BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020276
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
           Poz Protein
          Length = 159

 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISVYLAMV 78
            ++  I  FS   E   E  KS  F +G     KW L V P G   E+        L + 
Sbjct: 13  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 72

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFIPLEEFI 137
              S     EV   F+  +L+ K +E      AM  QR +  ++  +WGF +FI  +  +
Sbjct: 73  CPKS-----EVRAKFKFSILNAKGEE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLL 123

Query: 138 NASNGYLVGDTCVFGAEVFV 157
           + +NG L  D      EV V
Sbjct: 124 DEANGLLPDDKLTLFCEVSV 143



 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 25/151 (16%)

Query: 179 YKYVWKIENFSKLPDKIYE---SEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELT 232
           + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+YL L 
Sbjct: 12  FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 71

Query: 233 DSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATG-EWLNTSIALGGW 291
                   S++   F   I N   +K  E KA           F  G +W        G+
Sbjct: 72  SCPK----SEVRAKFKFSILN---AKGEETKA---MESQRAYRFVQGKDW--------GF 113

Query: 292 SKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322
            KFI  ++L    NG L +D   +  EV V+
Sbjct: 114 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 144


>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
           Macroh2asbcpep1
 pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmath-Cisbc2
 pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmath-Cisbc2
 pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmath-Pucsbc1_pep1
          Length = 145

 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISVYLAMV 78
            ++  I  FS   E   E  KS  F +G     KW L V P G   E+        L + 
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 71

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFIPLEEFI 137
              S     EV   F+  +L+ K +E      AM  QR +  ++  +WGF +FI  +  +
Sbjct: 72  CPKS-----EVRAKFKFSILNAKGEE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLL 122

Query: 138 NASNGYLVGDTCVFGAEVFV 157
           + +NG L  D      EV V
Sbjct: 123 DEANGLLPDDKLTLFCEVSV 142



 Score = 32.0 bits (71), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 25/151 (16%)

Query: 179 YKYVWKIENFSKLPDKIYE---SEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELT 232
           + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+YL L 
Sbjct: 11  FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70

Query: 233 DSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATG-EWLNTSIALGGW 291
                   S++   F   I N   +K  E KA           F  G +W        G+
Sbjct: 71  SCPK----SEVRAKFKFSILN---AKGEETKA---MESQRAYRFVQGKDW--------GF 112

Query: 292 SKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322
            KFI  ++L    NG L +D   +  EV V+
Sbjct: 113 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 143


>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
          Length = 312

 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 13/146 (8%)

Query: 16  SHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHIS 72
           S V    ++  I  FS   E   E  KS  F +G     KW L V P G   E+      
Sbjct: 2   SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61

Query: 73  VYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFI 131
             L +    S     EV   F+  +L+ K +E      AM  QR +  ++  +WGF +FI
Sbjct: 62  YLLLVSCPKS-----EVRAKFKFSILNAKGEE----TKAMESQRAYRFVQGKDWGFKKFI 112

Query: 132 PLEEFINASNGYLVGDTCVFGAEVFV 157
                ++ +NG L  D      EV V
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSV 138



 Score = 32.0 bits (71), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 25/154 (16%)

Query: 179 YKYVWKIENFSKLPDKIYE---SEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELT 232
           + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+YL   
Sbjct: 7   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL--- 63

Query: 233 DSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATG-EWLNTSIALGGW 291
                   S++   F   I N   +K  E KA           F  G +W        G+
Sbjct: 64  -LLVSCPKSEVRAKFKFSILN---AKGEETKA---MESQRAYRFVQGKDW--------GF 108

Query: 292 SKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGIS 325
            KFI   +L    NG L +D   +  EV V+  S
Sbjct: 109 KKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS 142


>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmathx-Macroh2asbcpep1
 pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin
           Ligases:spopmathx-Pucsbc1_pep2
 pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin
           Ligases:spopmathx-Pucsbc1_pep2
 pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmathx-Cisbc2
 pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmathx-Cisbc2
 pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmathx-Macroh2asbcpep2
 pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopmathx-Macroh2asbcpep2
          Length = 145

 Score = 35.8 bits (81), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISVYLAMV 78
            ++  I  FS   E   E  KS  F +G     KW L V P G   E+        L + 
Sbjct: 12  SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 71

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFIPLEEFI 137
              S     EV   F+  +L+ K +E      AM  QR +  ++  +WGF +FI     +
Sbjct: 72  CPKS-----EVRAKFKFSILNAKGEE----TKAMESQRAYRFVQGKDWGFKKFIRRGFLL 122

Query: 138 NASNGYLVGDTCVFGAEVFV 157
           + +NG L  D      EV V
Sbjct: 123 DEANGLLPDDKLTLFCEVSV 142



 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 25/151 (16%)

Query: 179 YKYVWKIENFSKLPDKIYE---SEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELT 232
           + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+YL L 
Sbjct: 11  FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70

Query: 233 DSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATG-EWLNTSIALGGW 291
                   S++   F   I N   +K  E KA           F  G +W        G+
Sbjct: 71  SCPK----SEVRAKFKFSILN---AKGEETKA---MESQRAYRFVQGKDW--------GF 112

Query: 292 SKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322
            KFI   +L    NG L +D   +  EV V+
Sbjct: 113 KKFIRRGFLLDEANGLLPDDKLTLFCEVSVV 143


>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
          Length = 143

 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 7   ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 61

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 62  ESDSTSWSCHAQAVLKIINYRDDE-------KSFSRRISHLFFHKENDWGFSNFMAWSEV 114

Query: 137 INASNGYLVGDTCVFGAEVFVK 158
            +   G++  D   F  EVFV+
Sbjct: 115 TDPEKGFIDDDKVTF--EVFVQ 134


>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
           Bound To A P53 Peptide
 pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
           Bound To A P53 Peptide
          Length = 161

 Score = 32.0 bits (71), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 21  ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 75

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 76  ESDSTSWSCHAQAVLKIINYRDDE-------KSFSRRISHLFFHKENDWGFSNFMAWSEV 128

Query: 137 INASNGYLVGDTCVFGAEVFVK 158
            +   G++  D   F  EVFV+
Sbjct: 129 TDPEKGFIDDDKVTF--EVFVQ 148


>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
           Complexed With An Ebna1 Peptide
 pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
 pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
 pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
 pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
           Complexed With P53 Peptide 364-367
 pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
           Complexed With P53 Peptide 359-362
 pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
           Complexed With Mdm2 Peptide 147-150
 pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
 pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
          Length = 155

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 19  ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 73

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 74  ESDSTSWSCHAQAVLKIINYRDDE-------KSFSRRISHLFFHKENDWGFSNFMAWSEV 126

Query: 137 INASNGYLVGDTCVFGAEVFVK 158
            +   G++  D   F  EVFV+
Sbjct: 127 TDPEKGFIDDDKVTF--EVFVQ 146


>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
          Length = 158

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 21  ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 75

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 76  ESDSTSWSCHAQAVLKIINYRDDE-------KSFSRRISHLFFHKENDWGFSNFMAWSEV 128

Query: 137 INASNGYLVGDTCVFGAEVFVK 158
            +   G++  D   F  EVFV+
Sbjct: 129 TDPEKGFIDDDKVTF--EVFVQ 148


>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
           Bound To A Mdm2 Peptide
          Length = 159

 Score = 31.6 bits (70), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 21  ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 75

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 76  ESDSTSWSCHAQAVLKIINYRDDE-------KSFSRRISHLFFHKENDWGFSNFMAWSEV 128

Query: 137 INASNGYLVGDTCVFGAEVFVK 158
            +   G++  D   F  EVFV+
Sbjct: 129 TDPEKGFIDDDKVTF--EVFVQ 148


>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
 pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
          Length = 522

 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 27/158 (17%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
           A F   +E FS L E+ +    S         WK++V P    +   +  +  +L     
Sbjct: 31  ATFQFTVERFSRLSESVL----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QCNA 85

Query: 81  SSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGL----KLEWGFDQFIPLEEF 136
            S    W  +    L +++ + DE           RR   L    + +WGF  F+   E 
Sbjct: 86  ESDSTSWSCHAQAVLKIINYRDDEKSF-------SRRISHLFFHKENDWGFSNFMAWSEV 138

Query: 137 INASNGYLVGDTCVFGAEVFVK---------ETKKCTG 165
            +   G++  D   F  EVFV+         ++KK TG
Sbjct: 139 TDPEKGFIDDDKVTF--EVFVQADAPHGVAWDSKKHTG 174


>pdb|1ZL9|A Chain A, Crystal Structure Of A Major Nematode C.Elegans Specific
           Gst (Ce01613)
 pdb|1ZL9|B Chain B, Crystal Structure Of A Major Nematode C.Elegans Specific
           Gst (Ce01613)
          Length = 207

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 253 NQLVSKHYEKKAKCKYLKVSIVVFATG--EWLNTSIALGGWSKF--IELNYLKKAGNGFL 308
           N L  ++ +  ++ +    +++ F  G  E L   I L  + KF    +N+LK +G+GFL
Sbjct: 91  NSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFL 150

Query: 309 VND 311
           V D
Sbjct: 151 VGD 153


>pdb|3JU0|A Chain A, Structure Of The Arm-type Binding Domain Of Hai7
          Integrase
          Length = 108

 Score = 28.5 bits (62), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 32 SLVENDVENYKSLEFD---AGGYKWKLVVYPNGNK 63
          SL ++ V+N KSLE +     G+   L+V+PNG+K
Sbjct: 2  SLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSK 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,020,680
Number of Sequences: 62578
Number of extensions: 413912
Number of successful extensions: 916
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 19
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)