Query 020276
Match_columns 328
No_of_seqs 290 out of 1962
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 1.5E-30 5.2E-35 211.4 14.0 135 178-328 18-154 (155)
2 3ivv_A Speckle-type POZ protei 100.0 1.2E-29 4E-34 203.8 12.4 137 14-158 4-144 (145)
3 2foj_A Ubiquitin carboxyl-term 100.0 3.7E-29 1.3E-33 203.2 14.5 135 18-160 16-151 (155)
4 3ivv_A Speckle-type POZ protei 100.0 6.2E-29 2.1E-33 199.6 10.7 131 177-324 9-145 (145)
5 4gjh_A TNF receptor-associated 99.9 1.7E-28 6E-33 203.5 6.1 140 176-324 21-175 (178)
6 4gjh_A TNF receptor-associated 99.9 4.2E-28 1.4E-32 201.2 8.0 142 15-157 18-172 (178)
7 4ghu_A TNF receptor-associated 99.9 2.2E-27 7.5E-32 199.4 7.2 142 16-160 35-190 (198)
8 1lb6_A TNF receptor-associated 99.9 2E-26 6.9E-31 188.0 12.0 140 18-159 2-158 (160)
9 1ca9_A TRAF2, protein (TNF rec 99.9 2.4E-27 8.3E-32 199.1 6.4 137 177-323 41-191 (192)
10 1d00_A Tumor necrosis factor r 99.9 4.2E-27 1.4E-31 193.7 6.3 136 177-322 17-166 (168)
11 3hqi_A Speckle-type POZ protei 99.9 1.5E-26 5.1E-31 209.2 10.0 178 17-209 3-187 (312)
12 4ghu_A TNF receptor-associated 99.9 4.5E-27 1.5E-31 197.5 5.3 142 176-324 37-189 (198)
13 2gkw_A TNF receptor-associated 99.9 9.8E-27 3.3E-31 195.1 7.2 137 18-157 37-186 (192)
14 1ca9_A TRAF2, protein (TNF rec 99.9 2E-26 6.7E-31 193.6 8.8 138 18-157 40-189 (192)
15 1d00_A Tumor necrosis factor r 99.9 1.5E-26 5E-31 190.4 7.5 139 17-157 15-165 (168)
16 1lb6_A TNF receptor-associated 99.9 2.3E-26 8E-31 187.6 8.0 140 177-324 3-158 (160)
17 2gkw_A TNF receptor-associated 99.9 3.6E-26 1.2E-30 191.6 6.0 137 177-324 38-189 (192)
18 1flk_A TNF receptor associated 99.9 1.4E-25 4.9E-30 192.8 7.4 138 17-157 72-222 (228)
19 1flk_A TNF receptor associated 99.9 8E-26 2.7E-30 194.4 5.7 139 176-325 73-226 (228)
20 3hqi_A Speckle-type POZ protei 99.9 1.5E-24 5E-29 196.0 11.2 130 178-324 6-141 (312)
21 2f1z_A Ubiquitin carboxyl-term 99.9 6.1E-24 2.1E-28 204.9 11.8 136 17-160 27-163 (522)
22 2f1z_A Ubiquitin carboxyl-term 99.9 1.2E-23 3.9E-28 203.0 11.6 135 177-327 29-165 (522)
23 4gwm_A Meprin A subunit beta; 99.5 5E-14 1.7E-18 135.1 11.6 131 15-157 400-565 (592)
24 4gwm_A Meprin A subunit beta; 99.4 3.1E-13 1E-17 129.7 9.8 135 178-320 405-564 (592)
25 3v0r_A Major allergen ALT A 1; 25.4 13 0.00046 27.7 -0.2 31 16-47 7-37 (133)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.97 E-value=1.5e-30 Score=211.44 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=114.7
Q ss_pred CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCC
Q 020276 178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGV-ASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLV 256 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~-~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~ 256 (328)
.++|+|+|+|||.++ +.++|++|.+||++|+|++||+|++. +.++|||+||+|... ..+..|++.|+|+|+|+||++
T Consensus 18 ~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~ 95 (155)
T 2foj_A 18 EATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRD 95 (155)
T ss_dssp EEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSC
T ss_pred CcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCC
Confidence 789999999999996 67899999999999999999999865 356899999999644 345679999999999999988
Q ss_pred Cc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecCC
Q 020276 257 SK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL 328 (328)
Q Consensus 257 ~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~~ 328 (328)
+. +..+... ++|.....+|||++||++++|+++.+|||+||+|+|+|+|+|.+++|+|
T Consensus 96 ~~~~~~~~~~--------------~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 96 DEKSFSRRIS--------------HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp GGGCEEEEEE--------------EEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CcceEEeccE--------------EEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 65 3333333 7887667899999999999999777899999999999999999999986
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=1.2e-29 Score=203.84 Aligned_cols=137 Identities=31% Similarity=0.467 Sum_probs=117.4
Q ss_pred eeccCCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEE
Q 020276 14 SISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVY 90 (328)
Q Consensus 14 ~~~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~ 90 (328)
...++..++|+|+|+|||.+++..++.++|++|.+||| +|+|.+||+|+. .++.+||||||+|.+. .+|++.
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v~ 78 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEVR 78 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEEE
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcEE
Confidence 45677889999999999998754567899999999996 999999999987 4567999999999876 359999
Q ss_pred EEEEEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-e
Q 020276 91 VIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-K 158 (328)
Q Consensus 91 ~~~~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~ 158 (328)
|+|+|+|+||++++....... ..+.|.. ..+|||.+||++++|++++++||+||+|+|+|+|+| +
T Consensus 79 a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 79 AKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred EEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 999999999998776543332 5678875 588999999999999877899999999999999998 5
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=3.7e-29 Score=203.24 Aligned_cols=135 Identities=21% Similarity=0.343 Sum_probs=112.7
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276 18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFV 97 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l 97 (328)
...++|+|+|+|||.+. +.++|++|.+||++|+|.+||+|+...+..+||||||+|... ..+.+|++.|+|+|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 45799999999999993 689999999999999999999997621357899999999654 3466799999999999
Q ss_pred EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276 98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET 160 (328)
Q Consensus 98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~ 160 (328)
+||+++.....+. ..+.|.....+|||.+||++++|++++++||+||+|+|+|+|+| ++.
T Consensus 91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 9998876433333 57788876688999999999999988899999999999999999 654
No 4
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=6.2e-29 Score=199.62 Aligned_cols=131 Identities=27% Similarity=0.432 Sum_probs=110.8
Q ss_pred CCceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 020276 177 SNYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLR 250 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~ 250 (328)
.+++|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|+..++++|||+||+|.+. +.|+++|+|+|+
T Consensus 9 ~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l~ 84 (145)
T 3ivv_A 9 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 84 (145)
T ss_dssp CEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEEE
T ss_pred EEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEEE
Confidence 4789999999999987 36899999999995 9999999999877667899999999865 479999999999
Q ss_pred EEcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276 251 IRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324 (328)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~ 324 (328)
|+||+++.+...... ..++|. ...+|||++||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus 85 llnq~~~~~~~~~~~------------~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 85 ILNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EECTTSCEEEEEECS------------SCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEecCCCceeeeccc------------ceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999988764432211 127786 4688999999999999766689999999999999999863
No 5
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=203.46 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=112.5
Q ss_pred cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~ 245 (328)
+.+++|+|+|+|||.+++ ..+.|++|.+| |++|+|++||+|++.+.++|||+||+|.+++ +....|++.+
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 458999999999998863 27999999999 9999999999998876678999999998764 2235799999
Q ss_pred EEEEEEEcCCCCce-eeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 246 HFTLRIRNQLVSKH-YEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 246 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
+|+|.|+||.++.. ...... .. ...+.|.. .+.+|||++||++++|+++.+|||+||+|+|+|+|+
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~-----~~----~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~ 171 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFK-----AD----PNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVD 171 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEE-----CC----TTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEEC
T ss_pred EEEEEEEcCCCCcceeEEeec-----cC----CccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEE
Confidence 99999999987642 221100 00 01266753 356899999999999998888999999999999998
Q ss_pred EEee
Q 020276 321 VLGI 324 (328)
Q Consensus 321 i~~~ 324 (328)
|.+.
T Consensus 172 i~~~ 175 (178)
T 4gjh_A 172 LTDL 175 (178)
T ss_dssp CTTC
T ss_pred ecCC
Confidence 7653
No 6
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=4.2e-28 Score=201.17 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=115.0
Q ss_pred eccCCCcEEEEEEcCccccccc--CC--CeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCC
Q 020276 15 ISHVPPAHFLLKIEAFSSLVEN--DV--ENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGW 87 (328)
Q Consensus 15 ~~~~~~~~~~w~I~nfs~~~~~--~~--~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w 87 (328)
...+..|.|+|+|+|||.+++. .+ ..++|++|.+| ||+|+|.+||+|+. .+..+||||||+|.+++.+ ..+|
T Consensus 18 ~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W 96 (178)
T 4gjh_A 18 EGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQW 96 (178)
T ss_dssp HHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCS
T ss_pred cCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCC
Confidence 3567889999999999998751 23 38999999999 99999999999987 4557999999999876532 4579
Q ss_pred eEEEEEEEEEEeCCCCceeEeec--ccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 88 EVYVIFRLFVLDQKKDEFLILQD--AMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 88 ~~~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
++.|+|+|+|+||.++....... .....+.|.. ...+|||.+||++++|++++++||+||+|+|+|+|.|
T Consensus 97 ~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 97 PFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp SCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred ceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 99999999999998765433211 0002456763 2468999999999999977799999999999999988
No 7
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=2.2e-27 Score=199.40 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=113.4
Q ss_pred ccCCCcEEEEEEcCcccccc----cCCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276 16 SHVPPAHFLLKIEAFSSLVE----NDVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE 88 (328)
Q Consensus 16 ~~~~~~~~~w~I~nfs~~~~----~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~ 88 (328)
..+..|.|+|+|+|||.+++ ..++.++|++|.+| ||+|+|.+||+|+. .+.++||||||.+++++.+ ..+|+
T Consensus 35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp 113 (198)
T 4ghu_A 35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP 113 (198)
T ss_dssp TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence 35678999999999999875 13578999999999 99999999999987 4567899999999987543 45799
Q ss_pred EEEEEEEEEEeCCCCceeEeecc--cCceeee----cCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276 89 VYVIFRLFVLDQKKDEFLILQDA--MGKQRRF----HGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET 160 (328)
Q Consensus 89 ~~~~~~~~l~n~~~~~~~~~~~~--~~~~~~F----~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~ 160 (328)
+.|+|+|+|+||.+++....... ......| ...+.+|||.+||++++|+ ++|||+||+|+|+|+|.| ..+
T Consensus 114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 99999999999987644332110 0011123 3345689999999999999 589999999999999998 554
No 8
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.94 E-value=2e-26 Score=188.00 Aligned_cols=140 Identities=20% Similarity=0.250 Sum_probs=107.9
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 020276 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY 90 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~ 90 (328)
...|.|+|+|+|||.+++ ..++ .++|++|.+| ||+|+|++||+|++.+.+.+||||||++++++.+ ..+|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 467999999999999875 2455 8999999999 9999999999997632247899999999877543 4579999
Q ss_pred EEEEEEEEeCCCCce--eEeec--ccCceeeecCC-----CCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-ee
Q 020276 91 VIFRLFVLDQKKDEF--LILQD--AMGKQRRFHGL-----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KE 159 (328)
Q Consensus 91 ~~~~~~l~n~~~~~~--~~~~~--~~~~~~~F~~~-----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~ 159 (328)
|+|+|+|+||.+... ..... .......|... ..+|||.+||++++|+ +++||+||+|+|+|+|.| .+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 999999999986521 11000 00012235431 2379999999999999 689999999999999998 54
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.94 E-value=2.4e-27 Score=199.12 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=109.5
Q ss_pred CCceEEEEEcccccCCCc-------eeecCceEe--CCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 020276 177 SNYKYVWKIENFSKLPDK-------IYESEVFVA--GDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVH 246 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~~-------~~~S~~f~~--~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~ 246 (328)
..++|+|+|.|||.+++. .++|++|.+ ||++|+|++||+|++.+.++|||+||++.++...+ ..|++.++
T Consensus 41 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a~ 120 (192)
T 1ca9_A 41 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 120 (192)
T ss_dssp SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEEE
Confidence 489999999999998732 489999999 99999999999998766678999999998775433 68999999
Q ss_pred EEEEEEcCCCCceeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEE
Q 020276 247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322 (328)
Q Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~ 322 (328)
|+|.|+||+++++...... +. ...+.|. ..+.+|||++||++++|++ .+|||+||+|+|+|+|+|.
T Consensus 121 ~~l~lldq~~~~~~~~~~~-------~~--~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 121 VTLMLLDQNNREHVIDAFR-------PD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp EEEEECCTTSSCCEEEEEC-------CC--TTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCT
T ss_pred EEEEEECCCCCceeeEeec-------cC--CchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEec
Confidence 9999999988754332211 00 0113453 2356899999999999994 3799999999999999885
Q ss_pred e
Q 020276 323 G 323 (328)
Q Consensus 323 ~ 323 (328)
+
T Consensus 191 ~ 191 (192)
T 1ca9_A 191 G 191 (192)
T ss_dssp T
T ss_pred C
Confidence 3
No 10
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=4.2e-27 Score=193.69 Aligned_cols=136 Identities=17% Similarity=0.253 Sum_probs=108.3
Q ss_pred CCceEEEEEcccccCCC-----c--eeecCceE--eCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 020276 177 SNYKYVWKIENFSKLPD-----K--IYESEVFV--AGDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVH 246 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~--~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~ 246 (328)
.+++|+|+|+|||.+++ + .+.|++|. +||++|+|++||+|++.+.++|||+||+|.++...+ ..|++.++
T Consensus 17 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~~ 96 (168)
T 1d00_A 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 96 (168)
T ss_dssp SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEEE
Confidence 48999999999999863 2 38999996 789999999999998766678999999998765433 68999999
Q ss_pred EEEEEEcCCCCceeeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEE
Q 020276 247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322 (328)
Q Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~ 322 (328)
|+|.|+||+++.+...... +. ...+.|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.
T Consensus 97 ~~l~ll~q~~~~~~~~~~~-------~~--~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 97 VTLMLLDQNNREHVIDAFR-------PD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp EEEEECCTTSSCCEEEEEC-------CC--TTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEECCCCCccceeccc-------cC--cchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 9999999988654432210 00 00134642 4578999999999999984 499999999999999875
No 11
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.93 E-value=1.5e-26 Score=209.17 Aligned_cols=178 Identities=26% Similarity=0.400 Sum_probs=129.7
Q ss_pred cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEE
Q 020276 17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIF 93 (328)
Q Consensus 17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~ 93 (328)
++..|+|+|+|+|||.++...++.++||+|.+||+ +|+|.+||+|+. +++++|||+||+|.+++ +|++.|+|
T Consensus 3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~ 77 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF 77 (312)
T ss_dssp EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEE
T ss_pred ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEE
Confidence 45578999999999999654578999999999995 999999999987 45689999999998654 49999999
Q ss_pred EEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccC-CCceeeeec
Q 020276 94 RLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKK-CTGECLSMK 171 (328)
Q Consensus 94 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~-~~~~~~~~~ 171 (328)
+|+|+|++++........ ..+.|... .+|||.+||++++|+++++|||+||+|+|+|+|.| ++... ...+....+
T Consensus 78 ~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~ 154 (312)
T 3hqi_A 78 KFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMV 154 (312)
T ss_dssp EEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSC
T ss_pred EEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccccccccccc
Confidence 999999998776554432 56788864 68999999999999887889999999999999999 65421 121111122
Q ss_pred c-ccccCCceEEEEEcccccCC-CceeecCceEeCCeeEE
Q 020276 172 K-LTSTSNYKYVWKIENFSKLP-DKIYESEVFVAGDQKWK 209 (328)
Q Consensus 172 ~-p~s~~~~~~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~ 209 (328)
+ |++ + ...++..+. .....+..+.++|.++.
T Consensus 155 ~~p~~--~-----l~~~l~~l~~~~~~~Dv~l~v~~~~f~ 187 (312)
T 3hqi_A 155 KVPEC--R-----LADELGGLWENSRFTDCCLCVAGQEFQ 187 (312)
T ss_dssp CCCCC--C-----HHHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred CCCCc--h-----HHHHHHHHHhCCCCCceEEEECCEEEe
Confidence 2 332 1 123344433 23344557778886643
No 12
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=4.5e-27 Score=197.54 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=110.7
Q ss_pred cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~ 245 (328)
+.+++|+|+|+|||.+++ +.+.|++|.+| |++|+|++||+|++.+.++|||+||++.+++. ....|++.+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 458999999999998763 57999999999 99999999999988766789999999987642 245899999
Q ss_pred EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276 246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324 (328)
Q Consensus 246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~ 324 (328)
+|+|.|+||.++. +...... ..+......+.|...+.+|||++||++++|++ +|||+||+|+|+|+|+|+..
T Consensus 117 ~~~l~Lldq~~~~~~~~~~~~-----~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDAFK-----PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp CEEEEECCCSTTCCCEEEEEC-----CCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTC
T ss_pred EEEEEEEcCCCCccceEEEee-----cCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccC
Confidence 9999999998653 2222110 00000000122334567899999999999997 79999999999999998764
No 13
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=9.8e-27 Score=195.09 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=110.9
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 020276 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY 90 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~ 90 (328)
...|+|+|+|+|||.+++ ..++ .++|++|.+| ||+|+|++||+|++ .+.++|||+||++++++.+ ..+|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence 478999999999999874 2344 5999999999 99999999999987 4567999999999877654 4579999
Q ss_pred EEEEEEEEeCCCCceeEeec--ccCceeeecCC----CCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 91 VIFRLFVLDQKKDEFLILQD--AMGKQRRFHGL----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 91 ~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
|+|+|+|+||.+.+...... .....+.|..+ +.+|||.+||++++|+ ++|||+||+|+|+|+|.|
T Consensus 116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECC
T ss_pred EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEc
Confidence 99999999998875433211 00022557542 3679999999999999 469999999999999987
No 14
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=2e-26 Score=193.57 Aligned_cols=138 Identities=23% Similarity=0.316 Sum_probs=110.7
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeEE
Q 020276 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEVY 90 (328)
Q Consensus 18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~ 90 (328)
...|.|+|+|+|||.+++ ..++ .++||+|.+ |||+|+|.+||+|+. .+..+||||||++.+++.++ .+|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence 678999999999999875 2344 599999999 999999999999987 44579999999998876544 689999
Q ss_pred EEEEEEEEeCCCCceeEeecc-cCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 91 VIFRLFVLDQKKDEFLILQDA-MGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 91 ~~~~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
|+|+|+|+||++++....... ......|.. ...+|||.+||++++|++ +++||+||+|+|+|+|.|
T Consensus 119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence 999999999988743221100 001234642 246899999999999986 579999999999999987
No 15
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=1.5e-26 Score=190.44 Aligned_cols=139 Identities=23% Similarity=0.312 Sum_probs=109.7
Q ss_pred cCCCcEEEEEEcCcccccc--cCCC--eEEcCcEE--ecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeE
Q 020276 17 HVPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFD--AGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEV 89 (328)
Q Consensus 17 ~~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~--~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~ 89 (328)
....|+|+|+|+|||.+++ ..++ .++||+|. +|||+|+|.+||+|+. .+.++||||||++.+++.++ .+|++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~ 93 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF 93 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence 4578999999999999875 2344 39999996 7899999999999987 44579999999998876543 68999
Q ss_pred EEEEEEEEEeCCCCceeEeec-ccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 90 YVIFRLFVLDQKKDEFLILQD-AMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 90 ~~~~~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
.|+|+|+|+||++.+...... .....+.|.. .+.+|||.+||++++|+++ +|||+||+|+|+|+|.|
T Consensus 94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v 165 (168)
T 1d00_A 94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL 165 (168)
T ss_dssp CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence 999999999998865322110 0001235653 3467999999999999953 39999999999999987
No 16
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.93 E-value=2.3e-26 Score=187.59 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=104.6
Q ss_pred CCceEEEEEcccccCCC-----c--eeecCceEeC--CeeEEEEEecCCCCCC-CCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276 177 SNYKYVWKIENFSKLPD-----K--IYESEVFVAG--DQKWKILLFPKGLGVA-SGSHISMYLELTDSST-ITGGSKIYV 245 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~~--g~~W~i~~yp~G~~~~-~~~~lsvyL~~~~~~~-~~~~w~~~~ 245 (328)
.+++|+|+|+|||.+++ + .+.|++|.+| |++|+|++||+|++.+ +++|||+||++++++. ....|++++
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 37899999999998863 2 7999999999 9999999999998754 3789999999987643 245799999
Q ss_pred EEEEEEEcCCCCceeeeeeeeeceeeeeeeeccceeccC-----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNT-----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
+|+|.|+||.++... +... ......+ ....|.. ...+|||++||++++|++ +|||+||+|+|+|+|+
T Consensus 83 ~~~l~lldq~~~~~~-~~~~-~~~~~~~----~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~ 154 (160)
T 1lb6_A 83 TIRLTILDQSEAPVR-QNHE-EIMDAKP----ELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154 (160)
T ss_dssp EEEEEECCCSCTTSC-CCEE-EEEECCT----TSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred eEEEEEEcCCCcccc-ccce-EEeecCC----cchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEE
Confidence 999999999865311 1100 0000000 1123432 123799999999999996 7999999999999999
Q ss_pred EEee
Q 020276 321 VLGI 324 (328)
Q Consensus 321 i~~~ 324 (328)
|+.+
T Consensus 155 v~~~ 158 (160)
T 1lb6_A 155 TRFD 158 (160)
T ss_dssp C---
T ss_pred Eeec
Confidence 9864
No 17
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.92 E-value=3.6e-26 Score=191.61 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=109.2
Q ss_pred CCceEEEEEcccccCCC-----c--eeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEEE
Q 020276 177 SNYKYVWKIENFSKLPD-----K--IYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYVH 246 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~~ 246 (328)
..++|+|+|.|||.++. + .+.|++|.+| |++|+|++||+|++.++++|||+||++.+++. ....|++.++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 48999999999999862 2 5899999999 99999999999987767789999999987643 2458999999
Q ss_pred EEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEEE
Q 020276 247 FTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV 321 (328)
Q Consensus 247 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i 321 (328)
|+|.|+||.++. +...... .. ...+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|+|
T Consensus 118 ~~l~lldq~~~~~~~~~~~~-----~~----~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFK-----PD----PNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp EEEEECCCSTTCCCEEEEEC-----CC----TTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred EEEEEECCCCCccceEEEEe-----cC----CCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence 999999998764 2221110 00 01245643 246899999999999998 59999999999999987
Q ss_pred Eee
Q 020276 322 LGI 324 (328)
Q Consensus 322 ~~~ 324 (328)
.+.
T Consensus 187 ~~~ 189 (192)
T 2gkw_A 187 SDL 189 (192)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
No 18
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=1.4e-25 Score=192.83 Aligned_cols=138 Identities=19% Similarity=0.226 Sum_probs=111.2
Q ss_pred cCCCcEEEEEEcCcccccc-c-CC--CeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE
Q 020276 17 HVPPAHFLLKIEAFSSLVE-N-DV--ENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV 89 (328)
Q Consensus 17 ~~~~~~~~w~I~nfs~~~~-~-~~--~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~ 89 (328)
....|+|+|+|+|||.+++ . .+ ..++|++|.+| ||+|+|++||+|++ .+.++|||+||++++++.+ ..+|++
T Consensus 72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~ 150 (228)
T 1flk_A 72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 150 (228)
T ss_dssp CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence 3578999999999999875 2 23 37999999999 99999999999987 4568999999999877654 457999
Q ss_pred EEEEEEEEEeCCCCceeEeecc--cCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276 90 YVIFRLFVLDQKKDEFLILQDA--MGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 90 ~~~~~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v 157 (328)
.|+|+|+|+||.+.+.+..... ....+.|.. .+.+|||.+||++++|+ ++|||+||+|+|+|+|.|
T Consensus 151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence 9999999999988764332110 002345652 24679999999999999 589999999999999988
No 19
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=8e-26 Score=194.43 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=110.9
Q ss_pred cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276 176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYV 245 (328)
Q Consensus 176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~ 245 (328)
+..++|+|+|.|||.+++ ..+.|++|.+| |++|+|++||+|++.+.++|||+||++.+++. ....|++.+
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 358999999999998863 27899999999 99999999999987767789999999987643 345899999
Q ss_pred EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276 246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP 320 (328)
Q Consensus 246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~ 320 (328)
+|+|.|+||.++. +...... ..+ ..+.|. ..+.+|||++||++++|++ +|||+||+|+|+|+|+
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~-----~~~----~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~ 221 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFK-----PDP----NSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 221 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEEC-----CCT----TCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECC
T ss_pred EEEEEEEcCCCCccceeeeec-----CCC----ccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEE
Confidence 9999999998765 2222110 000 113464 2356899999999999997 7999999999999999
Q ss_pred EEeee
Q 020276 321 VLGIS 325 (328)
Q Consensus 321 i~~~~ 325 (328)
|.+..
T Consensus 222 v~~~~ 226 (228)
T 1flk_A 222 TSDLP 226 (228)
T ss_dssp CTTSC
T ss_pred ccccc
Confidence 87644
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.91 E-value=1.5e-24 Score=196.05 Aligned_cols=130 Identities=28% Similarity=0.434 Sum_probs=106.7
Q ss_pred CceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276 178 NYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI 251 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l 251 (328)
.++|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|++.++++|+|+||+|.+. ..|++.|+|+|+|
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l 81 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence 689999999999996 57899999999985 9999999999877677899999999864 3689999999999
Q ss_pred EcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276 252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324 (328)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~ 324 (328)
+||+++........ ..+.|. ++.+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus 82 ~~~~~~~~~~~~~~------------~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 82 LNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp ECTTSCEEEEEECS------------SCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EeCCCCcccccccC------------CceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 99988764432211 127786 4568999999999999877789999999999999999953
No 21
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=204.91 Aligned_cols=136 Identities=21% Similarity=0.338 Sum_probs=112.2
Q ss_pred cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 020276 17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLF 96 (328)
Q Consensus 17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~ 96 (328)
....++|+|+|+|||.++ +.++|++|.+||++|+|.+||+|+..+...+||||||.|.+. ..+.+|.+.|+|+|.
T Consensus 27 ~~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~ 101 (522)
T 2f1z_A 27 WRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK 101 (522)
T ss_dssp CCSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEE
T ss_pred ccCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEE
Confidence 355899999999999985 289999999999999999999997533357899999999876 356789999999999
Q ss_pred EEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276 97 VLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET 160 (328)
Q Consensus 97 l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~ 160 (328)
|+|+.++..+..+. ..+.|.....+|||.+||++++|.++++|||+||+++|+|+|+| .+.
T Consensus 102 l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 102 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp ECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred EEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 99998776554444 56788776688999999999999887899999999999999999 554
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=202.95 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=111.0
Q ss_pred CCceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276 177 SNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVA-SGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL 255 (328)
Q Consensus 177 ~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~-~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~ 255 (328)
..++|+|+|+|||.+++ .+.|++|.+||++|+|++||+|+..+ .++|||+||+|.+. ..+.+|.+.|+|+|.|+||.
T Consensus 29 ~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~ 106 (522)
T 2f1z_A 29 SEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYR 106 (522)
T ss_dssp SEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTT
T ss_pred CCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCC
Confidence 37899999999999986 78999999999999999999997543 56899999999876 44678999999999999998
Q ss_pred CCce-eeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecC
Q 020276 256 VSKH-YEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKA 327 (328)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~ 327 (328)
++.. ..+... ++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...+|.
T Consensus 107 ~~~~~~~~~~~--------------~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 107 DDEKSFSRRIS--------------HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp CGGGCEEEECC--------------EEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCccceeccce--------------eEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 7653 233333 888766788999999999999776689999999999999999876653
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.51 E-value=5e-14 Score=135.07 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=104.5
Q ss_pred eccCCCcEEEEEEcCcccccccCCCeEEcCcEEe-cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE-EE
Q 020276 15 ISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDA-GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV-YV 91 (328)
Q Consensus 15 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~ 91 (328)
+.+..+..+.|+|.||+++....+..++||+|.. .||+++|.+||++ ..|+|||++|.+++.+ .+.||+ .-
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence 4567788999999999999875567899999964 5999999999875 4689999999998764 678999 57
Q ss_pred EEEEEEEeCCCCceeEeecccCceeeec---------------------------C-----CCCCCCccccccccccccC
Q 020276 92 IFRLFVLDQKKDEFLILQDAMGKQRRFH---------------------------G-----LKLEWGFDQFIPLEEFINA 139 (328)
Q Consensus 92 ~~~~~l~n~~~~~~~~~~~~~~~~~~F~---------------------------~-----~~~~~G~~~fi~~~~L~~~ 139 (328)
+++|+|+||++....++. ....|+ . .+.+|||+.||+++.|.
T Consensus 474 q~t~~llDQ~pd~~~rms----~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~-- 547 (592)
T 4gwm_A 474 QATMTLLDQNPDIRQRMS----NQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK-- 547 (592)
T ss_dssp EEEEEECCCCSSGGGCCC----EEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--
T ss_pred EEEEEEeCCCCChHhcCc----eeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--
Confidence 899999999876554332 111221 1 12358999999999999
Q ss_pred CCCeeeCCEEEEEEEEEE
Q 020276 140 SNGYLVGDTCVFGAEVFV 157 (328)
Q Consensus 140 ~~~~l~dd~l~i~~~v~v 157 (328)
++.||+||.|+|.++|.=
T Consensus 548 ~r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 548 SRDFIKGDDVYILLTVED 565 (592)
T ss_dssp STTSSBTTBEEEEEEEEE
T ss_pred hcCcccCCeEEEEEEEEe
Confidence 678999999999998844
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.43 E-value=3.1e-13 Score=129.67 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=101.0
Q ss_pred CceEEEEEcccccCC---CceeecCceEe-CCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeE-EEEEEEEE
Q 020276 178 NYKYVWKIENFSKLP---DKIYESEVFVA-GDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKI-YVHFTLRI 251 (328)
Q Consensus 178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~-~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~-~~~~~~~l 251 (328)
...+.|+|+||+++. +..++||.|.. .||+++|.+||++ +.++|+|++|.+++ +..+.||+ .-+++|.|
T Consensus 405 CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~l 479 (592)
T 4gwm_A 405 CPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATMTL 479 (592)
T ss_dssp CCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEE
T ss_pred CCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEEEE
Confidence 567999999999987 36799999985 4999999999976 46999999999873 44589998 57899999
Q ss_pred EcCCCCceeeeeeeeeceeeeeeee--------c------cceecc-----CCcCCCCcccceeccccccCCCCeEECCE
Q 020276 252 RNQLVSKHYEKKAKCKYLKVSIVVF--------A------TGEWLN-----TSIALGGWSKFIELNYLKKAGNGFLVNDV 312 (328)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~ 312 (328)
++|+......+..+ +.+++.|.-. + ....|. .++.+|||+.||+++.|++ +.||+||+
T Consensus 480 lDQ~pd~~~rms~~-~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d~ 556 (592)
T 4gwm_A 480 LDQNPDIRQRMSNQ-RSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGDD 556 (592)
T ss_dssp CCCCSSGGGCCCEE-EEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTTB
T ss_pred eCCCCChHhcCcee-EEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCCe
Confidence 99965443222222 4445443100 0 001121 2356899999999999997 58999999
Q ss_pred EEEEEEEE
Q 020276 313 CIVEAEVP 320 (328)
Q Consensus 313 l~i~~~V~ 320 (328)
|+|.+.|+
T Consensus 557 ~~i~~~~e 564 (592)
T 4gwm_A 557 VYILLTVE 564 (592)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999986
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=25.43 E-value=13 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred ccCCCcEEEEEEcCcccccccCCCeEEcCcEE
Q 020276 16 SHVPPAHFLLKIEAFSSLVENDVENYKSLEFD 47 (328)
Q Consensus 16 ~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~ 47 (328)
+.+..|-+.|+|.+|+..+. .+..+.|-.|.
T Consensus 7 pv~~~gd~vwkIs~F~~RKp-eGty~nsvsFn 37 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKP-EGTYYNSLGFN 37 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEET-TSSSCSEEEEE
T ss_pred ccccCCceEEEeeeeeeEcC-CCCceeeEEEE
Confidence 34556788888888887753 34455555553
Done!