BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020278
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21)
Length = 191
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
Query: 5 NQLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEH 64
+ G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH
Sbjct: 1 GHMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEH 60
Query: 65 VIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLL 123
+IRE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L
Sbjct: 61 IIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELK 120
Query: 124 QIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
+ + AKY KE+ + +VN ++ KLSV AP + L EIA+ +N+ +
Sbjct: 121 IVADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 179
Query: 184 D 184
+
Sbjct: 180 E 180
>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212)
Length = 189
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 11 GVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQN 70
G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+IRE
Sbjct: 5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDY 64
Query: 71 ICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQIKNLF 129
+ A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L + +
Sbjct: 65 LVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQL 124
Query: 130 SAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
AKY KE+ + +VN ++ KLSV AP + L EIA+ +N+ ++
Sbjct: 125 CAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGY|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGZ|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|C Chain C, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|D Chain D, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
Length = 193
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 13 FGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNIC 72
F K KT L + I R++ Q K++ +Q R+++AQ L +E A RVE +I +
Sbjct: 8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHI 67
Query: 73 AAYAVLELFCEFLLARVPILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQ 124
+LEL+CE LLARV ++ ++ + EA+ S+I+A ++ +L Q
Sbjct: 68 ELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQ 127
Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
+K+L + K EFV V D V II+K S S P E LKEIA+ +++ +
Sbjct: 128 LKDLMAWKINVEFVNGVIADHID--VPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY- 184
Query: 185 SSNTESELS 193
S E+ LS
Sbjct: 185 -SKLENSLS 192
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 106 VASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAP-- 163
+ + FA P + D K+LF YGK PD + IE L V AP
Sbjct: 21 IPTTAFAGPTKAPTKDGTSYKDLFLELYGKIKDPKNGYFSPDEGIPYHSIETLIVEAPDY 80
Query: 164 ----SSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLGGSKEICGWASFPP 214
+SEA + A NL + S E+ + ++ S E G +S+ P
Sbjct: 81 GHVTTSEAFSYYVWLEAMYGNLTGNWSGVETAWKVMEDWIIPDSTEQPGMSSYNP 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,721,758
Number of Sequences: 62578
Number of extensions: 256663
Number of successful extensions: 620
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 7
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)