Query 020276
Match_columns 328
No_of_seqs 290 out of 1962
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 99.9 8E-27 1.7E-31 186.4 16.8 130 178-323 2-134 (137)
2 cd03772 MATH_HAUSP Herpesvirus 99.9 1.3E-26 2.8E-31 185.2 16.6 130 20-157 2-132 (137)
3 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1.7E-26 3.6E-31 183.7 15.0 125 22-156 2-134 (134)
4 cd03774 MATH_SPOP Speckle-type 99.9 3.3E-26 7.2E-31 183.3 14.4 132 18-157 2-136 (139)
5 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1E-25 2.2E-30 179.3 14.8 124 180-320 2-134 (134)
6 cd03774 MATH_SPOP Speckle-type 99.9 3.3E-25 7.2E-30 177.5 14.1 129 178-323 4-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 3E-25 6.5E-30 177.8 12.6 134 21-155 1-147 (148)
8 cd03779 MATH_TRAF1 Tumor Necro 99.9 6.4E-25 1.4E-29 175.0 13.1 134 21-155 1-146 (147)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.3E-24 2.8E-29 180.2 14.0 138 16-156 34-184 (186)
10 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.4E-24 3.1E-29 173.0 13.0 133 179-320 1-147 (147)
11 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.5E-24 3.3E-29 173.7 12.8 133 179-320 1-148 (148)
12 cd03773 MATH_TRIM37 Tripartite 99.9 2.4E-24 5.2E-29 171.1 13.1 127 18-156 2-130 (132)
13 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.2E-24 2.7E-29 175.8 11.4 133 21-156 1-147 (147)
14 cd00270 MATH_TRAF_C Tumor Necr 99.9 3E-24 6.4E-29 174.2 12.7 132 21-155 1-148 (149)
15 cd03773 MATH_TRIM37 Tripartite 99.9 3.6E-24 7.9E-29 170.1 13.0 122 178-320 4-130 (132)
16 cd03781 MATH_TRAF4 Tumor Necro 99.9 3.9E-24 8.4E-29 173.8 12.9 133 21-156 1-154 (154)
17 cd00270 MATH_TRAF_C Tumor Necr 99.9 3E-24 6.5E-29 174.2 11.0 131 179-320 1-149 (149)
18 cd03778 MATH_TRAF2 Tumor Necro 99.9 8.8E-24 1.9E-28 170.1 13.0 135 176-320 16-164 (164)
19 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.6E-23 3.5E-28 173.7 14.3 135 176-321 36-185 (186)
20 cd03776 MATH_TRAF6 Tumor Necro 99.9 5.1E-24 1.1E-28 172.1 9.4 131 179-320 1-147 (147)
21 cd03771 MATH_Meprin Meprin fam 99.9 2.6E-23 5.7E-28 168.7 13.3 132 20-155 1-166 (167)
22 cd03781 MATH_TRAF4 Tumor Necro 99.9 2.3E-23 4.9E-28 169.3 12.4 135 179-320 1-154 (154)
23 cd03778 MATH_TRAF2 Tumor Necro 99.9 4E-23 8.6E-28 166.3 13.6 138 14-155 12-163 (164)
24 cd03771 MATH_Meprin Meprin fam 99.9 1.7E-22 3.6E-27 164.0 12.9 138 179-320 2-167 (167)
25 cd00121 MATH MATH (meprin and 99.9 8.7E-22 1.9E-26 154.4 15.6 125 179-320 1-126 (126)
26 cd00121 MATH MATH (meprin and 99.9 5.2E-21 1.1E-25 149.9 15.3 125 21-156 1-126 (126)
27 PF00917 MATH: MATH domain; I 99.8 1.6E-20 3.4E-25 146.2 8.9 116 185-321 1-119 (119)
28 PF00917 MATH: MATH domain; I 99.8 2.6E-20 5.5E-25 145.0 9.7 118 27-157 1-119 (119)
29 cd03783 MATH_Meprin_Alpha Mepr 99.8 1.8E-19 3.9E-24 144.4 11.0 134 20-155 1-166 (167)
30 cd03782 MATH_Meprin_Beta Mepri 99.8 2.3E-19 5E-24 142.9 10.4 132 20-155 1-166 (167)
31 cd03782 MATH_Meprin_Beta Mepri 99.8 2.4E-19 5.2E-24 142.8 10.1 138 179-320 2-167 (167)
32 cd03783 MATH_Meprin_Alpha Mepr 99.8 6.6E-19 1.4E-23 141.2 9.9 138 180-320 3-167 (167)
33 smart00061 MATH meprin and TRA 99.7 1.2E-16 2.5E-21 119.1 11.6 94 23-131 2-95 (95)
34 smart00061 MATH meprin and TRA 99.7 2.1E-16 4.5E-21 117.7 11.0 93 181-295 2-95 (95)
35 COG5077 Ubiquitin carboxyl-ter 99.5 1.2E-14 2.5E-19 137.9 6.8 133 17-160 35-174 (1089)
36 COG5077 Ubiquitin carboxyl-ter 99.5 1.2E-13 2.6E-18 131.2 7.2 132 177-326 37-176 (1089)
37 KOG1987 Speckle-type POZ prote 99.1 7.3E-11 1.6E-15 106.6 4.4 192 24-233 7-214 (297)
38 KOG1987 Speckle-type POZ prote 98.5 1.2E-06 2.6E-11 79.2 12.5 121 181-326 6-130 (297)
39 KOG1863 Ubiquitin carboxyl-ter 98.1 2.3E-06 4.9E-11 89.6 5.1 131 178-327 26-157 (1093)
40 KOG1863 Ubiquitin carboxyl-ter 98.1 4.4E-06 9.5E-11 87.4 5.2 131 20-162 26-157 (1093)
41 KOG0297 TNF receptor-associate 97.2 0.00022 4.8E-09 66.6 3.4 84 16-100 275-365 (391)
42 KOG0297 TNF receptor-associate 97.1 0.00036 7.8E-09 65.2 3.3 79 176-254 277-365 (391)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=8e-27 Score=186.40 Aligned_cols=130 Identities=18% Similarity=0.309 Sum_probs=109.0
Q ss_pred CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276 178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGV--ASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL 255 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~--~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~ 255 (328)
+++|+|+|.|||.+ ++.+.|+.|.+||++|+|++||+|+.. +..++||+||+|.+... ...|++.|+|+|+|+||+
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEEcCC
Confidence 68999999999998 578999999999999999999999654 23479999999976533 348999999999999998
Q ss_pred CCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEe
Q 020276 256 VSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG 323 (328)
Q Consensus 256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~ 323 (328)
++. ...+... +.|......|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus 80 ~~~~~~~~~~~--------------~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRIS--------------HLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeee--------------eEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 533 2222332 67866677999999999999987778999999999999999865
No 2
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=1.3e-26 Score=185.21 Aligned_cols=130 Identities=22% Similarity=0.377 Sum_probs=109.6
Q ss_pred CcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEE
Q 020276 20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNE-NVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVL 98 (328)
Q Consensus 20 ~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~-~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~ 98 (328)
.++|+|+|+|||.+ ++.++|+.|.+||++|+|.+||+|.... +..+||||||.|.+.. ....|++.|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEE
Confidence 58999999999998 4789999999999999999999996521 3358999999997653 3347999999999999
Q ss_pred eCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 99 DQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 99 n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
|++++....... ..+.|......|||.+||+|++|+++++|||+||+|+|+|+|+|
T Consensus 77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 998644433333 45678766689999999999999887899999999999999998
No 3
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=1.7e-26 Score=183.73 Aligned_cols=125 Identities=24% Similarity=0.538 Sum_probs=106.9
Q ss_pred EEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEE
Q 020276 22 HFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS----LGLGWEVYVIFRLFV 97 (328)
Q Consensus 22 ~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~----~~~~w~~~~~~~~~l 97 (328)
+|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|+. + .+|+||||.+...+. .+.+|.+.|+|+|+|
T Consensus 2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l 74 (134)
T cd03775 2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI 74 (134)
T ss_pred cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence 599999999997 57899999999999999999999976 2 789999999976543 256899999999999
Q ss_pred EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccC----CCCeeeCCEEEEEEEEE
Q 020276 98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINA----SNGYLVGDTCVFGAEVF 156 (328)
Q Consensus 98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~~~l~dd~l~i~~~v~ 156 (328)
+||.++....... ..+.|+....+|||.+||++++|++| ++|||+||+|+|+|.|+
T Consensus 75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9998665444333 57889877789999999999999954 57999999999999874
No 4
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.94 E-value=3.3e-26 Score=183.34 Aligned_cols=132 Identities=33% Similarity=0.484 Sum_probs=110.2
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 020276 18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFR 94 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~ 94 (328)
+...+|+|+|+|||.+.+..++.+.|++|.+||+ +|+|.+||+|.. ++..+|+||||++...+ .+++.|+|+
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~ 76 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK 76 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence 4678999999999998654577999999999995 999999999986 45678999999997643 367999999
Q ss_pred EEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 95 LFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 95 ~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
|.|+|+.+.+....... ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|
T Consensus 77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 99999987654332221 3466765 478999999999999877789999999999999998
No 5
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=1e-25 Score=179.25 Aligned_cols=124 Identities=29% Similarity=0.446 Sum_probs=104.1
Q ss_pred eEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEcCC
Q 020276 180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSST----ITGGSKIYVHFTLRIRNQL 255 (328)
Q Consensus 180 ~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~----~~~~w~~~~~~~~~l~~~~ 255 (328)
+|+|+|.|||.+. +.+.|++|.+||++|+|++||+|+.. .+|+|+||++.+... .+.+|++.|+|+|.|+||.
T Consensus 2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 6999999999974 67999999999999999999999865 579999999976432 2568999999999999997
Q ss_pred CCcee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccC----CCCeEECCEEEEEEEEE
Q 020276 256 VSKHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKA----GNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 256 ~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~gfl~~D~l~i~~~V~ 320 (328)
++... ..... +.|.....+|||.+||++++|+++ ++|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~--------------~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAH--------------HRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccce--------------eEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 65432 22222 889877789999999999999954 57999999999999873
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.93 E-value=3.3e-25 Score=177.54 Aligned_cols=129 Identities=28% Similarity=0.442 Sum_probs=106.3
Q ss_pred CceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276 178 NYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI 251 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l 251 (328)
..+|+|+|.+||++. ++.+.|++|.+||+ +|+|++||+|+..+..+|+|+||++++. ..+++.|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEEEEEEEE
Confidence 578999999999874 56899999999984 9999999999876667899999999753 2467999999999
Q ss_pred EcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEe
Q 020276 252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG 323 (328)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~ 323 (328)
+||+++........ ..+.|. ...+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 80 ~n~~~~~~~~~~~~------------~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeeccc------------CcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99987643211111 125675 457899999999999987668999999999999999986
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=3e-25 Score=177.76 Aligned_cols=134 Identities=22% Similarity=0.308 Sum_probs=107.2
Q ss_pred cEEEEEEcCcccccc--cCCC--eEEcCcE--EecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276 21 AHFLLKIEAFSSLVE--NDVE--NYKSLEF--DAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF 93 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~--~~~~--~~~S~~f--~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~ 93 (328)
|.|.|+|++|+.+++ ..+. .++|++| .++||+|+|++||||.+ .+.++|+||||++++++.+ ...|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 689999999999875 2455 7999999 89999999999999988 5568899999999987543 4579999999
Q ss_pred EEEEEeCCCCceeEe-eccc-CceeeecCC----CCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276 94 RLFVLDQKKDEFLIL-QDAM-GKQRRFHGL----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV 155 (328)
Q Consensus 94 ~~~l~n~~~~~~~~~-~~~~-~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v 155 (328)
+|+|+||.+.+.... .-.. ...+.|... +..||+.+||++++|+..+.+||+||++.|+|.|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999976543211 0000 023568655 4579999999999998434599999999999987
No 8
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=6.4e-25 Score=174.96 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=104.3
Q ss_pred cEEEEEEcCcccccc-c---CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276 21 AHFLLKIEAFSSLVE-N---DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF 93 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~-~---~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~ 93 (328)
|.+.|+|+||+++.+ . ....++||+|..+ ||+|+|++||||.+ .+.++|+||||++++++.+ ..+|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 689999999998766 2 2347999999876 99999999999988 4568899999999986432 4579999999
Q ss_pred EEEEEeCCCCceeEeeccc-Cceeeec----CCCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276 94 RLFVLDQKKDEFLILQDAM-GKQRRFH----GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV 155 (328)
Q Consensus 94 ~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v 155 (328)
+|+|+||.+.+........ ...+.|. ..+..||+.+||++++|+....+||+||++.|+|+|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999999764432111110 0135686 334579999999999998322499999999999998
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.92 E-value=1.3e-24 Score=180.20 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=108.7
Q ss_pred ccCCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276 16 SHVPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE 88 (328)
Q Consensus 16 ~~~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~ 88 (328)
....+|.|.|+|.+|+.+++ ..+. .++|++|.+| ||+|+|++||||.+ .+.++|+||||++++++.+ ...|+
T Consensus 34 ~~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP 112 (186)
T cd03777 34 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP 112 (186)
T ss_pred ccccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCc
Confidence 45568999999999999865 2344 7999999999 99999999999988 4568899999999987532 45799
Q ss_pred EEEEEEEEEEeCCCCceeEeec--ccCceeeecC-C---CCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276 89 VYVIFRLFVLDQKKDEFLILQD--AMGKQRRFHG-L---KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF 156 (328)
Q Consensus 89 ~~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~ 156 (328)
+.++++|+|+||.+........ .......|.. . +..||+.+||++++|+ +++||+||+|.|+|.|.
T Consensus 113 ~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 113 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred eeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 9999999999997532211100 0002345752 2 3579999999999999 68899999999999885
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.92 E-value=1.4e-24 Score=172.95 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=104.9
Q ss_pred ceEEEEEcccccCC-----C--ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276 179 YKYVWKIENFSKLP-----D--KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT 248 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-----~--~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~ 248 (328)
|++.|+|.||+++. + ..++||.|..+ ||+|+|++||||.+.+.++|+|+||+++++. +..+.|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57999999999765 1 36899999987 9999999999999887788999999998763 4446899999999
Q ss_pred EEEEcCCCCceeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 249 LRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
|.|++|.+..+...... +. ...+.|. ..+.+||+++||++++|+...++||+||+++|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~-------~~--~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFR-------PD--LSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeec-------CC--cccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999976543211111 00 0125575 3456899999999999987445899999999999984
No 11
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.92 E-value=1.5e-24 Score=173.68 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=105.6
Q ss_pred ceEEEEEcccccCC-----Cc--eeecCce--EeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276 179 YKYVWKIENFSKLP-----DK--IYESEVF--VAGDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT 248 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-----~~--~~~S~~f--~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~ 248 (328)
+++.|+|.+|++++ +. .+.|++| .++||+|+|++||||.+.+.++|||+||++++++ +....|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57999999999986 23 7999999 8999999999999999887888999999998763 3347899999999
Q ss_pred EEEEcCCCCcee-eeeeeeeceeeeeeeeccceeccCC----cCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 249 LRIRNQLVSKHY-EKKAKCKYLKVSIVVFATGEWLNTS----IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 249 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
|.|++|.+.... ..... .+| ..+.|... +.+||+++||++++|+...++||+||+|+|+|.|.
T Consensus 81 fsLlDq~~~~~~~~~~~~-----~~~----~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 81 LMLLDQSGKKNHIMETFK-----ADP----NSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEECCCCCCCCcceeee-----cCC----ccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999754311 11110 001 12557544 56899999999999987446999999999999873
No 12
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=2.4e-24 Score=171.15 Aligned_cols=127 Identities=27% Similarity=0.449 Sum_probs=104.6
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276 18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFV 97 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l 97 (328)
+..++++|+|+|||.+.+ .++.++|++|.+|||+|+|.+||+|.. ++..+|||+||.+..+. .|.+.++|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l 75 (132)
T cd03773 2 PPYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM 75 (132)
T ss_pred CCCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence 356789999999999854 467899999999999999999999987 45678999999987642 367889999999
Q ss_pred EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeC--CEEEEEEEEE
Q 020276 98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVG--DTCVFGAEVF 156 (328)
Q Consensus 98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~d--d~l~i~~~v~ 156 (328)
+||.++....... ..+.|.. ..+|||.+||++++|. ++|||.| |+|+|+|.|+
T Consensus 76 lnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 76 VHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred EcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 9995443333333 4567865 4679999999999998 5799999 9999999985
No 13
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.92 E-value=1.2e-24 Score=175.77 Aligned_cols=133 Identities=21% Similarity=0.298 Sum_probs=104.3
Q ss_pred cEEEEEEcCcccccc--cCCC--eEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCCeEEEEE
Q 020276 21 AHFLLKIEAFSSLVE--NDVE--NYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS-LGLGWEVYVIF 93 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~~ 93 (328)
|.|.|+|.+||.+++ ..++ .++|++|.+ |||+|+|++||+|.. ++..+||||||++.+++. ...+|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999998655 2455 388999985 799999999999987 456789999999988654 25679999999
Q ss_pred EEEEEeCCCCceeEee--cccCceeeecC-----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276 94 RLFVLDQKKDEFLILQ--DAMGKQRRFHG-----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF 156 (328)
Q Consensus 94 ~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~ 156 (328)
+|+|+||.++...... ........|.. ....|||.+||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 9999999864332110 00002345763 23579999999999998 57899999999999984
No 14
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.91 E-value=3e-24 Score=174.21 Aligned_cols=132 Identities=27% Similarity=0.420 Sum_probs=104.2
Q ss_pred cEEEEEEcCcccccc----cCCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276 21 AHFLLKIEAFSSLVE----NDVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF 93 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~----~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~ 93 (328)
|+|+|+|++||.+++ ..++.++|+.|.+| ||+|+|++||+|.. ++..+||||||++.++..+ ..+|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 689999999999865 24578999999999 99999999999986 4456899999999887543 5679999999
Q ss_pred EEEEEeCCCC--ceeEeec--ccCceeeec-----CCCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276 94 RLFVLDQKKD--EFLILQD--AMGKQRRFH-----GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV 155 (328)
Q Consensus 94 ~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v 155 (328)
+|.|+||.++ ....... .......|. ....+|||.+||++++|+ +++||+||+|+|+|+|
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v 148 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence 9999999874 1211100 000123454 134789999999999998 4689999999999998
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.91 E-value=3.6e-24 Score=170.09 Aligned_cols=122 Identities=21% Similarity=0.384 Sum_probs=101.3
Q ss_pred CceEEEEEcccccCC--CceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276 178 NYKYVWKIENFSKLP--DKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL 255 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~--~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~ 255 (328)
..+++|+|.+||.+. ++.+.|+.|.+||++|+|++||+|+..+.++|||+||++.++ ..|.+.++|+|+|+||.
T Consensus 4 ~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq~ 79 (132)
T cd03773 4 YDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVHQA 79 (132)
T ss_pred CcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEcCC
Confidence 678999999999985 468999999999999999999999887667899999998754 24678899999999995
Q ss_pred CCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEEC--CEEEEEEEEE
Q 020276 256 VSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVN--DVCIVEAEVP 320 (328)
Q Consensus 256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~--D~l~i~~~V~ 320 (328)
++. +...... +.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 80 ~~~~~~~~~~~--------------~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 80 NPTKNIKREFA--------------SDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCccceEEecc--------------ccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 433 2222222 66754 56799999999999986 699999 9999999986
No 16
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.91 E-value=3.9e-24 Score=173.80 Aligned_cols=133 Identities=25% Similarity=0.369 Sum_probs=105.0
Q ss_pred cEEEEEEcCcccccc---c-CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276 21 AHFLLKIEAFSSLVE---N-DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF 93 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~---~-~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~ 93 (328)
|.|.|+|++|+.+++ . .++.+.|++|.+| ||+|+|++||||.. ++..+|+|+||++++++.+ ...|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 689999999999875 2 3578999999999 99999999999987 5568899999999986543 2589999999
Q ss_pred EEEEEeCCCCc--e--eEeec--ccCceeeecC--------CCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276 94 RLFVLDQKKDE--F--LILQD--AMGKQRRFHG--------LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF 156 (328)
Q Consensus 94 ~~~l~n~~~~~--~--~~~~~--~~~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~ 156 (328)
+|+|+||.+.. . ..... .......|+. .+..||+.+||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence 99999997641 1 11000 0002344553 33569999999999999 68999999999999983
No 17
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.91 E-value=3e-24 Score=174.19 Aligned_cols=131 Identities=20% Similarity=0.323 Sum_probs=103.0
Q ss_pred ceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276 179 YKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT 248 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~ 248 (328)
++|+|+|.+|++++ ++.+.|+.|.+| |++|+|++||+|...+.++|||+||++.++. +....|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 57999999999974 258899999999 9999999999998766678999999998764 3346899999999
Q ss_pred EEEEcCCCC---ceeeeeeeeeceeeeeeeeccceecc-----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 249 LRIRNQLVS---KHYEKKAKCKYLKVSIVVFATGEWLN-----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 249 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
|.|+||.++ .+...... +. ...+.|. ....+|||.+||++++|++ +|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~-------~~--~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFM-------PD--PNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEE-------cC--CchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 12111110 00 0113453 1457899999999999987 5999999999999984
No 18
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.91 E-value=8.8e-24 Score=170.11 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=108.6
Q ss_pred cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~ 245 (328)
+.+++|+|+|+||+++.. ..++||.|..+ ||+|+|++||||++.+.++|||+|+++++++.++ +.|+++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 348999999999998762 36889999875 8999999999999988889999999999996544 8999999
Q ss_pred EEEEEEEcCCCCceeeeeeeeeceeeeeeeeccceec----cCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWL----NTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F----~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
+++|.|+||++.++...... |.. ....| +..+.+|||+.|+++++|+.. +|||+||+|.|+|.|.
T Consensus 96 ~itl~llDQ~~r~hi~~~~~-------pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFR-------PDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD 164 (164)
T ss_pred EEEEEEECCCCCCcceeEEE-------cCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence 99999999987665432221 110 11234 234568999999999999864 5999999999999873
No 19
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.91 E-value=1.6e-23 Score=173.68 Aligned_cols=135 Identities=18% Similarity=0.279 Sum_probs=107.1
Q ss_pred cCCceEEEEEcccccCC-----Cc--eeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLP-----DK--IYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~ 245 (328)
..+|.|.|+|.+|++.+ ++ .+.|++|.++ ||+|+|++||||.+.+.++|||+||++++++ +....|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 34799999999999875 23 6999999999 9999999999999887788999999999873 4456899999
Q ss_pred EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceecc-CC---cCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLN-TS---IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~-~~---~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
+++|.|++|.+.. +.... +.|.. ....|. .. +.+||+++||++++|+. ++||+||+|+|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~-------~~p~p--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDA-------FKPDP--NSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccce-------eccCC--ccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 9999999997421 21111 11110 114465 22 55899999999999987 6999999999999986
Q ss_pred E
Q 020276 321 V 321 (328)
Q Consensus 321 i 321 (328)
.
T Consensus 185 ~ 185 (186)
T cd03777 185 T 185 (186)
T ss_pred c
Confidence 3
No 20
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.90 E-value=5.1e-24 Score=172.15 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=101.5
Q ss_pred ceEEEEEcccccCC-----Cc--eeecCceEe--CCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276 179 YKYVWKIENFSKLP-----DK--IYESEVFVA--GDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT 248 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-----~~--~~~S~~f~~--~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~ 248 (328)
++|+|+|.+||+++ ++ .+.|+.|.+ +|++|+|++||+|...+..+|||+||+++++. +....|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999754 23 488999985 79999999999999877778999999998764 2346799999999
Q ss_pred EEEEcCCCCce-eeeeeeeeceeeeeeeeccceeccC-----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 249 LRIRNQLVSKH-YEKKAKCKYLKVSIVVFATGEWLNT-----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 249 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
|.|++|.++.. ...... +. ...+.|.. .+.+|||.+||++++|++ ++||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~-------~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMM-------SK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEE-------cC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 99999986432 111110 00 01145652 346899999999999987 5899999999999984
No 21
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.90 E-value=2.6e-23 Score=168.68 Aligned_cols=132 Identities=20% Similarity=0.320 Sum_probs=101.7
Q ss_pred CcEEEEEEcCcccccc--cCCCeEEcCcE-EecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEE
Q 020276 20 PAHFLLKIEAFSSLVE--NDVENYKSLEF-DAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE-VYVIFR 94 (328)
Q Consensus 20 ~~~~~w~I~nfs~~~~--~~~~~~~S~~f-~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~-~~~~~~ 94 (328)
+..|.|+|++||.+++ ..++.++|++| .+|||+|+|++||+|.. + ..+||||||++++++.+ ..+|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 4689999999999963 35778999998 99999999999999988 4 67899999999987543 67899 589999
Q ss_pred EEEEeCCCCce---eE----eeccc--C---ceeeecC-----------------CCCCCCccccccccccccCCCCeee
Q 020276 95 LFVLDQKKDEF---LI----LQDAM--G---KQRRFHG-----------------LKLEWGFDQFIPLEEFINASNGYLV 145 (328)
Q Consensus 95 ~~l~n~~~~~~---~~----~~~~~--~---~~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~~~l~ 145 (328)
|+|+||.+... +. ..+.. . ....|.. .+.+|||.+||++++|. +.+||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence 99999974211 11 11100 0 0011322 22479999999999999 577999
Q ss_pred CCEEEEEEEE
Q 020276 146 GDTCVFGAEV 155 (328)
Q Consensus 146 dd~l~i~~~v 155 (328)
||+|.|++++
T Consensus 157 ~dtl~i~~~~ 166 (167)
T cd03771 157 GDDLIILLDF 166 (167)
T ss_pred CCEEEEEEEe
Confidence 9999999987
No 22
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.90 E-value=2.3e-23 Score=169.29 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=103.2
Q ss_pred ceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 020276 179 YKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSSTI-TGGSKIYVHFT 248 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~-~~~w~~~~~~~ 248 (328)
+.|.|+|.+|+.++ +..+.|+.|.+| |++|+|++||+|...+.++|+|+||++++++.. ...|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999875 257999999999 999999999999988778899999999986432 35899999999
Q ss_pred EEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccC--------CcCCCCcccceeccccccCCCCeEECCEEEEEEEE
Q 020276 249 LRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNT--------SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEV 319 (328)
Q Consensus 249 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V 319 (328)
|+|++|.++. ....... ..++.. .....|.. .+.+||+.+||++++|+. ++||+||+|+|+|+|
T Consensus 81 ~~llDq~~~~~~~~~~~~-~~~~~~----~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHIT-ETFTPD----PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceE-EEEEcC----CchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEe
Confidence 9999998641 1100000 000000 01244542 446799999999999987 689999999999998
Q ss_pred E
Q 020276 320 P 320 (328)
Q Consensus 320 ~ 320 (328)
+
T Consensus 154 ~ 154 (154)
T cd03781 154 E 154 (154)
T ss_pred C
Confidence 4
No 23
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.90 E-value=4e-23 Score=166.32 Aligned_cols=138 Identities=24% Similarity=0.386 Sum_probs=108.3
Q ss_pred eeccCCCcEEEEEEcCccccccc--C--CCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CC
Q 020276 14 SISHVPPAHFLLKIEAFSSLVEN--D--VENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LG 86 (328)
Q Consensus 14 ~~~~~~~~~~~w~I~nfs~~~~~--~--~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~ 86 (328)
.......|.|.|+|+||+++.+. . ...++||+|..+ ||+|+|++||||++ .+.+.||||||++++++.++ .+
T Consensus 12 l~~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~ 90 (164)
T cd03778 12 XEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLR 90 (164)
T ss_pred ccccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccC
Confidence 33456689999999999998762 2 347999999754 89999999999987 45678999999999998775 89
Q ss_pred CeEEEEEEEEEEeCCCCceeEe---ecccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276 87 WEVYVIFRLFVLDQKKDEFLIL---QDAMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV 155 (328)
Q Consensus 87 w~~~~~~~~~l~n~~~~~~~~~---~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v 155 (328)
||+..+++|+|+||++...... .+. ....|.+ .+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus 91 WPf~~~itl~llDQ~~r~hi~~~~~pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 91 WPFNQKVTLMLLDQNNREHVIDAFRPDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred CceeeEEEEEEECCCCCCcceeEEEcCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 9999999999999975333211 010 1113532 2456999999999999842 699999999999987
No 24
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.89 E-value=1.7e-22 Score=164.01 Aligned_cols=138 Identities=18% Similarity=0.256 Sum_probs=102.2
Q ss_pred ceEEEEEcccccCC-----CceeecCce-EeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCe-EEEEEEEE
Q 020276 179 YKYVWKIENFSKLP-----DKIYESEVF-VAGDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSK-IYVHFTLR 250 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~-~~~~~~~~ 250 (328)
.+|+|+|.+||+++ +..+.|++| .++|++|+|++||+|+.. .++||||||++++++ +..+.|+ +.++++|+
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 47999999999985 247999998 899999999999999987 788999999998763 3457899 58999999
Q ss_pred EEcCCCCceeeeeeeeeceeeeeee---------eccc----eeccC-------CcCCCCcccceeccccccCCCCeEEC
Q 020276 251 IRNQLVSKHYEKKAKCKYLKVSIVV---------FATG----EWLNT-------SIALGGWSKFIELNYLKKAGNGFLVN 310 (328)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~F~~-------~~~~~G~~~fi~~~~L~~~~~gfl~~ 310 (328)
|++|..... .+....+..++.|.. ++.. ..+.. .+.+|||++||++++|+. ++||+|
T Consensus 81 LlDQ~~~~~-~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 81 LLDQDPDIQ-QRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EECCCCccc-ccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 999963211 111111122333310 1111 11221 446899999999999998 579999
Q ss_pred CEEEEEEEEE
Q 020276 311 DVCIVEAEVP 320 (328)
Q Consensus 311 D~l~i~~~V~ 320 (328)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999874
No 25
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.88 E-value=8.7e-22 Score=154.40 Aligned_cols=125 Identities=34% Similarity=0.473 Sum_probs=104.2
Q ss_pred ceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCc
Q 020276 179 YKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSK 258 (328)
Q Consensus 179 ~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~ 258 (328)
++|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..+|+|+||+|.........|++.++++|.|++|++++
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 47999999999956678999999999999999999999865 46799999999876544568999999999999998555
Q ss_pred eeeeeeeeeceeeeeeeeccceecc-CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 259 HYEKKAKCKYLKVSIVVFATGEWLN-TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
...+... +.|. ....+|||.+||++++|+++ ++++||+|+|+|+|.
T Consensus 80 ~~~~~~~--------------~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFT--------------HVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEecc--------------CCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 4444433 4443 46789999999999999984 449999999999984
No 26
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.87 E-value=5.2e-21 Score=149.94 Aligned_cols=125 Identities=33% Similarity=0.535 Sum_probs=101.9
Q ss_pred cEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 020276 21 AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQ 100 (328)
Q Consensus 21 ~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~ 100 (328)
++|+|+|.+|+.. .++.++|+.|.++|+.|+|.+||+|.. . ..+||||||+|.........|++.++|+|+|+|+
T Consensus 1 ~~~~~~i~~~~~~---~~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (126)
T cd00121 1 GKHTWKIVNFSEL---EGESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ 75 (126)
T ss_pred CEEEEEECCCCCC---CCcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence 4799999999993 368999999999999999999999976 2 5789999999988765456799999999999999
Q ss_pred CCCceeEeecccCceeeec-CCCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276 101 KKDEFLILQDAMGKQRRFH-GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF 156 (328)
Q Consensus 101 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~ 156 (328)
++.+..... ..+.|. ....+|||.+||++++|++ ..++.||+|+|+|+|.
T Consensus 76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 844433222 233442 4468999999999999993 4449999999999983
No 27
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=1.6e-20 Score=146.20 Aligned_cols=116 Identities=32% Similarity=0.474 Sum_probs=94.1
Q ss_pred EcccccCC-C-ceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEcCCCCceee
Q 020276 185 IENFSKLP-D-KIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVHFTLRIRNQLVSKHYE 261 (328)
Q Consensus 185 I~nfs~~~-~-~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~ 261 (328)
|+|||++. + ....|+.|.++|++|+|.+||+|+ ++++++||+|....... ..|++.++++|+|+++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 68999987 3 334458899999999999999997 46999999998875433 68999999999999998876322
Q ss_pred eeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEE
Q 020276 262 KKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV 321 (328)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i 321 (328)
.... +.|. ...+|||.+||++++|+++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~--------------~~F~-~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKS--------------HSFN-NPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEC--------------EEEC-TTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeee--------------eEEe-eecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 1112 6786 4488999999999999985 4899999999999987
No 28
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=2.6e-20 Score=145.00 Aligned_cols=118 Identities=34% Similarity=0.587 Sum_probs=96.6
Q ss_pred EcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCce
Q 020276 27 IEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEVYVIFRLFVLDQKKDEF 105 (328)
Q Consensus 27 I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~~~~~l~n~~~~~~ 105 (328)
|+|||++.+ .+..+.|+.|.++|++|+|.+||+|+ .++||+||+|..+.... .+|++.+++++.|+++.++..
T Consensus 1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 74 (119)
T PF00917_consen 1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI 74 (119)
T ss_dssp ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence 789999973 23344558899999999999999975 57999999999986553 689999999999999988874
Q ss_pred eEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 106 LILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 106 ~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
.... ..+.|+.. .+|||.+||++++|.++ .|+.||+|+|+|+|+|
T Consensus 75 ~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 75 SKRI----KSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEE----ECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeee----eeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 3321 23788775 88999999999999943 3999999999999986
No 29
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.81 E-value=1.8e-19 Score=144.43 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=102.9
Q ss_pred CcEEEEEEcCccccccc--CCCeEEcCcEEec-CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE-EEEEE
Q 020276 20 PAHFLLKIEAFSSLVEN--DVENYKSLEFDAG-GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV-YVIFR 94 (328)
Q Consensus 20 ~~~~~w~I~nfs~~~~~--~~~~~~S~~f~~g-g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~~~~ 94 (328)
+..+.|+|.||+++.+. .+..++||+|..+ ||+.+|++||+|+...+.+.|||||+++++++.+ ..+||+ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 35689999999998762 5678999999875 9999999999998633567899999999999765 678995 56999
Q ss_pred EEEEeCCCCce---eE----eecccCc------eeeecCC--------------CCCCCccccccccccccCCCCeeeCC
Q 020276 95 LFVLDQKKDEF---LI----LQDAMGK------QRRFHGL--------------KLEWGFDQFIPLEEFINASNGYLVGD 147 (328)
Q Consensus 95 ~~l~n~~~~~~---~~----~~~~~~~------~~~F~~~--------------~~~~G~~~fi~~~~L~~~~~~~l~dd 147 (328)
|+|+||++... +. ..+.... ...|..+ +.++||.+||++++|. +++||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCC
Confidence 99999975221 11 1110000 1124432 3579999999999999 68999999
Q ss_pred EEEEEEEE
Q 020276 148 TCVFGAEV 155 (328)
Q Consensus 148 ~l~i~~~v 155 (328)
+|.|.+++
T Consensus 159 tlfI~~~~ 166 (167)
T cd03783 159 DLIIFVDF 166 (167)
T ss_pred eEEEEEec
Confidence 99999876
No 30
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.80 E-value=2.3e-19 Score=142.91 Aligned_cols=132 Identities=18% Similarity=0.346 Sum_probs=102.7
Q ss_pred CcEEEEEEcCccccccc--CCCeEEcCcEEe-cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE-EEEE
Q 020276 20 PAHFLLKIEAFSSLVEN--DVENYKSLEFDA-GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY-VIFR 94 (328)
Q Consensus 20 ~~~~~w~I~nfs~~~~~--~~~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~-~~~~ 94 (328)
+..+.|+|+||+++.+. .+..++||+|.. .||+.++++||||++ .+ ++|||||+++++++.+ ..+||+. .+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 35799999999998763 467899999964 599999999999988 33 6899999999999765 6789999 8999
Q ss_pred EEEEeCCC---CceeEee------cccCc-eeee--cCC-----------------CCCCCccccccccccccCCCCeee
Q 020276 95 LFVLDQKK---DEFLILQ------DAMGK-QRRF--HGL-----------------KLEWGFDQFIPLEEFINASNGYLV 145 (328)
Q Consensus 95 ~~l~n~~~---~~~~~~~------~~~~~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~~~l~ 145 (328)
|+|+||++ .+.+... +.... ...| ..+ +.++||+.||++++|. ++.||+
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik 156 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK 156 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence 99999975 2222111 00000 1134 322 4679999999999999 688999
Q ss_pred CCEEEEEEEE
Q 020276 146 GDTCVFGAEV 155 (328)
Q Consensus 146 dd~l~i~~~v 155 (328)
||++.|-+++
T Consensus 157 dD~ifi~~~~ 166 (167)
T cd03782 157 GDDVIFLLTM 166 (167)
T ss_pred CCeEEEEEec
Confidence 9999998876
No 31
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.80 E-value=2.4e-19 Score=142.80 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=102.8
Q ss_pred ceEEEEEcccccCC-----CceeecCceEeC-CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEE-EEEEEE
Q 020276 179 YKYVWKIENFSKLP-----DKIYESEVFVAG-DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIY-VHFTLR 250 (328)
Q Consensus 179 ~~~~w~I~nfs~~~-----~~~~~S~~f~~~-g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~-~~~~~~ 250 (328)
..++|+|+||+++. ...++||.|... ||+.++.+||||++.+ ++|||+|+++++++ +..+.||+. -+++|.
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM 80 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence 36899999999876 257899988754 9999999999999876 67999999999984 446899999 899999
Q ss_pred EEcCCCCceeeeeeeeeceeeeeeeecc-ceec--c-----------------CCcCCCCcccceeccccccCCCCeEEC
Q 020276 251 IRNQLVSKHYEKKAKCKYLKVSIVVFAT-GEWL--N-----------------TSIALGGWSKFIELNYLKKAGNGFLVN 310 (328)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~F--~-----------------~~~~~~G~~~fi~~~~L~~~~~gfl~~ 310 (328)
|++|++... .+....+++++.|..... +..| . .++.++||+.||++++|+. +.||+|
T Consensus 81 LlDQ~~d~~-~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd 157 (167)
T cd03782 81 LLDQHPDIR-QRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG 157 (167)
T ss_pred EEcCCCchh-hccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence 999964211 111111233344321111 1122 1 1268999999999999998 689999
Q ss_pred CEEEEEEEEE
Q 020276 311 DVCIVEAEVP 320 (328)
Q Consensus 311 D~l~i~~~V~ 320 (328)
|++.|-++++
T Consensus 158 D~ifi~~~~e 167 (167)
T cd03782 158 DDVIFLLTME 167 (167)
T ss_pred CeEEEEEecC
Confidence 9999988763
No 32
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.79 E-value=6.6e-19 Score=141.18 Aligned_cols=138 Identities=18% Similarity=0.262 Sum_probs=100.6
Q ss_pred eEEEEEcccccCC-----CceeecCceEeC-CeeEEEEEecCCCCC-CCCCeEEEEEEecCCC-CCCCCCeE-EEEEEEE
Q 020276 180 KYVWKIENFSKLP-----DKIYESEVFVAG-DQKWKILLFPKGLGV-ASGSHISMYLELTDSS-TITGGSKI-YVHFTLR 250 (328)
Q Consensus 180 ~~~w~I~nfs~~~-----~~~~~S~~f~~~-g~~W~i~~yp~G~~~-~~~~~lsvyL~~~~~~-~~~~~w~~-~~~~~~~ 250 (328)
.++|+|+||+++. ...++||.|... ||+.+|++||+|++. +.++|+|+|+++++++ +..+.|++ .-+++|.
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~ 82 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT 82 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence 5899999999876 257999999875 999999999999874 5678999999999984 44689994 6799999
Q ss_pred EEcCCCCceeeeeeeeeceeeeee----eeccceecc--------------CCcCCCCcccceeccccccCCCCeEECCE
Q 020276 251 IRNQLVSKHYEKKAKCKYLKVSIV----VFATGEWLN--------------TSIALGGWSKFIELNYLKKAGNGFLVNDV 312 (328)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~F~--------------~~~~~~G~~~fi~~~~L~~~~~gfl~~D~ 312 (328)
|++|+.... .+....+..++.+. .+.....|. ..+.++||+.||++++|+. ++||+||+
T Consensus 83 llDQ~~~~~-~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt 159 (167)
T cd03783 83 VLDQDPDVR-LRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD 159 (167)
T ss_pred EEcCCcchh-hccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence 999964211 11111011222221 000001122 2456899999999999998 79999999
Q ss_pred EEEEEEEE
Q 020276 313 CIVEAEVP 320 (328)
Q Consensus 313 l~i~~~V~ 320 (328)
|.|.++++
T Consensus 160 lfI~~~~~ 167 (167)
T cd03783 160 LIIFVDFE 167 (167)
T ss_pred EEEEEecC
Confidence 99999874
No 33
>smart00061 MATH meprin and TRAF homology.
Probab=99.71 E-value=1.2e-16 Score=119.08 Aligned_cols=94 Identities=22% Similarity=0.398 Sum_probs=79.6
Q ss_pred EEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCC
Q 020276 23 FLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKK 102 (328)
Q Consensus 23 ~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~~~ 102 (328)
++|.|+||+.+. .++.++|++|.++|++|+|.+||+ .+|||+||.|.+....+.+|++.|+++|+|+|+++
T Consensus 2 ~~~~~~~~~~~~--~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~ 72 (95)
T smart00061 2 LSHTFKNVSRLE--EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG 72 (95)
T ss_pred ceeEEEchhhcc--cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence 579999999985 367899999999999999999998 47999999998876555589999999999999987
Q ss_pred CceeEeecccCceeeecCCCCCCCccccc
Q 020276 103 DEFLILQDAMGKQRRFHGLKLEWGFDQFI 131 (328)
Q Consensus 103 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi 131 (328)
+.... . ..+.|.. ..+|||.+||
T Consensus 73 ~~~~~--~---~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 73 KSLSK--K---DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CEEee--e---eeEEEcC-CCccceeeEC
Confidence 65522 2 5678886 6889999886
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.70 E-value=2.1e-16 Score=117.72 Aligned_cols=93 Identities=25% Similarity=0.309 Sum_probs=77.5
Q ss_pred EEEEEcccccCC-CceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCce
Q 020276 181 YVWKIENFSKLP-DKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKH 259 (328)
Q Consensus 181 ~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 259 (328)
++|.|++|+.+. ++.+.|+.|.++|++|+|.+||+ ++|||+||+|.+....+.+|++.|+++|+|++|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999984 67899999999999999999999 36999999998775444589999999999999987654
Q ss_pred eeeeeeeeceeeeeeeeccceeccCCcCCCCcccce
Q 020276 260 YEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFI 295 (328)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi 295 (328)
..... +.|.. ..+|||.+||
T Consensus 76 -~~~~~--------------~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDK--------------HVFEK-PSGWGFSKFI 95 (95)
T ss_pred -eeeee--------------EEEcC-CCccceeeEC
Confidence 22222 77875 7889999886
No 35
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-14 Score=137.92 Aligned_cols=133 Identities=28% Similarity=0.513 Sum_probs=109.9
Q ss_pred cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC--C-CCCCeEEEEE
Q 020276 17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS--L-GLGWEVYVIF 93 (328)
Q Consensus 17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~--~-~~~w~~~~~~ 93 (328)
+...-+|+|+|++++.+. .+++||+|.+||+.|+|.++|+|+.+ .+ .||||+....+. . ...|.|+|+|
T Consensus 35 e~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 455678999999999994 47899999999999999999999872 23 999999877531 2 2349999999
Q ss_pred EEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCC---eeeCCEEEEEEEEEE-eec
Q 020276 94 RLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNG---YLVGDTCVFGAEVFV-KET 160 (328)
Q Consensus 94 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~---~l~dd~l~i~~~v~v-~~~ 160 (328)
.|.|-|...+....... ..|+|+....+|||.+|+.+..|..|+.| |+.+|++.|.+.|+| +++
T Consensus 107 af~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 107 AFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred eeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 99999887654433222 57899998999999999999999876666 789999999999999 776
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-13 Score=131.18 Aligned_cols=132 Identities=27% Similarity=0.438 Sum_probs=106.9
Q ss_pred CCceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC--C-CCCCCeEEEEEEEEEEc
Q 020276 177 SNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSS--T-ITGGSKIYVHFTLRIRN 253 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~--~-~~~~w~~~~~~~~~l~~ 253 (328)
....++|+|++|+.+.+ ...||.|.+||+.|+|.++|+|+... -+||||+....+ . ....|.|+|+|.|.|-+
T Consensus 37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 36789999999999985 68899999999999999999998754 389999886442 1 12359999999999999
Q ss_pred CCCCcee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCC---eEECCEEEEEEEEEEEee-ec
Q 020276 254 QLVSKHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNG---FLVNDVCIVEAEVPVLGI-SK 326 (328)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---fl~~D~l~i~~~V~i~~~-~~ 326 (328)
+..+... ...+. |+|+....+|||.+|+.+.+|..|..| |+.+|++.|.|.|+|++. ||
T Consensus 113 p~~pti~~iN~sH--------------hrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTG 176 (1089)
T COG5077 113 PKYPTIEYINKSH--------------HRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTG 176 (1089)
T ss_pred CCCCchhhhhccc--------------ccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCcc
Confidence 8765422 22332 889888899999999999999875433 789999999999999975 44
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.09 E-value=7.3e-11 Score=106.61 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=143.5
Q ss_pred EEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC
Q 020276 24 LLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKD 103 (328)
Q Consensus 24 ~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~~~~ 103 (328)
.|.+.+|+... ..++|..|..++..|++.+||.|+ +++.|+.+.... +|.+.++++|++.|+...
T Consensus 7 ~~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~ 71 (297)
T KOG1987|consen 7 TWVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSE 71 (297)
T ss_pred ceeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCc
Confidence 39999998873 688999999999999999999963 789999887653 699999999999999887
Q ss_pred ce-eEeecccCceeeec--CCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccCCCcee-------eeecc
Q 020276 104 EF-LILQDAMGKQRRFH--GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGEC-------LSMKK 172 (328)
Q Consensus 104 ~~-~~~~~~~~~~~~F~--~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~~~~~~-------~~~~~ 172 (328)
++ ..... ....|. .-...||+..+++...+.++..||+.++.+.+-+.+.| +......... .....
T Consensus 72 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~ 148 (297)
T KOG1987|consen 72 KYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK 148 (297)
T ss_pred ceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccc
Confidence 65 43311 233333 33578999999999999988899999988888877777 4442111000 00111
Q ss_pred ccc-cCCceEEEEEcccccCCC----ceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecC
Q 020276 173 LTS-TSNYKYVWKIENFSKLPD----KIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTD 233 (328)
Q Consensus 173 p~s-~~~~~~~w~I~nfs~~~~----~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~ 233 (328)
++. ..-..|+|.+.+++.... ....+..|..++..|++.++|.+.+......++.||+..+
T Consensus 149 ~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~ 214 (297)
T KOG1987|consen 149 PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEAS 214 (297)
T ss_pred hhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhc
Confidence 220 011789999999998773 2566788999999999999999987665668888988765
No 38
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=79.16 Aligned_cols=121 Identities=30% Similarity=0.510 Sum_probs=97.1
Q ss_pred EEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCce-
Q 020276 181 YVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKH- 259 (328)
Q Consensus 181 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~- 259 (328)
+.|.+.+++... ..++|..|..++..|++.+||.|+ +++.|+.+.... +|.+.+.+.|.+.||...+.
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence 448888888776 668889999999999999999984 789999887542 79999999999999987654
Q ss_pred eee-eeeeeceeeeeeeeccceeccCC--cCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeec
Q 020276 260 YEK-KAKCKYLKVSIVVFATGEWLNTS--IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISK 326 (328)
Q Consensus 260 ~~~-~~~~~~~~~~~~~~~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~ 326 (328)
... ... .+|... ...||+..+++...+.+...||++++.+++-+.+.|.+..+
T Consensus 75 ~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 75 STVEEGF--------------SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eeeeeeE--------------EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 333 222 444332 57899999999999998889999999999988888876543
No 39
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.3e-06 Score=89.57 Aligned_cols=131 Identities=23% Similarity=0.200 Sum_probs=105.1
Q ss_pred CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCC
Q 020276 178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVS 257 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~ 257 (328)
....+|...+...+.. ...++.|..++.+|++.+.|+++.. ..+++|+.+...... ..|.+.+++.+.++|..++
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~ 100 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNSL---QSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDN 100 (1093)
T ss_pred cccccccCcCcchhhh-HhcCccccccccceeeeeccccCcc---cceeEEeeeccCCCC-cceEecchhhhccccCCCC
Confidence 3445566666666554 6778899999999999999999843 479999999877554 4599999999999994343
Q ss_pred cee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecC
Q 020276 258 KHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKA 327 (328)
Q Consensus 258 ~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~ 327 (328)
... .+... |.|.....+||+..|+.++++.++..||+.+|++.++++|+|...++.
T Consensus 101 ~~~~~~~~~--------------h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 101 LPDPEKAIH--------------HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred chhhhhhhh--------------hcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 322 22332 889888899999999999999999999999999999999999877654
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.4e-06 Score=87.44 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=105.4
Q ss_pred CcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 020276 20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLD 99 (328)
Q Consensus 20 ~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n 99 (328)
....+|...+...+. ....|+.|..|+.+|++.+.|+++. ...+++|+.+...... ..|.+.+++.+.+.|
T Consensus 26 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~ 96 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKN 96 (1093)
T ss_pred cccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhcccc
Confidence 344446665555543 3678999999999999999999874 5679999999988765 559999999999999
Q ss_pred CCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccC
Q 020276 100 QKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKK 162 (328)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~ 162 (328)
..++....... ..|.|.....+||+.+|+.++++.++..+|+.+|++.+++.|.+ .++..
T Consensus 97 ~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 97 TIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred CCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 44444333333 67889988899999999999999999999999999999999999 55543
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.24 E-value=0.00022 Score=66.62 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=70.1
Q ss_pred ccCCCcEEEEEEcCcccccc----cCCCeEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276 16 SHVPPAHFLLKIEAFSSLVE----NDVENYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE 88 (328)
Q Consensus 16 ~~~~~~~~~w~I~nfs~~~~----~~~~~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~ 88 (328)
+....|...|+|.++...+. .....++|++|.. .||..+.++|.+|++ .+.+.++|+|+.+..++.+ ...|+
T Consensus 275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp 353 (391)
T KOG0297|consen 275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP 353 (391)
T ss_pred hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence 34558999999999955543 2456789999965 599999999999987 5668899999999998765 66799
Q ss_pred EEEEEEEEEEeC
Q 020276 89 VYVIFRLFVLDQ 100 (328)
Q Consensus 89 ~~~~~~~~l~n~ 100 (328)
+.-+++|.|++|
T Consensus 354 f~~~v~~~l~dq 365 (391)
T KOG0297|consen 354 FRQKVTLMLLDQ 365 (391)
T ss_pred CCCceEEEEecc
Confidence 999999999999
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.11 E-value=0.00036 Score=65.21 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=68.3
Q ss_pred cCCceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~ 245 (328)
..++.+.|+|.+++..+ ...+.|+.|... ||+.+..+|-+|++.+.+.++|+|+.++.+. +....|+++-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 45899999999996554 256788888754 9999999999999998899999999999884 4457899999
Q ss_pred EEEEEEEcC
Q 020276 246 HFTLRIRNQ 254 (328)
Q Consensus 246 ~~~~~l~~~ 254 (328)
+++|.+++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
Done!