Query 020277
Match_columns 328
No_of_seqs 452 out of 3120
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 2.4E-34 5.1E-39 281.3 31.7 308 1-310 1-314 (668)
2 PRK06475 salicylate hydroxylas 99.9 3.7E-25 8E-30 209.2 26.3 219 78-306 3-235 (400)
3 PRK06753 hypothetical protein; 99.9 5.3E-25 1.2E-29 206.2 26.7 214 78-307 1-214 (373)
4 TIGR03219 salicylate_mono sali 99.9 1.6E-24 3.4E-29 205.9 24.8 217 78-307 1-238 (414)
5 PRK08163 salicylate hydroxylas 99.9 4.9E-24 1.1E-28 201.3 26.1 221 76-306 3-230 (396)
6 PRK05868 hypothetical protein; 99.9 1E-23 2.2E-28 197.4 26.8 219 78-307 2-224 (372)
7 PRK07588 hypothetical protein; 99.9 7.9E-24 1.7E-28 199.6 26.1 219 78-307 1-222 (391)
8 PRK07236 hypothetical protein; 99.9 3.6E-24 7.9E-29 201.5 23.4 215 75-308 4-232 (386)
9 PRK07538 hypothetical protein; 99.9 7.6E-24 1.7E-28 201.1 25.0 219 78-309 1-237 (413)
10 COG0654 UbiH 2-polyprenyl-6-me 99.9 2.3E-24 5E-29 202.8 21.0 218 77-307 2-224 (387)
11 PRK08013 oxidoreductase; Provi 99.9 2.9E-23 6.2E-28 196.3 24.2 221 77-307 3-230 (400)
12 PRK06617 2-octaprenyl-6-methox 99.9 6.6E-23 1.4E-27 192.2 25.4 214 78-306 2-220 (374)
13 PRK08850 2-octaprenyl-6-methox 99.9 7E-23 1.5E-27 194.0 25.5 221 77-306 4-229 (405)
14 PRK06847 hypothetical protein; 99.9 1.5E-22 3.3E-27 189.7 26.1 220 76-308 3-225 (375)
15 TIGR01989 COQ6 Ubiquinone bios 99.9 2.2E-22 4.8E-27 192.3 25.0 220 78-307 1-245 (437)
16 KOG2614 Kynurenine 3-monooxyge 99.9 8.9E-23 1.9E-27 184.8 20.2 217 77-308 2-224 (420)
17 PRK09126 hypothetical protein; 99.9 2.1E-22 4.7E-27 189.8 23.2 223 77-308 3-229 (392)
18 PRK07045 putative monooxygenas 99.9 4.8E-22 1E-26 187.2 25.2 219 76-309 4-230 (388)
19 PRK06183 mhpA 3-(3-hydroxyphen 99.9 4.5E-22 9.7E-27 194.9 25.2 222 75-307 8-237 (538)
20 PF01494 FAD_binding_3: FAD bi 99.9 7.5E-22 1.6E-26 182.7 24.0 223 78-308 2-239 (356)
21 PRK08244 hypothetical protein; 99.9 1.4E-21 3E-26 189.7 26.5 213 77-306 2-219 (493)
22 TIGR01988 Ubi-OHases Ubiquinon 99.9 7.9E-22 1.7E-26 185.3 23.9 218 79-307 1-224 (385)
23 TIGR01984 UbiH 2-polyprenyl-6- 99.9 6.9E-22 1.5E-26 185.7 23.2 216 79-306 1-223 (382)
24 PRK07333 2-octaprenyl-6-methox 99.9 1.6E-21 3.5E-26 184.5 24.2 217 78-305 2-226 (403)
25 PRK07494 2-octaprenyl-6-methox 99.9 1.2E-21 2.7E-26 184.5 22.9 217 75-306 5-227 (388)
26 PRK08773 2-octaprenyl-3-methyl 99.9 3.3E-21 7.1E-26 181.8 25.8 223 75-307 4-230 (392)
27 PRK07364 2-octaprenyl-6-methox 99.9 2.2E-21 4.8E-26 184.2 23.9 219 76-306 17-241 (415)
28 PRK06184 hypothetical protein; 99.9 3.4E-21 7.3E-26 187.3 25.6 213 76-300 2-224 (502)
29 PRK08849 2-octaprenyl-3-methyl 99.9 2.8E-21 6E-26 181.8 24.2 167 77-251 3-174 (384)
30 PTZ00367 squalene epoxidase; P 99.9 3.8E-21 8.3E-26 187.4 23.0 216 75-309 31-283 (567)
31 PLN02985 squalene monooxygenas 99.9 6E-21 1.3E-25 184.9 24.2 221 73-308 39-269 (514)
32 PRK05732 2-octaprenyl-6-methox 99.9 7.9E-21 1.7E-25 179.3 24.2 219 76-306 2-229 (395)
33 PRK05714 2-octaprenyl-3-methyl 99.9 6.4E-21 1.4E-25 180.6 23.3 212 77-298 2-220 (405)
34 PRK08294 phenol 2-monooxygenas 99.9 1.3E-20 2.9E-25 186.8 26.1 220 76-306 31-274 (634)
35 PRK07608 ubiquinone biosynthes 99.9 1.7E-20 3.6E-25 176.7 24.8 219 76-306 4-227 (388)
36 PRK07190 hypothetical protein; 99.9 5.3E-20 1.1E-24 177.6 26.3 217 76-305 4-226 (487)
37 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 3.3E-20 7.1E-25 174.8 23.8 216 77-307 2-226 (390)
38 PRK08020 ubiF 2-octaprenyl-3-m 99.9 5.4E-20 1.2E-24 173.4 24.7 217 76-303 4-226 (391)
39 PRK08243 4-hydroxybenzoate 3-m 99.9 5.5E-20 1.2E-24 173.5 24.6 216 77-306 2-225 (392)
40 PRK06126 hypothetical protein; 99.9 6.6E-20 1.4E-24 180.1 25.4 171 75-251 5-195 (545)
41 PRK06185 hypothetical protein; 99.9 2.9E-20 6.3E-25 176.2 21.0 217 76-307 5-229 (407)
42 PRK06834 hypothetical protein; 99.8 3E-19 6.5E-24 172.5 24.9 209 76-305 2-214 (488)
43 PRK06996 hypothetical protein; 99.8 2.6E-19 5.7E-24 169.2 23.8 209 74-299 8-228 (398)
44 PRK08132 FAD-dependent oxidore 99.8 2E-18 4.3E-23 169.6 26.2 166 76-252 22-193 (547)
45 TIGR02032 GG-red-SF geranylger 99.8 3.1E-18 6.7E-23 154.7 20.8 207 78-307 1-214 (295)
46 PRK11445 putative oxidoreducta 99.8 2.6E-17 5.7E-22 153.0 20.0 160 78-253 2-166 (351)
47 PLN00093 geranylgeranyl diphos 99.8 1.8E-16 3.8E-21 151.6 24.3 205 74-304 36-261 (450)
48 COG0644 FixC Dehydrogenases (f 99.8 6.3E-17 1.4E-21 152.8 20.3 212 76-310 2-220 (396)
49 TIGR02023 BchP-ChlP geranylger 99.8 2.2E-16 4.7E-21 148.8 23.4 199 78-303 1-217 (388)
50 TIGR02028 ChlP geranylgeranyl 99.7 3.4E-15 7.5E-20 141.0 23.2 201 78-304 1-222 (398)
51 PLN02463 lycopene beta cyclase 99.7 2.9E-15 6.4E-20 142.6 19.9 147 74-248 25-173 (447)
52 PRK10157 putative oxidoreducta 99.7 1.2E-14 2.5E-19 138.7 20.9 166 76-251 4-171 (428)
53 PRK10015 oxidoreductase; Provi 99.6 1E-14 2.3E-19 138.9 18.7 165 76-251 4-171 (429)
54 KOG1298 Squalene monooxygenase 99.6 5.9E-15 1.3E-19 132.3 15.1 221 75-310 43-272 (509)
55 PLN02697 lycopene epsilon cycl 99.6 9.7E-14 2.1E-18 134.4 22.8 195 76-302 107-319 (529)
56 PF04820 Trp_halogenase: Trypt 99.6 1.4E-13 3E-18 131.8 19.5 213 79-301 1-270 (454)
57 PRK08255 salicylyl-CoA 5-hydro 99.6 5.7E-14 1.2E-18 142.7 17.7 144 78-251 1-148 (765)
58 TIGR01790 carotene-cycl lycope 99.6 6.5E-13 1.4E-17 125.1 23.0 144 79-250 1-147 (388)
59 COG2081 Predicted flavoprotein 99.5 9.9E-15 2.1E-19 132.5 8.0 160 76-246 2-169 (408)
60 PF05834 Lycopene_cycl: Lycope 99.5 2.4E-12 5.1E-17 120.7 22.8 140 79-245 1-143 (374)
61 TIGR01789 lycopene_cycl lycope 99.5 1.3E-12 2.8E-17 122.1 19.6 137 79-245 1-139 (370)
62 PF01266 DAO: FAD dependent ox 99.5 7.6E-12 1.6E-16 115.8 21.6 174 79-253 1-212 (358)
63 KOG3855 Monooxygenase involved 99.4 4.4E-12 9.6E-17 115.1 16.0 219 76-303 35-278 (481)
64 PRK04176 ribulose-1,5-biphosph 99.4 3.9E-12 8.4E-17 112.9 15.4 137 76-251 24-180 (257)
65 PRK11728 hydroxyglutarate oxid 99.4 2.5E-11 5.5E-16 114.6 19.8 174 78-252 3-212 (393)
66 TIGR01377 soxA_mon sarcosine o 99.4 4.8E-11 1E-15 112.0 20.9 172 78-250 1-207 (380)
67 PRK11259 solA N-methyltryptoph 99.4 6.1E-11 1.3E-15 111.2 20.7 60 186-246 145-206 (376)
68 TIGR00292 thiazole biosynthesi 99.4 3.7E-11 8E-16 106.3 16.2 135 76-250 20-176 (254)
69 PRK13369 glycerol-3-phosphate 99.3 2.1E-10 4.6E-15 111.7 22.6 170 75-247 4-218 (502)
70 PRK12409 D-amino acid dehydrog 99.3 4E-10 8.6E-15 107.0 23.7 67 187-253 194-267 (410)
71 PRK12266 glpD glycerol-3-phosp 99.3 2.5E-10 5.4E-15 111.2 21.9 61 186-246 151-218 (508)
72 PRK01747 mnmC bifunctional tRN 99.3 1.6E-10 3.4E-15 116.3 20.0 62 185-246 403-465 (662)
73 PF03486 HI0933_like: HI0933-l 99.3 1.9E-13 4E-18 128.6 -1.1 145 78-245 1-167 (409)
74 COG1635 THI4 Ribulose 1,5-bisp 99.3 4.4E-11 9.5E-16 100.3 12.4 135 76-250 29-184 (262)
75 PF13738 Pyr_redox_3: Pyridine 99.3 4.2E-11 9.1E-16 102.4 10.9 135 81-248 1-142 (203)
76 PF01946 Thi4: Thi4 family; PD 99.3 1.7E-10 3.6E-15 97.3 13.6 135 76-249 16-170 (230)
77 PLN02464 glycerol-3-phosphate 99.2 1.1E-09 2.4E-14 109.0 18.8 36 76-111 70-105 (627)
78 PLN02172 flavin-containing mon 99.2 1.8E-10 3.8E-15 110.6 12.7 153 74-245 7-174 (461)
79 PRK00711 D-amino acid dehydrog 99.2 4.1E-09 8.8E-14 100.2 21.3 61 186-246 197-259 (416)
80 TIGR01373 soxB sarcosine oxida 99.2 2.5E-09 5.3E-14 101.5 19.7 39 73-111 26-66 (407)
81 COG0665 DadA Glycine/D-amino a 99.2 2.3E-09 5E-14 100.8 18.6 68 184-252 150-220 (387)
82 COG0578 GlpA Glycerol-3-phosph 99.1 3E-09 6.4E-14 101.8 18.4 172 76-250 11-231 (532)
83 COG0579 Predicted dehydrogenas 99.1 3.4E-09 7.3E-14 99.4 18.0 179 76-254 2-221 (429)
84 TIGR03364 HpnW_proposed FAD de 99.1 6.7E-09 1.4E-13 97.1 19.6 163 78-245 1-198 (365)
85 TIGR03329 Phn_aa_oxid putative 99.1 2.8E-09 6.1E-14 102.8 17.5 59 185-245 178-238 (460)
86 PF00743 FMO-like: Flavin-bind 99.1 3.7E-10 8E-15 110.0 10.1 140 77-246 1-152 (531)
87 PRK05192 tRNA uridine 5-carbox 99.1 3E-09 6.5E-14 103.8 15.8 152 76-247 3-160 (618)
88 COG3380 Predicted NAD/FAD-depe 99.1 9E-10 2E-14 95.2 10.7 147 79-242 3-158 (331)
89 PRK11101 glpA sn-glycerol-3-ph 99.1 3.1E-09 6.8E-14 104.4 16.0 73 185-257 144-224 (546)
90 TIGR00275 flavoprotein, HI0933 99.1 3.8E-10 8.2E-15 106.8 8.6 153 81-244 1-160 (400)
91 PF01134 GIDA: Glucose inhibit 99.1 6.6E-09 1.4E-13 96.4 16.3 144 79-242 1-150 (392)
92 KOG1399 Flavin-containing mono 99.1 8.5E-10 1.8E-14 104.5 10.1 140 76-244 5-153 (448)
93 PRK13339 malate:quinone oxidor 99.0 5.7E-09 1.2E-13 100.6 14.4 69 182-250 176-253 (497)
94 TIGR01292 TRX_reduct thioredox 99.0 5.8E-09 1.3E-13 94.4 12.7 110 78-245 1-113 (300)
95 PRK05257 malate:quinone oxidor 99.0 5.8E-08 1.2E-12 94.1 19.5 69 182-250 175-252 (494)
96 COG2072 TrkA Predicted flavopr 99.0 9E-09 1.9E-13 98.4 13.0 136 74-245 5-145 (443)
97 PLN02661 Putative thiazole syn 98.9 7.5E-08 1.6E-12 88.1 17.6 38 75-112 90-128 (357)
98 PF12831 FAD_oxidored: FAD dep 98.9 1.2E-09 2.6E-14 104.2 6.0 144 79-244 1-150 (428)
99 PRK09853 putative selenate red 98.9 5.4E-09 1.2E-13 107.2 10.7 85 23-111 483-573 (1019)
100 TIGR01320 mal_quin_oxido malat 98.9 4E-08 8.7E-13 95.0 16.2 71 182-252 170-248 (483)
101 PRK15317 alkyl hydroperoxide r 98.9 1.2E-08 2.7E-13 99.7 12.7 111 75-244 209-322 (517)
102 PRK12779 putative bifunctional 98.9 7.2E-09 1.6E-13 107.2 11.1 38 74-111 303-340 (944)
103 TIGR01813 flavo_cyto_c flavocy 98.9 2.4E-08 5.1E-13 95.8 14.0 33 79-111 1-34 (439)
104 PRK08274 tricarballylate dehyd 98.9 4.6E-08 1E-12 94.5 16.1 36 76-111 3-38 (466)
105 PTZ00383 malate:quinone oxidor 98.9 3.8E-08 8.2E-13 95.1 14.9 65 185-250 206-279 (497)
106 PF13454 NAD_binding_9: FAD-NA 98.9 3.4E-08 7.4E-13 81.0 12.3 57 186-242 90-155 (156)
107 TIGR00551 nadB L-aspartate oxi 98.9 8.4E-08 1.8E-12 93.2 16.4 59 190-248 128-193 (488)
108 PRK07804 L-aspartate oxidase; 98.9 5.8E-08 1.3E-12 95.4 15.3 36 76-111 15-50 (541)
109 TIGR03140 AhpF alkyl hydropero 98.9 2.4E-08 5.3E-13 97.6 12.3 111 75-244 210-323 (515)
110 KOG2820 FAD-dependent oxidored 98.9 1.5E-07 3.3E-12 84.0 15.9 60 184-244 147-212 (399)
111 PRK06481 fumarate reductase fl 98.8 1.2E-07 2.7E-12 92.4 16.9 36 76-111 60-95 (506)
112 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.5E-07 3.2E-12 93.2 16.8 33 79-111 1-33 (566)
113 PRK08401 L-aspartate oxidase; 98.8 1.5E-07 3.3E-12 90.9 16.3 33 78-110 2-34 (466)
114 PF00890 FAD_binding_2: FAD bi 98.8 6.1E-08 1.3E-12 92.3 13.4 56 189-245 140-204 (417)
115 TIGR01176 fum_red_Fp fumarate 98.8 1.7E-07 3.7E-12 92.7 16.5 57 190-246 132-197 (580)
116 COG0492 TrxB Thioredoxin reduc 98.8 6.9E-08 1.5E-12 87.5 12.4 114 76-248 2-119 (305)
117 PRK09231 fumarate reductase fl 98.8 1.5E-07 3.4E-12 93.1 15.8 57 191-247 134-199 (582)
118 TIGR00136 gidA glucose-inhibit 98.8 1.1E-07 2.4E-12 92.8 13.8 153 78-250 1-160 (617)
119 PRK06175 L-aspartate oxidase; 98.8 2E-07 4.4E-12 89.1 15.2 34 77-111 4-37 (433)
120 PRK06567 putative bifunctional 98.8 1.7E-08 3.6E-13 102.6 7.6 37 73-109 379-415 (1028)
121 KOG0399 Glutamate synthase [Am 98.7 1.9E-08 4.2E-13 101.0 7.4 77 35-111 1737-1819(2142)
122 TIGR03143 AhpF_homolog putativ 98.7 7.1E-08 1.5E-12 95.1 11.3 110 77-246 4-116 (555)
123 TIGR03315 Se_ygfK putative sel 98.7 2.4E-08 5.2E-13 102.9 8.0 85 23-111 481-571 (1012)
124 PRK11883 protoporphyrinogen ox 98.7 1.9E-07 4E-12 89.7 13.7 56 191-246 222-277 (451)
125 PRK09897 hypothetical protein; 98.7 7.3E-08 1.6E-12 93.8 10.7 40 204-243 125-165 (534)
126 PRK06069 sdhA succinate dehydr 98.7 4.1E-07 9E-12 90.2 16.1 35 77-111 5-42 (577)
127 PLN02529 lysine-specific histo 98.7 5.6E-09 1.2E-13 104.6 2.3 76 28-111 119-194 (738)
128 COG1232 HemY Protoporphyrinoge 98.7 3.3E-07 7.2E-12 86.7 13.8 58 191-250 216-273 (444)
129 PRK07573 sdhA succinate dehydr 98.7 6.4E-07 1.4E-11 89.6 16.3 36 76-111 34-69 (640)
130 PRK08071 L-aspartate oxidase; 98.7 4.3E-07 9.4E-12 88.6 14.5 34 77-111 3-36 (510)
131 PRK05945 sdhA succinate dehydr 98.7 5.7E-07 1.2E-11 89.1 15.5 35 77-111 3-39 (575)
132 PRK12831 putative oxidoreducta 98.7 6.3E-08 1.4E-12 93.4 8.3 83 25-111 86-174 (464)
133 PRK07121 hypothetical protein; 98.7 1.3E-06 2.7E-11 85.1 17.2 36 76-111 19-54 (492)
134 PF00070 Pyr_redox: Pyridine n 98.7 4.1E-07 8.9E-12 65.7 10.5 34 79-112 1-34 (80)
135 PRK06854 adenylylsulfate reduc 98.7 7.5E-07 1.6E-11 88.7 15.9 35 77-111 11-47 (608)
136 PRK06452 sdhA succinate dehydr 98.7 1E-06 2.2E-11 87.1 16.6 36 76-111 4-39 (566)
137 PRK10262 thioredoxin reductase 98.6 5.5E-07 1.2E-11 82.7 13.3 35 75-109 4-38 (321)
138 PLN02568 polyamine oxidase 98.6 8.1E-07 1.8E-11 87.0 15.2 54 190-243 242-295 (539)
139 PRK08010 pyridine nucleotide-d 98.6 2.8E-07 6.1E-12 88.5 11.7 35 76-110 2-36 (441)
140 PRK08641 sdhA succinate dehydr 98.6 1.5E-06 3.2E-11 86.3 17.0 36 76-111 2-37 (589)
141 PRK05335 tRNA (uracil-5-)-meth 98.6 3.7E-07 8.1E-12 85.7 11.7 35 77-111 2-36 (436)
142 PRK12814 putative NADPH-depend 98.6 6.7E-08 1.4E-12 97.0 7.3 85 23-111 138-227 (652)
143 PRK05976 dihydrolipoamide dehy 98.6 9.2E-07 2E-11 85.6 14.7 34 76-109 3-36 (472)
144 TIGR01318 gltD_gamma_fam gluta 98.6 8.5E-08 1.8E-12 92.6 7.5 86 23-111 84-175 (467)
145 PRK12769 putative oxidoreducta 98.6 9E-08 2E-12 96.2 7.8 84 25-111 272-361 (654)
146 PRK08958 sdhA succinate dehydr 98.6 2E-06 4.3E-11 85.3 16.9 36 76-111 6-41 (588)
147 PTZ00139 Succinate dehydrogena 98.6 2.5E-06 5.4E-11 85.1 17.4 36 76-111 28-63 (617)
148 KOG2844 Dimethylglycine dehydr 98.6 3.9E-07 8.5E-12 87.8 10.8 190 74-265 36-264 (856)
149 PRK12810 gltD glutamate syntha 98.6 1.5E-07 3.3E-12 91.0 8.2 76 36-111 96-177 (471)
150 PRK11749 dihydropyrimidine deh 98.6 1.3E-07 2.8E-12 91.2 7.6 72 40-111 99-174 (457)
151 PRK12775 putative trifunctiona 98.6 1.4E-07 3E-12 98.6 7.8 81 26-111 378-464 (1006)
152 PLN00128 Succinate dehydrogena 98.6 2.2E-06 4.8E-11 85.6 15.9 36 76-111 49-84 (635)
153 PRK07057 sdhA succinate dehydr 98.5 4.2E-06 9E-11 83.2 17.6 36 76-111 11-46 (591)
154 PRK07803 sdhA succinate dehydr 98.5 3E-06 6.6E-11 84.7 16.7 36 76-111 7-42 (626)
155 PRK06263 sdhA succinate dehydr 98.5 2.1E-06 4.5E-11 84.6 15.3 35 76-111 6-40 (543)
156 PRK14694 putative mercuric red 98.5 2.2E-06 4.8E-11 82.9 15.1 37 74-110 3-39 (468)
157 PRK05249 soluble pyridine nucl 98.5 2.4E-06 5.1E-11 82.5 15.0 35 76-110 4-38 (461)
158 PRK12809 putative oxidoreducta 98.5 2.1E-07 4.5E-12 93.3 7.9 85 24-111 254-344 (639)
159 PRK06416 dihydrolipoamide dehy 98.5 2E-06 4.3E-11 83.1 14.5 35 76-110 3-37 (462)
160 COG1231 Monoamine oxidase [Ami 98.5 1E-06 2.3E-11 82.0 11.4 37 75-111 5-41 (450)
161 PRK12416 protoporphyrinogen ox 98.5 3.4E-07 7.4E-12 88.4 8.7 51 191-241 227-277 (463)
162 TIGR01316 gltA glutamate synth 98.5 3.3E-07 7E-12 88.2 8.4 86 23-111 72-167 (449)
163 PLN02507 glutathione reductase 98.5 3.6E-06 7.7E-11 82.0 15.7 35 75-109 23-57 (499)
164 PRK12842 putative succinate de 98.5 2.7E-06 5.8E-11 84.4 15.1 36 76-111 8-43 (574)
165 PRK09078 sdhA succinate dehydr 98.5 4E-06 8.7E-11 83.4 16.3 36 76-111 11-46 (598)
166 PRK06467 dihydrolipoamide dehy 98.5 1.7E-06 3.7E-11 83.7 13.3 35 76-110 3-37 (471)
167 PRK06116 glutathione reductase 98.5 2E-06 4.2E-11 82.9 13.5 33 77-109 4-36 (450)
168 PRK09754 phenylpropionate diox 98.5 1.1E-06 2.4E-11 83.1 11.5 36 76-111 2-39 (396)
169 KOG2852 Possible oxidoreductas 98.5 4.7E-07 1E-11 79.2 8.0 167 75-246 8-210 (380)
170 cd02929 TMADH_HD_FMN Trimethyl 98.5 1.7E-08 3.6E-13 94.3 -1.2 57 7-63 313-369 (370)
171 PF07992 Pyr_redox_2: Pyridine 98.5 2.6E-07 5.7E-12 78.6 6.1 33 79-111 1-33 (201)
172 TIGR01424 gluta_reduc_2 glutat 98.5 1.1E-06 2.3E-11 84.6 10.8 33 77-109 2-34 (446)
173 PRK12834 putative FAD-binding 98.5 6.1E-06 1.3E-10 81.4 16.4 35 76-110 3-37 (549)
174 PRK07251 pyridine nucleotide-d 98.5 1.8E-06 3.9E-11 82.8 12.3 35 76-110 2-36 (438)
175 PRK06134 putative FAD-binding 98.5 1.8E-05 3.8E-10 78.7 19.6 37 75-111 10-46 (581)
176 PRK09077 L-aspartate oxidase; 98.5 2E-06 4.4E-11 84.5 12.9 35 76-111 7-41 (536)
177 PF13450 NAD_binding_8: NAD(P) 98.5 2.4E-07 5.2E-12 64.7 4.6 30 82-111 1-30 (68)
178 PLN02815 L-aspartate oxidase 98.5 3.4E-06 7.3E-11 83.6 14.3 35 76-111 28-62 (594)
179 PRK04965 NADH:flavorubredoxin 98.5 2.8E-06 6.1E-11 79.9 13.2 101 76-245 140-240 (377)
180 TIGR01811 sdhA_Bsu succinate d 98.5 3.8E-06 8.3E-11 83.6 14.7 31 80-110 1-31 (603)
181 PRK12778 putative bifunctional 98.4 3.9E-07 8.5E-12 93.1 7.6 37 74-110 428-464 (752)
182 PRK08205 sdhA succinate dehydr 98.4 8.5E-06 1.8E-10 80.9 16.7 34 77-111 5-38 (583)
183 KOG2415 Electron transfer flav 98.4 1.7E-06 3.8E-11 79.3 10.5 165 73-251 72-263 (621)
184 PRK06370 mercuric reductase; V 98.4 1.1E-06 2.3E-11 84.9 9.9 35 76-110 4-38 (463)
185 PRK07818 dihydrolipoamide dehy 98.4 1.7E-06 3.8E-11 83.6 11.3 33 77-109 4-36 (466)
186 PRK08626 fumarate reductase fl 98.4 5.4E-06 1.2E-10 83.3 14.9 36 76-111 4-39 (657)
187 TIGR01421 gluta_reduc_1 glutat 98.4 2.4E-06 5.3E-11 82.2 11.9 35 76-110 1-35 (450)
188 PRK06115 dihydrolipoamide dehy 98.4 1.1E-06 2.4E-11 84.9 9.7 34 76-109 2-35 (466)
189 PRK07395 L-aspartate oxidase; 98.4 6.9E-06 1.5E-10 80.9 15.1 36 75-111 7-42 (553)
190 PRK07512 L-aspartate oxidase; 98.4 6.5E-06 1.4E-10 80.5 14.7 34 76-111 8-41 (513)
191 PTZ00318 NADH dehydrogenase-li 98.4 2.8E-06 6.1E-11 81.1 12.0 37 75-111 8-44 (424)
192 PRK08275 putative oxidoreducta 98.4 9.1E-06 2E-10 80.3 15.7 36 76-111 8-45 (554)
193 PRK05249 soluble pyridine nucl 98.4 5.7E-06 1.2E-10 79.9 13.8 102 76-247 174-275 (461)
194 COG1249 Lpd Pyruvate/2-oxoglut 98.4 5.7E-06 1.2E-10 79.0 13.4 103 75-247 171-275 (454)
195 PRK07843 3-ketosteroid-delta-1 98.4 9.2E-06 2E-10 80.2 15.4 36 76-111 6-41 (557)
196 PRK06327 dihydrolipoamide dehy 98.4 4.6E-06 1E-10 80.9 13.1 33 76-108 3-35 (475)
197 PRK13512 coenzyme A disulfide 98.4 2.3E-06 5.1E-11 82.0 10.9 34 78-111 2-37 (438)
198 TIGR01350 lipoamide_DH dihydro 98.4 7.9E-06 1.7E-10 78.9 14.6 32 78-109 2-33 (461)
199 COG0493 GltD NADPH-dependent g 98.4 7.1E-07 1.5E-11 85.2 7.1 63 49-111 95-157 (457)
200 PRK12835 3-ketosteroid-delta-1 98.4 4E-06 8.8E-11 83.1 12.7 36 76-111 10-45 (584)
201 PRK12771 putative glutamate sy 98.4 1E-06 2.2E-11 87.2 8.4 84 23-111 83-171 (564)
202 TIGR02485 CobZ_N-term precorri 98.4 1.2E-05 2.6E-10 77.0 15.4 30 82-111 1-30 (432)
203 PRK12839 hypothetical protein; 98.4 4.2E-05 9.2E-10 75.7 19.4 37 75-111 6-42 (572)
204 PRK09754 phenylpropionate diox 98.4 5.9E-06 1.3E-10 78.2 12.9 100 76-245 143-242 (396)
205 PRK07845 flavoprotein disulfid 98.4 6.7E-06 1.4E-10 79.5 13.3 33 78-110 2-34 (466)
206 PRK07846 mycothione reductase; 98.3 7.6E-06 1.6E-10 78.8 13.4 99 77-246 166-264 (451)
207 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 5.3E-06 1.2E-10 78.3 11.9 33 79-111 2-34 (433)
208 PRK12844 3-ketosteroid-delta-1 98.3 8.4E-06 1.8E-10 80.5 13.8 36 76-111 5-40 (557)
209 PRK09564 coenzyme A disulfide 98.3 2.1E-06 4.5E-11 82.5 9.2 34 78-111 1-36 (444)
210 PTZ00058 glutathione reductase 98.3 6E-06 1.3E-10 81.3 12.3 36 74-109 45-80 (561)
211 COG0029 NadB Aspartate oxidase 98.3 6.4E-06 1.4E-10 77.5 11.7 162 79-250 9-202 (518)
212 PRK06416 dihydrolipoamide dehy 98.3 1.1E-05 2.3E-10 78.0 13.9 100 77-246 172-274 (462)
213 PRK13748 putative mercuric red 98.3 2.2E-06 4.7E-11 84.9 9.0 34 76-109 97-130 (561)
214 PRK12837 3-ketosteroid-delta-1 98.3 1.3E-05 2.8E-10 78.4 14.2 35 76-111 6-40 (513)
215 PRK12843 putative FAD-binding 98.3 2.9E-05 6.3E-10 77.1 16.8 35 77-111 16-50 (578)
216 TIGR02061 aprA adenosine phosp 98.3 2E-05 4.4E-10 78.3 15.6 33 79-111 1-37 (614)
217 TIGR01317 GOGAT_sm_gam glutama 98.3 1.3E-06 2.9E-11 84.7 7.1 73 39-111 100-177 (485)
218 PRK06116 glutathione reductase 98.3 1.3E-05 2.9E-10 77.1 13.6 102 76-247 166-268 (450)
219 TIGR01350 lipoamide_DH dihydro 98.3 1.6E-05 3.4E-10 76.8 14.0 102 76-247 169-272 (461)
220 TIGR03197 MnmC_Cterm tRNA U-34 98.3 3.3E-05 7.1E-10 72.7 15.7 62 185-246 130-192 (381)
221 PTZ00052 thioredoxin reductase 98.3 4.1E-06 8.9E-11 81.6 9.8 33 77-109 5-37 (499)
222 PRK12845 3-ketosteroid-delta-1 98.3 6.5E-05 1.4E-09 74.2 18.2 36 75-111 14-49 (564)
223 PLN02507 glutathione reductase 98.2 2E-05 4.2E-10 76.9 13.8 100 77-246 203-302 (499)
224 PF06039 Mqo: Malate:quinone o 98.2 3E-05 6.5E-10 72.8 14.2 67 184-250 175-250 (488)
225 PTZ00306 NADH-dependent fumara 98.2 1.5E-05 3.2E-10 85.1 13.8 36 76-111 408-443 (1167)
226 PRK06292 dihydrolipoamide dehy 98.2 2.8E-05 6.1E-10 75.1 14.7 34 76-109 2-35 (460)
227 TIGR03378 glycerol3P_GlpB glyc 98.2 4.2E-05 9E-10 72.1 15.2 34 78-111 1-34 (419)
228 PRK06912 acoL dihydrolipoamide 98.2 2E-05 4.3E-10 76.1 13.3 32 79-110 2-33 (458)
229 COG2907 Predicted NAD/FAD-bind 98.2 8.7E-06 1.9E-10 73.2 9.8 42 204-245 233-274 (447)
230 TIGR01372 soxA sarcosine oxida 98.2 1.8E-05 4E-10 83.1 14.0 36 76-111 162-197 (985)
231 PRK14727 putative mercuric red 98.2 4.4E-06 9.4E-11 81.1 8.6 35 76-110 15-49 (479)
232 PRK07845 flavoprotein disulfid 98.2 2.7E-05 5.8E-10 75.4 14.0 101 77-247 177-277 (466)
233 TIGR03169 Nterm_to_SelD pyridi 98.2 1E-05 2.2E-10 75.6 10.8 33 79-111 1-36 (364)
234 TIGR03452 mycothione_red mycot 98.2 2.2E-05 4.8E-10 75.6 13.3 99 77-246 169-267 (452)
235 PRK13984 putative oxidoreducta 98.2 2.1E-06 4.6E-11 85.7 6.4 73 39-111 239-317 (604)
236 TIGR01424 gluta_reduc_2 glutat 98.2 2.7E-05 5.7E-10 75.0 13.6 101 76-246 165-265 (446)
237 PRK04965 NADH:flavorubredoxin 98.2 1.9E-05 4E-10 74.3 12.1 34 78-111 3-38 (377)
238 PRK07251 pyridine nucleotide-d 98.2 3.1E-05 6.6E-10 74.3 13.8 100 76-246 156-255 (438)
239 KOG0029 Amine oxidase [Seconda 98.2 1.9E-06 4.1E-11 83.3 5.3 39 73-111 11-49 (501)
240 PRK13800 putative oxidoreducta 98.2 6E-05 1.3E-09 78.6 16.8 36 76-111 12-47 (897)
241 TIGR01421 gluta_reduc_1 glutat 98.2 3.1E-05 6.8E-10 74.5 13.5 101 77-247 166-268 (450)
242 COG1233 Phytoene dehydrogenase 98.2 1.9E-06 4.2E-11 83.6 5.1 36 76-111 2-37 (487)
243 PLN02546 glutathione reductase 98.2 1.3E-05 2.8E-10 78.9 10.7 34 75-108 77-110 (558)
244 PRK07818 dihydrolipoamide dehy 98.2 4.4E-05 9.5E-10 73.9 14.0 102 76-247 171-276 (466)
245 PRK06115 dihydrolipoamide dehy 98.1 5.1E-05 1.1E-09 73.4 14.2 101 76-246 173-278 (466)
246 PRK06327 dihydrolipoamide dehy 98.1 4.5E-05 9.8E-10 74.0 13.8 102 76-247 182-287 (475)
247 KOG2665 Predicted FAD-dependen 98.1 1.2E-05 2.5E-10 71.5 8.6 177 74-250 45-263 (453)
248 TIGR02374 nitri_red_nirB nitri 98.1 2.7E-05 5.9E-10 79.9 12.5 101 76-245 139-239 (785)
249 COG4529 Uncharacterized protei 98.1 2.8E-05 6.1E-10 73.2 11.4 46 204-249 122-169 (474)
250 TIGR02053 MerA mercuric reduct 98.1 5.3E-05 1.2E-09 73.2 13.8 100 77-246 166-268 (463)
251 KOG2853 Possible oxidoreductas 98.1 0.00022 4.7E-09 64.3 16.2 36 76-111 85-124 (509)
252 TIGR01438 TGR thioredoxin and 98.1 3.4E-05 7.4E-10 74.9 12.4 33 77-109 2-34 (484)
253 PRK06912 acoL dihydrolipoamide 98.1 5.4E-05 1.2E-09 73.1 13.6 100 77-247 170-271 (458)
254 PRK06370 mercuric reductase; V 98.1 5.9E-05 1.3E-09 72.9 13.8 101 76-246 170-273 (463)
255 PLN02852 ferredoxin-NADP+ redu 98.1 4.8E-06 1E-10 80.3 6.0 39 74-112 23-63 (491)
256 PRK06467 dihydrolipoamide dehy 98.1 5.5E-05 1.2E-09 73.3 13.3 100 77-247 174-277 (471)
257 COG3349 Uncharacterized conser 98.1 3.6E-06 7.8E-11 79.8 4.6 35 78-112 1-35 (485)
258 PRK14989 nitrite reductase sub 98.1 4.3E-05 9.2E-10 78.8 12.7 102 76-246 144-247 (847)
259 PF13434 K_oxygenase: L-lysine 98.1 7E-06 1.5E-10 75.9 6.2 142 77-250 2-165 (341)
260 COG1249 Lpd Pyruvate/2-oxoglut 98.1 6.8E-05 1.5E-09 71.7 13.0 35 76-110 3-37 (454)
261 PRK05976 dihydrolipoamide dehy 98.1 7.2E-05 1.6E-09 72.5 13.3 35 77-111 180-214 (472)
262 PRK14989 nitrite reductase sub 98.0 3.2E-05 7E-10 79.7 11.2 35 77-111 3-41 (847)
263 PRK08010 pyridine nucleotide-d 98.0 9.5E-05 2.1E-09 71.0 13.8 100 76-246 157-256 (441)
264 PTZ00153 lipoamide dehydrogena 98.0 2.4E-05 5.1E-10 78.3 9.2 34 76-109 115-148 (659)
265 PTZ00052 thioredoxin reductase 98.0 8.3E-05 1.8E-09 72.5 12.6 100 77-247 182-281 (499)
266 TIGR01423 trypano_reduc trypan 98.0 0.00011 2.4E-09 71.3 13.4 102 76-247 186-291 (486)
267 TIGR02352 thiamin_ThiO glycine 98.0 0.00071 1.5E-08 62.1 18.3 62 184-246 131-195 (337)
268 COG0445 GidA Flavin-dependent 98.0 2E-05 4.2E-10 75.1 7.4 145 76-243 3-157 (621)
269 TIGR01423 trypano_reduc trypan 98.0 2.6E-05 5.6E-10 75.7 8.4 34 76-109 2-36 (486)
270 TIGR03385 CoA_CoA_reduc CoA-di 98.0 0.00012 2.5E-09 70.0 12.9 99 76-245 136-234 (427)
271 PRK07233 hypothetical protein; 98.0 7.6E-06 1.6E-10 78.1 4.7 53 192-244 200-254 (434)
272 PF13434 K_oxygenase: L-lysine 98.0 0.00017 3.6E-09 66.8 13.4 137 74-242 187-339 (341)
273 PRK07208 hypothetical protein; 98.0 8.9E-06 1.9E-10 78.9 5.2 36 76-111 3-38 (479)
274 PLN02328 lysine-specific histo 98.0 8.9E-06 1.9E-10 82.4 5.3 60 49-111 213-272 (808)
275 PTZ00188 adrenodoxin reductase 97.9 1.4E-05 3.1E-10 76.4 5.9 38 75-112 37-75 (506)
276 PRK14694 putative mercuric red 97.9 0.00015 3.3E-09 70.1 13.2 98 77-246 178-275 (468)
277 PRK13512 coenzyme A disulfide 97.9 0.00013 2.7E-09 70.1 12.3 35 77-111 148-182 (438)
278 PLN02576 protoporphyrinogen ox 97.9 1.2E-05 2.7E-10 78.3 5.3 37 75-111 10-47 (496)
279 PRK14727 putative mercuric red 97.9 0.00017 3.6E-09 70.1 13.1 99 77-247 188-286 (479)
280 COG3634 AhpF Alkyl hydroperoxi 97.9 2.2E-05 4.7E-10 70.7 6.3 32 75-106 209-240 (520)
281 TIGR02733 desat_CrtD C-3',4' d 97.9 1.3E-05 2.8E-10 78.1 5.3 34 78-111 2-35 (492)
282 PLN02487 zeta-carotene desatur 97.9 2.3E-05 4.9E-10 77.2 7.0 67 76-144 74-152 (569)
283 KOG2404 Fumarate reductase, fl 97.9 9.2E-05 2E-09 66.1 9.7 33 79-111 11-43 (477)
284 PTZ00058 glutathione reductase 97.9 0.00023 4.9E-09 70.3 13.5 100 77-246 237-338 (561)
285 COG1053 SdhA Succinate dehydro 97.9 0.00012 2.7E-09 71.8 11.6 38 76-113 5-42 (562)
286 PRK06292 dihydrolipoamide dehy 97.9 0.00022 4.7E-09 68.9 13.2 101 76-247 168-271 (460)
287 PLN02268 probable polyamine ox 97.9 1.6E-05 3.5E-10 76.1 5.0 40 204-243 212-251 (435)
288 COG1252 Ndh NADH dehydrogenase 97.9 7.8E-05 1.7E-09 69.8 9.3 36 76-111 2-39 (405)
289 PRK13748 putative mercuric red 97.9 0.00022 4.8E-09 70.6 13.1 99 76-246 269-367 (561)
290 TIGR00562 proto_IX_ox protopor 97.9 1.7E-05 3.7E-10 76.5 5.0 51 194-244 229-279 (462)
291 TIGR02374 nitri_red_nirB nitri 97.8 7.5E-05 1.6E-09 76.7 9.8 40 204-245 70-109 (785)
292 PRK09564 coenzyme A disulfide 97.8 0.00026 5.7E-09 68.0 13.0 35 76-110 148-182 (444)
293 COG0446 HcaD Uncharacterized N 97.8 0.00019 4.2E-09 67.7 11.9 99 77-244 136-237 (415)
294 TIGR01438 TGR thioredoxin and 97.8 0.00021 4.5E-09 69.5 12.3 99 77-246 180-281 (484)
295 PTZ00153 lipoamide dehydrogena 97.8 0.00027 5.8E-09 70.8 12.8 35 77-111 312-346 (659)
296 TIGR03140 AhpF alkyl hydropero 97.8 0.00023 5E-09 69.7 12.0 35 76-110 351-385 (515)
297 TIGR02734 crtI_fam phytoene de 97.8 2E-05 4.3E-10 77.0 4.4 61 190-250 219-282 (502)
298 TIGR02730 carot_isom carotene 97.8 2.6E-05 5.6E-10 76.0 5.0 61 190-250 229-292 (493)
299 KOG0404 Thioredoxin reductase 97.8 7.6E-05 1.6E-09 63.3 6.9 113 77-244 8-124 (322)
300 TIGR02731 phytoene_desat phyto 97.8 2.6E-05 5.6E-10 75.2 4.7 59 79-137 1-71 (453)
301 KOG3923 D-aspartate oxidase [A 97.7 0.00087 1.9E-08 59.4 13.0 38 76-113 2-46 (342)
302 TIGR02053 MerA mercuric reduct 97.7 3.9E-05 8.4E-10 74.2 4.9 33 78-110 1-33 (463)
303 KOG2311 NAD/FAD-utilizing prot 97.7 0.00015 3.2E-09 68.0 8.1 37 75-111 26-62 (679)
304 PLN02546 glutathione reductase 97.7 0.00073 1.6E-08 66.7 13.4 102 76-247 251-353 (558)
305 TIGR03452 mycothione_red mycot 97.7 0.00016 3.5E-09 69.7 8.6 32 77-110 2-33 (452)
306 PRK13977 myosin-cross-reactive 97.7 6.3E-05 1.4E-09 73.3 5.6 37 75-111 20-60 (576)
307 PTZ00318 NADH dehydrogenase-li 97.7 0.00058 1.3E-08 65.3 12.1 40 200-244 241-280 (424)
308 COG1148 HdrA Heterodisulfide r 97.7 5.5E-05 1.2E-09 70.9 4.8 37 75-111 122-158 (622)
309 TIGR00031 UDP-GALP_mutase UDP- 97.6 5.9E-05 1.3E-09 70.5 5.0 33 78-110 2-34 (377)
310 PRK07846 mycothione reductase; 97.6 0.00043 9.4E-09 66.7 11.0 31 78-110 2-32 (451)
311 KOG3851 Sulfide:quinone oxidor 97.6 4.3E-05 9.4E-10 68.0 3.6 38 74-111 36-75 (446)
312 PLN02612 phytoene desaturase 97.6 7.6E-05 1.7E-09 73.9 5.6 39 73-111 89-127 (567)
313 PRK12770 putative glutamate sy 97.6 9.4E-05 2E-09 68.9 5.7 38 74-111 15-52 (352)
314 TIGR02732 zeta_caro_desat caro 97.6 6.4E-05 1.4E-09 72.9 4.7 33 79-111 1-33 (474)
315 KOG0042 Glycerol-3-phosphate d 97.6 0.00021 4.6E-09 67.9 7.8 57 76-135 66-122 (680)
316 PRK10262 thioredoxin reductase 97.6 0.001 2.3E-08 61.0 12.2 35 76-110 145-179 (321)
317 TIGR03377 glycerol3P_GlpA glyc 97.5 0.0019 4.1E-08 63.4 14.2 73 185-258 123-204 (516)
318 TIGR01292 TRX_reduct thioredox 97.5 0.0011 2.4E-08 59.7 11.7 35 76-110 140-174 (300)
319 COG2509 Uncharacterized FAD-de 97.5 0.0007 1.5E-08 63.4 9.8 45 200-245 186-231 (486)
320 PRK15317 alkyl hydroperoxide r 97.5 0.0011 2.3E-08 65.1 11.6 35 76-110 350-384 (517)
321 KOG1335 Dihydrolipoamide dehyd 97.5 0.00078 1.7E-08 61.7 9.1 36 76-111 38-73 (506)
322 KOG2960 Protein involved in th 97.4 0.00059 1.3E-08 57.5 7.6 36 77-112 76-113 (328)
323 PLN02676 polyamine oxidase 97.4 0.00019 4.2E-09 69.7 5.3 57 189-245 223-287 (487)
324 PRK05329 anaerobic glycerol-3- 97.4 0.00023 5E-09 67.6 5.6 34 77-110 2-35 (422)
325 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00016 3.4E-09 65.5 4.1 34 78-111 1-35 (296)
326 COG3075 GlpB Anaerobic glycero 97.4 0.00029 6.4E-09 63.2 5.3 36 77-112 2-37 (421)
327 cd02931 ER_like_FMN Enoate red 97.3 3.1E-05 6.7E-10 72.8 -1.2 40 7-46 329-368 (382)
328 COG1252 Ndh NADH dehydrogenase 97.3 0.00097 2.1E-08 62.6 8.6 47 198-249 220-268 (405)
329 TIGR02462 pyranose_ox pyranose 97.3 0.00045 9.8E-09 67.6 6.5 55 78-135 1-60 (544)
330 COG1251 NirB NAD(P)H-nitrite r 97.3 0.0008 1.7E-08 66.5 7.9 36 76-111 144-179 (793)
331 PTZ00363 rab-GDP dissociation 97.3 0.00035 7.5E-09 66.9 5.0 36 76-111 3-38 (443)
332 cd02930 DCR_FMN 2,4-dienoyl-Co 97.2 3.3E-05 7.1E-10 71.9 -2.2 40 7-46 300-339 (353)
333 KOG1276 Protoporphyrinogen oxi 97.2 0.00037 8E-09 64.6 4.6 38 74-111 8-47 (491)
334 TIGR01316 gltA glutamate synth 97.2 0.006 1.3E-07 58.8 13.2 35 76-110 271-305 (449)
335 KOG1336 Monodehydroascorbate/f 97.2 0.0035 7.5E-08 59.1 10.3 101 77-246 213-315 (478)
336 PRK11749 dihydropyrimidine deh 97.2 0.0041 8.9E-08 60.0 11.3 35 76-110 272-307 (457)
337 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0071 1.5E-07 56.4 12.5 36 205-244 208-243 (364)
338 PLN03000 amine oxidase 97.1 0.00057 1.2E-08 69.8 5.4 37 75-111 182-218 (881)
339 PRK02106 choline dehydrogenase 97.1 0.00068 1.5E-08 67.2 5.4 35 76-110 4-39 (560)
340 KOG0685 Flavin-containing amin 97.1 0.00075 1.6E-08 63.4 5.2 36 76-111 20-56 (498)
341 PRK12770 putative glutamate sy 97.0 0.0052 1.1E-07 57.2 10.4 35 76-110 171-206 (352)
342 KOG4716 Thioredoxin reductase 97.0 0.016 3.5E-07 52.5 12.7 37 75-111 17-53 (503)
343 PLN02976 amine oxidase 97.0 0.0012 2.6E-08 70.2 6.3 38 74-111 690-727 (1713)
344 COG0562 Glf UDP-galactopyranos 97.0 0.00099 2.1E-08 59.7 4.8 34 78-111 2-35 (374)
345 KOG1335 Dihydrolipoamide dehyd 96.9 0.0044 9.5E-08 56.9 8.5 100 76-245 210-315 (506)
346 PF08491 SE: Squalene epoxidas 96.9 0.0047 1E-07 54.8 8.6 74 233-309 2-75 (276)
347 PRK12831 putative oxidoreducta 96.9 0.016 3.5E-07 56.0 13.1 36 75-110 279-314 (464)
348 COG1206 Gid NAD(FAD)-utilizing 96.9 0.001 2.2E-08 59.8 3.8 35 77-111 3-37 (439)
349 TIGR03143 AhpF_homolog putativ 96.9 0.011 2.5E-07 58.4 11.7 35 76-110 142-176 (555)
350 COG3573 Predicted oxidoreducta 96.8 0.002 4.3E-08 58.1 5.4 37 76-112 4-40 (552)
351 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0019 4E-08 52.9 4.6 32 79-110 1-32 (157)
352 KOG1800 Ferredoxin/adrenodoxin 96.7 0.0023 5E-08 58.6 5.0 37 77-113 20-58 (468)
353 PRK12810 gltD glutamate syntha 96.7 0.026 5.7E-07 54.7 12.5 35 75-109 279-314 (471)
354 COG3486 IucD Lysine/ornithine 96.7 0.021 4.5E-07 53.1 11.0 154 75-250 3-163 (436)
355 TIGR01810 betA choline dehydro 96.7 0.0016 3.5E-08 64.1 4.1 32 79-110 1-33 (532)
356 PLN02172 flavin-containing mon 96.6 0.0065 1.4E-07 58.7 7.8 35 76-110 203-237 (461)
357 PRK12814 putative NADPH-depend 96.6 0.034 7.3E-07 56.2 13.0 36 75-110 321-357 (652)
358 TIGR03862 flavo_PP4765 unchara 96.5 0.015 3.3E-07 54.4 9.2 57 186-244 82-141 (376)
359 PF00743 FMO-like: Flavin-bind 96.5 0.0078 1.7E-07 59.1 7.6 38 74-111 180-217 (531)
360 COG2303 BetA Choline dehydroge 96.5 0.0034 7.3E-08 61.9 4.6 36 75-110 5-40 (542)
361 PRK01438 murD UDP-N-acetylmura 96.4 0.0045 9.7E-08 60.2 5.4 35 76-110 15-49 (480)
362 TIGR01372 soxA sarcosine oxida 96.4 0.034 7.3E-07 58.9 12.2 35 76-110 316-351 (985)
363 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0051 1.1E-07 51.6 5.0 33 79-111 1-33 (180)
364 PRK12778 putative bifunctional 96.3 0.042 9.1E-07 56.5 12.0 36 75-110 568-604 (752)
365 PLN02785 Protein HOTHEAD 96.2 0.0055 1.2E-07 60.9 4.6 36 75-111 53-88 (587)
366 PRK02705 murD UDP-N-acetylmura 96.1 0.0072 1.6E-07 58.3 4.9 33 79-111 2-34 (459)
367 PRK12779 putative bifunctional 96.1 0.05 1.1E-06 57.1 11.2 35 76-110 446-480 (944)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0079 1.7E-07 50.6 4.2 34 78-111 1-34 (185)
369 PRK14106 murD UDP-N-acetylmura 96.0 0.01 2.2E-07 57.1 5.4 35 76-110 4-38 (450)
370 COG1063 Tdh Threonine dehydrog 96.0 0.0087 1.9E-07 55.7 4.6 33 79-111 171-204 (350)
371 KOG4254 Phytoene desaturase [C 96.0 0.0071 1.5E-07 56.7 3.8 48 204-251 280-328 (561)
372 PF13241 NAD_binding_7: Putati 95.9 0.0078 1.7E-07 45.5 3.4 34 76-109 6-39 (103)
373 TIGR01470 cysG_Nterm siroheme 95.9 0.016 3.4E-07 49.7 5.5 35 76-110 8-42 (205)
374 PRK06719 precorrin-2 dehydroge 95.9 0.016 3.5E-07 47.4 5.3 33 75-107 11-43 (157)
375 KOG1346 Programmed cell death 95.9 0.031 6.7E-07 52.0 7.3 43 201-243 406-448 (659)
376 COG0569 TrkA K+ transport syst 95.9 0.012 2.5E-07 51.3 4.5 35 78-112 1-35 (225)
377 PRK07066 3-hydroxybutyryl-CoA 95.8 0.016 3.5E-07 53.0 5.4 35 77-111 7-41 (321)
378 KOG2495 NADH-dehydrogenase (ub 95.8 0.073 1.6E-06 49.8 9.5 44 205-250 290-337 (491)
379 PRK09853 putative selenate red 95.8 0.11 2.5E-06 54.4 12.0 36 75-110 666-703 (1019)
380 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.013 2.9E-07 53.5 4.6 34 78-111 3-36 (308)
381 PF02558 ApbA: Ketopantoate re 95.6 0.02 4.4E-07 46.2 4.9 31 80-110 1-31 (151)
382 PF01262 AlaDh_PNT_C: Alanine 95.6 0.024 5.2E-07 46.9 5.1 35 76-110 19-53 (168)
383 TIGR03315 Se_ygfK putative sel 95.5 0.15 3.3E-06 53.7 11.9 36 75-110 664-701 (1012)
384 TIGR01318 gltD_gamma_fam gluta 95.5 0.17 3.6E-06 49.1 11.5 36 76-111 281-317 (467)
385 KOG1336 Monodehydroascorbate/f 95.5 0.056 1.2E-06 51.2 7.8 40 200-242 140-179 (478)
386 PRK08293 3-hydroxybutyryl-CoA 95.5 0.02 4.2E-07 51.8 4.7 34 78-111 4-37 (287)
387 PRK06718 precorrin-2 dehydroge 95.5 0.027 5.9E-07 48.1 5.3 35 75-109 8-42 (202)
388 PRK09260 3-hydroxybutyryl-CoA 95.5 0.018 3.8E-07 52.1 4.4 34 78-111 2-35 (288)
389 PRK12769 putative oxidoreducta 95.5 0.15 3.3E-06 51.6 11.5 36 75-110 466-502 (654)
390 PF13738 Pyr_redox_3: Pyridine 95.5 0.022 4.8E-07 48.2 4.7 36 75-110 165-200 (203)
391 PRK06249 2-dehydropantoate 2-r 95.5 0.027 5.8E-07 51.6 5.6 35 76-110 4-38 (313)
392 PRK07819 3-hydroxybutyryl-CoA 95.5 0.023 5E-07 51.3 5.0 34 78-111 6-39 (286)
393 TIGR01317 GOGAT_sm_gam glutama 95.4 0.19 4.1E-06 49.0 11.6 37 75-111 281-318 (485)
394 PRK07530 3-hydroxybutyryl-CoA 95.3 0.029 6.3E-07 50.8 5.3 35 77-111 4-38 (292)
395 PRK13984 putative oxidoreducta 95.3 0.21 4.6E-06 50.0 11.9 32 76-107 417-454 (604)
396 PF01488 Shikimate_DH: Shikima 95.3 0.039 8.5E-07 43.8 5.3 35 76-110 11-46 (135)
397 PRK06035 3-hydroxyacyl-CoA deh 95.2 0.026 5.7E-07 51.1 4.6 34 78-111 4-37 (291)
398 PRK09424 pntA NAD(P) transhydr 95.1 0.032 6.9E-07 54.3 4.9 37 75-111 163-199 (509)
399 cd00401 AdoHcyase S-adenosyl-L 95.1 0.037 8.1E-07 52.4 5.2 37 75-111 200-236 (413)
400 PRK04148 hypothetical protein; 94.9 0.032 7E-07 44.1 3.8 35 76-111 16-50 (134)
401 PRK12921 2-dehydropantoate 2-r 94.8 0.04 8.7E-07 50.0 4.7 30 79-108 2-31 (305)
402 PRK06522 2-dehydropantoate 2-r 94.8 0.043 9.3E-07 49.7 4.8 32 79-110 2-33 (304)
403 TIGR00518 alaDH alanine dehydr 94.8 0.047 1E-06 51.2 5.2 35 76-110 166-200 (370)
404 PRK05708 2-dehydropantoate 2-r 94.8 0.043 9.4E-07 50.0 4.8 33 78-110 3-35 (305)
405 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.043 9.2E-07 52.3 4.8 34 78-111 4-37 (415)
406 KOG0024 Sorbitol dehydrogenase 94.7 0.042 9E-07 49.6 4.4 37 75-111 168-205 (354)
407 TIGR02354 thiF_fam2 thiamine b 94.7 0.057 1.2E-06 46.0 5.0 35 76-110 20-55 (200)
408 PRK05808 3-hydroxybutyryl-CoA 94.7 0.042 9E-07 49.5 4.4 34 78-111 4-37 (282)
409 PF00899 ThiF: ThiF family; I 94.7 0.05 1.1E-06 43.1 4.4 35 77-111 2-37 (135)
410 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.071 1.5E-06 44.1 5.1 36 75-110 42-78 (168)
411 KOG2495 NADH-dehydrogenase (ub 94.4 0.36 7.8E-06 45.4 9.8 39 73-111 51-89 (491)
412 PRK06130 3-hydroxybutyryl-CoA 94.4 0.059 1.3E-06 49.2 4.7 34 78-111 5-38 (311)
413 cd01075 NAD_bind_Leu_Phe_Val_D 94.3 0.087 1.9E-06 44.9 5.3 36 75-110 26-61 (200)
414 TIGR00936 ahcY adenosylhomocys 94.3 0.072 1.6E-06 50.3 5.2 37 75-111 193-229 (406)
415 COG1004 Ugd Predicted UDP-gluc 94.3 0.056 1.2E-06 50.2 4.3 34 78-111 1-34 (414)
416 PRK14619 NAD(P)H-dependent gly 94.3 0.084 1.8E-06 48.2 5.5 35 77-111 4-38 (308)
417 COG3486 IucD Lysine/ornithine 94.3 0.5 1.1E-05 44.2 10.3 48 203-250 293-346 (436)
418 PLN02545 3-hydroxybutyryl-CoA 94.3 0.073 1.6E-06 48.2 5.0 34 78-111 5-38 (295)
419 PRK08229 2-dehydropantoate 2-r 94.3 0.062 1.3E-06 49.7 4.7 33 78-110 3-35 (341)
420 PRK08306 dipicolinate synthase 94.2 0.082 1.8E-06 48.0 5.3 36 76-111 151-186 (296)
421 PF00670 AdoHcyase_NAD: S-aden 94.2 0.074 1.6E-06 43.4 4.4 36 76-111 22-57 (162)
422 PRK03369 murD UDP-N-acetylmura 94.0 0.083 1.8E-06 51.5 5.2 35 76-110 11-45 (488)
423 PRK01710 murD UDP-N-acetylmura 94.0 0.083 1.8E-06 51.1 5.2 34 77-110 14-47 (458)
424 PF03446 NAD_binding_2: NAD bi 93.9 0.11 2.3E-06 42.8 4.9 34 78-111 2-35 (163)
425 PRK02472 murD UDP-N-acetylmura 93.9 0.09 2E-06 50.5 5.1 35 76-110 4-38 (447)
426 PRK05329 anaerobic glycerol-3- 93.8 0.47 1E-05 45.3 9.8 40 204-243 275-317 (422)
427 TIGR03026 NDP-sugDHase nucleot 93.8 0.075 1.6E-06 50.6 4.4 33 79-111 2-34 (411)
428 PRK05476 S-adenosyl-L-homocyst 93.8 0.11 2.3E-06 49.5 5.3 36 76-111 211-246 (425)
429 PF13478 XdhC_C: XdhC Rossmann 93.8 0.082 1.8E-06 42.1 3.8 32 80-111 1-32 (136)
430 TIGR03366 HpnZ_proposed putati 93.8 0.14 3E-06 45.9 5.7 35 76-110 120-155 (280)
431 TIGR02853 spore_dpaA dipicolin 93.7 0.11 2.4E-06 46.9 5.1 37 75-111 149-185 (287)
432 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.7 0.095 2.1E-06 51.2 4.9 35 77-111 5-39 (503)
433 PRK04308 murD UDP-N-acetylmura 93.7 0.12 2.5E-06 49.8 5.5 36 76-111 4-39 (445)
434 PRK14620 NAD(P)H-dependent gly 93.7 0.1 2.2E-06 48.0 4.9 32 79-110 2-33 (326)
435 PF01593 Amino_oxidase: Flavin 93.7 0.18 3.9E-06 47.3 6.7 47 200-247 222-268 (450)
436 PRK14618 NAD(P)H-dependent gly 93.6 0.11 2.3E-06 47.9 4.9 33 78-110 5-37 (328)
437 TIGR01763 MalateDH_bact malate 93.6 0.13 2.8E-06 46.9 5.3 33 78-110 2-35 (305)
438 PRK07531 bifunctional 3-hydrox 93.6 0.094 2E-06 51.2 4.7 34 78-111 5-38 (495)
439 PRK12549 shikimate 5-dehydroge 93.6 0.13 2.8E-06 46.4 5.2 35 76-110 126-161 (284)
440 PRK00094 gpsA NAD(P)H-dependen 93.5 0.12 2.5E-06 47.4 5.0 32 79-110 3-34 (325)
441 COG0771 MurD UDP-N-acetylmuram 93.5 0.099 2.2E-06 49.9 4.6 36 77-112 7-42 (448)
442 PRK15116 sulfur acceptor prote 93.5 0.13 2.8E-06 45.8 5.1 36 76-111 29-65 (268)
443 PF01593 Amino_oxidase: Flavin 93.5 0.076 1.6E-06 49.9 3.9 25 87-111 1-25 (450)
444 PRK08268 3-hydroxy-acyl-CoA de 93.5 0.14 2.9E-06 50.2 5.6 36 76-111 6-41 (507)
445 cd05292 LDH_2 A subgroup of L- 93.5 0.12 2.7E-06 47.1 5.0 33 79-111 2-36 (308)
446 PRK12475 thiamine/molybdopteri 93.5 0.13 2.7E-06 47.7 5.1 35 76-110 23-58 (338)
447 TIGR00561 pntA NAD(P) transhyd 93.5 0.13 2.8E-06 50.0 5.3 36 76-111 163-198 (511)
448 COG3634 AhpF Alkyl hydroperoxi 93.4 0.072 1.6E-06 48.6 3.2 38 74-111 351-388 (520)
449 PRK05562 precorrin-2 dehydroge 93.4 0.15 3.3E-06 44.1 5.1 36 74-109 22-57 (223)
450 KOG1238 Glucose dehydrogenase/ 93.4 0.099 2.2E-06 51.4 4.3 39 74-112 54-93 (623)
451 COG0446 HcaD Uncharacterized N 93.3 0.48 1E-05 44.5 9.0 42 203-247 68-109 (415)
452 TIGR00562 proto_IX_ox protopor 93.3 0.27 5.8E-06 47.4 7.4 34 78-111 3-40 (462)
453 cd01078 NAD_bind_H4MPT_DH NADP 93.3 0.17 3.8E-06 42.7 5.3 34 76-109 27-61 (194)
454 PRK04690 murD UDP-N-acetylmura 93.3 0.13 2.8E-06 49.9 5.1 35 76-110 7-41 (468)
455 PLN02494 adenosylhomocysteinas 93.3 0.15 3.3E-06 48.8 5.3 37 75-111 252-288 (477)
456 TIGR02356 adenyl_thiF thiazole 93.1 0.17 3.7E-06 43.2 5.0 36 76-111 20-56 (202)
457 PLN02676 polyamine oxidase 93.1 0.27 5.8E-06 47.9 7.0 36 76-111 25-61 (487)
458 COG0492 TrxB Thioredoxin reduc 93.1 1.3 2.8E-05 40.4 10.9 36 76-111 142-177 (305)
459 PRK12809 putative oxidoreducta 93.1 1.4 3.1E-05 44.5 12.3 36 75-110 449-485 (639)
460 PF06100 Strep_67kDa_ant: Stre 93.0 0.14 3.1E-06 49.0 4.7 35 77-111 2-40 (500)
461 cd05191 NAD_bind_amino_acid_DH 93.0 0.3 6.6E-06 35.3 5.5 34 75-108 21-55 (86)
462 TIGR02437 FadB fatty oxidation 93.0 0.15 3.3E-06 52.0 5.2 37 75-111 311-347 (714)
463 cd05311 NAD_bind_2_malic_enz N 92.9 0.17 3.6E-06 44.0 4.8 35 76-110 24-61 (226)
464 PRK05675 sdhA succinate dehydr 92.9 2 4.3E-05 42.9 12.9 57 190-246 126-191 (570)
465 PRK11730 fadB multifunctional 92.9 0.16 3.4E-06 51.9 5.2 35 77-111 313-347 (715)
466 COG1064 AdhP Zn-dependent alco 92.8 0.27 5.9E-06 45.1 6.1 38 74-111 164-201 (339)
467 PRK07417 arogenate dehydrogena 92.8 0.16 3.5E-06 45.6 4.6 32 79-110 2-33 (279)
468 PF02254 TrkA_N: TrkA-N domain 92.8 0.22 4.8E-06 38.0 4.8 32 80-111 1-32 (116)
469 PRK00141 murD UDP-N-acetylmura 92.7 0.19 4.1E-06 48.8 5.4 35 76-110 14-48 (473)
470 TIGR02355 moeB molybdopterin s 92.7 0.2 4.3E-06 44.0 5.0 36 76-111 23-59 (240)
471 COG1748 LYS9 Saccharopine dehy 92.7 0.17 3.6E-06 47.5 4.6 34 78-111 2-36 (389)
472 TIGR02964 xanthine_xdhC xanthi 92.7 0.22 4.8E-06 43.9 5.2 36 76-111 99-134 (246)
473 COG0686 Ald Alanine dehydrogen 92.6 0.12 2.6E-06 46.4 3.5 37 75-111 166-202 (371)
474 PRK05690 molybdopterin biosynt 92.6 0.22 4.8E-06 43.9 5.2 36 76-111 31-67 (245)
475 cd05291 HicDH_like L-2-hydroxy 92.6 0.21 4.5E-06 45.6 5.1 34 78-111 1-36 (306)
476 PTZ00075 Adenosylhomocysteinas 92.6 0.22 4.8E-06 47.9 5.4 37 75-111 252-288 (476)
477 PRK08644 thiamine biosynthesis 92.6 0.22 4.8E-06 42.8 5.0 36 76-111 27-63 (212)
478 PTZ00082 L-lactate dehydrogena 92.5 0.24 5.1E-06 45.6 5.4 35 77-111 6-41 (321)
479 PRK00066 ldh L-lactate dehydro 92.5 0.28 6.1E-06 44.9 5.9 36 75-110 4-41 (315)
480 TIGR02730 carot_isom carotene 92.5 0.5 1.1E-05 46.1 8.0 35 78-112 1-35 (493)
481 PRK07688 thiamine/molybdopteri 92.4 0.22 4.8E-06 46.1 5.1 35 76-110 23-58 (339)
482 PRK00421 murC UDP-N-acetylmura 92.4 0.19 4.2E-06 48.5 4.9 35 76-110 6-41 (461)
483 cd00757 ThiF_MoeB_HesA_family 92.4 0.24 5.3E-06 43.1 5.0 36 76-111 20-56 (228)
484 TIGR01915 npdG NADPH-dependent 92.3 0.23 5E-06 42.9 4.9 32 79-110 2-34 (219)
485 TIGR02441 fa_ox_alpha_mit fatt 92.3 0.21 4.6E-06 51.2 5.3 37 75-111 333-369 (737)
486 TIGR00507 aroE shikimate 5-deh 92.2 0.26 5.6E-06 44.1 5.2 35 76-110 116-150 (270)
487 PRK01368 murD UDP-N-acetylmura 92.2 0.23 5E-06 48.0 5.1 33 76-109 5-37 (454)
488 PRK02006 murD UDP-N-acetylmura 92.2 0.22 4.7E-06 48.7 5.0 34 77-110 7-40 (498)
489 KOG2304 3-hydroxyacyl-CoA dehy 92.2 0.17 3.7E-06 43.4 3.6 36 76-111 10-45 (298)
490 PRK00683 murD UDP-N-acetylmura 92.2 0.22 4.7E-06 47.6 4.9 35 77-111 3-37 (418)
491 TIGR01505 tartro_sem_red 2-hyd 92.2 0.17 3.8E-06 45.7 4.0 33 79-111 1-33 (291)
492 PRK06223 malate dehydrogenase; 92.1 0.26 5.7E-06 44.9 5.2 34 78-111 3-37 (307)
493 cd01065 NAD_bind_Shikimate_DH 92.1 0.32 7E-06 39.1 5.2 35 76-110 18-53 (155)
494 cd01483 E1_enzyme_family Super 92.1 0.29 6.2E-06 39.1 4.8 33 79-111 1-34 (143)
495 PRK08328 hypothetical protein; 92.0 0.28 6.1E-06 42.8 5.0 36 76-111 26-62 (231)
496 PRK15057 UDP-glucose 6-dehydro 91.9 0.22 4.8E-06 47.0 4.5 32 79-111 2-33 (388)
497 PRK12548 shikimate 5-dehydroge 91.9 0.28 6.2E-06 44.3 5.1 35 76-110 125-160 (289)
498 cd01487 E1_ThiF_like E1_ThiF_l 91.9 0.27 5.8E-06 40.9 4.5 32 79-110 1-33 (174)
499 PF02826 2-Hacid_dh_C: D-isome 91.8 0.4 8.6E-06 40.0 5.6 39 73-111 32-70 (178)
500 COG1250 FadB 3-hydroxyacyl-CoA 91.8 0.24 5.2E-06 44.9 4.4 35 77-111 3-37 (307)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=2.4e-34 Score=281.26 Aligned_cols=308 Identities=72% Similarity=1.120 Sum_probs=233.6
Q ss_pred CccccccCCCCCcccc--ccCCCCCCccCCCCCcccccCccccccccccCCCCccchhHhHHhHHhcCCCCC----CCCC
Q 020277 1 MVSSMFYNSVNLSTTV--FSRTHFPVPVYKHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNN----SDSE 74 (328)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~a~~~~~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 74 (328)
||++.+++|.+.+..+ +++.++|.++......++.++..|+..-....... .+.....+.....+..+ ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (668)
T PLN02927 1 MGSTLFCYSINPSPSKLDFTRTHVFSPVAKQFYLDLSSFSGKPGGGLSGFRSR--KALLGVKAATALVEKEEKREAVTEK 78 (668)
T ss_pred CCccccccCCCccchhhhccccCCCCcccccchhhhccccccCccccccccch--hhhcchhhhhhhccccccccccccc
Confidence 8999999999999999 99999999999999999999999876211111111 12111222211111110 0123
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
.+..+|+||||||+||++|+.|+++|++|+|||+.+...+..|.+++++.++++++++|++++.++.+++.+.+......
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 56689999999999999999999999999999998644445555556799999999999999777778887765543333
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecC
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad 234 (328)
+..+.+...+.+...++........+.+..+.++|.+|.+.|.+.++...++++++|++++.+++++++++.+|+++++|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aD 238 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGD 238 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcC
Confidence 33333444566666655433223345566678999999999999988777889999999999999999999999999999
Q ss_pred EEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEeCCC
Q 020277 235 LLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEPA 310 (328)
Q Consensus 235 ~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~~~ 310 (328)
+||+|||+||.+|+.+++...+.|+++.+|+++.+..+.+........|.+.+.+++.+|.++++++|+++...+.
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~ 314 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPA 314 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCc
Confidence 9999999999999999888888999999999998765544334445677888899999999999888887776653
No 2
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.94 E-value=3.7e-25 Score=209.21 Aligned_cols=219 Identities=24% Similarity=0.321 Sum_probs=156.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
++|+||||||+||++|+.|+++|++|+|+|+.+... . .+.++.+.|+++++|+++ |+++++...+.... .+ .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~-~---~g~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~~-~~-~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS-E---VGAGLQLAPNAMRHLERL--GVADRLSGTGVTPK-AL-Y 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC-c---CCccceeChhHHHHHHHC--CChHHHhhcccCcc-eE-E
Confidence 789999999999999999999999999999986432 1 234689999999999999 88888876544332 11 1
Q ss_pred cccCCCCceEEeecCCchh-hhcCCCeEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEEEEEe---cCcE
Q 020277 158 LVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE---NGQC 230 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~ 230 (328)
+.++.........+..... ...+.++ ..++|.+|.+.|.+++. ...++++++|++++.+++++++++. ++++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~ 153 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPY-IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET 153 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCc-eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE
Confidence 2222222212211111111 1123343 57899999999998862 3458899999999988888888773 3357
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccC--CCcc-----cccceEEEecCCeEEEEEeCCCCeEEEE
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFV--PADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~g~~~~~~~~P~~~g~~~~~ 303 (328)
++||+||+|||.+|.+|+.+. ...+.|+++.+|++.++.. +... .......|++++.++++||++++..+++
T Consensus 154 ~~adlvIgADG~~S~vR~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAG-FSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNF 232 (400)
T ss_pred EecCEEEECCCccHhHHhhcC-CCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEE
Confidence 999999999999999999984 4667888999999886431 1111 1123466789999999999998875555
Q ss_pred EEE
Q 020277 304 AFN 306 (328)
Q Consensus 304 ~~~ 306 (328)
+..
T Consensus 233 ~~~ 235 (400)
T PRK06475 233 VAI 235 (400)
T ss_pred EEE
Confidence 443
No 3
>PRK06753 hypothetical protein; Provisional
Probab=99.94 E-value=5.3e-25 Score=206.22 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=160.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
.+|+||||||+||++|+.|+++|++|+|+|+.+.... .+.++.+.+++++.|+.+ |+++.+...+..... +.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~~~-~~- 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE----VGAGIGIGDNVIKKLGNH--DLAKGIKNAGQILST-MN- 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc----cccceeeChHHHHHHHhc--ChHHHHHhcCCcccc-ee-
Confidence 3799999999999999999999999999999975422 223589999999999998 788887654432211 11
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEE
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLV 237 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV 237 (328)
+++ ..+..+...+. ..+ +..+.++|..|.+.|.+.+....++++++|++++.+++++++++.+|+++++|+||
T Consensus 73 ~~~-~~g~~~~~~~~-----~~~-~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi 145 (373)
T PRK06753 73 LLD-DKGTLLNKVKL-----KSN-TLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI 145 (373)
T ss_pred EEc-CCCCEEeeccc-----ccC-CccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence 222 22332222221 111 22468999999999999886666899999999998888999999999999999999
Q ss_pred EccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 238 GADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 238 ~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
+|||.+|.+|+.+.....+.+.++.+|++.......... .....+++++++++++|+++++++|++...
T Consensus 146 gadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 214 (373)
T PRK06753 146 GADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLP-DCAKEYWGTKGRFGIVPLLNNQAYWFITIN 214 (373)
T ss_pred ECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCc-cceEEEEcCCCEEEEEEcCCCeEEEEEEec
Confidence 999999999999976667788888889887543221111 123345566778889999999988887664
No 4
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.94 E-value=1.6e-24 Score=205.87 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=154.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.+|+|||||++||++|+.|+++| ++|+|||+.+.. +..+.++.+.|+++++|+++ |+.+.+...+........
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~----~~~G~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~ 74 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF----GEVGAGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQ 74 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC----CCCccceeeCccHHHHHHHc--CChhHHHHHhcCCCccCc
Confidence 37999999999999999999998 599999998652 22345699999999999999 666666554321111101
Q ss_pred c----cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 157 G----LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 157 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
. +.++........ . ...+.+ ...++|.+|.+.|.+.+....++++++|++++.++++|++++.+|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~-----~~~~~~-~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 147 (414)
T TIGR03219 75 DIWFEWRNGSDASYLGA-T-----IAPGVG-QSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYR 147 (414)
T ss_pred ceeEEEEecCccceeee-e-----ccccCC-cccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEE
Confidence 0 111111111110 0 001112 1468999999999998866668899999999998889999999999999
Q ss_pred cCEEEEccCCCchhhhhhcC-----CCCceEeeeEEEEEeeccCC--Cc-----cc---ccceEEEecCCeEEEEEeCCC
Q 020277 233 GDLLVGADGIWSKVRKNLFG-----PQEAIFSGYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGA 297 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~-----~~---~~~~~~~~g~~~~~~~~P~~~ 297 (328)
+|+||+|||.+|.+|+.+.+ ...+.|+++.+|+++++... .. .+ .....+|+++++++++||+.+
T Consensus 148 ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (414)
T TIGR03219 148 CDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQ 227 (414)
T ss_pred eeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCC
Confidence 99999999999999998863 24578899999998864211 00 00 112357788999999999999
Q ss_pred CeE-EEEEEEe
Q 020277 298 GKM-QWYAFNK 307 (328)
Q Consensus 298 g~~-~~~~~~~ 307 (328)
|.. +|+.+..
T Consensus 228 g~~~~~~~~~~ 238 (414)
T TIGR03219 228 GRLINVVAFIS 238 (414)
T ss_pred CcEEEEEEEEc
Confidence 984 4444443
No 5
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.93 E-value=4.9e-24 Score=201.27 Aligned_cols=221 Identities=28% Similarity=0.423 Sum_probs=160.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
++.+|+||||||+||++|..|++.|++|+|+|+.+... ..+.++.++|+++++|+++ |+++.+...+..... +
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~----~~g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~~~-~ 75 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG----EIGAGIQLGPNAFSALDAL--GVGEAARQRAVFTDH-L 75 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc----cccceeeeCchHHHHHHHc--CChHHHHhhccCCcc-e
Confidence 45799999999999999999999999999999986532 2234699999999999999 777877664432211 1
Q ss_pred cccccCCCCceEEeecCCc-hhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 156 NGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
.+.+...+......+... .....+.++ ..++|.+|.+.|.+.+ +...++++++|++++.+++++++++.+|+++
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 76 -TMMDAVDAEEVVRIPTGQAFRARFGNPY-AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRW 153 (396)
T ss_pred -EEEeCCCCCEEEEeccchhHHHhcCCcE-EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEE
Confidence 122222344333333221 112334444 5789999999998875 3345888999999998888899999999899
Q ss_pred ecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeecc--CCCcccccceEEEecCCeEEEEEeCCCCe-EEEEEEE
Q 020277 232 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADF--VPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFN 306 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~P~~~g~-~~~~~~~ 306 (328)
+||+||+|||.+|.+|+.+.+. .+.+.++..|++.++. .+.........+|.+++.+++.+|+.+|. +++++.+
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~ 230 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTF 230 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEE
Confidence 9999999999999999988655 5677888888877653 12222222345677888899999999887 4444444
No 6
>PRK05868 hypothetical protein; Validated
Probab=99.93 E-value=1e-23 Score=197.38 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=147.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
++|+||||||+|+++|+.|+++|++|+|||+.+... .. +.++.+.++++++|+++ |+++.+.+.+..... +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~---g~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~~~-~~- 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PG---GQAIDVRGPALDVLERM--GLLAAAQEHKTRIRG-AS- 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CC---ceeeeeCchHHHHHHhc--CCHHHHHhhccCccc-eE-
Confidence 489999999999999999999999999999986532 22 23588999999999999 788888654432211 11
Q ss_pred cccCCCCceEEeecCCc-hhhhcCCCeEEEecHHHHHHHHHHhcC-CceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 158 LVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
+.+ ..+..+....... .....+.+ .+.+.|.+|.+.|.+.+. ...++++++|++++.+++++++++++|++++||+
T Consensus 74 ~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 74 FVD-RDGNELFRDTESTPTGGPVNSP-DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEe-CCCCEEeecccccccCCCCCCc-eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 222 2233222211100 00111222 357899999999877653 3448899999999988889999999999999999
Q ss_pred EEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEE-EecCCeEEEEEeCCCCe-EEEEEEEe
Q 020277 236 LVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGK-MQWYAFNK 307 (328)
Q Consensus 236 VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~P~~~g~-~~~~~~~~ 307 (328)
||+|||.+|.+|+.+++...........++.+... +.......... +++++.++++||+.++. .+.++.+.
T Consensus 152 vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
T PRK05868 152 VIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTV-PNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFM 224 (372)
T ss_pred EEECCCCCchHHHHhcCCcccceeecceEEEEEEc-CCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEe
Confidence 99999999999999976554333333333333322 22112222333 46888899999998764 33333333
No 7
>PRK07588 hypothetical protein; Provisional
Probab=99.93 E-value=7.9e-24 Score=199.57 Aligned_cols=219 Identities=18% Similarity=0.274 Sum_probs=153.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
.+|+||||||+||++|+.|+++|++|+|+|+.+... .. +.++.++++++++|+++ |+++.+.+.+..... +.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~---g~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~-~~- 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TG---GYMVDFWGVGYEVAKRM--GITDQLREAGYQIEH-VR- 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CC---CeEEeccCcHHHHHHHc--CCHHHHHhccCCccc-eE-
Confidence 479999999999999999999999999999986432 22 23478899999999999 788888765433221 11
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC-ceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
+++ ..+.....++........+.++ +.++|.+|.+.|.+++.. ..++++++|++++.+++++++++++|+++++|+|
T Consensus 73 ~~~-~~g~~~~~~~~~~~~~~~g~~~-~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~v 150 (391)
T PRK07588 73 SVD-PTGRRKADLNVDSFRRMVGDDF-TSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLV 150 (391)
T ss_pred EEc-CCCCEEEEecHHHccccCCCce-EEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEE
Confidence 222 2344333333221112223333 589999999999887644 5589999999999989999999999999999999
Q ss_pred EEccCCCchhhhhhcCCCC--ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 237 VGADGIWSKVRKNLFGPQE--AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 237 V~AdG~~S~vr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
|+|||.+|.+|+.+.+... ..+.+...+......... ........|.+++.+++.+|+.+++..+++...
T Consensus 151 IgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~ 222 (391)
T PRK07588 151 IGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFR 222 (391)
T ss_pred EECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEE
Confidence 9999999999998754432 344554444433221111 112224456678889999999988855554444
No 8
>PRK07236 hypothetical protein; Provisional
Probab=99.93 E-value=3.6e-24 Score=201.53 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=154.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
++..+|+||||||+||++|..|+++|++|+|+|+.+..... .++++.++|+++++|+++ |+.+.. ..+.....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~---~g~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~~- 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG---RGAGIVLQPELLRALAEA--GVALPA-DIGVPSRE- 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC---CCceeEeCHHHHHHHHHc--CCCccc-ccccCccc-
Confidence 35689999999999999999999999999999998643222 224588999999999999 444432 11111111
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecC
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad 234 (328)
. .+.+ ..+..+...+ .+. ..+.+..+.+.|.+.++...++++++|++++.+++++++++.+|++++||
T Consensus 77 ~-~~~~-~~g~~~~~~~---------~~~-~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 144 (386)
T PRK07236 77 R-IYLD-RDGRVVQRRP---------MPQ-TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETAD 144 (386)
T ss_pred e-EEEe-CCCCEeeccC---------CCc-cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeC
Confidence 0 1111 2222221111 111 23567889999988887667999999999999888999999999999999
Q ss_pred EEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccC--CCcc---cccceEEEecCCeEEEEEeCCCC---------eE
Q 020277 235 LLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFV--PADI---ESVGYRVFLGHKQYFVSSDVGAG---------KM 300 (328)
Q Consensus 235 ~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~P~~~g---------~~ 300 (328)
+||+|||.+|.+|+.+.+...+.|.++.+|++++... +... ....+..+++++.+++.||++++ .+
T Consensus 145 ~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (386)
T PRK07236 145 LLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRY 224 (386)
T ss_pred EEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEE
Confidence 9999999999999999777788899999999886431 1111 11235567788888999998742 25
Q ss_pred EEEEEEeC
Q 020277 301 QWYAFNKE 308 (328)
Q Consensus 301 ~~~~~~~~ 308 (328)
+|+++...
T Consensus 225 ~~~~~~~~ 232 (386)
T PRK07236 225 NWVWYRNA 232 (386)
T ss_pred EEEEEecC
Confidence 56655544
No 9
>PRK07538 hypothetical protein; Provisional
Probab=99.93 E-value=7.6e-24 Score=201.07 Aligned_cols=219 Identities=27% Similarity=0.410 Sum_probs=154.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
.+|+||||||+||++|+.|+++|++|+|||+.+... . .+.++.+.|+++++|+++ |+++.+...+...... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~---~g~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~~~~--~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-P---LGVGINLLPHAVRELAEL--GLLDALDAIGIRTREL--A 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-c---cCcceeeCchHHHHHHHC--CCHHHHHhhCCCCcce--E
Confidence 379999999999999999999999999999986432 1 234689999999999999 7888887654332211 1
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc----CCceEecCCeEEEEEEeCCeEEEEEecC-----
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----- 228 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~----~~~~i~~~~~v~~i~~~~~~v~v~~~~g----- 228 (328)
+++ ..+..+..... ........+ .+.++|.+|++.|.+++ +...++++++|++++.+++++.+.+.++
T Consensus 73 ~~~-~~g~~~~~~~~-~~~~~~~~~-~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 73 YFN-RHGQRIWSEPR-GLAAGYDWP-QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDL 149 (413)
T ss_pred EEc-CCCCEEeeccC-CcccCCCCc-eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCcc
Confidence 221 22332222111 111112233 35799999999998764 4455899999999998887777766553
Q ss_pred cEEecCEEEEccCCCchhhhhhcCCC-CceEeeeEEEEEeeccCCCcccccceEEEec-CCeEEEEEeCCCC-------e
Q 020277 229 QCYAGDLLVGADGIWSKVRKNLFGPQ-EAIFSGYTCYTGIADFVPADIESVGYRVFLG-HKQYFVSSDVGAG-------K 299 (328)
Q Consensus 229 ~~i~ad~VV~AdG~~S~vr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~P~~~g-------~ 299 (328)
.+++||+||+|||.+|.+|+.+.+.. .+.|.+.+.|++..+..+ .......++++ ++.++++||+.++ .
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~ 227 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPP--FLTGRSMVMAGHLDGKLVVYPISEPVDADGRQL 227 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcc--ccCCCcEEEEcCCCCEEEEEECCCCcccCCceE
Confidence 38999999999999999999987555 678889999998865322 11112223444 4667889998764 4
Q ss_pred EEEEEEEeCC
Q 020277 300 MQWYAFNKEP 309 (328)
Q Consensus 300 ~~~~~~~~~~ 309 (328)
++|++....+
T Consensus 228 ~~w~~~~~~~ 237 (413)
T PRK07538 228 INWVAEVRVD 237 (413)
T ss_pred EEEEEEEcCC
Confidence 7787776544
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.93 E-value=2.3e-24 Score=202.82 Aligned_cols=218 Identities=24% Similarity=0.261 Sum_probs=153.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.++|+||||||+||++|..|++.|++|+|+|+.+......+ .++.++++++++|+++ |+.+.+...+......+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~---r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSPNALRALERL--GLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc---eeeeecHhHHHHHHHc--CChhhhhhccCCceeeEE
Confidence 47899999999999999999999999999999833222222 4589999999999999 655777665543332221
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEe-cCcEEe
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE-NGQCYA 232 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~i~ 232 (328)
+.+ .+.....++.... .+.+..+.+.|.+|.+.|.+++ +...++++++|+.++.+++.++++++ +|++++
T Consensus 77 -~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 77 -VDD--GGRRLLIFDAAEL---GRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred -Eec--CCceeEEeccccc---CCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 111 1212333333221 1244568999999999999986 33568999999999999999999888 999999
Q ss_pred cCEEEEccCCCchhhhhhcCCC-CceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQ-EAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
||+||+|||.+|.+|+.+.... ......+..+...... +.+.......++.+.+.+.++|++++....++...
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 224 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEP--EEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLP 224 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeec--CCCCCCeEEEEecCCCceEEEecCCCceeEEEECC
Confidence 9999999999999999996122 2212333444333332 12223334557778888999999965544433333
No 11
>PRK08013 oxidoreductase; Provisional
Probab=99.92 E-value=2.9e-23 Score=196.29 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCc--cccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
.++|+||||||+|+++|+.|+++|++|+|+|+.+......+. ......++|+++++|+++ |+++.+...+......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL--GVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc--CCchhhhhhcCccccE
Confidence 479999999999999999999999999999998753321121 112356899999999999 8888887643222222
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCC-eEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEEEEEecCcE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQC 230 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (328)
+. +++... .....++. ...+.+ .++.++|..|++.|.+.+. ...++++++|++++.+++++++++.+|++
T Consensus 81 ~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~ 154 (400)
T PRK08013 81 ME-VWDKDS-FGRIAFDD----QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSM 154 (400)
T ss_pred EE-EEeCCC-CceEEEcc----cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCE
Confidence 21 222111 11112221 111222 2578999999999988762 34588899999999988899999999999
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCe-EEEEEEEe
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFNK 307 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~-~~~~~~~~ 307 (328)
++||+||+|||.+|.+|+.+..........+.++.+.++... .... ....++.++++++++|++++. ..+++..+
T Consensus 155 i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~ 230 (400)
T PRK08013 155 LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-PHDA-VARQVFHGDGILAFLPLSDPHLCSIVWSLS 230 (400)
T ss_pred EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-CCCC-EEEEEEcCCCCEEEEECCCCCeEEEEEEcC
Confidence 999999999999999999985443323233344444433211 1111 122334455578889998765 44554443
No 12
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.92 E-value=6.6e-23 Score=192.17 Aligned_cols=214 Identities=17% Similarity=0.134 Sum_probs=147.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
.+|+||||||+|+++|+.|++.|++|+|+|+.+.........+.++.++|+++++|+++ |+++.+.+..... ..+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~-~~~~- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI--DIWEELEKFVAEM-QDIY- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC--CcHHHHHhhcCCC-cEEE-
Confidence 58999999999999999999999999999987432111111234589999999999999 8888886543221 1221
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEEEEEecCcEEecC
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad 234 (328)
+++ ..+.....++.. ...++++.++|.+|.+.|.+++. ...++++++++++..+++++++.+.++ +++||
T Consensus 78 ~~~-~~g~~~~~~~~~-----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ad 150 (374)
T PRK06617 78 VVD-NKASEILDLRND-----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCN 150 (374)
T ss_pred EEE-CCCceEEEecCC-----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeC
Confidence 222 233333444321 12234689999999999998763 345788999999999889999999776 89999
Q ss_pred EEEEccCCCchhhhhhcCCCC-ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCe-EEEEEEE
Q 020277 235 LLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFN 306 (328)
Q Consensus 235 ~VV~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~-~~~~~~~ 306 (328)
+||+|||.+|.+|+.++.... ..| +.++...++... .... ....++.+.+.++++|++++. ..+++..
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y--~~~~~~~v~~~~-~~~~-~~~~~~~~~g~~~~lPl~~~~~~~~vw~~ 220 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY--QTALTFNIKHEK-PHEN-CAMEHFLPLGPFALLPLKDQYASSVIWST 220 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC--CeEEEEEEeccC-CCCC-EEEEEecCCCCEEEeECCCCCeEEEEEeC
Confidence 999999999999998865432 333 455555543211 1111 122344455668889999885 3344333
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.92 E-value=7e-23 Score=193.99 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=151.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcccc-CCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.++|+||||||+|+++|+.|++.|++|+|+|+...... .......++.++++++++|+++ |+++.+.+........+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL--GAWQGIEARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC--CchhhhhhhhCCcccEE
Confidence 57999999999999999999999999999999632111 0000112367999999999999 88899876432222222
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
. +++.. ......++.. .....++++.+.+..|++.|.+++. ...++++++|++++.+++.+++++.+|++++
T Consensus 82 ~-~~~~~-~~~~~~~~~~---~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 82 E-VWEQD-SFARIEFDAE---SMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred E-EEeCC-CCceEEEecc---ccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 1 22211 1111222211 0111124578899999999988752 3458889999999988888999999999999
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCe-EEEEEEE
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFN 306 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~-~~~~~~~ 306 (328)
||+||+|||.+|.+|+.+.........++.++.+.+.... ........++++++.++++|+.++. ++|++..
T Consensus 157 a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~ 229 (405)
T PRK08850 157 AKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD--PHNSVARQIFTPQGPLAFLPMSEPNMSSIVWST 229 (405)
T ss_pred eCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC--CCCCEEEEEEcCCCceEEEECCCCCeEEEEEEC
Confidence 9999999999999999986554444456677776654322 1122334577888888999998754 4554444
No 14
>PRK06847 hypothetical protein; Provisional
Probab=99.91 E-value=1.5e-22 Score=189.72 Aligned_cols=220 Identities=29% Similarity=0.385 Sum_probs=160.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
+.++|+||||||+||++|..|++.|++|+|+|+.+.... .+.++.+.++++++|+++ ++++.+.+.+..... +
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~~~-~ 75 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITLQGNALRALREL--GVLDECLEAGFGFDG-V 75 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc----CCceeeecHHHHHHHHHc--CCHHHHHHhCCCccc-e
Confidence 357999999999999999999999999999999865321 234689999999999999 778888765432211 1
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
.+++ ..+..+..++.... ....++....++|.+|.+.|.+.+. ...++++++|++++.+++++++.+.+|+++++
T Consensus 76 -~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 152 (375)
T PRK06847 76 -DLFD-PDGTLLAELPTPRL-AGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRY 152 (375)
T ss_pred -EEEC-CCCCEEEecCcccc-cccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEc
Confidence 1222 23333333321110 1112233357899999999988752 24588899999999888889999999999999
Q ss_pred CEEEEccCCCchhhhhhcCC-CCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEeC
Q 020277 234 DLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 308 (328)
Q Consensus 234 d~VV~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~ 308 (328)
|+||+|||.+|.+|+.+.+. ..+.+.+..+|++.++..+ +. ....+|.+++.++.++|.+++.+++++....
T Consensus 153 d~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 225 (375)
T PRK06847 153 DLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA-EV--DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPR 225 (375)
T ss_pred CEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCC-Cc--cceEEEeCCCcEEEEEcCCCCeEEEEEeccC
Confidence 99999999999999988554 3678888888887654322 22 2246778888899999999888766665444
No 15
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.91 E-value=2.2e-22 Score=192.31 Aligned_cols=220 Identities=19% Similarity=0.174 Sum_probs=148.6
Q ss_pred CeEEEECCChHHHHHHHHHHH----CCCeEEEEccCCccccC-------CC-ccccceeechhHHHHHHhcCchHHHHHH
Q 020277 78 LRILVAGGGIGGLVFALAAKR----KGFEVLVFEKDMSAIRG-------EG-QYRGPIQIQSNALAALEAIDLDVAEEVM 145 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~----~g~~v~~~~~~~~~~~~-------~g-~~~~~~~l~~~~~~~l~~l~~g~~~~l~ 145 (328)
+||+||||||+|+++|+.|++ +|++|+|+|+.+.+... .+ ....++.++++++++|+.+ |+++.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--G~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--GAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc--Cchhhhh
Confidence 489999999999999999999 89999999995432211 01 1123589999999999998 8899987
Q ss_pred HhcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---C--CceEecCCeEEEEEEe---
Q 020277 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---G--DEIILNESNVIDFKDH--- 217 (328)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~--~~~i~~~~~v~~i~~~--- 217 (328)
+........+. +++. .+.....++... ...++++.++|..|.+.|.+.+ + ...++++++|++++.+
T Consensus 79 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~----~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 79 SDRIQPFGRMQ-VWDG-CSLALIRFDRDN----GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhcCCceeeEE-EecC-CCCceEEeecCC----CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 65432222222 2332 222223333211 1234467899999999998875 3 3458899999999752
Q ss_pred ----CCeEEEEEecCcEEecCEEEEccCCCchhhhhhcCCCC-ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEE
Q 020277 218 ----GDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 292 (328)
Q Consensus 218 ----~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 292 (328)
++++++++.+|++++||+||+|||.+|.+|+.+..... ..|.... +.+.+........ .....++.+++.+++
T Consensus 153 ~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~-~v~~v~~~~~~~~-~~~~~~f~~~g~~~~ 230 (437)
T TIGR01989 153 PNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHA-VVATLKLEEATEN-DVAWQRFLPTGPIAL 230 (437)
T ss_pred ccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEE-EEEEEEcccCCCC-CeEEEEECCCCCEEE
Confidence 46788999999999999999999999999998854432 3343333 3333322111111 122334467778888
Q ss_pred EeCCCCeEEEEEEEe
Q 020277 293 SDVGAGKMQWYAFNK 307 (328)
Q Consensus 293 ~P~~~g~~~~~~~~~ 307 (328)
+|++++..+|++..+
T Consensus 231 lPl~~~~~~~~~~~~ 245 (437)
T TIGR01989 231 LPLPDNNSTLVWSTS 245 (437)
T ss_pred eECCCCCEEEEEeCC
Confidence 999998876665553
No 16
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.91 E-value=8.9e-23 Score=184.75 Aligned_cols=217 Identities=34% Similarity=0.473 Sum_probs=160.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
..+|+|||||++||++|..|+++|++|+|+|+.. ..|+.| .++++.-|+.++|+++ ++.+.+.+.+.+...++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e-~~R~~g---~si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v- 74 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE-DPRGEG---TSINLALNGWRALKAI--GLKEQIREQGIPLGGRV- 74 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc-ccccCC---cceeehhhHHHHHHHc--ccHHHHHHhcCccccee-
Confidence 3589999999999999999999999999999964 445554 4689999999999999 68888888887766553
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCC------eEEEEEEeCCeEEEEEecCcE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQC 230 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~v~v~~~~g~~ 230 (328)
.....++++..++........ ....+.|..++++|.++++...++++. ....++.......+++.+|.+
T Consensus 75 -~~~~~sg~~~~~~~~~~~~~~----i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~ 149 (420)
T KOG2614|consen 75 -LIHGDSGKEVSRILYGEPDEY----ILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTT 149 (420)
T ss_pred -eeecCCCCeeEecccCCchHH----HHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcE
Confidence 234456777777655432211 112456677788888888877788775 555555555667788999999
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEeC
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 308 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~ 308 (328)
+++|++|+|||++|.||+.++... |.|.++.+|++.. +.|...+. ...++...+.++..-|.+.....++++...
T Consensus 150 ~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k 224 (420)
T KOG2614|consen 150 VKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDK 224 (420)
T ss_pred EEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecC
Confidence 999999999999999999996554 9999999999987 45544433 234454555556666777766555555533
No 17
>PRK09126 hypothetical protein; Provisional
Probab=99.91 E-value=2.1e-22 Score=189.82 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=151.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccC-CCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.++|+||||||+|+++|+.|+++|++|+|+|+.+..... ....+.++.+.++++++|+++ |+++.+...........
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL--GAWDRIPEDEISPLRDA 80 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC--CChhhhccccCCccceE
Confidence 579999999999999999999999999999998653110 111233578899999999999 77888765432221111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
. +.++.. .....++.. .......++.++|..+.+.|.+.+ ....++++++|++++.+++.+++++++|++++
T Consensus 81 ~-~~~~~~-~~~~~~~~~---~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 81 K-VLNGRS-PFALTFDAR---GRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred E-EEcCCC-CceeEeehh---hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 1 122111 111222210 011122356789999999888775 23458899999999988888889999999999
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEeC
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 308 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~ 308 (328)
||+||+|||.+|.+|+.+.........+...+......... .......|++.+.+++++|++++.++|++..+.
T Consensus 156 a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 229 (392)
T PRK09126 156 ARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPP 229 (392)
T ss_pred eCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCH
Confidence 99999999999999998854433334444444333322111 122345577888889999999998777765543
No 18
>PRK07045 putative monooxygenase; Reviewed
Probab=99.91 E-value=4.8e-22 Score=187.25 Aligned_cols=219 Identities=19% Similarity=0.300 Sum_probs=148.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+||||||+||++|+.|+++|++|+|+|+.+......+ +..++|+++++|+++ |+++.+..........+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNG----ADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDAM 77 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCc----ccccCccHHHHHHHc--CCHHHHHhcccccccce
Confidence 457999999999999999999999999999999976432222 356999999999999 88888876543221111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCe--EEEEEecCcE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK--VSVVLENGQC 230 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~ 230 (328)
. ++ ..+.....++... ....+ +...+.|.+|.+.|.+.+ +...++++++|++++.++++ +.+++.+|++
T Consensus 78 ~-~~--~~g~~~~~~~~~~-~~~~g--~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~ 151 (388)
T PRK07045 78 R-LY--HDKELIASLDYRS-ASALG--YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGER 151 (388)
T ss_pred E-Ee--cCCcEEEEecCCc-cccCC--ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCE
Confidence 1 11 2344444333211 11112 235688999999998875 33558899999999987665 3688889999
Q ss_pred EecCEEEEccCCCchhhhhhcCCC--CceEeeeEEEEEeeccCCCcccccceEEEecC-CeEEEEEeCCCCeEEEEEEEe
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQ--EAIFSGYTCYTGIADFVPADIESVGYRVFLGH-KQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~P~~~g~~~~~~~~~ 307 (328)
+++|+||+|||.+|.+|+.+.+.. ...|.+...+ +.+...+. ... ...+|+++ +++++++|++++..+|++..+
T Consensus 152 ~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 152 VAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAF-GTIALTDS-VRE-CNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred EECCEEEECCCCChHHHHHhhCCCcccCCCCcceeE-EEEeccCC-ccc-cceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 999999999999999999765432 2334443333 33322211 111 12344444 566778999988877776655
Q ss_pred CC
Q 020277 308 EP 309 (328)
Q Consensus 308 ~~ 309 (328)
.+
T Consensus 229 ~~ 230 (388)
T PRK07045 229 AD 230 (388)
T ss_pred cc
Confidence 43
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.90 E-value=4.5e-22 Score=194.92 Aligned_cols=222 Identities=19% Similarity=0.243 Sum_probs=154.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...++|+||||||+||++|..|+++|++|+|+|+.+..... ..++.++++++++|+++ |+++++.+.+.....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~- 80 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAVGIDDEALRVLQAI--GLADEVLPHTTPNHG- 80 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----CceeeeCHHHHHHHHHc--CChhHHHhhcccCCc-
Confidence 45689999999999999999999999999999998753322 22488999999999999 888888765533221
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEe--cC-
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE--NG- 228 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g- 228 (328)
+ .+++ ..+.....++. ......+++....++|..+++.|.+.+ ....++++++|++++++++++++++. +|
T Consensus 81 ~-~~~~-~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 81 M-RFLD-AKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred e-EEEc-CCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 1 1222 23444444442 112233455456789999999998875 34568999999999999999998886 46
Q ss_pred -cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEe-eccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 229 -QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGI-ADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 229 -~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
.+++||+||+|||.+|.+|+.+. ...........|... +..............++++++.++++|++++..+|.+..
T Consensus 158 ~~~i~ad~vVgADG~~S~vR~~lg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 236 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVRRTLG-VPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML 236 (538)
T ss_pred EEEEEEEEEEecCCCchhHHHHcC-CeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence 47999999999999999999884 322212112222211 111111111223456778888999999999987776554
Q ss_pred e
Q 020277 307 K 307 (328)
Q Consensus 307 ~ 307 (328)
.
T Consensus 237 ~ 237 (538)
T PRK06183 237 L 237 (538)
T ss_pred C
Confidence 3
No 20
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.90 E-value=7.5e-22 Score=182.70 Aligned_cols=223 Identities=25% Similarity=0.269 Sum_probs=139.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
++|+||||||+|+++|..|+++|++|+|||+.+...... .++.+.++++++|+.+ |+++.+.+...........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~----~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~~ 75 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG----RGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRIF 75 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS----SSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc----cccccccccccccccc--cchhhhhhhcccccceeeE
Confidence 589999999999999999999999999999987643222 2488999999999999 8889888765332211111
Q ss_pred cccCCCCc--eEEeecCCc-hhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecC---
Q 020277 158 LVDGISGS--WYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG--- 228 (328)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g--- 228 (328)
+.....+. +........ .......+....+.|..|++.|.+.+ + ..+++++++++++.+++++++.+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~d~~~~~~~~~~~~~g 154 (356)
T PF01494_consen 76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQDDDGVTVVVRDGEDG 154 (356)
T ss_dssp EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEEETTEEEEEEEETCTC
T ss_pred eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccccccccccccccccCC
Confidence 11110011 000000000 01122334457899999999999885 4 55899999999999999887666544
Q ss_pred --cEEecCEEEEccCCCchhhhhhcCCCCceEee--eEEEEEeeccC-CCcccccceEEEecCCeEEEEEeCCC-CeEEE
Q 020277 229 --QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSG--YTCYTGIADFV-PADIESVGYRVFLGHKQYFVSSDVGA-GKMQW 302 (328)
Q Consensus 229 --~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~P~~~-g~~~~ 302 (328)
.+++||+||+|||.+|.+|+.+... .+.... ...+..+.... ..++......+...+...++++|+.+ +...+
T Consensus 155 ~~~~i~adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 233 (356)
T PF01494_consen 155 EEETIEADLVVGADGAHSKVRKQLGID-RPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRF 233 (356)
T ss_dssp EEEEEEESEEEE-SGTT-HHHHHTTGG-EEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred ceeEEEEeeeecccCcccchhhhcccc-ccCccccccccccccccccccccccccccccccccccceeEeeccCCccceE
Confidence 2799999999999999999998533 222221 12232222111 11111112334445666678899988 44444
Q ss_pred EEEEeC
Q 020277 303 YAFNKE 308 (328)
Q Consensus 303 ~~~~~~ 308 (328)
++....
T Consensus 234 ~~~~~~ 239 (356)
T PF01494_consen 234 VWFLPF 239 (356)
T ss_dssp EEEEET
T ss_pred EEeeec
Confidence 444443
No 21
>PRK08244 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-21 Score=189.66 Aligned_cols=213 Identities=17% Similarity=0.244 Sum_probs=144.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.++|+||||||+||++|..|+++|++|+|+|+.+..... +.++.++|+++++|+++ |+++++.+.+.......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~~~- 74 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKALTLHPRTLEILDMR--GLLERFLEKGRKLPSGH- 74 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----cceeEecHHHHHHHHhc--CcHHHHHhhcccccceE-
Confidence 378999999999999999999999999999998754322 23589999999999999 88888877543222111
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEe--cC-cEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE--NG-QCY 231 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~--~g-~~i 231 (328)
+.. ..+. ..+. . .....++.+.++|..+++.|.+.+. ...++++++|++++++++++++++. +| .++
T Consensus 75 -~~~-~~~~--~~~~--~--~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i 146 (493)
T PRK08244 75 -FAG-LDTR--LDFS--A--LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTL 146 (493)
T ss_pred -Eec-cccc--CCcc--c--CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEE
Confidence 111 0000 1111 0 1123345578999999999987652 2448889999999998888887765 45 479
Q ss_pred ecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 232 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
+||+||+|||.+|.+|+.+..........+..+.+.+.... ........+++++++++++|+++++++|++..
T Consensus 147 ~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~ 219 (493)
T PRK08244 147 TSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD--PPPSSVLSLCTREGGVMIVPLSGGIYRVLIID 219 (493)
T ss_pred EeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC--CCCcceeEEEeCCceEEEEECCCCeEEEEEEc
Confidence 99999999999999999884221111112222222222111 11112345567888899999999987766543
No 22
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.90 E-value=7.9e-22 Score=185.29 Aligned_cols=218 Identities=22% Similarity=0.239 Sum_probs=148.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc-cCCCccccceeechhHHHHHHhcCchHHHHHHH-hccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMR-AGCVTGDRIN 156 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~-~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~-~~~~~~~~~~ 156 (328)
||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...+..+.++.+++++.++|+++ |+++++.+ ..... ..+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~-~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL--GVWDKIEPDRAQPI-RDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC--CchhhhhhhcCCCc-eEEE
Confidence 69999999999999999999999999999997642 11222234588999999999999 78888876 33221 1111
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
++.. .+.....++.. .......++.++|.+|.+.|.+.+ +...++++++|++++.+++++++++++|+++++
T Consensus 78 -~~~~-~~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 152 (385)
T TIGR01988 78 -VSDG-GSFGALHFDAD---EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA 152 (385)
T ss_pred -EEeC-CCCceEEechh---hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence 2221 11111222211 001122357899999999998876 325688999999999888889999999999999
Q ss_pred CEEEEccCCCchhhhhhcCCCC-ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 234 DLLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 234 d~VV~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
|+||+|||.+|.+|+.+..... ..+ +...+...+...... ......++.++++++++|++++..++.+...
T Consensus 153 ~~vi~adG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 224 (385)
T TIGR01988 153 RLLVGADGANSKVRQLAGIPTTGWDY-GQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLP 224 (385)
T ss_pred eEEEEeCCCCCHHHHHcCCCcccccc-CCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECC
Confidence 9999999999999998853332 223 233333333221111 1122234556777889999999877766544
No 23
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.90 E-value=6.9e-22 Score=185.70 Aligned_cols=216 Identities=20% Similarity=0.210 Sum_probs=148.2
Q ss_pred eEEEECCChHHHHHHHHHHHCC-CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
||+||||||+|+++|+.|+++| ++|+|+|+.+......+....++.++|+++++|+++ |+++.+...+..... +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~-~~- 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL--GLWPKLAPFATPILD-IH- 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC--CChhhhHhhcCccce-EE-
Confidence 6999999999999999999999 999999998654322221123478999999999999 788887654432211 11
Q ss_pred cccC-CCCceEEeecCCchhhhcC-CCeEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 158 LVDG-ISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
+.+. ..+. ..+.. ...+ .+..+.++|.+|.+.|.+.+. ...++++++|++++.+++++++++.+|++++
T Consensus 77 ~~~~~~~~~--~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 150 (382)
T TIGR01984 77 VSDQGHFGA--THLRA----SEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLR 150 (382)
T ss_pred EEcCCCCce--EEech----hhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 1111 1111 11111 1111 123578999999999998763 3457889999999988889999998898999
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCC-eEEEEEEE
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFN 306 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g-~~~~~~~~ 306 (328)
||+||+|||.+|.+|+.+.........++.++...+....+. .. ....++++++.++++|++++ .+++++..
T Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 151 AKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH-QG-CAFERFTPHGPLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred eeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC-CC-EEEEeeCCCCCeEECcCCCCCCEEEEEEC
Confidence 999999999999999988644434444556666554321111 11 12234556667888999998 55555444
No 24
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.89 E-value=1.6e-21 Score=184.52 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=148.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
++|+||||||+||++|+.|+++| ++|+|+|+.+..... ..+.++.+.|+++++|+++ |+++.+...+..... +
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~--~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~-~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS--RDPRASAIAAAARRMLEAL--GVWDEIAPEAQPITD-M 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC--CCcceEEecHHHHHHHHHC--CChhhhhhhcCcccE-E
Confidence 68999999999999999999995 999999998642111 1123588999999999999 888888765432221 1
Q ss_pred cccccCCCCc----eEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCc
Q 020277 156 NGLVDGISGS----WYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (328)
Q Consensus 156 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~ 229 (328)
.+++...+. ....++. ....+.++.+.++|..|.+.|.+.+. ...++++++|++++.+++++.+++.+|+
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 152 (403)
T PRK07333 77 -VITDSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS 152 (403)
T ss_pred -EEEeCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence 112111111 1112111 11124455678999999999988762 2458889999999998899999999999
Q ss_pred EEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEE
Q 020277 230 CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (328)
Q Consensus 230 ~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~ 305 (328)
++++|+||+|||.+|.+|+.+.........++.++......... .......++.++++++++|+++++.+|.+.
T Consensus 153 ~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~ 226 (403)
T PRK07333 153 VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERP--HGGRAEEHFLPAGPFAILPLKGNRSSLVWT 226 (403)
T ss_pred EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCC--CCCEEEEEeCCCCceEEeECCCCCeEEEEE
Confidence 99999999999999999998754332222333444333322211 112234455677788899999998766543
No 25
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.89 E-value=1.2e-21 Score=184.45 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=146.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
++.++|+||||||+|+++|+.|+++|++|+|+|+.+.... . ....+.++++++|+++ |+++.+........ .
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~----r~~~l~~~s~~~l~~l--gl~~~~~~~~~~~~-~ 76 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-L----RTTALLGPSIRFLERL--GLWARLAPHAAPLQ-S 76 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-c----chhhCcHHHHHHHHHh--CchhhhHhhcceee-E
Confidence 3457999999999999999999999999999999864321 1 1256788899999999 88888876432211 1
Q ss_pred ccccccCCCCceE----EeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC--ceEecCCeEEEEEEeCCeEEEEEecC
Q 020277 155 INGLVDGISGSWY----IKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG 228 (328)
Q Consensus 155 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g 228 (328)
+. +++. .+... ..++. ......++++.+++..+.+.|.+.+.. ...+++++|++++.+++++++++++|
T Consensus 77 ~~-~~~~-~g~~~~~~~~~~~~---~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g 151 (388)
T PRK07494 77 MR-IVDA-TGRLIRAPEVRFRA---AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADG 151 (388)
T ss_pred EE-EEeC-CCCCCCCceEEEcH---HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCC
Confidence 11 2221 11111 11111 111123446789999999999887521 23477999999999889999999899
Q ss_pred cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 229 QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 229 ~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
++++||+||+|||.+|.+|+.+.........++.++...+....+. ......++.+++.++++|+++++.++++..
T Consensus 152 ~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~ 227 (388)
T PRK07494 152 TTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPH--QNVSTEFHTEGGPFTQVPLPGRRSSLVWVV 227 (388)
T ss_pred CEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCC--CCEEEEEeCCCCcEEEEECCCCcEEEEEEC
Confidence 8999999999999999999988544333333444554443321111 111233445677788899998876555443
No 26
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.89 E-value=3.3e-21 Score=181.83 Aligned_cols=223 Identities=17% Similarity=0.137 Sum_probs=147.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccC-CCccccceeechhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
...++|+||||||+|+++|+.|+++|++|+|+|+.+.+... .+.....+.++|+++++|+++ |+++.+.+.......
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~ 81 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL--GVWPAVRAARAQPYR 81 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC--CchhhhhHhhCCccc
Confidence 45689999999999999999999999999999998643211 111112367899999999999 888888754222222
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
.+. +++.. +.....++... ....+.++.++|..|.+.|.+.+. ...++++++|++++.+++++++++.+|+++
T Consensus 82 ~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~ 156 (392)
T PRK08773 82 RMR-VWDAG-GGGELGFDADT---LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRL 156 (392)
T ss_pred EEE-EEeCC-CCceEEechhc---cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEE
Confidence 221 22211 11122232211 011234578999999999988752 245888999999999888999998888899
Q ss_pred ecCEEEEccCCCchhhhhhcCCCC-ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 232 AGDLLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
++|+||+|||.+|.+|+.+..... ..|.. .+....++...+. ......++.+++.+.++|++++...|++.++
T Consensus 157 ~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~ 230 (392)
T PRK08773 157 EAALAIAADGAASTLRELAGLPVSRHDYAQ-RGVVAFVDTEHPH--QATAWQRFLPTGPLALLPFADGRSSIVWTLP 230 (392)
T ss_pred EeCEEEEecCCCchHHHhhcCCceEEEecc-EEEEEEEEccCCC--CCEEEEEeCCCCcEEEEECCCCceEEEEECC
Confidence 999999999999999998743322 12222 2222222211111 1122233566777889999998866665554
No 27
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.89 E-value=2.2e-21 Score=184.25 Aligned_cols=219 Identities=20% Similarity=0.194 Sum_probs=140.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+||||||+|+++|+.|++.|++|+|+|+.+...... .+.++.++++++++|+++ |+++++......... +
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~-~ 91 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALSLLSARIFEGI--GVWEKILPQIGKFRQ-I 91 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEechHHHHHHHHC--ChhhhhHhhcCCccE-E
Confidence 36899999999999999999999999999999987532111 123588999999999999 888888765433211 1
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecC---c
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG---Q 229 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~ 229 (328)
.+.+. .+.....+.... ......++.+.+..|.+.|.+.+ +...++++++|++++.+++++++++.++ .
T Consensus 92 -~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~ 166 (415)
T PRK07364 92 -RLSDA-DYPGVVKFQPTD---LGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQ 166 (415)
T ss_pred -EEEeC-CCCceeeecccc---CCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcce
Confidence 12221 122222222111 01112234455557888887765 3455788999999998888888888643 3
Q ss_pred EEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 230 CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 230 ~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
+++||+||+|||.+|.+|+.+............++...+.. +.......+..|+ ++++++++|++++..+|++..
T Consensus 167 ~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~ 241 (415)
T PRK07364 167 TLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKH-EAPHNDIAYERFW-PSGPFAILPLPGNRCQIVWTA 241 (415)
T ss_pred EEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEc-cCCCCCEEEEEec-CCCCeEEeECCCCCEEEEEEC
Confidence 69999999999999999998843321111122333333321 1111111222333 455688899999886665543
No 28
>PRK06184 hypothetical protein; Provisional
Probab=99.89 E-value=3.4e-21 Score=187.34 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=140.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
+..+|+||||||+||++|+.|+++|++|+|+|+.+...... .+..++|+++++|+++ |+++++.+.+......
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~----ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~~- 74 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGS----RGKGIQPRTQEVFDDL--GVLDRVVAAGGLYPPM- 74 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCc----cceeecHHHHHHHHHc--CcHHHHHhcCccccce-
Confidence 35799999999999999999999999999999986543222 2477899999999999 8889888765432211
Q ss_pred cccccCCCCceEEeecCCch---hhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEE---ec
Q 020277 156 NGLVDGISGSWYIKFDTFTP---AAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL---EN 227 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~---~~ 227 (328)
. ++. .+........... .....++....++|..+++.|.+.+. ...++++++|++++++++++++++ .+
T Consensus 75 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~ 151 (502)
T PRK06184 75 R-IYR--DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG 151 (502)
T ss_pred e-EEe--CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC
Confidence 1 111 1111111111100 01112334568899999999988762 245888999999999888888877 55
Q ss_pred CcEEecCEEEEccCCCchhhhhhcCCCCc-eEeeeEEEEEeeccCCCcccccceEEEecCC-eEEEEEeCCCCeE
Q 020277 228 GQCYAGDLLVGADGIWSKVRKNLFGPQEA-IFSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGKM 300 (328)
Q Consensus 228 g~~i~ad~VV~AdG~~S~vr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~P~~~g~~ 300 (328)
+++++||+||+|||.+|.+|+.+...... .+.....+...... + ........+|..++ ++++++|++++..
T Consensus 152 ~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 224 (502)
T PRK06184 152 EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSL-T-GLDRDAWHQWPDGDMGMIALCPLPGTDL 224 (502)
T ss_pred eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEe-e-cCCCcceEEccCCCCcEEEEEEccCCCe
Confidence 67899999999999999999988432211 11110111222211 1 11122344555554 7888899987753
No 29
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.89 E-value=2.8e-21 Score=181.84 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=118.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc-ccCCCccc-cceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA-IRGEGQYR-GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~-~~~~g~~~-~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
.++|+||||||+|+++|+.|+++|++|+|+|+.+.. ....+..+ ..+.++|+++++|+++ |+++.+.+........
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL--GAWSSIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC--CCchhhhHhhCCccce
Confidence 369999999999999999999999999999987532 11121111 2358999999999999 8888886532222122
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
+. .++.... ...+..... .....++.+.+..|+..|.+++ +...++++++|++++.+++++++++.+|.++
T Consensus 81 ~~-~~~~~~~--~~~~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (384)
T PRK08849 81 LE-TWEHPEC--RTRFHSDEL---NLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEI 154 (384)
T ss_pred EE-EEeCCCc--eEEeccccc---CCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEE
Confidence 21 1111111 112221100 0112346777778988887765 3455888999999999899999999999999
Q ss_pred ecCEEEEccCCCchhhhhhc
Q 020277 232 AGDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~~~~ 251 (328)
+||+||+|||.+|.+|+.++
T Consensus 155 ~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 155 EAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred EeeEEEEecCCCchhHHhcC
Confidence 99999999999999999885
No 30
>PTZ00367 squalene epoxidase; Provisional
Probab=99.88 E-value=3.8e-21 Score=187.38 Aligned_cols=216 Identities=21% Similarity=0.205 Sum_probs=142.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC-c-cccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM-S-AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~-~-~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~ 152 (328)
+..++|+||||||+|+++|..|+++|++|+|+|+.. . +.+.. +..++|++.++|+++ |+++.+.+.....
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~-----G~~L~p~g~~~L~~L--GL~d~l~~i~~~~- 102 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIV-----GELLQPGGVNALKEL--GMEECAEGIGMPC- 102 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhh-----hhhcCHHHHHHHHHC--CChhhHhhcCcce-
Confidence 457899999999999999999999999999999986 2 22222 367999999999999 7888876544331
Q ss_pred ccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc-----CCceEecCCeEEEEEEeCC-------e
Q 020277 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-----GDEIILNESNVIDFKDHGD-------K 220 (328)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~i~~~~~-------~ 220 (328)
..+. +++ .++... ..+.. .+ ..+..+++.++.+.|.+.+ +...++ ..+|+++..+++ +
T Consensus 103 ~~~~-v~~-~~G~~~-~i~~~-----~~-~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~g 172 (567)
T PTZ00367 103 FGYV-VFD-HKGKQV-KLPYG-----AG-ASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYG 172 (567)
T ss_pred eeeE-EEE-CCCCEE-EecCC-----CC-CceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEE
Confidence 1111 122 122211 11110 11 1235678888888887765 233344 457888765443 3
Q ss_pred EEEEEec-----------------------CcEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccc
Q 020277 221 VSVVLEN-----------------------GQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIES 277 (328)
Q Consensus 221 v~v~~~~-----------------------g~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (328)
+++++.+ +++++||+||+|||.+|.+|+.+... .+.+.+...|++...........
T Consensus 173 V~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~-~~~~~~~s~~~g~~~~~~~lp~~ 251 (567)
T PTZ00367 173 VEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHY-TPASENHSHFVGLVLKNVRLPKE 251 (567)
T ss_pred EEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCC-CCCcCcceEEEEEEEecccCCCC
Confidence 5555444 56899999999999999999998533 23444445555543211111122
Q ss_pred cceEEEecCCeEEEEEeCCCCeEEEEEEEeCC
Q 020277 278 VGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 309 (328)
Q Consensus 278 ~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~~ 309 (328)
...++|+++++++++||+++++.++++.+..+
T Consensus 252 ~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~ 283 (567)
T PTZ00367 252 QHGTVFLGKTGPILSYRLDDNELRVLVDYNKP 283 (567)
T ss_pred CeeEEEEcCCceEEEEEcCCCeEEEEEEecCC
Confidence 33467889999999999999988777666544
No 31
>PLN02985 squalene monooxygenase
Probab=99.88 E-value=6e-21 Score=184.91 Aligned_cols=221 Identities=14% Similarity=0.161 Sum_probs=146.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~ 152 (328)
.....+||+|||||++|+++|..|+++|++|+|+|+....... ..++.++|++.++|+++ |+++.+........
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~----~~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~ 112 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER----MMGEFMQPGGRFMLSKL--GLEDCLEGIDAQKA 112 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc----ccccccCchHHHHHHHc--CCcchhhhccCccc
Confidence 3445679999999999999999999999999999997542211 12478999999999999 77787765432222
Q ss_pred ccccccccCCCCce-EEeecCCchhhhc-CCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCe---EEEE
Q 020277 153 DRINGLVDGISGSW-YIKFDTFTPAAEK-GLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK---VSVV 224 (328)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~ 224 (328)
..+. ++ ..++. ...++... ... ..+.++.++|.+|.+.|.+++ ++..++. .+++++..+++. +++.
T Consensus 113 ~~~~-v~--~~g~~~~~~~~~~~--~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~~~v~gV~~~ 186 (514)
T PLN02985 113 TGMA-VY--KDGKEAVAPFPVDN--NNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEKGVIKGVTYK 186 (514)
T ss_pred ccEE-EE--ECCEEEEEeCCCCC--cCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcCCEEEEEEEE
Confidence 2221 11 12322 22222111 111 123357899999999998875 3344554 467777665553 3343
Q ss_pred EecCc--EEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEE
Q 020277 225 LENGQ--CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQW 302 (328)
Q Consensus 225 ~~~g~--~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~ 302 (328)
..+|+ +++||+||+|||.+|.+|+.+.....+.+++...|... . . ........+++++++.++++||++++++++
T Consensus 187 ~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~ 263 (514)
T PLN02985 187 NSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISK-N-C-RLEEPEKLHLIMSKPSFTMLYQISSTDVRC 263 (514)
T ss_pred cCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEc-c-c-cCCCCCcceEEcCCCceEEEEEeCCCeEEE
Confidence 44665 46799999999999999999965544445555545321 1 1 111223346788999999999999998777
Q ss_pred EEEEeC
Q 020277 303 YAFNKE 308 (328)
Q Consensus 303 ~~~~~~ 308 (328)
++..+.
T Consensus 264 ~~~~~~ 269 (514)
T PLN02985 264 VFEVLP 269 (514)
T ss_pred EEEEeC
Confidence 776654
No 32
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.88 E-value=7.9e-21 Score=179.25 Aligned_cols=219 Identities=20% Similarity=0.262 Sum_probs=147.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC---CCeEEEEccCCcc-ccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~---g~~v~~~~~~~~~-~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~ 151 (328)
+.++|+||||||+|+++|+.|+++ |++|+|+|+.... ....+....++.+.++++++|+++ |+++.+...+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~ 79 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL--GVWQALADCATPI 79 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC--CChhhhHhhcCCc
Confidence 457999999999999999999998 9999999996322 111221223588999999999999 8888887654322
Q ss_pred ccccccccc-CCCCceEEeecCCchhhhcCCC-eEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEe
Q 020277 152 GDRINGLVD-GISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE 226 (328)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~ 226 (328)
.. +. +.+ +..+. ..+. ....+.+ .++.++|.+|.+.|.+.+ ....++++++|++++.+++++.+++.
T Consensus 80 ~~-~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~ 151 (395)
T PRK05732 80 TH-IH-VSDRGHAGF--VRLD----AEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD 151 (395)
T ss_pred cE-EE-EecCCCCce--EEee----hhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC
Confidence 11 11 111 11111 1111 0112222 246788999999988765 23457889999999988888999998
Q ss_pred cCcEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 227 NGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 227 ~g~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
+|.++++|+||+|||.+|.+|+.+.........++.++...+...... ..... ..+.+++.++++|+++|+.++++..
T Consensus 152 ~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~g~~~~~p~~~g~~~~~~~~ 229 (395)
T PRK05732 152 DGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH-QGRAF-ERFTEHGPLALLPMSDGRCSLVWCH 229 (395)
T ss_pred CCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC-CCEEE-EeecCCCCEEEeECCCCCeEEEEEC
Confidence 888999999999999999999988544444444556665554322111 11112 2344566788899999987665554
No 33
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.88 E-value=6.4e-21 Score=180.60 Aligned_cols=212 Identities=17% Similarity=0.206 Sum_probs=138.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcccc----CCCccccceeechhHHHHHHhcCchHHHHHHHhccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR----GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~----~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~ 152 (328)
.++|+||||||+|+++|+.|+++|++|+|+|+.+.... .......++.+.|+++++|+++ |+++.+.+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL--GAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC--ChhhhhhHhhCccc
Confidence 46899999999999999999999999999999862100 0000011357899999999999 88888875432221
Q ss_pred ccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcE
Q 020277 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQC 230 (328)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (328)
..+. +++. .+.....++... ......++.+++..+.+.|.+.+. ...++++++|++++.+++++++++.+|++
T Consensus 80 ~~~~-~~~~-~~~~~~~~~~~~---~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~ 154 (405)
T PRK05714 80 SEMQ-VWDG-SGTGQIHFSAAS---VHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQ 154 (405)
T ss_pred eeEE-EEcC-CCCceEEecccc---cCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCE
Confidence 2221 2222 222223332111 011123578899999999887753 24478899999999988899999999989
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCc-eEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCC
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEA-IFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG 298 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g 298 (328)
++||+||+|||.+|.+|+.++..... .|.....+. .+.. + .........++.++++++++|++++
T Consensus 155 ~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~g~~~~~P~~~~ 220 (405)
T PRK05714 155 LRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRC-S-EPHRATAWQRFTDDGPLAFLPLERD 220 (405)
T ss_pred EEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEc-C-CCCCCEEEEEcCCCCCeEEeeCCCC
Confidence 99999999999999999988543221 222222111 1111 1 1111122234577778999999754
No 34
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.88 E-value=1.3e-20 Score=186.78 Aligned_cols=220 Identities=15% Similarity=0.226 Sum_probs=140.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC-CCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
+..+|+||||||+||++|+.|++. |++|+|+|+.+.... .| .+..++|+++++|+++ |+++++.+.+......
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~-~g---rA~gl~prtleiL~~l--Gl~d~l~~~g~~~~~~ 104 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLE-LG---QADGIACRTMEMFQAF--GFAERILKEAYWINET 104 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-CC---eeeEEChHHHHHHHhc--cchHHHHhhcccccce
Confidence 467999999999999999999995 999999999865332 22 3478999999999999 8899998765432211
Q ss_pred ccccccCCC--CceEEeecCC-ch-hhhcCCCeEEEecHHHHHHHHHHhc---CC-ceEecCCeEEEEEEeCC---eEEE
Q 020277 155 INGLVDGIS--GSWYIKFDTF-TP-AAEKGLPVTRVISRMTLQQILAKAV---GD-EIILNESNVIDFKDHGD---KVSV 223 (328)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~~~-~~-~~~~~~~~~~~i~r~~l~~~L~~~~---~~-~~i~~~~~v~~i~~~~~---~v~v 223 (328)
.++.... ...+.+.... .. .....+++ ..++|..+++.|.+.+ +. ..++++++|++++.+++ .|++
T Consensus 105 --~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v 181 (634)
T PRK08294 105 --AFWKPDPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTV 181 (634)
T ss_pred --EEEcCCCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEE
Confidence 1222110 0111111100 00 01112343 6789999999998876 32 24788999999987643 4777
Q ss_pred EEe------cC--cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCC-Cccc--ccceEEEecCCeEEEE
Q 020277 224 VLE------NG--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP-ADIE--SVGYRVFLGHKQYFVS 292 (328)
Q Consensus 224 ~~~------~g--~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~ 292 (328)
++. +| ++++||+||+|||++|.||++++......... ..| ++.+... .+.+ .....++.++++.+++
T Consensus 182 ~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~-~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~ 259 (634)
T PRK08294 182 TLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSAN-HAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILL 259 (634)
T ss_pred EEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCccc-ceE-EEEEEEEccCCCCcceEEEEecCCCceEEE
Confidence 775 34 58999999999999999999884322211111 122 2222111 1111 1112234467788999
Q ss_pred EeCCCCe-EEEEEEE
Q 020277 293 SDVGAGK-MQWYAFN 306 (328)
Q Consensus 293 ~P~~~g~-~~~~~~~ 306 (328)
+|+++|. +++++..
T Consensus 260 ~P~~~g~~~r~~~~~ 274 (634)
T PRK08294 260 IPREGGYLVRLYVDL 274 (634)
T ss_pred EECCCCeEEEEEEec
Confidence 9999985 5555443
No 35
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.88 E-value=1.7e-20 Score=176.67 Aligned_cols=219 Identities=18% Similarity=0.188 Sum_probs=145.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcccc-CCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...+|+||||||+|+++|+.|++.|++|+|+|+.+.... +.+.....+.+.++++++|+.+ |+++.+..........
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL--GVWQALDAARLAPVYD 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc--CchhhhhhhcCCcceE
Confidence 357999999999999999999999999999999866422 1111223478999999999998 7778775432211111
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCC-eEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQC 230 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (328)
+. +.....+. ..+.. ...+.| ..+.++|..+.+.|.+.+ +...++ +++|++++.+++++.+++.+|.+
T Consensus 82 ~~-~~~~~~~~--~~~~~----~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~ 153 (388)
T PRK07608 82 MR-VFGDAHAR--LHFSA----YQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQV 153 (388)
T ss_pred EE-EEECCCce--eEeec----cccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCE
Confidence 11 11111111 11111 011122 246789999999998876 324456 89999999888889999989889
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
++||+||+|||.+|.+|+.+............++...++... ........|++++++++++|++++++.+++..
T Consensus 154 ~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (388)
T PRK07608 154 LRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER--PHRGTAYQWFRDDGILALLPLPDGHVSMVWSA 227 (388)
T ss_pred EEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC--CCCCEEEEEecCCCCEEEeECCCCCeEEEEEC
Confidence 999999999999999999885443222212223333222111 11122456678888999999999986655443
No 36
>PRK07190 hypothetical protein; Provisional
Probab=99.87 E-value=5.3e-20 Score=177.59 Aligned_cols=217 Identities=16% Similarity=0.212 Sum_probs=142.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+||||||+||++|+.|+++|++|+|+|+.+.+... +.++.++++++++|+.+ |+++++...+......
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~----gra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~~~- 76 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEV----GRADALNARTLQLLELV--DLFDELYPLGKPCNTS- 76 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccccc----ccceEeCHHHHHHHHhc--ChHHHHHhhCccceeE-
Confidence 4579999999999999999999999999999999754322 23478999999999999 8888887654322211
Q ss_pred cccccCCCCceEEeecC-CchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 156 NGLVDGISGSWYIKFDT-FTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
..+. .+..+..... .........+....+.+..+++.|.+.+. ...++++++|++++++++++++.+.+|++++
T Consensus 77 -~~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~ 153 (487)
T PRK07190 77 -SVWA--NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQ 153 (487)
T ss_pred -EEec--CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEE
Confidence 1111 1221111110 00001111233467889999999987642 2458889999999999999888888888999
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEE---EeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEE
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYT---GIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~ 305 (328)
|++||+|||.+|.+|+++........ ....|. ...+...++. .....+..+.+.++++|.+++..++++.
T Consensus 154 a~~vVgADG~~S~vR~~lgi~f~g~~-~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~r~~~~ 226 (487)
T PRK07190 154 SRYVIGADGSRSFVRNHFNVPFEIIR-PQIIWAVIDGVIDTDFPKV--PEIIVFQAETSDVAWIPREGEIDRFYVR 226 (487)
T ss_pred eCEEEECCCCCHHHHHHcCCCccccc-cceeEEEEEEEEccCCCCC--cceEEEEcCCCCEEEEECCCCEEEEEEE
Confidence 99999999999999998843322111 112221 2221110111 1122344566678889998876555443
No 37
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.87 E-value=3.3e-20 Score=174.83 Aligned_cols=216 Identities=18% Similarity=0.274 Sum_probs=139.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.++|+||||||+|+++|+.|+++|++|+|+|+.+..... ...++ ..+.++++++|+++ |+++++...+.... .+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~-~~~~a-~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL-GRIRA-GVLEQGTVDLLREA--GVDERMDREGLVHE-GTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC-CceeE-eeECHHHHHHHHHC--CChHHHHhcCceec-ceE
Confidence 478999999999999999999999999999998742111 11122 33899999999999 88899877553221 111
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEE-eCCeEEEEEe-cCc--E
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVLE-NGQ--C 230 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~-~~~~v~v~~~-~g~--~ 230 (328)
+.+ +.....++.... ..+.+ .....+..+.+.|.+++. ...++++++++.+.. +++.+.|++. +|+ +
T Consensus 77 -~~~---~~~~~~~~~~~~--~~~~~-~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 77 -IAF---DGQRFRIDLKAL--TGGKT-VMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred -Eee---CCEEEEEecccc--CCCce-EEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 111 111222222111 11112 123457788888877642 234677888887755 5556677775 775 7
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeee--EEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCe-EEEEEEEe
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFNK 307 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~-~~~~~~~~ 307 (328)
++||+||+|||.+|.+|+++.....+.+.++ ..|+++....+.. ....+|.+.+..+.++|+.++. ..|++..+
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV---SHELIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC---CCceEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 9999999999999999999865555555554 3677765322221 1123566777777788886543 34555443
No 38
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.87 E-value=5.4e-20 Score=173.44 Aligned_cols=217 Identities=18% Similarity=0.159 Sum_probs=140.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCc--cccceeechhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
+.++|+||||||+|+++|+.|++.|++|+|+|+.+......+. ......+.+++.++|+.+ |+++.+.........
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL--GVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc--CChhhhhhhhCcccc
Confidence 4589999999999999999999999999999997532211110 011257999999999999 888887653222211
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcE
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQC 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (328)
.+. .+....+. ..++... ......++.++|..|.+.|.+.+ ....++++++|++++.+++++++++.+|++
T Consensus 82 ~~~-~~~~~~~~--~~~~~~~---~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~ 155 (391)
T PRK08020 82 RLE-TWEWETAH--VVFDAAE---LKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEE 155 (391)
T ss_pred eEE-EEeCCCCe--EEecccc---cCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCE
Confidence 111 11111222 1222110 00112356899999999998765 234577899999999888889999889989
Q ss_pred EecCEEEEccCCCchhhhhhcCC-CCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEE
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~ 303 (328)
++||+||+|||.+|.+|+.+... ..+.|.. .++...+... .......... +.+++...++|+.++...++
T Consensus 156 ~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~-~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~~~p~~~~~~~~v 226 (391)
T PRK08020 156 IQAKLVIGADGANSQVRQMAGIGVHGWQYRQ-SCMLISVKCE-NPPGDSTWQQ-FTPSGPRAFLPLFDNWASLV 226 (391)
T ss_pred EEeCEEEEeCCCCchhHHHcCCCccccCCCc-eEEEEEEEec-CCCCCEEEEE-EcCCCCEEEeECCCCcEEEE
Confidence 99999999999999999988533 2334443 3333333221 1111111222 33344456689987764443
No 39
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.87 E-value=5.5e-20 Score=173.49 Aligned_cols=216 Identities=19% Similarity=0.249 Sum_probs=134.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
..+|+||||||+||++|+.|++.|++|+|+|+.+.... .+..++ ..+.|+++++|+++ |+++++...+..... +.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~-~~~~~a-~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~-~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYV-EGRIRA-GVLEQGTVDLLREA--GVGERMDREGLVHDG-IE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccccce-eEECHhHHHHHHHc--CChHHHHhcCCccCc-EE
Confidence 47899999999999999999999999999999974211 111112 34899999999999 888998775543221 11
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEE-eCCeEEEEE-ecCc--E
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKD-HGDKVSVVL-ENGQ--C 230 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~-~~~~v~v~~-~~g~--~ 230 (328)
+.. .+. ...++... ..+.+....++|..+.+.|.+.+ ....+++++++++++. +++.+.|++ .+|+ +
T Consensus 77 -~~~--~g~-~~~~~~~~---~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~ 149 (392)
T PRK08243 77 -LRF--DGR-RHRIDLTE---LTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR 149 (392)
T ss_pred -EEE--CCE-EEEecccc---ccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE
Confidence 111 122 22232211 11112234567888887776653 2244888999999987 666777777 3664 6
Q ss_pred EecCEEEEccCCCchhhhhhcCCCCceEeee--EEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEE
Q 020277 231 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 306 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~ 306 (328)
++||+||+|||.+|.+|+++.......+... ..|.++....++.. ....+...++.+++++|.+++...+++..
T Consensus 150 i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVS--DELIYANHERGFALCSMRSPTRSRYYLQC 225 (392)
T ss_pred EEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCC--CceEEeeCCCceEEEecCCCCcEEEEEEe
Confidence 8999999999999999999854433334333 45555532222211 11222223444545444455544444443
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.86 E-value=6.6e-20 Score=180.07 Aligned_cols=171 Identities=23% Similarity=0.357 Sum_probs=121.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...++|+||||||+||++|+.|+++|++|+|+|+.+..... ..++.++++++++|+++ |+++++.+.+......
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~~ 78 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKANTTSARSMEHFRRL--GIADEVRSAGLPVDYP 78 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----CccccCCHHHHHHHHhc--ChHHHHHhhcCCcccc
Confidence 34679999999999999999999999999999998643222 23478999999999999 8999988765432110
Q ss_pred cc-ccccCCCCceEEeecCCchhhh----------cCCC-eEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCC
Q 020277 155 IN-GLVDGISGSWYIKFDTFTPAAE----------KGLP-VTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD 219 (328)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~ 219 (328)
.. .+.....+..+..++....... ...+ ..+.++|..|++.|.+.+ +...++++++|++++.+++
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 79 TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD 158 (545)
T ss_pred CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC
Confidence 00 0111123333333322110000 0111 236789999999998875 3456999999999999888
Q ss_pred eEEEEEec---Cc--EEecCEEEEccCCCchhhhhhc
Q 020277 220 KVSVVLEN---GQ--CYAGDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 220 ~v~v~~~~---g~--~i~ad~VV~AdG~~S~vr~~~~ 251 (328)
++++++.+ |+ ++++|+||+|||.+|.+|+.+.
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 88877643 53 7899999999999999999884
No 41
>PRK06185 hypothetical protein; Provisional
Probab=99.86 E-value=2.9e-20 Score=176.20 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=141.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..+||+||||||+|+++|+.|++.|++|+|+|+.+...+.. .+..+++++.++|+++ |+++.+.+........+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~----r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~~~~ 78 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDF----RGDTVHPSTLELMDEL--GLLERFLELPHQKVRTL 78 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccc----cCceeChhHHHHHHHc--CChhHHhhcccceeeeE
Confidence 46899999999999999999999999999999986432211 2367999999999999 77888765332221222
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE---EEEecCc
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS---VVLENGQ 229 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~---v~~~~g~ 229 (328)
. ++. .+......+... .....++.+.+.+..+.+.|.+.+ +...++++++|++++.+++.+. +...+|+
T Consensus 79 ~-~~~--~~~~~~~~~~~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~ 153 (407)
T PRK06185 79 R-FEI--GGRTVTLADFSR--LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP 153 (407)
T ss_pred E-EEE--CCeEEEecchhh--cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc
Confidence 1 111 122121112111 112235567889999999998765 3345888999999998877653 3344664
Q ss_pred -EEecCEEEEccCCCchhhhhhcCCCC-ceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEe
Q 020277 230 -CYAGDLLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 230 -~i~ad~VV~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
+++||+||+|||.+|.+|+.+..... ..|.+...+.. .+. +..... ....++.+++.++++|.+ +.+.+.+..+
T Consensus 154 ~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~g~~~llP~~-~~~~i~~~~~ 229 (407)
T PRK06185 154 GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR-LPR-EPDDPE-SLMGRFGPGQGLIMIDRG-DYWQCGYVIP 229 (407)
T ss_pred EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEe-cCC-CCCCCc-ccceEecCCcEEEEEcCC-CeEEEEEEec
Confidence 79999999999999999998743322 22333333322 221 111111 123466788889999997 6655544444
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.85 E-value=3e-19 Score=172.49 Aligned_cols=209 Identities=20% Similarity=0.225 Sum_probs=138.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc-cCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~-~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...+|+||||||+|+++|+.|+++|++|+|+|+.+.+. ... ....++++++++|+++ |+++++.+.+.....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~----Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~- 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGS----RAGGLHARTLEVLDQR--GIADRFLAQGQVAQV- 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCc----ceeeECHHHHHHHHHc--CcHHHHHhcCCcccc-
Confidence 45799999999999999999999999999999986432 111 1367999999999999 888888765322110
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
..+ ....++... .....++.+.+.+..+++.|.+.+. ...++++++|++++++++++++++.+|++++
T Consensus 75 -~~~-------~~~~~~~~~--~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 144 (488)
T PRK06834 75 -TGF-------AATRLDISD--FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLR 144 (488)
T ss_pred -cee-------eeEeccccc--CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 000 011111111 1112344567889999999988753 2458899999999999999999888888999
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCC-CCeEEEEEE
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAF 305 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~-~g~~~~~~~ 305 (328)
||+||+|||.+|.+|+.+..........+..+...+.. + .... ...+..+.+.+.+.|.. ++.+++.+.
T Consensus 145 a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~-~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 214 (488)
T PRK06834 145 AQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEM-T-EEPE--WGVHRDALGIHAFGRLEDEGPVRVMVT 214 (488)
T ss_pred eCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEe-c-CCCC--cceeeCCCceEEEeccCCCCeEEEEEe
Confidence 99999999999999998842222111122222222221 1 1111 11334555666677776 665554443
No 43
>PRK06996 hypothetical protein; Provisional
Probab=99.85 E-value=2.6e-19 Score=169.17 Aligned_cols=209 Identities=16% Similarity=0.175 Sum_probs=142.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCC----CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKG----FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g----~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~ 149 (328)
....++|+||||||+|+++|+.|++.| ++|+|+|+.+.... .. ...++.++++++++|+++ ++++... .
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-~~-~~r~~~l~~~~~~~L~~l--g~~~~~~---~ 80 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS-AN-DPRAIALSHGSRVLLETL--GAWPADA---T 80 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC-CC-CceEEEecHHHHHHHHhC--CCchhcC---C
Confidence 445689999999999999999999987 47999999753211 11 123478999999999999 6666521 1
Q ss_pred ccccccccccc-CCCCceEEeecCCchhhhcCC-CeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEE
Q 020277 150 VTGDRINGLVD-GISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL 225 (328)
Q Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~ 225 (328)
....+. +++ +..+....... ..+. +.++.++|..|++.|.+++. ...+++++++++++.++++|++++
T Consensus 81 -~~~~~~-~~~~~~~g~~~~~~~------~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~ 152 (398)
T PRK06996 81 -PIEHIH-VSQRGHFGRTLIDRD------DHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLAL 152 (398)
T ss_pred -cccEEE-EecCCCCceEEeccc------ccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEE
Confidence 111111 111 11122222211 1112 23678999999999998862 245788999999999999999988
Q ss_pred ecC---cEEecCEEEEccCC-CchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCe
Q 020277 226 ENG---QCYAGDLLVGADGI-WSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 299 (328)
Q Consensus 226 ~~g---~~i~ad~VV~AdG~-~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~ 299 (328)
.++ ++++||+||+|||. +|.+|+.++......+.++.++++.++... ..+.... ..+.+.+.+.++|++++.
T Consensus 153 ~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~G~~~~lp~~~~~ 228 (398)
T PRK06996 153 GTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA-PRPGWAW-ERFTHEGPLALLPLGGPR 228 (398)
T ss_pred CCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC-CCCCEEE-EEecCCCCeEEeECCCCC
Confidence 765 58999999999997 588888876666666677778877665321 1111122 234566678888998764
No 44
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.83 E-value=2e-18 Score=169.61 Aligned_cols=166 Identities=18% Similarity=0.298 Sum_probs=120.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
...+|+||||||+||++|+.|+++|++|+|+|+.+..... +.++.++++++++|+++ |+.+.+.+.+......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~- 94 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG- 94 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece-
Confidence 5679999999999999999999999999999998743222 22488999999999999 7888887655322111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEe--cCc-
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE--NGQ- 229 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~- 229 (328)
..+.. +.....++... ......+....+.|..+++.|.+.+ +...++++++|++++.+++++++++. ++.
T Consensus 95 ~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~ 170 (547)
T PRK08132 95 KVFLR---DEEVYRFDLLP-EPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPY 170 (547)
T ss_pred eEEeC---CCeEEEecCCC-CCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcE
Confidence 00111 12222322211 1112233345689999999998875 33458899999999998888877664 443
Q ss_pred EEecCEEEEccCCCchhhhhhcC
Q 020277 230 CYAGDLLVGADGIWSKVRKNLFG 252 (328)
Q Consensus 230 ~i~ad~VV~AdG~~S~vr~~~~~ 252 (328)
++++|+||+|||.+|.+|+.++.
T Consensus 171 ~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 171 TLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred EEEeCEEEECCCCCcHHHHHcCC
Confidence 79999999999999999998854
No 45
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.81 E-value=3.1e-18 Score=154.74 Aligned_cols=207 Identities=20% Similarity=0.198 Sum_probs=132.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
+||+||||||+|+++|+.|++.|++|+|+|+...... ...+..+.+++.+.+... +. ..... . ... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~----~~~~~~~~~~~~~~l~~~--~~-~~~~~---~--~~~-~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY----KPCGGALSPRVLEELDLP--LE-LIVNL---V--RGA-R 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc----ccccCccCHhHHHHhcCC--ch-hhhhh---e--eeE-E
Confidence 4899999999999999999999999999999865321 112355778877777655 21 11110 0 000 0
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecC-cEEecC
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-QCYAGD 234 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~i~ad 234 (328)
+.. ..+... .... ..+..+.++|.++.+.|.+.+. ...++++++|++++.+++++++.+.++ .++++|
T Consensus 68 ~~~-~~~~~~-~~~~-------~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 68 FFS-PNGDSV-EIPI-------ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred EEc-CCCcEE-Eecc-------CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeC
Confidence 111 111111 1110 1233478999999999988763 244788999999998888887766554 589999
Q ss_pred EEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEec----CCeEEEEEeCCCCeEEEEEEEe
Q 020277 235 LLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFNK 307 (328)
Q Consensus 235 ~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~P~~~g~~~~~~~~~ 307 (328)
+||+|||.+|.+|+.+.....+.... ..++..+.............++++ ++.+++++|+.++++.+.+...
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~ 214 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSR 214 (295)
T ss_pred EEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeec
Confidence 99999999999999774332222222 333434332211222233445544 3678999999999866655444
No 46
>PRK11445 putative oxidoreductase; Provisional
Probab=99.77 E-value=2.6e-17 Score=152.96 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=107.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
+||+||||||+|+++|..|++. ++|+|+|+.+...........+..++|++.++|++++........... ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-----~~~- 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-----QIF- 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-----ccc-
Confidence 6899999999999999999999 999999998642110000001256999999999998542111110000 000
Q ss_pred cccCCCCceEEeecCCchh-hhcCCCeEEEecHHHHHHHHHHhcC-CceEecCCeEEEEEEeCCeEEEEE-ecCc--EEe
Q 020277 158 LVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVL-ENGQ--CYA 232 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~i~ 232 (328)
.....+..... ...+.++ +.++|.+|.+.|.+... ...++++++|++++.+++++.+++ .+|+ +++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~~-~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~ 145 (351)
T PRK11445 75 --------AVKTIDLANSLTRNYQRSY-INIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHIT 145 (351)
T ss_pred --------eeeEecccccchhhcCCCc-ccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEE
Confidence 00011111000 1112222 57999999999988642 245888999999998888888876 4564 699
Q ss_pred cCEEEEccCCCchhhhhhcCC
Q 020277 233 GDLLVGADGIWSKVRKNLFGP 253 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~ 253 (328)
||+||+|||.+|.+|+.+...
T Consensus 146 a~~vV~AdG~~S~vr~~l~~~ 166 (351)
T PRK11445 146 ARYLVGADGANSMVRRHLYPD 166 (351)
T ss_pred eCEEEECCCCCcHHhHHhcCC
Confidence 999999999999999988644
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.76 E-value=1.8e-16 Score=151.55 Aligned_cols=205 Identities=16% Similarity=0.231 Sum_probs=120.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
....+||+||||||+|+++|+.|+++|++|+|+|+..... ..+++++ . ...++.+ ++.+.+....... .
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~---k~cgg~i--~---~~~l~~l--gl~~~~~~~~i~~-~ 104 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNA---KPCGGAI--P---LCMVGEF--DLPLDIIDRKVTK-M 104 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccccc--c---HhHHhhh--cCcHHHHHHHhhh-h
Confidence 3456899999999999999999999999999999985421 1123334 2 3455666 4444443321110 1
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEe---CCeEEEEEec
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDH---GDKVSVVLEN 227 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~---~~~v~v~~~~ 227 (328)
. +.. .+.....+... ....++..+++|..|++.|.+++ |.+ ++.+ ++++++.+ ++.+.+++.+
T Consensus 105 ~---~~~--p~~~~v~~~~~----~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~-~~~~-~v~~i~~~~~~~~~~~v~~~~ 173 (450)
T PLN00093 105 K---MIS--PSNVAVDIGKT----LKPHEYIGMVRREVLDSFLRERAQSNGAT-LING-LFTRIDVPKDPNGPYVIHYTS 173 (450)
T ss_pred e---Eec--CCceEEEeccc----CCCCCeEEEecHHHHHHHHHHHHHHCCCE-EEec-eEEEEEeccCCCCcEEEEEEe
Confidence 1 111 11111222210 01123335799999999998875 444 4544 57777642 2445665532
Q ss_pred -------C--cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCC--CcccccceEEEec----CCeEEEE
Q 020277 228 -------G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVS 292 (328)
Q Consensus 228 -------g--~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g----~~~~~~~ 292 (328)
| .+++||+||+|||++|.+|+.+.... .....++...+...+ .+.......+|++ ++.|.|+
T Consensus 174 ~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~Wi 250 (450)
T PLN00093 174 YDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWV 250 (450)
T ss_pred ccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEE
Confidence 3 47999999999999999999885432 112233333322211 1122223456666 5678999
Q ss_pred EeCCCCeEEEEE
Q 020277 293 SDVGAGKMQWYA 304 (328)
Q Consensus 293 ~P~~~g~~~~~~ 304 (328)
+|.++. +++..
T Consensus 251 fP~g~~-~~VG~ 261 (450)
T PLN00093 251 FPKCDH-VAVGT 261 (450)
T ss_pred EECCCc-EEEEE
Confidence 999854 44443
No 48
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.76 E-value=6.3e-17 Score=152.80 Aligned_cols=212 Identities=20% Similarity=0.175 Sum_probs=128.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..+||+||||||||++||+.|++.|++|.|+|+...+..... + +-.+.+..++.+... ...++.. . .....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~--~-~~~~~~~~l~~l~~~---~~~~i~~-~-v~~~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC--C-GGGLSPRALEELIPD---FDEEIER-K-VTGARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc--c-cceechhhHHHhCCC---cchhhhe-e-eeeeEE
Confidence 468999999999999999999999999999999865321111 1 122445444333221 1111110 0 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEec-CcEE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN-GQCY 231 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~-g~~i 231 (328)
.. .........+ .+..+.++|..+.+.|.+.+ |.+ ++.++++.++..+++++.+.... +.++
T Consensus 74 ---~~-~~~~~~~~~~---------~~~~y~v~R~~fd~~La~~A~~aGae-~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 139 (396)
T COG0644 74 ---YF-PGEKVAIEVP---------VGEGYIVDRAKFDKWLAERAEEAGAE-LYPGTRVTGVIREDDGVVVGVRAGDDEV 139 (396)
T ss_pred ---Ee-cCCceEEecC---------CCceEEEEhHHhhHHHHHHHHHcCCE-EEeceEEEEEEEeCCcEEEEEEcCCEEE
Confidence 00 0111111111 13368999999999998765 444 77899999999988776655544 4789
Q ss_pred ecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEE---ecCCeEEEEEeCCCCeEEEEEEEeC
Q 020277 232 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVF---LGHKQYFVSSDVGAGKMQWYAFNKE 308 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~P~~~g~~~~~~~~~~ 308 (328)
+|++||+|||.+|.+++.+................+.. .|.+.....+..+ ..++++.|+||.+++.+++.+....
T Consensus 140 ~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~ 218 (396)
T COG0644 140 RAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIE-VPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLL 218 (396)
T ss_pred EcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEe-cCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEec
Confidence 99999999999999999986551111212222222222 2211111111111 2368899999999998777776554
Q ss_pred CC
Q 020277 309 PA 310 (328)
Q Consensus 309 ~~ 310 (328)
..
T Consensus 219 ~~ 220 (396)
T COG0644 219 DD 220 (396)
T ss_pred CC
Confidence 43
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.76 E-value=2.2e-16 Score=148.83 Aligned_cols=199 Identities=20% Similarity=0.265 Sum_probs=119.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccC-CccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD-MSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~-~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+||+||||||+|+++|+.|++.|++|+|+|+. +.... ++++ +.+ +.++.+ ++.+++...... ...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~----cg~~--i~~---~~l~~l--~i~~~~~~~~~~-~~~-- 66 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP----CGGA--IPP---CLIEEF--DIPDSLIDRRVT-QMR-- 66 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc----CcCC--cCH---hhhhhc--CCchHHHhhhcc-eeE--
Confidence 58999999999999999999999999999998 32221 2222 333 345666 444554432111 011
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEec------
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN------ 227 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~------ 227 (328)
+.. ..+. ...... ..+..+...++|..|.+.|.+++ |.. ++. .+|+++..+++++.+++.+
T Consensus 67 -~~~-~~~~-~~~~~~-----~~~~~~~~~~~r~~fd~~L~~~a~~~G~~-v~~-~~v~~v~~~~~~~~v~~~~~~~~~~ 136 (388)
T TIGR02023 67 -MIS-PSRV-PIKVTI-----PSEDGYVGMVRREVFDSYLRERAQKAGAE-LIH-GLFLKLERDRDGVTLTYRTPKKGAG 136 (388)
T ss_pred -EEc-CCCc-eeeecc-----CCCCCceEeeeHHHHHHHHHHHHHhCCCE-EEe-eEEEEEEEcCCeEEEEEEeccccCC
Confidence 111 1111 111110 01112223699999999998875 444 443 4699998888888887764
Q ss_pred C--cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCC--CcccccceEEEec----CCeEEEEEeCCCCe
Q 020277 228 G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGK 299 (328)
Q Consensus 228 g--~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g----~~~~~~~~P~~~g~ 299 (328)
| .+++||+||+|||.+|.+|+.+....... ...++...+.... .........+|++ ++.+.|++|.++.
T Consensus 137 ~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~- 213 (388)
T TIGR02023 137 GEKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH- 213 (388)
T ss_pred CcceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-
Confidence 2 37999999999999999999885332211 1123333322111 1112223445543 5678999999754
Q ss_pred EEEE
Q 020277 300 MQWY 303 (328)
Q Consensus 300 ~~~~ 303 (328)
.++.
T Consensus 214 ~~vg 217 (388)
T TIGR02023 214 IAVG 217 (388)
T ss_pred eEEe
Confidence 4443
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.70 E-value=3.4e-15 Score=141.01 Aligned_cols=201 Identities=16% Similarity=0.217 Sum_probs=115.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
.+|+||||||+|+++|+.|+++|++|+|+|+..... ..+++++ . ...|+.+ ++.+.+....... ..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~---~~cg~~i--~---~~~l~~~--g~~~~~~~~~i~~-~~--- 66 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA---KPCGGAI--P---LCMVDEF--ALPRDIIDRRVTK-MK--- 66 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccccc--c---HhhHhhc--cCchhHHHhhhce-eE---
Confidence 489999999999999999999999999999975421 1222333 2 2456666 4444443321110 00
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEE---eCCeEEEEE--ec--
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKD---HGDKVSVVL--EN-- 227 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~---~~~~v~v~~--~~-- 227 (328)
+. ........+... . ....+...++|..|.+.|.+++ |.. ++.+ ++++++. .++.+.+++ .+
T Consensus 67 ~~--~p~~~~~~~~~~--~--~~~~~~~~v~R~~~d~~L~~~a~~~G~~-v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~ 138 (398)
T TIGR02028 67 MI--SPSNIAVDIGRT--L--KEHEYIGMLRREVLDSFLRRRAADAGAT-LING-LVTKLSLPADADDPYTLHYISSDSG 138 (398)
T ss_pred Ee--cCCceEEEeccC--C--CCCCceeeeeHHHHHHHHHHHHHHCCcE-EEcc-eEEEEEeccCCCceEEEEEeecccc
Confidence 11 111111211110 0 1112234789999999998875 334 5555 5777753 234455543 22
Q ss_pred ---C--cEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCC--cccccceEEEec----CCeEEEEEeCC
Q 020277 228 ---G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVG 296 (328)
Q Consensus 228 ---g--~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g----~~~~~~~~P~~ 296 (328)
| .+++|++||+|||.+|.+|+.+..... .....+...+..... ........+|++ ++.|.|++|.+
T Consensus 139 ~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~ 215 (398)
T TIGR02028 139 GPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKC 215 (398)
T ss_pred ccCCCccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECC
Confidence 3 379999999999999999998853321 122233222222111 112223456665 56799999998
Q ss_pred CCeEEEEE
Q 020277 297 AGKMQWYA 304 (328)
Q Consensus 297 ~g~~~~~~ 304 (328)
+ ..++.+
T Consensus 216 ~-~~~VG~ 222 (398)
T TIGR02028 216 D-HVAVGT 222 (398)
T ss_pred C-eEEEEE
Confidence 5 444433
No 51
>PLN02463 lycopene beta cyclase
Probab=99.68 E-value=2.9e-15 Score=142.64 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=98.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
....+||+||||||+|+++|..|++.|++|+|+|+.+....... ..+ ....++.+ ++.+.+.... .. .
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~-----~g~---w~~~l~~l--gl~~~l~~~w-~~-~ 92 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNN-----YGV---WVDEFEAL--GLLDCLDTTW-PG-A 92 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccc-----cch---HHHHHHHC--CcHHHHHhhC-CC-c
Confidence 34468999999999999999999999999999999753211000 111 12346666 5555543321 00 0
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
. +.++... ....+.++ ..++|.+|.+.|.+++. ...++ ..+|++++.+++++.|++++|.++
T Consensus 93 ~-------------v~~~~~~-~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i 156 (447)
T PLN02463 93 V-------------VYIDDGK-KKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKI 156 (447)
T ss_pred E-------------EEEeCCC-CccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEE
Confidence 0 0000000 01122344 46899999999988753 22243 579999999888899999999899
Q ss_pred ecCEEEEccCCCchhhh
Q 020277 232 AGDLLVGADGIWSKVRK 248 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~ 248 (328)
+||+||+|||.+|++++
T Consensus 157 ~A~lVI~AdG~~s~l~~ 173 (447)
T PLN02463 157 QASLVLDATGFSRCLVQ 173 (447)
T ss_pred EcCEEEECcCCCcCccC
Confidence 99999999999998765
No 52
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.66 E-value=1.2e-14 Score=138.66 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=99.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..+||+||||||+|+++|+.|+++|++|+|+|+...+... ...++. +.+.. ++.+-.++.....-........+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k--~~~gg~-l~~~~---~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK--NVTGGR-LYAHS---LEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc--ccccce-echhh---HHHHhhhhhhcCcccceeeeeeE
Confidence 4589999999999999999999999999999998653211 111122 22222 22221111110000000000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
.+.. ..+.....+... ......+..+.+.|.++.+.|.+.+ ....++.+++|++++.+++.+.+...+|++++|
T Consensus 78 -~~~~-~~~~~~~~~~~~--~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A 153 (428)
T PRK10157 78 -AFMT-EKSAMTMDYCNG--DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEA 153 (428)
T ss_pred -EEEc-CCCceeeccccc--cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEEC
Confidence 0111 111111111110 0001112346889999999998875 223478899999998877777655567788999
Q ss_pred CEEEEccCCCchhhhhhc
Q 020277 234 DLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 234 d~VV~AdG~~S~vr~~~~ 251 (328)
++||+|||.+|.+++.+.
T Consensus 154 ~~VI~A~G~~s~l~~~lg 171 (428)
T PRK10157 154 KTVILADGVNSILAEKLG 171 (428)
T ss_pred CEEEEEeCCCHHHHHHcC
Confidence 999999999999999874
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.64 E-value=1e-14 Score=138.89 Aligned_cols=165 Identities=23% Similarity=0.284 Sum_probs=97.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHH-HHHhccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-VMRAGCVTGDR 154 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~-l~~~~~~~~~~ 154 (328)
..+||+||||||+|++||+.|++.|++|+|+|+.+.+.... ..++ . +....++. +-.++... ..+. ......
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~gg-~-i~~~~~~~---l~~~~~~~~~i~~-~~~~~~ 76 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MTGG-R-LYAHTLEA---IIPGFAASAPVER-KVTREK 76 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-ccCc-e-eecccHHH---HcccccccCCccc-ccccee
Confidence 45899999999999999999999999999999986532111 1111 1 22222221 11111100 0000 000000
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
+. +.. ..+.....+.... ........+.+.|..|.+.|.+++. ...++.+++|+++..+++++.+...++.+++
T Consensus 77 ~~-~~~-~~~~~~~~~~~~~--~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~ 152 (429)
T PRK10015 77 IS-FLT-EESAVTLDFHREQ--PDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILE 152 (429)
T ss_pred EE-EEe-CCCceEeecccCC--CCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEE
Confidence 10 111 1111111111100 0000112478999999999987652 2347788999999887777765555667899
Q ss_pred cCEEEEccCCCchhhhhhc
Q 020277 233 GDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~ 251 (328)
|++||+|||.+|.+++.+.
T Consensus 153 A~~VI~AdG~~s~v~~~lg 171 (429)
T PRK10015 153 ANVVILADGVNSMLGRSLG 171 (429)
T ss_pred CCEEEEccCcchhhhcccC
Confidence 9999999999999998774
No 54
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.64 E-value=5.9e-15 Score=132.28 Aligned_cols=221 Identities=18% Similarity=0.187 Sum_probs=147.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc-ccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~-~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
....||+|||||.+|.+.|+.|++.|.+|+|+||+-.. .|-.| .-+||.+...|.++ |+.|.+.......-.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivG-----EllQPGG~~~L~~L--Gl~Dcve~IDAQ~v~ 115 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVG-----ELLQPGGYLALSKL--GLEDCVEGIDAQRVT 115 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHH-----HhcCcchhHHHHHh--CHHHHhhcccceEee
Confidence 34578999999999999999999999999999998553 34444 56999999999999 777777643222111
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-EEEe--c
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE--N 227 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~--~ 227 (328)
.+.-+.++. +....++.. .-...+.+...+..++.+.|++.+ ++..+. ...|.++.++++.++ |+++ .
T Consensus 116 Gy~ifk~gk--~v~~pyP~~---~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~gvvkGV~yk~k~ 189 (509)
T KOG1298|consen 116 GYAIFKDGK--EVDLPYPLK---NFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEEGVVKGVTYKNKE 189 (509)
T ss_pred eeEEEeCCc--eeeccCCCc---CCCCCcccceeeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhccCeEEeEEEecCC
Confidence 111111111 111222211 111223467788889999998874 444344 567777777776544 4443 3
Q ss_pred Cc--EEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEE
Q 020277 228 GQ--CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (328)
Q Consensus 228 g~--~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~ 305 (328)
|+ +..|-+-|.|||-.|..|+.+..+....-. ..+.|++-.....+...+.++.+++...+++||++...+++.+-
T Consensus 190 gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~--S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~ 267 (509)
T KOG1298|consen 190 GEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVP--SYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVD 267 (509)
T ss_pred CceEEEecceEEEecchhHHHHHHhcCCcccccc--hheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEe
Confidence 43 567899999999999999999655444222 22334443334444455678888999999999999999888877
Q ss_pred EeCCC
Q 020277 306 NKEPA 310 (328)
Q Consensus 306 ~~~~~ 310 (328)
++.+.
T Consensus 268 v~g~~ 272 (509)
T KOG1298|consen 268 VPGQK 272 (509)
T ss_pred cCccc
Confidence 76643
No 55
>PLN02697 lycopene epsilon cyclase
Probab=99.62 E-value=9.7e-14 Score=134.39 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..+||+||||||+|+++|..|++.|++|+|+|+....... ..++. ..++.+ ++.+.+... ... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-------~GvW~---~~l~~l--gl~~~i~~~-w~~-~-- 170 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-------YGVWE---DEFKDL--GLEDCIEHV-WRD-T-- 170 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-------cccch---hHHHhc--CcHHHHHhh-cCC-c--
Confidence 4589999999999999999999999999999986331111 11222 235555 443333211 100 0
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC-CceEecCCeEEEEEEeCCeEE-EEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVS-VVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a 233 (328)
...++... ....+.++ ..++|..|.+.|.+++. ....+.+.+|++++.+++++. +++.+|.+++|
T Consensus 171 -----------~v~~~~~~-~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A 237 (529)
T PLN02697 171 -----------IVYLDDDK-PIMIGRAY-GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPC 237 (529)
T ss_pred -----------EEEecCCc-eeeccCcc-cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEEC
Confidence 01111000 00112333 36899999999988752 122235789999988777765 45677889999
Q ss_pred CEEEEccCCCchhhhhhc-CCCCceEeeeEEEEEeeccCCCcccccceEEEec---------------CCeEEEEEeCCC
Q 020277 234 DLLVGADGIWSKVRKNLF-GPQEAIFSGYTCYTGIADFVPADIESVGYRVFLG---------------HKQYFVSSDVGA 297 (328)
Q Consensus 234 d~VV~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------------~~~~~~~~P~~~ 297 (328)
++||+|||.+|.. .+. ....+....+.++...+++.....+... .++++ ..+|++++|.++
T Consensus 238 ~lVI~AdG~~S~r--l~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~ 314 (529)
T PLN02697 238 RLATVASGAASGR--LLQYEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSS 314 (529)
T ss_pred CEEEECCCcChhh--hhccccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCC
Confidence 9999999999942 221 1112334455555444443211121111 12222 126889999999
Q ss_pred CeEEE
Q 020277 298 GKMQW 302 (328)
Q Consensus 298 g~~~~ 302 (328)
+++++
T Consensus 315 ~~~~V 319 (529)
T PLN02697 315 TRVFF 319 (529)
T ss_pred CeEEE
Confidence 98766
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.58 E-value=1.4e-13 Score=131.81 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=120.0
Q ss_pred eEEEECCChHHHHHHHHHHHCC---CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHH--HHHhccc--c
Q 020277 79 RILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCV--T 151 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g---~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~--l~~~~~~--~ 151 (328)
||+|||||+||.++|..|++.+ ++|+|+|+...+.-+.| .+..|....+++.+ |+.+. +.+.... .
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vG-----e~~~p~~~~~~~~l--gi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVG-----ESTLPSLRPFLRRL--GIDEADFMRACDATFKL 73 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSE-----EE--THHHHCHHHH--T--HHHHCHHCT-EEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCcc-----ccchHHHHHHHHHc--CCChHHHHHHhCCeEec
Confidence 6999999999999999999998 89999999976655554 67788888889988 54444 5444321 1
Q ss_pred cccccccccCCCCceEEeecCC----------------------------------------ch-h--hhcCCCeEEEec
Q 020277 152 GDRINGLVDGISGSWYIKFDTF----------------------------------------TP-A--AEKGLPVTRVIS 188 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~-~--~~~~~~~~~~i~ 188 (328)
+..+.++. .....+...+... .. . ......+++.++
T Consensus 74 g~~f~~w~-~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlD 152 (454)
T PF04820_consen 74 GIRFVNWG-ERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLD 152 (454)
T ss_dssp EEEEESSS-SCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEE
T ss_pred cEEeeecC-CCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEe
Confidence 11111111 0111111111110 00 0 011235689999
Q ss_pred HHHHHHHHHHhc---CCceEecCCeEEEEEEeCCe-E-EEEEecCcEEecCEEEEccCCCchhhhhhcCCCCceEeee-E
Q 020277 189 RMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-V-SVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGY-T 262 (328)
Q Consensus 189 r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~-~ 262 (328)
|..+.+.|.+.+ |.. ++.+ +|+++..++++ + .|++.+|++++||+||.|+|..|.+.+..+.......... .
T Consensus 153 R~~fd~~L~~~A~~~Gv~-~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~ 230 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVE-VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLP 230 (454)
T ss_dssp HHHHHHHHHHHHHHTT-E-EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCE
T ss_pred HHHHHHHHHHHHhcCCCE-EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccccccc
Confidence 999999998875 555 3434 68888776655 3 5888899999999999999999988777532221222111 1
Q ss_pred EEEEeec-cCCCcccccceEEEecCCeEEEEEeCCCCeEE
Q 020277 263 CYTGIAD-FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQ 301 (328)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~ 301 (328)
+.+++.. ....+...........+.+|+|.+|++++..+
T Consensus 231 ~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~ 270 (454)
T PF04820_consen 231 NDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS 270 (454)
T ss_dssp EEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE
T ss_pred ccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE
Confidence 1122211 11111112223344558899999999998766
No 57
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.58 E-value=5.7e-14 Score=142.65 Aligned_cols=144 Identities=27% Similarity=0.308 Sum_probs=98.1
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+|+||||||+||++|+.|+++ |++|+|+|+.+... ..+.++.+.+++++.|+.++..+.+.+....... ...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~----~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~-~~~ 75 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD----TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHW-DDI 75 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc----ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccC-Cce
Confidence 3799999999999999999998 89999999986421 2334689999999999887533444443321110 000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
. +. ..+... ...+.++ ..++|.+|.+.|.+++. ...++++++|++++.. ..++
T Consensus 76 ~-~~--~~g~~~---------~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~ 130 (765)
T PRK08255 76 D-VH--FKGRRI---------RSGGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADA 130 (765)
T ss_pred E-EE--ECCEEE---------EECCeeE-ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCC
Confidence 0 00 011110 1123333 46899999999998752 2447888888776321 2579
Q ss_pred CEEEEccCCCchhhhhhc
Q 020277 234 DLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 234 d~VV~AdG~~S~vr~~~~ 251 (328)
|+||+|||.+|.+|+++.
T Consensus 131 D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 131 DLVIASDGLNSRIRTRYA 148 (765)
T ss_pred CEEEEcCCCCHHHHHHHH
Confidence 999999999999999764
No 58
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.57 E-value=6.5e-13 Score=125.15 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=90.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 158 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~~ 158 (328)
||+||||||+|+++|+.|++.|++|+|+|+.+...... ...++... ++.+ ++. .+....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~-----~~~~~~~~---~~~~--~~~-~~~~~~---------- 59 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-----TYGVWDDD---LSDL--GLA-DCVEHV---------- 59 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCc-----cccccHhh---hhhh--chh-hHHhhc----------
Confidence 69999999999999999999999999999986421110 11222221 2233 221 111110
Q ss_pred ccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC--ceEecCCeEEEEEEe-CCeEEEEEecCcEEecCE
Q 020277 159 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~ad~ 235 (328)
+ .+......+.. ......++ ..+++..|.+.|.+.+.. ..++ ..+|++++.+ ++.+.+++.+|.+++|++
T Consensus 60 ~---~~~~~~~~~~~--~~~~~~~~-~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~ 132 (388)
T TIGR01790 60 W---PDVYEYRFPKQ--PRKLGTAY-GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARL 132 (388)
T ss_pred C---CCceEEecCCc--chhcCCce-eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCE
Confidence 0 00000111100 01112333 469999999999877532 2343 6789998877 567788888888999999
Q ss_pred EEEccCCCchhhhhh
Q 020277 236 LVGADGIWSKVRKNL 250 (328)
Q Consensus 236 VV~AdG~~S~vr~~~ 250 (328)
||+|||.+|.+++..
T Consensus 133 VI~A~G~~s~~~~~~ 147 (388)
T TIGR01790 133 VIDARGFGPLVQYVR 147 (388)
T ss_pred EEECCCCchhccccc
Confidence 999999999775433
No 59
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.55 E-value=9.9e-15 Score=132.54 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=97.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccc-eeech--hHHHHHHhcC---chHHHHHHHhcc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-IQIQS--NALAALEAID---LDVAEEVMRAGC 149 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~-~~l~~--~~~~~l~~l~---~g~~~~l~~~~~ 149 (328)
+.++|+|||||||||+||..++++|++|+|||+.+...+..--++++ .++.. ..-+++.+.+ .-+...+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~--- 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR--- 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh---
Confidence 46799999999999999999999999999999997754433222222 22221 1223333331 001111100
Q ss_pred cccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEec
Q 020277 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN 227 (328)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~ 227 (328)
.....+..+.... +-.+. ....|.-+.....-..+.++|..++ ..+.++.+++|.+++.++.+.++.+.+
T Consensus 79 ft~~d~i~~~e~~-Gi~~~-------e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~ 150 (408)
T COG2081 79 FTPEDFIDWVEGL-GIALK-------EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS 150 (408)
T ss_pred CCHHHHHHHHHhc-CCeeE-------EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC
Confidence 0001111111110 00000 1112222212344567788887775 335589999999999998899999999
Q ss_pred CcEEecCEEEEccCCCchh
Q 020277 228 GQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 228 g~~i~ad~VV~AdG~~S~v 246 (328)
|++++||.+|+|+|..|.-
T Consensus 151 g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 151 GETVKCDSLILATGGKSWP 169 (408)
T ss_pred CCEEEccEEEEecCCcCCC
Confidence 9999999999999988843
No 60
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.53 E-value=2.4e-12 Score=120.73 Aligned_cols=140 Identities=20% Similarity=0.303 Sum_probs=92.3
Q ss_pred eEEEECCChHHHHHHHHH--HHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 79 RILVAGGGIGGLVFALAA--KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l--~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
||+||||||||+++|+.| ++.|.+|+|+|+.+....... ..+.+ +. ..+ +..+.+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~-~tW~~--~~------~~~--~~~~~~v~~~w~------ 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPND-RTWCF--WE------KDL--GPLDSLVSHRWS------ 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCC-ccccc--cc------ccc--cchHHHHheecC------
Confidence 799999999999999999 888999999999865311110 00001 00 001 112233222111
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC-CceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
.+.+..+.... ....+++ ..|++..|.+.|.+.+. ...++.+.+|++|+.+++++.+++++|.+++|++
T Consensus 64 --------~~~v~~~~~~~-~~~~~~Y-~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~ 133 (374)
T PF05834_consen 64 --------GWRVYFPDGSR-ILIDYPY-CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARV 133 (374)
T ss_pred --------ceEEEeCCCce-EEcccce-EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeE
Confidence 11111111110 0111343 58999999999998875 3346778999999999988889999999999999
Q ss_pred EEEccCCCch
Q 020277 236 LVGADGIWSK 245 (328)
Q Consensus 236 VV~AdG~~S~ 245 (328)
||.|+|..+.
T Consensus 134 VvDa~g~~~~ 143 (374)
T PF05834_consen 134 VVDARGPSSP 143 (374)
T ss_pred EEECCCcccc
Confidence 9999997766
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.52 E-value=1.3e-12 Score=122.14 Aligned_cols=137 Identities=14% Similarity=0.241 Sum_probs=85.8
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
||+|||||+||+++|..|++. |++|.|+|+.+......- -.++..... ......++.+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~t-----w~~~~~~~~---~~~~~~~~~~v~~--------- 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHT-----WSFFDSDLS---DAQHAWLADLVQT--------- 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccc-----ceecccccc---hhhhhhhhhhheE---------
Confidence 699999999999999999987 999999999863211000 001110000 0000011111111
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
.|. .+.+..+. .....+.++ ..+++.+|.+.|.+.++.. ++++.+|+++ +++++++ ++|++++|++|
T Consensus 64 -~W~----~~~v~~~~--~~~~l~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~V 130 (370)
T TIGR01789 64 -DWP----GYEVRFPK--YRRKLKTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSV 130 (370)
T ss_pred -eCC----CCEEECcc--hhhhcCCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEE
Confidence 011 11122211 122234455 6899999999999888766 6668999988 4555555 78899999999
Q ss_pred EEccCCCch
Q 020277 237 VGADGIWSK 245 (328)
Q Consensus 237 V~AdG~~S~ 245 (328)
|+|+|.+|.
T Consensus 131 I~A~G~~s~ 139 (370)
T TIGR01789 131 IDCRGFKPS 139 (370)
T ss_pred EECCCCCCC
Confidence 999999975
No 62
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.48 E-value=7.6e-12 Score=115.76 Aligned_cols=174 Identities=24% Similarity=0.290 Sum_probs=98.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeec---hh--HHHHHHhcCchHHHHHHHhcc-ccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQ---SN--ALAALEAIDLDVAEEVMRAGC-VTG 152 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~---~~--~~~~l~~l~~g~~~~l~~~~~-~~~ 152 (328)
||+|||||++|+++|+.|+++|++|+|+|+.......++...+.+.-. .. ....+...+...+.++.+... ...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 799999999999999999999999999999944322232222223222 11 111122212245555533222 111
Q ss_pred cccccccc-C-----------------CCCc--eEEeecC-------Cch--hhhcCCCeEEEecHHHHHHHHHHhc--C
Q 020277 153 DRINGLVD-G-----------------ISGS--WYIKFDT-------FTP--AAEKGLPVTRVISRMTLQQILAKAV--G 201 (328)
Q Consensus 153 ~~~~~~~~-~-----------------~~~~--~~~~~~~-------~~~--~~~~~~~~~~~i~r~~l~~~L~~~~--~ 201 (328)
....+... . ..+. .....+. ... ....-.+....++...+.+.|.+.+ .
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 00000000 0 0000 0000000 000 0000113356788888888888764 2
Q ss_pred CceEecCCeEEEEEEeCCeEE-EEEecCcEEecCEEEEccCCCchhhhhhcCC
Q 020277 202 DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKVRKNLFGP 253 (328)
Q Consensus 202 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~~ 253 (328)
...++.+++|++++.++++|+ |++.+|. ++||.||.|+|.+|...-...+.
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred hhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 244788999999999999998 8888887 99999999999998763333333
No 63
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.44 E-value=4.4e-12 Score=115.07 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=137.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCccccCC----Ccccc-ceeechhHHHHHHhcCchHHHHHHH
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAIRGE----GQYRG-PIQIQSNALAALEAIDLDVAEEVMR 146 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~~~~~~----g~~~~-~~~l~~~~~~~l~~l~~g~~~~l~~ 146 (328)
+.++|+||||||+|++.|..|... -.+|.|+|....+.-+. ..+.. -..+.|+....++.+ +.|+.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~--~awd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI--GAWDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc--CHHHHhhh
Confidence 478999999999999999999874 46899999984421111 11111 136889999999998 88898876
Q ss_pred hcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHH-hc----CCceEecCCeEEEEEEe----
Q 020277 147 AGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK-AV----GDEIILNESNVIDFKDH---- 217 (328)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~----~~~~i~~~~~v~~i~~~---- 217 (328)
........+. .+++.... .+.++ ....+.+.++.+....++..|.. .+ ....+....++.+++..
T Consensus 113 ~R~~~~~~~~-v~Ds~s~a-~I~~~----~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~ 186 (481)
T KOG3855|consen 113 DRYQKFSRML-VWDSCSAA-LILFD----HDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLI 186 (481)
T ss_pred hcccccccee-eecccchh-hhhhc----cccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccC
Confidence 5544433332 22222211 12222 12223455678888888887774 22 23446677887777652
Q ss_pred ---CC-eEEEEEecCcEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCC-CcccccceEEEecCCeEEEE
Q 020277 218 ---GD-KVSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP-ADIESVGYRVFLGHKQYFVS 292 (328)
Q Consensus 218 ---~~-~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 292 (328)
++ .+.+++.||..+..|++|+|||.+|.+|+....+.......+++..+....-+ .......++- |-+.+.+.+
T Consensus 187 ~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQR-FlP~GpiAl 265 (481)
T KOG3855|consen 187 KNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQR-FLPTGPIAL 265 (481)
T ss_pred CCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHh-cCCCCceee
Confidence 22 35588899999999999999999999999875443333333344444433222 1112222333 345666888
Q ss_pred EeCCCCe--EEEE
Q 020277 293 SDVGAGK--MQWY 303 (328)
Q Consensus 293 ~P~~~g~--~~~~ 303 (328)
.|+++.. +.|.
T Consensus 266 lpl~d~~s~LvWS 278 (481)
T KOG3855|consen 266 LPLSDTLSSLVWS 278 (481)
T ss_pred cccccccccceee
Confidence 9999886 4554
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.43 E-value=3.9e-12 Score=112.86 Aligned_cols=137 Identities=26% Similarity=0.328 Sum_probs=88.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccce-----eechhHHHHHHhcCchHHHHHHHhccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
..+||+||||||+|+++|+.|++.|++|+|+|+..... .+.++++. .+.......|++++. .
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G--gg~~~gg~~~~~~~v~~~~~~~l~~~gv-----------~ 90 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG--GGMWGGGMLFNKIVVQEEADEILDEFGI-----------R 90 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC--CccccCccccccccchHHHHHHHHHCCC-----------C
Confidence 45799999999999999999999999999999986532 22122221 122222222322210 0
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCC-eEE-EEEe
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGD-KVS-VVLE 226 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~-v~~~ 226 (328)
+. .. ..+ .+.+++.++.+.|.+.+ ....++.+++|+++..+++ .+. +...
T Consensus 91 -------~~---------~~-------~~g---~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~ 144 (257)
T PRK04176 91 -------YK---------EV-------EDG---LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVIN 144 (257)
T ss_pred -------ce---------ee-------cCc---ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEc
Confidence 00 00 001 14577888888887764 2244788999999987555 332 2211
Q ss_pred -----------cCcEEecCEEEEccCCCchhhhhhc
Q 020277 227 -----------NGQCYAGDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 227 -----------~g~~i~ad~VV~AdG~~S~vr~~~~ 251 (328)
+..+++|++||.|+|.+|.+.+.+.
T Consensus 145 ~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 145 WTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred cccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 2247999999999999999998774
No 65
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.41 E-value=2.5e-11 Score=114.62 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=96.8
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCcc-ccCCCccccc----eeechhH-HHHHHhcCchHHHHHHHhcc
Q 020277 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSA-IRGEGQYRGP----IQIQSNA-LAALEAIDLDVAEEVMRAGC 149 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~~-~~~~g~~~~~----~~l~~~~-~~~l~~l~~g~~~~l~~~~~ 149 (328)
+||+|||||++|+++|+.|+++ |++|+|+|+.... ...++...+. +...+.. ...|...+..++.++.+...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 82 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG 82 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999 9999999998532 1122222111 1122222 12222222244444433211
Q ss_pred cccccccccc---c--------------CCCCceEEeecCCch---------hhhcCCCeEEEecHHHHHHHHHHhcC--
Q 020277 150 VTGDRINGLV---D--------------GISGSWYIKFDTFTP---------AAEKGLPVTRVISRMTLQQILAKAVG-- 201 (328)
Q Consensus 150 ~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~r~~l~~~L~~~~~-- 201 (328)
........+. + ...+......+.... ....-.|....++...+.+.|.+.+.
T Consensus 83 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~~ 162 (393)
T PRK11728 83 IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQAR 162 (393)
T ss_pred CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHhC
Confidence 0000000000 0 000000000000000 00001223356788888888877652
Q ss_pred CceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchhhhhhcC
Q 020277 202 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFG 252 (328)
Q Consensus 202 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~ 252 (328)
...++++++|++++.+++++.+.+.+| ++.||.||.|+|.+|.......+
T Consensus 163 Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g 212 (393)
T PRK11728 163 GGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAG 212 (393)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhC
Confidence 234778999999988888888877666 79999999999999954433333
No 66
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.40 E-value=4.8e-11 Score=112.03 Aligned_cols=172 Identities=18% Similarity=0.197 Sum_probs=92.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc-cCCCccccceee---chhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYRGPIQI---QSNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~-~~~g~~~~~~~l---~~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
+||+|||||++|+++|+.|+++|++|+|+|+..... .+++...+++.. .......+...+..++..+.+.......
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 489999999999999999999999999999975421 111111111111 1111111111122455555432110000
Q ss_pred ccccccc-C-C--------------CCceEEeecCCchh---------h---hcCCCeEEEecHHHHHHHHHHhc--CCc
Q 020277 154 RINGLVD-G-I--------------SGSWYIKFDTFTPA---------A---EKGLPVTRVISRMTLQQILAKAV--GDE 203 (328)
Q Consensus 154 ~~~~~~~-~-~--------------~~~~~~~~~~~~~~---------~---~~~~~~~~~i~r~~l~~~L~~~~--~~~ 203 (328)
...+... . . .+.....++..... . ..-.+....++...+.+.|.+.+ ...
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~ 160 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA 160 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence 0000000 0 0 00000000000000 0 00112234677888888876653 123
Q ss_pred eEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCc-hhhhhh
Q 020277 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS-KVRKNL 250 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S-~vr~~~ 250 (328)
.++.+++|++++.+++.+.+.+.++ ++.+|.||.|+|.++ .+++.+
T Consensus 161 ~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 161 TVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred EEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 4777899999998888888877665 799999999999984 555554
No 67
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.38 E-value=6.1e-11 Score=111.16 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=46.0
Q ss_pred EecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchh
Q 020277 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
.++...+...+.+.+ ....++++++|++++.+++++.+++.+| ++.+|.||.|+|.++.-
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKD 206 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence 566666666665443 2334777999999998888888887777 79999999999999753
No 68
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.35 E-value=3.7e-11 Score=106.33 Aligned_cols=135 Identities=21% Similarity=0.329 Sum_probs=86.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccce-----eechhHHHHHHhcCchHHHHHHHhccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
..+||+||||||+||++|+.|+++|++|+|+|+..... .+.++++. .+.....+.++.++ ..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G--gg~~~gg~~~~~~~~~~~~~~~l~~~g-----------i~ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG--GGSWGGGMLFSKIVVEKPAHEILDEFG-----------IR 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--ccccCCCcceecccccchHHHHHHHCC-----------CC
Confidence 46899999999999999999999999999999996532 22222221 11111122222110 00
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCC--eEE-EE
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD--KVS-VV 224 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~--~v~-v~ 224 (328)
+ ...+.. .+..++.++.+.|.+.+ + ..++++++|.++..+++ .+. +.
T Consensus 87 -------------------~------~~~~~g-~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~~~V~GVv 139 (254)
T TIGR00292 87 -------------------Y------EDEGDG-YVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDTVGVAGVV 139 (254)
T ss_pred -------------------e------eeccCc-eEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCCCceEEEE
Confidence 0 000111 13457778888887664 4 44788999999987766 333 22
Q ss_pred Ee-----------cCcEEecCEEEEccCCCchhhhhh
Q 020277 225 LE-----------NGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 225 ~~-----------~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
.. +..+++|++||.|+|..|.+.+.+
T Consensus 140 ~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 140 INWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred eCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 21 224799999999999999887765
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.35 E-value=2.1e-10 Score=111.67 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=92.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHH-------HHHh
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-------VMRA 147 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~-------l~~~ 147 (328)
...+||+|||||++|+++|+.|+++|++|+|+|+.... .|+++....+-..+.+.+......+..+ +.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~---~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ 80 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA---QGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA 80 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC---CCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999643 2222222223333344444332222221 1111
Q ss_pred ccccccccc-----------cc--------ccC------CCCceEEeec-C---Cchhhh--cC-CCeEEEecHHHHHHH
Q 020277 148 GCVTGDRIN-----------GL--------VDG------ISGSWYIKFD-T---FTPAAE--KG-LPVTRVISRMTLQQI 195 (328)
Q Consensus 148 ~~~~~~~~~-----------~~--------~~~------~~~~~~~~~~-~---~~~~~~--~~-~~~~~~i~r~~l~~~ 195 (328)
......... .+ .+. .......... . ...... .+ .+....++...+...
T Consensus 81 ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~ 160 (502)
T PRK13369 81 APHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVL 160 (502)
T ss_pred CCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHH
Confidence 100000000 00 000 0000000000 0 000000 00 011234677777766
Q ss_pred HHHhc--CCceEecCCeEEEEEEeCCeEEEEEecC----cEEecCEEEEccCCCchhh
Q 020277 196 LAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLVGADGIWSKVR 247 (328)
Q Consensus 196 L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i~ad~VV~AdG~~S~vr 247 (328)
|...+ ....++.+++|+++..+++.+.+++.++ .+++|+.||.|+|.||.--
T Consensus 161 l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 161 NALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred HHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 65543 2234777899999998887777777664 3699999999999998643
No 70
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.34 E-value=4e-10 Score=107.04 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=46.1
Q ss_pred ecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecC-----cEEecCEEEEccCCCchhhhhhcCC
Q 020277 187 ISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLVGADGIWSKVRKNLFGP 253 (328)
Q Consensus 187 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~i~ad~VV~AdG~~S~vr~~~~~~ 253 (328)
++...+...|.+.+ ....++++++|++++.+++.+++.+.++ .+++||.||.|+|.||.......+.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~ 267 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGD 267 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCC
Confidence 44455555565554 1234777899999998888877765443 3799999999999998644433333
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.33 E-value=2.5e-10 Score=111.22 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=44.2
Q ss_pred EecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEec---C--cEEecCEEEEccCCCchh
Q 020277 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---G--QCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~---g--~~i~ad~VV~AdG~~S~v 246 (328)
.++...+...|...+ ....++.+++|+++..+++.+.+++.+ | .+++|+.||.|+|.|+.-
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 456666665554432 223477789999998887777776654 4 379999999999999853
No 72
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.31 E-value=1.6e-10 Score=116.27 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=51.3
Q ss_pred EEecHHHHHHHHHHhcCC-ceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchh
Q 020277 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
..++...+.+.|.+.+.. ..++++++|++++.++++|+|.+.+|..++||.||.|+|.+|.-
T Consensus 403 G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 403 GWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred CeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence 467888898888887642 44777999999998888898888888778999999999999853
No 73
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.31 E-value=1.9e-13 Score=128.62 Aligned_cols=145 Identities=21% Similarity=0.226 Sum_probs=74.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccc-ceeec-----------------hhHHHHHHhcCch
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG-PIQIQ-----------------SNALAALEAIDLD 139 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~-~~~l~-----------------~~~~~~l~~l~~g 139 (328)
++|+|||||||||+||+.|++.|.+|+|+|++....+..-..+. ...+. ......|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 58999999999999999999999999999999763221111111 11111 1122334444211
Q ss_pred -HHHHHHHhcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEE
Q 020277 140 -VAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD 216 (328)
Q Consensus 140 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~ 216 (328)
+.+-+.+.+..... ...+..+...-...++.+.|.+.+. ...++++++|.+++.
T Consensus 81 d~~~ff~~~Gv~~~~-----------------------~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 81 DLIAFFEELGVPTKI-----------------------EEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK 137 (409)
T ss_dssp HHHHHHHHTT--EEE------------------------STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE
T ss_pred HHHHHHHhcCCeEEE-----------------------cCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee
Confidence 11112222111100 0011111112234566666666542 234889999999999
Q ss_pred eCCe-EEEEEecCcEEecCEEEEccCCCch
Q 020277 217 HGDK-VSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 217 ~~~~-v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
++++ +.|.++++.++.||.||+|+|..|.
T Consensus 138 ~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 8887 7788878889999999999998873
No 74
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.4e-11 Score=100.26 Aligned_cols=135 Identities=25% Similarity=0.346 Sum_probs=91.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccc-----eeechhHHHHHHhcCchHHHHHHHhccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
...||+||||||+||+||++|+++|.+|+|||++-.. +.|.++++ +.++..+.++|+.++..+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~--GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y---------- 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF--GGGIWGGGMLFNKIVVREEADEILDEFGIRY---------- 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc--CCcccccccccceeeecchHHHHHHHhCCcc----------
Confidence 3469999999999999999999999999999998654 34444444 345556666666652110
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCC-eEEEEE-
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD-KVSVVL- 225 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~-~v~v~~- 225 (328)
- . .+.+ .+..+..++...|..++ |.. ++.+..|+++...++ +|.-..
T Consensus 97 --------e--~--------------~e~g---~~v~ds~e~~skl~~~a~~aGak-i~n~~~veDvi~r~~~rVaGvVv 148 (262)
T COG1635 97 --------E--E--------------EEDG---YYVADSAEFASKLAARALDAGAK-IFNGVSVEDVIVRDDPRVAGVVV 148 (262)
T ss_pred --------e--e--------------cCCc---eEEecHHHHHHHHHHHHHhcCce-eeecceEEEEEEecCCceEEEEE
Confidence 0 0 0001 24566677777776653 544 666899999877666 443211
Q ss_pred ------e-----cCcEEecCEEEEccCCCchhhhhh
Q 020277 226 ------E-----NGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 226 ------~-----~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
. |--.++|++||.|+|....+-+.+
T Consensus 149 NWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 149 NWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1 234799999999999988776655
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.26 E-value=4.2e-11 Score=102.37 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=71.7
Q ss_pred EEECCChHHHHHHHHHHHCCCe-EEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHh-ccccccccccc
Q 020277 81 LVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRA-GCVTGDRINGL 158 (328)
Q Consensus 81 ~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~-~~~~~~~~~~~ 158 (328)
+||||||+||++|..|.++|.+ |+|+|+.... | +.|...... ...........
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~----G---------------------g~w~~~~~~~~~~~~~~~~~~ 55 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP----G---------------------GVWRRYYSYTRLHSPSFFSSD 55 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS----T---------------------THHHCH-TTTT-BSSSCCTGG
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC----C---------------------CeeEEeCCCCccccCcccccc
Confidence 6999999999999999999999 9999998642 2 111111000 00000000000
Q ss_pred ccCCCCceEEeecCCchhhh--cCCCeEEEecHHHHHHHHHHh---cCCceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 159 VDGISGSWYIKFDTFTPAAE--KGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
. + +..+........ ...+ .....+.++.+.|.+. .+.. ++++++|++++.++++|+|++.++.+++|
T Consensus 56 ~----~--~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~~l~-i~~~~~V~~v~~~~~~w~v~~~~~~~~~a 127 (203)
T PF13738_consen 56 F----G--LPDFESFSFDDSPEWRWP-HDFPSGEEVLDYLQEYAERFGLE-IRFNTRVESVRRDGDGWTVTTRDGRTIRA 127 (203)
T ss_dssp S----S----CCCHSCHHHHHHHHHS-BSSEBHHHHHHHHHHHHHHTTGG-EETS--EEEEEEETTTEEEEETTS-EEEE
T ss_pred c----c--CCcccccccccCCCCCCC-cccCCHHHHHHHHHHHHhhcCcc-cccCCEEEEEEEeccEEEEEEEecceeee
Confidence 0 0 000000000000 0000 1235566666666544 3434 88999999999999999999999989999
Q ss_pred CEEEEccCCCchhhh
Q 020277 234 DLLVGADGIWSKVRK 248 (328)
Q Consensus 234 d~VV~AdG~~S~vr~ 248 (328)
|.||.|+|..|.-+.
T Consensus 128 ~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 128 DRVVLATGHYSHPRI 142 (203)
T ss_dssp EEEEE---SSCSB--
T ss_pred eeEEEeeeccCCCCc
Confidence 999999998765443
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.25 E-value=1.7e-10 Score=97.30 Aligned_cols=135 Identities=22% Similarity=0.291 Sum_probs=84.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccc-----eeechhHHHHHHhcCchHHHHHHHhccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
..+||+||||||+||+||+.|++.|++|.|+|++.... .+.++++ +.++..+..+|+.++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G--Gg~~~Gg~lf~~iVVq~~a~~iL~elgi~y---------- 83 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG--GGMWGGGMLFNKIVVQEEADEILDELGIPY---------- 83 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B--TTTTS-CTT---EEEETTTHHHHHHHT-------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC--ccccccccccchhhhhhhHHHHHHhCCcee----------
Confidence 45799999999999999999999999999999986532 3333332 567777777777762210
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc-C-CceEecCCeEEEEEEeC-CeEEEEEe-
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-G-DEIILNESNVIDFKDHG-DKVSVVLE- 226 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~-~~~i~~~~~v~~i~~~~-~~v~v~~~- 226 (328)
. . .+ +..+..+..++...|..++ . ...++....|+++...+ +++.-...
T Consensus 84 --------~---------~---------~~-~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViN 136 (230)
T PF01946_consen 84 --------E---------E---------YG-DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVIN 136 (230)
T ss_dssp --------E---------E----------S-SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEE
T ss_pred --------E---------E---------eC-CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEE
Confidence 0 0 00 1125667777777776653 2 23477788999987766 55542221
Q ss_pred -----------cCcEEecCEEEEccCCCchhhhh
Q 020277 227 -----------NGQCYAGDLLVGADGIWSKVRKN 249 (328)
Q Consensus 227 -----------~g~~i~ad~VV~AdG~~S~vr~~ 249 (328)
|--+++|++||.|+|..+.+-+.
T Consensus 137 Wt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 137 WTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EHHHHTT--T-B-EEEEESEEEE---SSSSSTSH
T ss_pred ehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHH
Confidence 22379999999999998855443
No 77
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.20 E-value=1.1e-09 Score=109.04 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=33.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+||+|||||+.|+++|+.|+++|++|+|+|+...
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 458999999999999999999999999999999854
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=1.8e-10 Score=110.58 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcC-------chHHHHHHH
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAID-------LDVAEEVMR 146 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~-------~g~~~~l~~ 146 (328)
+...++|+||||||+||++|..|.+.|++|+|||+.... .|. ....++...-...+. ..+++.+..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v---GG~----W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t 79 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV---GGL----WVYTPKSESDPLSLDPTRSIVHSSVYESLRT 79 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC---cce----eecCCCcCCCccccCCCCcccchhhhhhhhc
Confidence 345689999999999999999999999999999998642 121 111111100000000 011111111
Q ss_pred hcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CC-ceEecCCeEEEEEEeCCeEE
Q 020277 147 AGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GD-EIILNESNVIDFKDHGDKVS 222 (328)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~-~~i~~~~~v~~i~~~~~~v~ 222 (328)
... ....++.+ ++................++.++.+.|.+.+ +. ..++++++|++++.++++|+
T Consensus 80 n~p---~~~m~f~d---------fp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~ 147 (461)
T PLN02172 80 NLP---RECMGYRD---------FPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWR 147 (461)
T ss_pred cCC---HhhccCCC---------CCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEE
Confidence 100 00001110 0000000000000011335677777776654 32 34889999999998888899
Q ss_pred EEEecCc----EEecCEEEEccCCCch
Q 020277 223 VVLENGQ----CYAGDLLVGADGIWSK 245 (328)
Q Consensus 223 v~~~~g~----~i~ad~VV~AdG~~S~ 245 (328)
|++.++. +..+|.||+|+|..+.
T Consensus 148 V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 148 VQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred EEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 8886532 4679999999998754
No 79
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.18 E-value=4.1e-09 Score=100.24 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=44.3
Q ss_pred EecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchh
Q 020277 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
.++...+.+.|.+.+ ....++++++|++++.+++++.....++.+++||.||.|+|.+|.-
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYSTA 259 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcchHH
Confidence 456667777776654 1234778899999998877765333345589999999999999854
No 80
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.18 E-value=2.5e-09 Score=101.51 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHC-CC-eEEEEccCCc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~-g~-~v~~~~~~~~ 111 (328)
...+.+||+|||||++|+++|+.|+++ |. +|+|+|+...
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 345678999999999999999999995 95 8999999854
No 81
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.17 E-value=2.3e-09 Score=100.79 Aligned_cols=68 Identities=26% Similarity=0.337 Sum_probs=50.3
Q ss_pred EEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchhhhhhcC
Q 020277 184 TRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFG 252 (328)
Q Consensus 184 ~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~ 252 (328)
...++...+.+.|.+.+ |...+..++.+..++.+.+.+.|.+.+|. ++||.||.|+|.++.......+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 34677777777777654 54567778999998874345667777776 9999999999999877654444
No 82
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=3e-09 Score=101.84 Aligned_cols=172 Identities=22% Similarity=0.285 Sum_probs=101.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCch-HHHHHHHhcc-----
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD-VAEEVMRAGC----- 149 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g-~~~~l~~~~~----- 149 (328)
...||+|||||+.|+-+|..++.+|++|+|+|++... +|+++.+-.+-+.+++.|.+.... ..+.+.+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A---sGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA---SGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc---CcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999764 455555667788888888876555 3333333221
Q ss_pred -cccccccccc-------------------cCCCC-------ceEEeec----CCchhhhcCC-----CeEEEecHHHHH
Q 020277 150 -VTGDRINGLV-------------------DGISG-------SWYIKFD----TFTPAAEKGL-----PVTRVISRMTLQ 193 (328)
Q Consensus 150 -~~~~~~~~~~-------------------~~~~~-------~~~~~~~----~~~~~~~~~~-----~~~~~i~r~~l~ 193 (328)
........++ +...+ ....... ..+.....+. .....++..+|.
T Consensus 88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv 167 (532)
T COG0578 88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV 167 (532)
T ss_pred ccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence 0000000000 00000 0000000 0000000000 012345555554
Q ss_pred HHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecC---c--EEecCEEEEccCCCchhhhhh
Q 020277 194 QILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG---Q--CYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 194 ~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~--~i~ad~VV~AdG~~S~vr~~~ 250 (328)
-.+...+ ....++..++|+++..+++.+-|...|. + +++|+.||.|+|+|+---...
T Consensus 168 ~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~ 231 (532)
T COG0578 168 AANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEM 231 (532)
T ss_pred HHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHh
Confidence 4433322 2233777899999999888444555543 2 699999999999999653333
No 83
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.14 E-value=3.4e-09 Score=99.42 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=104.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCccc-----cCCCccccceeechhHHHH-HHhcCchHHHHHHHh
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAI-----RGEGQYRGPIQIQSNALAA-LEAIDLDVAEEVMRA 147 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~~~-----~~~g~~~~~~~l~~~~~~~-l~~l~~g~~~~l~~~ 147 (328)
..+||+|||||+.|+++|+.|++.+ ++|+|+|+..... .-+|..+.++...|....+ +...+-..+..+-++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999986532 2233333455555553222 221111111222221
Q ss_pred ccccccccccc---------------cc-CCCCce--EEeec--------CCch---hhhcCCCeEEEecHHHHHHHHHH
Q 020277 148 GCVTGDRINGL---------------VD-GISGSW--YIKFD--------TFTP---AAEKGLPVTRVISRMTLQQILAK 198 (328)
Q Consensus 148 ~~~~~~~~~~~---------------~~-~~~~~~--~~~~~--------~~~~---~~~~~~~~~~~i~r~~l~~~L~~ 198 (328)
..........+ +. ...... ....+ .... ....-.|.+..++..++...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 11111000000 00 000000 00000 0000 00011233457788888888877
Q ss_pred hc--CCceEecCCeEEEEEEeCC-eEEEEEecCcE-EecCEEEEccCCCchhhhhhcCCC
Q 020277 199 AV--GDEIILNESNVIDFKDHGD-KVSVVLENGQC-YAGDLLVGADGIWSKVRKNLFGPQ 254 (328)
Q Consensus 199 ~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~-i~ad~VV~AdG~~S~vr~~~~~~~ 254 (328)
.+ ....++++++|++++..++ ...+.+.+|++ ++|+.||.|.|..|.-..++.+..
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~ 221 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIP 221 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCC
Confidence 65 2345899999999999888 45677778876 999999999999997766665443
No 84
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.13 E-value=6.7e-09 Score=97.07 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=86.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeech---hHHHHHHhcCchHHHHHHHhcccccc-
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS---NALAALEAIDLDVAEEVMRAGCVTGD- 153 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~---~~~~~l~~l~~g~~~~l~~~~~~~~~- 153 (328)
+||+|||||++|+++|+.|+++|++|+|+|+.......++...+.+.... .....+...+..++.++.+.......
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 80 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE 80 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999999999998643222222222221111 10111111112344444332110000
Q ss_pred --cc------------cccccC--CCCceEEeecCCch---------hh---hcCCCeEEEecHHHHHHHHHHhc---CC
Q 020277 154 --RI------------NGLVDG--ISGSWYIKFDTFTP---------AA---EKGLPVTRVISRMTLQQILAKAV---GD 202 (328)
Q Consensus 154 --~~------------~~~~~~--~~~~~~~~~~~~~~---------~~---~~~~~~~~~i~r~~l~~~L~~~~---~~ 202 (328)
.+ ..+... ..+.....++.... .. ..-.+....++...+...|.+.+ ..
T Consensus 81 ~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~G 160 (365)
T TIGR03364 81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG 160 (365)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCC
Confidence 00 000000 00100000000000 00 00112234678888888877654 13
Q ss_pred ceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCch
Q 020277 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 203 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
..++.+++|++++.+ .|++.+| +++||.||.|+|.+|.
T Consensus 161 v~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 161 VEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred CEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 447778999999642 4556666 5789999999999975
No 85
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.13 E-value=2.8e-09 Score=102.77 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred EEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCch
Q 020277 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
..++...+.+.|.+.+. ...++.+++|++++. ++.+.|++.+| +++||.||.|+|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 46788888888876641 234788999999975 45566776666 6999999999999975
No 86
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.10 E-value=3.7e-10 Score=109.97 Aligned_cols=140 Identities=24% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.|+|+|||||++||++|..|.+.|++|++||+.+. .| |+|..-..........+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~----iG---------------------G~W~~~~~~~~g~~~~y~ 55 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD----IG---------------------GLWRYTENPEDGRSSVYD 55 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS----SS---------------------GGGCHSTTCCCSEGGGST
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC----CC---------------------ccCeeCCcCCCCcccccc
Confidence 37999999999999999999999999999999865 22 111100000000000000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CC-ceEecCCeEEEEEEeC-----CeEEEEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GD-EIILNESNVIDFKDHG-----DKVSVVLEN 227 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~-~~i~~~~~v~~i~~~~-----~~v~v~~~~ 227 (328)
.+.. ........+..+..+ .+.| ...++.++.+.|.+-+ +- ..|+++++|++++..+ ++|+|++.+
T Consensus 56 sl~~-n~sk~~~~fsdfp~p--~~~p--~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~ 130 (531)
T PF00743_consen 56 SLHT-NTSKEMMAFSDFPFP--EDYP--DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN 130 (531)
T ss_dssp T-B--SS-GGGSCCTTS-HC--CCCS--SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT
T ss_pred ceEE-eeCchHhcCCCcCCC--CCCC--CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec
Confidence 0000 111111222222211 1223 2567889999987654 22 4599999999998764 469888764
Q ss_pred Cc---EEecCEEEEccCCCchh
Q 020277 228 GQ---CYAGDLLVGADGIWSKV 246 (328)
Q Consensus 228 g~---~i~ad~VV~AdG~~S~v 246 (328)
++ +..+|.||.|+|.++.-
T Consensus 131 ~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 131 DGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp TTEEEEEEECEEEEEE-SSSCE
T ss_pred CCeEEEEEeCeEEEcCCCcCCC
Confidence 32 45789999999998844
No 87
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.09 E-value=3e-09 Score=103.80 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=87.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccccee-ec-hhHHHHHHhcCchHHHHHHHhcccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQ-SNALAALEAIDLDVAEEVMRAGCVTGD 153 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~-l~-~~~~~~l~~l~~g~~~~l~~~~~~~~~ 153 (328)
..+||+|||||+||++||+.+++.|.+|.|+|+.......-+ +...+. +. ...++-++.++ +............
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~-CnpsiGG~akg~lvrEidalG-g~~g~~~d~~giq-- 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS-CNPAIGGIAKGHLVREIDALG-GEMGKAIDKTGIQ-- 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC-CccccccchhhHHHHHHHhcC-CHHHHHHhhccCc--
Confidence 458999999999999999999999999999998742211000 000010 00 01122233332 1222222111100
Q ss_pred cccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCeEE-EEEecCc
Q 020277 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENGQ 229 (328)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~~g~ 229 (328)
+. ..+...+. . ...+ ...+++..+.+.|.+.+. +..+ +...|+++..+++.+. |.+.+|.
T Consensus 79 -~r-~ln~skGp-----------A-V~s~-RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~ 142 (618)
T PRK05192 79 -FR-MLNTSKGP-----------A-VRAL-RAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGL 142 (618)
T ss_pred -ee-ecccCCCC-----------c-eeCc-HHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCC
Confidence 00 00000000 0 0001 125777777777766552 3334 4678999887777765 7788899
Q ss_pred EEecCEEEEccCCCchhh
Q 020277 230 CYAGDLLVGADGIWSKVR 247 (328)
Q Consensus 230 ~i~ad~VV~AdG~~S~vr 247 (328)
.+.|+.||+|+|.++.-.
T Consensus 143 ~I~Ak~VIlATGTFL~g~ 160 (618)
T PRK05192 143 EFRAKAVVLTTGTFLRGK 160 (618)
T ss_pred EEECCEEEEeeCcchhcC
Confidence 999999999999876443
No 88
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.09 E-value=9e-10 Score=95.18 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=81.8
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc-----c--CCCccc-cceeechhHHHHHHhcCchHHHHHHHhccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-----R--GEGQYR-GPIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~-----~--~~g~~~-~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
+|+|||+|++|++||+.|+..|++|+||||+..-. + ..+.+. +.-.+.++.-.+++.+ +.+.+.+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-----e~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-----EALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-----HHHHhCCce
Confidence 59999999999999999999999999999985411 0 011111 1123444444444322 333333322
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC-c
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG-Q 229 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~ 229 (328)
.... ...+.. ++. .........|+...-.-..|.+.|... -.+.++++|+.+...++.|+++.++| +
T Consensus 78 ~~W~-~~~~~~-~~~-------~~~~~~d~~pyvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~~W~l~~~~g~~ 145 (331)
T COG3380 78 DVWT-PAVWTF-TGD-------GSPPRGDEDPYVGEPGMSALAKFLATD---LTVVLETRVTEVARTDNDWTLHTDDGTR 145 (331)
T ss_pred eecc-cccccc-ccC-------CCCCCCCCCccccCcchHHHHHHHhcc---chhhhhhhhhhheecCCeeEEEecCCCc
Confidence 1110 001110 000 001111112211111223344444432 23667999999999999999999776 4
Q ss_pred EEecCEEEEccCC
Q 020277 230 CYAGDLLVGADGI 242 (328)
Q Consensus 230 ~i~ad~VV~AdG~ 242 (328)
...+|.||+|--+
T Consensus 146 ~~~~d~vvla~PA 158 (331)
T COG3380 146 HTQFDDVVLAIPA 158 (331)
T ss_pred ccccceEEEecCC
Confidence 6789999988544
No 89
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.08 E-value=3.1e-09 Score=104.40 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=49.4
Q ss_pred EEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEE-EEEe---cC--cEEecCEEEEccCCCchhhhhhcCCCCc
Q 020277 185 RVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLVGADGIWSKVRKNLFGPQEA 256 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~i~ad~VV~AdG~~S~vr~~~~~~~~~ 256 (328)
..++...|...+...+ ....++.+++|+++..+++++. +++. ++ .+++|+.||.|+|.||.--..+.+...+
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~ 223 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIR 223 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCc
Confidence 3677788877766543 1234777899999988777654 4442 23 4799999999999998654444444333
Q ss_pred e
Q 020277 257 I 257 (328)
Q Consensus 257 ~ 257 (328)
.
T Consensus 224 i 224 (546)
T PRK11101 224 M 224 (546)
T ss_pred e
Confidence 3
No 90
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.07 E-value=3.8e-10 Score=106.76 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=79.8
Q ss_pred EEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccccee-echh--HHHHHHhcC--chHHHHHHHhcccccccc
Q 020277 81 LVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQSN--ALAALEAID--LDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 81 ~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~-l~~~--~~~~l~~l~--~g~~~~l~~~~~~~~~~~ 155 (328)
+|||||++||++|+.|+++|++|+|+|+.+.........+++.. +... .....+..+ .......... ... ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR-FSN-KDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHh-CCH-HHH
Confidence 59999999999999999999999999998653222112222221 1110 111112111 0111111000 000 000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
..+.. ..+-.+...+ .+..+...-....+.+.|.+.+ ....++++++|++++.+++.+.+++ +++++.+
T Consensus 79 ~~~~~-~~Gv~~~~~~-------~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~a 149 (400)
T TIGR00275 79 IDFFE-SLGLELKVEE-------DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEA 149 (400)
T ss_pred HHHHH-HcCCeeEEec-------CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEc
Confidence 00110 0010000000 0100001112345555665554 1244788999999988777777766 5668999
Q ss_pred CEEEEccCCCc
Q 020277 234 DLLVGADGIWS 244 (328)
Q Consensus 234 d~VV~AdG~~S 244 (328)
|.||.|+|.+|
T Consensus 150 d~VIlAtG~~s 160 (400)
T TIGR00275 150 DKVILATGGLS 160 (400)
T ss_pred CEEEECCCCcc
Confidence 99999999987
No 91
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.07 E-value=6.6e-09 Score=96.36 Aligned_cols=144 Identities=21% Similarity=0.289 Sum_probs=81.6
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeech--hHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS--NALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~--~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
||+|||||.||+.||+.+++.|.+|.|+.........-. +..++.-.. ...+-++.++ +..-.+.+...... .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalg-g~m~~~aD~~~i~~-~-- 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALG-GLMGRAADETGIHF-R-- 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT--SHHHHHHHHEEEE-E--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhh-hHHHHHHhHhhhhh-h--
Confidence 799999999999999999999999999943322111100 111121111 1233345554 22222222111000 0
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-EEEecCcEEe
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLENGQCYA 232 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~ 232 (328)
+.+... ...+......++|..+.+.+.+.+ ++..+. ..+|+++..+++.+. |.+.+|..+.
T Consensus 76 -~lN~sk-------------Gpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~ 140 (392)
T PF01134_consen 76 -MLNRSK-------------GPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIE 140 (392)
T ss_dssp -EESTTS--------------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEE
T ss_pred -cccccC-------------CCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEe
Confidence 000000 001112235899999999988776 333344 689999998888876 7788999999
Q ss_pred cCEEEEccCC
Q 020277 233 GDLLVGADGI 242 (328)
Q Consensus 233 ad~VV~AdG~ 242 (328)
+|.||+|+|.
T Consensus 141 a~~vVlaTGt 150 (392)
T PF01134_consen 141 ADAVVLATGT 150 (392)
T ss_dssp ECEEEE-TTT
T ss_pred cCEEEEeccc
Confidence 9999999998
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=8.5e-10 Score=104.53 Aligned_cols=140 Identities=21% Similarity=0.203 Sum_probs=88.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+||||||+||++|..|.+.|++|+||||.... .| .-...++..... ..+.+.+..+.. ..+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i---GG----lW~y~~~~~~~~----ss~Y~~l~tn~p---Ke~ 70 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI---GG----LWKYTENVEVVH----SSVYKSLRTNLP---KEM 70 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc---cc----eEeecCcccccc----cchhhhhhccCC---hhh
Confidence 4689999999999999999999999999999999752 11 112222211000 012222222111 111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC----ceEecCCeEEEEEEeC-CeEEEEEecC--
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVLENG-- 228 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-~~v~v~~~~g-- 228 (328)
.++.+ ++ .... .+ .+.-++.++.+.|.+.+.. ..++++++|..++... +.|.|.+.++
T Consensus 71 ~~~~d---------fp---f~~~--~~-~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~ 135 (448)
T KOG1399|consen 71 MGYSD---------FP---FPER--DP-RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGT 135 (448)
T ss_pred hcCCC---------CC---Cccc--Cc-ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCc
Confidence 11111 11 1111 11 2345677888888776522 4489999999999888 7999988765
Q ss_pred --cEEecCEEEEccCCCc
Q 020277 229 --QCYAGDLLVGADGIWS 244 (328)
Q Consensus 229 --~~i~ad~VV~AdG~~S 244 (328)
.+.-+|.||+|+|.+.
T Consensus 136 ~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 136 QIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred ceeEEEeeEEEEcccCcC
Confidence 3678999999999984
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.02 E-value=5.7e-09 Score=100.58 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=52.0
Q ss_pred CeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEe-CCeEEEEE---ecCc--EEecCEEEEccCCCchhhhhh
Q 020277 182 PVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 182 ~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~v~v~~---~~g~--~i~ad~VV~AdG~~S~vr~~~ 250 (328)
|.+..++...|.+.|.+.+ ....++++++|++++.+ +++|++++ .+++ +++||+||.|.|.||.--...
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~ 253 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQK 253 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 4456788889988887765 23558889999999877 66787763 3342 689999999999999644433
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.99 E-value=5.8e-09 Score=94.43 Aligned_cols=110 Identities=25% Similarity=0.401 Sum_probs=72.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~ 157 (328)
++|+|||||++||++|..|++.|++|+|+|+... .|. +... . .+ ..+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg~----~~~~------------~---~~--------~~~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP----GGQ----LTTT------------T---EV--------ENYPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC----Ccc----eeec------------c---cc--------cccCC
Confidence 5899999999999999999999999999998752 111 1000 0 00 00000
Q ss_pred cccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHH---hcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecC
Q 020277 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK---AVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (328)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~---~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad 234 (328)
+ + ..+...++...+.+ ..+.. +++ .+|++++.+++.+.+++.++.++++|
T Consensus 50 ~-----------------------~--~~~~~~~~~~~l~~~~~~~gv~-~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d 102 (300)
T TIGR01292 50 F-----------------------P--EGISGPELMEKMKEQAVKFGAE-IIY-EEVIKVDLSDRPFKVKTGDGKEYTAK 102 (300)
T ss_pred C-----------------------C--CCCChHHHHHHHHHHHHHcCCe-EEE-EEEEEEEecCCeeEEEeCCCCEEEeC
Confidence 0 0 01111223333332 23444 555 78999998888888888888899999
Q ss_pred EEEEccCCCch
Q 020277 235 LLVGADGIWSK 245 (328)
Q Consensus 235 ~VV~AdG~~S~ 245 (328)
.||.|+|.+..
T Consensus 103 ~liiAtG~~~~ 113 (300)
T TIGR01292 103 AVIIATGASAR 113 (300)
T ss_pred EEEECCCCCcc
Confidence 99999998653
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.97 E-value=5.8e-08 Score=94.09 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=50.9
Q ss_pred CeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCe-EEEEEe---cCc--EEecCEEEEccCCCchhhhhh
Q 020277 182 PVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 182 ~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~i~ad~VV~AdG~~S~vr~~~ 250 (328)
|....++...+.+.|.+.+ +...++++++|++++.++++ |.+++. +|+ +++|++||.|+|.||.--...
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~ 252 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQK 252 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 3355788889999987765 33458889999999985554 766654 353 699999999999998544433
No 96
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.95 E-value=9e-09 Score=98.44 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=79.4
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~ 152 (328)
..+..+|+|||||++||++|+.|.+.|.. ++|||++... .|. |..-
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~---Gg~----------------------W~~~-------- 51 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV---GGT----------------------WRYN-------- 51 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc---CCc----------------------chhc--------
Confidence 34678999999999999999999999998 9999999642 111 0000
Q ss_pred ccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEe--CCeEEEEEecCcE
Q 020277 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDH--GDKVSVVLENGQC 230 (328)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~~~~g~~ 230 (328)
...++. .....+...++..........+. ..--+..+...+.+.--...+.++++|..+..+ ++.|+|+++++.+
T Consensus 52 -ry~~l~-~~~p~~~~~~~~~p~~~~~~~~~-~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~ 128 (443)
T COG2072 52 -RYPGLR-LDSPKWLLGFPFLPFRWDEAFAP-FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT 128 (443)
T ss_pred -cCCceE-ECCchheeccCCCccCCcccCCC-cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe
Confidence 000000 01112222222221110111111 111344445554333223447777777776654 4579999988865
Q ss_pred --EecCEEEEccCCCch
Q 020277 231 --YAGDLLVGADGIWSK 245 (328)
Q Consensus 231 --i~ad~VV~AdG~~S~ 245 (328)
++||.||.|+|..|.
T Consensus 129 ~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 129 GELTADFVVVATGHLSE 145 (443)
T ss_pred eeEecCEEEEeecCCCC
Confidence 559999999999663
No 97
>PLN02661 Putative thiazole synthesis
Probab=98.94 E-value=7.5e-08 Score=88.14 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCeEEEEccCCcc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 112 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~~~~~ 112 (328)
....||+|||||++|+++|+.|++. |++|+|+|+....
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3467999999999999999999986 8999999997643
No 98
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.93 E-value=1.2e-09 Score=104.24 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=36.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccccc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 158 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~~~ 158 (328)
||+||||||+|++||+.+++.|.+|.|+|+..... +....++...+....... .+-.++..++.+........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lG-G~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~~---- 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLG-GMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGGY---- 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSST-GGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCC-CcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhccc----
Confidence 79999999999999999999999999999986521 111111111222211110 11114555554432110000
Q ss_pred ccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEE-EEEec---CcEEe
Q 020277 159 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLEN---GQCYA 232 (328)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~---g~~i~ 232 (328)
.......+.. ...+++..+...|.+.+ ....+++++.|.++..++++++ |.+.+ ..+++
T Consensus 74 ~~~~~~~~~~---------------~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~ 138 (428)
T PF12831_consen 74 PQEDRYGWVS---------------NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIR 138 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc---------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000000 01233333333333332 1234788999999998886654 44433 35899
Q ss_pred cCEEEEccCCCc
Q 020277 233 GDLLVGADGIWS 244 (328)
Q Consensus 233 ad~VV~AdG~~S 244 (328)
|+++|.|+|-..
T Consensus 139 A~~~IDaTG~g~ 150 (428)
T PF12831_consen 139 AKVFIDATGDGD 150 (428)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999999543
No 99
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.92 E-value=5.4e-09 Score=107.18 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=57.0
Q ss_pred CCccCCCCCcccccCccccccccccCCCCccchhHhHHhHHh----cCC-CCCCC-CCCCCCeEEEECCChHHHHHHHHH
Q 020277 23 PVPVYKHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAAVA----ESP-TNNSD-SENKKLRILVAGGGIGGLVFALAA 96 (328)
Q Consensus 23 ~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~-~~~~~~~v~i~G~g~~g~~~a~~l 96 (328)
|.+...|+.+.. .|...|.|...+.++......+.... ... ....+ .+.++++|+|||||||||++|+.|
T Consensus 483 PlP~icGrVCph----~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L 558 (1019)
T PRK09853 483 ALPAITGHICDH----QCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL 558 (1019)
T ss_pred ChhhHhhCcCCc----hhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence 344455665443 56665666666677766554444411 111 11111 235789999999999999999999
Q ss_pred HHCCCeEEEEccCCc
Q 020277 97 KRKGFEVLVFEKDMS 111 (328)
Q Consensus 97 ~~~g~~v~~~~~~~~ 111 (328)
+++|++|+|||+.+.
T Consensus 559 ar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 559 ARAGHPVTVFEREEN 573 (1019)
T ss_pred HHcCCeEEEEecccc
Confidence 999999999998754
No 100
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.92 E-value=4e-08 Score=95.02 Aligned_cols=71 Identities=13% Similarity=0.036 Sum_probs=51.1
Q ss_pred CeEEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeC-CeEEEEEe---cC--cEEecCEEEEccCCCchhhhhhcC
Q 020277 182 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLLVGADGIWSKVRKNLFG 252 (328)
Q Consensus 182 ~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~v~~~---~g--~~i~ad~VV~AdG~~S~vr~~~~~ 252 (328)
|....++...+.+.|.+.+. ...++++++|++++.++ ++|.+++. +| .+++||+||.|.|.||.--....+
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G 248 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG 248 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence 33457899999999987752 24588899999998865 45666543 23 369999999999999854443333
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.92 E-value=1.2e-08 Score=99.69 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=75.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...++|+||||||+|+++|..|++.|++|+|++... .|+ . .. .. ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-----GG~----~-~~--------~~--~~-------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-----GGQ----V-LD--------TM--GI-------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CCe----e-ec--------cC--cc--------------
Confidence 446899999999999999999999999999997541 121 1 00 00 00
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHh---cCCceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
..+. +.+ .....++.+.|.+. .+. .++.+++|+++..+++.+.+.+.+|.++
T Consensus 255 -~~~~--------------------~~~---~~~~~~l~~~l~~~~~~~gv-~i~~~~~V~~I~~~~~~~~V~~~~g~~i 309 (517)
T PRK15317 255 -ENFI--------------------SVP---ETEGPKLAAALEEHVKEYDV-DIMNLQRASKLEPAAGLIEVELANGAVL 309 (517)
T ss_pred -cccC--------------------CCC---CCCHHHHHHHHHHHHHHCCC-EEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 0000 000 11223444444443 343 3677899999998777888888888899
Q ss_pred ecCEEEEccCCCc
Q 020277 232 AGDLLVGADGIWS 244 (328)
Q Consensus 232 ~ad~VV~AdG~~S 244 (328)
.+|.||+|+|..+
T Consensus 310 ~a~~vViAtG~~~ 322 (517)
T PRK15317 310 KAKTVILATGARW 322 (517)
T ss_pred EcCEEEECCCCCc
Confidence 9999999999976
No 102
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.91 E-value=7.2e-09 Score=107.20 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=34.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.++++|+|||+|||||+||..|+++||+|||||+...
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 34689999999999999999999999999999998753
No 103
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.90 E-value=2.4e-08 Score=95.81 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHHCC-CeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~ 111 (328)
||+|||+|.+|++||+.++++| .+|+|+|+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 6999999999999999999999 99999999865
No 104
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.90 E-value=4.6e-08 Score=94.51 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|++||++|+.+++.|.+|+|+|+.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 357999999999999999999999999999999864
No 105
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.89 E-value=3.8e-08 Score=95.15 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=49.3
Q ss_pred EEecHHHHHHHHHHhc-------CC-ceEecCCeEEEEEEe-CCeEEEEEecCcEEecCEEEEccCCCchhhhhh
Q 020277 185 RVISRMTLQQILAKAV-------GD-EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~-------~~-~~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
..++...+.+.|.+.+ |. ..++++++|++++.+ ++.+.|++.+| +++||.||.|.|.||......
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~ 279 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQK 279 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHH
Confidence 4678888888876654 22 347889999999987 44577777666 699999999999999654433
No 106
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.88 E-value=3.4e-08 Score=81.01 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=42.9
Q ss_pred EecHHHHHHHHHHh-------c--CCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCC
Q 020277 186 VISRMTLQQILAKA-------V--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 242 (328)
Q Consensus 186 ~i~r~~l~~~L~~~-------~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~ 242 (328)
.+.|..+-+.|.+. + +..+.+...+|+++...++++.+.+.+|..+.+|.||+|+|.
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45565555555433 2 223445568999999999999999999999999999999995
No 107
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.87 E-value=8.4e-08 Score=93.21 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-EEEec-C--cEEecCEEEEccCCCchhhh
Q 020277 190 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLVGADGIWSKVRK 248 (328)
Q Consensus 190 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~-g--~~i~ad~VV~AdG~~S~vr~ 248 (328)
..+.+.|.+.+ ....+++++.|+++..+++.+. +...+ + ..+.++.||+|+|.+|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 45667776654 2345888999999987766654 43333 3 36899999999999998654
No 108
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.86 E-value=5.8e-08 Score=95.39 Aligned_cols=36 Identities=42% Similarity=0.606 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 357999999999999999999999999999999864
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.85 E-value=2.4e-08 Score=97.57 Aligned_cols=111 Identities=22% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
...++|+||||||+|++||..|++.|++|+|++... .|+ .. . .. +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-----GG~----~~-~--------~~--~--------------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-----GGQ----VK-D--------TV--G--------------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CCc----cc-c--------Cc--C---------------
Confidence 456899999999999999999999999999997431 221 00 0 00 0
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHh---cCCceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
+..+. +.+ .....++.+.|.+. .+. .++.+++|+++..+++.+.+++.+|.++
T Consensus 255 ~~~~~--------------------~~~---~~~~~~l~~~l~~~l~~~gv-~i~~~~~V~~I~~~~~~~~v~~~~g~~i 310 (515)
T TIGR03140 255 IENLI--------------------SVP---YTTGSQLAANLEEHIKQYPI-DLMENQRAKKIETEDGLIVVTLESGEVL 310 (515)
T ss_pred ccccc--------------------ccC---CCCHHHHHHHHHHHHHHhCC-eEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 00000 000 01122333333332 233 3777899999988777788888888899
Q ss_pred ecCEEEEccCCCc
Q 020277 232 AGDLLVGADGIWS 244 (328)
Q Consensus 232 ~ad~VV~AdG~~S 244 (328)
.+|.||.|+|.+.
T Consensus 311 ~~d~lIlAtGa~~ 323 (515)
T TIGR03140 311 KAKSVIVATGARW 323 (515)
T ss_pred EeCEEEECCCCCc
Confidence 9999999999874
No 110
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=1.5e-07 Score=83.96 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=44.8
Q ss_pred EEEecHHHHHHHHHHhc---CCceEecCCeEEEEEE---eCCeEEEEEecCcEEecCEEEEccCCCc
Q 020277 184 TRVISRMTLQQILAKAV---GDEIILNESNVIDFKD---HGDKVSVVLENGQCYAGDLLVGADGIWS 244 (328)
Q Consensus 184 ~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~---~~~~v~v~~~~g~~i~ad~VV~AdG~~S 244 (328)
+-.+....-.++|.+.+ |+ .++.+.+|..+.. .+..+.|.+++|..+.|+.+|.+.|+|-
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~-i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGV-IFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCe-EEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 34566666566665553 43 4788888888763 3456889999999999999999999983
No 111
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.85 E-value=1.2e-07 Score=92.43 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.+|++||+.+++.|.+|+|+|+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 467999999999999999999999999999999865
No 112
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.82 E-value=1.5e-07 Score=93.19 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
||+|||+|+|||+||+.+++.|.+|+|+|+...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999999864
No 113
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.82 E-value=1.5e-07 Score=90.86 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+||+|||+|+|||+||+.+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999999975
No 114
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.82 E-value=6.1e-08 Score=92.28 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-EEEe---cCc--EEecCEEEEccCCCch
Q 020277 189 RMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLVGADGIWSK 245 (328)
Q Consensus 189 r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g~--~i~ad~VV~AdG~~S~ 245 (328)
-..+.+.|.+.+ + ..++++++++++..++++|+ +... +|+ ++.|+.||+|+|..+.
T Consensus 140 g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAG-VDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcC-eeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 455666666654 4 55889999999999888765 4444 454 6889999999999985
No 115
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.81 E-value=1.7e-07 Score=92.70 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-E---EEecC--cEEecCEEEEccCCCchh
Q 020277 190 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-V---VLENG--QCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 190 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~AdG~~S~v 246 (328)
..|.+.|.+.+ +...++.++.++++..+++.+. + ...+| ..+.|+.||+|+|..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45666666654 3345777999999988777654 2 22356 368999999999999865
No 116
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.9e-08 Score=87.55 Aligned_cols=114 Identities=26% Similarity=0.415 Sum_probs=71.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
+.+||+|||||||||+||.+++|.+++ ++|+|+... .|+ + .....+ ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~----gg~----~---------------~~~~~v--------en 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP----GGQ----L---------------TKTTDV--------EN 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc----CCc----c---------------ccceee--------cC
Confidence 468999999999999999999999998 767766642 121 0 000000 00
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEE
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (328)
+. |.+ ..+.-.+|.+.+.+.+ +...+. ..|.+++..++.+++.+.++. +
T Consensus 51 yp-----------------------g~~--~~~~g~~L~~~~~~~a~~~~~~~~~--~~v~~v~~~~~~F~v~t~~~~-~ 102 (305)
T COG0492 51 YP-----------------------GFP--GGILGPELMEQMKEQAEKFGVEIVE--DEVEKVELEGGPFKVKTDKGT-Y 102 (305)
T ss_pred CC-----------------------CCc--cCCchHHHHHHHHHHHhhcCeEEEE--EEEEEEeecCceEEEEECCCe-E
Confidence 00 011 1122344444444443 333333 677777766557788888887 9
Q ss_pred ecCEEEEccCCCchhhh
Q 020277 232 AGDLLVGADGIWSKVRK 248 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr~ 248 (328)
+|+.||.|+|....-.+
T Consensus 103 ~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 103 EAKAVIIATGAGARKLG 119 (305)
T ss_pred EEeEEEECcCCcccCCC
Confidence 99999999998765443
No 117
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.79 E-value=1.5e-07 Score=93.13 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=40.7
Q ss_pred HHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE----EEEecCc--EEecCEEEEccCCCchhh
Q 020277 191 TLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLVGADGIWSKVR 247 (328)
Q Consensus 191 ~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~i~ad~VV~AdG~~S~vr 247 (328)
.|.+.|.+.+ +...++.++.++++..+++.+. +...+|+ .+.|+.||+|+|..|.+.
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4666666543 2345778999999988777654 2234563 789999999999999764
No 118
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.78 E-value=1.1e-07 Score=92.83 Aligned_cols=153 Identities=16% Similarity=0.296 Sum_probs=84.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCC--ccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEG--QYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g--~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
+||+|||+|++|+.+|..+++.|.+|+|+|+........+ ..-+++. .....+-++.+| +....+....... +
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a-~g~l~rEidaLG-G~~~~~~d~~~i~---~ 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPA-KGILVKEIDALG-GLMGKAADKAGLQ---F 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccc-cchhhhhhhccc-chHHHHHHhhcee---h
Confidence 5899999999999999999999999999998743110000 0000110 001122333332 1112221111000 0
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEe-CCeE-EEEEecCcE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDH-GDKV-SVVLENGQC 230 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~ 230 (328)
. ......+. ....+ ...+++..+.+.|.+.+ +...++ ...|+++..+ ++.+ .|.+.+|..
T Consensus 76 r-~ln~skgp------------AV~~~-RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~ 140 (617)
T TIGR00136 76 R-VLNSSKGP------------AVRAT-RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLK 140 (617)
T ss_pred e-ecccCCCC------------ccccc-HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCE
Confidence 0 00000000 00011 13678887777776654 333344 5678888654 4444 477788889
Q ss_pred EecCEEEEccCCCchhhhhh
Q 020277 231 YAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 231 i~ad~VV~AdG~~S~vr~~~ 250 (328)
+.|+.||+|+|.++.-+-.+
T Consensus 141 I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 141 FRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred EECCEEEEccCcccCCCEEe
Confidence 99999999999997544433
No 119
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.77 E-value=2e-07 Score=89.11 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.++ .|.+|+|+||.+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 579999999999999999985 7999999999865
No 120
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.76 E-value=1.7e-08 Score=102.61 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+.++++|+|||+|||||++|+.|+++||+|+|||+.
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4467899999999999999999999999999999985
No 121
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.74 E-value=1.9e-08 Score=100.95 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=63.8
Q ss_pred ccC-ccccc-ccc----ccCCCCccchhHhHHhHHhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEcc
Q 020277 35 SRY-DHCIN-YKF----RTGTSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (328)
Q Consensus 35 ~~c-~~c~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~ 108 (328)
|-| .+|+. |.. ....++.++|++-..+..+.|..+-.+...++++|+|||+||+||+||-+|.+.||.|+||||
T Consensus 1737 rvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer 1816 (2142)
T KOG0399|consen 1737 RVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYER 1816 (2142)
T ss_pred ccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEe
Confidence 456 66766 432 234788999999999998888776555667899999999999999999999999999999999
Q ss_pred CCc
Q 020277 109 DMS 111 (328)
Q Consensus 109 ~~~ 111 (328)
+..
T Consensus 1817 ~dr 1819 (2142)
T KOG0399|consen 1817 SDR 1819 (2142)
T ss_pred cCC
Confidence 865
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.74 E-value=7.1e-08 Score=95.11 Aligned_cols=110 Identities=27% Similarity=0.369 Sum_probs=69.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.+||+|||||||||+||..|+++|++|+|+|+... .|+ +.... . + ..+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----GG~----~~~~~-----------~----i--------~~~- 51 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----GGQ----ITITS-----------E----V--------VNY- 51 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----Cce----EEecc-----------c----c--------ccC-
Confidence 48999999999999999999999999999998631 221 11000 0 0 000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHh---cCCceEecCCeEEEEEEeCCeEEEEEecCcEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (328)
.+. ..+...++.+.+.+. .+.. ++ .++|+++..+++.+.+.+.++ ++.+
T Consensus 52 ------pg~-------------------~~~~~~~l~~~l~~~~~~~gv~-~~-~~~V~~i~~~~~~~~V~~~~g-~~~a 103 (555)
T TIGR03143 52 ------PGI-------------------LNTTGPELMQEMRQQAQDFGVK-FL-QAEVLDVDFDGDIKTIKTARG-DYKT 103 (555)
T ss_pred ------CCC-------------------cCCCHHHHHHHHHHHHHHcCCE-Ee-ccEEEEEEecCCEEEEEecCC-EEEE
Confidence 000 011222333333332 3443 33 678888887666667776655 6899
Q ss_pred CEEEEccCCCchh
Q 020277 234 DLLVGADGIWSKV 246 (328)
Q Consensus 234 d~VV~AdG~~S~v 246 (328)
+.||+|+|.++..
T Consensus 104 ~~lVlATGa~p~~ 116 (555)
T TIGR03143 104 LAVLIATGASPRK 116 (555)
T ss_pred eEEEECCCCccCC
Confidence 9999999997643
No 123
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.73 E-value=2.4e-08 Score=102.87 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=56.5
Q ss_pred CCccCCCCCcccccCccccccccccCCCCccchhHhHHhHHh----cCCCCC--CCCCCCCCeEEEECCChHHHHHHHHH
Q 020277 23 PVPVYKHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAAVA----ESPTNN--SDSENKKLRILVAGGGIGGLVFALAA 96 (328)
Q Consensus 23 ~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~v~i~G~g~~g~~~a~~l 96 (328)
|.+...|+.+. ..|...|.|...+.++......+.... ...... ..++.++++|+|||||||||+||+.|
T Consensus 481 Plp~icGrVC~----h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 481 PLPAITGTICD----HQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred ChhhHhhCcCC----cchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 44445566443 356665666666677766544444311 111111 12234578999999999999999999
Q ss_pred HHCCCeEEEEccCCc
Q 020277 97 KRKGFEVLVFEKDMS 111 (328)
Q Consensus 97 ~~~g~~v~~~~~~~~ 111 (328)
+++|++|+|||+.+.
T Consensus 557 Ar~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 557 ARAGHPVTVFEKKEK 571 (1012)
T ss_pred HHCCCeEEEEecccc
Confidence 999999999998754
No 124
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.73 E-value=1.9e-07 Score=89.71 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchh
Q 020277 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
.|.+.|.+.++...|+++++|++|+.++++++|.+.+|+++.||.||.|.-.+...
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 34444545454425899999999999888898888899999999999998765433
No 125
>PRK09897 hypothetical protein; Provisional
Probab=98.72 E-value=7.3e-08 Score=93.79 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=34.0
Q ss_pred eEecCCeEEEEEEeCCeEEEEEec-CcEEecCEEEEccCCC
Q 020277 204 IILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLVGADGIW 243 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~-g~~i~ad~VV~AdG~~ 243 (328)
.++.+++|++++.+++++.+++.+ +..+.+|.||+|+|..
T Consensus 125 ~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 125 AVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 466788999999988899988865 4689999999999963
No 126
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=4.1e-07 Score=90.16 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC---CeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g---~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.+++.| .+|+|+|+...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 468999999999999999999998 89999999864
No 127
>PLN02529 lysine-specific histone demethylase 1
Probab=98.70 E-value=5.6e-09 Score=104.62 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCCCcccccCccccccccccCCCCccchhHhHHhHHhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEc
Q 020277 28 KHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFE 107 (328)
Q Consensus 28 ~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~ 107 (328)
....++|++||++ |.......+.+.|.+||.++. +.++....++|+|||||++||++|..|+++|++|+|+|
T Consensus 119 ~~~~~~i~~ci~~--c~~~l~~~~~inc~vnp~~~~------~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E 190 (738)
T PLN02529 119 ETVSSEYEHLISA--AYDFLLYNGYINFGVSPSFAS------PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE 190 (738)
T ss_pred hhchhhHHHHHHH--HHHHHHhCCCcceeecccccC------CCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEe
Confidence 3456789999883 355556778899999998764 11334567899999999999999999999999999999
Q ss_pred cCCc
Q 020277 108 KDMS 111 (328)
Q Consensus 108 ~~~~ 111 (328)
+...
T Consensus 191 ~~~~ 194 (738)
T PLN02529 191 GRNR 194 (738)
T ss_pred cCcc
Confidence 9753
No 128
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.69 E-value=3.3e-07 Score=86.70 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchhhhhh
Q 020277 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
.|.+.|.+.+... ++++.+|+.+..+..++.+++.+|.++.||.||.+.= ...+-+.+
T Consensus 216 ~l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p-~~~l~~ll 273 (444)
T COG1232 216 SLIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAP-LPELARLL 273 (444)
T ss_pred HHHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCC-HHHHHHHc
Confidence 3444455555555 8899999999999888888899999999999998744 34444444
No 129
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=6.4e-07 Score=89.61 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 357999999999999999999999999999998543
No 130
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.67 E-value=4.3e-07 Score=88.63 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.+++ |.+|+|+|+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 5699999999999999999976 999999999865
No 131
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=5.7e-07 Score=89.09 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.+++.| .+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 469999999999999999999874 89999999854
No 132
>PRK12831 putative oxidoreductase; Provisional
Probab=98.67 E-value=6.3e-08 Score=93.36 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=54.5
Q ss_pred ccCCCCCccc-ccCccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHH
Q 020277 25 PVYKHSCIDF-SRYDHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKR 98 (328)
Q Consensus 25 k~~~g~~~~i-~~c~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~ 98 (328)
+...|+.+.. . .|...|.+...+.++......+.. .... ....+.+.+.++|+||||||+||++|..|++
T Consensus 86 p~~~grvC~~~~---~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~-~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~ 161 (464)
T PRK12831 86 PAVCGRVCPQES---QCEGKCVLGIKGEPVAIGKLERFVADWARENGI-DLSETEEKKGKKVAVIGSGPAGLTCAGDLAK 161 (464)
T ss_pred hhhhhccCCCCC---ChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCC-CCCCCcCCCCCEEEEECcCHHHHHHHHHHHh
Confidence 3345554433 2 355545555556666655444433 1212 2222345678999999999999999999999
Q ss_pred CCCeEEEEccCCc
Q 020277 99 KGFEVLVFEKDMS 111 (328)
Q Consensus 99 ~g~~v~~~~~~~~ 111 (328)
+|++|+|||+...
T Consensus 162 ~G~~V~v~e~~~~ 174 (464)
T PRK12831 162 MGYDVTIFEALHE 174 (464)
T ss_pred CCCeEEEEecCCC
Confidence 9999999998653
No 133
>PRK07121 hypothetical protein; Validated
Probab=98.66 E-value=1.3e-06 Score=85.13 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.+||+||+.+++.|.+|+|+|+...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 367999999999999999999999999999999865
No 134
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=4.1e-07 Score=65.68 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=31.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
+|+|||||+.|+.+|..|++.|.+|+++++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999999753
No 135
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.66 E-value=7.5e-07 Score=88.71 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.+++. |.+|+|+|+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999998 999999999864
No 136
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=1e-06 Score=87.10 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 357999999999999999999999999999999854
No 137
>PRK10262 thioredoxin reductase; Provisional
Probab=98.64 E-value=5.5e-07 Score=82.71 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
...++|+||||||+||+||..|+++|++++++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 35789999999999999999999999999999964
No 138
>PLN02568 polyamine oxidase
Probab=98.64 E-value=8.1e-07 Score=87.01 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCC
Q 020277 190 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIW 243 (328)
Q Consensus 190 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~ 243 (328)
..|.+.|.+.+....|+++++|+.|+.++++++|++.+|++++||.||.+.-..
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~ 295 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLG 295 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHH
Confidence 457778888776556899999999999999999999999899999999987653
No 139
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=2.8e-07 Score=88.47 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.+||+||||||+|+.+|..|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 35899999999999999999999999999999975
No 140
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=1.5e-06 Score=86.34 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++.||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 356999999999999999999999999999999864
No 141
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.62 E-value=3.7e-07 Score=85.68 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.++|+|||||++|+.+|+.|+++|++|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999998754
No 142
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.62 E-value=6.7e-08 Score=96.96 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=58.6
Q ss_pred CCccCCCCCcccccCccccccccccCCCCcc-chhHhHHhHHhcC---CC-CCCCCCCCCCeEEEECCChHHHHHHHHHH
Q 020277 23 PVPVYKHSCIDFSRYDHCINYKFRTGTSGQS-KNPTQMKAAVAES---PT-NNSDSENKKLRILVAGGGIGGLVFALAAK 97 (328)
Q Consensus 23 ~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~-~~~~~~~~~~~v~i~G~g~~g~~~a~~l~ 97 (328)
|.+..-|+.+.. .|+..|.+.....++ .|.+++.++.... .. .+...+.+.++|+|||+||+||++|..|+
T Consensus 138 p~p~~~grvC~~----~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La 213 (652)
T PRK12814 138 PLPGILGRICPA----PCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLL 213 (652)
T ss_pred CccceeeCCcCc----hhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 445555665444 566656565555665 5677776663211 11 11223456789999999999999999999
Q ss_pred HCCCeEEEEccCCc
Q 020277 98 RKGFEVLVFEKDMS 111 (328)
Q Consensus 98 ~~g~~v~~~~~~~~ 111 (328)
+.|++|+|||+.+.
T Consensus 214 ~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 214 RKGHDVTIFDANEQ 227 (652)
T ss_pred HCCCcEEEEecCCC
Confidence 99999999998754
No 143
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.61 E-value=9.2e-07 Score=85.64 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
..+||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4689999999999999999999999999999986
No 144
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.61 E-value=8.5e-08 Score=92.57 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCccCCCCCccc-ccCccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHH
Q 020277 23 PVPVYKHSCIDF-SRYDHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAA 96 (328)
Q Consensus 23 ~~k~~~g~~~~i-~~c~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l 96 (328)
|.+...|+.+.. ++ |...|.+...+.++......+.. ...+.+.....+.++++|+|||+||+||++|..|
T Consensus 84 p~~~~~grvC~~~~~---Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l 160 (467)
T TIGR01318 84 TLPEICGRVCPQDRL---CEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADIL 160 (467)
T ss_pred CchHhhcccCCCCCC---hHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHH
Confidence 334455654442 34 44434455455566554333322 2222222222344678999999999999999999
Q ss_pred HHCCCeEEEEccCCc
Q 020277 97 KRKGFEVLVFEKDMS 111 (328)
Q Consensus 97 ~~~g~~v~~~~~~~~ 111 (328)
+++|++|+|+|+.+.
T Consensus 161 ~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 161 ARAGVQVVVFDRHPE 175 (467)
T ss_pred HHcCCeEEEEecCCC
Confidence 999999999999864
No 145
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.61 E-value=9e-08 Score=96.22 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=52.8
Q ss_pred ccCCCCCccc-ccCccccccccccCCCCccchh-----HhHHhHHhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHH
Q 020277 25 PVYKHSCIDF-SRYDHCINYKFRTGTSGQSKNP-----TQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKR 98 (328)
Q Consensus 25 k~~~g~~~~i-~~c~~c~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~ 98 (328)
+...||.+.. .+ |+..|.+...+.++... +...+....+.+.....+.++++|+|||+||+||++|..|++
T Consensus 272 p~~~grvCp~~~~---Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~ 348 (654)
T PRK12769 272 PEITGRVCPQDRL---CEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLAR 348 (654)
T ss_pred hhHhcccCCCCCC---hHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHH
Confidence 3445654443 34 44434444444555444 333333322222211223468899999999999999999999
Q ss_pred CCCeEEEEccCCc
Q 020277 99 KGFEVLVFEKDMS 111 (328)
Q Consensus 99 ~g~~v~~~~~~~~ 111 (328)
.|++|+|||+.+.
T Consensus 349 ~G~~V~V~E~~~~ 361 (654)
T PRK12769 349 NGVAVTVYDRHPE 361 (654)
T ss_pred CCCeEEEEecCCC
Confidence 9999999998754
No 146
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=2e-06 Score=85.33 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 357999999999999999999999999999999854
No 147
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.59 E-value=2.5e-06 Score=85.08 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 357999999999999999999999999999999865
No 148
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.58 E-value=3.9e-07 Score=87.79 Aligned_cols=190 Identities=19% Similarity=0.241 Sum_probs=104.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccccee--echh--HHHHHHhcCchHHHHHHH-hc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ--IQSN--ALAALEAIDLDVAEEVMR-AG 148 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~--l~~~--~~~~l~~l~~g~~~~l~~-~~ 148 (328)
-+...+|+|||||..|..+|++|+++|.++.+++......+++++..+++. +.|+ .++.+..-..-+..++.+ .+
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtg 115 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETG 115 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcC
Confidence 345679999999999999999999999985554444343344444333321 2232 233332211123333333 22
Q ss_pred ccccccccc---------------------cccCCCCceEEe------ecCCchhh---hcCCCeEEEecHHHHHHHHHH
Q 020277 149 CVTGDRING---------------------LVDGISGSWYIK------FDTFTPAA---EKGLPVTRVISRMTLQQILAK 198 (328)
Q Consensus 149 ~~~~~~~~~---------------------~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~ 198 (328)
...+....+ .+.+.....+.. ++...... ..-.|....+++..+.+.|+.
T Consensus 116 l~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~ 195 (856)
T KOG2844|consen 116 LHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALAR 195 (856)
T ss_pred CCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHH
Confidence 221111000 000000000000 00000000 001133346788888888876
Q ss_pred hc---CCceEecCCeEEEEEEeCCe-EEEEEecCcEEecCEEEEccCCCchhhhhhcCCCCceEeeeEEEE
Q 020277 199 AV---GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYT 265 (328)
Q Consensus 199 ~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~ 265 (328)
.+ |+. +..++.|++|....++ +-|.+.-| .|++..||.|+|.|...-..+.+...|.++-+.+|.
T Consensus 196 ~A~~~GA~-viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~Yv 264 (856)
T KOG2844|consen 196 AASALGAL-VIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYV 264 (856)
T ss_pred HHHhcCcE-EEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeeeeeEE
Confidence 64 555 6679999999865544 45666666 699999999999998776677666666665554443
No 149
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.58 E-value=1.5e-07 Score=91.01 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=51.6
Q ss_pred cC-ccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 36 RY-DHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 36 ~c-~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.| ..|...|.+...+.++......+.. ...+.....+.+..+++|+|||+||+||++|..|+++|++|+|||+.
T Consensus 96 vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 96 VCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred cCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 44 3466656666666676655433333 11110111233456789999999999999999999999999999997
Q ss_pred Cc
Q 020277 110 MS 111 (328)
Q Consensus 110 ~~ 111 (328)
+.
T Consensus 176 ~~ 177 (471)
T PRK12810 176 DR 177 (471)
T ss_pred CC
Confidence 54
No 150
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.57 E-value=1.3e-07 Score=91.16 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=48.8
Q ss_pred ccccccccCCCC--ccchhHhHHhHHhcCC--CCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 40 CINYKFRTGTSG--QSKNPTQMKAAVAESP--TNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 40 c~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
|++.|.+..... ++.|..+..+..+... ..+..++..+++|+||||||+||++|..|+++|++|+|+|+.+.
T Consensus 99 C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 99 CEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred HHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 666344333233 4566665444422111 11123456778999999999999999999999999999999854
No 151
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.56 E-value=1.4e-07 Score=98.55 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=52.6
Q ss_pred cCCCCCccc-ccCccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHC
Q 020277 26 VYKHSCIDF-SRYDHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRK 99 (328)
Q Consensus 26 ~~~g~~~~i-~~c~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~ 99 (328)
...|+.+.. .+ |...|.+...+.++......+.. ...... ...+.++++|+|||||||||++|..|+++
T Consensus 378 ~~~grvCp~~~~---Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~--~~~~~~~~kVaIIG~GPAGLsaA~~La~~ 452 (1006)
T PRK12775 378 SICGRVCPQETQ---CEAQCIIAKKHESVGIGRLERFVGDNARAKPVKP--PRFSKKLGKVAICGSGPAGLAAAADLVKY 452 (1006)
T ss_pred HHhcCcCCCCCC---HHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCC--CCCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 444554433 23 55445555555666555444432 222211 12234678999999999999999999999
Q ss_pred CCeEEEEccCCc
Q 020277 100 GFEVLVFEKDMS 111 (328)
Q Consensus 100 g~~v~~~~~~~~ 111 (328)
|++|+|||+...
T Consensus 453 G~~VtV~E~~~~ 464 (1006)
T PRK12775 453 GVDVTVYEALHV 464 (1006)
T ss_pred CCcEEEEecCCC
Confidence 999999998754
No 152
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.55 E-value=2.2e-06 Score=85.57 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999999864
No 153
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=4.2e-06 Score=83.18 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=33.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 457999999999999999999999999999999753
No 154
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=3e-06 Score=84.69 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 357999999999999999999999999999999854
No 155
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2.1e-06 Score=84.62 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+ +.|.+|+|+|+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 346999999999999999999 89999999999754
No 156
>PRK14694 putative mercuric reductase; Provisional
Probab=98.54 E-value=2.2e-06 Score=82.93 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+.+||+||||||+|+++|..|++.|.+|+|+|+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3467899999999999999999999999999999863
No 157
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.53 E-value=2.4e-06 Score=82.55 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+||+||||||+|+.+|..|+++|++|+|+|+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 45899999999999999999999999999999864
No 158
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.53 E-value=2.1e-07 Score=93.29 Aligned_cols=85 Identities=19% Similarity=0.143 Sum_probs=54.2
Q ss_pred CccCCCCCccc-ccCccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHH
Q 020277 24 VPVYKHSCIDF-SRYDHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAK 97 (328)
Q Consensus 24 ~k~~~g~~~~i-~~c~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~ 97 (328)
.+...||.+.. ++ |+..|.+...+.++......+.. ...+.......+.++++|+|||+||+||++|..|+
T Consensus 254 ~p~~~grvCp~~~~---Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~ 330 (639)
T PRK12809 254 LPEICGRVCPQDRL---CEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILA 330 (639)
T ss_pred cchhhcccCCCCCC---hHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHH
Confidence 33345554442 34 44434444445555554443332 23232222223346899999999999999999999
Q ss_pred HCCCeEEEEccCCc
Q 020277 98 RKGFEVLVFEKDMS 111 (328)
Q Consensus 98 ~~g~~v~~~~~~~~ 111 (328)
+.|++|+|||+.+.
T Consensus 331 ~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 331 RAGVQVDVFDRHPE 344 (639)
T ss_pred HcCCcEEEEeCCCC
Confidence 99999999999864
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.53 E-value=2e-06 Score=83.07 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45899999999999999999999999999999864
No 160
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.51 E-value=1e-06 Score=82.00 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=34.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+..+|+|||+|.+||.+|+.|.+.||+|+|+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 5778999999999999999999999999999999865
No 161
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.51 E-value=3.4e-07 Score=88.40 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccC
Q 020277 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADG 241 (328)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG 241 (328)
.|.+.|.+.+....++++++|++|+.+++++.|++.+|+++.||.||.|.-
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 344555555543358999999999999899999888888899999999984
No 162
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.51 E-value=3.3e-07 Score=88.16 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCccCCCCCccc-ccCccccccccccC----CCCccchhHhHHhHH-----hcCCCCCCCCCCCCCeEEEECCChHHHHH
Q 020277 23 PVPVYKHSCIDF-SRYDHCINYKFRTG----TSGQSKNPTQMKAAV-----AESPTNNSDSENKKLRILVAGGGIGGLVF 92 (328)
Q Consensus 23 ~~k~~~g~~~~i-~~c~~c~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~i~G~g~~g~~~ 92 (328)
|.+...|+.+.. ++ |...|.+.. .+.++......+... ......+.+.+.++++|+|||+||+||++
T Consensus 72 p~p~~~grvC~~~~~---Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~a 148 (449)
T TIGR01316 72 LLPAICGRVCPQERQ---CEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLAC 148 (449)
T ss_pred ChhHHhccCCCCccc---hHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHH
Confidence 444455654443 24 444343332 566776654444331 11111222344567999999999999999
Q ss_pred HHHHHHCCCeEEEEccCCc
Q 020277 93 ALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 93 a~~l~~~g~~v~~~~~~~~ 111 (328)
|..|+++|++|+|||+.+.
T Consensus 149 A~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 149 ASELAKAGHSVTVFEALHK 167 (449)
T ss_pred HHHHHHCCCcEEEEecCCC
Confidence 9999999999999999753
No 163
>PLN02507 glutathione reductase
Probab=98.51 E-value=3.6e-06 Score=82.03 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
...+||+|||+||+|+.+|..+++.|.+|.|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45689999999999999999999999999999973
No 164
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.51 E-value=2.7e-06 Score=84.38 Aligned_cols=36 Identities=39% Similarity=0.668 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|++||++|+.++++|.+|+|+|+...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 357999999999999999999999999999999864
No 165
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=4e-06 Score=83.43 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 357999999999999999999999999999999754
No 166
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=1.7e-06 Score=83.73 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+||+||||||+|+.+|..|++.|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35899999999999999999999999999999864
No 167
>PRK06116 glutathione reductase; Validated
Probab=98.50 E-value=2e-06 Score=82.86 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999986
No 168
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.49 E-value=1.1e-06 Score=83.10 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~--~v~~~~~~~~ 111 (328)
+.++|+|||||+||+.+|..|+++|+ +|+|+++.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 35689999999999999999999987 7999998754
No 169
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.49 E-value=4.7e-07 Score=79.18 Aligned_cols=167 Identities=17% Similarity=0.241 Sum_probs=95.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCC------CeEEEEccCCccccCCCcccccee--echhHHHHHHhcCchHHHHHHH
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKG------FEVLVFEKDMSAIRGEGQYRGPIQ--IQSNALAALEAIDLDVAEEVMR 146 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g------~~v~~~~~~~~~~~~~g~~~~~~~--l~~~~~~~l~~l~~g~~~~l~~ 146 (328)
.+.++|+|||||+.|..+|++|++++ +.++|||....+...+|-.++-+. -+|.-..-|..+...+.+++.+
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHH
Confidence 45689999999999999999999987 899999998765544554443332 2222234444454556666654
Q ss_pred hcccccccccccccCCCCceEEeec--------------CCc-----hhhhcC-CCeEEEecHHHHHHHHHHhc---CCc
Q 020277 147 AGCVTGDRINGLVDGISGSWYIKFD--------------TFT-----PAAEKG-LPVTRVISRMTLQQILAKAV---GDE 203 (328)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-----~~~~~~-~~~~~~i~r~~l~~~L~~~~---~~~ 203 (328)
..... .-+++. .-..|....+ .-. .-...| .....++++..+.+.+++.+ +.+
T Consensus 88 eydGv--nnwgYR--altTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V 163 (380)
T KOG2852|consen 88 EYDGV--NNWGYR--ALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGV 163 (380)
T ss_pred hhcCc--ccccce--eeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCe
Confidence 32111 111111 0111111111 000 000111 11246899999999988775 333
Q ss_pred eEecCCeEEEEEEeCCeEE-EEEe---c-CcEEecCEEEEccCCCchh
Q 020277 204 IILNESNVIDFKDHGDKVS-VVLE---N-GQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~-v~~~---~-g~~i~ad~VV~AdG~~S~v 246 (328)
.+.+ -+|.++..+..++. +..+ + ....+.+.+|++.|.|+.-
T Consensus 164 ~lv~-Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 164 KLVF-GKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred EEEE-eeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence 3444 46777763333332 2222 1 3467899999999999853
No 170
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.48 E-value=1.7e-08 Score=94.26 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=49.4
Q ss_pred cCCCCCccccccCCCCCCccCCCCCcccccCccccccccccCCCCccchhHhHHhHH
Q 020277 7 YNSVNLSTTVFSRTHFPVPVYKHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAAV 63 (328)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 63 (328)
.+-+.+...+++||+||+|+++|+.++|++|++||+|..+...+.++.|.+||..+.
T Consensus 313 ~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~~~~~~~~~~~C~vNp~~g~ 369 (370)
T cd02929 313 LDLIGAARPSIADPFLPKKIREGRIDDIRECIGCNICISGDEGGVPMRCTQNPTAGE 369 (370)
T ss_pred CCeeeechHhhhCchHHHHHHcCCccccccCCchhhhhccccCCCCceeccCccccC
Confidence 344667789999999999999999999999999999777766677899999998764
No 171
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.47 E-value=2.6e-07 Score=78.57 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=30.8
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
||+||||||+|+.+|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999988753
No 172
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.47 E-value=1.1e-06 Score=84.61 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+||+||||||+|++||..++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 479999999999999999999999999999985
No 173
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=6.1e-06 Score=81.43 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
...||+|||+|.+||+||+.+++.|.+|+|+|+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999987
No 174
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.47 E-value=1.8e-06 Score=82.78 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 35899999999999999999999999999999975
No 175
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=1.8e-05 Score=78.65 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
....||+|||+|++|+++|+.++++|.+|+|+|+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3468999999999999999999999999999999753
No 176
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.46 E-value=2e-06 Score=84.47 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++. .+|+|+|+...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 457999999999999999999986 89999999864
No 177
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.46 E-value=2.4e-07 Score=64.69 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=27.8
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 82 VAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 82 i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999975
No 178
>PLN02815 L-aspartate oxidase
Probab=98.46 E-value=3.4e-06 Score=83.61 Aligned_cols=35 Identities=40% Similarity=0.625 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.| +|+|+|+...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 3579999999999999999999999 9999999865
No 179
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.46 E-value=2.8e-06 Score=79.86 Aligned_cols=101 Identities=24% Similarity=0.392 Sum_probs=73.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+|||+|+.|+.+|..|+++|.+|+++++.+..... .++..+
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-------------------~~~~~~--------------- 185 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-------------------LMPPEV--------------- 185 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-------------------hCCHHH---------------
Confidence 3578999999999999999999999999999987531100 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|.+ .+. .++++++|++++.+++.+.+++.+|+++.+|.
T Consensus 186 ---------------------------------~~~l~~~l~~-~gV-~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~ 230 (377)
T PRK04965 186 ---------------------------------SSRLQHRLTE-MGV-HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDA 230 (377)
T ss_pred ---------------------------------HHHHHHHHHh-CCC-EEEECCeEEEEEccCCEEEEEEcCCcEEECCE
Confidence 1122333322 243 36778999999887777888889999999999
Q ss_pred EEEccCCCch
Q 020277 236 LVGADGIWSK 245 (328)
Q Consensus 236 VV~AdG~~S~ 245 (328)
||.|+|..+.
T Consensus 231 vI~a~G~~p~ 240 (377)
T PRK04965 231 VIAAAGLRPN 240 (377)
T ss_pred EEECcCCCcc
Confidence 9999998663
No 180
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.46 E-value=3.8e-06 Score=83.57 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.8
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 80 v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
|+|||+|+|||+||+.+++.|.+|+|+|+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999999986
No 181
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.44 E-value=3.9e-07 Score=93.07 Aligned_cols=37 Identities=35% Similarity=0.574 Sum_probs=34.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.++++|+|||||||||++|..|+++|++|+|||+..
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4578899999999999999999999999999999864
No 182
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=8.5e-06 Score=80.94 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..||+|||+|.|||+||+.+++. .+|+|+|+...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 56999999999999999999986 89999999854
No 183
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.43 E-value=1.7e-06 Score=79.26 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=92.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHH------CCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHH
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKR------KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMR 146 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~------~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~ 146 (328)
......||+|||||||||++|+.|.+ +.++|.|+|+..... |..-.+-.+.|.++.-|- .-|.+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---ghtlSGaviep~aldEL~----P~wke--- 141 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---GHTLSGAVIEPGALDELL----PDWKE--- 141 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---CceecceeeccchhhhhC----cchhh---
Confidence 34456899999999999999999876 357899999986531 111112345564433321 11111
Q ss_pred hccccccccc-ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCe-E
Q 020277 147 AGCVTGDRIN-GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-V 221 (328)
Q Consensus 147 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v 221 (328)
.+........ .-..-.++.+.+..+...+...+| .+.++-.++.++|-+.+ |.+ |.-+..+.++..++++ |
T Consensus 142 ~~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvE-iyPg~aaSevly~edgsV 217 (621)
T KOG2415|consen 142 DGAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHG---NYVVSLGQLVRWLGEKAEELGVE-IYPGFAASEVLYDEDGSV 217 (621)
T ss_pred cCCcccccccccceeeeccCceeecCCCcccccCC---cEEEEHHHHHHHHHHHHHhhCce-eccccchhheeEcCCCcE
Confidence 1111100000 000012334444444333333334 36888899999997654 443 4444445554443322 2
Q ss_pred E----------------EEEecCcEEecCEEEEccCCCchhhhhhc
Q 020277 222 S----------------VVLENGQCYAGDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 222 ~----------------v~~~~g~~i~ad~VV~AdG~~S~vr~~~~ 251 (328)
. -+|+.|-++.|+.-|.|.|.+-.+-+++.
T Consensus 218 kGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 218 KGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred eeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 2 22334457999999999999977766663
No 184
>PRK06370 mercuric reductase; Validated
Probab=98.43 E-value=1.1e-06 Score=84.94 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+||+|||+||+|+++|..|+++|++|+|+|+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45899999999999999999999999999999863
No 185
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=1.7e-06 Score=83.60 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+||+||||||+|++||..|+++|++|+|+|+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 589999999999999999999999999999986
No 186
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.42 E-value=5.4e-06 Score=83.25 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 357999999999999999999999999999999765
No 187
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.42 E-value=2.4e-06 Score=82.18 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 35899999999999999999999999999999863
No 188
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=1.1e-06 Score=84.87 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
+.+||+|||+||+|++||..++++|++|+|+|+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999974
No 189
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.41 E-value=6.9e-06 Score=80.93 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=31.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
....||+|||+|.|||+||+.++ .|.+|+|+|+.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 34679999999999999999996 4999999999864
No 190
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.41 E-value=6.5e-06 Score=80.49 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=30.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.++ |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3579999999999999999997 679999999865
No 191
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.41 E-value=2.8e-06 Score=81.11 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=32.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.++++|+|||||.+|+.+|..|.+.+++|||+|+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4567999999999999999999877899999998764
No 192
>PRK08275 putative oxidoreductase; Provisional
Probab=98.40 E-value=9.1e-06 Score=80.26 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++. |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 347999999999999999999987 789999999865
No 193
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.39 E-value=5.7e-06 Score=79.87 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~--------------- 218 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------FLDDEI--------------- 218 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------cCCHHH---------------
Confidence 358999999999999999999999999999998753210 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|.+ .+ ..++.+++|++++.+++++.+++.+|+++++|.
T Consensus 219 ---------------------------------~~~l~~~l~~-~g-I~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~ 263 (461)
T PRK05249 219 ---------------------------------SDALSYHLRD-SG-VTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADC 263 (461)
T ss_pred ---------------------------------HHHHHHHHHH-cC-CEEEECCEEEEEEEeCCeEEEEECCCCEEEeCE
Confidence 1122333322 23 337778999999877778888888888999999
Q ss_pred EEEccCCCchhh
Q 020277 236 LVGADGIWSKVR 247 (328)
Q Consensus 236 VV~AdG~~S~vr 247 (328)
||.|.|..+...
T Consensus 264 vi~a~G~~p~~~ 275 (461)
T PRK05249 264 LLYANGRTGNTD 275 (461)
T ss_pred EEEeecCCcccc
Confidence 999999887653
No 194
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.39 E-value=5.7e-06 Score=79.01 Aligned_cols=103 Identities=28% Similarity=0.360 Sum_probs=77.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~ 154 (328)
.-+++++|||||+.|+..|..+++.|.+|||+|+.+...+. .+..+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------------------~D~ei-------------- 216 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------------------EDPEI-------------- 216 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc--------------------CCHHH--------------
Confidence 45789999999999999999999999999999999753211 00011
Q ss_pred ccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCc--EEe
Q 020277 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ--CYA 232 (328)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~--~i~ 232 (328)
...+.+.|.+ +...++.+++++.++..++++.+++++|+ +++
T Consensus 217 ----------------------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ 260 (454)
T COG1249 217 ----------------------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIE 260 (454)
T ss_pred ----------------------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEE
Confidence 1122333333 33458889999999988777888888876 799
Q ss_pred cCEEEEccCCCchhh
Q 020277 233 GDLLVGADGIWSKVR 247 (328)
Q Consensus 233 ad~VV~AdG~~S~vr 247 (328)
+|.|+.|.|....+-
T Consensus 261 ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 261 ADAVLVAIGRKPNTD 275 (454)
T ss_pred eeEEEEccCCccCCC
Confidence 999999999876544
No 195
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.39 E-value=9.2e-06 Score=80.25 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|++|+++|+.+++.|.+|+|+|+...
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 367999999999999999999999999999999864
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=4.6e-06 Score=80.86 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEcc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~ 108 (328)
..+||+|||+||+|+++|..+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999998
No 197
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.39 E-value=2.3e-06 Score=82.02 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~ 111 (328)
++|+|||||++|+.+|..|+++ +++|+|+|+.+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 4899999999999999999886 689999999864
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=7.9e-06 Score=78.90 Aligned_cols=32 Identities=41% Similarity=0.710 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
+||+||||||+|+.+|..|+++|++|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999999999999999999999999999983
No 199
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.38 E-value=7.1e-07 Score=85.16 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCCccchhHhHHhHHhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 49 TSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.++.++..+.+.+..+.+.+...+...+.++|+|||+||+||++|..|++.||.||++|+.+.
T Consensus 95 ~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 95 NIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred hhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 344444555555555544444344456679999999999999999999999999999999865
No 200
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.38 E-value=4e-06 Score=83.12 Aligned_cols=36 Identities=39% Similarity=0.696 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.+||++|+.+++.|.+|+|+|+...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 357999999999999999999999999999999864
No 201
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.38 E-value=1e-06 Score=87.22 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=54.2
Q ss_pred CCccCCCCCcccccCccccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHH
Q 020277 23 PVPVYKHSCIDFSRYDHCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAK 97 (328)
Q Consensus 23 ~~k~~~g~~~~i~~c~~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~ 97 (328)
|.+...|+.+.. .|+..|.+.....++......++. ..... .+......+++|+|||+||+||++|..|+
T Consensus 83 p~~~~~grvc~~----~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~-~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 83 PFPAVMGRVCYH----PCESGCNRGQVDDAVGINAVERFLGDYAIANGWK-FPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred CcchHhhCcCCc----hhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCC-CCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 333344544433 555545565555565554444432 11111 11123456889999999999999999999
Q ss_pred HCCCeEEEEccCCc
Q 020277 98 RKGFEVLVFEKDMS 111 (328)
Q Consensus 98 ~~g~~v~~~~~~~~ 111 (328)
++|++|+|+|+.+.
T Consensus 158 ~~G~~V~v~e~~~~ 171 (564)
T PRK12771 158 RMGHAVTIFEAGPK 171 (564)
T ss_pred HCCCeEEEEecCCC
Confidence 99999999998754
No 202
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.37 E-value=1.2e-05 Score=76.99 Aligned_cols=30 Identities=43% Similarity=0.718 Sum_probs=28.5
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 82 VAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 82 i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
|||+|.+|++||+.+++.|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999864
No 203
>PRK12839 hypothetical protein; Provisional
Probab=98.36 E-value=4.2e-05 Score=75.70 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
....||+|||+|.+|+++|+.+++.|.+|+|+|+...
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3468999999999999999999999999999999754
No 204
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=5.9e-06 Score=78.18 Aligned_cols=100 Identities=24% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+|||+|+.|+.+|..|++.|.+|+|+|+.+...... ..+ ..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~--------~~~-----------~~--------------- 188 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN--------APP-----------PV--------------- 188 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh--------cCH-----------HH---------------
Confidence 35789999999999999999999999999999875321000 000 00
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.+.+ .+. .++++++|++++. ++.+.+++.+|+++.+|+
T Consensus 189 ---------------------------------~~~l~~~l~~-~GV-~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~ 232 (396)
T PRK09754 189 ---------------------------------QRYLLQRHQQ-AGV-RILLNNAIEHVVD-GEKVELTLQSGETLQADV 232 (396)
T ss_pred ---------------------------------HHHHHHHHHH-CCC-EEEeCCeeEEEEc-CCEEEEEECCCCEEECCE
Confidence 0111222222 233 3777899999876 556778888999999999
Q ss_pred EEEccCCCch
Q 020277 236 LVGADGIWSK 245 (328)
Q Consensus 236 VV~AdG~~S~ 245 (328)
||.|.|....
T Consensus 233 Vv~a~G~~pn 242 (396)
T PRK09754 233 VIYGIGISAN 242 (396)
T ss_pred EEECCCCChh
Confidence 9999998764
No 205
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.36 E-value=6.7e-06 Score=79.53 Aligned_cols=33 Identities=45% Similarity=0.673 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
++|+|||+||+|+.+|..++++|++|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 589999999999999999999999999999874
No 206
>PRK07846 mycothione reductase; Reviewed
Probab=98.35 E-value=7.6e-06 Score=78.79 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=72.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+..... ++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~--------------------~d~~~---------------- 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH--------------------LDDDI---------------- 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc--------------------cCHHH----------------
Confidence 579999999999999999999999999999987532100 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
+..+.+.+ + .+ ..++.+++|++++.+++++.+.+.+|+++++|.|
T Consensus 210 --------------------------------~~~l~~l~-~-~~-v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~v 254 (451)
T PRK07846 210 --------------------------------SERFTELA-S-KR-WDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVL 254 (451)
T ss_pred --------------------------------HHHHHHHH-h-cC-eEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEE
Confidence 01112211 1 12 3477789999998777778888888889999999
Q ss_pred EEccCCCchh
Q 020277 237 VGADGIWSKV 246 (328)
Q Consensus 237 V~AdG~~S~v 246 (328)
|.|.|.....
T Consensus 255 l~a~G~~pn~ 264 (451)
T PRK07846 255 LVATGRVPNG 264 (451)
T ss_pred EEEECCccCc
Confidence 9999987654
No 207
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.34 E-value=5.3e-06 Score=78.35 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=31.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|+|||||++|+.+|+.|+++|++|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998754
No 208
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.34 E-value=8.4e-06 Score=80.50 Aligned_cols=36 Identities=39% Similarity=0.604 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.+|+++|+.+++.|.+|+|+|+...
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 357999999999999999999999999999999854
No 209
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=2.1e-06 Score=82.50 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
++|+|||||++|+++|..|++.+ .+|+|+|+.+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 37999999999999999999875 58999999864
No 210
>PTZ00058 glutathione reductase; Provisional
Probab=98.32 E-value=6e-06 Score=81.25 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
...++||+||||||+|+.+|..+++.|.+|.|+|+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 345789999999999999999999999999999986
No 211
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.32 E-value=6.4e-06 Score=77.48 Aligned_cols=162 Identities=18% Similarity=0.191 Sum_probs=85.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccccee--echh------HHHHHH---------------h
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ--IQSN------ALAALE---------------A 135 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~--l~~~------~~~~l~---------------~ 135 (328)
+|+|||+|.|||++|+.|++. ++|+|+-|.+.....+-+.-||+. +.+. ....|. .
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999998764322222223332 2221 111111 1
Q ss_pred cCchHHHHHHHhcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEE
Q 020277 136 IDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVI 212 (328)
Q Consensus 136 l~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~ 212 (328)
-+....+.|...+.... ....+.+....+......+.-.- ..-.=..+.+.|.+++ ++..++.++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FD-------r~~~g~~~lt~EggHS~rRIlH~--~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~ 158 (518)
T COG0029 88 EAPEAIEWLIDLGVPFD-------RDEDGRLHLTREGGHSRRRILHA--ADATGKEIMTALLKKVRNRPNITVLEGAEAL 158 (518)
T ss_pred hHHHHHHHHHHcCCCCc-------CCCCCceeeeeecccCCceEEEe--cCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence 11122222222222111 11112222222211111100000 0011245666666665 345577788899
Q ss_pred EEEEeCC-eE-EEEE--ecC--cEEecCEEEEccCCCchhhhhh
Q 020277 213 DFKDHGD-KV-SVVL--ENG--QCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 213 ~i~~~~~-~v-~v~~--~~g--~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
++..+++ .+ -+.+ .++ .++.++.||+|+|.-+.+-..-
T Consensus 159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~T 202 (518)
T COG0029 159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYT 202 (518)
T ss_pred hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccccc
Confidence 9888777 44 2222 223 5789999999999988765543
No 212
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=1.1e-05 Score=77.98 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=72.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|++|+.+|..|++.|.+|+++++.+..... ++..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~~~~---------------- 215 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG--------------------EDKEI---------------- 215 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc--------------------CCHHH----------------
Confidence 579999999999999999999999999999987542100 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC---cEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~i~a 233 (328)
...+.+.|.+ .+ ..++.+++|++++.+++++.+.+.++ +++.+
T Consensus 216 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~ 261 (462)
T PRK06416 216 --------------------------------SKLAERALKK-RG-IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEA 261 (462)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEe
Confidence 0112233322 23 34778999999988777888877766 67999
Q ss_pred CEEEEccCCCchh
Q 020277 234 DLLVGADGIWSKV 246 (328)
Q Consensus 234 d~VV~AdG~~S~v 246 (328)
|.||.|.|.....
T Consensus 262 D~vi~a~G~~p~~ 274 (462)
T PRK06416 262 DYVLVAVGRRPNT 274 (462)
T ss_pred CEEEEeeCCccCC
Confidence 9999999987654
No 213
>PRK13748 putative mercuric reductase; Provisional
Probab=98.31 E-value=2.2e-06 Score=84.85 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
..+||+||||||+|+++|..|++.|.+|.|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4689999999999999999999999999999987
No 214
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.31 E-value=1.3e-05 Score=78.45 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+| +||++|+.+++.|.+|+|+|+.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 35799999999 999999999999999999999864
No 215
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.31 E-value=2.9e-05 Score=77.06 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+|+|||+|++|+++|+.++++|++|+|+|+...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~ 50 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57999999999999999999999999999999754
No 216
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.30 E-value=2e-05 Score=78.27 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHH----HCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAK----RKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~----~~g~~v~~~~~~~~ 111 (328)
||+|||+|.|||+||+.++ ..|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999999864
No 217
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.30 E-value=1.3e-06 Score=84.67 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=47.9
Q ss_pred cccccccccCCCCccchhHhHHhH-----HhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 39 HCINYKFRTGTSGQSKNPTQMKAA-----VAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 39 ~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.|...|.+.....++......++. ...+.....+.+...++|+|||+|++|+++|..|+++|++|+|+|+.+.
T Consensus 100 ~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 100 PCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred hhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 565545554445555544333333 1122111112234568999999999999999999999999999998764
No 218
>PRK06116 glutathione reductase; Validated
Probab=98.29 E-value=1.3e-05 Score=77.10 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+..... ++..+
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------~~~~~--------------- 210 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG--------------------FDPDI--------------- 210 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc--------------------cCHHH---------------
Confidence 3579999999999999999999999999999987532100 00000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCe-EEEEEecCcEEecC
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGD 234 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~ad 234 (328)
...+.+.|.+ .+ ..++++++|.+++.++++ +.+.+.+|+++.+|
T Consensus 211 ---------------------------------~~~l~~~L~~-~G-V~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D 255 (450)
T PRK06116 211 ---------------------------------RETLVEEMEK-KG-IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVD 255 (450)
T ss_pred ---------------------------------HHHHHHHHHH-CC-cEEECCCEEEEEEEcCCceEEEEEcCCcEEEeC
Confidence 0112222222 23 347789999999876554 77888888899999
Q ss_pred EEEEccCCCchhh
Q 020277 235 LLVGADGIWSKVR 247 (328)
Q Consensus 235 ~VV~AdG~~S~vr 247 (328)
.||.|.|......
T Consensus 256 ~Vv~a~G~~p~~~ 268 (450)
T PRK06116 256 CLIWAIGREPNTD 268 (450)
T ss_pred EEEEeeCCCcCCC
Confidence 9999999876554
No 219
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.28 E-value=1.6e-05 Score=76.80 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||||++|+.+|..|++.|.+|+++|+.+..... ++..+
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~~~~--------------- 213 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG--------------------EDAEV--------------- 213 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC--------------------CCHHH---------------
Confidence 3579999999999999999999999999999987531100 00000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC--cEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~a 233 (328)
...+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+| .++.+
T Consensus 214 ---------------------------------~~~~~~~l~~-~g-i~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~ 258 (461)
T TIGR01350 214 ---------------------------------SKVVAKALKK-KG-VKILTNTKVTAVEKNDDQVVYENKGGETETLTG 258 (461)
T ss_pred ---------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEe
Confidence 0112233322 23 33778999999988778888777777 47999
Q ss_pred CEEEEccCCCchhh
Q 020277 234 DLLVGADGIWSKVR 247 (328)
Q Consensus 234 d~VV~AdG~~S~vr 247 (328)
|.||.|.|..+...
T Consensus 259 D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 259 EKVLVAVGRKPNTE 272 (461)
T ss_pred CEEEEecCCcccCC
Confidence 99999999887654
No 220
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.27 E-value=3.3e-05 Score=72.71 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=51.9
Q ss_pred EEecHHHHHHHHHHhcC-CceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchh
Q 020277 185 RVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
..++...+.+.|.+.+. ...++++++|++++.+++++.+++.+|..++||.||.|+|.|+..
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 46788888888887754 244788999999998888888888888889999999999999854
No 221
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.27 E-value=4.1e-06 Score=81.62 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+||+||||||+|++||..|+++|++|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 479999999999999999999999999999974
No 222
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.27 E-value=6.5e-05 Score=74.25 Aligned_cols=36 Identities=39% Similarity=0.625 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
....||+|||+| +|+++|+.+++.|.+|+|+|+.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 457899999999 899999999999999999999854
No 223
>PLN02507 glutathione reductase
Probab=98.24 E-value=2e-05 Score=76.89 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=73.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+..|..|++.|.+|+|+++.+...+. +.+ .+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~---------~d~-----------~~---------------- 246 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG---------FDD-----------EM---------------- 246 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc---------cCH-----------HH----------------
Confidence 579999999999999999999999999999987532110 000 10
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+|+++++|.|
T Consensus 247 --------------------------------~~~l~~~l~~-~G-I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~v 292 (499)
T PLN02507 247 --------------------------------RAVVARNLEG-RG-INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVV 292 (499)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEE
Confidence 1112233322 23 3377799999998777778888888889999999
Q ss_pred EEccCCCchh
Q 020277 237 VGADGIWSKV 246 (328)
Q Consensus 237 V~AdG~~S~v 246 (328)
|.|.|.....
T Consensus 293 l~a~G~~pn~ 302 (499)
T PLN02507 293 LFATGRAPNT 302 (499)
T ss_pred EEeecCCCCC
Confidence 9999987655
No 224
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.24 E-value=3e-05 Score=72.81 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=51.5
Q ss_pred EEEecHHHHHHHHHHhcC---CceEecCCeEEEEEEeCCe-EEEEEec-----CcEEecCEEEEccCCCchhhhhh
Q 020277 184 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLEN-----GQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~-v~v~~~~-----g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
+..++-..|.+.|.+.+. ...++++++|++|++.+++ |.|...| ..+++|++|++..|.+|.-.-+-
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqk 250 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQK 250 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHH
Confidence 456777888888877762 3468999999999998776 8887743 25899999999999998654443
No 225
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.24 E-value=1.5e-05 Score=85.09 Aligned_cols=36 Identities=33% Similarity=0.595 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 457999999999999999999999999999999864
No 226
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=2.8e-05 Score=75.06 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
..+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3589999999999999999999999999999984
No 227
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.24 E-value=4.2e-05 Score=72.09 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+||+|||+|++|+++|+.|+++|++|.|+|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 4799999999999999999999999999999754
No 228
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=2e-05 Score=76.11 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|+|||+||+|+++|..|++.|.+|+|+|+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999874
No 229
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.22 E-value=8.7e-06 Score=73.21 Aligned_cols=42 Identities=21% Similarity=0.094 Sum_probs=36.4
Q ss_pred eEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCch
Q 020277 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
.+..++.|..+..-.+++.++..+|++-++|.||.|+=..-.
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqA 274 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQA 274 (447)
T ss_pred eeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHH
Confidence 378888999999999999999999999999999999765543
No 230
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.22 E-value=1.8e-05 Score=83.09 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..++|+|||||||||+||..|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 357999999999999999999999999999999864
No 231
>PRK14727 putative mercuric reductase; Provisional
Probab=98.22 E-value=4.4e-06 Score=81.09 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.++||+|||+||+|+.+|..|++.|.+|+|+|+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 46899999999999999999999999999999873
No 232
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.21 E-value=2.7e-05 Score=75.37 Aligned_cols=101 Identities=26% Similarity=0.393 Sum_probs=73.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++++|||+|..|+.+|..|++.|.+|+++++.+...... .+ .+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~---------d~-----------~~---------------- 220 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE---------DA-----------DA---------------- 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC---------CH-----------HH----------------
Confidence 4789999999999999999999999999999875421100 00 00
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
...+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+|+++++|.|
T Consensus 221 --------------------------------~~~l~~~L~~-~g-V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~v 266 (466)
T PRK07845 221 --------------------------------AEVLEEVFAR-RG-MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHA 266 (466)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEE
Confidence 1112333322 23 3377789999998777788888888889999999
Q ss_pred EEccCCCchhh
Q 020277 237 VGADGIWSKVR 247 (328)
Q Consensus 237 V~AdG~~S~vr 247 (328)
|.|.|......
T Consensus 267 l~a~G~~pn~~ 277 (466)
T PRK07845 267 LMAVGSVPNTA 277 (466)
T ss_pred EEeecCCcCCC
Confidence 99999876553
No 233
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=1e-05 Score=75.59 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHC---CCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~---g~~v~~~~~~~~ 111 (328)
+|+|||||++|+.+|..|.++ +++|+|+|+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999644 689999998754
No 234
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.21 E-value=2.2e-05 Score=75.58 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=71.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+..|..|++.|.+|+++++.+.... .++..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--------------------~~d~~~---------------- 212 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--------------------HLDEDI---------------- 212 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--------------------ccCHHH----------------
Confidence 57999999999999999999999999999998753110 000000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
+..+.+.+ + .+ ..++.+++|++++.+++++.+++.+|+++++|.|
T Consensus 213 --------------------------------~~~l~~~~-~-~g-I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~v 257 (452)
T TIGR03452 213 --------------------------------SDRFTEIA-K-KK-WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVL 257 (452)
T ss_pred --------------------------------HHHHHHHH-h-cC-CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEE
Confidence 01112221 1 12 3477899999998777778888888889999999
Q ss_pred EEccCCCchh
Q 020277 237 VGADGIWSKV 246 (328)
Q Consensus 237 V~AdG~~S~v 246 (328)
|.|.|.....
T Consensus 258 l~a~G~~pn~ 267 (452)
T TIGR03452 258 LVATGRVPNG 267 (452)
T ss_pred EEeeccCcCC
Confidence 9999987643
No 235
>PRK13984 putative oxidoreductase; Provisional
Probab=98.21 E-value=2.1e-06 Score=85.67 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=49.0
Q ss_pred cccccccccCCCCccchhHhHHhH-----HhcCCC-CCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 39 HCINYKFRTGTSGQSKNPTQMKAA-----VAESPT-NNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 39 ~c~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.|...|.+...+.++......+.. .+.... .....+.+.++|+|||+|++|+++|..|+++|++|+|||+.+.
T Consensus 239 ~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 239 KCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred hHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 555545555555565544333322 111111 1112345688999999999999999999999999999998764
No 236
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.20 E-value=2.7e-05 Score=74.95 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..+++.|.+|+++++.+.... .+.+++
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------~~d~~~----------- 209 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------GFDDDM----------- 209 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------ccCHHH-----------
Confidence 357899999999999999999999999999998753110 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+|+++.+|.
T Consensus 210 ---------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~ 254 (446)
T TIGR01424 210 ---------------------------------RALLARNMEG-RG-IRIHPQTSLTSITKTDDGLKVTLSHGEEIVADV 254 (446)
T ss_pred ---------------------------------HHHHHHHHHH-CC-CEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCE
Confidence 0112233322 23 337778999999877777778888888999999
Q ss_pred EEEccCCCchh
Q 020277 236 LVGADGIWSKV 246 (328)
Q Consensus 236 VV~AdG~~S~v 246 (328)
||.|.|.....
T Consensus 255 viva~G~~pn~ 265 (446)
T TIGR01424 255 VLFATGRSPNT 265 (446)
T ss_pred EEEeeCCCcCC
Confidence 99999987654
No 237
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.19 E-value=1.9e-05 Score=74.28 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
++|+|||||+||+.+|..|.+++ .+|+|+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 58999999999999999998864 57999998764
No 238
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.19 E-value=3.1e-05 Score=74.33 Aligned_cols=100 Identities=27% Similarity=0.332 Sum_probs=70.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|++|+.+|..|++.|.+|+++|+.+...... .+ . +
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~---------~~-----------~----~----------- 200 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE---------EP-----------S----V----------- 200 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC---------CH-----------H----H-----------
Confidence 35789999999999999999999999999999975421000 00 0 0
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
+..+.+.|.+ .+. .++.+++|++++.+++.+.+. .+++++.+|.
T Consensus 201 ---------------------------------~~~~~~~l~~-~GI-~i~~~~~V~~i~~~~~~v~v~-~~g~~i~~D~ 244 (438)
T PRK07251 201 ---------------------------------AALAKQYMEE-DGI-TFLLNAHTTEVKNDGDQVLVV-TEDETYRFDA 244 (438)
T ss_pred ---------------------------------HHHHHHHHHH-cCC-EEEcCCEEEEEEecCCEEEEE-ECCeEEEcCE
Confidence 0111222222 233 377789999998766666554 4677899999
Q ss_pred EEEccCCCchh
Q 020277 236 LVGADGIWSKV 246 (328)
Q Consensus 236 VV~AdG~~S~v 246 (328)
||.|.|.....
T Consensus 245 viva~G~~p~~ 255 (438)
T PRK07251 245 LLYATGRKPNT 255 (438)
T ss_pred EEEeeCCCCCc
Confidence 99999987654
No 239
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=1.9e-06 Score=83.33 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=35.6
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...++++|+|||||++||+||.+|...|++|+|+|.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 445678999999999999999999999999999999864
No 240
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.19 E-value=6e-05 Score=78.55 Aligned_cols=36 Identities=39% Similarity=0.567 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...||+|||+|.|||+||+.+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999864
No 241
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.18 E-value=3.1e-05 Score=74.54 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||||..|+.+|..|++.|.+|+++++.+...+. +.+ .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---------~d~-----------~~---------------- 209 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---------FDS-----------MI---------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------cCH-----------HH----------------
Confidence 579999999999999999999999999999987542110 000 00
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCe-EEEEEecC-cEEecC
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGD 234 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-~~i~ad 234 (328)
+..+.+.|.+ .+ ..++.+++|++++.++++ +.+++++| +++.+|
T Consensus 210 --------------------------------~~~~~~~l~~-~g-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 210 --------------------------------SETITEEYEK-EG-INVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVD 255 (450)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcC
Confidence 1112333322 23 337789999999875444 67777777 579999
Q ss_pred EEEEccCCCchhh
Q 020277 235 LLVGADGIWSKVR 247 (328)
Q Consensus 235 ~VV~AdG~~S~vr 247 (328)
.||.|.|......
T Consensus 256 ~vi~a~G~~pn~~ 268 (450)
T TIGR01421 256 ELIWAIGRKPNTK 268 (450)
T ss_pred EEEEeeCCCcCcc
Confidence 9999999886653
No 242
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.17 E-value=1.9e-06 Score=83.65 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.+||+|||||+.||++|..|+++|++|+|+|+...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 458999999999999999999999999999998754
No 243
>PLN02546 glutathione reductase
Probab=98.16 E-value=1.3e-05 Score=78.94 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEcc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~ 108 (328)
...+||+|||+||+|+.+|..++++|++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999996
No 244
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.15 E-value=4.4e-05 Score=73.88 Aligned_cols=102 Identities=29% Similarity=0.396 Sum_probs=71.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+|+|+.+..... .+..+
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~--------------------~d~~~--------------- 215 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN--------------------EDAEV--------------- 215 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc--------------------cCHHH---------------
Confidence 3579999999999999999999999999999987532100 00000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEe--cC--cEE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--NG--QCY 231 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~i 231 (328)
+..+.+.|.+ .+. .++.+++|++++.+++.+.+++. +| .++
T Consensus 216 ---------------------------------~~~l~~~l~~-~gV-~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i 260 (466)
T PRK07818 216 ---------------------------------SKEIAKQYKK-LGV-KILTGTKVESIDDNGSKVTVTVSKKDGKAQEL 260 (466)
T ss_pred ---------------------------------HHHHHHHHHH-CCC-EEEECCEEEEEEEeCCeEEEEEEecCCCeEEE
Confidence 1112333322 243 37789999999877666666654 56 379
Q ss_pred ecCEEEEccCCCchhh
Q 020277 232 AGDLLVGADGIWSKVR 247 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr 247 (328)
++|.||.|.|......
T Consensus 261 ~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 261 EADKVLQAIGFAPRVE 276 (466)
T ss_pred EeCEEEECcCcccCCC
Confidence 9999999999876653
No 245
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=5.1e-05 Score=73.41 Aligned_cols=101 Identities=27% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+..|..+++.|.+|+++|+.+..... +.+ .+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~---------~d~-----------~~--------------- 217 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG---------TDT-----------ET--------------- 217 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---------CCH-----------HH---------------
Confidence 4589999999999999999999999999999987532100 000 00
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEe---c--CcE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---N--GQC 230 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~--g~~ 230 (328)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+. + +++
T Consensus 218 ---------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~ 262 (466)
T PRK06115 218 ---------------------------------AKTLQKALTK-QG-MKFKLGSKVTGATAGADGVSLTLEPAAGGAAET 262 (466)
T ss_pred ---------------------------------HHHHHHHHHh-cC-CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE
Confidence 0112233322 23 337779999999876666665543 2 357
Q ss_pred EecCEEEEccCCCchh
Q 020277 231 YAGDLLVGADGIWSKV 246 (328)
Q Consensus 231 i~ad~VV~AdG~~S~v 246 (328)
+++|.||.|.|..+..
T Consensus 263 i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 263 LQADYVLVAIGRRPYT 278 (466)
T ss_pred EEeCEEEEccCCcccc
Confidence 9999999999987644
No 246
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=4.5e-05 Score=73.96 Aligned_cols=102 Identities=25% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+..+.
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~~-------------- 227 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA--------------------ADEQVA-------------- 227 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc--------------------CCHHHH--------------
Confidence 3579999999999999999999999999999987532100 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC----cEE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCY 231 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i 231 (328)
..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.++ .++
T Consensus 228 ----------------------------------~~~~~~l~~-~g-i~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i 271 (475)
T PRK06327 228 ----------------------------------KEAAKAFTK-QG-LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTL 271 (475)
T ss_pred ----------------------------------HHHHHHHHH-cC-cEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEE
Confidence 111222222 23 34777999999988777777776553 479
Q ss_pred ecCEEEEccCCCchhh
Q 020277 232 AGDLLVGADGIWSKVR 247 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr 247 (328)
++|.||.|.|......
T Consensus 272 ~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 272 EVDKLIVSIGRVPNTD 287 (475)
T ss_pred EcCEEEEccCCccCCC
Confidence 9999999999887643
No 247
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.14 E-value=1.2e-05 Score=71.52 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=98.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCc-----cccCCCccccceeechhHHHH-HHhcCchHHHHHH
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS-----AIRGEGQYRGPIQIQSNALAA-LEAIDLDVAEEVM 145 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~-----~~~~~g~~~~~~~l~~~~~~~-l~~l~~g~~~~l~ 145 (328)
....+|.+|||||+.|++.|..|.-+ +.+|.|+|+... ....+|..+++|-..|+++++ |---|..+.-+.-
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 45679999999999999999999988 899999999754 223455666778888988765 1111222222222
Q ss_pred -Hhcccccc---cc--------c--------ccccCCCC------ceEEeecCC-chhhhcCCCeEEEecHHHHHHHHHH
Q 020277 146 -RAGCVTGD---RI--------N--------GLVDGISG------SWYIKFDTF-TPAAEKGLPVTRVISRMTLQQILAK 198 (328)
Q Consensus 146 -~~~~~~~~---~~--------~--------~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~i~r~~l~~~L~~ 198 (328)
+...+... .+ . +..++..+ ....+.+.. ........|..-.++...+...+.+
T Consensus 125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e 204 (453)
T KOG2665|consen 125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE 204 (453)
T ss_pred hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence 11111100 00 0 00000000 000000000 0000111233345555555555544
Q ss_pred hcC--CceEecCCeEEEEEEeCCe-----EEEEEecCcEEecCEEEEccCCCchhhhhh
Q 020277 199 AVG--DEIILNESNVIDFKDHGDK-----VSVVLENGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 199 ~~~--~~~i~~~~~v~~i~~~~~~-----v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
.+. ...+..+-+++.+.+..+. ++|.-..++++++..||-|.|..|---..+
T Consensus 205 dF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 205 DFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 331 1236678888888765543 344434467999999999999998655544
No 248
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.12 E-value=2.7e-05 Score=79.90 Aligned_cols=101 Identities=24% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+|||||+.|+.+|..|++.|.+|+|+|+.+.... ..++...
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------~~ld~~~--------------- 184 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------KQLDQTA--------------- 184 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------hhcCHHH---------------
Confidence 357899999999999999999999999999998753100 0000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|. ..+.. ++++++++++..++....+++.+|+++.+|+
T Consensus 185 ---------------------------------~~~l~~~l~-~~GV~-v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~ 229 (785)
T TIGR02374 185 ---------------------------------GRLLQRELE-QKGLT-FLLEKDTVEIVGATKADRIRFKDGSSLEADL 229 (785)
T ss_pred ---------------------------------HHHHHHHHH-HcCCE-EEeCCceEEEEcCCceEEEEECCCCEEEcCE
Confidence 011222222 23433 7778889888765555568889999999999
Q ss_pred EEEccCCCch
Q 020277 236 LVGADGIWSK 245 (328)
Q Consensus 236 VV~AdG~~S~ 245 (328)
||.|.|....
T Consensus 230 Vi~a~G~~Pn 239 (785)
T TIGR02374 230 IVMAAGIRPN 239 (785)
T ss_pred EEECCCCCcC
Confidence 9999998753
No 249
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=2.8e-05 Score=73.19 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=35.6
Q ss_pred eEecCCeEEEEEEe--CCeEEEEEecCcEEecCEEEEccCCCchhhhh
Q 020277 204 IILNESNVIDFKDH--GDKVSVVLENGQCYAGDLLVGADGIWSKVRKN 249 (328)
Q Consensus 204 ~i~~~~~v~~i~~~--~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr~~ 249 (328)
..+...+++++..+ ..++.+...+|.+..||.+|.|+|.--+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 44556788888777 56778888999999999999999976555444
No 250
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.12 E-value=5.3e-05 Score=73.20 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=69.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|++|+.+|..|++.|.+|+++++.+..... .+..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~---------------- 209 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR--------------------EEPEI---------------- 209 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc--------------------cCHHH----------------
Confidence 479999999999999999999999999999987532100 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEec---CcEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN---GQCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~~i~a 233 (328)
+..+.+.|.+ .+ ..++++++|++++.+++.+.+++.+ ++++++
T Consensus 210 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 255 (463)
T TIGR02053 210 --------------------------------SAAVEEALAE-EG-IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEA 255 (463)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0112233322 23 3377799999998776666665542 358999
Q ss_pred CEEEEccCCCchh
Q 020277 234 DLLVGADGIWSKV 246 (328)
Q Consensus 234 d~VV~AdG~~S~v 246 (328)
|.||.|.|..+..
T Consensus 256 D~ViiA~G~~p~~ 268 (463)
T TIGR02053 256 DELLVATGRRPNT 268 (463)
T ss_pred CEEEEeECCCcCC
Confidence 9999999987654
No 251
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.11 E-value=0.00022 Score=64.26 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~ 111 (328)
...+|+|||||..|.+.|+.|.++ |++|.|+|++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 357999999999999999999874 799999999865
No 252
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.11 E-value=3.4e-05 Score=74.92 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
++||+|||+||+|+.+|..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 479999999999999999999999999999975
No 253
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=5.4e-05 Score=73.10 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=69.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|++|+.+|..|++.|.+|+++++.+..... . + .++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~--------------------~--d--~e~------------ 213 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG--------------------E--D--EDI------------ 213 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc--------------------c--c--HHH------------
Confidence 578999999999999999999999999999987532100 0 0 000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC--cEEecC
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 234 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~ad 234 (328)
+..+.+.|.+ .+ ..++++++|++++.++..+.+.. +| .++++|
T Consensus 214 --------------------------------~~~l~~~L~~-~G-I~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D 258 (458)
T PRK06912 214 --------------------------------AHILREKLEN-DG-VKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAE 258 (458)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeC
Confidence 1112333332 23 33777899999987666555543 34 369999
Q ss_pred EEEEccCCCchhh
Q 020277 235 LLVGADGIWSKVR 247 (328)
Q Consensus 235 ~VV~AdG~~S~vr 247 (328)
.||.|.|..+.+.
T Consensus 259 ~vivA~G~~p~~~ 271 (458)
T PRK06912 259 FVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEecCCccCCC
Confidence 9999999887653
No 254
>PRK06370 mercuric reductase; Validated
Probab=98.10 E-value=5.9e-05 Score=72.89 Aligned_cols=101 Identities=27% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+..+
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~--------------------~~~~~--------------- 214 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR--------------------EDEDV--------------- 214 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc--------------------cCHHH---------------
Confidence 3579999999999999999999999999999987542100 00000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEe---cCcEEe
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---NGQCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~i~ 232 (328)
+..+.+.|.+ .+ ..++++++|.+++.+++++.+.+. ++.++.
T Consensus 215 ---------------------------------~~~l~~~l~~-~G-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~ 259 (463)
T PRK06370 215 ---------------------------------AAAVREILER-EG-IDVRLNAECIRVERDGDGIAVGLDCNGGAPEIT 259 (463)
T ss_pred ---------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEE
Confidence 0112223322 23 337779999999877666555442 345799
Q ss_pred cCEEEEccCCCchh
Q 020277 233 GDLLVGADGIWSKV 246 (328)
Q Consensus 233 ad~VV~AdG~~S~v 246 (328)
+|.||.|.|.....
T Consensus 260 ~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 260 GSHILVAVGRVPNT 273 (463)
T ss_pred eCEEEECcCCCcCC
Confidence 99999999987654
No 255
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.09 E-value=4.8e-06 Score=80.31 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHH--CCCeEEEEccCCcc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKR--KGFEVLVFEKDMSA 112 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~--~g~~v~~~~~~~~~ 112 (328)
...+++|+|||+|||||.+|..|++ .|++|+|||+.+.+
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 3457899999999999999999987 79999999998753
No 256
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=5.5e-05 Score=73.30 Aligned_cols=100 Identities=28% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+.+|..|++.|.+|+|+|+.+..... ++..+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~--------------------~d~~~---------------- 217 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA--------------------ADKDI---------------- 217 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc--------------------CCHHH----------------
Confidence 479999999999999999999999999999987642100 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC----cEEe
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYA 232 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i~ 232 (328)
+..+.+.|.+. ..++.+++|++++.+++++.+++.++ .+++
T Consensus 218 --------------------------------~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~ 262 (471)
T PRK06467 218 --------------------------------VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQR 262 (471)
T ss_pred --------------------------------HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEE
Confidence 01122333222 33777899999987777777766543 3699
Q ss_pred cCEEEEccCCCchhh
Q 020277 233 GDLLVGADGIWSKVR 247 (328)
Q Consensus 233 ad~VV~AdG~~S~vr 247 (328)
+|.||.|.|......
T Consensus 263 ~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 263 YDAVLVAVGRVPNGK 277 (471)
T ss_pred eCEEEEeecccccCC
Confidence 999999999987653
No 257
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=3.6e-06 Score=79.75 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=32.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
++|+|+|||+|||+||+.|+.+|++|||+|+++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 58999999999999999999999999999998753
No 258
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.07 E-value=4.3e-05 Score=78.78 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=71.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++++|||||+.|+.+|..|++.|.+|+|+|+.+.... ..++...
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------~~ld~~~--------------- 189 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------EQLDQMG--------------- 189 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------hhcCHHH---------------
Confidence 357899999999999999999999999999998753100 0000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeC--CeEEEEEecCcEEec
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAG 233 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~a 233 (328)
...+.+.| +..+.. ++.+++++++..++ ....+.+.+|+++.+
T Consensus 190 ---------------------------------~~~l~~~L-~~~GV~-v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~ 234 (847)
T PRK14989 190 ---------------------------------GEQLRRKI-ESMGVR-VHTSKNTLEIVQEGVEARKTMRFADGSELEV 234 (847)
T ss_pred ---------------------------------HHHHHHHH-HHCCCE-EEcCCeEEEEEecCCCceEEEEECCCCEEEc
Confidence 01123333 223433 77899999997543 345678889999999
Q ss_pred CEEEEccCCCchh
Q 020277 234 DLLVGADGIWSKV 246 (328)
Q Consensus 234 d~VV~AdG~~S~v 246 (328)
|+||.|.|.....
T Consensus 235 D~Vv~A~G~rPn~ 247 (847)
T PRK14989 235 DFIVFSTGIRPQD 247 (847)
T ss_pred CEEEECCCcccCc
Confidence 9999999987643
No 259
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.06 E-value=7e-06 Score=75.94 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC-CeEEEEccCCccccCCCccccceeechhHH--HHHHhc--------CchHHHHHH
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNAL--AALEAI--------DLDVAEEVM 145 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~--~~l~~l--------~~g~~~~l~ 145 (328)
.+|+++||.||++|++|..|...+ .++..+|+.+...-..| +.+.-..+ ..|+.| ...+.+-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-----mll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~ 76 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-----MLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLH 76 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-----G--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-----cCCCCCccccccccccCcCcCCCCcccHHHHHH
Confidence 368999999999999999999986 89999999875322222 11111100 111111 001111111
Q ss_pred HhcccccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHh---cCCceEecCCeEEEEEEeCC---
Q 020277 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGD--- 219 (328)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~--- 219 (328)
+. +. +..+- ..+ .....|.++.+.|.-. ++.. ++++.+|++|+.+++
T Consensus 77 ~~----------------~r-l~~f~------~~~---~~~p~R~ef~dYl~Wva~~~~~~-v~~~~~V~~I~~~~~~~~ 129 (341)
T PF13434_consen 77 EH----------------GR-LYEFY------NRG---YFFPSRREFNDYLRWVAEQLDNQ-VRYGSEVTSIEPDDDGDE 129 (341)
T ss_dssp HT----------------T--HHHHH------HH-----SS-BHHHHHHHHHHHHCCGTTT-EEESEEEEEEEEEEETTE
T ss_pred Hc----------------CC-hhhhh------hcC---CCCCCHHHHHHHHHHHHHhCCCc-eEECCEEEEEEEecCCCc
Confidence 11 00 00000 000 1345677777777554 3433 788999999987654
Q ss_pred -eEEEEEe----cCcEEecCEEEEccCCCchhhhhh
Q 020277 220 -KVSVVLE----NGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 220 -~v~v~~~----~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
.++|++. +++++.|+.||+|.|....+...+
T Consensus 130 ~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 130 DLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred cEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 4788774 346899999999999665555544
No 260
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.06 E-value=6.8e-05 Score=71.70 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+|++|||+||+|..+|..+++.|.+|.++|+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 56899999999999999999999999999999995
No 261
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=7.2e-05 Score=72.49 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+++|+|||||++|+.+|..|++.|.+|+++|+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 57999999999999999999999999999998753
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.04 E-value=3.2e-05 Score=79.67 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~ 111 (328)
+++|+|||+|++|+.+|..|.++ +++|||+++.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 45899999999999999999764 579999999865
No 263
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.04 E-value=9.5e-05 Score=71.00 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+...... .+ .+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------~~-----------~~--------------- 201 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE---------DR-----------DI--------------- 201 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc---------CH-----------HH---------------
Confidence 35699999999999999999999999999999875311000 00 00
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|.+ .+. .++++++|++++.+++.+++.+.++ ++.+|.
T Consensus 202 ---------------------------------~~~l~~~l~~-~gV-~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~ 245 (441)
T PRK08010 202 ---------------------------------ADNIATILRD-QGV-DIILNAHVERISHHENQVQVHSEHA-QLAVDA 245 (441)
T ss_pred ---------------------------------HHHHHHHHHh-CCC-EEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCE
Confidence 0112233322 233 3777899999988777777766555 589999
Q ss_pred EEEccCCCchh
Q 020277 236 LVGADGIWSKV 246 (328)
Q Consensus 236 VV~AdG~~S~v 246 (328)
||.|.|.....
T Consensus 246 vl~a~G~~pn~ 256 (441)
T PRK08010 246 LLIASGRQPAT 256 (441)
T ss_pred EEEeecCCcCC
Confidence 99999988754
No 264
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.01 E-value=2.4e-05 Score=78.31 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
..+||+|||+||+|..+|..++++|.+|+|+|+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999999999999975
No 265
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.00 E-value=8.3e-05 Score=72.55 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=70.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+.+|..|++.|.+|+++++.. .. .. +.+ .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l--~~-------~d~-----------~~---------------- 224 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL--RG-------FDR-----------QC---------------- 224 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc--cc-------CCH-----------HH----------------
Confidence 4689999999999999999999999999998642 11 00 000 00
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
...+.+.|.+ .+. .++.++++.+++..++.+.+.+.+|+++.+|.|
T Consensus 225 --------------------------------~~~l~~~l~~-~GV-~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~v 270 (499)
T PTZ00052 225 --------------------------------SEKVVEYMKE-QGT-LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTV 270 (499)
T ss_pred --------------------------------HHHHHHHHHH-cCC-EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEE
Confidence 0112233322 233 377788888888766667777888888999999
Q ss_pred EEccCCCchhh
Q 020277 237 VGADGIWSKVR 247 (328)
Q Consensus 237 V~AdG~~S~vr 247 (328)
|.|.|..+...
T Consensus 271 l~a~G~~pn~~ 281 (499)
T PTZ00052 271 LYATGRKPDIK 281 (499)
T ss_pred EEeeCCCCCcc
Confidence 99999887653
No 266
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.00 E-value=0.00011 Score=71.35 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC---CCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~---g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~ 152 (328)
.+++|+|||||+.|+.+|..++.. |.+|+|+|+.+...+. ++..+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------~d~~~------------ 233 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------FDSTL------------ 233 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------cCHHH------------
Confidence 357999999999999999876654 9999999987542100 00011
Q ss_pred ccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCe-EEEEEecCcEE
Q 020277 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCY 231 (328)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i 231 (328)
+..+.+.|.+ .+ ..++.+++|++++.++++ ..+.+.+|+++
T Consensus 234 ------------------------------------~~~l~~~L~~-~G-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i 275 (486)
T TIGR01423 234 ------------------------------------RKELTKQLRA-NG-INIMTNENPAKVTLNADGSKHVTFESGKTL 275 (486)
T ss_pred ------------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEEcCCceEEEEEcCCCEE
Confidence 0112333322 23 337778999999865443 56777788899
Q ss_pred ecCEEEEccCCCchhh
Q 020277 232 AGDLLVGADGIWSKVR 247 (328)
Q Consensus 232 ~ad~VV~AdG~~S~vr 247 (328)
++|.||.|.|......
T Consensus 276 ~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 276 DVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EcCEEEEeeCCCcCcc
Confidence 9999999999876553
No 267
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.00 E-value=0.00071 Score=62.14 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=48.6
Q ss_pred EEEecHHHHHHHHHHhcC--CceEecCCeEEEEEEeCCeEE-EEEecCcEEecCEEEEccCCCchh
Q 020277 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKV 246 (328)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~ad~VV~AdG~~S~v 246 (328)
...++...+...|.+.+. ...++.+++|++++.+++++. |.+.+| ++.||.||.|+|+++..
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 357788888888877652 245788999999998888765 555455 89999999999999864
No 268
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=2e-05 Score=75.06 Aligned_cols=145 Identities=19% Similarity=0.338 Sum_probs=79.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc------cCCCccccceeechhHHHHHHhcCchHHHHHHHhcc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~------~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~ 149 (328)
..+||+|||||-||+.||+..+|.|.++.++.-+.... ...|..+-+ ..++-++.|| |+.........
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG-----~lvrEIDALG-G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKG-----HLVREIDALG-GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccc-----eeEEeehhcc-chHHHhhhhcC
Confidence 34899999999999999999999999999997764321 011110001 1122234443 33333322211
Q ss_pred cccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC--ceEecCCeEEEEEEeCC-eE-EEEE
Q 020277 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD-KV-SVVL 225 (328)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~ 225 (328)
.. +. +++...|.-. + + + ...+++....+.+.+.+.. ..-.+...|.++..+++ .+ -|.+
T Consensus 77 IQ---~r-~LN~sKGPAV-r----------a-~-RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t 139 (621)
T COG0445 77 IQ---FR-MLNSSKGPAV-R----------A-P-RAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVT 139 (621)
T ss_pred Cc---hh-hccCCCcchh-c----------c-h-hhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEe
Confidence 11 00 1111111100 0 0 0 1234444444444444421 22334677888877555 34 4788
Q ss_pred ecCcEEecCEEEEccCCC
Q 020277 226 ENGQCYAGDLLVGADGIW 243 (328)
Q Consensus 226 ~~g~~i~ad~VV~AdG~~ 243 (328)
.+|..+.|+.||+++|..
T Consensus 140 ~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 140 ADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCCeeecCEEEEeeccc
Confidence 899999999999999965
No 269
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.97 E-value=2.6e-05 Score=75.73 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC-CCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~~ 109 (328)
+.+||+|||+||+|..+|..+++. |.+|.|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999997 9999999984
No 270
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.97 E-value=0.00012 Score=70.04 Aligned_cols=99 Identities=20% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+|||+|++|+.+|..|++.|.+|+++++.+.... + .++..+
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------~-------~~~~~~--------------- 181 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------K-------LFDEEM--------------- 181 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------c-------ccCHHH---------------
Confidence 357999999999999999999999999999998753100 0 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|. ..+.. ++++++|.+++.++. + +.+.+|+++.+|.
T Consensus 182 ---------------------------------~~~~~~~l~-~~gV~-v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~ 224 (427)
T TIGR03385 182 ---------------------------------NQIVEEELK-KHEIN-LRLNEEVDSIEGEER-V-KVFTSGGVYQADM 224 (427)
T ss_pred ---------------------------------HHHHHHHHH-HcCCE-EEeCCEEEEEecCCC-E-EEEcCCCEEEeCE
Confidence 011222222 22433 677899999976443 3 5567888999999
Q ss_pred EEEccCCCch
Q 020277 236 LVGADGIWSK 245 (328)
Q Consensus 236 VV~AdG~~S~ 245 (328)
||.|.|....
T Consensus 225 vi~a~G~~p~ 234 (427)
T TIGR03385 225 VILATGIKPN 234 (427)
T ss_pred EEECCCccCC
Confidence 9999998754
No 271
>PRK07233 hypothetical protein; Provisional
Probab=97.97 E-value=7.6e-06 Score=78.08 Aligned_cols=53 Identities=21% Similarity=0.073 Sum_probs=40.5
Q ss_pred HHHHHHHhcC--CceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCc
Q 020277 192 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 244 (328)
Q Consensus 192 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S 244 (328)
|.+.|.+.+. ...++++++|++|+.+++++++...++++++||.||.|...+.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4455555442 2358899999999988888776667888999999999998754
No 272
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.96 E-value=0.00017 Score=66.81 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=77.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC--eEEEEccCCcccc-CCCccccceeechhHHHHHHhcCchHHHHHHHhccc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~--~v~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~ 150 (328)
....++|+|||||..+...+..|.+++. +|+++-|++.... ..... ..-...|.-++.+..+....-.++......
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f-~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~ 265 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF-VNEIFSPEYVDYFYSLPDEERRELLREQRH 265 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC-HHGGGSHHHHHHHHTS-HHHHHHHHHHTGG
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc-hhhhcCchhhhhhhcCCHHHHHHHHHHhHh
Confidence 3467899999999999999999999875 8999988764221 11111 012466777777776644333333332100
Q ss_pred ccccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHH---HHHHHHh-c-C--CceEecCCeEEEEEEeC-CeEE
Q 020277 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTL---QQILAKA-V-G--DEIILNESNVIDFKDHG-DKVS 222 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~L~~~-~-~--~~~i~~~~~v~~i~~~~-~~v~ 222 (328)
. .. -.|+...+ .+.|.+. + + ...++.+++|++++.++ +++.
T Consensus 266 ~-----------ny--------------------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~ 314 (341)
T PF13434_consen 266 T-----------NY--------------------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR 314 (341)
T ss_dssp G-----------TS--------------------SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE
T ss_pred h-----------cC--------------------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE
Confidence 0 00 12333322 2222222 2 2 24478899999999988 4899
Q ss_pred EEEecC-----cEEecCEEEEccCC
Q 020277 223 VVLENG-----QCYAGDLLVGADGI 242 (328)
Q Consensus 223 v~~~~g-----~~i~ad~VV~AdG~ 242 (328)
+++.+. .++++|.||.|+|.
T Consensus 315 l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 315 LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EEEEETTT--EEEEEESEEEE---E
T ss_pred EEEEECCCCCeEEEecCEEEEcCCc
Confidence 888762 47899999999995
No 273
>PRK07208 hypothetical protein; Provisional
Probab=97.96 E-value=8.9e-06 Score=78.89 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.++|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 467899999999999999999999999999999754
No 274
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.96 E-value=8.9e-06 Score=82.43 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=45.8
Q ss_pred CCCccchhHhHHhHHhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 49 TSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+.+.|.+|+...... ....+..+.++|+|||||++||++|+.|+++|++|+|+|+...
T Consensus 213 ~~g~in~gv~~~~~~~~---~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 213 EHGYINFGVAPVIKEAQ---LRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred ccCceeeeccccccccc---cCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 44567788887665211 1113345678999999999999999999999999999999754
No 275
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.94 E-value=1.4e-05 Score=76.36 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHH-HCCCeEEEEccCCcc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAK-RKGFEVLVFEKDMSA 112 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~-~~g~~v~~~~~~~~~ 112 (328)
..+++|+|||+|||||.+|..|. +.|++|+|||+.+.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35689999999999999999764 679999999999764
No 276
>PRK14694 putative mercuric reductase; Provisional
Probab=97.94 E-value=0.00015 Score=70.15 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+.+|..|++.|.+|+++++... ... .+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~-l~~--------------------~~~~~---------------- 220 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRV-LSQ--------------------EDPAV---------------- 220 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC-CCC--------------------CCHHH----------------
Confidence 57999999999999999999999999999986421 000 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
...+.+.|.+ .+. .++.+++|.+++.+++.+.+.+.+ +++++|.|
T Consensus 221 --------------------------------~~~l~~~l~~-~GI-~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~v 265 (468)
T PRK14694 221 --------------------------------GEAIEAAFRR-EGI-EVLKQTQASEVDYNGREFILETNA-GTLRAEQL 265 (468)
T ss_pred --------------------------------HHHHHHHHHh-CCC-EEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEE
Confidence 0112223322 233 367788999998776666665544 47999999
Q ss_pred EEccCCCchh
Q 020277 237 VGADGIWSKV 246 (328)
Q Consensus 237 V~AdG~~S~v 246 (328)
|.|.|..+..
T Consensus 266 i~a~G~~pn~ 275 (468)
T PRK14694 266 LVATGRTPNT 275 (468)
T ss_pred EEccCCCCCc
Confidence 9999988755
No 277
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.93 E-value=0.00013 Score=70.13 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 47999999999999999999999999999998753
No 278
>PLN02576 protoporphyrinogen oxidase
Probab=97.92 E-value=1.2e-05 Score=78.28 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~~~~ 111 (328)
...++|+|||||++||++|+.|++. |++|+|+|+...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 3456899999999999999999999 999999999864
No 279
>PRK14727 putative mercuric reductase; Provisional
Probab=97.92 E-value=0.00017 Score=70.12 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|+.|+..|..|++.|.+|+++++... . .. ..+ .+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-l--~~-------~d~-----------~~---------------- 230 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-L--FR-------EDP-----------LL---------------- 230 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC-C--Cc-------chH-----------HH----------------
Confidence 57999999999999999999999999999986421 0 00 000 00
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEE
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~V 236 (328)
...+.+.|.+ .+. .++++++|++++.+++++.+.+.++ ++.+|.|
T Consensus 231 --------------------------------~~~l~~~L~~-~GV-~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~V 275 (479)
T PRK14727 231 --------------------------------GETLTACFEK-EGI-EVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKL 275 (479)
T ss_pred --------------------------------HHHHHHHHHh-CCC-EEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEE
Confidence 0112222222 233 3777899999987777777766555 6999999
Q ss_pred EEccCCCchhh
Q 020277 237 VGADGIWSKVR 247 (328)
Q Consensus 237 V~AdG~~S~vr 247 (328)
|.|.|..+...
T Consensus 276 lvA~G~~pn~~ 286 (479)
T PRK14727 276 LISTGRHANTH 286 (479)
T ss_pred EEccCCCCCcc
Confidence 99999987553
No 280
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.2e-05 Score=70.67 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEE
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVF 106 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~ 106 (328)
+..++|+||||||||-++|.+.+|+|++.-++
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 45689999999999999999999999876444
No 281
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.91 E-value=1.3e-05 Score=78.09 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+||+|||||++||++|..|+++|++|+|+|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6899999999999999999999999999999864
No 282
>PLN02487 zeta-carotene desaturase
Probab=97.91 E-value=2.3e-05 Score=77.20 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=47.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcc----c----cc----eeechhHHHHHHhcCchHHHH
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQY----R----GP----IQIQSNALAALEAIDLDVAEE 143 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~----~----~~----~~l~~~~~~~l~~l~~g~~~~ 143 (328)
++++|+|||+|++||++|+.|+++|++|+|+|+.+......+.+ + .+ +...++..++++++ |+.++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L--Gl~~~ 151 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV--GADEN 151 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc--CCccc
Confidence 34699999999999999999999999999999986532111100 0 01 12347788889988 44444
Q ss_pred H
Q 020277 144 V 144 (328)
Q Consensus 144 l 144 (328)
+
T Consensus 152 ~ 152 (569)
T PLN02487 152 L 152 (569)
T ss_pred c
Confidence 3
No 283
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.89 E-value=9.2e-05 Score=66.12 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.|+|||+|.|||+++..+-..|-.|+++|+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 699999999999999999999888999999854
No 284
>PTZ00058 glutathione reductase; Provisional
Probab=97.89 E-value=0.00023 Score=70.25 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=68.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++|+|||+|..|+..|..|++.|.+|+++++.+...+. ++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~--------------------~d~~i---------------- 280 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK--------------------FDETI---------------- 280 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc--------------------CCHHH----------------
Confidence 679999999999999999999999999999987531100 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCC-eEEEEEecC-cEEecC
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENG-QCYAGD 234 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g-~~i~ad 234 (328)
...+.+.|.+ .+. .++.+.+|.+++.+++ ++.+.+.++ +++++|
T Consensus 281 --------------------------------~~~l~~~L~~-~GV-~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD 326 (561)
T PTZ00058 281 --------------------------------INELENDMKK-NNI-NIITHANVEEIEKVKEKNLTIYLSDGRKYEHFD 326 (561)
T ss_pred --------------------------------HHHHHHHHHH-CCC-EEEeCCEEEEEEecCCCcEEEEECCCCEEEECC
Confidence 0112333322 233 3777899999986543 466555454 579999
Q ss_pred EEEEccCCCchh
Q 020277 235 LLVGADGIWSKV 246 (328)
Q Consensus 235 ~VV~AdG~~S~v 246 (328)
.||.|.|.....
T Consensus 327 ~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 327 YVIYCVGRSPNT 338 (561)
T ss_pred EEEECcCCCCCc
Confidence 999999987554
No 285
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.89 E-value=0.00012 Score=71.84 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI 113 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~ 113 (328)
...||+|||+|.|||.||..++..|.+|.|+|+.....
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 46799999999999999999999999999999986543
No 286
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=0.00022 Score=68.93 Aligned_cols=101 Identities=29% Similarity=0.349 Sum_probs=69.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+... + .+..++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------~-----------~~d~~~----------- 212 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------P-----------LEDPEV----------- 212 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------c-----------chhHHH-----------
Confidence 45799999999999999999999999999999875311 0 000000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCC-eEEEEEecC--cEEe
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENG--QCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--~~i~ 232 (328)
...+.+.|.+. ..+++++++.+++.+++ .+++++.++ .+++
T Consensus 213 ---------------------------------~~~~~~~l~~~---I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~ 256 (460)
T PRK06292 213 ---------------------------------SKQAQKILSKE---FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIE 256 (460)
T ss_pred ---------------------------------HHHHHHHHhhc---cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEE
Confidence 01122333322 34778899999986654 455544344 4799
Q ss_pred cCEEEEccCCCchhh
Q 020277 233 GDLLVGADGIWSKVR 247 (328)
Q Consensus 233 ad~VV~AdG~~S~vr 247 (328)
+|.||.|.|......
T Consensus 257 ~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 257 ADYVLVATGRRPNTD 271 (460)
T ss_pred eCEEEEccCCccCCC
Confidence 999999999876543
No 287
>PLN02268 probable polyamine oxidase
Probab=97.86 E-value=1.6e-05 Score=76.10 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=35.7
Q ss_pred eEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCC
Q 020277 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIW 243 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~ 243 (328)
.++++++|++|..++++++|++.+|+++.||.||.|.-..
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~ 251 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLG 251 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHH
Confidence 4889999999999889999999899899999999997543
No 288
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.86 E-value=7.8e-05 Score=69.81 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
..++|+|||||.+|+.+|..|.++- .++|++|+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4679999999999999999999974 89999999975
No 289
>PRK13748 putative mercuric reductase; Provisional
Probab=97.86 E-value=0.00022 Score=70.64 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++... . .. ..+ .+
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~-l--~~-------~d~-----------~~--------------- 312 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLGSKVTILARSTL-F--FR-------EDP-----------AI--------------- 312 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc-c--cc-------cCH-----------HH---------------
Confidence 357999999999999999999999999999987521 0 00 000 00
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCE
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~ 235 (328)
...+.+.|.+ .+. .++.+++|++++.+++.+.+.+.++ ++.+|.
T Consensus 313 ---------------------------------~~~l~~~l~~-~gI-~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~ 356 (561)
T PRK13748 313 ---------------------------------GEAVTAAFRA-EGI-EVLEHTQASQVAHVDGEFVLTTGHG-ELRADK 356 (561)
T ss_pred ---------------------------------HHHHHHHHHH-CCC-EEEcCCEEEEEEecCCEEEEEecCC-eEEeCE
Confidence 0112223322 233 3777899999987777776666555 699999
Q ss_pred EEEccCCCchh
Q 020277 236 LVGADGIWSKV 246 (328)
Q Consensus 236 VV~AdG~~S~v 246 (328)
||.|.|.....
T Consensus 357 vi~a~G~~pn~ 367 (561)
T PRK13748 357 LLVATGRAPNT 367 (561)
T ss_pred EEEccCCCcCC
Confidence 99999987654
No 290
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.85 E-value=1.7e-05 Score=76.52 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCc
Q 020277 194 QILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 244 (328)
Q Consensus 194 ~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S 244 (328)
+.|.+.++...++++++|+.|+.++++|++++.+|++++||.||.|.-...
T Consensus 229 ~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 229 EEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred HHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence 334444443458899999999998888999888888899999999988653
No 291
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=7.5e-05 Score=76.70 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred eEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCch
Q 020277 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
.++.+++|++++.+. .+|.+.+|.++.+|.||.|+|....
T Consensus 70 ~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCcC
Confidence 377789999997654 3566778889999999999998653
No 292
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.85 E-value=0.00026 Score=67.98 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|+|||+|++|+.+|..|.+.|.+|+++++.+
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 35799999999999999999999999999998764
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.84 E-value=0.00019 Score=67.67 Aligned_cols=99 Identities=26% Similarity=0.330 Sum_probs=70.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
.++++|||+|++|+.+|..|+++|++|+++|+.+... +. +.. + .+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~---~~----~~~-~-----------~~---------------- 180 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG---GQ----LLD-P-----------EV---------------- 180 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc---hh----hhh-H-----------HH----------------
Confidence 5799999999999999999999999999999987521 10 000 0 00
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEE---EEEecCcEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVS---VVLENGQCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~---v~~~~g~~i~a 233 (328)
...+.+.| +..+ ..++++.++.+++...+... +...++..+.+
T Consensus 181 --------------------------------~~~~~~~l-~~~g-i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 181 --------------------------------AEELAELL-EKYG-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred --------------------------------HHHHHHHH-HHCC-cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 01112222 2234 33667899999987766544 57778889999
Q ss_pred CEEEEccCCCc
Q 020277 234 DLLVGADGIWS 244 (328)
Q Consensus 234 d~VV~AdG~~S 244 (328)
|+++.+.|...
T Consensus 227 d~~~~~~g~~p 237 (415)
T COG0446 227 DLVIIGPGERP 237 (415)
T ss_pred eEEEEeecccc
Confidence 99999999876
No 294
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.84 E-value=0.00021 Score=69.47 Aligned_cols=99 Identities=20% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
+++++|||||+.|+.+|..|++.|.+|+|+++. ...+. ++..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~--------------------~d~~~---------------- 222 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG--------------------FDQDC---------------- 222 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc--------------------cCHHH----------------
Confidence 468999999999999999999999999999864 21100 00010
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCCeEEEEEecC---cEEec
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 233 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~i~a 233 (328)
+..+.+.|.+ .+. .+++++.+++++..++.+.+++.++ +++.+
T Consensus 223 --------------------------------~~~l~~~L~~-~gV-~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~ 268 (484)
T TIGR01438 223 --------------------------------ANKVGEHMEE-HGV-KFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEY 268 (484)
T ss_pred --------------------------------HHHHHHHHHH-cCC-EEEeCceEEEEEEcCCeEEEEEecCCcceEEEe
Confidence 0112333322 233 3777888888887666667777665 37999
Q ss_pred CEEEEccCCCchh
Q 020277 234 DLLVGADGIWSKV 246 (328)
Q Consensus 234 d~VV~AdG~~S~v 246 (328)
|.||.|.|.....
T Consensus 269 D~vl~a~G~~pn~ 281 (484)
T TIGR01438 269 DTVLLAIGRDACT 281 (484)
T ss_pred CEEEEEecCCcCC
Confidence 9999999987554
No 295
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.81 E-value=0.00027 Score=70.84 Aligned_cols=35 Identities=31% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+++|+|||||+.|+..|..|++.|.+|+++|+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 46899999999999999999999999999999764
No 296
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.80 E-value=0.00023 Score=69.73 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 46799999999999999999999999999998664
No 297
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.79 E-value=2e-05 Score=77.00 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcC--CceEecCCeEEEEEEeCCe-EEEEEecCcEEecCEEEEccCCCchhhhhh
Q 020277 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
..+.+.|.+.+. ...++++++|++|..++++ +.|++.+|++++||.||.|.+.+......+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 345555555431 2348889999999987766 467788888999999999999877766544
No 298
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.78 E-value=2.6e-05 Score=76.02 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcC--CceEecCCeEEEEEEeCCeE-EEEEecCcEEecCEEEEccCCCchhhhhh
Q 020277 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
..+.+.|.+.+. ...++++++|++|..+++++ .|++.+|++++||.||.|.|.+..+++.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 345555555431 23488899999998776654 47777888999999999999998887655
No 299
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.6e-05 Score=63.32 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=70.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccC-CCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..+|+|||+|||+-.+|+++++.-++.+|||..-...-. .|+ +.-.. + -+.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQ----LtTTT---------------~--------veNf 60 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQ----LTTTT---------------D--------VENF 60 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCce----eeeee---------------c--------cccC
Confidence 348999999999999999999999999999986431111 111 00000 0 0111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEEEEEecCcEEe
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (328)
. |+| -.+.-.+|.+.+.++. |.. +. .-.|.++.....-+++.+ +.+.+.
T Consensus 61 P-----------------------GFP--dgi~G~~l~d~mrkqs~r~Gt~-i~-tEtVskv~~sskpF~l~t-d~~~v~ 112 (322)
T KOG0404|consen 61 P-----------------------GFP--DGITGPELMDKMRKQSERFGTE-II-TETVSKVDLSSKPFKLWT-DARPVT 112 (322)
T ss_pred C-----------------------CCC--cccccHHHHHHHHHHHHhhcce-ee-eeehhhccccCCCeEEEe-cCCcee
Confidence 1 222 1333455666665543 433 22 356677766666666654 666899
Q ss_pred cCEEEEccCCCc
Q 020277 233 GDLLVGADGIWS 244 (328)
Q Consensus 233 ad~VV~AdG~~S 244 (328)
||.||.|+|+..
T Consensus 113 ~~avI~atGAsA 124 (322)
T KOG0404|consen 113 ADAVILATGASA 124 (322)
T ss_pred eeeEEEecccce
Confidence 999999999743
No 300
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.77 E-value=2.6e-05 Score=75.15 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=42.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCC-------C-ccccc----eeechhHHHHHHhcC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGE-------G-QYRGP----IQIQSNALAALEAID 137 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~-------g-~~~~~----~~l~~~~~~~l~~l~ 137 (328)
+|+|||||++||++|+.|+++|++|+|+|+.+...... | ....+ ....|+..++++++|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg 71 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELN 71 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcC
Confidence 58999999999999999999999999999986421100 0 00011 233578888888884
No 301
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00087 Score=59.35 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-------CeEEEEccCCccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKG-------FEVLVFEKDMSAI 113 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g-------~~v~~~~~~~~~~ 113 (328)
+..+|+|||+|..||+.|+.+.+.+ .+|+|+...+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 3468999999999999998888744 5788887765543
No 302
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.71 E-value=3.9e-05 Score=74.16 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 589999999999999999999999999999864
No 303
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00015 Score=67.98 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=33.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...++|+|||||-||..||...+|.|.+.+++..+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 4678999999999999999999999999999987643
No 304
>PLN02546 glutathione reductase
Probab=97.68 E-value=0.00073 Score=66.66 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=68.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
..++|+|||||+.|+..|..|++.|.+|+|+++.+..... ++..+
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~--------------------~d~~~--------------- 295 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG--------------------FDEEV--------------- 295 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc--------------------cCHHH---------------
Confidence 4579999999999999999999999999999987531100 00000
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeC-CeEEEEEecCcEEecC
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG-DKVSVVLENGQCYAGD 234 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v~v~~~~g~~i~ad 234 (328)
+..+.+.|.+ .+ ..++.++++++++.++ +.+.+.+.++....+|
T Consensus 296 ---------------------------------~~~l~~~L~~-~G-V~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D 340 (558)
T PLN02546 296 ---------------------------------RDFVAEQMSL-RG-IEFHTEESPQAIIKSADGSLSLKTNKGTVEGFS 340 (558)
T ss_pred ---------------------------------HHHHHHHHHH-CC-cEEEeCCEEEEEEEcCCCEEEEEECCeEEEecC
Confidence 0112233322 23 3377789999997643 4455655555445589
Q ss_pred EEEEccCCCchhh
Q 020277 235 LLVGADGIWSKVR 247 (328)
Q Consensus 235 ~VV~AdG~~S~vr 247 (328)
.||.|.|......
T Consensus 341 ~Viva~G~~Pnt~ 353 (558)
T PLN02546 341 HVMFATGRKPNTK 353 (558)
T ss_pred EEEEeeccccCCC
Confidence 9999999887653
No 305
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.67 E-value=0.00016 Score=69.66 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
++||+|||+||+|..+|.. ..|.+|.++|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5899999999999988654 4699999999864
No 306
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.67 E-value=6.3e-05 Score=73.31 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~ 111 (328)
...++|+|||||++||+||..|++. |++|+|+|+.+.
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 3468999999999999999999995 689999999875
No 307
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.66 E-value=0.00058 Score=65.25 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=30.4
Q ss_pred cCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCc
Q 020277 200 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 244 (328)
Q Consensus 200 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S 244 (328)
.+.. ++.+++|++++. +. +.+++|+++.+|+||.|.|...
T Consensus 241 ~gV~-v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 241 LGVD-IRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CCCE-EEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCCC
Confidence 3433 667889988854 33 5578899999999999999654
No 308
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.66 E-value=5.5e-05 Score=70.93 Aligned_cols=37 Identities=38% Similarity=0.628 Sum_probs=34.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...++++|||||++|++||+.|+..|++|+++|+.+.
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3467999999999999999999999999999999975
No 309
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.65 E-value=5.9e-05 Score=70.51 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 589999999999999999999999999999964
No 310
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=0.00043 Score=66.67 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=27.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|++|||+||+|..+|.. ..|.+|.|+|+..
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 799999999999988865 4599999999863
No 311
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.63 E-value=4.3e-05 Score=68.05 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CC-eEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~-g~-~v~~~~~~~~ 111 (328)
..+..+|+|||||-+|+..|..+.++ |. +|-|+|....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 34678999999999999999998885 44 7888887754
No 312
>PLN02612 phytoene desaturase
Probab=97.62 E-value=7.6e-05 Score=73.88 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=35.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+..+++|+|||+|++||++|+.|+++|++|+|+|+...
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~ 127 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDV 127 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 455678999999999999999999999999999999754
No 313
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=9.4e-05 Score=68.87 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+..+++|+|||+|++|+.+|..|++.|++|+++|+.+.
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 44578999999999999999999999999999999754
No 314
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.60 E-value=6.4e-05 Score=72.86 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999999999999999999999999999865
No 315
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.60 E-value=0.00021 Score=67.93 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=44.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHh
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEA 135 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~ 135 (328)
...||+|||||..|.-+|+..+-+|++|.++|+++.. +|.++.+-.+-..+++.|++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~---SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA---SGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEeccccc---CCccccchhhhcccHHHHHH
Confidence 4589999999999999999999999999999998763 44444444555666666543
No 316
>PRK10262 thioredoxin reductase; Provisional
Probab=97.58 E-value=0.001 Score=60.98 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 46899999999999999999999999999999875
No 317
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.55 E-value=0.0019 Score=63.36 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=51.2
Q ss_pred EEecHHHHHHHHHHhc---CCceEecCCeEEEEEEeCCeEE-EEEe---cC--cEEecCEEEEccCCCchhhhhhcCCCC
Q 020277 185 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLVGADGIWSKVRKNLFGPQE 255 (328)
Q Consensus 185 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~i~ad~VV~AdG~~S~vr~~~~~~~~ 255 (328)
..++...+...|...+ |. .++.+++|++++.+++++. +++. +| .+++|+.||.|.|.|+.--..+.+...
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga-~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 201 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGA-RIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI 201 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCC-EEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC
Confidence 4678888877776654 43 4777899999998777653 4442 34 379999999999999876554544444
Q ss_pred ceE
Q 020277 256 AIF 258 (328)
Q Consensus 256 ~~~ 258 (328)
+..
T Consensus 202 ~i~ 204 (516)
T TIGR03377 202 RMF 204 (516)
T ss_pred cee
Confidence 433
No 318
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.54 E-value=0.0011 Score=59.69 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||+|+.|+.+|..|++.+.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 45799999999999999999999999999998864
No 319
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.51 E-value=0.0007 Score=63.37 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=37.2
Q ss_pred cCCceEecCCeEEEEEEeCCe-EEEEEecCcEEecCEEEEccCCCch
Q 020277 200 VGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 200 ~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
+|. .++++++|.+++..++. ..+.+++|.++.+|.||.|-|..+.
T Consensus 186 ~G~-ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 186 LGG-EIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred cCc-EEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 353 48889999999987775 4577889999999999999998763
No 320
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.49 E-value=0.0011 Score=65.10 Aligned_cols=35 Identities=31% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||||..|+.+|..|+..+.+|+++++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 46899999999999999999999999999998774
No 321
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.45 E-value=0.00078 Score=61.67 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+||+|||+||.|-.||...++.|++..++|++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 579999999999999999999999999999999754
No 322
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.44 E-value=0.00059 Score=57.53 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCcc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSA 112 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~~ 112 (328)
..||+|||+|-+||++|+..+++ ..+|.|+|.+-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 46899999999999999999965 5799999998654
No 323
>PLN02676 polyamine oxidase
Probab=97.42 E-value=0.00019 Score=69.72 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcC--------CceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCch
Q 020277 189 RMTLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 245 (328)
Q Consensus 189 r~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~ 245 (328)
-..|.+.|.+.+. ...|+++++|++|..++++|+|++.+|++++||.||.|......
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 3455666666541 24589999999999999999999999999999999999986543
No 324
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.41 E-value=0.00023 Score=67.61 Aligned_cols=34 Identities=44% Similarity=0.656 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999874
No 325
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.39 E-value=0.00016 Score=65.54 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~ 111 (328)
+|++|||+|++|..+|..|++.| .+|.|+|++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 58999999999999999999997 69999999854
No 326
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00029 Score=63.17 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
+.+|+|||||.||++||+.|+++|.++.|+-++...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 579999999999999999999999999999887653
No 327
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.34 E-value=3.1e-05 Score=72.76 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=34.9
Q ss_pred cCCCCCccccccCCCCCCccCCCCCcccccCccccccccc
Q 020277 7 YNSVNLSTTVFSRTHFPVPVYKHSCIDFSRYDHCINYKFR 46 (328)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~k~~~g~~~~i~~c~~c~~~~~~ 46 (328)
.+-+.+...+++||+||+|+++|+.++|++|++||++|..
T Consensus 329 ~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~~C~~ 368 (382)
T cd02931 329 ADMISLGRPLLADPDVVNKIRRGRFKNIRPCISCHDGCLG 368 (382)
T ss_pred CCeeeechHhHhCccHHHHHHcCCcccCcCChhhHHHHhh
Confidence 4556678899999999999999999999999999986654
No 328
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.33 E-value=0.00097 Score=62.57 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=33.7
Q ss_pred HhcCCceEecCCeEEEEEEeCCeEEEEEecCc-EEecCEEEEccCCC-chhhhh
Q 020277 198 KAVGDEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLVGADGIW-SKVRKN 249 (328)
Q Consensus 198 ~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~i~ad~VV~AdG~~-S~vr~~ 249 (328)
+..|.. ++.++.|++++. ++++ +++|+ +|.++.+|=|.|.. |++-+.
T Consensus 220 ~~~GV~-v~l~~~Vt~v~~--~~v~--~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 220 EKLGVE-VLLGTPVTEVTP--DGVT--LKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred HHCCCE-EEcCCceEEECC--CcEE--EccCCeeEecCEEEEcCCCcCChhhhh
Confidence 345655 778999999954 4444 45666 59999999999987 444444
No 329
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.32 E-value=0.00045 Score=67.57 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCcccc-----ceeechhHHHHHHh
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG-----PIQIQSNALAALEA 135 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~-----~~~l~~~~~~~l~~ 135 (328)
+||+|||+||+|+.+|..|++.|++|.++|++.... +...+ .+.++.....+|+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~ 60 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS---FLKIGAHKKNEIEYQKDIDKFVNV 60 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC---CCcccccccccccccccHHHHHHH
Confidence 589999999999999999999999999999987642 22212 24555556655544
No 330
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.30 E-value=0.0008 Score=66.45 Aligned_cols=36 Identities=36% Similarity=0.442 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.++.+|||||.-||.+|..|...|++|+|++-.+.
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~ 179 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT 179 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence 345689999999999999999999999999987653
No 331
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.26 E-value=0.00035 Score=66.89 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.+||+|||+|.+|+.+|..|++.|.+|.++|++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 468999999999999999999999999999999864
No 332
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.24 E-value=3.3e-05 Score=71.91 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=34.5
Q ss_pred cCCCCCccccccCCCCCCccCCCCCcccccCccccccccc
Q 020277 7 YNSVNLSTTVFSRTHFPVPVYKHSCIDFSRYDHCINYKFR 46 (328)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~k~~~g~~~~i~~c~~c~~~~~~ 46 (328)
.+-+.+...+++||+||+|+++|+.++|++|++||++|..
T Consensus 300 ~D~V~~gR~~l~dP~~~~k~~~g~~~~i~~Ci~cn~~C~~ 339 (353)
T cd02930 300 ADMVSMARPFLADPDFVAKAAAGRADEINTCIACNQACLD 339 (353)
T ss_pred CChhHhhHHHHHCccHHHHHHhCCcccCcCchhhHHHHHH
Confidence 4455677889999999999999999999999999985543
No 333
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.24 E-value=0.00037 Score=64.59 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCe--EEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFE--VLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~--v~~~~~~~~ 111 (328)
....++|+|+|||++||++|++|++++-+ ++|||+.+.
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 34678999999999999999999999875 466999864
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.23 E-value=0.006 Score=58.79 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46899999999999999999999999999999875
No 335
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.17 E-value=0.0035 Score=59.11 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhccccccccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~~ 156 (328)
...|+++|+|..|+.+|..|...+++||++++.+..... + +...+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~--------------------l---f~~~i------------ 257 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR--------------------L---FGPSI------------ 257 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh--------------------h---hhHHH------------
Confidence 678999999999999999999999999999988643211 0 00000
Q ss_pred ccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeC--CeEEEEEecCcEEecC
Q 020277 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGD 234 (328)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~ad 234 (328)
+..+..+|.+ -+. .+..++.+.+++.+. ....|.+.||.++.||
T Consensus 258 --------------------------------~~~~~~y~e~-kgV-k~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 258 --------------------------------GQFYEDYYEN-KGV-KFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred --------------------------------HHHHHHHHHh-cCe-EEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1112233322 233 366788888888765 3356889999999999
Q ss_pred EEEEccCCCchh
Q 020277 235 LLVGADGIWSKV 246 (328)
Q Consensus 235 ~VV~AdG~~S~v 246 (328)
+||...|+.+.+
T Consensus 304 lvv~GiG~~p~t 315 (478)
T KOG1336|consen 304 LVVVGIGIKPNT 315 (478)
T ss_pred eEEEeecccccc
Confidence 999999987643
No 336
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.16 E-value=0.0041 Score=60.03 Aligned_cols=35 Identities=31% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
..++|+|||+|..|+.+|..|++.|. +|+++++..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 56899999999999999999999998 899998864
No 337
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.15 E-value=0.0071 Score=56.45 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=28.6
Q ss_pred EecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCc
Q 020277 205 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 244 (328)
Q Consensus 205 i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S 244 (328)
++.++++++++. + .+.+.+|+++.+|.||.|.|...
T Consensus 208 v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 208 VHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred EEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 666888888853 3 45667888999999999999765
No 338
>PLN03000 amine oxidase
Probab=97.15 E-value=0.00057 Score=69.78 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+.++|+|||||++||.+|..|++.|++|+|+|+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 3468999999999999999999999999999999754
No 339
>PRK02106 choline dehydrogenase; Validated
Probab=97.10 E-value=0.00068 Score=67.18 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHH-CCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKR-KGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~-~g~~v~~~~~~~ 110 (328)
..+|++|||+|++|+.+|..|++ .|++|.|+|+++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45799999999999999999999 799999999995
No 340
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.09 E-value=0.00075 Score=63.44 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||||.|||+||..|-..|. .|+|+|....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 34589999999999999999997765 8999999864
No 341
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.05 E-value=0.0052 Score=57.21 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~ 110 (328)
..++|+|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 367999999999999999999999997 99998764
No 342
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.016 Score=52.47 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...+|.+|||||-+||+||..++..|.+|.++|--.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P 53 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP 53 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence 4578999999999999999999999999999997544
No 343
>PLN02976 amine oxidase
Probab=97.01 E-value=0.0012 Score=70.24 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
....++|+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~ 727 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR 727 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence 34568999999999999999999999999999998743
No 344
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.00099 Score=59.69 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|++|||+|.+|+..|..|++.|.+|.|+|+++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 6899999999999999999999999999999864
No 345
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.95 E-value=0.0044 Score=56.91 Aligned_cols=100 Identities=27% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccccccc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~~~~~ 155 (328)
-+++.+|||+|..||..+..-.+.|-+||++|--+. .+. .+..++.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~----i~~--------------------~mD~Eis---------- 255 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ----IGG--------------------VMDGEIS---------- 255 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh----hcc--------------------ccCHHHH----------
Confidence 468999999999999999999999999999998753 110 1111111
Q ss_pred cccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCCceEecCCeEEEEEEeCC-eEEEEEec---C--c
Q 020277 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--Q 229 (328)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~---g--~ 229 (328)
..+++.|.. -+ -.++.+++|+..+.+++ .+.+.+.+ + +
T Consensus 256 ----------------------------------k~~qr~L~k-Qg-ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~ 299 (506)
T KOG1335|consen 256 ----------------------------------KAFQRVLQK-QG-IKFKLGTKVTSATRNGDGPVEIEVENAKTGKKE 299 (506)
T ss_pred ----------------------------------HHHHHHHHh-cC-ceeEeccEEEEeeccCCCceEEEEEecCCCcee
Confidence 112333333 22 23778999999998877 56666644 2 4
Q ss_pred EEecCEEEEccCCCch
Q 020277 230 CYAGDLLVGADGIWSK 245 (328)
Q Consensus 230 ~i~ad~VV~AdG~~S~ 245 (328)
+++||.+..|.|.+.-
T Consensus 300 tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 300 TLECDVLLVSIGRRPF 315 (506)
T ss_pred EEEeeEEEEEccCccc
Confidence 8999999999997653
No 346
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=96.94 E-value=0.0047 Score=54.79 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=53.3
Q ss_pred cCEEEEccCCCchhhhhhcCCCCceEeeeEEEEEeeccCCCcccccceEEEecCCeEEEEEeCCCCeEEEEEEEeCC
Q 020277 233 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 309 (328)
Q Consensus 233 ad~VV~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~g~~~~~~~~~~~ 309 (328)
|.+.|+|||..|..|+.+. ...+.... .+.|+.-...+.+.....++++++...+++|+++.+.+++.+.++.+
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~S--~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~ 75 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVRS--YFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGP 75 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCceee--eEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCC
Confidence 7899999999999999986 33343333 23344221222333455788899999999999999999998888765
No 347
>PRK12831 putative oxidoreductase; Provisional
Probab=96.93 E-value=0.016 Score=56.02 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..+++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 457899999999999999999999999999998764
No 348
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.001 Score=59.83 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...|-|||||.||..+||+++++|++|.++|..+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 46799999999999999999999999999998754
No 349
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.87 E-value=0.011 Score=58.44 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 46899999999999999999999999999999875
No 350
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.85 E-value=0.002 Score=58.11 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
...+|+|||+|.+||.+|..|+.+|.+|+|+|+....
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 4579999999999999999999999999999997653
No 351
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.80 E-value=0.0019 Score=52.91 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|+|+|||..|.++|..|+++|++|+++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999874
No 352
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0023 Score=58.59 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--CCeEEEEccCCccc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAI 113 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~--g~~v~~~~~~~~~~ 113 (328)
..+|.|||+||||+.+|..|.++ +..|+|+|+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34999999999999999998884 68999999998753
No 353
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.70 E-value=0.026 Score=54.73 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~ 109 (328)
...++|+|||+|..|+-+|..+.+.|. +|++++..
T Consensus 279 ~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 279 AKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 357899999999999999999999886 78866654
No 354
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.69 E-value=0.021 Score=53.05 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=89.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCC-CeEEEEccCCccccCCCccccceeechhHHHHHHhcCchHHHHHHHhcccc-c
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT-G 152 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~l~~~~~~~-~ 152 (328)
....|++.||-||.-|+.|+.|...+ .+...+|+.+...-..| ..+....+++ .+...+.....+. .
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-----mllegstlQv------~FlkDLVTl~~PTs~ 71 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-----MLLEGSTLQV------PFLKDLVTLVDPTSP 71 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-----cccCCccccc------cchhhhccccCCCCc
Confidence 45689999999999999999999976 78999999976433333 3233222221 1111111110000 0
Q ss_pred ccccccccCCCCceEEeecCCchhhhcCCCeEEEecHHHHHHHHHHhcCC-ceEecCCeEEEEEE-eCC-eEE--EEEec
Q 020277 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKD-HGD-KVS--VVLEN 227 (328)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~-~~~-~v~--v~~~~ 227 (328)
..+..+.. ..++ +..|-. .. ...+.|.+..+.+.-+++. ..++++.+|++|.. +.+ ... +++.+
T Consensus 72 ySFLNYL~-~h~R-Ly~Fl~--------~e-~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~ 140 (436)
T COG3486 72 YSFLNYLH-EHGR-LYEFLN--------YE-TFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTAN 140 (436)
T ss_pred hHHHHHHH-Hcch-Hhhhhh--------hh-cccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCC
Confidence 00000000 0001 111100 00 2578888888888666532 45899999997743 222 233 56677
Q ss_pred CcEEecCEEEEccCCCchhhhhh
Q 020277 228 GQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 228 g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
+..++|+-||+..|..-.+-...
T Consensus 141 ~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 141 GTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred CcEEEeeeEEEccCCCcCCChHH
Confidence 78999999999999877665544
No 355
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.68 E-value=0.0016 Score=64.10 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHHCC-CeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~ 110 (328)
|++|||+|.+|+.+|..|++.| ++|.|+|+++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 6899999999999999999998 6999999985
No 356
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.64 E-value=0.0065 Score=58.68 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.++|+|||+|..|+-.|..|+..+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 57899999999999999999999999999998764
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.61 E-value=0.034 Score=56.23 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
..+++|+|||+|..|+.+|..+.+.|. +|+|+.+..
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357899999999999999999999997 699998764
No 358
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.53 E-value=0.015 Score=54.39 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=41.2
Q ss_pred EecHHHHHHHHHHhc--CCceEecCCeEEEEEEeCCeEEEEEecC-cEEecCEEEEccCCCc
Q 020277 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLVGADGIWS 244 (328)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~i~ad~VV~AdG~~S 244 (328)
.-.-.++.+.|..++ ....++++++|++| +++++.+.+.++ .+++||.||+|+|..|
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 334566677776665 23448899999999 344577776543 5799999999999877
No 359
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.52 E-value=0.0078 Score=59.08 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.-++|+|+|||+|..|.-.|..|++...+|++.-|...
T Consensus 180 ~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 180 PFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp GGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred hcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 34679999999999999999999999999999888743
No 360
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0034 Score=61.91 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
...+|++|||+|.+|..+|..|+..|++|.|+|++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 457899999999999999999999999999999984
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0045 Score=60.17 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
++++|+|||+|++|+++|..|+++|++|+++|+.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46789999999999999999999999999999764
No 362
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.44 E-value=0.034 Score=58.89 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
.+++|+|||+|+.|+..|..|++.|. .|+|+|..+
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 46899999999999999999999995 688998764
No 363
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.43 E-value=0.0051 Score=51.56 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=29.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999864
No 364
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.34 E-value=0.042 Score=56.53 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~ 110 (328)
..+++|+|||||..|+-+|..+.+.|.+ |+++++..
T Consensus 568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 568 KFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3568999999999999999999999997 99998864
No 365
>PLN02785 Protein HOTHEAD
Probab=96.21 E-value=0.0055 Score=60.91 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=32.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...+|++|||+|.+|+.+|..|++ +.+|.|+|++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346899999999999999999999 689999999863
No 366
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.0072 Score=58.34 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|+|||.|++|+++|..|+++|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 367
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.11 E-value=0.05 Score=57.14 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|||||..|+-+|..+.+.|.+|+++.+..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 57899999999999999999999999999998764
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.06 E-value=0.0079 Score=50.63 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=27.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||.|-.||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998854
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.01 Score=57.11 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+.++|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999999999999999999999874
No 370
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.00 E-value=0.0087 Score=55.70 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
+|+|+|+||.||.++..+...|. +|++.|..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 79999999999999888888896 6777777754
No 371
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.98 E-value=0.0071 Score=56.69 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=40.1
Q ss_pred eEecCCeEEEEEEeCCeEE-EEEecCcEEecCEEEEccCCCchhhhhhc
Q 020277 204 IILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKVRKNLF 251 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~ad~VV~AdG~~S~vr~~~~ 251 (328)
.|.+...|++|..+++.+. |.++||.+++++.||--.+.|-+.-+.+-
T Consensus 280 eI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 280 EIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP 328 (561)
T ss_pred eeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC
Confidence 3788999999998887654 88999999999999998898877766553
No 372
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.95 E-value=0.0078 Score=45.49 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
++++|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5789999999999999999999999999999876
No 373
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.91 E-value=0.016 Score=49.65 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
++++|+|||||.+|...+..|.+.|.+|+|++...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 56899999999999999999999999999998753
No 374
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.90 E-value=0.016 Score=47.38 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFE 107 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~ 107 (328)
-++++|+|||||..|..-|..|.+.|++|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 467899999999999999999999999999995
No 375
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.86 E-value=0.031 Score=52.03 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCC
Q 020277 201 GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIW 243 (328)
Q Consensus 201 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~ 243 (328)
+.+.++-+..|.++......+.+.+.||.+++.|+||.|.|-.
T Consensus 406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence 3444777888999988888899999999999999999999954
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.012 Score=51.27 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
++++|||+|..|...|..|.+.|+.|+++|+.+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 47999999999999999999999999999998653
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.016 Score=53.05 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-++|+|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999999864
No 378
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.80 E-value=0.073 Score=49.82 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=30.2
Q ss_pred EecCCeEEEEEEeCCeEEEEEecC--cEEecCEEEEccCCCc--hhhhhh
Q 020277 205 ILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLVGADGIWS--KVRKNL 250 (328)
Q Consensus 205 i~~~~~v~~i~~~~~~v~v~~~~g--~~i~ad~VV~AdG~~S--~vr~~~ 250 (328)
++.++.|.+++ +..+.+...+| ++|..-++|-|+|... .++..+
T Consensus 290 ~~~~t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 290 LDTGTMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred eecccEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHh
Confidence 66788888874 34455555566 4789999999999754 334444
No 379
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.79 E-value=0.11 Score=54.41 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-C-CeEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK-G-FEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~-g-~~v~~~~~~~ 110 (328)
..+++|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 666 ~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 666 KLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 3478999999999999999998887 5 3899998875
No 380
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.73 E-value=0.013 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999999854
No 381
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.64 E-value=0.02 Score=46.17 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 80 v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
|+|+|+|-.|...|+.|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998874
No 382
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.57 E-value=0.024 Score=46.88 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+.+|+|+|+|.+|+.||..|...|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45899999999999999999999999999999874
No 383
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.55 E-value=0.15 Score=53.65 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CC-eEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~-g~-~v~~~~~~~ 110 (328)
..+++|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus 664 ~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 664 PLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 3578999999999999999998886 86 799998875
No 384
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.52 E-value=0.17 Score=49.12 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
..++|+|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 46899999999999999999999996 7999998753
No 385
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.50 E-value=0.056 Score=51.19 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=32.8
Q ss_pred cCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCC
Q 020277 200 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 242 (328)
Q Consensus 200 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~ 242 (328)
.+.+ +++++.|++++.... ++.+.+|+++..+.+|+|+|.
T Consensus 140 ~gIe-~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 140 KGIE-LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred cCce-EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 3444 566899999977654 577899999999999999998
No 386
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.50 E-value=0.02 Score=51.78 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|+|||+|..|...|..|++.|++|+++|.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 387
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.49 E-value=0.027 Score=48.08 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
-++++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 35789999999999999999999999999999754
No 388
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.018 Score=52.07 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999999854
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.48 E-value=0.15 Score=51.58 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
...++|+|||+|..|+-+|..+.+.|. +|+++.+..
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 356899999999999999999999997 699988764
No 390
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.47 E-value=0.022 Score=48.19 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.++++|+|||+|..+.-+|..|++.|.+|+++-|++
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 356999999999999999999999999999998875
No 391
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.46 E-value=0.027 Score=51.56 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
...+|+|||+|-.|...|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998864
No 392
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.023 Score=51.31 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999999865
No 393
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.42 E-value=0.19 Score=48.96 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...++|+|||||..|+-+|..+.+.|. .|+++|..+.
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 457899999999999999888888875 7999987653
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.029 Score=50.76 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-++|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998754
No 395
>PRK13984 putative oxidoreductase; Provisional
Probab=95.33 E-value=0.21 Score=50.04 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC------eEEEEc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF------EVLVFE 107 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~------~v~~~~ 107 (328)
.+++|+|||||..|+-+|..|++.|. +|+++.
T Consensus 417 ~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 417 IPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 35899999999999999999998753 577753
No 396
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.27 E-value=0.039 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~ 110 (328)
+.++|+|||+|-+|.+++..|+..|.+ ++|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 578999999999999999999999986 99998864
No 397
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.026 Score=51.05 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998864
No 398
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.05 E-value=0.032 Score=54.26 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+.+|+|+|+|++|+.++..+...|.+|+++|.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999999999999999999999999998864
No 399
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.05 E-value=0.037 Score=52.38 Aligned_cols=37 Identities=30% Similarity=0.176 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+++|+|+|+|+.|+.+|..+...|.+|+++|..+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 3578999999999999999999999999999998754
No 400
>PRK04148 hypothetical protein; Provisional
Probab=94.95 E-value=0.032 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.++|++||.| .|...|..|++.|++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 45789999999 999899999999999999998864
No 401
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.80 E-value=0.04 Score=50.00 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEcc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~ 108 (328)
+|+|+|+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999988
No 402
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.80 E-value=0.043 Score=49.73 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|+|||+|..|...|..|++.|++|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.79 E-value=0.047 Score=51.17 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
...+|+|+|+|.+|+.+|..|.+.|.+|+++|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45789999999999999999999999999999874
No 404
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.78 E-value=0.043 Score=50.02 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+|+|+|+|..|...|..|++.|++|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 579999999999999999999999999999964
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.75 E-value=0.043 Score=52.33 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=31.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||.|..|+..|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998754
No 406
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.74 E-value=0.042 Score=49.58 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=31.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
..+.+|+|.|+||.||.+-+.+...|. +|.+.|-.+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~ 205 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN 205 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH
Confidence 456799999999999999999999997 6877776643
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.68 E-value=0.057 Score=46.03 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
...+|+|||+|-.|...|..|++.|. +++++|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45789999999999999999999999 699999984
No 408
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.68 E-value=0.042 Score=49.48 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..++++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999998754
No 409
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.67 E-value=0.05 Score=43.15 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
.++|+|+|+|-.|...|..|++.|. +++|+|...-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 5789999999999999999999999 7999999854
No 410
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.57 E-value=0.071 Score=44.07 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCh-HHHHHHHHHHHCCCeEEEEccCC
Q 020277 75 NKKLRILVAGGGI-GGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~-~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
-.+++|+|||+|- +|..+|..|.++|.+|+++.+..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 4689999999996 69999999999999999998763
No 411
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.43 E-value=0.36 Score=45.38 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...++++|+|+|.|++|.++...|-..-++|+|+.....
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 345678999999999999999999988999999987753
No 412
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.38 E-value=0.059 Score=49.17 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|++.|++|+++|++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5799999999999999999999999999998753
No 413
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.34 E-value=0.087 Score=44.91 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.++++|+|+|.|-.|..+|..|.+.|++|+++|.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 357899999999999999999999999999998763
No 414
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.32 E-value=0.072 Score=50.34 Aligned_cols=37 Identities=32% Similarity=0.303 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+++|+|+|.|+.|+.+|..|...|.+|+++|..+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 3578999999999999999999999999999998764
No 415
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=0.056 Score=50.18 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+|.|||.|-.||..|..|+..||+|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998854
No 416
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.29 E-value=0.084 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+++|.|||+|-.|.+.|..|++.|++|+++++...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999998753
No 417
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.27 E-value=0.5 Score=44.19 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=36.2
Q ss_pred ceEecCCeEEEEEEeCCe-EEEEEec-----CcEEecCEEEEccCCCchhhhhh
Q 020277 203 EIILNESNVIDFKDHGDK-VSVVLEN-----GQCYAGDLLVGADGIWSKVRKNL 250 (328)
Q Consensus 203 ~~i~~~~~v~~i~~~~~~-v~v~~~~-----g~~i~ad~VV~AdG~~S~vr~~~ 250 (328)
..+..+++|++++.++++ +.+.+.. ..+++.|.||.|+|.+-.+-..+
T Consensus 293 v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 293 VRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 457889999999988876 6666532 24899999999999985444433
No 418
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.27 E-value=0.073 Score=48.24 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998864
No 419
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.26 E-value=0.062 Score=49.68 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999853
No 420
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.24 E-value=0.082 Score=47.99 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+++|+|+|.|.+|..+|..|.+.|.+|+++++.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 578999999999999999999999999999998853
No 421
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.24 E-value=0.074 Score=43.45 Aligned_cols=36 Identities=33% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+.++|+|-|..|..+|..|+..|.+|+|.|.++.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 578999999999999999999999999999999864
No 422
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.083 Score=51.49 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|+|+|.|..|++++..|.++|++|++.|..+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46789999999999999999999999999999653
No 423
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.083 Score=51.07 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.++|+|+|.|..|+++|..|.++|++|+++|..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 5689999999999999999999999999999875
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.93 E-value=0.11 Score=42.75 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||-|-.|...|..|.++|++|+++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 5899999999999999999999999999998853
No 425
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.09 Score=50.54 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35789999999999999999999999999999764
No 426
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.83 E-value=0.47 Score=45.28 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.1
Q ss_pred eEecCCeEEEEEEeCCeEEEE-EecC--cEEecCEEEEccCCC
Q 020277 204 IILNESNVIDFKDHGDKVSVV-LENG--QCYAGDLLVGADGIW 243 (328)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~-~~~g--~~i~ad~VV~AdG~~ 243 (328)
.++.+++|++++.+++++++. ..+| ..+++|.||.|.|..
T Consensus 275 ~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 275 RIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred EEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 477899999999877777644 3344 358999999999975
No 427
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.82 E-value=0.075 Score=50.61 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|.|||.|..|+..|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998754
No 428
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.80 E-value=0.11 Score=49.48 Aligned_cols=36 Identities=31% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+++|+|+|.|+.|..+|..|...|.+|+++|..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 578999999999999999999999999999998754
No 429
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.76 E-value=0.082 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 80 v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|+|+|+.+.+.|..++..|++|+|+|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999865
No 430
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.75 E-value=0.14 Score=45.93 Aligned_cols=35 Identities=37% Similarity=0.452 Sum_probs=29.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~ 110 (328)
...+|+|+|+|+.|+.++..+...|.+ |+++++.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 467899999999999999988889986 87776553
No 431
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.75 E-value=0.11 Score=46.88 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-.+++|+|+|.|.+|.+.|..|+..|.+|+++++...
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3568999999999999999999999999999998753
No 432
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.73 E-value=0.095 Score=51.19 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-++|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999999865
No 433
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.12 Score=49.84 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..++|+|+|.|.+|+++|..|+++|++|+++|....
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357899999999999999999999999999997654
No 434
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.67 E-value=0.1 Score=47.99 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|.|||+|..|.+.|..|++.|++|+++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 435
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.66 E-value=0.18 Score=47.28 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=39.2
Q ss_pred cCCceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchhh
Q 020277 200 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVR 247 (328)
Q Consensus 200 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr 247 (328)
.+. .++++++|++|+.+++++++++.+|++++||.||.|.......+
T Consensus 222 ~g~-~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 222 LGG-EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HGG-GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred cCc-eeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 344 58999999999999999999999999999999999988765554
No 436
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.61 E-value=0.11 Score=47.91 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999964
No 437
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.60 E-value=0.13 Score=46.93 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
++|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999853
No 438
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.58 E-value=0.094 Score=51.21 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998754
No 439
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.56 E-value=0.13 Score=46.36 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
..++|+|+|+|-+|.++|..|++.|. +++|++|..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 45899999999999999999999998 799999874
No 440
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.54 E-value=0.12 Score=47.38 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999874
No 441
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.53 E-value=0.099 Score=49.90 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
.++|+|+|-|..|+++|..|.++|++|+++|..+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 789999999999999999999999999999977654
No 442
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.53 E-value=0.13 Score=45.84 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||+|-.|..+|..|++.|. +++|+|...-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45789999999999999999999995 8999998754
No 443
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.52 E-value=0.076 Score=49.87 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 87 IGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 87 ~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
++||+||+.|+++|++|+|+|++..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r 25 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDR 25 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCC
Confidence 5899999999999999999999865
No 444
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.51 E-value=0.14 Score=50.21 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.-++|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346899999999999999999999999999999865
No 445
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.50 E-value=0.12 Score=47.12 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
+|.|||+|..|.++|+.|+++| ..+.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 48999998753
No 446
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.48 E-value=0.13 Score=47.68 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
+.++|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999998 899999985
No 447
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.48 E-value=0.13 Score=50.02 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.+.+|+|+|+|++|+.++..+...|.+|+++|.+..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457999999999999999999999999999998753
No 448
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.072 Score=48.59 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
--++|+|+|||||-.|..+|+.|+-.--.||++|=.+.
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 34689999999999999999999965568999997754
No 449
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.39 E-value=0.15 Score=44.07 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
..++++|+|||||.+++.-+..|.+.|.+|+|+-..
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 345789999999999999999999999999999654
No 450
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.37 E-value=0.099 Score=51.44 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCeEEEEccCCcc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 112 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~~~~~ 112 (328)
....+|.+|||||-||...|..|++. -.+|.|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 35679999999999999999999997 5799999998654
No 451
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.34 E-value=0.48 Score=44.45 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=31.3
Q ss_pred ceEecCCeEEEEEEeCCeEEEEEecCcEEecCEEEEccCCCchhh
Q 020277 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVR 247 (328)
Q Consensus 203 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ad~VV~AdG~~S~vr 247 (328)
..++.+++|+++..... ++.+.+| ++..|.+|.|+|.+-...
T Consensus 68 i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 68 IDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred CEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCcccCC
Confidence 34677889999976555 4445666 899999999999876543
No 452
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.33 E-value=0.27 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~ 111 (328)
++|+|||||++||++|+.|+++ |++|+|+|+++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 6899999999999999999999 999999999864
No 453
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.28 E-value=0.17 Score=42.67 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~-g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
+.++++|+|| |..|..+|..|++.|++|+++.|.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4679999997 999999999999999999999776
No 454
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.26 E-value=0.13 Score=49.85 Aligned_cols=35 Identities=14% Similarity=-0.115 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.+++|+|+|.|-.|.++|..|.++|.+|++.|.+.
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 35789999999999999999999999999999753
No 455
>PLN02494 adenosylhomocysteinase
Probab=93.25 E-value=0.15 Score=48.82 Aligned_cols=37 Identities=30% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+++|+|+|.|+.|..+|..+...|.+|+++|..+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3578999999999999999999999999999998764
No 456
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.11 E-value=0.17 Score=43.15 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||+|-.|...|..|++.|. +++++|.+.-
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 46799999999999999999999998 8999999853
No 457
>PLN02676 polyamine oxidase
Probab=93.10 E-value=0.27 Score=47.95 Aligned_cols=36 Identities=19% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
..++|+|||||++||++|..|+++|+ +|+|+|+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 46789999999999999999999998 5999999864
No 458
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.3 Score=40.41 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+.++|+|||||-..+-.|+.|++.+-+|+++-|++.
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence 567999999999999999999999999999988754
No 459
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.06 E-value=1.4 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=31.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
...++|+|||+|..|+-+|..+.+.|. +|+++.+..
T Consensus 449 ~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 449 VEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357899999999999999999889995 799998764
No 460
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=93.01 E-value=0.14 Score=49.03 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~----g~~v~~~~~~~~ 111 (328)
.+++-|||+|+|+|++|..|-|- |-+++|+|+...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 46889999999999999999985 568999999864
No 461
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.00 E-value=0.3 Score=35.32 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCeEEEEcc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEK 108 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~-g~~v~~~~~ 108 (328)
...++++|+|.|-.|..+|..|.+. +.++.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3567899999999999999999998 678999988
No 462
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.96 E-value=0.15 Score=51.97 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..-++|.|||+|..|...|..++..|++|+++|.++.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3457899999999999999999999999999999864
No 463
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.95 E-value=0.17 Score=44.05 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe---EEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE---VLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~---v~~~~~~~ 110 (328)
++++|+|+|+|-+|...|..|.+.|.+ ++++++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 567999999999999999999999975 99999984
No 464
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.90 E-value=2 Score=42.86 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHHhc--CCceEecCCeEEEEEEe-CCeEE-EE---EecCc--EEecCEEEEccCCCchh
Q 020277 190 MTLQQILAKAV--GDEIILNESNVIDFKDH-GDKVS-VV---LENGQ--CYAGDLLVGADGIWSKV 246 (328)
Q Consensus 190 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~---~~~g~--~i~ad~VV~AdG~~S~v 246 (328)
..|.+.|.+.+ ....++.++.++++..+ ++.+. +. ..+|+ .+.|+.||+|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 45666666654 22457789999999875 45554 22 23554 68999999999998864
No 465
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.89 E-value=0.16 Score=51.92 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-++|+|||+|..|...|..+++.|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999999864
No 466
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.84 E-value=0.27 Score=45.15 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 74 ~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..++++|+|+|.|-.|..+...+...|.+|+.+++++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~ 201 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE 201 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 34578999999997777777777779999999999865
No 467
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.81 E-value=0.16 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|.|||.|..|.+.|..|.++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999874
No 468
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.80 E-value=0.22 Score=38.01 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 80 v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
|+|+|.|..|...+..|.+.+.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999999864
No 469
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.75 E-value=0.19 Score=48.78 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|+|+|.|-+|+++|..|.++|++|++.|+..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 45789999999999999999999999999999753
No 470
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.72 E-value=0.2 Score=44.01 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
+..+|+|+|+|-.|..+|..|++.|. +++++|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 45789999999999999999999997 7999998854
No 471
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.71 E-value=0.17 Score=47.47 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~~ 111 (328)
++|+|||+|-.|..+|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 58999999999999999999999 89999999854
No 472
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.68 E-value=0.22 Score=43.86 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
...+++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999997754
No 473
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.63 E-value=0.12 Score=46.42 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-.+-+|+|+|||.+|..+|..+.-.|.+|+++|.+..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 3456899999999999999999999999999999854
No 474
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.63 E-value=0.22 Score=43.87 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
+..+|+|||+|..|..+|..|++.|. +++|+|...-
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 46799999999999999999999998 7999998753
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.58 E-value=0.21 Score=45.56 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CeEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g--~~v~~~~~~~~ 111 (328)
++|+|||+|-+|.++|..|+..| .++.++|+...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 37999999999999999999999 57999998654
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.57 E-value=0.22 Score=47.87 Aligned_cols=37 Identities=30% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-.+++|+|||.|..|..+|..|...|.+|+++|+.+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4688999999999999999999999999999988754
No 477
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.57 E-value=0.22 Score=42.83 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||+|-.|...|..|++.|. +++++|.+.-
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 46789999999999999999999998 5999999853
No 478
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.55 E-value=0.24 Score=45.55 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
.++|+|||+|-.|...|..++..|+ ++.|+|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 8999998764
No 479
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.52 E-value=0.28 Score=44.90 Aligned_cols=36 Identities=19% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC--eEEEEccCC
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~--~v~~~~~~~ 110 (328)
+.+.+|+|||+|-+|.++|+.|+..|+ ++.|+|...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 356799999999999999999999998 799999864
No 480
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.47 E-value=0.5 Score=46.08 Aligned_cols=35 Identities=43% Similarity=0.609 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCeEEEEccCCcc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~~ 112 (328)
+||+|||+|++||++|..|+++|++|+|+|++..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999998653
No 481
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.40 E-value=0.22 Score=46.09 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
...+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45789999999999999999999999 899999974
No 482
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.40 E-value=0.19 Score=48.54 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHH-HHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLV-FALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~-~a~~l~~~g~~v~~~~~~~ 110 (328)
..++|.|+|.|-+|++ +|..|.++|++|++.|...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4568999999999999 6999999999999999764
No 483
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.36 E-value=0.24 Score=43.07 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||+|-.|...|..|++.|. +++|+|...-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 45799999999999999999999998 7999998753
No 484
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.34 E-value=0.23 Score=42.88 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.2
Q ss_pred eEEEEC-CChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 79 RILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G-~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
+|.||| +|..|.+.|..|++.|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998764
No 485
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.32 E-value=0.21 Score=51.16 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=33.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 75 ~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..-++|.|||+|..|...|..++..|++|+++|..+.
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3457899999999999999999999999999999864
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.23 E-value=0.26 Score=44.09 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
..++++|+|+|-+|.+.|..|++.|.+|+++++..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999998764
No 487
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.21 E-value=0.23 Score=47.96 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~ 109 (328)
.+++|+|+|.|..|.++|..|.+ |.+|+++|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 45789999999999999999995 9999999965
No 488
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.19 E-value=0.22 Score=48.74 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCC
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~ 110 (328)
.++|.|+|.|-+|+++|..|.++|++|+++|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 5689999999999999999999999999999754
No 489
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.17 E-value=0.17 Score=43.38 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..+.|.|||+|..|.-.|...+..|+.|+++|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 457899999999999999999999999999999865
No 490
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.16 E-value=0.22 Score=47.56 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
.++|+|||-|-.|+++|..|.++|++|+++|+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 36899999999999999999999999999997653
No 491
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.15 E-value=0.17 Score=45.65 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|.|||.|..|...|..|++.|++|+++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998853
No 492
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.13 E-value=0.26 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 78 ~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
++|+|||+|..|...|..++..|+ +|.++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 9999998643
No 493
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.11 E-value=0.32 Score=39.14 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CeEEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g-~~v~~~~~~~ 110 (328)
+.++|+|+|+|..|...|..|.+.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4678999999999999999999986 7899998874
No 494
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.06 E-value=0.29 Score=39.11 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
+|+|||+|-.|...|..|++.|. +++++|...-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 58999999999999999999998 7999998854
No 495
>PRK08328 hypothetical protein; Provisional
Probab=91.95 E-value=0.28 Score=42.77 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-eEEEEccCCc
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~~ 111 (328)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45789999999999999999999998 7999988754
No 496
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.91 E-value=0.22 Score=47.02 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
+|.|||.|-.|+..|..++. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988885 999999999854
No 497
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.90 E-value=0.28 Score=44.30 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCe-EEEEccCC
Q 020277 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (328)
Q Consensus 76 ~~~~v~i~G~g~~g~~~a~~l~~~g~~-v~~~~~~~ 110 (328)
++++++|+|+|=+|.++|..|++.|.+ |+|+.|..
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 567899999999999999999999996 99998874
No 498
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.87 E-value=0.27 Score=40.89 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-eEEEEccCC
Q 020277 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (328)
Q Consensus 79 ~v~i~G~g~~g~~~a~~l~~~g~-~v~~~~~~~ 110 (328)
+|+|||+|-.|...|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599999985
No 499
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.83 E-value=0.4 Score=39.96 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 73 ~~~~~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
..-.+++|.|||.|-.|...|..|...|.+|+.+++...
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 345689999999999999999999999999999999865
No 500
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.80 E-value=0.24 Score=44.93 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCeEEEEccCCc
Q 020277 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (328)
Q Consensus 77 ~~~v~i~G~g~~g~~~a~~l~~~g~~v~~~~~~~~ 111 (328)
-++|.|||+|..|-..|..++..|++|+++|.+..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 47899999999999999999998899999999854
Done!