hnt----~GlA~AN~laAie 219 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVP--VEVHSHCT----TGLASLAYLAAVE 219 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 667888888999999998765 3 245678888888888652 355 45554332 3454554444443
No 276
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.56 E-value=80 Score=31.99 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHhcCCCeEEEecCCCHHHH-------HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH-------HHHHh-cC
Q 020275 169 LVESGPDLLAFETIPNKLEA-------QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL-------DIINK-SG 233 (328)
Q Consensus 169 l~~~gvD~i~~ET~~~~~E~-------~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~-------~~~~~-~~ 233 (328)
+...+.|++++|-.-.+-+- ....+.++.. +.||++-..+. +.++..++ ..+.+ ..
T Consensus 313 ~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l--~~PVILV~~~~-------~g~i~~~~~~i~G~~~~l~~~~i 383 (476)
T PRK06278 313 VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL--GFPVYIVSSCS-------KSGIEGAFVESMAYYSLLKKMGV 383 (476)
T ss_pred HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHh--CCCEEEEEcCC-------CChHHHHHHHHHHHHHHHhcCCC
Confidence 33347899999987665553 1335677766 49999877652 22222222 22222 23
Q ss_pred CceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 234 KVNAVGINCAPPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 234 ~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.+.+|-+|++.+......++.+-+.++.|+.-+|-
T Consensus 384 ~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 384 KVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 56789999997544445555554446778655565
No 277
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=62.50 E-value=1e+02 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCeEEEe-----cCCCHHHHHHHHHHHHhcCCCccEEEEEEec
Q 020275 161 FHRRRLQVLVESGPDLLAFE-----TIPNKLEAQALVELLEEENIQIPSWICFSSV 211 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~E-----T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~ 211 (328)
...++++.+.++|+|.|-+- .+++...-..+++.+++.. +.|+.+-+.+.
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~~ 66 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMVE 66 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeeeC
Confidence 35778999999999999874 4455444444555565442 56765544443
No 278
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=62.40 E-value=58 Score=30.51 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|++..++.|+|+|.+..| ++++++.+++.+++.. ..+.+.++ .|-+++.+..+.. .+++.|-+-.
T Consensus 198 leea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~--~~~~leas--------GGI~~~ni~~ya~--~GvD~is~ga 264 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFD--HIPTLAAA--------GGINPENIADYIE--AGIDLFITSA 264 (277)
T ss_pred HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 34566667789999999875 6788888888776432 34555664 5677777776654 3566664443
No 279
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.32 E-value=1.3e+02 Score=28.76 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCeEEEe--------c-------CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFE--------T-------IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E--------T-------~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
.++++.+.++|+|+|.+. | .|.+.-+..+.+++++. +.|++. +|-+.++ .+++.
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~--~vpVIA------~GGI~~~---~di~k 214 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY--GVPVIA------DGGIRTS---GDIVK 214 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc--CCcEEe------cCCCCCH---HHHHH
Confidence 456777888999999862 1 23333334444444433 488773 2323333 45555
Q ss_pred HHHhcCCceEEEE
Q 020275 228 IINKSGKVNAVGI 240 (328)
Q Consensus 228 ~~~~~~~~~~iGv 240 (328)
.+. .+.+++.+
T Consensus 215 Ala--~GA~~Vmi 225 (325)
T cd00381 215 ALA--AGADAVML 225 (325)
T ss_pred HHH--cCCCEEEe
Confidence 554 35666665
No 280
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=62.32 E-value=59 Score=31.01 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh-cCCceEEEECCC----Ch---hhhH---HHHHHHHhh
Q 020275 190 ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK-SGKVNAVGINCA----PP---QFVE---NLICYFKEL 258 (328)
Q Consensus 190 a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~~~iGvNC~----~p---~~~~---~~l~~l~~~ 258 (328)
.-.+.+|+...+.|+++++.+.... |.+.+++.+.++. ......+++||. .| .... ..|+.+.+.
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~----~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~ 176 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLN----GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA 176 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccC----CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 4455566655458999988754221 4455554444432 134566788872 12 1233 566777777
Q ss_pred cCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE--EeecCCCC
Q 020275 259 TKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL--IGGCCRTT 313 (328)
Q Consensus 259 ~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i--iGGCCGt~ 313 (328)
.+.|++++-++. ..+ .+.++.+.+.|+.. ++|.+||+
T Consensus 177 ~~vPVivK~~g~--------------g~s----~~~a~~l~~~Gvd~I~vsG~GGt~ 215 (326)
T cd02811 177 LSVPVIVKEVGF--------------GIS----RETAKRLADAGVKAIDVAGAGGTS 215 (326)
T ss_pred cCCCEEEEecCC--------------CCC----HHHHHHHHHcCCCEEEECCCCCCc
Confidence 788999875431 012 35566778889744 56766653
No 281
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.91 E-value=1.3e+02 Score=27.39 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCeEEEecCC--CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIP--NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~--~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.+.++.+.+.|+|.+++=..| ..+|....++.+++.+ +.+.+.+. ..++++..-..++...++..+++
T Consensus 91 ~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~--------p~T~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTS--------PKFPDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCEEEEEe
Confidence 345777888999999874322 1478888889999886 66666664 45666655555555556666688
Q ss_pred CCC--C--hhhhHHHHHHHHhhcC-CeE
Q 020275 241 NCA--P--PQFVENLICYFKELTK-KAI 263 (328)
Q Consensus 241 NC~--~--p~~~~~~l~~l~~~~~-~pl 263 (328)
|=. + +..+...++++++..+ .|+
T Consensus 161 ~~~~g~~~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 161 RPATGVPLPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCCCE
Confidence 764 2 4556667777777653 454
No 282
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=61.79 E-value=1.2e+02 Score=27.07 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCC------------CCCCCCHHHHHHHHH
Q 020275 165 RLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSWICFSSVDGEN------------APSGESFKECLDIIN 230 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~------------l~~G~~~~~~~~~~~ 230 (328)
.++.+.+.|+|.+.+-| +.+++-++ ++.++.+ ...+++|+.+..+.. ...+.+..+.+..+.
T Consensus 88 d~~~~~~~G~~~vilg~~~l~~~~~~~---~~~~~~~-~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 88 DAKKLLSLGADKVSINTAALENPDLIE---EAARRFG-SQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred HHHHHHHcCCCEEEEChhHhcCHHHHH---HHHHHcC-CceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 44445567999887764 44444333 3444444 222667887765410 112445566666665
Q ss_pred hcCCceEEEECCCChh-----hhHHHHHHHHhhcCCeEEE
Q 020275 231 KSGKVNAVGINCAPPQ-----FVENLICYFKELTKKAIVV 265 (328)
Q Consensus 231 ~~~~~~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ 265 (328)
+ .+++.|-+.....+ .-.++++++.+..+.|+++
T Consensus 164 ~-~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia 202 (232)
T TIGR03572 164 Q-LGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA 202 (232)
T ss_pred H-cCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE
Confidence 5 46777766664322 2256777777777778655
No 283
>TIGR00035 asp_race aspartate racemase.
Probab=61.64 E-value=1.1e+02 Score=27.42 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCC
Q 020275 155 LEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGK 234 (328)
Q Consensus 155 ~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 234 (328)
.++...+..+.++.|.+.|+|++++=..+ +-..++.+++.- ++|++ ++ ++.++..+.+ .+
T Consensus 57 ~~~~~~~l~~~~~~L~~~g~d~iviaCNT----ah~~~~~l~~~~-~iPii-~i-------------~~~~~~~~~~-~~ 116 (229)
T TIGR00035 57 EDRPRPILIDIAVKLENAGADFIIMPCNT----AHKFAEDIQKAI-GIPLI-SM-------------IEETAEAVKE-DG 116 (229)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCcc----HHHHHHHHHHhC-CCCEe-ch-------------HHHHHHHHHH-cC
Confidence 35677888888999999999999876543 233355666543 58876 32 2334444433 24
Q ss_pred ceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCC-------ccCCccccccCCC-CCChhHHHHHHHHHHHcCC-eE
Q 020275 235 VNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGE-------VWDGRAKKWLPSK-CLGDGKFESFATRWRDSGA-KL 305 (328)
Q Consensus 235 ~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~-------~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-~i 305 (328)
.--||+=.+....-....++.-.....- ++.|.... .|+. +..+. ....+.+.+.+.++.+.|+ .|
T Consensus 117 ~~~VgvLaT~~T~~s~~y~~~l~~~g~~-v~~p~~~~~~~i~~~i~~~----~~~g~~~~~~~~l~~~~~~l~~~gad~i 191 (229)
T TIGR00035 117 VKKAGLLGTKGTMKDGVYEREMKKHGIE-IVTPDKEEQEAIMSGIYDE----VKAGNIELGRELLLKIAKELEERGAEGI 191 (229)
T ss_pred CCEEEEEecHHHHHhHHHHHHHHHCCCE-EECCCHHHHHHHHHHHHHH----HhcCCcHHHHHHHHHHHHHHHhCCCCEE
Confidence 4467777665333333333222212222 23455321 0111 00010 1133457778888888887 55
Q ss_pred EeecCC
Q 020275 306 IGGCCR 311 (328)
Q Consensus 306 iGGCCG 311 (328)
|=||-.
T Consensus 192 ILgCTe 197 (229)
T TIGR00035 192 ILGCTE 197 (229)
T ss_pred EEeCcc
Confidence 777854
No 284
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=61.33 E-value=1.4e+02 Score=32.49 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=64.0
Q ss_pred HHHHhcCCCeE-EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC---HH---HHHHHHHhcCCceEEE
Q 020275 167 QVLVESGPDLL-AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES---FK---ECLDIINKSGKVNAVG 239 (328)
Q Consensus 167 ~~l~~~gvD~i-~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~---~~---~~~~~~~~~~~~~~iG 239 (328)
+.-.++|+|+| +|..+..++.++.+++++++.+ +-+=.++ |....-|..+.+ +. ..+..+.+ .+.--+|
T Consensus 637 kqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~g--kv~Eati-CYTGDildp~r~kY~L~YY~~lA~el~~-~GaHIla 712 (1149)
T COG1038 637 KQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAG--KVAEATI-CYTGDILDPGRKKYTLDYYVKLAKELEK-AGAHILA 712 (1149)
T ss_pred HHHHhcCccEEEeehhhcchhhhhhHHHHHHhcC--CeEEEEE-EeccccCCCCcccccHHHHHHHHHHHHh-cCCcEEE
Confidence 33457999998 7889999999999999999986 3222233 222333334433 22 33333433 4666777
Q ss_pred ECCC----ChhhhHHHHHHHHhhcCCeEEEE
Q 020275 240 INCA----PPQFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 240 vNC~----~p~~~~~~l~~l~~~~~~pl~~y 266 (328)
|-=. .|.....++..|+...+.|+=+.
T Consensus 713 IKDMAGLLKP~AA~~Li~aLr~~~dlPIHlH 743 (1149)
T COG1038 713 IKDMAGLLKPAAAYRLISALRETVDLPIHLH 743 (1149)
T ss_pred ehhhhhccCHHHHHHHHHHHHHhcCCceEEe
Confidence 7764 38888899999999888887553
No 285
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=61.31 E-value=1.3e+02 Score=27.44 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCC---------CCCCCCCHHHHHHHHHh--
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGE---------NAPSGESFKECLDIINK-- 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~---------~l~~G~~~~~~~~~~~~-- 231 (328)
.+-++.|.++|++.+-+|-.. |....++++++.+ .|++.-....... ..++-..++++++....
T Consensus 92 ~~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~ 166 (240)
T cd06556 92 FELAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYA 166 (240)
T ss_pred HHHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHH
Confidence 445677778999999999763 5555677777664 5665444321110 11111335556544322
Q ss_pred cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEe
Q 020275 232 SGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 232 ~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~yp 267 (328)
..++++|=+-|..+ ..++++.+..+.|++..-
T Consensus 167 ~AGAd~i~~e~~~~----e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 167 PAGADLIVMECVPV----ELAKQITEALAIPLAGIG 198 (240)
T ss_pred HcCCCEEEEcCCCH----HHHHHHHHhCCCCEEEEe
Confidence 25788999998843 344445555678876643
No 286
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.25 E-value=1.6e+02 Score=28.48 Aligned_cols=102 Identities=7% Similarity=0.032 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCeEEEe-----------cCCCHHHHH----HHHHHHHhcCCCccEEEE--EEecCCCCCCCCCCHHHHH
Q 020275 164 RRLQVLVESGPDLLAFE-----------TIPNKLEAQ----ALVELLEEENIQIPSWIC--FSSVDGENAPSGESFKECL 226 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~E-----------T~~~~~E~~----a~~~~~~~~~~~~pv~is--~~~~~~~~l~~G~~~~~~~ 226 (328)
+-++..++.|+|.+.+- .--+.+|+. .+++.+++.+..+-+.+| |.|.+.++. +-+-+.+.+
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~ 203 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVA 203 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHH
Confidence 34555667899987655 223455554 356777766533333343 445555542 222334444
Q ss_pred HHHHhcCCceEEEECCC----ChhhhHHHHHHHHhhcCC-eEEEEe
Q 020275 227 DIINKSGKVNAVGINCA----PPQFVENLICYFKELTKK-AIVVYP 267 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~~-pl~~yp 267 (328)
+.+.+ .+++-|.+-=+ .|..+..+++.+++..+. ||.+..
T Consensus 204 ~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~ 248 (347)
T PLN02746 204 KELYD-MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHF 248 (347)
T ss_pred HHHHH-cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 44443 45665554332 499999999999877653 565544
No 287
>PRK09358 adenosine deaminase; Provisional
Probab=61.12 E-value=1.5e+02 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK 185 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~ 185 (328)
.+.++++..-+..++.+++.|| ..+|+..++
T Consensus 74 ~t~ed~~~~~~~~~~e~~~~Gv--ty~E~~~~p 104 (340)
T PRK09358 74 QTEEDLRRLAFEYLEDAAADGV--VYAEIRFDP 104 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEEeCh
Confidence 4778888888888888888998 466665443
No 288
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=60.96 E-value=1.1e+02 Score=28.53 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=95.4
Q ss_pred EEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE-----EEecCCC--HHHHHHHHHHHHhcC
Q 020275 127 LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLL-----AFETIPN--KLEAQALVELLEEEN 199 (328)
Q Consensus 127 ~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i-----~~ET~~~--~~E~~a~~~~~~~~~ 199 (328)
+++ .|=|....++ .|+..-+.+.+.+|-+..++.+.+ -|.++ +||.... +.-++.+++.+++.+
T Consensus 16 lcv-GlDP~~~~l~-------~~~~~~~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g 86 (278)
T PRK00125 16 LCV-GLDPHPSLLP-------AWGLSGDADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG 86 (278)
T ss_pred EEE-EECCChHhcc-------cccccccHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHHCC
Confidence 444 4667555443 222234678888888988888853 34333 4454421 122344677777664
Q ss_pred CCccEEEEEEecCCCCCCCCCCHHHHHHHHHh-cCCceEEEECCC-ChhhhHHHHHHHHhhcCC-e-EEEEeCCC--Ccc
Q 020275 200 IQIPSWICFSSVDGENAPSGESFKECLDIINK-SGKVNAVGINCA-PPQFVENLICYFKELTKK-A-IVVYPNSG--EVW 273 (328)
Q Consensus 200 ~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~-p-l~~ypN~g--~~~ 273 (328)
+||++-+..-|= |.+....++.+.. ..+++++-+|+. ..+-+.++++...+.-.. . ++.-.|.+ .+.
T Consensus 87 --~~VilD~K~~DI-----~nTv~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~lq 159 (278)
T PRK00125 87 --VLVIADAKRGDI-----GSTAEAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVLCRTSNPGGSDLQ 159 (278)
T ss_pred --CcEEEEeecCCh-----HHHHHHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHH
Confidence 888876654221 3445556665542 257899999985 577788887766443222 2 22234443 111
Q ss_pred CCccccccCCCCCC-hhHHHHHHHHHHH-----cCCeEEe-ecCCCChHHHHHHHHHHh
Q 020275 274 DGRAKKWLPSKCLG-DGKFESFATRWRD-----SGAKLIG-GCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 274 d~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~G~~iiG-GCCGt~P~hI~al~~~l~ 325 (328)
+-. ... .-+ .+...+.+.++.+ .|. +| ==|.|-|+.++.||+.+.
T Consensus 160 ~~~----~~~-~~~l~~~V~~~a~~~~~~~~~~~g~--~G~VVgaT~p~e~~~iR~~~~ 211 (278)
T PRK00125 160 FLR----TAD-GRPLYQHVADLAAALNNLGNCGYGS--IGLVVGATFPPELAAVRKILG 211 (278)
T ss_pred hhh----ccC-CCcHHHHHHHHHHHHhccccCCCCC--CEEEECCCCHHHHHHHHHhCC
Confidence 100 000 001 1234555555554 343 44 334466999999998753
No 289
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.58 E-value=59 Score=30.66 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+|+...++.|+|+|++..| ++++++.+++.+++ .+.+..+ .|-+++.+.++.. .+++.|-+-+
T Consensus 208 eea~~a~~agaDiImLDnm-spe~l~~av~~~~~-----~~~leaS--------GGI~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG-----RSRIECS--------GNIDMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC-----ceEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4566667789999999987 67888888886642 2344443 5677777776654 4788877766
No 290
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.33 E-value=96 Score=25.54 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHhcCCceEEEECCC---ChhhhHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhHHHH
Q 020275 219 GESFKECLDIINKSGKVNAVGINCA---PPQFVENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFES 293 (328)
Q Consensus 219 G~~~~~~~~~~~~~~~~~~iGvNC~---~p~~~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~ 293 (328)
-.+.++.++.+.+ ..++.||+++- +...+..+++.++..- +.++++=.+. . ..+++|.+
T Consensus 36 ~v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~------------~---i~~~d~~~ 99 (128)
T cd02072 36 LSPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL------------V---VGKQDFED 99 (128)
T ss_pred CCCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC------------C---CChhhhHH
Confidence 4677888887765 47899999983 4677888888887652 2344441110 0 23556877
Q ss_pred HHHHHHHcCC-eEEeecCCCChHHHHH
Q 020275 294 FATRWRDSGA-KLIGGCCRTTPSTIQA 319 (328)
Q Consensus 294 ~~~~~~~~G~-~iiGGCCGt~P~hI~a 319 (328)
...++.++|+ .++| =||.|++|-.
T Consensus 100 ~~~~L~~~Gv~~vf~--pgt~~~~i~~ 124 (128)
T cd02072 100 VEKRFKEMGFDRVFA--PGTPPEEAIA 124 (128)
T ss_pred HHHHHHHcCCCEEEC--cCCCHHHHHH
Confidence 7788899997 3444 3567776643
No 291
>PRK11430 putative CoA-transferase; Provisional
Probab=60.25 E-value=21 Score=34.88 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=32.0
Q ss_pred HhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCccc
Q 020275 65 EAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGA 137 (328)
Q Consensus 65 ~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~ 137 (328)
-+.|||+.+| |+ +..+++.|++.+.++++ ++-+|..||..||.
T Consensus 91 ~~~ADVvien-~r--pg~~~rlGl~y~~L~~~---------------------------nP~LI~~sisgfG~ 133 (381)
T PRK11430 91 LKQADVLAEN-FR--PGTMEKLGFSWETLQEI---------------------------NPRLIYASSSGFGH 133 (381)
T ss_pred HhcCCEEEeC-CC--ccHHHHcCCCHHHHHHH---------------------------CCCceEEeeeeCCC
Confidence 4569999998 55 67788889987655431 45688889988875
No 292
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=59.78 E-value=1.3e+02 Score=29.01 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhccceeecCCcCCChhhHHhC-----C---------CCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 020275 55 LVKRVHLEYLEAGADILVTSSYQATIPGFLSR-----G---------LSIEEAESLLEKSVTLAVEARDKFWDAVKKVPG 120 (328)
Q Consensus 55 ~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-----g---------~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~ 120 (328)
.++++...=++||.|+++-.-|+ ..+... | +. ++...+.+ .+...+++.+|.++.
T Consensus 39 ~~~~~~~~q~dAGld~~Tdgqlr---Dm~~~fl~~i~~~~~~~~p~~~~-~~~a~i~e--l~~~~~~~~~~~~~~----- 107 (344)
T PRK06052 39 VVRSAFQMKIDAGVQVPTYPQFR---DMIEQFLDIIRDEKCCEEPYVVK-EECAKILE--LEAIEEVAKEYKEET----- 107 (344)
T ss_pred HHHHHHHHHHhcCCccccchHHH---HHHHhHHHHHcCCcccCCCeeee-hhhhhHHH--HHHHHHHHHHHHHhh-----
Confidence 66777788888999999888887 222111 1 11 11112221 234456667776664
Q ss_pred CCCCceEEEee-cCCcccCcCCCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHhcCCCeEEE-----ecCC----CHHH
Q 020275 121 HNYNRALVAAS-IGSYGAYLADGSEYSG-NYGP--GVDLEKLKDFHRRRLQVLVESGPDLLAF-----ETIP----NKLE 187 (328)
Q Consensus 121 ~~~~~~~VaGs-iGP~g~~l~~~~eY~g-~y~~--~~~~~e~~~~h~~qi~~l~~~gvD~i~~-----ET~~----~~~E 187 (328)
|.+..|=++ -||+--+.. .|.+ .|.+ ..-..++..+-++.++.|.+.||++|-+ -|.+ +.++
T Consensus 108 --~~~~~VKv~iTGP~tL~~~---~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~ 182 (344)
T PRK06052 108 --GETLEVRVCVTGPTELYLQ---EFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDE 182 (344)
T ss_pred --CCCCCeEEEecCHHHHHHH---HcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHH
Confidence 222223333 277532221 1222 3432 1123566677788899999999998843 3433 5566
Q ss_pred HHHHHHHHHhc--CCCccEEEEEEecCCCCCCCCCCHHHHH-HHHHhcCCceEEEECCCC-hhhhHHHHHHH--HhhcCC
Q 020275 188 AQALVELLEEE--NIQIPSWICFSSVDGENAPSGESFKECL-DIINKSGKVNAVGINCAP-PQFVENLICYF--KELTKK 261 (328)
Q Consensus 188 ~~a~~~~~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~iGvNC~~-p~~~~~~l~~l--~~~~~~ 261 (328)
+..+++.+-.. ..++-+=+.+.+ ... ..+.+.++++.+++-++. |+.+ .+++.. .. .++
T Consensus 183 ~i~Al~~a~~~a~~~gvdv~i~lH~-------------~l~~~~i~~~~~idvi~~E~A~~~~~L-~~l~~~~~e~-~dk 247 (344)
T PRK06052 183 IISALTVASTYARKQGADVEIHLHS-------------PLYYELICETPGINVIGVESAATPSYL-DLIDKKVLED-TDT 247 (344)
T ss_pred HHHHHHHHHhhhccCCcceEEEEeh-------------HhhHHHHhcCCCCCEEeeeccCChHHH-HHHhhhhhhh-cCC
Confidence 66666655110 112333333322 233 344444449999999984 7544 333331 11 133
Q ss_pred e--EEEEeC--C---C---CccCCccccccC--------CCCCChhHHHHHHHHHHHc-C--CeEEeecCCCC
Q 020275 262 A--IVVYPN--S---G---EVWDGRAKKWLP--------SKCLGDGKFESFATRWRDS-G--AKLIGGCCRTT 313 (328)
Q Consensus 262 p--l~~ypN--~---g---~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-G--~~iiGGCCGt~ 313 (328)
. +++.=- . + +.| .++.|-. ...-+++++.+.+++.++. + --+|.=-||--
T Consensus 248 ~ig~GV~dtd~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK 318 (344)
T PRK06052 248 FLRVGVARTDIFSLIAILNEKY--GTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLG 318 (344)
T ss_pred ceEEeEEEchhhcchhhhhhhc--ccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCC
Confidence 3 233222 1 0 111 1233522 1223677888877766543 3 36677888875
No 293
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.30 E-value=1.7e+02 Score=28.52 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhc--CCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC
Q 020275 248 VENLICYFKELT--KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR 311 (328)
Q Consensus 248 ~~~~l~~l~~~~--~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG 311 (328)
+..+++.+++.. +.|+++.-|.... .++......+++++.++++.+.+.|+.+|=..||
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~-----~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQ-----QDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccc-----cccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 445556666654 3578887774211 1121111246777888888777888887766665
No 294
>PLN02591 tryptophan synthase
Probab=58.84 E-value=1.5e+02 Score=27.28 Aligned_cols=156 Identities=11% Similarity=0.169 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCeEEEe-cCC---------------------CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCC
Q 020275 162 HRRRLQVLVESGPDLLAFE-TIP---------------------NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~E-T~~---------------------~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G 219 (328)
..+.++.|.++|||+|=+- =|+ +++..-..++.+|+. .+.|++ -++..+.- ...
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~i-lm~Y~N~i-~~~- 93 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIV-LFTYYNPI-LKR- 93 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE-EEecccHH-HHh-
Confidence 4667889999999998322 111 222333334444433 357865 34332221 112
Q ss_pred CCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEE-EEeCCCCc----cCCcccccc---C-----C-CC
Q 020275 220 ESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIV-VYPNSGEV----WDGRAKKWL---P-----S-KC 285 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~-~ypN~g~~----~d~~~~~~~---~-----~-~~ 285 (328)
.++..++.+.+ .+++++.+.=-.++....+.+..+++--.++. +-|+.... .......|+ . + +.
T Consensus 94 -G~~~F~~~~~~-aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~ 171 (250)
T PLN02591 94 -GIDKFMATIKE-AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARA 171 (250)
T ss_pred -HHHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCc
Confidence 34566676665 57888888866677777777777665323443 33776421 000011111 1 0 00
Q ss_pred CChhHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHH
Q 020275 286 LGDGKFESFATRWRDS-GAKLIGGCCRTTPSTIQAVSKV 323 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~ 323 (328)
-.+.+..+++++..+. ...++=|=-=++|+|++++.+.
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW 210 (250)
T ss_pred CCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc
Confidence 1244556656655553 4545444555679999998765
No 295
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=58.78 E-value=82 Score=29.26 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCHH---HHHHHHHHHHhcCCCccEEEEEEec--CCC-C-------CCCCCCHHHHHHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIPNKL---EAQALVELLEEENIQIPSWICFSSV--DGE-N-------APSGESFKECLDIIN 230 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~---E~~a~~~~~~~~~~~~pv~is~~~~--~~~-~-------l~~G~~~~~~~~~~~ 230 (328)
++++.+++.|||-+++-|.--.+ +-.-+-+++++++ +-.+++++.++ +.. + -.++.++.+.+..+.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~ 173 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFL 173 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence 57888899999999998864321 1334455666665 46789999986 331 1 224557777655554
Q ss_pred hcCCceEEEECCCChhh-----hHHHHHHHHhhcCCeEEE
Q 020275 231 KSGKVNAVGINCAPPQF-----VENLICYFKELTKKAIVV 265 (328)
Q Consensus 231 ~~~~~~~iGvNC~~p~~-----~~~~l~~l~~~~~~pl~~ 265 (328)
+. ++..|-++..+-+- =..+++++.+.+..|+++
T Consensus 174 ~~-g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIA 212 (262)
T PLN02446 174 AA-YCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTY 212 (262)
T ss_pred Hh-CCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEE
Confidence 43 46667776654222 135667777777788876
No 296
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=58.64 E-value=1.6e+02 Score=27.71 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCeEEEecC--------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFETI--------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
.+.++.+.+.||-.|.+|-. -+.+|...=++++++...+.+++|---. |..+.. .++++++.
T Consensus 96 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~--g~deAI~R 171 (292)
T PRK11320 96 ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALAVE--GLDAAIER 171 (292)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccccc--CHHHHHHH
Confidence 35678899999999999974 2566777777777765335667765543 333333 47888876
Q ss_pred HHh--cCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEe
Q 020275 229 INK--SGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYP 267 (328)
Q Consensus 229 ~~~--~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~yp 267 (328)
... ..++++|-+-+. .++.+..+.+. .+.|+.+-+
T Consensus 172 a~aY~eAGAD~ifi~~~~~~~~i~~~~~~----~~~Pl~~n~ 209 (292)
T PRK11320 172 AQAYVEAGADMIFPEAMTELEMYRRFADA----VKVPILANI 209 (292)
T ss_pred HHHHHHcCCCEEEecCCCCHHHHHHHHHh----cCCCEEEEe
Confidence 532 247888888775 35555555444 457875533
No 297
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=58.43 E-value=1.2e+02 Score=29.41 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=62.2
Q ss_pred HHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccC
Q 020275 59 VHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAY 138 (328)
Q Consensus 59 iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~ 138 (328)
....-++||+|+|.--+-+.+... + ++..++.+++| + +-..|+|.+..
T Consensus 112 r~~~L~~agvD~ivID~a~g~s~~----------~-------~~~ik~ik~~~----------~-~~~viaGNV~T---- 159 (352)
T PF00478_consen 112 RAEALVEAGVDVIVIDSAHGHSEH----------V-------IDMIKKIKKKF----------P-DVPVIAGNVVT---- 159 (352)
T ss_dssp HHHHHHHTT-SEEEEE-SSTTSHH----------H-------HHHHHHHHHHS----------T-TSEEEEEEE-S----
T ss_pred HHHHHHHcCCCEEEccccCccHHH----------H-------HHHHHHHHHhC----------C-CceEEecccCC----
Confidence 345567899999887655544222 1 12344555554 2 34578888744
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec---------------CCCHHHHHHHHHHHHhcCCCcc
Q 020275 139 LADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET---------------IPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 139 l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET---------------~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.++++.|.++|+|.+-+-. .|.+.-+..+.+++++. +.|
T Consensus 160 ------------------------~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~--~v~ 213 (352)
T PF00478_consen 160 ------------------------YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDY--GVP 213 (352)
T ss_dssp ------------------------HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT--TSE
T ss_pred ------------------------HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhc--cCc
Confidence 4577789999999997762 34333333344545444 488
Q ss_pred EEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 204 SWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 204 v~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
++. |.+. ..-.+++..+.. +.++|.+-=
T Consensus 214 iIA-----DGGi----~~sGDi~KAla~--GAd~VMlG~ 241 (352)
T PF00478_consen 214 IIA-----DGGI----RTSGDIVKALAA--GADAVMLGS 241 (352)
T ss_dssp EEE-----ESS-----SSHHHHHHHHHT--T-SEEEEST
T ss_pred eee-----cCCc----Ccccceeeeeee--cccceeech
Confidence 873 1111 233466666642 566666543
No 298
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=58.29 E-value=1e+02 Score=28.28 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHH--------------------HHHHHhcCCCccEEEEEEecCCCCCCCC
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQAL--------------------VELLEEENIQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~--------------------~~~~~~~~~~~pv~is~~~~~~~~l~~G 219 (328)
++|++..+...+.|+|++ -|..+...+.-+ ++.+.++ ++|+++|. .+
T Consensus 56 e~~~~L~~~~~~~gi~f~--stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~t--gkPvIlST---------G~ 122 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFF--STPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKT--GKPVILST---------GM 122 (241)
T ss_dssp HHHHHHHHHHHHTT-EEE--EEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT---S-EEEE----------TT
T ss_pred HHHHHHHHHHHHcCCEEE--ECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHh--CCcEEEEC---------CC
Confidence 345655566666677665 466666555544 2333333 69999997 33
Q ss_pred CCHH---HHHHHHHhcCCceEEEECCCC--h----hhhHHHHHHHHhhcCCeEEE
Q 020275 220 ESFK---ECLDIINKSGKVNAVGINCAP--P----QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 220 ~~~~---~~~~~~~~~~~~~~iGvNC~~--p----~~~~~~l~~l~~~~~~pl~~ 265 (328)
.+++ ++++.+........+.+=|++ | +.=+..|+.|++..+.|++.
T Consensus 123 stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~ 177 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGY 177 (241)
T ss_dssp --HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEe
Confidence 4444 566666444567788899974 3 22345677788777777654
No 299
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=58.27 E-value=1.8e+02 Score=27.92 Aligned_cols=223 Identities=17% Similarity=0.168 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee-
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS- 131 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs- 131 (328)
.+.+.+.-++-++.|-.-|..+-.-..........++ -..++.++++..+++. .+.+|...
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~---~~g~v~rair~iK~~~---------------p~l~vi~DV 119 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYN---PDGLVQRAIRAIKKAF---------------PELGVITDV 119 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccC---CCCHHHHHHHHHHHhC---------------CCcEEEEee
Confidence 3566677788899998866554331111111111111 1346777777777542 23455543
Q ss_pred -cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC-CccEEEEEE
Q 020275 132 -IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI-QIPSWICFS 209 (328)
Q Consensus 132 -iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~-~~pv~is~~ 209 (328)
+-||-..-++|---.| .++-++-.+...+|+-.++++|+|++.==-|-+ -.+.++.+++.+.+. +.|++ |-+
T Consensus 120 cLc~YT~hGHcGil~~g----~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMD-GrV~aIR~aLd~~g~~~v~Im-SYs 193 (323)
T PRK09283 120 CLDEYTSHGHCGILEDG----YVDNDETLELLAKQALSQAEAGADIVAPSDMMD-GRVGAIREALDEAGFTDVPIM-SYS 193 (323)
T ss_pred eccCCCCCCceecccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEcccccc-cHHHHHHHHHHHCCCCCCcee-ecH
Confidence 5555544333211112 245567777778888889999999998555554 355777777777653 34544 432
Q ss_pred ecC-------------------C--CCCCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEE
Q 020275 210 SVD-------------------G--ENAPSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 210 ~~~-------------------~--~~l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~y 266 (328)
.+= + .-.+|-..-.++++.+. -..+++.+.|-=..| .+.+++.+++.++.|+.+|
T Consensus 194 aKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~~PvaaY 271 (323)
T PRK09283 194 AKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALP--YLDIIRRVKDEFNLPVAAY 271 (323)
T ss_pred HHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHhcCCCCEEEE
Confidence 210 1 01222233445554432 124788888876544 4577788888888999999
Q ss_pred eCCCCc---cCCccccccCCCCCChh-HHHHHHHHHHHcCCeEE
Q 020275 267 PNSGEV---WDGRAKKWLPSKCLGDG-KFESFATRWRDSGAKLI 306 (328)
Q Consensus 267 pN~g~~---~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~ii 306 (328)
--+|+- .-...+.|+ +.. .+.|....+..+|+.+|
T Consensus 272 qVSGEYaMikaAa~~G~~-----D~~~~~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 272 QVSGEYAMIKAAAQNGWI-----DEERVVLESLLSIKRAGADGI 310 (323)
T ss_pred EccHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCCCEE
Confidence 999961 122233454 333 47777888899999776
No 300
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=57.99 E-value=1.2e+02 Score=27.87 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC------CCCCHHHHHHHHHhcCCce
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAP------SGESFKECLDIINKSGKVN 236 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~~~~~~~~~~~~~ 236 (328)
.+.++.|++.|++-+++-|+. +.+-.-+.+++++++ -.+++++.++++.... ++.++.+.++.+.. .+..
T Consensus 87 ~~~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~-~g~~ 162 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE-VGLA 162 (241)
T ss_pred HHHHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccccccccccccCCHHHHHHHHHh-cCCC
Confidence 567888999999999999987 566677778888886 6788899988754333 44577777777754 3444
Q ss_pred EEEECCCChhhh-----HHHHHHHHhhcCCeEEE
Q 020275 237 AVGINCAPPQFV-----ENLICYFKELTKKAIVV 265 (328)
Q Consensus 237 ~iGvNC~~p~~~-----~~~l~~l~~~~~~pl~~ 265 (328)
.|.+-=.+-+-+ ..+++++.+.++.|+++
T Consensus 163 ~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipvia 196 (241)
T COG0106 163 HILYTDISRDGTLSGPNVDLVKELAEAVDIPVIA 196 (241)
T ss_pred eEEEEecccccccCCCCHHHHHHHHHHhCcCEEE
Confidence 444322221111 24556666666778655
No 301
>PRK00784 cobyric acid synthase; Provisional
Probab=57.77 E-value=90 Score=31.56 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHH------HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEA------QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~------~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
++.+.+.+.|+. + ..+.|++++|-...+.|. ....++++.. +.||++-..+. .|.++..+.
T Consensus 110 ~~~~~I~~~~~~----l-~~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l--~~PVILV~~~~------~g~~~~~i~ 176 (488)
T PRK00784 110 RLLEAVLESLDR----L-AAEYDVVVVEGAGSPAEINLRDRDIANMGFAEAA--DAPVILVADID------RGGVFASLV 176 (488)
T ss_pred hhHHHHHHHHHH----H-HhcCCEEEEECCCCccccCcccCCchhHHHHHHc--CCCEEEEEeCC------cCcHHHHHH
Confidence 455666555542 3 247899999965222221 2355777766 49998855431 233455443
Q ss_pred ---HHHHhc--CCceEEEECCCChh--hhHHHHHHHHhhcCCe
Q 020275 227 ---DIINKS--GKVNAVGINCAPPQ--FVENLICYFKELTKKA 262 (328)
Q Consensus 227 ---~~~~~~--~~~~~iGvNC~~p~--~~~~~l~~l~~~~~~p 262 (328)
..+... ..+.++-+|++.++ .+....+.+.+..+.|
T Consensus 177 ~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gip 219 (488)
T PRK00784 177 GTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVP 219 (488)
T ss_pred HHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 233311 25778999998743 2344544455544444
No 302
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=57.73 E-value=1.8e+02 Score=27.78 Aligned_cols=223 Identities=16% Similarity=0.173 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe-
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSR-GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA- 130 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG- 130 (328)
.+.+.+.-++-++.|-.-|..+- .. . .+.. |-+.-.-..++.++++..+++. .+..|..
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFg--v~-~-~Kd~~gs~A~~~~g~v~~air~iK~~~---------------p~l~vi~D 110 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVILFG--IP-E-HKDEIGSEAYDPDGIVQRAIRAIKEAV---------------PELVVITD 110 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC--CC-C-CCCCCcccccCCCChHHHHHHHHHHhC---------------CCcEEEEe
Confidence 46667777888899987555432 21 1 1221 2110011347777887777553 2334443
Q ss_pred -ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCC-CccEEEEE
Q 020275 131 -SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENI-QIPSWICF 208 (328)
Q Consensus 131 -siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~-~~pv~is~ 208 (328)
|+-||-..-++|--..+ .++-++-.+...+|+-..+++|+|++.==-|-+ -.+.++.+++.+.+- +.|++ |-
T Consensus 111 vcLc~YT~hGHcGil~~~----~idND~Tl~~L~k~Als~A~AGADiVAPSdMMD-GrV~aIR~aLd~~g~~~v~Im-sY 184 (314)
T cd00384 111 VCLCEYTDHGHCGILKDD----YVDNDATLELLAKIAVSHAEAGADIVAPSDMMD-GRVAAIREALDEAGFSDVPIM-SY 184 (314)
T ss_pred eeccCCCCCCcceeccCC----cCccHHHHHHHHHHHHHHHHcCCCeeecccccc-cHHHHHHHHHHHCCCCCCcee-ec
Confidence 45566544333221111 245577777788888889999999998555544 356777788877653 35544 33
Q ss_pred EecC-------------------CC--CCCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 209 SSVD-------------------GE--NAPSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 209 ~~~~-------------------~~--~l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
+.+= +. -.+|-..-.+|++.+. -..+.+.+.|-=..| .+.+++.+++.++.|+.+
T Consensus 185 saKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~~Pvaa 262 (314)
T cd00384 185 SAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA--YLDIIRDVRERFDLPVAA 262 (314)
T ss_pred HHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHhcCCCEEE
Confidence 2110 10 0122223345555432 124788888876543 457778888888999999
Q ss_pred EeCCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 266 YPNSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 266 ypN~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
|--+|+- .-...+.|+.. ...+.|....++.+|+.+|
T Consensus 263 YqVSGEYaMikaAa~~G~id~----~~~~~Esl~~~kRAGAd~I 302 (314)
T cd00384 263 YNVSGEYAMIKAAAKNGWIDE----ERVVLESLTSIKRAGADLI 302 (314)
T ss_pred EEccHHHHHHHHHHHcCCccH----HHHHHHHHHHHHhcCCCEE
Confidence 9999951 12223446432 2347777788899999876
No 303
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=57.73 E-value=1.3e+02 Score=26.40 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+++.+.+.|+|.+++-+ .....+++.+++.++..+ +.+++.+. +.+++.+.. + .+++.+|+|=
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~-----------~~~e~~~~~-~-~g~~~i~~t~ 149 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVH-----------DEEELERAL-A-LGAKIIGINN 149 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEEC-----------CHHHHHHHH-H-cCCCEEEEeC
Confidence 378889999999997543 333477788888777665 55554442 334444433 3 3678888883
Q ss_pred CC----hhhhHHHHHHHHhhc--CCeEEE
Q 020275 243 AP----PQFVENLICYFKELT--KKAIVV 265 (328)
Q Consensus 243 ~~----p~~~~~~l~~l~~~~--~~pl~~ 265 (328)
.. +... ..++++.+.. +.|+++
T Consensus 150 ~~~~~~~~~~-~~~~~l~~~~~~~~pvia 177 (217)
T cd00331 150 RDLKTFEVDL-NTTERLAPLIPKDVILVS 177 (217)
T ss_pred CCccccCcCH-HHHHHHHHhCCCCCEEEE
Confidence 21 1122 4556665542 345433
No 304
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=57.61 E-value=29 Score=34.39 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHH
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAE 94 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~ 94 (328)
+.+|+-..-++ +- -+.|||+++| |+ +..+++.|++.+.++
T Consensus 74 Lk~~eGr~~l~-~L-v~~ADVvien-~r--pg~~~rlGl~~e~L~ 113 (416)
T PRK05398 74 TKTPEGKEVLE-KL-IREADVLVEN-FG--PGALDRMGFTWERIQ 113 (416)
T ss_pred CCCHHHHHHHH-HH-HhcCCEEEEC-CC--cchHHHcCCCHHHHH
Confidence 35555433332 22 3569999999 76 667888999875443
No 305
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=57.60 E-value=1.8e+02 Score=27.87 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc-CCceEEEECCCC-----------hhh
Q 020275 180 ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS-GKVNAVGINCAP-----------PQF 247 (328)
Q Consensus 180 ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGvNC~~-----------p~~ 247 (328)
+.+++. .+...++-+++...+.|+.+|+.-.. .+..+.+.++.++.+... ..++++=+|=+. |+.
T Consensus 114 ~Gl~n~-G~~~~l~~i~~~~~~~~i~vsi~~~~--~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~ 190 (335)
T TIGR01036 114 MGFNNH-GADVLVERLKRARYKGPIGINIGKNK--DTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAE 190 (335)
T ss_pred CCCCCh-hHHHHHHHHhhccCCCcEEEEEeCCC--CCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHH
Confidence 444443 33334444443333589999985331 123444556655554332 136676665332 345
Q ss_pred hHHHHHHHHhhcC-------CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCC
Q 020275 248 VENLICYFKELTK-------KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGA 303 (328)
Q Consensus 248 ~~~~l~~l~~~~~-------~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 303 (328)
+..+++.+++..+ .|++++--. . ++.+++.+.++...+.|+
T Consensus 191 ~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP-------------~--~~~~~i~~ia~~~~~~Ga 238 (335)
T TIGR01036 191 LRDLLTAVKQEQDGLRRVHRVPVLVKIAP-------------D--LTESDLEDIADSLVELGI 238 (335)
T ss_pred HHHHHHHHHHHHHhhhhccCCceEEEeCC-------------C--CCHHHHHHHHHHHHHhCC
Confidence 6667777665554 787764321 1 233456666666677765
No 306
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=57.44 E-value=30 Score=34.17 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
+..|+-..-++ + |-+.|||+..| |+ +..+++.|++.+.++++ ++-+|.
T Consensus 73 Lk~~~g~~~l~-~-Lv~~ADVvien-~r--pg~~~rlGL~~~~L~~~---------------------------nP~LV~ 120 (415)
T TIGR03253 73 TKTPEGKEVLE-E-LIKKADVMVEN-FG--PGALDRMGFTWEYIQEI---------------------------NPRLIL 120 (415)
T ss_pred CCCHHHHHHHH-H-HHhhCCEEEEC-CC--CChHHHcCCCHHHHHHh---------------------------CCCeEE
Confidence 34554333332 2 23569999998 55 56788889987655331 456888
Q ss_pred eecCCccc
Q 020275 130 ASIGSYGA 137 (328)
Q Consensus 130 GsiGP~g~ 137 (328)
.|+..||.
T Consensus 121 ~sisgfG~ 128 (415)
T TIGR03253 121 ASIKGFGE 128 (415)
T ss_pred EEeeecCC
Confidence 88888875
No 307
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=56.99 E-value=1.6e+02 Score=27.78 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.++++.+.+.+|+++.+ ++....+ .++.+++.+ .+++..+ .+++++....+ .++++|.+..
T Consensus 77 ~~~~~~~~~~~v~~v~~-~~g~p~~---~i~~lk~~g--~~v~~~v-----------~s~~~a~~a~~--~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTT-GAGNPGK---YIPRLKENG--VKVIPVV-----------ASVALAKRMEK--AGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEE-cCCCcHH---HHHHHHHcC--CEEEEEc-----------CCHHHHHHHHH--cCCCEEEEEC
Confidence 56889899999999987 4555543 566677664 6776433 23455544333 3677776644
Q ss_pred C----C--hhhhHHHHHHHHhhcCCeEEE
Q 020275 243 A----P--PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 243 ~----~--p~~~~~~l~~l~~~~~~pl~~ 265 (328)
. + ......+++++.+..+.|+++
T Consensus 138 ~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 138 MESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred cccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 2 2 112457778887777778654
No 308
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.82 E-value=1.2e+02 Score=27.67 Aligned_cols=96 Identities=8% Similarity=-0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCeEEEecC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCC------CCCCCHHHHHHHHHhcCC
Q 020275 163 RRRLQVLVESGPDLLAFETI--PNKLEAQALVELLEEENIQIPSWICFSSVDGENA------PSGESFKECLDIINKSGK 234 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~~~~~~~~~~~ 234 (328)
.+.++.+.+.|+|-+++-|. .+++-++.+ .+++ +. +++|+.++++.-. ..+.++.+.+..+.+ .+
T Consensus 85 ~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~-~~-ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~-~g 157 (241)
T PRK14114 85 LDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEID-VE-PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE-YG 157 (241)
T ss_pred HHHHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhC-CC-EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-cC
Confidence 45677788899999888764 555444444 2344 33 7899988664222 244567778877765 45
Q ss_pred ceEEEECCCChhh-----hHHHHHHHHhhcCCeEEE
Q 020275 235 VNAVGINCAPPQF-----VENLICYFKELTKKAIVV 265 (328)
Q Consensus 235 ~~~iGvNC~~p~~-----~~~~l~~l~~~~~~pl~~ 265 (328)
+..|-++-..-+- =..+++.+.+..+.|+++
T Consensus 158 ~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pvia 193 (241)
T PRK14114 158 LEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFA 193 (241)
T ss_pred CCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEE
Confidence 5666666543211 134567777666677765
No 309
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=56.53 E-value=75 Score=31.66 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe---cCCCHHH-HHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH
Q 020275 148 NYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE---TIPNKLE-AQALVELLEEENIQIPSWICFSSVDGENAPSGESFK 223 (328)
Q Consensus 148 ~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E---T~~~~~E-~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~ 223 (328)
|++...+.+.++.+++-. +.+.+|..|++- .+.+-++ ++++++++++.+.++|++|-+ .|+..+
T Consensus 323 D~GG~a~~~~v~~a~~ii---~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~ 390 (422)
T PLN00124 323 DVGGNASEQQVVEAFKIL---TSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVD 390 (422)
T ss_pred ecCCCCCHHHHHHHHHHH---hcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHH
Confidence 344446788888888732 457889998763 3444433 457788898877789999866 688888
Q ss_pred HHHHHHHh
Q 020275 224 ECLDIINK 231 (328)
Q Consensus 224 ~~~~~~~~ 231 (328)
+..+.+.+
T Consensus 391 ~g~~~l~~ 398 (422)
T PLN00124 391 QGKRILKE 398 (422)
T ss_pred HHHHHHHh
Confidence 88888865
No 310
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=56.50 E-value=1.9e+02 Score=27.77 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCeEEEecC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH---HHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLLAFETI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD---IINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~iGv 240 (328)
.++...+.|+|.|-+-|- ...+.++..++.+|+.+ .-+.+++.. - +..+.+..++ .+.+ .+++.|.+
T Consensus 93 dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G--~~v~~~l~~--a----~~~~~e~l~~~a~~~~~-~Ga~~i~i 163 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELG--MDTVGFLMM--S----HMAPPEKLAEQAKLMES-YGAQCVYV 163 (337)
T ss_pred HHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCC--CeEEEEEEe--c----cCCCHHHHHHHHHHHHh-CCCCEEEe
Confidence 356667789999876653 33345556677777765 555555542 2 2234444444 3333 46666555
Q ss_pred CCC----ChhhhHHHHHHHHhhc--CCeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELT--KKAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~--~~pl~~ypN 268 (328)
-=+ .|+.+...++.+++.. +.|+++...
T Consensus 164 ~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 164 VDSAGALLPEDVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 433 3999999999998876 467766443
No 311
>PRK00208 thiG thiazole synthase; Reviewed
Probab=56.19 E-value=1.7e+02 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCCh
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATI 80 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~ 80 (328)
..+|+.+++. ...+|++|++.+.-+.+.
T Consensus 20 y~s~~~~~~a---i~asg~~ivTvalrR~~~ 47 (250)
T PRK00208 20 YPSPQVMQEA---IEASGAEIVTVALRRVNL 47 (250)
T ss_pred CCCHHHHHHH---HHHhCCCeEEEEEEeecC
Confidence 3567777766 567999999988766654
No 312
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=56.06 E-value=37 Score=30.78 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 160 DFHRRRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
..|.+++...+++|.|++. |.. .+.++.+.+++++++.+ .+++|.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~g--~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSSG--RKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhcC--CEEEEC
Confidence 5689999999999999998 554 27788899999998865 777765
No 313
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.03 E-value=70 Score=32.37 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 161 FHRRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
...++++.|+++|+|.|.+-+ -.+..-...+++.+++.-.++|+++.+ +.+.+.+...++. ++++|.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~~l~~~--G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVRDLLEA--GANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHHHHHHh--CCCEEE
Confidence 346899999999999999984 344444555566666643368999733 4556666665543 566653
No 314
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.76 E-value=1.7e+02 Score=27.08 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCeEEEecCCCH---------------HHHHHHHHHHHhcCCCccEEE--EEEecCCCCCCCCCCHHHHHH
Q 020275 165 RLQVLVESGPDLLAFETIPNK---------------LEAQALVELLEEENIQIPSWI--CFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~---------------~E~~a~~~~~~~~~~~~pv~i--s~~~~~~~~l~~G~~~~~~~~ 227 (328)
-++...+.|+|.|-+-.-.|- +.++.+++.+++.+...-+.+ +|.+.+.++. +-..+.+.++
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~ 156 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAE 156 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHH
Confidence 456666789998766644442 334445667776663222223 3445554443 2222334444
Q ss_pred HHHhcCCceEEEECCC----ChhhhHHHHHHHHhhcC-CeEEEEeC
Q 020275 228 IINKSGKVNAVGINCA----PPQFVENLICYFKELTK-KAIVVYPN 268 (328)
Q Consensus 228 ~~~~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~-~pl~~ypN 268 (328)
.+.+ .+++.|.+-=+ .|..+..+++.+++..+ .|+.+.-.
T Consensus 157 ~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 201 (274)
T cd07938 157 RLLD-LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFH 201 (274)
T ss_pred HHHH-cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 4443 46666666543 49999999999987754 57766443
No 315
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=55.75 E-value=41 Score=33.99 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
+.++.=+++|+|+|+---|.+++-....+..+|+.+.+.|++-.+.
T Consensus 172 ~yLk~KvdaGaDFIiTQlFYd~e~flkfv~~cR~~gi~~PIvPGIM 217 (590)
T KOG0564|consen 172 PYLKEKVDAGADFIITQLFYDVETFLKFVKDCRAAGINVPIVPGIM 217 (590)
T ss_pred HHHHHhhcccchhhhhhhhcCHHHHHHHHHHHHHhCCCCCcccccc
Confidence 3445556799999998889999999999999999988888876554
No 316
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=55.71 E-value=1.7e+02 Score=29.10 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCC---CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIP---NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~---~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
++|.+.++.|++.|||-|-|-.|. ++.++-..+.++|+.- ++|+-+--. --+|.+....+..+.
T Consensus 156 e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lHtH------~TsG~a~m~ylkAvE 222 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELHTH------ATSGMAEMTYLKAVE 222 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEecc------cccchHHHHHHHHHH
Confidence 678899999999999999987654 6678888888888652 355443332 235665544444443
No 317
>PRK14847 hypothetical protein; Provisional
Probab=55.18 E-value=1.7e+02 Score=28.29 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=15.1
Q ss_pred HHHHHHHHhccceeecCCcCCC
Q 020275 58 RVHLEYLEAGADILVTSSYQAT 79 (328)
Q Consensus 58 ~iH~~yl~AGAdiI~TnTy~as 79 (328)
+|-+.--++|.|.|..-.=.++
T Consensus 58 ~IA~~L~~lGVd~IEvG~Pa~s 79 (333)
T PRK14847 58 RLFEQLVAVGLKEIEVAFPSAS 79 (333)
T ss_pred HHHHHHHHcCCCEEEeeCCCCC
Confidence 4555567889999987644444
No 318
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.10 E-value=89 Score=29.57 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|+...+++|+|+|++..| ++++++.+++.++. .+.+..+ .|-+++.+.++.. .+++.|-+-.
T Consensus 215 leea~eA~~aGaDiImLDnm-spe~l~~av~~~~~-----~~~lEaS--------GGIt~~ni~~yA~--tGVD~IS~ga 278 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNF-TLDMMREAVRVTAG-----RAVLEVS--------GGVNFDTVRAFAE--TGVDRISIGA 278 (294)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhcC-----CeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 45666677899999999998 66888888876642 2344443 4677776666553 4788777666
No 319
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=55.05 E-value=2e+02 Score=27.59 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHH-------HHHHH-hcCCCeEEEec---CC-----CHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 157 KLKDFHRRR-------LQVLV-ESGPDLLAFET---IP-----NKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 157 e~~~~h~~q-------i~~l~-~~gvD~i~~ET---~~-----~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
++.+.|.+. +.... +.|+|+|-+-. -| +..|+..+++.+++.- ++|++|-.+
T Consensus 65 ~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav-d~PL~Id~s 132 (319)
T PRK04452 65 AVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV-DVPLIIGGS 132 (319)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC-CCCEEEecC
Confidence 566666554 22222 68999998874 44 2455778888887653 799875443
No 320
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=54.87 E-value=1.9e+02 Score=27.15 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEecC--C---------CHHHHHHHHHHHHhcC--CCccEEEEEEecCCCCCCCC
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFETI--P---------NKLEAQALVELLEEEN--IQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~--~---------~~~E~~a~~~~~~~~~--~~~pv~is~~~~~~~~l~~G 219 (328)
.+.++++..-+..++.+++.||= .+|.. | ..+.++++++++++.. .+.-+.+.++..... +.
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt--~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~---~~ 140 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVV--YAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHL---SP 140 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE--EEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCC---CH
Confidence 47788988889899999999983 45532 2 2234445455544321 124444444432211 11
Q ss_pred CCHHHHHHHHHhc--CCceEEEECCCC----hhhhHHHHHHHHhhcCCeEEEE
Q 020275 220 ESFKECLDIINKS--GKVNAVGINCAP----PQFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 220 ~~~~~~~~~~~~~--~~~~~iGvNC~~----p~~~~~~l~~l~~~~~~pl~~y 266 (328)
+...+.++.+.+. ..+.++++.|.. ++.+..+++..++. +.|+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~-g~~v~~H 192 (325)
T cd01320 141 ESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA-GLRLTAH 192 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC-CCceEEe
Confidence 2344444444321 246778888753 34555555555442 4555443
No 321
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=54.82 E-value=58 Score=32.20 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=15.5
Q ss_pred CeEEeecCCC--ChHHHHHHHHHHh
Q 020275 303 AKLIGGCCRT--TPSTIQAVSKVLK 325 (328)
Q Consensus 303 ~~iiGGCCGt--~P~hI~al~~~l~ 325 (328)
++|||.++-+ .|.++++|++.|+
T Consensus 165 VNiiG~~~~~~~~~~d~~ei~~lL~ 189 (430)
T cd01981 165 VNLIGPSSLGFHNRHDCRELKRLLH 189 (430)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHH
Confidence 7778877643 3677777776664
No 322
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=54.59 E-value=82 Score=28.52 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHHhc--CCCccEEEEEEecCCCCCCCCCCHHHH---HHHHH-hcCCce
Q 020275 164 RRLQVLVE-SGPDLLAFETIPNKLEAQALVELLEEE--NIQIPSWICFSSVDGENAPSGESFKEC---LDIIN-KSGKVN 236 (328)
Q Consensus 164 ~qi~~l~~-~gvD~i~~ET~~~~~E~~a~~~~~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~-~~~~~~ 236 (328)
..++.++. ..+|+ ++|+-++.-+..+-+++.+. +..++|+|.+.+..+. ...|.+.+++ +..+. ..+++.
T Consensus 79 NK~k~i~~~~~~~~--ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~-~K~Gv~~~e~~~l~~~i~~~~~~L~ 155 (227)
T cd06822 79 NKVKKLLKVPNLYM--VETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEE-SKSGLEPSEAVELVKHIIEECPNLK 155 (227)
T ss_pred hhHHHHhccccccE--EEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-CCCCCCHHHHHHHHHHHHhhCCCce
Confidence 34555543 34564 59999999888888888776 6678999999875432 3578776554 44454 556788
Q ss_pred EEEECCCCh
Q 020275 237 AVGINCAPP 245 (328)
Q Consensus 237 ~iGvNC~~p 245 (328)
..|+-|..|
T Consensus 156 l~GLMt~~~ 164 (227)
T cd06822 156 FSGLMTIGS 164 (227)
T ss_pred EEEEEeeCC
Confidence 899999754
No 323
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=54.52 E-value=24 Score=33.26 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCccEE
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
-+|+++..++|+|.|++|. ..+.+|++.+++.+. .++|+.
T Consensus 169 I~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~---~p~pv~ 209 (290)
T TIGR02321 169 VRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP---GKVPLV 209 (290)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC---CCCCeE
Confidence 5688999999999999997 589999888887653 246775
No 324
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.45 E-value=2.1e+02 Score=27.63 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee-cCCcccCc
Q 020275 61 LEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS-IGSYGAYL 139 (328)
Q Consensus 61 ~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs-iGP~g~~l 139 (328)
++-++.|||.+...-|.-+.. -.+++..-.+...++.+++.. .+- .+++=- +-|.+...
T Consensus 113 e~a~~~GAdAVk~lv~~~~d~-----------~~~~~~~~~~~l~rv~~ec~~--------~gi-PlllE~l~y~~~~~~ 172 (340)
T PRK12858 113 RRIKEAGADAVKLLLYYRPDE-----------DDAINDRKHAFVERVGAECRA--------NDI-PFFLEPLTYDGKGSD 172 (340)
T ss_pred HHHHHcCCCEEEEEEEeCCCc-----------chHHHHHHHHHHHHHHHHHHH--------cCC-ceEEEEeccCCCccc
Confidence 446899999999888865321 112222222222333332211 122 344432 34444444
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEecC---------------CCHHHHHHHHHHHHhcCCCc
Q 020275 140 ADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVE--SGPDLLAFETI---------------PNKLEAQALVELLEEENIQI 202 (328)
Q Consensus 140 ~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~--~gvD~i~~ET~---------------~~~~E~~a~~~~~~~~~~~~ 202 (328)
.+..+|.. ...+ ....-++.+.+ .|+|++=+|-- .+..|+...++-+.+. .++
T Consensus 173 ~~~~~~a~-----~~p~----~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a-~~~ 242 (340)
T PRK12858 173 KKAEEFAK-----VKPE----KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDA-TDL 242 (340)
T ss_pred cccccccc-----cCHH----HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhh-CCC
Confidence 44333311 1222 33455677774 89999977632 2455555544443333 368
Q ss_pred cEEEE
Q 020275 203 PSWIC 207 (328)
Q Consensus 203 pv~is 207 (328)
|+++.
T Consensus 243 P~vvl 247 (340)
T PRK12858 243 PFIFL 247 (340)
T ss_pred CEEEE
Confidence 98863
No 325
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=54.42 E-value=2.1e+02 Score=27.74 Aligned_cols=191 Identities=17% Similarity=0.213 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCc--ccCcCCCCCCCCCCCCC--------CC----HHHHHH
Q 020275 95 SLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSY--GAYLADGSEYSGNYGPG--------VD----LEKLKD 160 (328)
Q Consensus 95 ~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~--g~~l~~~~eY~g~y~~~--------~~----~~e~~~ 160 (328)
..+-.++++.|+-. .....+|+++-||. .+|+-.|.. +.+|... -. .+.+.+
T Consensus 124 ~~V~~ai~~lrekl-------------~~~~pLIgf~gsP~TlAsymieg~~-s~~~~~~k~~m~~~P~~~~~ll~kltd 189 (352)
T COG0407 124 PYVLDAIKLLREKL-------------GGEVPLIGFAGSPWTLASYLIEGGG-SKDFSKTKAMMYTEPDAVHALLDKLTD 189 (352)
T ss_pred HHHHHHHHHHHHHc-------------CCCCCeEEecCCHHHHHHHHHcCCC-cccHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 35566676666432 22356999999994 455543311 1222110 00 122223
Q ss_pred HHHHHHHHHHhcCCCeE-EEec------CCCHHHH-----HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 161 FHRRRLQVLVESGPDLL-AFET------IPNKLEA-----QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i-~~ET------~~~~~E~-----~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
.--.-++.++++|+|.| +|++ +.+..|. .-+++.+++.+.+ +.+|-|. . |. ...+..
T Consensus 190 ~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii~f~-~-------ga--~~~l~~ 258 (352)
T COG0407 190 AVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVIHFC-K-------GA--GHLLED 258 (352)
T ss_pred HHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEEEEC-C-------Cc--HHHHHH
Confidence 33334566778999997 4444 1122222 1234445544422 3444553 1 22 123444
Q ss_pred HHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE---
Q 020275 229 INKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL--- 305 (328)
Q Consensus 229 ~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i--- 305 (328)
+.+ .+.+++|+-+.-+ +..+.+. ......++.|-- + ..+. .+++...+.+++.++.|...
T Consensus 259 m~~-~g~d~l~vdw~v~--l~~a~~~----~~~~~~lqGNld----P---~lL~---~~~~~i~~~~~~iL~~~~~~~~~ 321 (352)
T COG0407 259 MAK-TGFDVLGVDWRVD--LKEAKKR----LGDKVALQGNLD----P---ALLY---APPEAIKEEVKRILEDGGDGSGY 321 (352)
T ss_pred HHh-cCCcEEeeccccC--HHHHHHH----hCCCceEEeccC----h---Hhhc---CCHHHHHHHHHHHHHHhccCCCc
Confidence 544 4688999888654 3333333 322367777742 1 0111 14667888888888887754
Q ss_pred -EeecCC----CChHHHHHHHHHHhcC
Q 020275 306 -IGGCCR----TTPSTIQAVSKVLKER 327 (328)
Q Consensus 306 -iGGCCG----t~P~hI~al~~~l~~~ 327 (328)
+==-|| |.|++++++-+++++.
T Consensus 322 IfnlGhGI~P~tp~e~v~~lve~v~~~ 348 (352)
T COG0407 322 IFNLGHGILPETPPENVKALVEAVHEY 348 (352)
T ss_pred eecCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 222255 5779999999988754
No 326
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=54.32 E-value=1.6e+02 Score=26.22 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+.++..++.++|++=+|--. .....+++.+++. +..+++|+.-.+ .+++-..+.+.+..+.. .+++.+=+-+
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~--~~kiI~S~H~f~--~tp~~~~l~~~~~~~~~-~gadivKla~ 151 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKG--NTKIIGSYHDFS--GTPSDEELVSRLEKMAA-LGADIVKIAV 151 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhC--CCEEEEEeccCC--CCcCHHHHHHHHHHHHH-hCCCEEEEEe
Confidence 444555666789999999543 3344444444433 589999997322 12221223333443333 3455555555
Q ss_pred C--ChhhhHHHHHHHHhhc---CCeEEEEeCC
Q 020275 243 A--PPQFVENLICYFKELT---KKAIVVYPNS 269 (328)
Q Consensus 243 ~--~p~~~~~~l~~l~~~~---~~pl~~ypN~ 269 (328)
. ++.....+++...... +.|++++.-+
T Consensus 152 ~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 152 MANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4 4666556665544332 3588877754
No 327
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=54.30 E-value=1.9e+02 Score=27.15 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCeEEEecC--------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFETI--------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~--------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
.+.++.+.++||..|.+|-. -+.+|...=++++++...+.+++|---.+ ... ...++++++.
T Consensus 91 ~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD--a~~--~~g~deAI~R 166 (285)
T TIGR02317 91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTD--ARA--VEGLDAAIER 166 (285)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcC--ccc--ccCHHHHHHH
Confidence 34788899999999999963 25677777777777654355677665543 222 2348888876
Q ss_pred HHh--cCCceEEEECCCC-hhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 229 INK--SGKVNAVGINCAP-PQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 229 ~~~--~~~~~~iGvNC~~-p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
... ..++++|-+-+.. ++.+..+.+ ..+.|+.+-+-
T Consensus 167 a~ay~~AGAD~vfi~g~~~~e~i~~~~~----~i~~Pl~~n~~ 205 (285)
T TIGR02317 167 AKAYVEAGADMIFPEALTSLEEFRQFAK----AVKVPLLANMT 205 (285)
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHHHH----hcCCCEEEEec
Confidence 532 2477888877643 455544444 34578755443
No 328
>PRK06498 isocitrate lyase; Provisional
Probab=54.09 E-value=28 Score=35.18 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.4
Q ss_pred HhcCCCeEEEec-CCCHHHHHHHHHHHHhc
Q 020275 170 VESGPDLLAFET-IPNKLEAQALVELLEEE 198 (328)
Q Consensus 170 ~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~ 198 (328)
...++|+||+|| -|++.+++..++.+++.
T Consensus 342 ~apyADLlW~ET~~P~~~qa~~fa~~Ir~~ 371 (531)
T PRK06498 342 LQNGADLLWIETEKPHVAQIAGMVNRIREV 371 (531)
T ss_pred hcCcCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 358999999998 89999999999999985
No 329
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.95 E-value=2.2e+02 Score=27.63 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
++.|.+.++-.. .+|+|+|.-.+-+.+.... ++..++.+..| .+-.+|+|
T Consensus 108 ~d~er~~~L~~~--~~g~D~iviD~AhGhs~~~-----------------i~~ik~ik~~~-----------P~~~vIaG 157 (346)
T PRK05096 108 ADFEKTKQILAL--SPALNFICIDVANGYSEHF-----------------VQFVAKAREAW-----------PDKTICAG 157 (346)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEECCCCcHHHH-----------------HHHHHHHHHhC-----------CCCcEEEe
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--------EEecC-------CCHHHHHHHHHHH
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLL--------AFETI-------PNKLEAQALVELL 195 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i--------~~ET~-------~~~~E~~a~~~~~ 195 (328)
.+.. .++++.|.++|+|.+ +.=|- |.+.-+..+.+++
T Consensus 158 NV~T----------------------------~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a 209 (346)
T PRK05096 158 NVVT----------------------------GEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAA 209 (346)
T ss_pred cccC----------------------------HHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHH
Q ss_pred HhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 196 EEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 196 ~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
++.+ .|++.-=-+...+ +++..+. .+.++|.+
T Consensus 210 ~~~g--vpiIADGGi~~sG---------DI~KAla--aGAd~VMl 241 (346)
T PRK05096 210 HGLG--GQIVSDGGCTVPG---------DVAKAFG--GGADFVML 241 (346)
T ss_pred HHcC--CCEEecCCccccc---------HHHHHHH--cCCCEEEe
No 330
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=53.51 E-value=2e+02 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQ 189 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~ 189 (328)
.+++.+.+.|+|.|.+..-.++.|++
T Consensus 242 ~~~~~~~~~~~~~~s~d~~~dl~e~k 267 (335)
T cd00717 242 GLLEDLAQLGADVVGLDWRVDLDEAR 267 (335)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHH
Confidence 35777778899999888877877743
No 331
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=53.46 E-value=1.9e+02 Score=26.97 Aligned_cols=143 Identities=13% Similarity=0.161 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEE-ecCC-----CHHHHH--------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCC
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLAF-ETIP-----NKLEAQ--------ALVELLEEENIQIPSWICFSSVDGENAPSGES 221 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~~-ET~~-----~~~E~~--------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 221 (328)
+.+.+...++++.+.++|+|+|.+ |-.. +.++.+ .+++.+++. +.|+++ ..| |..
T Consensus 164 ~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~l-H~c--------G~~ 232 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH-HNC--------GDT 232 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEE-EEC--------CCc
Confidence 344444566677777889997644 3221 333332 334455443 356554 333 211
Q ss_pred HHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHc
Q 020275 222 FKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDS 301 (328)
Q Consensus 222 ~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (328)
...+..+.+ .+++++.+ .....+..+ ++..+.-..+..|-. +. ..+.. -++++..+.+++.++.
T Consensus 233 -~~~~~~l~~-~~~d~~~~--d~~~dl~~~----~~~~g~~~~i~G~id----~~--~~l~~--gt~eei~~~v~~~l~~ 296 (330)
T cd03465 233 -APILELMAD-LGADVFSI--DVTVDLAEA----KKKVGDKACLMGNLD----PI--DVLLN--GSPEEIKEEVKELLEK 296 (330)
T ss_pred -hhHHHHHHH-hCCCeEee--cccCCHHHH----HHHhCCceEEEeCcC----hH--HhhcC--CCHHHHHHHHHHHHHH
Confidence 134455544 34444332 221223333 333344455555532 11 01111 2578888888888765
Q ss_pred CC-----eEEeecCC----CChHHHHHHHHHHh
Q 020275 302 GA-----KLIGGCCR----TTPSTIQAVSKVLK 325 (328)
Q Consensus 302 G~-----~iiGGCCG----t~P~hI~al~~~l~ 325 (328)
+. -|++-.|| |.++.|+++.++++
T Consensus 297 ~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 297 LLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred HhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 43 27766665 56899999988875
No 332
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=53.34 E-value=1.7e+02 Score=26.20 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCeE-----EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCH--HHHHHHHHhcCCce
Q 020275 164 RRLQVLVESGPDLL-----AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESF--KECLDIINKSGKVN 236 (328)
Q Consensus 164 ~qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~--~~~~~~~~~~~~~~ 236 (328)
.+++.+ ..|+|++ .|+...+...+..+.+.++..-.++|+++++-...+|-...+..- .+.+..+....+++
T Consensus 16 ~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d 94 (228)
T TIGR01093 16 ATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPD 94 (228)
T ss_pred HHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 355666 6788886 234444554444444444432136899999987666533333321 12222221123567
Q ss_pred EEEECCCC-hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC-CCh
Q 020275 237 AVGINCAP-PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR-TTP 314 (328)
Q Consensus 237 ~iGvNC~~-p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG-t~P 314 (328)
.|=|--.. .+.+..+++..+....+-++=|=| | .+.-+.+++.+...+..+.|+.|+==.+- .++
T Consensus 95 ~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~-----------f--~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~ 161 (228)
T TIGR01093 95 FVDIELFLPDDAVKELINIAKKGGTKIIMSYHD-----------F--QKTPSWEEIVERLEKALSYGADIVKIAVMANSK 161 (228)
T ss_pred EEEEEccCCHHHHHHHHHHHHHCCCEEEEeccC-----------C--CCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCH
Confidence 77776543 344555555544322222222222 1 11112455777777888888755433332 244
Q ss_pred HHHHHHHH
Q 020275 315 STIQAVSK 322 (328)
Q Consensus 315 ~hI~al~~ 322 (328)
++...|-+
T Consensus 162 ~D~~~ll~ 169 (228)
T TIGR01093 162 EDVLTLLE 169 (228)
T ss_pred HHHHHHHH
Confidence 55444433
No 333
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.24 E-value=1.7e+02 Score=26.09 Aligned_cols=103 Identities=12% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|++...++|++|++ -|.+. ..+++.+++.+ +|++ +.-.++.|+....+. +...|=+-=
T Consensus 66 ~e~a~~ai~aGA~Fiv---SP~~~--~~vi~~a~~~~--i~~i-----------PG~~TptEi~~A~~~--Ga~~vK~FP 125 (201)
T PRK06015 66 AKQFEDAAKAGSRFIV---SPGTT--QELLAAANDSD--VPLL-----------PGAATPSEVMALREE--GYTVLKFFP 125 (201)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC--HHHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHHC--CCCEEEECC
Confidence 5578888899999998 34443 34666777664 8877 233678899987764 444443332
Q ss_pred CChhhh--HHHHHHHHhhcC-CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEee
Q 020275 243 APPQFV--ENLICYFKELTK-KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGG 308 (328)
Q Consensus 243 ~~p~~~--~~~l~~l~~~~~-~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGG 308 (328)
. +.+ .+.++.++.-++ .++ .|-+| .+++ .+.+|+++|+...||
T Consensus 126 a--~~~GG~~yikal~~plp~~~l--~ptGG---------------V~~~----n~~~~l~ag~~~~~g 171 (201)
T PRK06015 126 A--EQAGGAAFLKALSSPLAGTFF--CPTGG---------------ISLK----NARDYLSLPNVVCVG 171 (201)
T ss_pred c--hhhCCHHHHHHHHhhCCCCcE--EecCC---------------CCHH----HHHHHHhCCCeEEEE
Confidence 1 111 344555543222 233 25544 3343 456689998766555
No 334
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.14 E-value=61 Score=32.08 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=18.5
Q ss_pred CeEEeecCCCChHHHHHHHHHHhc
Q 020275 303 AKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 303 ~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
++|||||. .+|.++++|++.|+.
T Consensus 160 VNiig~~~-~~~~D~~eik~lL~~ 182 (417)
T cd01966 160 VNLLPGAH-LTPGDVEELKDIIEA 182 (417)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHH
Confidence 89999984 368899999888763
No 335
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=53.09 E-value=2e+02 Score=26.89 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHhc-cceeecC-CcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 52 QPHLVKRVHLEYLEAG-ADILVTS-SYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AG-AdiI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
+.+.+++.-+.++++| ++-|..+ |-+ -. ..++.+|-.++++.+++.+. .++-|.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstG-E~-----~~Lt~eEr~~~~~~~~~~~~------------------~~~pvi 74 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTG-EN-----FMLSTEEKKEIFRIAKDEAK------------------DQIALI 74 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccc-cc-----ccCCHHHHHHHHHHHHHHhC------------------CCCcEE
Confidence 3567777777788999 9977655 222 11 12455566666665555431 123344
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEec----CCCHHHHHHHHHHHHhcCCCccEE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFET----IPNKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET----~~~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
..+|.. +.++. .++++...+.|+|.+++=. -++.+|+..-.+.+.+...++|++
T Consensus 75 ~gv~~~------------------~t~~~----i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~ 132 (290)
T TIGR00683 75 AQVGSV------------------NLKEA----VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMI 132 (290)
T ss_pred EecCCC------------------CHHHH----HHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 444331 22222 4566667788999998732 124455444444443222258988
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC--hhhhHHHH
Q 020275 206 ICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP--PQFVENLI 252 (328)
Q Consensus 206 is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~--p~~~~~~l 252 (328)
+-=. ..++...-+.+ .+..+.+. +..+||-.++ +..+..++
T Consensus 133 lYn~---P~~tg~~l~~~-~i~~L~~~--pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 133 VYSI---PFLTGVNMGIE-QFGELYKN--PKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred EEeC---ccccccCcCHH-HHHHHhcC--CCEEEEEeCCCCHHHHHHHH
Confidence 5421 22222233433 34444443 4567777654 44444443
No 336
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.86 E-value=86 Score=29.36 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+|+...++.|+|+|.+..| ++++++.+++..+ + +.|+.+| .|.+++.+.+++. .++++|.+-+
T Consensus 200 eea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~-~i~leAs----------GGIt~~ni~~~a~--tGvD~Isvg~ 262 (277)
T PRK05742 200 DELRQALAAGADIVMLDEL-SLDDMREAVRLTA--G-RAKLEAS----------GGINESTLRVIAE--TGVDYISIGA 262 (277)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--C-CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEECh
Confidence 3445555677888888654 6667777766543 2 4555543 3555555555443 4667666665
No 337
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=52.81 E-value=2.1e+02 Score=27.08 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHcCCeEEeecCC----CChHHHHHHHHHHhc
Q 020275 287 GDGKFESFATRWRDSGAKLIGGCCR----TTPSTIQAVSKVLKE 326 (328)
Q Consensus 287 ~~~~~~~~~~~~~~~G~~iiGGCCG----t~P~hI~al~~~l~~ 326 (328)
++++..+.+++.++.|..|+.--|| |.+++|+++.++++.
T Consensus 292 t~eeI~~~v~~~l~~g~~Il~~gcgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 292 TPEKVKAEAKKCLEDGVDILAPGCGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CHHHHHHHHHHHHHcCCCEEcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6888999999999988777776666 568999999988764
No 338
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=52.80 E-value=2.4e+02 Score=28.80 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEec---CCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 160 DFHRRRLQVLVESGPDLLAFET---IPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET---~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
+.-.++++.+.+.|+|+|=+-. -|..++++.+++++++.. +.| ||+.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~p--ISID 214 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSP--VIAD 214 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCc--EEEe
Confidence 4457788888899999986653 355566888888887652 344 5663
No 339
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=52.49 E-value=2.2e+02 Score=27.21 Aligned_cols=225 Identities=19% Similarity=0.233 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhccceeecCCcCCChhhHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe--
Q 020275 54 HLVKRVHLEYLEAGADILVTSSYQATIPGFLSR-GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA-- 130 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG-- 130 (328)
|.+.+--++-++.|-..|.. |..-....++. |-..-.-.-++.++++..++... +..|..
T Consensus 61 d~l~~~~~~~~~lGi~av~L--Fgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p---------------~l~iitDv 123 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVIL--FGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFP---------------ELVVITDV 123 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCCcccccCcccccccCCCChHHHHHHHHHHhCC---------------CeEEEeee
Confidence 45556667778899887665 44433333222 21100113477777777665421 233333
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcC-CCccEEEEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEEN-IQIPSWICFS 209 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~-~~~pv~is~~ 209 (328)
|+-||-+.-++|--+.+.| +.-++-.+.+.+++-..+++|+|++.==-|-+ -.+.+|.+++.+.+ .+.|++ |-+
T Consensus 124 cLceyT~HGHcGil~~~~~---V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMD-GrV~aIR~aLd~ag~~~v~IM-sYs 198 (330)
T COG0113 124 CLCEYTDHGHCGILDDGGY---VDNDETLEILAKQAVSQAEAGADIVAPSDMMD-GRVGAIREALDEAGFIDVPIM-SYS 198 (330)
T ss_pred cccCCcCCCccccccCCCe---ecchHHHHHHHHHHHHHHHcCCCeeccccccc-chHHHHHHHHHHcCCCcceee-ehh
Confidence 4556654433332222222 34466677778888888899999998544444 24566777777654 245544 332
Q ss_pred ecC-------------------CCC--CCCCCCHHHHHHHHH--hcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEE
Q 020275 210 SVD-------------------GEN--APSGESFKECLDIIN--KSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVY 266 (328)
Q Consensus 210 ~~~-------------------~~~--l~~G~~~~~~~~~~~--~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~y 266 (328)
.+- +.+ .+|=-...+|++.+. -..+.+.+.|-=..| .+.+++.+++.++.|+.+|
T Consensus 199 aKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~--YLDIi~~vk~~~~lP~~AY 276 (330)
T COG0113 199 AKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALP--YLDIIRRVKEEFNLPVAAY 276 (330)
T ss_pred HHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCch--HHHHHHHHHHhcCCCeEEE
Confidence 110 000 122223445655442 124788888876654 4577788888889999999
Q ss_pred eCCCCc---cCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 267 PNSGEV---WDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 267 pN~g~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
--+|+- .-...+.|+.. ...+.+....+..+|+.+|
T Consensus 277 qVSGEYaMikAAa~nGwide----~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 277 QVSGEYAMIKAAAQNGWIDE----EKVVLESLTSIKRAGADLI 315 (330)
T ss_pred ecchHHHHHHHHHHcCCcch----HHHHHHHHHHHHhcCCCEE
Confidence 999962 11223457532 2246677777888888765
No 340
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=52.46 E-value=1.6e+02 Score=26.05 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=38.0
Q ss_pred ccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 202 IPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 202 ~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
.-++||......+-+.++..+.++++.+.+ .++.++-+|+ + ..++.+++..+.|++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~-~G~~~~~~~~--~----~~~~~i~~~~~iPil~ 65 (219)
T cd04729 9 GGLIVSCQALPGEPLHSPEIMAAMALAAVQ-GGAVGIRANG--V----EDIRAIRARVDLPIIG 65 (219)
T ss_pred CCeEEEccCCCCCCcCcHHHHHHHHHHHHH-CCCeEEEcCC--H----HHHHHHHHhCCCCEEE
Confidence 457888887788889999988888887765 3665544333 3 3444445445678763
No 341
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=52.06 E-value=32 Score=33.93 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=22.5
Q ss_pred HHHhccceeecCCcCCChhhHHhCCCCHHHH
Q 020275 63 YLEAGADILVTSSYQATIPGFLSRGLSIEEA 93 (328)
Q Consensus 63 yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~ 93 (328)
.+-++|||+..| |+ +..+++.|++.+.+
T Consensus 86 ~Lv~~ADVlien-fr--pG~l~rlGl~ye~L 113 (396)
T COG1804 86 RLVAGADVLIEN-FR--PGVLERLGLGYEAL 113 (396)
T ss_pred HHHhhCceehcc-cc--hhHHHHhCCCHHHH
Confidence 456889999999 76 77889999986544
No 342
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=51.69 E-value=1.2e+02 Score=28.35 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+|++..+++|+|+|++--| +++|++.+++.+. ....+.+..+ .|-+++.+-.+.. .+++.|-+--
T Consensus 198 le~~~eAl~agaDiImLDNm-~~e~~~~av~~l~---~~~~~~lEaS--------GgIt~~ni~~yA~--tGVD~IS~ga 263 (280)
T COG0157 198 LEEAEEALEAGADIIMLDNM-SPEELKEAVKLLG---LAGRALLEAS--------GGITLENIREYAE--TGVDVISVGA 263 (280)
T ss_pred HHHHHHHHHcCCCEEEecCC-CHHHHHHHHHHhc---cCCceEEEEe--------CCCCHHHHHHHhh--cCCCEEEeCc
Confidence 45666667799999999987 5688888888762 2346777664 5667776665543 4677665543
No 343
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=51.43 E-value=1.8e+02 Score=26.00 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=57.2
Q ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC--Chhh
Q 020275 170 VESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA--PPQF 247 (328)
Q Consensus 170 ~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~--~p~~ 247 (328)
...++|++=+|-.........+++.+++. +..+++|..-. .++++-..+.+.+..+.+ .+.+.+=+-+. ++..
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f--~~tp~~~~l~~~~~~~~~-~gaDivKia~~a~~~~D 163 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKKG--GTKIIMSYHDF--QKTPSWEEIVERLEKALS-YGADIVKIAVMANSKED 163 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHHC--CCEEEEeccCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEEeccCCHHH
Confidence 45779999999665555555566655544 48899999732 223333334445555543 45666666664 4656
Q ss_pred hHHHHHHHHh---hcCCeEEEEeCC
Q 020275 248 VENLICYFKE---LTKKAIVVYPNS 269 (328)
Q Consensus 248 ~~~~l~~l~~---~~~~pl~~ypN~ 269 (328)
...+++...+ ..+.|++++.-+
T Consensus 164 ~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 164 VLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 5566554332 335688887754
No 344
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=51.38 E-value=2e+02 Score=26.54 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCeEEEecCC---------------CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH---
Q 020275 165 RLQVLVESGPDLLAFETIP---------------NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL--- 226 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~--- 226 (328)
-++.+.+.|+|.+.+-+=. +++.++.+++.+++.+ ..+.++...-.++. -.+++.++
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~~~d~~---~~~~~~~~~~~ 157 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHG--REVIFDAEHFFDGY---KANPEYALATL 157 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--CeEEEeEEeccccC---CCCHHHHHHHH
Confidence 4666778899988764322 2234455667777765 55554322111111 12344333
Q ss_pred HHHHhcCCceEEEECC----CChhhhHHHHHHHHhhcC-CeEEEEeC
Q 020275 227 DIINKSGKVNAVGINC----APPQFVENLICYFKELTK-KAIVVYPN 268 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC----~~p~~~~~~l~~l~~~~~-~pl~~ypN 268 (328)
+.+.+ .++..|.+-= ..|..+..+++.+++..+ .+|.+...
T Consensus 158 ~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 203 (273)
T cd07941 158 KAAAE-AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAH 203 (273)
T ss_pred HHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEec
Confidence 43333 3555544332 249999999999988765 67766554
No 345
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.33 E-value=95 Score=29.17 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+|+...++.|+|+|++..| ++++++.+++.++.. +.+..+ .|-+++.+.++.. .+++.|-+-.
T Consensus 204 ee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~~-----~~leaS--------GgI~~~ni~~yA~--tGVD~Is~ga 266 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDGR-----AIVEAS--------GNVNLNTVGAIAS--TGVDVISVGA 266 (281)
T ss_pred HHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCCC-----eEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4556666789999999987 678888888876521 233443 5677777776654 4677776655
No 346
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=51.19 E-value=87 Score=30.14 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=44.4
Q ss_pred ceEEEeecCCcccCcCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 020275 125 RALVAASIGSYGAYLADGSEYSGNYGPG-VDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIP 203 (328)
Q Consensus 125 ~~~VaGsiGP~g~~l~~~~eY~g~y~~~-~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~p 203 (328)
.+-|.|=||=.+-+.. +.|.|..+ -+.+++.+ -.+++++|.++|++.|++|-+|+. -++.+.+.+ ++|
T Consensus 151 GIPV~gHiGLtPQs~~----~lGGykvqGr~~~~a~~-li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l-----~IP 219 (332)
T PLN02424 151 GIAVMGHVGLTPQAIS----VLGGFRPQGRTAESAVK-VVETALALQEAGCFAVVLECVPAP-VAAAITSAL-----QIP 219 (332)
T ss_pred CCCEEEeecccceeeh----hhcCccccCCCHHHHHH-HHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhC-----CCC
Confidence 4567777776543322 22334211 24454444 455889999999999999999987 444444432 477
Q ss_pred EEEEE
Q 020275 204 SWICF 208 (328)
Q Consensus 204 v~is~ 208 (328)
++ .+
T Consensus 220 tI-GI 223 (332)
T PLN02424 220 TI-GI 223 (332)
T ss_pred EE-ee
Confidence 66 44
No 347
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=51.16 E-value=2.8e+02 Score=28.18 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
=.||.+.++ .-..|+||+...- ...+ +..+.+++++-++...+-|+++.+.+. . .+-.+.
T Consensus 102 ltpe~~i~~---Q~~iGsDI~~~LD-~~t~-----~~~~~~~~~~sv~rT~rwa~~~~~~~~---------~-~~~~l~- 161 (487)
T PRK13533 102 VTNEEILEF---QRKIGSDIGVPLD-IPTP-----PDVDYEEAEEELEETLERLEEAAELIQ---------D-GDMLWV- 161 (487)
T ss_pred CCHHHHHHH---HHHhCCCEEeECC-ccCC-----CCCCHHHHHHHHHHHHHHHHHHHHhhh---------c-cCccEE-
Confidence 347777777 4467999998764 2221 123445666666667777777765431 0 111223
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCC------CHHHHHHHHHHHHh-cCCCcc
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIP------NKLEAQALVELLEE-ENIQIP 203 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~------~~~E~~a~~~~~~~-~~~~~p 203 (328)
||. .|. ...+++ ++-++.+.+.+.|.+.+-.+. ...++..++..+++ .+.++|
T Consensus 162 --giV----------QGg-----~~~dLR---~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkP 221 (487)
T PRK13533 162 --APV----------QGG-----TYPDLR---EESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAP 221 (487)
T ss_pred --EEe----------cCC-----CCHHHH---HHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCc
Confidence 332 121 113333 333556667789999887654 33566666666665 344677
Q ss_pred EEEE
Q 020275 204 SWIC 207 (328)
Q Consensus 204 v~is 207 (328)
.++.
T Consensus 222 ryL~ 225 (487)
T PRK13533 222 VHLF 225 (487)
T ss_pred eEEe
Confidence 6643
No 348
>PLN02321 2-isopropylmalate synthase
Probab=51.14 E-value=3.2e+02 Score=28.80 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcCCCc------cEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCc
Q 020275 163 RRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEENIQI------PSWICFSSVDGENAPSGESFKECLDIINKSGKV 235 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~~~~------pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 235 (328)
.+.++.|.+.|||.|=+-. +.+..|.+.+-++.+...... |+++.|.- .....++.+++.+.....+
T Consensus 111 l~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~r------a~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 111 LDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSR------CNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred HHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehh------ccHHhHHHHHHHhcCCCCC
Q ss_pred eEEEECCCChhh---------------hHHHHHHHHhhcCCeEEEEe-CCCCccCCccccccCCCCCChhHHHHHHHHHH
Q 020275 236 NAVGINCAPPQF---------------VENLICYFKELTKKAIVVYP-NSGEVWDGRAKKWLPSKCLGDGKFESFATRWR 299 (328)
Q Consensus 236 ~~iGvNC~~p~~---------------~~~~l~~l~~~~~~pl~~yp-N~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (328)
..--+..+++.+ +...++..+......+.+.| .++. .+++...+.++...
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r--------------td~d~l~~~~~~a~ 250 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR--------------SDPEFLYRILGEVI 250 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC--------------CCHHHHHHHHHHHH
Q ss_pred HcCCeEEeecCCC----ChHHHHHHHHHHhcC
Q 020275 300 DSGAKLIGGCCRT----TPSTIQAVSKVLKER 327 (328)
Q Consensus 300 ~~G~~iiGGCCGt----~P~hI~al~~~l~~~ 327 (328)
+.|+..|. .|-| +|.++..+-+.+...
T Consensus 251 ~aGa~~I~-L~DTvG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 251 KAGATTLN-IPDTVGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred HcCCCEEE-ecccccCCCHHHHHHHHHHHHHh
No 349
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=50.93 E-value=1.9e+02 Score=26.18 Aligned_cols=223 Identities=20% Similarity=0.189 Sum_probs=117.9
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
-.+++...++-+.+++.|.+.+-|.....+ | ..++++..+++-.+ ...++++|+
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-------g----~sE~~lg~~l~~~~---------------~~r~~~~i~ 66 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGN-------G----RSERILGRALRKSR---------------VPRDDIFIS 66 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGG-------G----THHHHHHHHHHHTS---------------STGGGSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccc-------c----cccccccccccccc---------------ccccccccc
Confidence 456788888999999999999999876411 1 13444444443311 123467888
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCC----HHHHHHHHHHHHhcCCCccEE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPN----KLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~----~~E~~a~~~~~~~~~~~~pv~ 205 (328)
.=+.+-+. .....+.+.+++...+.++.|--..+|++++--... ..|+-..++.+++.| +==.
T Consensus 67 tK~~~~~~-----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G--~ir~ 133 (283)
T PF00248_consen 67 TKVYGDGK-----------PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEG--KIRH 133 (283)
T ss_dssp EEEESSSS-----------TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTT--SEEE
T ss_pred cccccccc-----------ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccc--cccc
Confidence 77711111 111247788888888888888656789998764332 555666677777766 2222
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHH--HhcCCceEEEECCCC--hhhhHHHHHHHHhhcCCeEEEEeC-CCCccC-Ccc-c
Q 020275 206 ICFSSVDGENAPSGESFKECLDII--NKSGKVNAVGINCAP--PQFVENLICYFKELTKKAIVVYPN-SGEVWD-GRA-K 278 (328)
Q Consensus 206 is~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~~iGvNC~~--p~~~~~~l~~l~~~~~~pl~~ypN-~g~~~d-~~~-~ 278 (328)
+.++ +.+. +.+..+ .....+..+-++... ......+++...+. +..+++|-= ++.... ... .
T Consensus 134 iGvs---------~~~~-~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~-gi~v~a~~~l~~G~l~~~~~~~ 202 (283)
T PF00248_consen 134 IGVS---------NFSP-EQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREH-GIGVIAYSPLAGGLLTGKYKSP 202 (283)
T ss_dssp EEEE---------S--H-HHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHT-T-EEEEESTTGGGCGGTTTTTT
T ss_pred cccc---------cccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccccccccC
Confidence 3443 3332 344433 222355666666653 34555666665553 555555433 221111 000 0
Q ss_pred cccCCC-------CC----------ChhHHHHHHHHHHH---cCCeEEeecCCCChHHHHHHHHHH
Q 020275 279 KWLPSK-------CL----------GDGKFESFATRWRD---SGAKLIGGCCRTTPSTIQAVSKVL 324 (328)
Q Consensus 279 ~~~~~~-------~~----------~~~~~~~~~~~~~~---~G~~iiGGCCGt~P~hI~al~~~l 324 (328)
.+.... .. ..-..++.+.+|.- .+..+|-|| ++|+|+++..+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~--~~~~~l~en~~a~ 266 (283)
T PF00248_consen 203 PPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGA--SSPEHLEENLAAL 266 (283)
T ss_dssp TTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB---SSHHHHHHHHGGS
T ss_pred CCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCC--CCHHHHHHHHHHh
Confidence 000000 00 00134566777853 456666666 8999998876554
No 350
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=50.88 E-value=1.3e+02 Score=25.74 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCeEEEecCCC-HHHHHHHHHHHHhcCCCccEEEEEEe----cCCCCCCCCCCHHHHHHHHHh--------
Q 020275 165 RLQVLVESGPDLLAFETIPN-KLEAQALVELLEEENIQIPSWICFSS----VDGENAPSGESFKECLDIINK-------- 231 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~-~~E~~a~~~~~~~~~~~~pv~is~~~----~~~~~l~~G~~~~~~~~~~~~-------- 231 (328)
.++.|.++.==+|++----. ..-.+.+.+.++.. +.||+.++.- .+.+...+.-.+.++......
T Consensus 20 aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEkl--giPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g 97 (162)
T TIGR00315 20 VAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKF--DLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG 97 (162)
T ss_pred HHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHH--CCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence 34445555656676664332 22233444444444 5999988842 123333343444444443321
Q ss_pred ---cCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE----EeCCCCccCCccccccCCCCCChhHHHHHHHHHHH
Q 020275 232 ---SGKVNAVGINCAPPQFVENLICYFKELTKKAIVV----YPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD 300 (328)
Q Consensus 232 ---~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~----ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (328)
..=+..+|+||---+.+.+.|+... ++. -+.+ .||+...+ ++ ++.++|.++.++.++
T Consensus 98 ~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~-~i~l~~~y~pnA~~Sf--------~n--~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 98 EGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIV-TIAIDKYYQPNADYSF--------PN--LSKDEYLDYLRKLLA 161 (162)
T ss_pred CCCcCEEEEeCCcchHHHHHHHHHHhhc-CcE-EEEecCCCCCCCceec--------cc--cCHHHHHHHHHHHhc
Confidence 1234578999944455666666554 221 1211 45553211 22 456778888776543
No 351
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=50.79 E-value=62 Score=31.20 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 020275 87 GLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRL 166 (328)
Q Consensus 87 g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi 166 (328)
|++-....||++.+...|+.. ...+++| +|. +-+.+ .+..+.+++...|++|+
T Consensus 86 GLDW~~a~ELIrRs~aeA~~~----------------g~~ia~G-aGT--D~L~~--------~~~~sld~V~~AY~eQ~ 138 (382)
T PF06187_consen 86 GLDWAAARELIRRSAAEARAV----------------GARIACG-AGT--DQLDP--------APAASLDDVIAAYEEQL 138 (382)
T ss_dssp TB-HHHHHHHHHHHHHHHHTS----------------S--EEEE-E----TTS-----------TT--HHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhc----------------CCcEEee-cCc--CCCCC--------CCCCCHHHHHHHHHHHH
Confidence 555556788888888777632 1123444 332 11211 12358999999999999
Q ss_pred HHHHhcCCCeEEEecCCCHHHHHHH----------HHHHHhcCCCccEEEEEE
Q 020275 167 QVLVESGPDLLAFETIPNKLEAQAL----------VELLEEENIQIPSWICFS 209 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~~~~~E~~a~----------~~~~~~~~~~~pv~is~~ 209 (328)
+...+.|...|+ |-|-.=++++ -+++++. +.||++-.-
T Consensus 139 ~~ve~~Gg~~IL---MASRaLA~~A~~p~DY~~VY~~lL~q~--~~PVILHWL 186 (382)
T PF06187_consen 139 EAVEAAGGRVIL---MASRALAAVARSPDDYLRVYDRLLSQA--DEPVILHWL 186 (382)
T ss_dssp HHHHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH---SS-EEEEEE
T ss_pred HHHHHcCCeEEE---eehHHHHHhhCCHHHHHHHHHHHHHHc--CCCEEEEec
Confidence 999999999998 4444333322 1333333 589887654
No 352
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=50.71 E-value=13 Score=34.57 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++-...|-+.|..|.+||||||.|.
T Consensus 303 ~Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 303 FDLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEee
Confidence 4667789999999999999999985
No 353
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=50.62 E-value=2.4e+02 Score=27.26 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
+++-|+.+ +++|++.|...- .+|+..+ ...+.+.++.-+....+++.|++. +. .|..
T Consensus 73 ~~~di~~a----~~~g~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~---------------G~--~v~~ 130 (363)
T TIGR02090 73 LKKDIDKA----IDCGVDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH---------------GL--IVEF 130 (363)
T ss_pred CHHHHHHH----HHcCcCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---------------CC--EEEE
Confidence 44555443 578999876653 3444444 344666554444444555554431 22 3333
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE-ecCC--CHHHHHHHHHHHHhcCCCccEEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAF-ETIP--NKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~-ET~~--~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
++ .+. +. .+.+ ++.+.++.+.+.|+|.|.+ -|+. .+.++..+++.+++. .|+-+.
T Consensus 131 ~~-------eda----~r----~~~~----~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~---~~~~l~ 188 (363)
T TIGR02090 131 SA-------EDA----TR----TDID----FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN---VKLPIS 188 (363)
T ss_pred EE-------eec----CC----CCHH----HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc---cCceEE
Confidence 22 111 11 2333 4466667777889998755 4544 467888888888754 345567
Q ss_pred EEecCC
Q 020275 208 FSSVDG 213 (328)
Q Consensus 208 ~~~~~~ 213 (328)
|.+-++
T Consensus 189 ~H~Hnd 194 (363)
T TIGR02090 189 VHCHND 194 (363)
T ss_pred EEecCC
Confidence 776554
No 354
>PLN02334 ribulose-phosphate 3-epimerase
Probab=50.58 E-value=1.9e+02 Score=25.89 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCeEEEecCCC--HHHHH---HHHHHHHhcCCCccEEEEEEe
Q 020275 162 HRRRLQVLVESGPDLLAFETIPN--KLEAQ---ALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~--~~E~~---a~~~~~~~~~~~~pv~is~~~ 210 (328)
+.++++.+.++|+|+|-+--+-. ..... ..++.+++.. +.|+-+-+-+
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~-~~~~~vhlmv 74 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHT-DAPLDCHLMV 74 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcC-CCcEEEEecc
Confidence 46688999999999987643222 11111 3566666653 4554555555
No 355
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=50.53 E-value=3.5e+02 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhc
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEE 198 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~ 198 (328)
.+.+..|.+..||.|.+|+-.+-.| .++.+.+.
T Consensus 650 ~~i~~~i~~l~vD~~~lE~~rs~~e---~L~~~~~~ 682 (758)
T PRK05222 650 NDIIDAIAALDADVISIETSRSDME---LLDAFEDF 682 (758)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCch---hHHHhhcc
Confidence 4477778888999999997644323 34445443
No 356
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=50.40 E-value=2e+02 Score=26.83 Aligned_cols=144 Identities=15% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEE--ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAF--ETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
-+.++++++-.+.++.|.+.+++++++ .|.+ ..+++.+|+.- +.||+=.+ . .+..|++..+
T Consensus 47 ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTAS-----a~al~~LR~~~-~iPVvGvi-P----------aik~A~~~t~ 109 (269)
T COG0796 47 KSEEEIRERTLEIVDFLLERGIKALVIACNTAS-----AVALEDLREKF-DIPVVGVI-P----------AIKPAVALTR 109 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEecchHH-----HHHHHHHHHhC-CCCEEEec-c----------chHHHHHhcc
Confidence 488999999999999999999999755 3443 34567788754 68887332 1 1345555444
Q ss_pred hcCCceEEEECCC-ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCC-eEEee
Q 020275 231 KSGKVNAVGINCA-PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGA-KLIGG 308 (328)
Q Consensus 231 ~~~~~~~iGvNC~-~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~iiGG 308 (328)
. ..+..++-+++ .-.....+++++..........-|.-=.+.. ..+.. .....+...++...+...|+ .+|=|
T Consensus 110 ~-~~IgViaT~~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE---~g~~~-~~~~~~~l~~~l~~~~~~~~DtlVLG 184 (269)
T COG0796 110 N-GRIGVIATPATVKSNAYRDLIARFAPDCEVESLACPELVPLVE---EGIRG-GPVALEVLKEYLPPLQEAGPDTLVLG 184 (269)
T ss_pred C-CeEEEEeccchhccHHHHHHHHHhCCCCEEEEecCcchHHHHh---ccccc-CHHHHHHHHHHhcchhccCCCEEEEe
Confidence 3 45778999998 4567778888776543333333222111100 00111 11122234444455556565 45556
Q ss_pred cCCCChHHHHHH
Q 020275 309 CCRTTPSTIQAV 320 (328)
Q Consensus 309 CCGt~P~hI~al 320 (328)
| |.--+++.+
T Consensus 185 C--THyPll~~~ 194 (269)
T COG0796 185 C--THYPLLKPE 194 (269)
T ss_pred C--cCcHHHHHH
Confidence 7 555555543
No 357
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.34 E-value=2e+02 Score=26.11 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEEe
Q 020275 162 HRRRLQVLVESGPDLLAFE 180 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~E 180 (328)
..+.++.|.++|||+|-+.
T Consensus 16 ~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 16 TLEILKALVEAGADIIELG 34 (242)
T ss_pred HHHHHHHHHHCCCCEEEEC
Confidence 3667888999999999877
No 358
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.06 E-value=2.2e+02 Score=26.66 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCCHHHH---HHHHHHHHHHHHhcCCCeEEEecC--------CC-----------------HHHHHHHHHHHHhc-CCC
Q 020275 151 PGVDLEKL---KDFHRRRLQVLVESGPDLLAFETI--------PN-----------------KLEAQALVELLEEE-NIQ 201 (328)
Q Consensus 151 ~~~~~~e~---~~~h~~qi~~l~~~gvD~i~~ET~--------~~-----------------~~E~~a~~~~~~~~-~~~ 201 (328)
+.++.+|+ .+.|..-++.+.++|.|.|=+-.- -+ ..-+..+++++++. +.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34666555 455666666777899998744321 01 12234556666653 445
Q ss_pred ccEEEEEEecCCCCCCCCCCHHHHHHHHHh--cCCceEEEECCCC---h-----------hhhHHHHHHHHhhcCCeEEE
Q 020275 202 IPSWICFSSVDGENAPSGESFKECLDIINK--SGKVNAVGINCAP---P-----------QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 202 ~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGvNC~~---p-----------~~~~~~l~~l~~~~~~pl~~ 265 (328)
.|+.+-++..+ ...+|.++++++..++. ..+++.|-+.... + ......++.+++..+.|+++
T Consensus 209 ~~i~vris~~~--~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 286 (327)
T cd02803 209 FPVGVRLSADD--FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIA 286 (327)
T ss_pred ceEEEEechhc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEE
Confidence 78887776533 23456777776654432 2467777665532 1 22335667777777778765
No 359
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=49.71 E-value=46 Score=32.85 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
+..|+-...+ ++- -+.|||+++| |+ +..+++.|++.+.++++ ++-+|.
T Consensus 73 Lk~~~Gr~~l-~~L-i~~ADVvien-~r--pg~~~rlGl~~e~L~~~---------------------------nP~LIy 120 (405)
T PRK03525 73 IFKDEGREAF-LKL-METTDIFIEA-SK--GPAFARRGITDEVLWEH---------------------------NPKLVI 120 (405)
T ss_pred CCCHHHHHHH-HHH-HHhCCEEEEC-CC--ccHHHHcCCCHHHHHHh---------------------------CCCeEE
Confidence 3455543333 222 3559999998 66 56788889987655431 456888
Q ss_pred eecCCcccC
Q 020275 130 ASIGSYGAY 138 (328)
Q Consensus 130 GsiGP~g~~ 138 (328)
.|+..||..
T Consensus 121 ~sisgfG~~ 129 (405)
T PRK03525 121 AHLSGFGQY 129 (405)
T ss_pred EEeeECCCC
Confidence 888888753
No 360
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.64 E-value=1.2e+02 Score=27.74 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=77.1
Q ss_pred cCCCeEE--EecCCCHHH--HHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHH---------HHHHHHHhcCCceEE
Q 020275 172 SGPDLLA--FETIPNKLE--AQALVELLEEENIQIPSWICFSSVDGENAPSGESFK---------ECLDIINKSGKVNAV 238 (328)
Q Consensus 172 ~gvD~i~--~ET~~~~~E--~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---------~~~~~~~~~~~~~~i 238 (328)
.-+|++= +-|..-..+ ++..++.+++++ +++. + .|+.++ +.++.+++ .+..+|
T Consensus 23 ~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~--V~v~--~---------GGtl~E~~~~q~~~~~Yl~~~k~-lGf~~I 88 (237)
T TIGR03849 23 DYITFVKFGWGTSALIDRDIVKEKIEMYKDYG--IKVY--P---------GGTLFEIAHSKGKFDEYLNECDE-LGFEAV 88 (237)
T ss_pred hheeeEEecCceEeeccHHHHHHHHHHHHHcC--CeEe--C---------CccHHHHHHHhhhHHHHHHHHHH-cCCCEE
Confidence 3478753 345544444 788888888775 5554 2 233333 33444444 467777
Q ss_pred EECCCC---h-hhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEE---e----
Q 020275 239 GINCAP---P-QFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI---G---- 307 (328)
Q Consensus 239 GvNC~~---p-~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii---G---- 307 (328)
=|+=.. | +....+++.+++ .-+.+.|--|.... .....+++++|.+.+++++++||..| +
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~---~g~~v~~EvG~K~~------~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg 159 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKD---NGFMVLSEVGKKSP------EKDSELTPDDRIKLINKDLEAGADYVIIEGRESG 159 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHh---CCCeEeccccccCC------cccccCCHHHHHHHHHHHHHCCCcEEEEeehhcC
Confidence 777752 3 455566666654 44556666664211 11123578999999999999998443 2
Q ss_pred ---ecCC----CChHHHHHHHHHH
Q 020275 308 ---GCCR----TTPSTIQAVSKVL 324 (328)
Q Consensus 308 ---GCCG----t~P~hI~al~~~l 324 (328)
|+|. ...+-+..|.+.+
T Consensus 160 ~~~Gi~~~~g~~r~d~v~~i~~~l 183 (237)
T TIGR03849 160 KNIGLFDEKGNVKEDELDVLAENV 183 (237)
T ss_pred CCcceeCCCCCCchHHHHHHHhhC
Confidence 6675 3455566655543
No 361
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=49.55 E-value=2.3e+02 Score=29.05 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.+..+...+.++|++=+|.... .++...++.++.. +..+++|+. +-..+++-+.+.+.+..+.+ .+++.+=+-+
T Consensus 100 ~~ll~~~~~~~~d~iDiEl~~~-~~~~~~~~~~~~~--~~~vI~S~H--~f~~tP~~~el~~~~~~~~~-~gaDi~Kia~ 173 (529)
T PLN02520 100 QDALRLAMELGADYVDVELKVA-HEFINSISGKKPE--KCKVIVSSH--NYENTPSVEELGNLVARIQA-TGADIVKIAT 173 (529)
T ss_pred HHHHHHHHHhCCCEEEEEcCCc-hhHHHHHHhhhhc--CCEEEEEec--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEec
Confidence 3344555567899999996443 3555555556544 478999986 11233332223334444433 3567777777
Q ss_pred C--ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 243 A--PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 243 ~--~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
. ++..+..+++.... .+.|++.+.-
T Consensus 174 ~~~~~~D~~~ll~~~~~-~~~p~i~~~M 200 (529)
T PLN02520 174 TALDITDVARMFQITVH-SQVPTIGLVM 200 (529)
T ss_pred CCCCHHHHHHHHHHHhh-cCCCEEEEec
Confidence 5 35566666654333 3678776554
No 362
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.49 E-value=1.9e+02 Score=25.63 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCeEEEecCCCH-----HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275 165 RLQVLVESGPDLLAFETIPNK-----LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG 239 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~-----~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG 239 (328)
.++.+.+.|+|.+.+=++.-. .....+.+..++. +.|++++=-+ .+++++-..+. .+++.+-
T Consensus 35 ~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GGI---------~~~ed~~~~~~--~Ga~~vi 101 (233)
T PRK00748 35 QAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGGI---------RSLETVEALLD--AGVSRVI 101 (233)
T ss_pred HHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCCc---------CCHHHHHHHHH--cCCCEEE
Confidence 455555679999887765432 2233344444433 5888863211 35666665554 3677888
Q ss_pred ECCC---ChhhhHHHHHHH
Q 020275 240 INCA---PPQFVENLICYF 255 (328)
Q Consensus 240 vNC~---~p~~~~~~l~~l 255 (328)
++.. .|+.+..+.+.+
T Consensus 102 lg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKF 120 (233)
T ss_pred ECchHHhCHHHHHHHHHHh
Confidence 8886 355555555554
No 363
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=49.43 E-value=1.1e+02 Score=27.40 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=45.3
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHH---HHHhcCCceEEEECCC
Q 020275 178 AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLD---IINKSGKVNAVGINCA 243 (328)
Q Consensus 178 ~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~iGvNC~ 243 (328)
+..|+.|...++.+-+++++.+..++|||.+.+.. +.-+.|.+..++.+ .+...+++...|+-|.
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH 162 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAI 162 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 44889999999988888877665578888887643 33356877655444 3343456777888875
No 364
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=49.37 E-value=2.2e+02 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHhccceeecCCcCCCh
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTSSYQATI 80 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~ 80 (328)
..+|+.+++. .-.+|++|++.+.-+.+.
T Consensus 19 y~s~~~~~~a---i~aSg~~ivTva~rR~~~ 46 (248)
T cd04728 19 YPSPAIMKEA---IEASGAEIVTVALRRVNI 46 (248)
T ss_pred CCCHHHHHHH---HHHhCCCEEEEEEEeccc
Confidence 3567777665 557999999988877653
No 365
>PTZ00344 pyridoxal kinase; Provisional
Probab=49.09 E-value=1.2e+02 Score=28.15 Aligned_cols=78 Identities=10% Similarity=-0.085 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCC---ccEEEEEEecCCCCCCCCCCHHHHHH
Q 020275 151 PGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQ---IPSWICFSSVDGENAPSGESFKECLD 227 (328)
Q Consensus 151 ~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~---~pv~is~~~~~~~~l~~G~~~~~~~~ 227 (328)
+.++.+++.+..+...+......+|.+..-.+|+.+-+..+.+.+++.... .++++=-...+++++-.+..+.+++.
T Consensus 55 ~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~ 134 (296)
T PTZ00344 55 HRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYR 134 (296)
T ss_pred eeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHH
Confidence 346666654443322221123467999999999988888888888643211 23443322334555555666655555
Q ss_pred H
Q 020275 228 I 228 (328)
Q Consensus 228 ~ 228 (328)
.
T Consensus 135 ~ 135 (296)
T PTZ00344 135 E 135 (296)
T ss_pred H
Confidence 3
No 366
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=48.98 E-value=25 Score=28.46 Aligned_cols=44 Identities=27% Similarity=0.233 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHh
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEE 197 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~ 197 (328)
+.+++.......++.|-+.|+|.|++|.+|...+..++.+-+++
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 66777777777889998889999999999988888888766554
No 367
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=48.79 E-value=3.3e+02 Score=29.33 Aligned_cols=135 Identities=22% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-----EEecCCCHHHHHHHHHHHHhcCC---CccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 155 LEKLKDFHRRRLQVLVESGPDLL-----AFETIPNKLEAQALVELLEEENI---QIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 155 ~~e~~~~h~~qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
.+++...|.+.++.|.+.||+.| ++=+-+...+..++.++.+.... +.++++...+. ++.+..
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Q ss_pred HHHHhcCCceEEEECCCC-hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeE
Q 020275 227 DIINKSGKVNAVGINCAP-PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKL 305 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~~-p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 305 (328)
..+.+ .+++++++-+++ ++.+..+...+......-+++ .|++.. |... .++..+.+++..+.+-++
T Consensus 244 ~~l~~-lpvd~l~lD~v~~~~~L~~~~~~~~~~k~L~~GV-------IDgrni-w~~d----~~~~~~~l~~~~~~~~~l 310 (750)
T TIGR01371 244 EALVS-LPVKGIGLDFVHGKGTLELVKAGFPEDKVLSAGV-------IDGRNI-WRND----LEASLSLLKKLLAHVGKL 310 (750)
T ss_pred HHHHc-CCCCEEEEEeccCcccHHHHHhcCCCCCeEEEEE-------Eecccc-ccCC----HHHHHHHHHHHHhhCCCE
Q ss_pred -EeecCC
Q 020275 306 -IGGCCR 311 (328)
Q Consensus 306 -iGGCCG 311 (328)
|+=-||
T Consensus 311 ~v~psCs 317 (750)
T TIGR01371 311 VVSTSCS 317 (750)
T ss_pred EEeCCCC
No 368
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.79 E-value=82 Score=29.24 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
++...++.|+|+|.+..|+ .++++.+++.+++. .++|+.++ .|-+++.+...+. .++++|.+
T Consensus 193 ea~~A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~-~~i~i~as----------GGIt~~ni~~~a~--~Gad~Isv 254 (269)
T cd01568 193 EAEEALEAGADIIMLDNMS-PEELKEAVKLLKGL-PRVLLEAS----------GGITLENIRAYAE--TGVDVIST 254 (269)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhccC-CCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEE
Confidence 3344445789999998874 47777777766543 24554433 3566776666554 36677665
No 369
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=48.58 E-value=1.9e+02 Score=26.18 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCC-----CCCCCCCCHHHHHHHHHhcCCc
Q 020275 163 RRRLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSWICFSSVDG-----ENAPSGESFKECLDIINKSGKV 235 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~-----~~l~~G~~~~~~~~~~~~~~~~ 235 (328)
.++++.+.+.|+|-+.+-| +.+++-++.+++.+ + -.+.+|+.+... +-..+..++.+.+..+.+ .++
T Consensus 87 ~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~--~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~-~G~ 160 (241)
T PRK14024 87 DESLEAALATGCARVNIGTAALENPEWCARVIAEH---G--DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS-AGC 160 (241)
T ss_pred HHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---h--hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh-cCC
Confidence 4567777789999887765 45665555555544 3 226666665432 111233456677776655 456
Q ss_pred eEEEECCCChh-----hhHHHHHHHHhhcCCeEEEEeCCC
Q 020275 236 NAVGINCAPPQ-----FVENLICYFKELTKKAIVVYPNSG 270 (328)
Q Consensus 236 ~~iGvNC~~p~-----~~~~~l~~l~~~~~~pl~~ypN~g 270 (328)
..+-++....+ .=..+++++.+..+.|+++ |+|
T Consensus 161 ~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvia--sGG 198 (241)
T PRK14024 161 SRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVA--SGG 198 (241)
T ss_pred CEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEE--eCC
Confidence 66555553211 1246667777777778655 554
No 370
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.43 E-value=62 Score=31.96 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhc--CCceEEEECCCC---hhhhHHHHHHHHhh----cCCeEEEEeCCCCccCCccccccCCCCCChhH
Q 020275 220 ESFKECLDIINKS--GKVNAVGINCAP---PQFVENLICYFKEL----TKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGK 290 (328)
Q Consensus 220 ~~~~~~~~~~~~~--~~~~~iGvNC~~---p~~~~~~l~~l~~~----~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~ 290 (328)
..+.+++..+.+. +.+.+|--.|++ -+.+..+++++++. .+.|++.....|-. + ..| .+ -...
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~--g--~~~-~G---~~~a 138 (428)
T cd01965 67 DNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK--G--SHE-TG---YDNA 138 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC--C--cHH-HH---HHHH
Confidence 4556666655432 344556666754 36777777777652 45666665554311 1 001 00 0011
Q ss_pred HHHHHHHHHH-------cCCeEEeecCCCChHHHHHHHHHHh
Q 020275 291 FESFATRWRD-------SGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 291 ~~~~~~~~~~-------~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
+...++++.. ..++||||+.-+.+ ++++|++.|+
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~-d~~el~~lL~ 179 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPG-DVREIKRILE 179 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCcc-CHHHHHHHHH
Confidence 2223333322 23788998876543 5666666554
No 371
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=48.39 E-value=1.7e+02 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=33.4
Q ss_pred ceEEEeecCCcccCcCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCH
Q 020275 125 RALVAASIGSYGAYLADGSEYSGNYG-PGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNK 185 (328)
Q Consensus 125 ~~~VaGsiGP~g~~l~~~~eY~g~y~-~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~~ 185 (328)
.+-|.|=||=++-.... .|.|. ..-+.++..+.++ .++.|.++|+=.+++|-+|.-
T Consensus 131 GIPV~gHiGLtPQ~~~~----~GGyr~qGk~~~~a~~l~~-~A~ale~AGaf~ivlE~vp~~ 187 (261)
T PF02548_consen 131 GIPVMGHIGLTPQSVHQ----LGGYRVQGKTAEEAEKLLE-DAKALEEAGAFAIVLECVPAE 187 (261)
T ss_dssp T--EEEEEES-GGGHHH----HTSS--CSTSHHHHHHHHH-HHHHHHHHT-SEEEEESBBHH
T ss_pred CCcEEEEecCchhheec----cCCceEEecCHHHHHHHHH-HHHHHHHcCccEEeeecCHHH
Confidence 46688888765543221 12232 1236666655554 788999999999999999863
No 372
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=48.38 E-value=15 Score=34.85 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++..+.|.+.+..+-+||||+|.|.
T Consensus 286 ~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 286 LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 5777899999999999999999985
No 373
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=48.25 E-value=2.2e+02 Score=26.12 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=68.2
Q ss_pred HHHHHHhcCCCeEE-EecCCC------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCH---HHHHHHHHhcCC
Q 020275 165 RLQVLVESGPDLLA-FETIPN------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESF---KECLDIINKSGK 234 (328)
Q Consensus 165 qi~~l~~~gvD~i~-~ET~~~------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~---~~~~~~~~~~~~ 234 (328)
.++..++.|+|.+- ..-+.+ ..+++.+++++++. +.|+++-.. .+..++.++.+. ..+++...+ .+
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~--g~pl~vi~~-~~g~~~e~~~~~~~i~~a~~~a~e-~G 173 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEW--GMPLLAMMY-PRGPGIKNEYDPEVVAHAARVAAE-LG 173 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHc--CCcEEEEEe-cCCCccCCCccHHHHHHHHHHHHH-HC
Confidence 46667788988543 222222 33555566666655 488877432 223333333332 233443333 47
Q ss_pred ceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCC
Q 020275 235 VNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTT 313 (328)
Q Consensus 235 ~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~ 313 (328)
++.|=.+=.. -...++++....+.|+.+ -+|... -+.+++.+.+.+.++.|+. |=|+|..
T Consensus 174 AD~vKt~~~~---~~~~l~~~~~~~~ipV~a--~GGi~~------------~~~~~~l~~v~~~~~aGA~--Gis~gr~ 233 (267)
T PRK07226 174 ADIVKTNYTG---DPESFREVVEGCPVPVVI--AGGPKT------------DTDREFLEMVRDAMEAGAA--GVAVGRN 233 (267)
T ss_pred CCEEeeCCCC---CHHHHHHHHHhCCCCEEE--EeCCCC------------CCHHHHHHHHHHHHHcCCc--EEehhhh
Confidence 7877665211 124455544444567533 334210 1355688888888999998 7788765
No 374
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=48.21 E-value=2.7e+02 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCC--eEEEecCCCHHHHH
Q 020275 164 RRLQVLVESGPD--LLAFETIPNKLEAQ 189 (328)
Q Consensus 164 ~qi~~l~~~gvD--~i~~ET~~~~~E~~ 189 (328)
..++.+.+.|+| +++++. .++.|++
T Consensus 281 ~~l~~l~~~g~~~v~~~~~~-~dl~~ak 307 (378)
T cd03308 281 RYLEYLQELPKGKTVGLFEY-GDPKKVK 307 (378)
T ss_pred HHHHHHHhcCCCcEEEcCCC-CCHHHHH
Confidence 356777788888 677776 5776643
No 375
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=48.01 E-value=2.4e+02 Score=27.75 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh--hhHHHHHH
Q 020275 183 PNKLEAQALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ--FVENLICY 254 (328)
Q Consensus 183 ~~~~E~~a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~--~~~~~l~~ 254 (328)
-|...+..+++-+.+. +++++--+-+.+ |+..-+..-+++++ . -|-+||+.|. +-.++++.
T Consensus 41 Rn~~KL~~vL~~~~~k~~~~ls~~~i~i~-------D~~n~~Sl~emak~-~---~vivN~vGPyR~hGE~VVka 104 (423)
T KOG2733|consen 41 RNEKKLQEVLEKVGEKTGTDLSSSVILIA-------DSANEASLDEMAKQ-A---RVIVNCVGPYRFHGEPVVKA 104 (423)
T ss_pred CCHHHHHHHHHHHhhccCCCcccceEEEe-------cCCCHHHHHHHHhh-h---EEEEeccccceecCcHHHHH
Confidence 4666777777766653 334443332323 33333333333333 2 3569999884 34444444
No 376
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=48.00 E-value=2.5e+02 Score=26.54 Aligned_cols=142 Identities=10% Similarity=-0.036 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEe-c----CCCH---HHHH----HHHHHHHhcCCCccEEEEEEecCC--CCCCCCCC
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLAFE-T----IPNK---LEAQ----ALVELLEEENIQIPSWICFSSVDG--ENAPSGES 221 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~~E-T----~~~~---~E~~----a~~~~~~~~~~~~pv~is~~~~~~--~~l~~G~~ 221 (328)
+++...+++.++.|.++|+++|-+. . +.+. .++. .+.+++...+.+.++.+-++..+. .+..+| +
T Consensus 151 ~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~-~ 229 (332)
T cd03311 151 MDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG-G 229 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-c
Confidence 6777888999999999999977443 2 2221 1222 233444332323455544432221 123333 4
Q ss_pred HHHHHHHHHhcCCceEEEECCCCh-hhhHHHHHHHHhhcCCeE--EEEeCCCCccCCccccccCCCCCChhHHHHHHHHH
Q 020275 222 FKECLDIINKSGKVNAVGINCAPP-QFVENLICYFKELTKKAI--VVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRW 298 (328)
Q Consensus 222 ~~~~~~~~~~~~~~~~iGvNC~~p-~~~~~~l~~l~~~~~~pl--~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
....+..+.+. +++++++-...+ ..-...++.+.. ++.+ ++.+. . ..|++ ++++..+.+++.
T Consensus 230 y~~i~~~l~~~-~vd~~~le~~~~~~~~~~~l~~~~~--~k~l~~GvVd~-------~-~~~~e----~~e~v~~ri~~~ 294 (332)
T cd03311 230 YEPIAEYIFEL-DVDVFFLEYDNSRAGGLEPLKELPY--DKKVGLGVVDV-------K-SPEVE----SPEEVKDRIEEA 294 (332)
T ss_pred HHHHHHHHHhC-CCCEEEEEEcCCCCcchHHHHhCCC--CCEEEeeeecC-------C-CCCCC----CHHHHHHHHHHH
Confidence 45666766553 588999988753 222223333221 2322 23221 1 11332 588888888888
Q ss_pred HHcCC---eEEeecCCCC
Q 020275 299 RDSGA---KLIGGCCRTT 313 (328)
Q Consensus 299 ~~~G~---~iiGGCCGt~ 313 (328)
.+... -+++=-||..
T Consensus 295 ~~~~~~~~l~lsp~CGl~ 312 (332)
T cd03311 295 AKYVPLEQLWVSPDCGFA 312 (332)
T ss_pred HhhCCHHHEEECCCCCCC
Confidence 77554 2788889874
No 377
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.96 E-value=91 Score=28.95 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
+++....+.|+|+|.+..|+ +++++.+++.++. ++|+.++ .|-+++.+..++. .++++|-+-.
T Consensus 193 eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~Ai----------GGI~~~ni~~~a~--~Gvd~Iav~s 255 (268)
T cd01572 193 EQLKEALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEAS----------GGITLENIRAYAE--TGVDYISVGA 255 (268)
T ss_pred HHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEEEe
Confidence 34444556888999888885 6777777765532 3665543 3666666666554 3556555433
No 378
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=47.93 E-value=16 Score=34.77 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++..+.+.+.+..+-+||||+|.|.
T Consensus 287 iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 287 FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 5777899999999999999999985
No 379
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.81 E-value=32 Score=28.33 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHcCCeEEeecC--CCChHHHHHHHHHHhc
Q 020275 287 GDGKFESFATRWRDSGAKLIGGCC--RTTPSTIQAVSKVLKE 326 (328)
Q Consensus 287 ~~~~~~~~~~~~~~~G~~iiGGCC--Gt~P~hI~al~~~l~~ 326 (328)
+++++++ .+.+.++.+||-|. +++.+.++++.+.|+.
T Consensus 41 s~e~~v~---aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 41 TPEEIAR---QAVEADVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred CHHHHHH---HHHHcCCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 4555444 45677999999877 5677777777777764
No 380
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.77 E-value=2.3e+02 Score=26.18 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeec
Q 020275 53 PHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASI 132 (328)
Q Consensus 53 Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsi 132 (328)
.+.+++.-+.++++|++-|..+--..-. .-++.+|-.++.+.+++.+. ++-..|+| +
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~-----~~Ls~~Er~~~~~~~~~~~~-----------------~~~~vi~g-v 74 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGES-----PTLSHEEHKKVIEFVVDLVN-----------------GRVPVIAG-T 74 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCccc-----ccCCHHHHHHHHHHHHHHhC-----------------CCCeEEEe-C
Confidence 4567777777789999977765222111 13455666666655555431 22234455 4
Q ss_pred CCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecC----CCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 133 GSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETI----PNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 133 GP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~----~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
|.. +.++. .++++...+.|+|.+++=.= ++.+++..-.+.+.+.. ++|+++-=
T Consensus 75 ~~~------------------s~~~~----i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~-~~pi~lYn 131 (285)
T TIGR00674 75 GSN------------------ATEEA----ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV-DLPIILYN 131 (285)
T ss_pred CCc------------------cHHHH----HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 331 22222 45777778899998876421 35556555555554443 68987543
Q ss_pred EecCCCCCCCCCCHHHHHHHHHhcCCceEEEE-CCC-ChhhhHHHH
Q 020275 209 SSVDGENAPSGESFKECLDIINKSGKVNAVGI-NCA-PPQFVENLI 252 (328)
Q Consensus 209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv-NC~-~p~~~~~~l 252 (328)
.. ..+-..-+.+ .+..+.+.+ ..+|+ +++ ....+..++
T Consensus 132 ~P---~~tg~~l~~~-~l~~L~~~~--~v~giK~s~~d~~~~~~l~ 171 (285)
T TIGR00674 132 VP---SRTGVSLYPE-TVKRLAEEP--NIVAIKEATGNLERISEIK 171 (285)
T ss_pred Cc---HHhcCCCCHH-HHHHHHcCC--CEEEEEeCCCCHHHHHHHH
Confidence 21 1221223443 333443433 36677 344 344444443
No 381
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=47.74 E-value=16 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++....|.+.+..|-+||||+|.|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 5777899999999999999999985
No 382
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.66 E-value=1.1e+02 Score=29.13 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhcC--CeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 248 VENLICYFKELTK--KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 248 ~~~~l~~l~~~~~--~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
+...++.+++... .+|++.-|..+ +.. ...++++..++++.+.+.|+.+|
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~~~--------~~~-~g~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNSAD--------FQR-GGFTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcHHH--------cCC-CCCCHHHHHHHHHHHHHcCCCEE
Confidence 4456677776653 58888887522 111 11357788899999999997554
No 383
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=47.65 E-value=16 Score=34.71 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++..+.|.+.+..|-+||||+|.|.
T Consensus 290 ~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 290 LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 6778899999999999999999985
No 384
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=47.59 E-value=1.7e+02 Score=27.09 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHH-hhcCCeE--EEEeCCCCccCC-----ccc-----cc-c
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFK-ELTKKAI--VVYPNSGEVWDG-----RAK-----KW-L 281 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~-~~~~~pl--~~ypN~g~~~d~-----~~~-----~~-~ 281 (328)
..||..+.++-....+ |++..+.+..++++++ +..+.|+ +.|-|--..|.- ..+ .. +
T Consensus 51 ~ADGpvIq~A~~rAL~---------~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi 121 (259)
T PF00290_consen 51 VADGPVIQKASQRALK---------NGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII 121 (259)
T ss_dssp TTSSHHHHHHHHHHHH---------TT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE
T ss_pred CCCCHHHHHHHHHHHH---------CCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE
Confidence 4588888877654433 2344777888888888 6566664 667663111100 000 00 1
Q ss_pred CCCCCChhHHHHHHHHHHHcCCeEEeecCC-CChHHHHHHHHH
Q 020275 282 PSKCLGDGKFESFATRWRDSGAKLIGGCCR-TTPSTIQAVSKV 323 (328)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG-t~P~hI~al~~~ 323 (328)
+ ++..++..++.....+.|..+|-=+-- |+++.|+.|++.
T Consensus 122 p--DLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 122 P--DLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp T--TSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH
T ss_pred c--CCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh
Confidence 2 245666777777777889888887777 566777887765
No 385
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=47.43 E-value=2.4e+02 Score=26.32 Aligned_cols=142 Identities=12% Similarity=0.104 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+.+.+++.-+.+++.|++-|..+--..-.. -++.+|-.++++.+++.+. ++-..|+|.
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-----~Ls~~Er~~l~~~~~~~~~-----------------g~~pvi~gv 76 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPG-----SLTLEERKQAIENAIDQIA-----------------GRIPFAPGT 76 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHHHhC-----------------CCCcEEEEC
Confidence 356788888888899999777654333222 3455666677666655431 222344543
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecC----CCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETI----PNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~----~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
-+. +.++. .++++...+.|+|.+++-+= ++.+++..-.+.+.+...++|+++-
T Consensus 77 ~~~-------------------~t~~a----i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 77 GAL-------------------NHDET----LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred Ccc-------------------hHHHH----HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 322 22222 34566667789999987642 3445555444444433116898865
Q ss_pred EEecCCCCCCCCCCHHHHHHHHH-hcCCceEEEECCCC
Q 020275 208 FSSVDGENAPSGESFKECLDIIN-KSGKVNAVGINCAP 244 (328)
Q Consensus 208 ~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~iGvNC~~ 244 (328)
=.. .++..-.+.+ .+..+. +.++ .+|+--++
T Consensus 134 n~P---~~tg~~l~~~-~l~~L~~~~pn--v~giK~ss 165 (294)
T TIGR02313 134 NIP---GRAAQEIAPK-TMARLRKDCPN--IVGAKESN 165 (294)
T ss_pred eCc---hhcCcCCCHH-HHHHHHhhCCC--EEEEEeCC
Confidence 321 1211223333 444443 3344 56666554
No 386
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=47.15 E-value=2.7e+02 Score=26.71 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCceEEEECCCC---------h-----------------hhhHHHHHHHHhhcCC-eEEEEeCCCCccC
Q 020275 222 FKECLDIINKSGKVNAVGINCAP---------P-----------------QFVENLICYFKELTKK-AIVVYPNSGEVWD 274 (328)
Q Consensus 222 ~~~~~~~~~~~~~~~~iGvNC~~---------p-----------------~~~~~~l~~l~~~~~~-pl~~ypN~g~~~d 274 (328)
+.+++..+.+ .+.++|-|||.+ | ..+..+++.+++..+. ++++.-|..+...
T Consensus 154 f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 154 FRQAARNAIE-AGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHH-cCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC--------CChHHHHHHHHHHh
Q 020275 275 GRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR--------TTPSTIQAVSKVLK 325 (328)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG--------t~P~hI~al~~~l~ 325 (328)
...... +.+++.++++.+.+.|+.+|==-+| ...+..++|++.++
T Consensus 233 ~~~~~~------~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ 285 (338)
T cd02933 233 DMGDSD------PEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK 285 (338)
T ss_pred CCCCCC------CHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC
No 387
>PRK10481 hypothetical protein; Provisional
Probab=47.12 E-value=2.2e+02 Score=25.77 Aligned_cols=91 Identities=10% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCCC-----------CHHHHHHHHHhcCCceEEEECCCC--------------hhhhHHHHHHHHhhcCCeEEEEeCC
Q 020275 215 NAPSGE-----------SFKECLDIINKSGKVNAVGINCAP--------------PQFVENLICYFKELTKKAIVVYPNS 269 (328)
Q Consensus 215 ~l~~G~-----------~~~~~~~~~~~~~~~~~iGvNC~~--------------p~~~~~~l~~l~~~~~~pl~~ypN~ 269 (328)
+|+||+ -+.+++..+++ .+.++|.+-|++ |..+..-+-..-...++.-++-|-
T Consensus 61 rL~dG~~v~~s~~~v~~~lq~~i~~l~~-~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~- 138 (224)
T PRK10481 61 RLNDGQQVHVSKQKVERDLQSVIEVLDN-QGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPV- 138 (224)
T ss_pred EecCCCEEEEEHHHHHHHHHHHHHHHHh-CCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeC-
Q ss_pred CCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCC---CChHHHHHHHHHHh
Q 020275 270 GEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCR---TTPSTIQAVSKVLK 325 (328)
Q Consensus 270 g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCG---t~P~hI~al~~~l~ 325 (328)
++...+..++|.+.|....-+|.. .+++.+.+.++.+.
T Consensus 139 ------------------~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~ 179 (224)
T PRK10481 139 ------------------EEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELL 179 (224)
T ss_pred ------------------HHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhh
No 388
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=47.07 E-value=1.5e+02 Score=27.28 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 164 RRLQVLVESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
.|+......|+|++++- +.-+..+++.+++.++..+ +-+++-+. +.+++-... + .+++.||+|=
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh-----------~~~E~~~A~-~-~gadiIgin~ 188 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVH-----------DEEELERAL-K-LGAPLIGINN 188 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeC-----------CHHHHHHHH-H-cCCCEEEECC
Confidence 38888889999998776 4546678899999998775 66665552 234554433 3 3788999995
No 389
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.93 E-value=1.9e+02 Score=24.92 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEE-----ecCCCHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 020275 162 HRRRLQVLVESGPDLLAF-----ETIPNKLEAQALVELLEEENIQIPSWICFSSVD 212 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~-----ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~ 212 (328)
+.+.++.+.++|+|.|-+ .+.++...-..+++.+++.. +.|+-+-+.+.+
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~~~d 68 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVEN 68 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CCcEEEEeeeCC
Confidence 466889999999999987 33343321112334444332 366655565553
No 390
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.81 E-value=2.7e+02 Score=26.69 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCeEEEecC-CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH---HHHHhcCCceEEEE
Q 020275 165 RLQVLVESGPDLLAFETI-PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL---DIINKSGKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~~iGv 240 (328)
.++...+.|+|.|-+-|- ...+.++..++.+|+.+ ..+.+++.. . +..+.+..+ +.+.+ .++..|.+
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G--~~v~~~l~~--s----~~~~~e~l~~~a~~~~~-~Ga~~i~i 162 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARELG--MDTVGFLMM--S----HMTPPEKLAEQAKLMES-YGADCVYI 162 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcC--CeEEEEEEc--c----cCCCHHHHHHHHHHHHh-cCCCEEEE
Confidence 356666789999876653 33345566677777765 555555532 1 223444444 33333 46666555
Q ss_pred CCC----ChhhhHHHHHHHHhhcC--CeEEEEeC
Q 020275 241 NCA----PPQFVENLICYFKELTK--KAIVVYPN 268 (328)
Q Consensus 241 NC~----~p~~~~~~l~~l~~~~~--~pl~~ypN 268 (328)
-=+ .|+.+...++.+++..+ .|+++...
T Consensus 163 ~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 163 VDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 433 39999999999988765 67776554
No 391
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=46.66 E-value=1.2e+02 Score=28.20 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEee
Q 020275 52 QPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAAS 131 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGs 131 (328)
+|+.+...=|-=.+.|||||.|+ |-.+++++ +++.+.+ +.+++|+|
T Consensus 164 d~~~v~~aaRlaaelGADIiK~~-ytg~~e~F---------------------~~vv~~~-----------~vpVviaG- 209 (265)
T COG1830 164 DADLVGYAARLAAELGADIIKTK-YTGDPESF---------------------RRVVAAC-----------GVPVVIAG- 209 (265)
T ss_pred cHHHHHHHHHHHHHhcCCeEeec-CCCChHHH---------------------HHHHHhC-----------CCCEEEeC-
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 020275 132 IGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQV 168 (328)
Q Consensus 132 iGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~ 168 (328)
||-.. +.+++.+..+..+++
T Consensus 210 -G~k~~----------------~~~~~l~~~~~ai~a 229 (265)
T COG1830 210 -GPKTE----------------TEREFLEMVTAAIEA 229 (265)
T ss_pred -CCCCC----------------ChHHHHHHHHHHHHc
No 392
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=46.57 E-value=1.1e+02 Score=28.36 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEe-cCC---------CHHH-HHHHHHHHHhcCCCccEEEEEEe
Q 020275 159 KDFHRRRLQVLVESGPDLLAFE-TIP---------NKLE-AQALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 159 ~~~h~~qi~~l~~~gvD~i~~E-T~~---------~~~E-~~a~~~~~~~~~~~~pv~is~~~ 210 (328)
.+.|.+.++.+. +++|+|=+. ..| +..+ ...+++++++.. ++|+++-++.
T Consensus 111 ~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p 171 (295)
T PF01180_consen 111 IEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSP 171 (295)
T ss_dssp HHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-S
T ss_pred HHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecC
Confidence 344566666666 789988664 222 2233 334566666653 6999999975
No 393
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=46.46 E-value=2.4e+02 Score=25.94 Aligned_cols=146 Identities=21% Similarity=0.229 Sum_probs=79.4
Q ss_pred HHHHHhcCCCeEEEecCCCHHHHH-HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC-
Q 020275 166 LQVLVESGPDLLAFETIPNKLEAQ-ALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA- 243 (328)
Q Consensus 166 i~~l~~~gvD~i~~ET~~~~~E~~-a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~- 243 (328)
++...+.|+|=|.|=.|..-.|-+ ..++.+++.. .-++|-|++-..- .+++++-..+. .+++=|.||-.
T Consensus 36 A~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A--~~vfiPltVGGGI-----~s~eD~~~ll~--aGADKVSINsaA 106 (256)
T COG0107 36 AKRYNEEGADELVFLDITASSEGRETMLDVVERVA--EQVFIPLTVGGGI-----RSVEDARKLLR--AGADKVSINSAA 106 (256)
T ss_pred HHHHHHcCCCeEEEEecccccccchhHHHHHHHHH--hhceeeeEecCCc-----CCHHHHHHHHH--cCCCeeeeChhH
Confidence 333445799999888787777764 4466666653 4577788773222 36777777775 37889999986
Q ss_pred --ChhhhHHHHHHHHhhcCCe-EEEEeCCCCccCCccccc---cC-CCCCChhHHHHHHHHHHHcCC-eE-------Eee
Q 020275 244 --PPQFVENLICYFKELTKKA-IVVYPNSGEVWDGRAKKW---LP-SKCLGDGKFESFATRWRDSGA-KL-------IGG 308 (328)
Q Consensus 244 --~p~~~~~~l~~l~~~~~~p-l~~ypN~g~~~d~~~~~~---~~-~~~~~~~~~~~~~~~~~~~G~-~i-------iGG 308 (328)
.|+ ++.++.+.+... +++--++-..+++....| .. ++..+.-+..+++++..+.|| -| =|-
T Consensus 107 v~~p~----lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt 182 (256)
T COG0107 107 VKDPE----LITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT 182 (256)
T ss_pred hcChH----HHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccc
Confidence 354 555555554432 333333322222211122 11 111112233444455555565 11 255
Q ss_pred cCCCChHHHHHHHHHH
Q 020275 309 CCRTTPSTIQAVSKVL 324 (328)
Q Consensus 309 CCGt~P~hI~al~~~l 324 (328)
.+|-.-++++++++.+
T Consensus 183 k~GyDl~l~~~v~~~v 198 (256)
T COG0107 183 KAGYDLELTRAVREAV 198 (256)
T ss_pred ccCcCHHHHHHHHHhC
Confidence 6666666777666654
No 394
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.30 E-value=3.1e+02 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCCeEEEe
Q 020275 163 RRRLQVLVESGPDLLAFE 180 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E 180 (328)
.+.++.+.+.|+|.|..-
T Consensus 205 ~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 205 KEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 346677778899998653
No 395
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.14 E-value=2.8e+02 Score=26.66 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCCHHHH---HHHHHHHHHHHHhcCCCeEEEec---------C-C--C----------HHH---HHHHHHHHHhc-CC--
Q 020275 152 GVDLEKL---KDFHRRRLQVLVESGPDLLAFET---------I-P--N----------KLE---AQALVELLEEE-NI-- 200 (328)
Q Consensus 152 ~~~~~e~---~~~h~~qi~~l~~~gvD~i~~ET---------~-~--~----------~~E---~~a~~~~~~~~-~~-- 200 (328)
.+|.+|+ .+.|..-++...++|.|.|=+=. + | + ... +..+++++++. +.
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~ 212 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHA 212 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 4666555 45566666667779999985432 1 1 1 112 22445555553 20
Q ss_pred CccEEEEEEecCCCCCCCCCCHHHHHHHH---HhcCCceEEEECCCC---h-----hhhHHHHHHHHhhc--CCeEEE
Q 020275 201 QIPSWICFSSVDGENAPSGESFKECLDII---NKSGKVNAVGINCAP---P-----QFVENLICYFKELT--KKAIVV 265 (328)
Q Consensus 201 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~~iGvNC~~---p-----~~~~~~l~~l~~~~--~~pl~~ 265 (328)
+.++.|.+.+..+.....|.++++.+..+ .+ .+++.|-|-+.. . ..-...++.+++.. +.|+++
T Consensus 213 ~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~ 289 (353)
T cd04735 213 DKDFILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA 289 (353)
T ss_pred CCCceEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE
Confidence 03444444443333345677888776544 33 467888776521 1 11233445555554 457654
No 396
>PRK09389 (R)-citramalate synthase; Provisional
Probab=46.07 E-value=3.4e+02 Score=27.57 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCeEEE-ecC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 020275 160 DFHRRRLQVLVESGPDLLAF-ETI--PNKLEAQALVELLEEENIQIPSWICFSSVDG 213 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~-ET~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~ 213 (328)
+|..+.++.+.+.|+|.|.+ -|+ ..+.+...+++.+++. .++-++|.+-++
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~---~~v~l~~H~HND 196 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL---VKGPVSIHCHND 196 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh---cCCeEEEEecCC
Confidence 44566677777899998755 454 3567888888877754 345578887665
No 397
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.03 E-value=2.3e+02 Score=25.55 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC------CCCCHHHHHHHHHhcCCce
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAP------SGESFKECLDIINKSGKVN 236 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~~~~~~~~~~~~~ 236 (328)
.+.++.|.+.|+|-+++-|..- +...+-+++++++ + +++|+..+++.-.. .+.++.++++.+.+. +.
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~--~~~~l~~~~~~~g-~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~--~~ 157 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAF--DLEFLEKVTSEFE-G--ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY--VN 157 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhc--CHHHHHHHHHHcC-C--EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH--hC
Confidence 3455666678999988865443 3344445555665 3 88899886542222 345667777766542 34
Q ss_pred EEEECCCC
Q 020275 237 AVGINCAP 244 (328)
Q Consensus 237 ~iGvNC~~ 244 (328)
.+-++...
T Consensus 158 ~ii~t~i~ 165 (228)
T PRK04128 158 RFIYTSIE 165 (228)
T ss_pred EEEEEecc
Confidence 55566643
No 398
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=45.94 E-value=2.1e+02 Score=25.28 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEEC
Q 020275 162 HRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvN 241 (328)
.++.++.|.+.|+|.|++- + .++++.+++.+.++|+++++.+.--. ...++.+.+ .++..+
T Consensus 4 ~~~~l~~l~~~g~dgi~v~---~----~g~~~~~k~~~~~~~i~~~~~~nv~N--------~~s~~~~~~-~G~~~i--- 64 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVS---N----PGLLELLKELGPDLKIIADYSLNVFN--------SESARFLKE-LGASRI--- 64 (233)
T ss_pred HHHHHHHHHhCCCCEEEEc---C----HHHHHHHHHhCCCCcEEEecCccCCC--------HHHHHHHHH-cCCCEE---
Confidence 4667888999999999865 3 34556777776579999998753222 345555544 233322
Q ss_pred CCChhhhHHHHHHHHhhc
Q 020275 242 CAPPQFVENLICYFKELT 259 (328)
Q Consensus 242 C~~p~~~~~~l~~l~~~~ 259 (328)
|.+|+.-..-|+.+.+..
T Consensus 65 ~ls~EL~~~ei~~i~~~~ 82 (233)
T PF01136_consen 65 TLSPELSLEEIKEIAENS 82 (233)
T ss_pred EECccCCHHHHHHHHHhC
Confidence 224565566666666655
No 399
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=45.83 E-value=2.7e+02 Score=26.38 Aligned_cols=134 Identities=14% Similarity=0.224 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCeEE-Ee---cCCCHHHHH--------HHHHHHHhc-CCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLA-FE---TIPNKLEAQ--------ALVELLEEE-NIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~-~E---T~~~~~E~~--------a~~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
.+.++.+.++|+|++. ++ ++-+.++-+ .+++.+++. + +.|++ -+.. |+ ...+..+
T Consensus 183 ~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~-~~~il-h~cg--------~~--~~~~~~~ 250 (338)
T TIGR01464 183 IEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLP-NVPVI-LFAK--------GA--GHLLEEL 250 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEE-EEeC--------Cc--HHHHHHH
Confidence 3456666779999875 55 344444444 234455543 2 34543 3421 22 2345555
Q ss_pred HhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCC----eE
Q 020275 230 NKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGA----KL 305 (328)
Q Consensus 230 ~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~----~i 305 (328)
.+ .++++++++-..+ + +..++..+.-+.+..|- ++. -+ . .++++..+.+++.++.+. -|
T Consensus 251 ~~-~~~~~~s~d~~~d--l----~e~~~~~~~~~~i~Gni----~p~---~l-~--gt~e~i~~~v~~~l~~~~~~~g~I 313 (338)
T TIGR01464 251 AE-TGADVVGLDWTVD--L----KEARKRVGPGVAIQGNL----DPA---VL-Y--APEEALEEKVEKILEAFGGKSRYI 313 (338)
T ss_pred Hh-cCCCEEEeCCCCC--H----HHHHHHhCCCeeEEeCC----ChH---Hh-c--CCHHHHHHHHHHHHHHhccCCCce
Confidence 55 4678888876521 2 23333334445566663 211 12 1 168889999999988754 46
Q ss_pred Ee-ecC---CCChHHHHHHHHHHh
Q 020275 306 IG-GCC---RTTPSTIQAVSKVLK 325 (328)
Q Consensus 306 iG-GCC---Gt~P~hI~al~~~l~ 325 (328)
+. ||. +|.++.|+++.++++
T Consensus 314 l~~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 314 FNLGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred ecCCCcCCCCcCHHHHHHHHHHHh
Confidence 65 453 678899999988865
No 400
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=45.68 E-value=1.4e+02 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
|-+|.+++.+.+.++. +...|.+-.++
T Consensus 84 LDHg~~~e~i~~ai~~--GftSVM~DgS~ 110 (286)
T PRK08610 84 LDHGSSFEKCKEAIDA--GFTSVMIDASH 110 (286)
T ss_pred CCCCCCHHHHHHHHHc--CCCEEEEeCCC
Confidence 3467777777766653 56677777775
No 401
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=45.56 E-value=2e+02 Score=26.12 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH---HhcCCceEEEEC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII---NKSGKVNAVGIN 241 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~~iGvN 241 (328)
.++.+++ .+-+++|+-++.-++.+=+.+.+.+..+.|.|.+.+..+. --+|.+++++...+ ...+++-..|+.
T Consensus 86 K~k~v~~---~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~-sK~G~~~~e~~~~~~~~~~~~~L~l~GLM 161 (228)
T COG0325 86 KVKLVAE---NFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEE-SKSGVPPEELDELAQEVQELPNLELRGLM 161 (228)
T ss_pred HHHHHHh---hcceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCcc-ccCCCCHHHHHHHHHHHHhCCCCeEeEEE
Confidence 4455543 4456688888777776655444444357789888864432 23788888776544 345788899999
Q ss_pred CCCh-----hhhHHHHHHHHh
Q 020275 242 CAPP-----QFVENLICYFKE 257 (328)
Q Consensus 242 C~~p-----~~~~~~l~~l~~ 257 (328)
|..| ......++.+++
T Consensus 162 ~ipp~~~d~~~~~~~F~~l~~ 182 (228)
T COG0325 162 TIPPLTDDPEEIFAVFRKLRK 182 (228)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 9753 344555555544
No 402
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=45.46 E-value=2.5e+02 Score=25.98 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHh-ccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 52 QPHLVKRVHLEYLEA-GADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~A-GAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
+.+.+++.-+.++++ |++-|..+--..-.. -++.+|-.++.+.+++.+. ++-..|+|
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~-----~Lt~~Er~~~~~~~~~~~~-----------------~~~~viag 76 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGF-----LLSVEERKQIAEIVAEAAK-----------------GKVTLIAH 76 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcc-----cCCHHHHHHHHHHHHHHhC-----------------CCCeEEec
Confidence 356777777778899 999776654332222 2355566666555554431 22234454
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe----cCCCHHHHHHHHHHHHhcCCCccEEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE----TIPNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E----T~~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
+|.. +.++. .++++...+.|+|.+++= .-++.+|+..-.+.+.+...++|+++
T Consensus 77 -v~~~------------------~~~~a----i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 77 -VGSL------------------NLKES----QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred -cCCC------------------CHHHH----HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3321 22332 445667778999998752 12355565555554443211589997
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 207 CFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
- ... ..+...-+.+ .+..+.+.+ ..+||--++
T Consensus 134 Y-n~P--~~tg~~l~~~-~~~~L~~~p--nivgiK~s~ 165 (288)
T cd00954 134 Y-HIP--ALTGVNLTLE-QFLELFEIP--NVIGVKFTA 165 (288)
T ss_pred E-eCc--cccCCCCCHH-HHHHHhcCC--CEEEEEeCC
Confidence 3 222 2222233444 344444433 456776654
No 403
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=45.05 E-value=3.1e+02 Score=26.85 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHH----hcCCCe-EEEecCCC-------HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC
Q 020275 154 DLEKLKDFHRRRLQVLV----ESGPDL-LAFETIPN-------KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES 221 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~----~~gvD~-i~~ET~~~-------~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 221 (328)
+.++..+.+.+-++.+. +.|.++ |++|.+|+ +..+..+++.+++.+ .|-.+.++++-.....-|.+
T Consensus 148 d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~~~~g~n 225 (382)
T TIGR02631 148 DVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHEQMAGLN 225 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhHhhcCCC
Confidence 45666666666665554 333333 67787754 233344445555543 44444454443444567888
Q ss_pred HHHHHHHHHhcCCceEEEEC
Q 020275 222 FKECLDIINKSGKVNAVGIN 241 (328)
Q Consensus 222 ~~~~~~~~~~~~~~~~iGvN 241 (328)
+.+++........+..|=+|
T Consensus 226 ~~~~i~~~l~~~kl~Hvhln 245 (382)
T TIGR02631 226 FTHGIAQALWAGKLFHIDLN 245 (382)
T ss_pred HHHHHHHHHhCCCEEEEecC
Confidence 88888744222344455555
No 404
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.84 E-value=2.7e+02 Score=26.06 Aligned_cols=100 Identities=7% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHhcCCCeEEEecCCC---------------HHHHHHHHHHHHhcCCCccEEEEE--EecCCCCCCCCCCHHHHHHHH
Q 020275 167 QVLVESGPDLLAFETIPN---------------KLEAQALVELLEEENIQIPSWICF--SSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~~~---------------~~E~~a~~~~~~~~~~~~pv~is~--~~~~~~~l~~G~~~~~~~~~~ 229 (328)
+...+.|+|.+.+-.-.| +++++.+++.+++.+...-+.|++ .+.++++. +=..+.+.++.+
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERL 164 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHH
Confidence 445578999876553222 335667788888776322333443 33444442 112233444444
Q ss_pred HhcCCceEEEECCC----ChhhhHHHHHHHHhhcC-CeEEEEeC
Q 020275 230 NKSGKVNAVGINCA----PPQFVENLICYFKELTK-KAIVVYPN 268 (328)
Q Consensus 230 ~~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~-~pl~~ypN 268 (328)
.+ .+++.|.+-=+ .|..+..+++.+++..+ .||.+...
T Consensus 165 ~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 207 (287)
T PRK05692 165 FA-LGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFH 207 (287)
T ss_pred HH-cCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 43 46666655433 59999999999987765 57776554
No 405
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=44.62 E-value=2.1e+02 Score=26.50 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCHH---HHHHHHHHHHhcCCCccEEEEEEec---CCC-C-------CCCCCCHH-HHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIPNKL---EAQALVELLEEENIQIPSWICFSSV---DGE-N-------APSGESFK-ECLDI 228 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~---E~~a~~~~~~~~~~~~pv~is~~~~---~~~-~-------l~~G~~~~-~~~~~ 228 (328)
++++.+.+.|+|-+.+-|.--.+ ....+-++.++++ +-.+++++.++ ++. + -.++.++. +.+..
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG-~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~ 166 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVG-KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEE 166 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHH
Confidence 47778888999999998742211 1233445556665 45789999986 221 1 22444565 77776
Q ss_pred HHhcCCceEEEECCCChhhh-----HHHHHHHHhhcCCeEEE
Q 020275 229 INKSGKVNAVGINCAPPQFV-----ENLICYFKELTKKAIVV 265 (328)
Q Consensus 229 ~~~~~~~~~iGvNC~~p~~~-----~~~l~~l~~~~~~pl~~ 265 (328)
+.+ . +..|.++-.+-+-+ ..+++.+.+..+.|+++
T Consensus 167 ~~~-~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIA 206 (253)
T TIGR02129 167 LSK-Y-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITY 206 (253)
T ss_pred HHh-h-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEE
Confidence 654 3 55666666543222 34667777767778766
No 406
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=44.56 E-value=1.4e+02 Score=27.85 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 169 LVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 169 l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
..+.|+|+|.+-.|.. .+++.+++.+++...++|++++ .|-+++.+.+.+. .++++|
T Consensus 199 A~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~As----------GGI~~~ni~~~~~--~Gvd~I 255 (272)
T cd01573 199 AAEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAAA----------GGINIENAAAYAA--AGADIL 255 (272)
T ss_pred HHHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEE----------CCCCHHHHHHHHH--cCCcEE
Confidence 3356777777776633 4566666655543223554433 3455555555443 245555
No 407
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=44.42 E-value=2.2e+02 Score=26.02 Aligned_cols=80 Identities=8% Similarity=0.014 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCeEEEecC---CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 164 RRLQVLVESGPDLLAFETI---PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
..++.+...|.|++++..= .+..++..++++++..+ ..++|-+. +.. ...+-+.++ .++.+|-+
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g--~~~~VRv~--------~~~-~~~i~~~Ld--~Ga~gIiv 90 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYP--SSPVVRPA--------IGD-PVLIKQLLD--IGAQTLLV 90 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcC--CCcEEECC--------CCC-HHHHHHHhC--CCCCEEEe
Confidence 3567788899999999844 45555555565555443 46666552 111 223334443 35666666
Q ss_pred CCC-ChhhhHHHHHHHH
Q 020275 241 NCA-PPQFVENLICYFK 256 (328)
Q Consensus 241 NC~-~p~~~~~~l~~l~ 256 (328)
-.+ +++.+..+++..+
T Consensus 91 P~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 91 PMIETAEQAEAAVAATR 107 (249)
T ss_pred cCcCCHHHHHHHHHHcC
Confidence 665 4666666666554
No 408
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=44.20 E-value=3.1e+02 Score=26.63 Aligned_cols=81 Identities=5% Similarity=-0.097 Sum_probs=45.1
Q ss_pred HHHHhcCCCeEEEecCC-CHH------HHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCC-------CHHHHHHHHHhc
Q 020275 167 QVLVESGPDLLAFETIP-NKL------EAQALVELLEEENIQIPSWICFSSVDGENAPSGE-------SFKECLDIINKS 232 (328)
Q Consensus 167 ~~l~~~gvD~i~~ET~~-~~~------E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~-------~~~~~~~~~~~~ 232 (328)
+..+..|+|.+.+=.++ +-. |+..+++.+++. ++|+++-.... ...+.+.. -+.-|++... .
T Consensus 153 edAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~--GlPlv~~~YpR-G~~i~~~~d~~~~~d~Ia~AaRiaa-E 228 (348)
T PRK09250 153 EDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL--GLATVLWSYLR-NSAFKKDGDYHTAADLTGQANHLAA-T 228 (348)
T ss_pred HHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh--CCCEEEEeccc-CcccCCcccccccHHHHHHHHHHHH-H
Confidence 33456899998765444 333 444445555555 49988755443 33333332 2334444443 3
Q ss_pred CCceEEEECCC-ChhhhHHH
Q 020275 233 GKVNAVGINCA-PPQFVENL 251 (328)
Q Consensus 233 ~~~~~iGvNC~-~p~~~~~~ 251 (328)
.+++.|=++-+ .++.+..+
T Consensus 229 LGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 229 IGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HcCCEEEecCCCChhhHHHh
Confidence 58899999976 34444443
No 409
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.14 E-value=2.9e+02 Score=26.27 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCeEEEecC-----C-----CH-HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLLAFETI-----P-----NK-LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~-----~-----~~-~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.+.++.+.+.|+|.|-+-.. + +. .....+++.+++.- ++|+++.++.. -+.+.+.+..+.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~-------~~~~~~~a~~l~~ 188 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPY-------FSNLANMAKRLDA 188 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCC-------chhHHHHHHHHHH
Confidence 45566667789999866321 1 11 12445666666553 69999988631 1245666666654
Q ss_pred cCCceEE-EECC
Q 020275 232 SGKVNAV-GINC 242 (328)
Q Consensus 232 ~~~~~~i-GvNC 242 (328)
.++++| -+|-
T Consensus 189 -~G~dgI~~~n~ 199 (334)
T PRK07565 189 -AGADGLVLFNR 199 (334)
T ss_pred -cCCCeEEEECC
Confidence 456654 3354
No 410
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=44.06 E-value=3e+02 Score=26.39 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cCC---------CHHHHHHHHHHHHhcC------CCccEEEEEEecCCCCCCCCCCHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TIP---------NKLEAQALVELLEEEN------IQIPSWICFSSVDGENAPSGESFK 223 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~~---------~~~E~~a~~~~~~~~~------~~~pv~is~~~~~~~~l~~G~~~~ 223 (328)
+.|.+.++.+.+ .+|+|-+. .-| +.+.+..+++++++.- ..+|+|+-++.+-. -..+.
T Consensus 154 ~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~-----~~~i~ 227 (335)
T TIGR01036 154 EDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT-----ESDLE 227 (335)
T ss_pred HHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC-----HHHHH
Confidence 345666676654 58998765 222 3345555666665431 13899999974211 11366
Q ss_pred HHHHHHHhcCCceE-EEECCC
Q 020275 224 ECLDIINKSGKVNA-VGINCA 243 (328)
Q Consensus 224 ~~~~~~~~~~~~~~-iGvNC~ 243 (328)
+.++.+.+ .++++ +.+|..
T Consensus 228 ~ia~~~~~-~GadGi~l~NT~ 247 (335)
T TIGR01036 228 DIADSLVE-LGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHH-hCCcEEEEECCC
Confidence 66666654 35665 667876
No 411
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=44.00 E-value=1.3e+02 Score=26.90 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=44.4
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH---HHhcCCceEEEECCCC
Q 020275 179 FETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI---INKSGKVNAVGINCAP 244 (328)
Q Consensus 179 ~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~iGvNC~~ 244 (328)
..++.+...++.+-+++++.+...+||+.+.+. ++..+.|.+..++... +...+++...|+-|..
T Consensus 98 ~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg-~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~ 165 (229)
T TIGR00044 98 VHTIDSLKIAKKLNEQREKLQPPLNVLLQINIS-DEESKSGIQPEELLELAIQIEELKHLKLRGLMTIG 165 (229)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEEECC-CCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeC
Confidence 367889988888888887766557788887653 2344678776655443 4444577788998853
No 412
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.78 E-value=2.4e+02 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEEN 199 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~ 199 (328)
..-++...++|+..|++=.+| ++|+....+.+++++
T Consensus 113 e~~iq~ak~aGanGfiivDlP-pEEa~~~Rne~~k~g 148 (268)
T KOG4175|consen 113 ENYIQVAKNAGANGFIIVDLP-PEEAETLRNEARKHG 148 (268)
T ss_pred HHHHHHHHhcCCCceEeccCC-hHHHHHHHHHHHhcC
Confidence 345666677888888776665 478888888888775
No 413
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.70 E-value=3e+02 Score=26.38 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC 242 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC 242 (328)
++.++.+.+.|-=.++.- + +.++....++..+ +..+ ++...+.- +.+.++++.+.+++..++++|-|.|
T Consensus 51 ~~LA~~a~~~G~~~~~~k-~-~~e~~~~~~r~~~--~~~l--~v~~~vg~-----~~~~~~~~~~Lv~ag~~~d~i~iD~ 119 (326)
T PRK05458 51 EKIAEWLAENGYFYIMHR-F-DPEARIPFIKDMH--EQGL--IASISVGV-----KDDEYDFVDQLAAEGLTPEYITIDI 119 (326)
T ss_pred HHHHHHHHHcCCEEEEec-C-CHHHHHHHHHhcc--cccc--EEEEEecC-----CHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 555666666676666666 3 6666554453332 2123 44444310 2233456666665422458999999
Q ss_pred CCh--hhhHHHHHHHHhhcC-CeEEE
Q 020275 243 APP--QFVENLICYFKELTK-KAIVV 265 (328)
Q Consensus 243 ~~p--~~~~~~l~~l~~~~~-~pl~~ 265 (328)
+++ ..+..+++.+++..+ .|+++
T Consensus 120 a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 120 AHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred CCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 975 678888999988765 45444
No 414
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.68 E-value=2.5e+02 Score=25.37 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
.+|++...++|++|++ -|... ..+++.+++.+ .|++ +.-.++.|+....+. +...|=+
T Consensus 81 ~e~a~~a~~aGA~FiV---sP~~~--~~v~~~~~~~~--i~~i-----------PG~~TpsEi~~A~~~--Ga~~vKl 138 (222)
T PRK07114 81 AATAALYIQLGANFIV---TPLFN--PDIAKVCNRRK--VPYS-----------PGCGSLSEIGYAEEL--GCEIVKL 138 (222)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC--HHHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHHC--CCCEEEE
Confidence 5688888899999998 34442 34667777664 8877 233678889887764 4444433
No 415
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=43.68 E-value=65 Score=29.15 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
...++.|.+.|+|+|++..|....+.+..++..- ++||++|=
T Consensus 168 ~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~----g~PVlLsr 209 (221)
T PF07302_consen 168 AAAARELAEQGADLIVLDCMGYTQEMRDIVQRAL----GKPVLLSR 209 (221)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHh----CCCEEeHH
Confidence 5567778889999999999999999887776432 69999764
No 416
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.64 E-value=2.8e+02 Score=25.89 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCCeEEEe----------------------cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCC
Q 020275 162 HRRRLQVLVESGPDLLAFE----------------------TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 162 h~~qi~~l~~~gvD~i~~E----------------------T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G 219 (328)
..+.++.|.++|+|+|=+- --.++.....+++.+++.+...|+++-...+.-. ..|
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~--~~G 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF--NYG 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH--Hhh
Confidence 4678889999999998332 1122333334455566555578988766543211 233
Q ss_pred CCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhc-CCeEEEEeCCCCcc----CCccccc---cCC------CC
Q 020275 220 ESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELT-KKAIVVYPNSGEVW----DGRAKKW---LPS------KC 285 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~-~~pl~~ypN~g~~~----d~~~~~~---~~~------~~ 285 (328)
++..++.+.+ .+++++.+-=-.++....+.+..+++- +.-+++-||+..-. ......+ ++. +.
T Consensus 111 --ie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~ 187 (265)
T COG0159 111 --IEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARN 187 (265)
T ss_pred --HHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCc
Confidence 3455666655 578888887776777776766666542 22345667765210 0000001 010 00
Q ss_pred CChhHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHHHh
Q 020275 286 LGDGKFESFATRWRDS-GAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~-G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
-......+.+++.++. .+.++=|=-=.+|+|.+++.+..+
T Consensus 188 ~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 188 PVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAAD 228 (265)
T ss_pred ccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCC
Confidence 0112245555555442 566666666679999999987743
No 417
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=43.64 E-value=1.7e+02 Score=27.66 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEE
Q 020275 223 KECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 223 ~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ 265 (328)
.+.+..+.+..+.-.+|.....|+.+...|++++..+++|+++
T Consensus 25 ~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgv 67 (307)
T TIGR03151 25 GSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGV 67 (307)
T ss_pred HHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEE
Confidence 3455555544455566666667888888888888777777654
No 418
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=43.62 E-value=19 Score=34.27 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++....|.+.+..|-+||||+|.|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 5667799999999999999999985
No 419
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=43.53 E-value=3.8e+02 Score=27.47 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=69.0
Q ss_pred HHHHHhccceeecCCcCCChhhH-HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCc
Q 020275 61 LEYLEAGADILVTSSYQATIPGF-LSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYL 139 (328)
Q Consensus 61 ~~yl~AGAdiI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l 139 (328)
+..+++|+++|.... .+|...+ ...+.+.++..+....+++.|++. +.. |.. ++-.
T Consensus 92 e~~~~~g~~~i~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~---------------G~~--v~~--~~e~--- 148 (524)
T PRK12344 92 QALLDAGTPVVTIFG-KSWDLHVTEALRTTLEENLAMIRDSVAYLKAH---------------GRE--VIF--DAEH--- 148 (524)
T ss_pred HHHHhCCCCEEEEEE-CCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc---------------CCe--EEE--cccc---
Confidence 445788999887764 3444443 444777666666666666666642 222 322 2210
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 020275 140 ADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWICFSSVDG 213 (328)
Q Consensus 140 ~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~ 213 (328)
|...|. .+. +|..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++. ..+.|+|.+=++
T Consensus 149 -----~~Da~r--~d~----~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~---~~v~i~~H~HND 211 (524)
T PRK12344 149 -----FFDGYK--ANP----EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA---PGVPLGIHAHND 211 (524)
T ss_pred -----cccccc--CCH----HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh---cCCeEEEEECCC
Confidence 000111 122 455667777888999988765 43 4568888888888764 346678888665
No 420
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.51 E-value=1.4e+02 Score=28.59 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCc--eEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKV--NAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~--~~iGv 240 (328)
.+.++.|.+-|||++=+-+..- .. ...++.+..+ ++|+++|--. .+=+.+..+++.+.+.... ..+.+
T Consensus 99 ~~svd~l~~~~v~~~KIaS~~~-~n-~pLL~~~A~~--gkPvilStGm------atl~Ei~~Av~~i~~~G~~~~~i~ll 168 (329)
T TIGR03569 99 LESADFLEDLGVPRFKIPSGEI-TN-APLLKKIARF--GKPVILSTGM------ATLEEIEAAVGVLRDAGTPDSNITLL 168 (329)
T ss_pred HHHHHHHHhcCCCEEEECcccc-cC-HHHHHHHHhc--CCcEEEECCC------CCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 4466777777888876554321 12 2244445544 5999988621 1112344566666543333 26777
Q ss_pred CCCC--h----hhhHHHHHHHHhhcCCeEEE
Q 020275 241 NCAP--P----QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 241 NC~~--p----~~~~~~l~~l~~~~~~pl~~ 265 (328)
-|++ | +.=+..++.|++.++.|++.
T Consensus 169 hC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~ 199 (329)
T TIGR03569 169 HCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY 199 (329)
T ss_pred EECCCCCCCcccCCHHHHHHHHHHhCCCEEE
Confidence 8974 3 23456677777777778773
No 421
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=43.40 E-value=29 Score=21.09 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=12.9
Q ss_pred HHHHHHHhccceeecC
Q 020275 59 VHLEYLEAGADILVTS 74 (328)
Q Consensus 59 iH~~yl~AGAdiI~Tn 74 (328)
..+..+++|+|-|.||
T Consensus 12 ~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHT-SEEEES
T ss_pred HHHHHHHcCCCEeeCC
Confidence 4478899999999997
No 422
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=43.33 E-value=1.7e+02 Score=27.97 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHh------cCCCeEEEecC--------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 164 RRLQVLVE------SGPDLLAFETI--------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 164 ~qi~~l~~------~gvD~i~~ET~--------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
+|+...++ +|+|+|++..| .++++++.+++.++. ..| +..+ .|-+++.+.++.
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~--lEaS--------GGIt~~ni~~yA 280 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFE--TEAS--------GNVTLDTVHKIG 280 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cce--EEEE--------CCCCHHHHHHHH
Confidence 45555667 89999999988 377888888776542 223 4443 466777666655
Q ss_pred HhcCCceEEEECC
Q 020275 230 NKSGKVNAVGINC 242 (328)
Q Consensus 230 ~~~~~~~~iGvNC 242 (328)
. .+++.|-+-.
T Consensus 281 ~--tGVD~Is~Ga 291 (308)
T PLN02716 281 Q--TGVTYISSGA 291 (308)
T ss_pred H--cCCCEEEeCc
Confidence 3 4677766655
No 423
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=43.24 E-value=1.9e+02 Score=27.20 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
|-+|.+++.+.+.++. +...|.+-+++
T Consensus 84 LDHg~~~e~i~~ai~~--GftSVM~DgS~ 110 (285)
T PRK07709 84 LDHGSSFEKCKEAIDA--GFTSVMIDASH 110 (285)
T ss_pred CCCCCCHHHHHHHHHc--CCCEEEEeCCC
Confidence 4477777777777753 56778888875
No 424
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=43.21 E-value=71 Score=29.47 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEe
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSS 210 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~ 210 (328)
+.|.+.+...++.|+.++.--|-.+.+|.+.+.+++++. +.|++++..+
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~--g~~v~~a~Nf 127 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKA--GIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcC--CccEEEECcc
Confidence 346778888888999999866766778888888887765 4888887653
No 425
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.04 E-value=2.2e+02 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCeEEEe---cCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 164 RRLQVLVESGPDLLAFE---TIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~E---T~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
..++.+...|.|++++. +-.+..++..++++++..+ .+.+|-+.
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g--~~~lVRvp 77 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSA--SAPVVRVP 77 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcC--CCcEEECC
Confidence 36777888999999998 4567788888888887654 77777764
No 426
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=42.79 E-value=3.1e+02 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCeEEEecCC-CHHHH
Q 020275 164 RRLQVLVESGPDLLAFETIP-NKLEA 188 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~-~~~E~ 188 (328)
..++.+.+.|+|.+-+.... ++.|+
T Consensus 225 ~~l~~~~e~g~dvl~~d~~~~dl~ea 250 (321)
T cd03309 225 SLVPSMAEMGVDSWNVVMTANNTAEL 250 (321)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHH
Confidence 35677778899999887665 77654
No 427
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.78 E-value=2.6e+02 Score=25.37 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHHHcCC---------eEE-eecCCCChHHHHHHHHHHh
Q 020275 285 CLGDGKFESFATRWRDSGA---------KLI-GGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 285 ~~~~~~~~~~~~~~~~~G~---------~ii-GGCCGt~P~hI~al~~~l~ 325 (328)
+++.+.|.+.++-.+++|+ +|| -..--|.|++++.|-..++
T Consensus 185 GIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 185 GIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred CccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3678889999999999997 455 7888899999999987765
No 428
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=42.64 E-value=3.3e+02 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHHcCC-e---EEeecCCCC------hHHHHHHHHHHh
Q 020275 287 GDGKFESFATRWRDSGA-K---LIGGCCRTT------PSTIQAVSKVLK 325 (328)
Q Consensus 287 ~~~~~~~~~~~~~~~G~-~---iiGGCCGt~------P~hI~al~~~l~ 325 (328)
++++..+.+++.++.+. . |++--||.. |++|+++-++++
T Consensus 329 t~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 329 TPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 68889999999998765 4 888777653 499999988875
No 429
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=42.50 E-value=97 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCeEEEecCC---------------CHHHHHHHHHHHHhcC
Q 020275 163 RRRLQVLVESGPDLLAFETIP---------------NKLEAQALVELLEEEN 199 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~~~~~~~ 199 (328)
.+.++.|.+.++-+|.+|++| ++.=-+++++++...+
T Consensus 98 ~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~lg 149 (511)
T TIGR00561 98 PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEFG 149 (511)
T ss_pred HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHhh
Confidence 678899999999999999999 3333567778877664
No 430
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=42.27 E-value=4.8e+02 Score=28.30 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH---h-cCCCe--EEEecCCCHHHHHHHHHHHHhcC
Q 020275 160 DFHRRRLQVLV---E-SGPDL--LAFETIPNKLEAQALVELLEEEN 199 (328)
Q Consensus 160 ~~h~~qi~~l~---~-~gvD~--i~~ET~~~~~E~~a~~~~~~~~~ 199 (328)
+.|+.|++++. + .|++- |++=.+.+.+|++.++++++..+
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g 662 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENG 662 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhC
Confidence 45666666653 4 57777 88999999999999999988653
No 431
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=41.90 E-value=3e+02 Score=25.87 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHcCCeEEeecCC-CChHHHHHHHHHHh
Q 020275 288 DGKFESFATRWRDSGAKLIGGCCR-TTPSTIQAVSKVLK 325 (328)
Q Consensus 288 ~~~~~~~~~~~~~~G~~iiGGCCG-t~P~hI~al~~~l~ 325 (328)
.++-.+.++.+.++||..|==-++ +++++|+++.+.++
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 567777788999999876554554 89999999998775
No 432
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=41.79 E-value=2.9e+02 Score=25.63 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHhc--CCCeEEEec------------CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHH
Q 020275 163 RRRLQVLVES--GPDLLAFET------------IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDI 228 (328)
Q Consensus 163 ~~qi~~l~~~--gvD~i~~ET------------~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 228 (328)
.+.++.+.++ ++|.|-+-. ..+.+.+..+++++++.- ++|+++-+.. +-+...+.+..
T Consensus 106 ~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~-------~~~~~~~~a~~ 177 (300)
T TIGR01037 106 AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP-------NVTDITEIAKA 177 (300)
T ss_pred HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC-------ChhhHHHHHHH
Confidence 4455556554 388886641 235567777888888753 6899888752 11234455555
Q ss_pred HHhcCCceEEEE
Q 020275 229 INKSGKVNAVGI 240 (328)
Q Consensus 229 ~~~~~~~~~iGv 240 (328)
+.+ .++++|-+
T Consensus 178 l~~-~G~d~i~v 188 (300)
T TIGR01037 178 AEE-AGADGLTL 188 (300)
T ss_pred HHH-cCCCEEEE
Confidence 544 46777654
No 433
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.61 E-value=58 Score=29.71 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCeEEEecCCCH--HHHHHHHHHHHhcCCCccEEEEE
Q 020275 163 RRRLQVLVESGPDLLAFETIPNK--LEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~~~~--~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
.+.++.+.++|.|.|++---..+ .++...++++|+.. ++|+|+-.
T Consensus 31 ~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilfP 77 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILFP 77 (240)
T ss_pred HHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEec
Confidence 66888999999999999844333 45888899999654 79999654
No 434
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=41.48 E-value=1.2e+02 Score=30.00 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=32.5
Q ss_pred HHHHHHH-HHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 186 LEAQALV-ELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 186 ~E~~a~~-~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
+.++.++ ++.++.. +.-+.|.-+|..+. -|++++.+++.+.+ .++..+-+||.
T Consensus 72 ~kL~~~I~~~~~~~~-p~~I~V~ttC~~~~---IGdDi~~v~~~~~~-~~~~vi~v~t~ 125 (427)
T cd01971 72 DRLRELIKSTLSIID-ADLFVVLTGCIAEI---IGDDVGAVVSEFQE-GGAPIVYLETG 125 (427)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCCcHHH---hhcCHHHHHHHhhh-cCCCEEEEECC
Confidence 4444443 4444443 34566666665444 68888888887743 45668889995
No 435
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.36 E-value=2.9e+02 Score=25.46 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCeEEEec-----------CCCHHH----HHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 165 RLQVLVESGPDLLAFET-----------IPNKLE----AQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET-----------~~~~~E----~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
-++...+.|+|.|.+-. -.+.+| ++.+++.+++.+ ..+.+++. +-.+.. -..+.+.++.+
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G--~~v~~~~e--da~r~~-~~~l~~~~~~~ 150 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG--IEVRFSSE--DSFRSD-LVDLLRVYRAV 150 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEE--eeCCCC-HHHHHHHHHHH
Confidence 35556678999876642 112234 444456666554 55555543 322221 11233444444
Q ss_pred HhcCCceEEEECCC----ChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 230 NKSGKVNAVGINCA----PPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 230 ~~~~~~~~iGvNC~----~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.+ .++..|.+-=+ .|..+..+++.+++..+.|+.+...
T Consensus 151 ~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~H 192 (262)
T cd07948 151 DK-LGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGH 192 (262)
T ss_pred HH-cCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 43 35666555433 4999999999998877777776553
No 436
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=41.18 E-value=5e+02 Score=28.12 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH----hcCCCe--EEEecCCCHHHHHHHHHHHHhcC
Q 020275 159 KDFHRRRLQVLV----ESGPDL--LAFETIPNKLEAQALVELLEEEN 199 (328)
Q Consensus 159 ~~~h~~qi~~l~----~~gvD~--i~~ET~~~~~E~~a~~~~~~~~~ 199 (328)
.+.|+.|++++. +.|++- |++=.+.+.+|++.++++++..+
T Consensus 609 ~~lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g 655 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEG 655 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhC
Confidence 455677777664 457777 88999999999999999998653
No 437
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=41.11 E-value=1.8e+02 Score=29.29 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=47.0
Q ss_pred cCCCeEEEecCCCHHHHH------HHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHH---HHHHHhc--CCceEEEE
Q 020275 172 SGPDLLAFETIPNKLEAQ------ALVELLEEENIQIPSWICFSSVDGENAPSGESFKEC---LDIINKS--GKVNAVGI 240 (328)
Q Consensus 172 ~gvD~i~~ET~~~~~E~~------a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~~--~~~~~iGv 240 (328)
.+.|++++|+...+.+.- ...+.++.. ..|+++-+.+. .|..+..+ +..+... ..+.+|-+
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l--~apVILV~d~~------~g~~~a~i~gt~~~l~~~~~~~i~GvIl 192 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLANMRIAELA--NADAILVADID------RGGVFASIYGTLKLLPENWRKLIKGIVI 192 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCchHHHHHHHh--CCCEEEEEeCC------ccHHHHHHHHHHHHhChhhcCceEEEEE
Confidence 478999999998776521 134555555 48988776442 12222222 2223221 24678999
Q ss_pred CCCCh--hhhHHHHHHHHhhcCCe
Q 020275 241 NCAPP--QFVENLICYFKELTKKA 262 (328)
Q Consensus 241 NC~~p--~~~~~~l~~l~~~~~~p 262 (328)
|++.+ ..+...++.+.+....|
T Consensus 193 Nrv~~~~~~~~~~~~~l~e~~gip 216 (475)
T TIGR00313 193 NKFRGNVDVLKSGIEKLEELTGIP 216 (475)
T ss_pred eccCCcHHHHHHHHHHHHHhhCCC
Confidence 99864 23445565555544444
No 438
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=40.96 E-value=79 Score=28.86 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCccc
Q 020275 98 EKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGA 137 (328)
Q Consensus 98 ~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~ 137 (328)
+.+++..+.||+.+ + +..+.||.-|.|.
T Consensus 205 eE~i~v~~~AR~~f----------~--~pv~iGCmrP~Ge 232 (275)
T COG1856 205 EEAIKVVKYARKKF----------P--NPVSIGCMRPRGE 232 (275)
T ss_pred HHHHHHHHHHHHhC----------C--CCeeEeecCcCch
Confidence 45666777777765 2 3678999999875
No 439
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=40.94 E-value=2.9e+02 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=18.3
Q ss_pred cCCChHHHHHHHHHHHHhccceeecCCc
Q 020275 49 LIKQPHLVKRVHLEYLEAGADILVTSSY 76 (328)
Q Consensus 49 ll~~Pe~V~~iH~~yl~AGAdiI~TnTy 76 (328)
.+++++.+.++=+.--++|.++.....|
T Consensus 34 ~ie~~~~~~~~A~~lk~~~~k~~r~~~~ 61 (260)
T TIGR01361 34 SVESEEQIMETARFVKEAGAKILRGGAF 61 (260)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCcee
Confidence 3677777777666666677776665444
No 440
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=40.82 E-value=24 Score=33.62 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++....|.+.+..|-+||||+|.|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 5666789999999999999999985
No 441
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=40.79 E-value=2.5e+02 Score=25.67 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCeEEEe---cCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 164 RRLQVLVESGPDLLAFE---TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~E---T~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
..++.+...|.|++++. +.-+..++..++++++..+ .+.+|-+ ...+...+-+.++ .++.+|-+
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g--~~~~VRv---------p~~~~~~i~r~LD--~Ga~gIiv 90 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSA--SAPVVRP---------PWNEPVIIKRLLD--IGFYNFLI 90 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcC--CCcEEEC---------CCCCHHHHHHHhc--CCCCEEEe
Q ss_pred CCCC-hhhhHHHHHHHH
Q 020275 241 NCAP-PQFVENLICYFK 256 (328)
Q Consensus 241 NC~~-p~~~~~~l~~l~ 256 (328)
-.+. ++....+++..+
T Consensus 91 P~v~taeea~~~v~a~k 107 (249)
T TIGR03239 91 PFVESAEEAERAVAATR 107 (249)
T ss_pred cCcCCHHHHHHHHHHcC
No 442
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.79 E-value=3.5e+02 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=23.0
Q ss_pred cCCChHHHHHHHHHHHHhccceeecCCcC
Q 020275 49 LIKQPHLVKRVHLEYLEAGADILVTSSYQ 77 (328)
Q Consensus 49 ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~ 77 (328)
.++.++.+.++=+.--++|+.++.-..|.
T Consensus 127 ~iE~~~~~~~~A~~lk~~g~~~~r~~~~k 155 (360)
T PRK12595 127 SVESYEQVEAVAKALKAKGLKLLRGGAFK 155 (360)
T ss_pred cccCHHHHHHHHHHHHHcCCcEEEccccC
Confidence 36778888888777778999999877774
No 443
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=39.93 E-value=3.8e+02 Score=26.49 Aligned_cols=125 Identities=11% Similarity=0.184 Sum_probs=69.7
Q ss_pred hcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccE--EEEEEecCCC--CCCCC---------CCHHHHHHHH--HhcCC
Q 020275 171 ESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPS--WICFSSVDGE--NAPSG---------ESFKECLDII--NKSGK 234 (328)
Q Consensus 171 ~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv--~is~~~~~~~--~l~~G---------~~~~~~~~~~--~~~~~ 234 (328)
..+|-+|..- .-|+.+++|+..-++...+ +.|- ++-+|..... .-..| ..++++.+.+ .....
T Consensus 211 ~~~IPvi~g~~~~p~~d~lK~lgAA~Atsg-s~~m~Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~ 289 (400)
T PF04412_consen 211 GDRIPVITGLERRPSEDDLKALGAAMATSG-SVAMFHIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDEK 289 (400)
T ss_pred CCCcCeEeCCCCCCCHHHHHHHhhhhhccc-ceeeEEEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCC
Confidence 3456565433 3488999999988887665 4543 3344332111 01111 1233344444 12247
Q ss_pred ceEEEECCCC--hhhhHHHHHHHHhhc---CCeEEEEeCCCCccCCccccccCCCCCChhHHHH--HHHHHHHcCCeEEe
Q 020275 235 VNAVGINCAP--PQFVENLICYFKELT---KKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFES--FATRWRDSGAKLIG 307 (328)
Q Consensus 235 ~~~iGvNC~~--p~~~~~~l~~l~~~~---~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~iiG 307 (328)
++.|-+-|-| .+.+..+.+.++... ..++.+.-... ..+...+ ++..+.++|++|+-
T Consensus 290 ~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~----------------v~~~a~~~G~~~~le~~G~~iv~ 353 (400)
T PF04412_consen 290 VDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRA----------------VYELAERMGYVERLEKAGVQIVT 353 (400)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHH----------------HHHHHHhCCHHHHHHHcCCEEEc
Confidence 8899999965 677777766665432 23443322110 1112333 66778899999999
Q ss_pred ecCCC
Q 020275 308 GCCRT 312 (328)
Q Consensus 308 GCCGt 312 (328)
++|=.
T Consensus 354 dTC~~ 358 (400)
T PF04412_consen 354 DTCMV 358 (400)
T ss_pred cccce
Confidence 99963
No 444
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=39.16 E-value=66 Score=30.09 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCeEEEe--cCCCHHHHHHHHHHHHhcCCCccEEEEE
Q 020275 161 FHRRRLQVLVESGPDLLAFE--TIPNKLEAQALVELLEEENIQIPSWICF 208 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~~~~~~~~~~pv~is~ 208 (328)
.|.+++...+++|..+|. | --.+++|++.+++++++.+ +.+.+.|
T Consensus 79 ~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~--~~l~v~~ 125 (342)
T COG0673 79 LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAG--VKLMVGF 125 (342)
T ss_pred hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--Cceeeeh
Confidence 356666666666764443 5 3456667776666666542 4444444
No 445
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.15 E-value=1.9e+02 Score=25.37 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHhcCCceEEEECCCC---hhhhHHHHHHHHhh
Q 020275 217 PSGESFKECLDIINKSGKVNAVGINCAP---PQFVENLICYFKEL 258 (328)
Q Consensus 217 ~~G~~~~~~~~~~~~~~~~~~iGvNC~~---p~~~~~~l~~l~~~ 258 (328)
-...+.++.++.+.+ .+++.|++.|+. ...+..+++.+++.
T Consensus 119 G~~vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 119 GRDVPIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CCCCCHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356788999998876 579999999974 45677788888776
No 446
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=39.13 E-value=2.6e+02 Score=24.37 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=47.1
Q ss_pred eEEEecCC-CHHH--HHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCC---hhhhH
Q 020275 176 LLAFETIP-NKLE--AQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAP---PQFVE 249 (328)
Q Consensus 176 ~i~~ET~~-~~~E--~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~---p~~~~ 249 (328)
-+++=|++ +.++ ...+...++..| .-| +. |....+.++.++.+.+ .+++.||+.|+. ...+.
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~v---i~------lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~ 151 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANG--FEV---ID------LGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMK 151 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCC--CEE---EE------CCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHH
Confidence 35556666 5566 344455666665 222 11 2256788899988876 478999999963 46677
Q ss_pred HHHHHHHhhc
Q 020275 250 NLICYFKELT 259 (328)
Q Consensus 250 ~~l~~l~~~~ 259 (328)
.+++.+++..
T Consensus 152 ~~i~~lr~~~ 161 (201)
T cd02070 152 EVIEALKEAG 161 (201)
T ss_pred HHHHHHHHCC
Confidence 7888887764
No 447
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.06 E-value=2.8e+02 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHh
Q 020275 163 RRRLQVLVESGPDLLAFE-TIPNKLEAQALVELLEE 197 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~ 197 (328)
.+.++.|.+.|+|.| | |+.+. +...+++.+++
T Consensus 30 ~~i~~al~~~Gi~~i--Eitl~~~-~~~~~I~~l~~ 62 (212)
T PRK05718 30 VPLAKALVAGGLPVL--EVTLRTP-AALEAIRLIAK 62 (212)
T ss_pred HHHHHHHHHcCCCEE--EEecCCc-cHHHHHHHHHH
Confidence 567778888888865 5 34333 55555555554
No 448
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.94 E-value=1.4e+02 Score=27.69 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
+|+....+.|+|+|.+..|+ +++++.+++.++. .+|+.++ .|-+++.+...+. .++++|.+
T Consensus 189 eea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~~---~ipi~As----------GGI~~~ni~~~a~--~Gvd~Isv 249 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNMK-PEEIKEAVQLLKG---RVLLEAS----------GGITLDNLEEYAE--TGVDVISS 249 (265)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEe
Confidence 45555567899999999874 4777777776532 2665543 4667776666554 46788777
No 449
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=38.94 E-value=3.2e+02 Score=25.34 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhc-CCeEEEEe
Q 020275 189 QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELT-KKAIVVYP 267 (328)
Q Consensus 189 ~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~-~~pl~~yp 267 (328)
..+++.+|+...+.+ |.+.+ .+++++.+.+. .+++.|++.-..|+.+..+++.++... +.|+.+
T Consensus 171 ~~av~~~R~~~~~~~--IgVev---------~t~eea~~A~~--~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~A-- 235 (272)
T cd01573 171 LKALARLRATAPEKK--IVVEV---------DSLEEALAAAE--AGADILQLDKFSPEELAELVPKLRSLAPPVLLAA-- 235 (272)
T ss_pred HHHHHHHHHhCCCCe--EEEEc---------CCHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhccCCCceEEE--
Confidence 345555665432343 44443 23577777664 478999998888888887877665431 344433
Q ss_pred CCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEe
Q 020275 268 NSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIG 307 (328)
Q Consensus 268 N~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 307 (328)
-+| ++++. +.+|.+.|+.+|.
T Consensus 236 sGG---------------I~~~n----i~~~~~~Gvd~I~ 256 (272)
T cd01573 236 AGG---------------INIEN----AAAYAAAGADILV 256 (272)
T ss_pred ECC---------------CCHHH----HHHHHHcCCcEEE
Confidence 222 34544 4457788987773
No 450
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=38.91 E-value=42 Score=32.13 Aligned_cols=39 Identities=8% Similarity=0.143 Sum_probs=32.7
Q ss_pred CChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHh
Q 020275 286 LGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLK 325 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~ 325 (328)
+++++|.+++++..+.+. ++|.+.|+++++++.+.+.++
T Consensus 66 ~~~E~~~sfvrk~k~~~L-~v~~SvG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 66 FDEESRIPFIKDMQERGL-FASISVGVKACEYEFVTQLAE 104 (321)
T ss_pred CCHHHHHHHHHhcccccc-EEEEEcCCCHHHHHHHHHHHh
Confidence 368888888888777787 899999999999999887765
No 451
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.87 E-value=3.3e+02 Score=25.42 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCCeEEEecC-----------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcC-CceE-EE
Q 020275 173 GPDLLAFETI-----------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSG-KVNA-VG 239 (328)
Q Consensus 173 gvD~i~~ET~-----------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~-~~~~-iG 239 (328)
++|.|=+-.- .+.+.+..+++++++.- ++|+++-++... +-+.+.++++.+.+.. ++++ +.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEEEE
Confidence 6888755421 24677888888888753 699999987532 1123445555443321 4443 33
Q ss_pred ECCCC------h----------------------hhhHHHHHHHHhhcC--CeEEEEeCCCCccCCccccccCCCCCChh
Q 020275 240 INCAP------P----------------------QFVENLICYFKELTK--KAIVVYPNSGEVWDGRAKKWLPSKCLGDG 289 (328)
Q Consensus 240 vNC~~------p----------------------~~~~~~l~~l~~~~~--~pl~~ypN~g~~~d~~~~~~~~~~~~~~~ 289 (328)
+|-.. + ......+.++++..+ .|++ .|+|. .+.+
T Consensus 193 ~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIi--g~GGI--------------~s~~ 256 (294)
T cd04741 193 TNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQII--GVGGV--------------LDGR 256 (294)
T ss_pred EccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEE--EeCCC--------------CCHH
Confidence 34331 1 011233345545443 3433 33331 1333
Q ss_pred HHHHHHHHHHHcCCeEEeecCCC---ChHHHHHHHHHHhc
Q 020275 290 KFESFATRWRDSGAKLIGGCCRT---TPSTIQAVSKVLKE 326 (328)
Q Consensus 290 ~~~~~~~~~~~~G~~iiGGCCGt---~P~hI~al~~~l~~ 326 (328)
+..+ .+..||+.|.-|-+. +|..++.|.+.|..
T Consensus 257 da~e----~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 257 GAFR----MRLAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred HHHH----HHHcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 4433 445799888877773 79999999887753
No 452
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=38.57 E-value=40 Score=28.63 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCC-C----hhhhHHHHHHHHhhc----CCeEEEEeCCCCccCCccccccCCCCC
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCA-P----PQFVENLICYFKELT----KKAIVVYPNSGEVWDGRAKKWLPSKCL 286 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~-~----p~~~~~~l~~l~~~~----~~pl~~ypN~g~~~d~~~~~~~~~~~~ 286 (328)
+.|++.+.+++..+.+.+.+.+|.||+. . .+....+++.++... .+|++++-- |. ..
T Consensus 55 mid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~-GT-------------~~ 120 (153)
T PF00549_consen 55 MIDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVC-GT-------------NA 120 (153)
T ss_dssp TT-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEE-ST-------------TC
T ss_pred CcCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEee-ee-------------cC
Confidence 4578889999988877678889999994 2 455566666665543 468887653 21 11
Q ss_pred ChhHHHHHHHHHHHcCCe
Q 020275 287 GDGKFESFATRWRDSGAK 304 (328)
Q Consensus 287 ~~~~~~~~~~~~~~~G~~ 304 (328)
+|+...+..+.+.+.|+.
T Consensus 121 dpq~~~~~~~~L~~~G~~ 138 (153)
T PF00549_consen 121 DPQGRMGQAGALEDAGVI 138 (153)
T ss_dssp HTTSCHHHHHHHHCTTCS
T ss_pred CCCCcHHHHHHHHhCCCc
Confidence 344455666777777774
No 453
>PRK04302 triosephosphate isomerase; Provisional
Probab=38.53 E-value=2.8e+02 Score=24.58 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=42.3
Q ss_pred HHHHHHhcCCCeEEEecC-----------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcC
Q 020275 165 RLQVLVESGPDLLAFETI-----------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSG 233 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~-----------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~ 233 (328)
+++.+.+.+.|+|.+|-. .....+..+++.+++...+.|++.-+.+. -.+.+..+.+ .
T Consensus 126 ~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~----------~~e~~~~~~~-~ 194 (223)
T PRK04302 126 TSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS----------TGEDVKAALE-L 194 (223)
T ss_pred HHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC----------CHHHHHHHHc-C
Confidence 444555667888877642 23455666666676643357777655331 1233333433 3
Q ss_pred CceEEEECCC--ChhhhHHHHHHH
Q 020275 234 KVNAVGINCA--PPQFVENLICYF 255 (328)
Q Consensus 234 ~~~~iGvNC~--~p~~~~~~l~~l 255 (328)
+++++.+.=. ..+.....++.+
T Consensus 195 gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 195 GADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred CCCEEEEehHHhCCcCHHHHHHHH
Confidence 5666555443 344444555444
No 454
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=38.03 E-value=2.8e+02 Score=24.33 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCeEEEecC----------------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 163 RRRLQVLVESGPDLLAFETI----------------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~ET~----------------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
...++.+.++|+|.|=+-.- .+...+..+++++++.- +.|+.+-+....+. . ....+.+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~---~-~~~~~~~ 144 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDD---E-EETLELA 144 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCC---c-hHHHHHH
Confidence 44555666689999855421 25666777888887653 46776655431111 1 2445566
Q ss_pred HHHHhcCCceEEEECCCCh------hhhHHHHHHHHhhcCCeEEE
Q 020275 227 DIINKSGKVNAVGINCAPP------QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~~p------~~~~~~l~~l~~~~~~pl~~ 265 (328)
..+.+ .+++.|-+..... ..-...++.+++..+.|+++
T Consensus 145 ~~l~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~ 188 (231)
T cd02801 145 KALED-AGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA 188 (231)
T ss_pred HHHHH-hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEE
Confidence 66654 4677776666421 12235556677666667654
No 455
>PLN02433 uroporphyrinogen decarboxylase
Probab=37.87 E-value=3.7e+02 Score=25.66 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC--HHHHHH-HHHhc-CCceEEEE
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES--FKECLD-IINKS-GKVNAVGI 240 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~--~~~~~~-~~~~~-~~~~~iGv 240 (328)
.++.+.+.|+|.|-+.-..++.|++..+ + -.+.|.-.++. .+..|+. +.+.+. .+++. .+...+..
T Consensus 245 ~~~~~~~~~~~~i~~d~~~dl~e~~~~~------g--~~~~l~GNi~p--~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~ 314 (345)
T PLN02433 245 LLERLAGTGVDVIGLDWTVDMADARRRL------G--SDVAVQGNVDP--AVLFGSKEAIEKEVRDVVKKAGPQGHILNL 314 (345)
T ss_pred HHHHHHhcCCCEEEcCCCCCHHHHHHHh------C--CCeEEEeCCCc--hhhCCCHHHHHHHHHHHHHHcCCCCeEEec
Confidence 3555667899999988888888754332 2 22333333332 3445542 233332 23322 12245666
Q ss_pred CCC-----ChhhhHHHHHHHHhh
Q 020275 241 NCA-----PPQFVENLICYFKEL 258 (328)
Q Consensus 241 NC~-----~p~~~~~~l~~l~~~ 258 (328)
-|. .++.+..+++..++.
T Consensus 315 Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 315 GHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Confidence 674 257788888777664
No 456
>PRK12435 ferrochelatase; Provisional
Probab=37.64 E-value=1.3e+02 Score=28.53 Aligned_cols=69 Identities=19% Similarity=0.055 Sum_probs=42.9
Q ss_pred hHHHHHHHHhh-cCCeEEEEeCCCCccCCccccccCCCCCChhHH-HHHHHHHHHcCCeEEeecC-CCChHHHHHHHHHH
Q 020275 248 VENLICYFKEL-TKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKF-ESFATRWRDSGAKLIGGCC-RTTPSTIQAVSKVL 324 (328)
Q Consensus 248 ~~~~l~~l~~~-~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~iiGGCC-Gt~P~hI~al~~~l 324 (328)
+...|+++.+. .-+.+++.|=++. .| .++ +-.+. .++...+.+.|..+.--+| +++|.+|++|++.+
T Consensus 234 t~d~l~~l~~~~G~k~v~vvpigFv-sD-----hlE----Tl~Eldie~~e~a~~~G~~~~r~~~lN~~p~fi~~La~lv 303 (311)
T PRK12435 234 VQDLTRDLYEEHGYKSFIYTPVGFV-AE-----HLE----VLYDNDYECKVVTDEIGAKYYRPEMPNADPLFIDALADVV 303 (311)
T ss_pred HHHHHHHHHHhcCCceEEEECCchh-hh-----hHH----HHHHHHHHHHHHHHHcCCcEEeccCCCCCHHHHHHHHHHH
Confidence 44566666543 3356777776542 11 111 23333 3344556788988777667 99999999999887
Q ss_pred hc
Q 020275 325 KE 326 (328)
Q Consensus 325 ~~ 326 (328)
..
T Consensus 304 ~~ 305 (311)
T PRK12435 304 LK 305 (311)
T ss_pred HH
Confidence 54
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=37.50 E-value=1.9e+02 Score=26.67 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 161 FHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.|..-++.++...+|.|++.-+-+.+.+.++++++. . +..+|-|+ +..+..+++..+..
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~-t--Gh~v~tTl---------Ha~~~~~ai~Rl~~ 195 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL-T--GHLVLSTL---------HTNDAPGAITRLLD 195 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH-c--CCcEEEEe---------ccCCHHHHHHHHHH
Confidence 356667777778999999999999999999999886 3 36688777 66777788877753
No 458
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=37.25 E-value=3.6e+02 Score=25.36 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEe------cCCCHH--------HHHHHHHHHHhcCCCccEEEEEEecCCCCCCCC
Q 020275 154 DLEKLKDFHRRRLQVLVESGPDLLAFE------TIPNKL--------EAQALVELLEEENIQIPSWICFSSVDGENAPSG 219 (328)
Q Consensus 154 ~~~e~~~~h~~qi~~l~~~gvD~i~~E------T~~~~~--------E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G 219 (328)
...++...|+..++.|.++|+++|=+- .++... ++ ...+.+.....+...-+.+.+....
T Consensus 148 ~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~v~~H~C~~~----- 221 (324)
T PF01717_consen 148 LLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEA-VAAEALNRAVKGEDATVGVHVCRGN----- 221 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHH-HHHHHHHHTTSTTTSEEEEEESSSC-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHH-HHHHHHHhccCCCCCEEEEEecCcc-----
Confidence 457888999999999999999877442 333322 11 1123333322234445555543221
Q ss_pred CCHHHHHHHHHhcCCceEEEECCCChh-hhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHH
Q 020275 220 ESFKECLDIINKSGKVNAVGINCAPPQ-FVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRW 298 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~iGvNC~~p~-~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
+......+.+ .+++++-+-+.... .-...|+.+......-+++.|... . .+ -++++..+.++++
T Consensus 222 --~~~~~~~l~~-~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lGvv~~~~-------~-~v----E~~e~v~~ri~~a 286 (324)
T PF01717_consen 222 --YPSILPLLAD-LNVDAFFLEFADRRAGDLEPLRELPSGKKVVLGVVDTKS-------P-EV----ESPEEVADRIEEA 286 (324)
T ss_dssp --HCTTHHHHHC-SS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEEES-TTS-------S-S------THHHHHHHHHHH
T ss_pred --chhhHHHHhh-cccceEEeecccCCcccHHHHHhCcCCceEEEEEEcCCC-------C-Cc----CCHHHHHHHHHHH
Confidence 1111134444 46888888887633 333444442221122345544321 0 11 2588899999988
Q ss_pred HHcCC---eEEeecCCCChHHHHHHHHHH
Q 020275 299 RDSGA---KLIGGCCRTTPSTIQAVSKVL 324 (328)
Q Consensus 299 ~~~G~---~iiGGCCGt~P~hI~al~~~l 324 (328)
.+.-. -++.-.||...-.-....++|
T Consensus 287 ~~~~~~~~l~~sPdCGfa~~~~~~a~~kL 315 (324)
T PF01717_consen 287 LEYVPLEQLWLSPDCGFASLTREEARAKL 315 (324)
T ss_dssp HTTS-GGGEEEEESSTSTTS-HHHHHHHH
T ss_pred HhcCccccEEEcCCCCCCCCCHHHHHHHH
Confidence 87742 468899998654443333333
No 459
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=37.10 E-value=30 Score=32.83 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHhccceeecC
Q 020275 50 IKQPHLVKRVHLEYLEAGADILVTS 74 (328)
Q Consensus 50 l~~Pe~V~~iH~~yl~AGAdiI~Tn 74 (328)
++....|.+.+..|-+||||+|.|.
T Consensus 294 ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 294 IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEee
Confidence 5777799999999999999999985
No 460
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.08 E-value=3.4e+02 Score=25.01 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHhccceeecCCcCCChhhHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEE
Q 020275 51 KQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLS-RGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVA 129 (328)
Q Consensus 51 ~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~Va 129 (328)
-+++-|+. .+++|++.|... +.+|...+.. .+.+.++..+....+++.|++ . + ..|.
T Consensus 72 ~~~~di~~----a~~~g~~~i~i~-~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~---~------------G--~~v~ 129 (262)
T cd07948 72 CHMDDARI----AVETGVDGVDLV-FGTSPFLREASHGKSITEIIESAVEVIEFVKS---K------------G--IEVR 129 (262)
T ss_pred CCHHHHHH----HHHcCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---C------------C--CeEE
Confidence 44444444 456899987754 4555544433 366655444444444444442 1 1 3444
Q ss_pred eecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCccEEE
Q 020275 130 ASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQIPSWI 206 (328)
Q Consensus 130 GsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~pv~i 206 (328)
.++-- ++ + .+.+.+ .+.++.+.+.|+|-|.+- |+ -++.++...+..+++. .|+-+
T Consensus 130 ~~~ed--a~-----------r--~~~~~l----~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~---~~~~i 187 (262)
T cd07948 130 FSSED--SF-----------R--SDLVDL----LRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV---VSCDI 187 (262)
T ss_pred EEEEe--eC-----------C--CCHHHH----HHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh---cCCeE
Confidence 44421 11 1 133444 345566667899887554 44 4567888888888865 33555
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHh
Q 020275 207 CFSSVDGENAPSGESFKECLDIINK 231 (328)
Q Consensus 207 s~~~~~~~~l~~G~~~~~~~~~~~~ 231 (328)
.+.+-++ .|..+..++..+..
T Consensus 188 ~~H~Hn~----~Gla~an~~~a~~a 208 (262)
T cd07948 188 EFHGHND----TGCAIANAYAALEA 208 (262)
T ss_pred EEEECCC----CChHHHHHHHHHHh
Confidence 7776444 36667777776654
No 461
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=37.04 E-value=3.2e+02 Score=24.78 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChh---hhHHHHHHHHhh
Q 020275 182 IPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQ---FVENLICYFKEL 258 (328)
Q Consensus 182 ~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~---~~~~~l~~l~~~ 258 (328)
+.+++-+..+++++++. ++||++-+.... +.....+.++.+.+ .++++|-|.+..+. .-...++++++.
T Consensus 117 l~dp~~l~~iv~av~~~--~~PVsvKiR~~~-----~~~~~~~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 117 LKNKELLKEFLTKMKEL--NKPIFVKIRGNC-----IPLDELIDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEE 188 (231)
T ss_pred cCCHHHHHHHHHHHHcC--CCcEEEEeCCCC-----CcchHHHHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHh
Confidence 34677777888888854 589888886521 22334466666655 58899999875432 345777888877
Q ss_pred cC-CeEEEEeCCC
Q 020275 259 TK-KAIVVYPNSG 270 (328)
Q Consensus 259 ~~-~pl~~ypN~g 270 (328)
.+ .|++ .|+|
T Consensus 189 ~~~ipII--gNGg 199 (231)
T TIGR00736 189 FNDKIII--GNNS 199 (231)
T ss_pred cCCCcEE--EECC
Confidence 64 6654 4655
No 462
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.97 E-value=2.1e+02 Score=28.52 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCCC-ccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 184 NKLEAQALVELLEEENIQ-IPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 184 ~~~E~~a~~~~~~~~~~~-~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
.-+.++.+++-+.+...+ .-++|--+|..+. -|++++.+++.+....+.-.+-++|.
T Consensus 101 g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l---iGdDi~~v~~~~~~~~~~pvi~v~t~ 158 (443)
T TIGR01862 101 GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL---IGDDIEAVAKEVSKEIGKDVVAVNCP 158 (443)
T ss_pred cHHHHHHHHHHHHHhCCccceEEEECCChHHH---hccCHHHHHHHHHHhcCCCEEEEecC
Confidence 344444444443333212 2244444444333 38999988887754445567888884
No 463
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=36.89 E-value=3.4e+02 Score=25.01 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred CeEEEecchH----------HHHHHC-CCCCCCccchhhhcCCChHHHHHHHHHHHHhccc--eeecCCcCCChhhHHh-
Q 020275 20 GCAVIDGGFA----------TQLETH-GASINDPLWSALYLIKQPHLVKRVHLEYLEAGAD--ILVTSSYQATIPGFLS- 85 (328)
Q Consensus 20 ~~lvlDGg~g----------t~L~~~-G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAd--iI~TnTy~as~~~l~~- 85 (328)
-+-|.||+.| ..|++. |++.- +..+.. -.++..++.....+-.+|.+ ++.|--...... -..
T Consensus 31 ~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i-~Hlt~r--~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~-~~~~ 106 (272)
T TIGR00676 31 FVSVTYGAGGSTRDRTVRIVRRIKKETGIPTV-PHLTCI--GATREEIREILREYRELGIRHILALRGDPPKGEG-TPTP 106 (272)
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHHhcCCCee-EEeeec--CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC-CCCC
Confidence 3789999775 455533 66532 223332 25677899999999999987 435554432211 000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 020275 86 RGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRR 165 (328)
Q Consensus 86 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~q 165 (328)
..++ .|++|.+.+++.+ .+..|.+..=|.|-. . . .+.++ ..++
T Consensus 107 ~~f~---------~a~~Li~~i~~~~------------~~f~ig~a~~Peghp---------~-~--~~~~~----~~~~ 149 (272)
T TIGR00676 107 GGFN---------YASELVEFIRNEF------------GDFDIGVAAYPEKHP---------E-A--PNLEE----DIEN 149 (272)
T ss_pred CCCC---------CHHHHHHHHHHhc------------CCeeEEEEeCCCCCC---------C-C--CCHHH----HHHH
Confidence 1122 2344444333321 246677766665421 0 0 12222 1223
Q ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 166 LQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 166 i~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
++.=.++|+|+|+==-+.+.+-....++.+++.+.++|++..+.
T Consensus 150 L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~ 193 (272)
T TIGR00676 150 LKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIM 193 (272)
T ss_pred HHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccC
Confidence 33445789999887777888888888888888887899998886
No 464
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.76 E-value=3.8e+02 Score=25.49 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCCCHHHH---HHHHHHHHHHHHhcCCCeEEEe------------cCCC-------------HHHHHHHHHHHHhc-CCC
Q 020275 151 PGVDLEKL---KDFHRRRLQVLVESGPDLLAFE------------TIPN-------------KLEAQALVELLEEE-NIQ 201 (328)
Q Consensus 151 ~~~~~~e~---~~~h~~qi~~l~~~gvD~i~~E------------T~~~-------------~~E~~a~~~~~~~~-~~~ 201 (328)
..++.+|+ .+.|.+-++...++|.|.|=+= ..++ ..-+..+++++|+. +.+
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d 216 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPG 216 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34666665 4555555666677999998432 1111 12233455666653 435
Q ss_pred ccEEEEEEecCCCCCCCCCCHHHHHHHHHh--cCCceEEEECCC---Chh--------------hhHHHHHHHHhhcCCe
Q 020275 202 IPSWICFSSVDGENAPSGESFKECLDIINK--SGKVNAVGINCA---PPQ--------------FVENLICYFKELTKKA 262 (328)
Q Consensus 202 ~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGvNC~---~p~--------------~~~~~l~~l~~~~~~p 262 (328)
.|+++-++..+ ....|.++++++..++. ..+++.|=|... .|. ......+++++.++.|
T Consensus 217 ~~v~vris~~~--~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 217 FPVGIKLNSAD--FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CeEEEEEcHHH--cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 67777776532 23456777777655432 135666554321 111 1135566777777788
Q ss_pred EEE
Q 020275 263 IVV 265 (328)
Q Consensus 263 l~~ 265 (328)
+++
T Consensus 295 Vi~ 297 (338)
T cd04733 295 LMV 297 (338)
T ss_pred EEE
Confidence 766
No 465
>PLN02826 dihydroorotate dehydrogenase
Probab=36.58 E-value=4.4e+02 Score=26.15 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEe-cCC---------CHHHHHHHHHHHHhc--------CCCccEEEEEEecCCCCCC
Q 020275 156 EKLKDFHRRRLQVLVESGPDLLAFE-TIP---------NKLEAQALVELLEEE--------NIQIPSWICFSSVDGENAP 217 (328)
Q Consensus 156 ~e~~~~h~~qi~~l~~~gvD~i~~E-T~~---------~~~E~~a~~~~~~~~--------~~~~pv~is~~~~~~~~l~ 217 (328)
++..+.|...++.+. ..+|+|-+- .-| +.+.+..+++.+++. ...+|+++-++.+-
T Consensus 200 ~~~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl----- 273 (409)
T PLN02826 200 EDAAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL----- 273 (409)
T ss_pred cccHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCC-----
Confidence 344455677777776 469998665 222 233445555555421 12589999987421
Q ss_pred CCCCHHHHHHHHHhcCCceE-EEECCCC--hh---------------------hhHHHHHHHHhhcC--CeEEEEeCCCC
Q 020275 218 SGESFKECLDIINKSGKVNA-VGINCAP--PQ---------------------FVENLICYFKELTK--KAIVVYPNSGE 271 (328)
Q Consensus 218 ~G~~~~~~~~~~~~~~~~~~-iGvNC~~--p~---------------------~~~~~l~~l~~~~~--~pl~~ypN~g~ 271 (328)
+-+.+.+.++.+.+ .++++ +-+|.+. |. ....++.++.+..+ .||+. .+|.
T Consensus 274 ~~~di~~ia~~a~~-~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIg--vGGI 350 (409)
T PLN02826 274 SKEDLEDIAAVALA-LGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVG--CGGV 350 (409)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEE--ECCC
Confidence 11246666665554 46665 5667542 11 12233344443332 23222 2221
Q ss_pred ccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCC---ChHHHHHHHHHHh
Q 020275 272 VWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRT---TPSTIQAVSKVLK 325 (328)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt---~P~hI~al~~~l~ 325 (328)
.+.++ +.+.+.+||+.|.-|.+. +|.-++.|.+.|.
T Consensus 351 --------------~sg~D----a~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~ 389 (409)
T PLN02826 351 --------------SSGED----AYKKIRAGASLVQLYTAFAYEGPALIPRIKAELA 389 (409)
T ss_pred --------------CCHHH----HHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHH
Confidence 12322 334567788888866653 6888888777764
No 466
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=36.39 E-value=3.6e+02 Score=25.10 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHhccceeecCCcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCC
Q 020275 64 LEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGS 143 (328)
Q Consensus 64 l~AGAdiI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~ 143 (328)
+++|++.|....--.........+.+.++.-+.....++.|++ ....|..++.-++.
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~-----------------~G~~v~~~~~d~~~------ 140 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK-----------------NGIEVNIYLEDWSN------ 140 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh-----------------CCCEEEEEEEeCCC------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe---cCCCHHHHHHHHHHHHhcCCCcc-EEEEEEecCCCCCCCC
Q 020275 144 EYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE---TIPNKLEAQALVELLEEENIQIP-SWICFSSVDGENAPSG 219 (328)
Q Consensus 144 eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~E---T~~~~~E~~a~~~~~~~~~~~~p-v~is~~~~~~~~l~~G 219 (328)
.|+-+. ++..+.++.+.+.|+|-|-+- -+-++.++...++.+++. .| +-+++.+-++. |
T Consensus 141 ~~r~~~----------~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~---~~~~~i~~H~Hnd~----G 203 (280)
T cd07945 141 GMRDSP----------DYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR---YPNLHFDFHAHNDY----D 203 (280)
T ss_pred CCcCCH----------HHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh---CCCCeEEEEeCCCC----C
Q ss_pred CCHHHHHHHHHhcCCceEE
Q 020275 220 ESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~i 238 (328)
..+..++..+.. ++..|
T Consensus 204 la~AN~laA~~a--Ga~~v 220 (280)
T cd07945 204 LAVANVLAAVKA--GIKGL 220 (280)
T ss_pred HHHHHHHHHHHh--CCCEE
No 467
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=36.36 E-value=1.1e+02 Score=27.42 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC---HHHHHHHHHhcCCceEEEECCC----ChhhhHHHHHHHHh
Q 020275 185 KLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES---FKECLDIINKSGKVNAVGINCA----PPQFVENLICYFKE 257 (328)
Q Consensus 185 ~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~~~~~~~~~~~~~~iGvNC~----~p~~~~~~l~~l~~ 257 (328)
.+|+..+++.+++.+ +|+++- ....+....+... +..+++.+.+ .+++.|=.+-. .-..-...++++..
T Consensus 111 ~~~i~~v~~~~~~~g--l~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e-~GaD~vKt~tg~~~~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 111 IEEIAAVVEECHKYG--LKVILE-PYLRGEEVADEKKPDLIARAARIAAE-LGADFVKTSTGKPVGATPEDVELMRKAVE 186 (236)
T ss_dssp HHHHHHHHHHHHTSE--EEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHH-TT-SEEEEE-SSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--cEEEEE-EecCchhhcccccHHHHHHHHHHHHH-hCCCEEEecCCccccccHHHHHHHHHHHH
Q ss_pred hcCCe--EEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHH---HcCCeEEeecCC
Q 020275 258 LTKKA--IVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWR---DSGAKLIGGCCR 311 (328)
Q Consensus 258 ~~~~p--l~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~iiGGCCG 311 (328)
..+.| +.+..-+| .+.++|.+...+.. +.|+..+|-++|
T Consensus 187 ~~~~p~~~~Vk~sGG---------------i~~~~~~~~l~~a~~~i~aGa~~~G~~~G 230 (236)
T PF01791_consen 187 AAPVPGKVGVKASGG---------------IDAEDFLRTLEDALEFIEAGADRIGTSSG 230 (236)
T ss_dssp THSSTTTSEEEEESS---------------SSHHHHHHSHHHHHHHHHTTHSEEEEEEH
T ss_pred hcCCCcceEEEEeCC---------------CChHHHHHHHHHHHHHHHcCChhHHHHHH
No 468
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=36.31 E-value=2.9e+02 Score=26.77 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHHHHhc--CCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCC-HHH---HHHHHHhcCCceE
Q 020275 164 RRLQVLVES--GPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGES-FKE---CLDIINKSGKVNA 237 (328)
Q Consensus 164 ~qi~~l~~~--gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~-~~~---~~~~~~~~~~~~~ 237 (328)
+++..+++. ++++.. .+.|..+++.+-+++++.+ +++.|-+.++. +..+.|-. .++ .++.+.+.+++..
T Consensus 87 ~~l~~l~~~~~~~~i~~--~vds~~~l~~L~~~a~~~g--~~~~v~i~vn~-g~~R~G~~~~~~~~~l~~~i~~~~~l~l 161 (382)
T cd06818 87 RRLAALLAADPDFEFFC--LVDSVDNVRALAAFFAALE--RPLNVLIELGV-PGGRTGVRTEAEALALADAIAASPALRL 161 (382)
T ss_pred HHHHHhhhcCCCCCEEE--EECCHHHHHHHHHHHHhcC--CceEEEEEECC-CCCCCCCCCHHHHHHHHHHHHcCCCceE
Confidence 345555543 455422 5678888888877777665 44444444443 34456653 343 4444444467888
Q ss_pred EEECCC
Q 020275 238 VGINCA 243 (328)
Q Consensus 238 iGvNC~ 243 (328)
.|+-|.
T Consensus 162 ~Gi~~~ 167 (382)
T cd06818 162 AGVEGY 167 (382)
T ss_pred eEEEee
Confidence 999996
No 469
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=36.31 E-value=3.7e+02 Score=25.28 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred HHHHHHHHhcC-CCeEEEecCCCHHHHHH---------HHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc
Q 020275 163 RRRLQVLVESG-PDLLAFETIPNKLEAQA---------LVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS 232 (328)
Q Consensus 163 ~~qi~~l~~~g-vD~i~~ET~~~~~E~~a---------~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 232 (328)
-+|++...++| |-+..+|-+|+--.... -++++++. .++||+--... + - +.++-....
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K~---~-----~-~~Ea~~L~e-- 85 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVRI---G-----H-FVEAQILEA-- 85 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeeeh---h-----H-HHHHHHHHH--
Confidence 45777777788 47788898886432211 13444444 27999844431 1 1 566655443
Q ss_pred CCceEEEECCCC-hhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeec-C
Q 020275 233 GKVNAVGINCAP-PQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGC-C 310 (328)
Q Consensus 233 ~~~~~iGvNC~~-p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGC-C 310 (328)
.+++.| -|+. +.....++..++...+.|+++ +...+.+ +.+..+.|+.+||-. +
T Consensus 86 aGvDiI--DaT~r~rP~~~~~~~iK~~~~~l~MA---------------------D~stleE-al~a~~~Gad~I~TTl~ 141 (283)
T cd04727 86 LGVDMI--DESEVLTPADEEHHIDKHKFKVPFVC---------------------GARNLGE-ALRRISEGAAMIRTKGE 141 (283)
T ss_pred cCCCEE--eccCCCCcHHHHHHHHHHHcCCcEEc---------------------cCCCHHH-HHHHHHCCCCEEEecCC
Confidence 467777 5874 333566777777655666655 1112333 344668899999854 2
Q ss_pred CCChH------HHHHHHHHH
Q 020275 311 RTTPS------TIQAVSKVL 324 (328)
Q Consensus 311 Gt~P~------hI~al~~~l 324 (328)
|-|++ |++.|...+
T Consensus 142 gyT~~~~~~~~~~~~i~~~i 161 (283)
T cd04727 142 AGTGNVVEAVRHMRAVNGEI 161 (283)
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 44444 666555544
No 470
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=36.08 E-value=3.2e+02 Score=24.43 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCeEEEec--CCCHHHHHHHHHHHHhcCCCccEEEEEEecCCC-----------CCCCCCCHHHHHHHHHh
Q 020275 165 RLQVLVESGPDLLAFET--IPNKLEAQALVELLEEENIQIPSWICFSSVDGE-----------NAPSGESFKECLDIINK 231 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET--~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~-----------~l~~G~~~~~~~~~~~~ 231 (328)
.++.+...|+|.+.+-| +.++.-+..+ .++.+ +-.+.+|+.++.+. ...+..+..+.+..+.+
T Consensus 85 d~~~~l~~G~~~v~ig~~~~~~p~~~~~i---~~~~~-~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 160 (243)
T cd04731 85 DARRLLRAGADKVSINSAAVENPELIREI---AKRFG-SQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE 160 (243)
T ss_pred HHHHHHHcCCceEEECchhhhChHHHHHH---HHHcC-CCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH
Confidence 44445557899887764 3444444444 44443 12366777765321 11123344455555554
Q ss_pred cCCceEEEECCCC-----hhhhHHHHHHHHhhcCCeEEE
Q 020275 232 SGKVNAVGINCAP-----PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 232 ~~~~~~iGvNC~~-----p~~~~~~l~~l~~~~~~pl~~ 265 (328)
.+++.|-+-... +..-..+++.+.+..+.|+++
T Consensus 161 -~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia 198 (243)
T cd04731 161 -LGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIA 198 (243)
T ss_pred -CCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEE
Confidence 467766664432 122346677777766777544
No 471
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=35.90 E-value=3.6e+02 Score=25.01 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCeEEEec---CCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 164 RRLQVLVESGPDLLAFET---IPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET---~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
..++.+...|.|++++.. --+..++...+++++..+ .+.+|-+.
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g--~~~lVRvp 76 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYA--SQPVIRPV 76 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcC--CCeEEECC
Confidence 356778889999999984 456778888888887654 66666663
No 472
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.87 E-value=4.5e+02 Score=26.09 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHHH-HHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhc----CCceEEEECCCC
Q 020275 186 LEAQALV-ELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKS----GKVNAVGINCAP 244 (328)
Q Consensus 186 ~E~~a~~-~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~----~~~~~iGvNC~~ 244 (328)
+.++.++ ++.++.. +.-+.|--+|..+. -|+++..+++.+.+. .++-.+-+||.+
T Consensus 77 ~~L~~~I~~~~~~~~-P~~I~V~ttC~~ei---IGDDi~~v~~~~~~e~p~~~~~pvi~v~tpg 136 (432)
T TIGR01285 77 EHIEEAIDTLCQRNK-PKAIGLLSTGLTET---RGEDIARVVRQFREKHPQHKGTAVVTVNTPD 136 (432)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEeCCCcccc---cccCHHHHHHHHHhhcccccCCeEEEecCCC
Confidence 3444343 4444332 33355544554443 688999888877542 145678899863
No 473
>PRK07094 biotin synthase; Provisional
Probab=35.83 E-value=1.9e+02 Score=27.14 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCeEEE--ecC-----------CCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHH
Q 020275 163 RRRLQVLVESGPDLLAF--ETI-----------PNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDII 229 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~--ET~-----------~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 229 (328)
.+.++.|.++|+|.+.+ ||. .+.++...+++.+++.+ .++...|.+--.+... +.+.+.+..+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~G--i~v~~~~iiGlpget~--ed~~~~l~~l 204 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELG--YEVGSGFMVGLPGQTL--EDLADDILFL 204 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC--CeecceEEEECCCCCH--HHHHHHHHHH
Q ss_pred HhcCCceEEEECCCCh
Q 020275 230 NKSGKVNAVGINCAPP 245 (328)
Q Consensus 230 ~~~~~~~~iGvNC~~p 245 (328)
.+ .++..++++-..|
T Consensus 205 ~~-l~~~~v~~~~~~P 219 (323)
T PRK07094 205 KE-LDLDMIGIGPFIP 219 (323)
T ss_pred Hh-CCCCeeeeecccc
No 474
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.65 E-value=2e+02 Score=28.11 Aligned_cols=142 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCCC----------------------HHHHHHHHHHHH
Q 020275 139 LADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPN----------------------KLEAQALVELLE 196 (328)
Q Consensus 139 l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~~----------------------~~E~~a~~~~~~ 196 (328)
+..+|-|.||-. ....+.+...++|+|.+|.+.. ...++.++.+++
T Consensus 1 Ig~~sGf~gD~~------------~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~ 68 (362)
T PF07287_consen 1 IGNGSGFWGDRP------------DAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAA 68 (362)
T ss_pred CeeecccccCcH------------HHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Q ss_pred hcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCc
Q 020275 197 EENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGR 276 (328)
Q Consensus 197 ~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~ 276 (328)
+.+ .|+++..-- .++....+.++.+.+..+.. +=|-++.-+.+...++++.. ....+--......+-...
T Consensus 69 ~~g--IkvI~NaGg------~np~~~a~~v~eia~e~Gl~-lkvA~V~gDd~~~~v~~~~~-~g~~~~~l~~~~~l~~~~ 138 (362)
T PF07287_consen 69 EKG--IKVITNAGG------LNPAGCADIVREIARELGLS-LKVAVVYGDDLKDEVKELLA-EGETIRPLDTGPPLSEWD 138 (362)
T ss_pred hCC--CCEEEeCCC------CCHHHHHHHHHHHHHhcCCC-eeEEEEECccchHhHHHHHh-CCCCCccCCCCCCcchhc
Q ss_pred cccccCCCCCChhHHHHHHHHHHHcCCeEE
Q 020275 277 AKKWLPSKCLGDGKFESFATRWRDSGAKLI 306 (328)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 306 (328)
......+-.+..+-+.+ .++.|+.||
T Consensus 139 ~~~~~a~aylGa~pI~~----AL~~GADIV 164 (362)
T PF07287_consen 139 DRIVSANAYLGAEPIVE----ALEAGADIV 164 (362)
T ss_pred cccceEEEecChHHHHH----HHHcCCCEE
No 475
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=35.64 E-value=1.8e+02 Score=28.53 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=32.2
Q ss_pred HHHHHHHH-HHHhcCCCcc--EEEEEEecCCCCCCCCCCHHHHHHHHHhcCC-ceEEEECCCC
Q 020275 186 LEAQALVE-LLEEENIQIP--SWICFSSVDGENAPSGESFKECLDIINKSGK-VNAVGINCAP 244 (328)
Q Consensus 186 ~E~~a~~~-~~~~~~~~~p--v~is~~~~~~~~l~~G~~~~~~~~~~~~~~~-~~~iGvNC~~ 244 (328)
+.++.+++ +.++. +.| +.|.-+|..+. -|++++.+++.+....+ +..|-+||.+
T Consensus 73 ~~L~~aI~~~~~~~--p~p~~i~V~~tc~~~l---iGdDi~~v~~~~~~~~~~~~vi~v~tpg 130 (415)
T cd01977 73 KKLKKNIIEAFKEF--PDIKRMTVYTTCTTAL---IGDDIKAVAKEVMEELPDVDIFVCNAPG 130 (415)
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEECCCchhh---hcCCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 44444443 44433 244 55555564444 49999988887764444 6688888853
No 476
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=35.56 E-value=3.7e+02 Score=25.02 Aligned_cols=142 Identities=14% Similarity=0.103 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHhccceeecC-CcCCChhhHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEe
Q 020275 52 QPHLVKRVHLEYLEAGADILVTS-SYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAA 130 (328)
Q Consensus 52 ~Pe~V~~iH~~yl~AGAdiI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaG 130 (328)
+.+.++++-+.+++.|+|-|..+ |.+= . .-++.+|-+++.+.+++.+. ++-..|+|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE-~-----~~Lt~eEr~~v~~~~~~~~~-----------------g~~pvi~g 80 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGE-F-----FSLTPAEYEQVVEIAVSTAK-----------------GKVPVYTG 80 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcC-c-----ccCCHHHHHHHHHHHHHHhC-----------------CCCcEEEe
Confidence 45678888888999999977654 3221 1 13455666666666655431 22345555
Q ss_pred ecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEecCC-----CHHHHHHHHHHHHhcCCCccEE
Q 020275 131 SIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIP-----NKLEAQALVELLEEENIQIPSW 205 (328)
Q Consensus 131 siGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~~l~~~gvD~i~~ET~~-----~~~E~~a~~~~~~~~~~~~pv~ 205 (328)
+|. . + ++. .++++...+.|+|.+++= -| +.+++..-.+.+.+. .++|++
T Consensus 81 -v~~-~-----------------t-~~a----i~~a~~a~~~Gadav~~~-pP~y~~~s~~~i~~~f~~v~~a-~~~pvi 134 (296)
T TIGR03249 81 -VGG-N-----------------T-SDA----IEIARLAEKAGADGYLLL-PPYLINGEQEGLYAHVEAVCES-TDLGVI 134 (296)
T ss_pred -cCc-c-----------------H-HHH----HHHHHHHHHhCCCEEEEC-CCCCCCCCHHHHHHHHHHHHhc-cCCCEE
Confidence 343 1 1 111 346777778999998773 33 334444434444333 368988
Q ss_pred EEEEecCCCCCCCC--CCHHHHHHHHHhcCCceEEEECCCC--hhhhHHHH
Q 020275 206 ICFSSVDGENAPSG--ESFKECLDIINKSGKVNAVGINCAP--PQFVENLI 252 (328)
Q Consensus 206 is~~~~~~~~l~~G--~~~~~~~~~~~~~~~~~~iGvNC~~--p~~~~~~l 252 (328)
+= + +.| -+.+...+.+++.+ ..+||--++ ...+..++
T Consensus 135 lY----n----~~g~~l~~~~~~~La~~~~--nvvgiKds~~d~~~~~~~~ 175 (296)
T TIGR03249 135 VY----Q----RDNAVLNADTLERLADRCP--NLVGFKDGIGDMEQMIEIT 175 (296)
T ss_pred EE----e----CCCCCCCHHHHHHHHhhCC--CEEEEEeCCCCHHHHHHHH
Confidence 62 1 234 34443333333234 456666543 45555444
No 477
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=35.56 E-value=5.6e+02 Score=27.63 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEe-----cCCCHHHHHHHHHHHHhcCC---CccEEEEEEecCCCCCCCCCCHHHHH
Q 020275 155 LEKLKDFHRRRLQVLVESGPDLLAFE-----TIPNKLEAQALVELLEEENI---QIPSWICFSSVDGENAPSGESFKECL 226 (328)
Q Consensus 155 ~~e~~~~h~~qi~~l~~~gvD~i~~E-----T~~~~~E~~a~~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~ 226 (328)
.+++...|++.++.|.++||+.|=+. +..+..+...+.++.+.... +.++.++..+.+-+ ++.
T Consensus 179 l~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~---------~~~ 249 (758)
T PRK05222 179 LDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGSLN---------DAL 249 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccchh---------hHH
Confidence 47788899999999999999987332 33344456666666555321 24666666543211 233
Q ss_pred HHHHhcCCceEEEECCCC
Q 020275 227 DIINKSGKVNAVGINCAP 244 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC~~ 244 (328)
..+.+ .+++++++-+++
T Consensus 250 ~~l~~-l~Vd~l~LD~~~ 266 (758)
T PRK05222 250 DLLAS-LPVDGLHLDLVR 266 (758)
T ss_pred HHHHc-CCCCEEEEEeeC
Confidence 33433 346666666653
No 478
>PRK11579 putative oxidoreductase; Provisional
Probab=35.54 E-value=1.2e+02 Score=28.86 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCeEEEe--cCCCHHHHHHHHHHHHhcCCCccEEEEEE
Q 020275 161 FHRRRLQVLVESGPDLLAFE--TIPNKLEAQALVELLEEENIQIPSWICFS 209 (328)
Q Consensus 161 ~h~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~~~~~~~~~~pv~is~~ 209 (328)
.|.+++...+++|..+| +| --.+++|++.+++++++.+ +++++.+.
T Consensus 76 ~H~~~~~~al~aGkhVl-~EKPla~t~~ea~~l~~~a~~~g--~~l~v~~~ 123 (346)
T PRK11579 76 THFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSAG--RVLSVFHN 123 (346)
T ss_pred HHHHHHHHHHHCCCeEE-EeCCCCCCHHHHHHHHHHHHHhC--CEEEEEee
Confidence 47888888888998866 47 4458899999999888764 66666664
No 479
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.52 E-value=2.6e+02 Score=23.17 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHhcCCceEEEECCC---ChhhhHHHHHHHHhhcC--CeEEEEeCCCCccCCccccccCCCCCChhHHH
Q 020275 218 SGESFKECLDIINKSGKVNAVGINCA---PPQFVENLICYFKELTK--KAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFE 292 (328)
Q Consensus 218 ~G~~~~~~~~~~~~~~~~~~iGvNC~---~p~~~~~~l~~l~~~~~--~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~ 292 (328)
--.+.++.++.+.+ .++++||++.- +...+..+++.+++..- .++++ +|.. ...++++.
T Consensus 37 ~~v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~viv---GG~~------------vi~~~d~~ 100 (134)
T TIGR01501 37 VLSPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYV---GGNL------------VVGKQDFP 100 (134)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEe---cCCc------------CcChhhhH
Confidence 34678889988876 47899999883 35678888888876521 22222 1110 02355677
Q ss_pred HHHHHHHHcCC-eEEeecCCCChHHHHH
Q 020275 293 SFATRWRDSGA-KLIGGCCRTTPSTIQA 319 (328)
Q Consensus 293 ~~~~~~~~~G~-~iiGGCCGt~P~hI~a 319 (328)
+...++.+.|+ +++|+ ||.|++|-.
T Consensus 101 ~~~~~l~~~Gv~~vF~p--gt~~~~iv~ 126 (134)
T TIGR01501 101 DVEKRFKEMGFDRVFAP--GTPPEVVIA 126 (134)
T ss_pred HHHHHHHHcCCCEEECc--CCCHHHHHH
Confidence 66677888896 56664 567766644
No 480
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.18 E-value=3.5e+02 Score=25.89 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCC-cccCcCCCC-CCCCCCCCCCCHHHHHHHHH
Q 020275 86 RGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGS-YGAYLADGS-EYSGNYGPGVDLEKLKDFHR 163 (328)
Q Consensus 86 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP-~g~~l~~~~-eY~g~y~~~~~~~e~~~~h~ 163 (328)
..++.++++++.+.-++-|+.|.+. .=+-|-|-|.-|- ...+|++.. -.+..|+. +.+.-..+-.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~a-----------GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~ 191 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREA-----------GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG--SFENRMRFPV 191 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-----------CCCEEEEecccchHHHHhcCCccCCCcCccCC--CHHHHhHHHH
Confidence 3577788888888888888777653 1134667665332 122233221 12344543 5666666667
Q ss_pred HHHHHHHh-cCCCeEE------EecC---CCHHHHHHHHHHHHhcCCCccEEEEEEec-CCCCCC-----CCC-CHHHHH
Q 020275 164 RRLQVLVE-SGPDLLA------FETI---PNKLEAQALVELLEEENIQIPSWICFSSV-DGENAP-----SGE-SFKECL 226 (328)
Q Consensus 164 ~qi~~l~~-~gvD~i~------~ET~---~~~~E~~a~~~~~~~~~~~~pv~is~~~~-~~~~l~-----~G~-~~~~~~ 226 (328)
+.++++.+ -|.|+.+ .|.. .+++|+..+++.+.+.+ +- +|+++.. .+..+. .+. ...+.+
T Consensus 192 eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G--~d-~i~vs~g~~e~~~~~~~~~~~~~~~~~~~ 268 (353)
T cd02930 192 EIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG--AD-ILNTGIGWHEARVPTIATSVPRGAFAWAT 268 (353)
T ss_pred HHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC--CC-EEEeCCCcCCCCCccccccCCchhhHHHH
Confidence 77777755 3678754 3443 57888888888888765 32 3344321 011111 111 123344
Q ss_pred HHHHhcCCceEEEECC--CChhhhHHHHHHH-Hhh--cCCeEEEEeC
Q 020275 227 DIINKSGKVNAVGINC--APPQFVENLICYF-KEL--TKKAIVVYPN 268 (328)
Q Consensus 227 ~~~~~~~~~~~iGvNC--~~p~~~~~~l~~l-~~~--~~~pl~~ypN 268 (328)
+.+++...+ -|..|. ..|+.+..+|+.- .+. ..+++++-|+
T Consensus 269 ~~ik~~v~i-PVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~ 314 (353)
T cd02930 269 AKLKRAVDI-PVIASNRINTPEVAERLLADGDADMVSMARPFLADPD 314 (353)
T ss_pred HHHHHhCCC-CEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCcc
Confidence 445443222 233333 3577777777642 111 2345666665
No 481
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=35.11 E-value=2.9e+02 Score=23.70 Aligned_cols=87 Identities=11% Similarity=0.245 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 189 QALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 189 ~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
..+++.+++.....+- |-+-+ ++++++.+.+. .+++.|.+--.+|+.+.++++.++....... +-..
T Consensus 67 ~~av~~~~~~~~~~~~-I~VEv---------~~~ee~~ea~~--~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~-ie~S 133 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKK-IEVEV---------ENLEEAEEALE--AGADIIMLDNMSPEDLKEAVEELRELNPRVK-IEAS 133 (169)
T ss_dssp HHHHHHHHHHSTTTSE-EEEEE---------SSHHHHHHHHH--TT-SEEEEES-CHHHHHHHHHHHHHHTTTSE-EEEE
T ss_pred HHHHHHHHHhCCCCce-EEEEc---------CCHHHHHHHHH--hCCCEEEecCcCHHHHHHHHHHHhhcCCcEE-EEEE
Confidence 4455566654323432 34432 35778887775 3688999888899999999998876544422 2122
Q ss_pred CCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEe
Q 020275 269 SGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIG 307 (328)
Q Consensus 269 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 307 (328)
+| ++++...+ +.+.|+.+|+
T Consensus 134 GG---------------I~~~ni~~----ya~~gvD~is 153 (169)
T PF01729_consen 134 GG---------------ITLENIAE----YAKTGVDVIS 153 (169)
T ss_dssp SS---------------SSTTTHHH----HHHTT-SEEE
T ss_pred CC---------------CCHHHHHH----HHhcCCCEEE
Confidence 22 34555555 4467887776
No 482
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.82 E-value=2.9e+02 Score=26.54 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 164 RRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
+.++.|.+-+||++=+-+.. +.. ...++.+.++ ++||++|--. .+=..+..+++.+.+......+.+-|+
T Consensus 101 ~svd~l~~~~v~~~KI~S~~-~~n-~~LL~~va~~--gkPvilstG~------~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 101 TAVDFLESLDVPAYKIASFE-ITD-LPLIRYVAKT--GKPIIMSTGI------ATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred HHHHHHHHcCCCEEEECCcc-ccC-HHHHHHHHhc--CCcEEEECCC------CCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 35566666778877655421 111 1233444434 5999988621 111223456666654333356778897
Q ss_pred C--h----hhhHHHHHHHHhhcCCeEEE
Q 020275 244 P--P----QFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 244 ~--p----~~~~~~l~~l~~~~~~pl~~ 265 (328)
+ | +.=+..+..+++.++.|++.
T Consensus 171 s~YP~~~~~~nL~~i~~lk~~f~~pVG~ 198 (327)
T TIGR03586 171 SSYPAPLEDANLRTIPDLAERFNVPVGL 198 (327)
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCEEe
Confidence 4 3 22345667777766677755
No 483
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=34.62 E-value=2.9e+02 Score=27.10 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhccceeecCCcCCCh
Q 020275 54 HLVKRVHLEYLEAGADILVTSSYQATI 80 (328)
Q Consensus 54 e~V~~iH~~yl~AGAdiI~TnTy~as~ 80 (328)
+++.++|+-|.+-.+..+..|-...+.
T Consensus 179 ~~~~~l~~~f~~~d~~l~EINPl~~~~ 205 (392)
T PRK14046 179 KTIMGCYRAFRDLDATMLEINPLVVTK 205 (392)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcceEcC
Confidence 578899999999999999888765543
No 484
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=34.59 E-value=4.6e+02 Score=25.85 Aligned_cols=89 Identities=10% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEE-EEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWIC-FSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
.++.+.+.|+|++.+-..++......+++.+++.+ .++.+. +++ .++++.+.. +.+ .+++.|++.-.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G--~~~~~g~~s~--------~t~~e~~~~-a~~-~GaD~I~~~pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG--VRLMADLINV--------PDPVKRAVE-LEE-LGVDYINVHVG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC--CEEEEEecCC--------CCHHHHHHH-HHh-cCCCEEEEEec
Confidence 67778889999998644444444566778888764 666653 222 233443333 333 35677766542
Q ss_pred C-----hhhhHHHHHHHHhhcCCeEEE
Q 020275 244 P-----PQFVENLICYFKELTKKAIVV 265 (328)
Q Consensus 244 ~-----p~~~~~~l~~l~~~~~~pl~~ 265 (328)
. +......+++++...+.|+++
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a 167 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAV 167 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEE
Confidence 1 122335667776655567655
No 485
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.55 E-value=3.4e+02 Score=24.30 Aligned_cols=68 Identities=12% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCeEE--EecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEE
Q 020275 163 RRRLQVLVESGPDLLA--FETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~--~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGv 240 (328)
...++.|.++|+|.|. +|+..++ ..+++.+|+.+ ..+-+++. -+++++.....+.....+...++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~---~~~l~~ik~~g--~k~Glaln--------P~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHV---DRTLQLIKEHG--CQAGVVLN--------PATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccH---HHHHHHHHHcC--CcEEEEeC--------CCCCHHHHHHHHHhCCeEEEEEe
Confidence 3457888899999974 5765554 45677788776 55555553 46777766666655444555556
Q ss_pred CCC
Q 020275 241 NCA 243 (328)
Q Consensus 241 NC~ 243 (328)
|=.
T Consensus 138 ~PG 140 (220)
T PRK08883 138 NPG 140 (220)
T ss_pred cCC
Confidence 553
No 486
>COG1679 Predicted aconitase [General function prediction only]
Probab=34.40 E-value=1e+02 Score=30.22 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEec-CCCHHHHHHHHHHHHhcC--CCccEEEEEE
Q 020275 153 VDLEKLKDFHRRRLQVLVESGPDLLAFET-IPNKLEAQALVELLEEEN--IQIPSWICFS 209 (328)
Q Consensus 153 ~~~~e~~~~h~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~~~~~~~--~~~pv~is~~ 209 (328)
++.+++.+.+.+. . .....+|+|.+-+ .-|+.|++.+.++++..+ .++|+||+.+
T Consensus 271 i~~~d~~da~~~l-~-~~~~epdli~iGcPHaS~~E~~~la~~l~~r~~~~~~~~~V~~s 328 (403)
T COG1679 271 IEREDIDDAWERL-N-TADGEPDLIALGCPHASLEELRRLAELLKGRKRPAGVPLYVTTS 328 (403)
T ss_pred eeHHHHHHHHHHh-h-cCCCCCCEEEeCCCCCCHHHHHHHHHHHhccCCCCCCCEEEEcC
Confidence 3455555555433 2 3344689999884 568899999999999765 5789999885
No 487
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=34.40 E-value=1.8e+02 Score=28.78 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCeEEeecCCCChHHHHHHHHHHhc
Q 020275 302 GAKLIGGCCRTTPSTIQAVSKVLKE 326 (328)
Q Consensus 302 G~~iiGGCCGt~P~hI~al~~~l~~ 326 (328)
.++||||+ .+|.++++|++.|+.
T Consensus 157 ~VNlig~~--~~~~D~~ei~~lL~~ 179 (429)
T cd03466 157 KINVIAGM--MSPADIREIKEILRE 179 (429)
T ss_pred cEEEECCC--CChhHHHHHHHHHHH
Confidence 37888887 568888888877753
No 488
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.23 E-value=3.7e+02 Score=24.56 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCeEEEecCCCH-----HHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEE
Q 020275 164 RRLQVLVESGPDLLAFETIPNK-----LEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAV 238 (328)
Q Consensus 164 ~qi~~l~~~gvD~i~~ET~~~~-----~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 238 (328)
+.++.+.+.|+|-|++=-+... .....+-+..++. +.|++++--+ .+++++...+. .++..+
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~--~~pv~~gGGi---------~s~~d~~~l~~--~G~~~v 100 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASEC--FMPLCYGGGI---------KTLEQAKKIFS--LGVEKV 100 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhC--CCCEEECCCC---------CCHHHHHHHHH--CCCCEE
Confidence 3566666778877654333222 2233334444433 5888754311 35677666653 367788
Q ss_pred EECCC---ChhhhHHHHHHH
Q 020275 239 GINCA---PPQFVENLICYF 255 (328)
Q Consensus 239 GvNC~---~p~~~~~~l~~l 255 (328)
-+|.. .|+.+..+++..
T Consensus 101 vigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 101 SINTAALEDPDLITEAAERF 120 (258)
T ss_pred EEChHHhcCHHHHHHHHHHh
Confidence 88985 365666665555
No 489
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.11 E-value=3.7e+02 Score=24.53 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=49.5
Q ss_pred CceEEEECCC--ChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecC-
Q 020275 234 KVNAVGINCA--PPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCC- 310 (328)
Q Consensus 234 ~~~~iGvNC~--~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCC- 310 (328)
+++.+.+-+. ....+..+++..++. ...+.+++- +. ...+++.+.+.+++..+.|+..|. .|
T Consensus 98 g~~~iri~~~~s~~~~~~~~i~~ak~~-G~~v~~~~~-----~~--------~~~~~~~~~~~~~~~~~~G~d~i~-l~D 162 (263)
T cd07943 98 GVDVVRVATHCTEADVSEQHIGAARKL-GMDVVGFLM-----MS--------HMASPEELAEQAKLMESYGADCVY-VTD 162 (263)
T ss_pred CCCEEEEEechhhHHHHHHHHHHHHHC-CCeEEEEEE-----ec--------cCCCHHHHHHHHHHHHHcCCCEEE-EcC
Confidence 5666665443 345566666666553 333333331 00 113688899999999999998875 34
Q ss_pred ---CCChHHHHHHHHHHhc
Q 020275 311 ---RTTPSTIQAVSKVLKE 326 (328)
Q Consensus 311 ---Gt~P~hI~al~~~l~~ 326 (328)
..+|+.++.+-+.++.
T Consensus 163 T~G~~~P~~v~~lv~~l~~ 181 (263)
T cd07943 163 SAGAMLPDDVRERVRALRE 181 (263)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 3489999988887754
No 490
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=34.08 E-value=3.6e+02 Score=24.47 Aligned_cols=94 Identities=18% Similarity=0.143 Sum_probs=55.3
Q ss_pred cCCCeEEEecCC--CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC--Chhh
Q 020275 172 SGPDLLAFETIP--NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA--PPQF 247 (328)
Q Consensus 172 ~gvD~i~~ET~~--~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~--~p~~ 247 (328)
.++|++=+|... ....++.+++.+++. +..+++|.. +-..+++-+.+.+.+..+.+ .+++.+=+-|. ++..
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~--~~~vI~S~H--~F~~TP~~~~l~~~~~~m~~-~gaDi~KiAv~~~~~~D 170 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQY--NKEVVISHH--NFESTPPLDELKFIFFKMQK-FNPEYVKLAVMPHNKND 170 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHc--CCEEEEecC--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEEecCCCHHH
Confidence 458999999653 455566666667655 488999986 22223333334445554443 35666666664 5777
Q ss_pred hHHHHHHHHhh---cCCeEEE--EeCCC
Q 020275 248 VENLICYFKEL---TKKAIVV--YPNSG 270 (328)
Q Consensus 248 ~~~~l~~l~~~---~~~pl~~--ypN~g 270 (328)
+..+++...+. .+.|+++ +.+.|
T Consensus 171 vl~Ll~~~~~~~~~~~~p~i~i~MG~~G 198 (238)
T PRK13575 171 VLNLLQAMSTFSDTMDCKVVGISMSKLG 198 (238)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCCCC
Confidence 77777655432 3456544 44444
No 491
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=34.07 E-value=2.8e+02 Score=26.16 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=37.4
Q ss_pred CCCeEEEecCC-----CHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC
Q 020275 173 GPDLLAFETIP-----NKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA 243 (328)
Q Consensus 173 gvD~i~~ET~~-----~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~ 243 (328)
++|.|.+.+|. +..+++.+.+++++.+. .++-|-++ .|-+++.+.+... .+++.||+-..
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~-~~~~ieaS--------GgI~~~~i~~~a~--~gvD~isvGs~ 275 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIRGY-KHVKIFVS--------GGLDEEDIKELED--VGVDAFGVGTA 275 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCC-CCeEEEEe--------CCCCHHHHHHHHH--cCCCEEECCcc
Confidence 58888888885 55566777777766531 23444443 5666666665543 35777777664
No 492
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=33.89 E-value=5.3e+02 Score=26.35 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEe-cC--CCHHHHHHHHHHHHhcCCCc-cEEEEEEecCC
Q 020275 160 DFHRRRLQVLVESGPDLLAFE-TI--PNKLEAQALVELLEEENIQI-PSWICFSSVDG 213 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~~~~~~~~~~-pv~is~~~~~~ 213 (328)
++..+.++.+.+.|+|.|-+- |+ -.+.++..+++.+++.-.+. .+.|+|.+=++
T Consensus 239 efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND 296 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHND 296 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCC
Confidence 344667777788999988654 54 35678888888887641122 27788887555
No 493
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=33.79 E-value=4e+02 Score=26.45 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCeE-----EEe--cCCCHHHHHHHHHHHHh--cCCCccEEEEEEecCCCCCCCCCCHHHHHHHHH
Q 020275 160 DFHRRRLQVLVESGPDLL-----AFE--TIPNKLEAQALVELLEE--ENIQIPSWICFSSVDGENAPSGESFKECLDIIN 230 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i-----~~E--T~~~~~E~~a~~~~~~~--~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 230 (328)
+.|.+++..+...|+|+| +.. ..|-.+-++++.+++++ ..++...+-++.+ +|. ..+..+..+
T Consensus 159 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~-~~em~~ra~ 230 (406)
T cd08207 159 EETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI-------TDD-IDEMRRNHD 230 (406)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCC-HHHHHHHHH
Q ss_pred hc--CCceEEEECCCChhhhHHHHHHHHhhcCCeEEEEeC
Q 020275 231 KS--GKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPN 268 (328)
Q Consensus 231 ~~--~~~~~iGvNC~~p~~~~~~l~~l~~~~~~pl~~ypN 268 (328)
.. .+..++.+|.. ..-...++.+++..+.||.+.|+
T Consensus 231 ~~~~~G~~~~mv~~~--~~G~~~l~~l~~~~~l~IhaHra 268 (406)
T cd08207 231 LVVEAGGTCVMVSLN--SVGLSGLAALRRHSQLPIHGHRN 268 (406)
T ss_pred HHHHhCCCeEEEecc--ccchHHHHHHHhcCCceEEECCC
No 494
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=33.78 E-value=3.3e+02 Score=26.15 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCC-C-----C-----CCCCCCHHHHHH---HHH
Q 020275 165 RLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDG-E-----N-----APSGESFKECLD---IIN 230 (328)
Q Consensus 165 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~-~-----~-----l~~G~~~~~~~~---~~~ 230 (328)
.++..++.|+..+. +.|..|++.+.+.+++.+...++++-+....+ . . .+-|.+.+++.+ .+.
T Consensus 83 ~l~~a~~~gi~~i~---vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~ 159 (377)
T cd06843 83 ELAQALAQGVERIH---VESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR 159 (377)
T ss_pred HHHHHHHcCCCEEE---eCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHH
Confidence 34555567887764 56778888888877766545677877765322 0 0 134777665444 333
Q ss_pred hcCCceEEEECC
Q 020275 231 KSGKVNAVGINC 242 (328)
Q Consensus 231 ~~~~~~~iGvNC 242 (328)
+..++...|+-|
T Consensus 160 ~~~~l~~~Glh~ 171 (377)
T cd06843 160 DLPNIRLRGFHF 171 (377)
T ss_pred hCCCccEEEEEE
Confidence 333555666643
No 495
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.78 E-value=3.4e+02 Score=24.03 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCccEEEE
Q 020275 163 RRRLQVLVESGPDLLAFE-TIPNKLEAQALVELLEEENIQIPSWIC 207 (328)
Q Consensus 163 ~~qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~~~~~~~~~~pv~is 207 (328)
.+.++.+.+.|+.+| | |+.+..-.+.+..+.++.+ .++.|.
T Consensus 25 ~~~~~a~~~gGi~~i--Evt~~~~~~~~~i~~l~~~~~--~~~~iG 66 (206)
T PRK09140 25 LAHVGALIEAGFRAI--EIPLNSPDPFDSIAALVKALG--DRALIG 66 (206)
T ss_pred HHHHHHHHHCCCCEE--EEeCCCccHHHHHHHHHHHcC--CCcEEe
Confidence 668899999999876 4 4444433333333333343 344443
No 496
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=33.74 E-value=53 Score=33.48 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=25.0
Q ss_pred cCCCeEEEec-CCCHHHHHHHHHHHHhc
Q 020275 172 SGPDLLAFET-IPNKLEAQALVELLEEE 198 (328)
Q Consensus 172 ~gvD~i~~ET-~~~~~E~~a~~~~~~~~ 198 (328)
..+|+||.|| -|++.+++...+.+++.
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~ 405 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSK 405 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6799999999 89999999999999975
No 497
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=33.62 E-value=18 Score=20.67 Aligned_cols=8 Identities=50% Similarity=1.468 Sum_probs=4.7
Q ss_pred ecCCCChH
Q 020275 308 GCCRTTPS 315 (328)
Q Consensus 308 GCCGt~P~ 315 (328)
||||.-|.
T Consensus 1 gccg~ypn 8 (26)
T PF07829_consen 1 GCCGPYPN 8 (26)
T ss_dssp --STTSSS
T ss_pred CCccCCCC
Confidence 79998774
No 498
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=33.48 E-value=42 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCHHHH
Q 020275 160 DFHRRRLQVLVESGPDLLAFETIPNKLEA 188 (328)
Q Consensus 160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~ 188 (328)
++-...+++-+..|+|.|++||-|+++++
T Consensus 217 e~v~~larAAvA~GaDGl~iEvHpdP~~A 245 (281)
T PRK12457 217 RQVLDLARAGMAVGLAGLFLEAHPDPDRA 245 (281)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 33455667777899999999999998764
No 499
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.45 E-value=4.1e+02 Score=24.92 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEECCCC
Q 020275 216 APSGESFKECLDIINKSGKVNAVGINCAP 244 (328)
Q Consensus 216 l~~G~~~~~~~~~~~~~~~~~~iGvNC~~ 244 (328)
|-+|.+++.+.+.++. +...|.+-+++
T Consensus 81 LDH~~~~e~i~~ai~~--GftSVMiDgS~ 107 (284)
T PRK12737 81 LDHHEDLDDIKKKVRA--GIRSVMIDGSH 107 (284)
T ss_pred CCCCCCHHHHHHHHHc--CCCeEEecCCC
Confidence 5578888877777763 57788888886
No 500
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.44 E-value=4.5e+02 Score=25.39 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHHcCCeEEeecCC----CChHHHHHHHHHHhc
Q 020275 286 LGDGKFESFATRWRDSGAKLIGGCCR----TTPSTIQAVSKVLKE 326 (328)
Q Consensus 286 ~~~~~~~~~~~~~~~~G~~iiGGCCG----t~P~hI~al~~~l~~ 326 (328)
.+++.+.+.++++.+.|+..|. .|- .+|+.+..+-+.++.
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~-l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRIN-IADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEE-EeCCCCccCHHHHHHHHHHHhc
Confidence 3688899999999999997765 333 389999988877753
Done!