BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020278
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1
Length = 364
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
+ G+ + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+I
Sbjct: 1 MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
RE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
+ AKY KE+ + +VN ++ KLSV AP + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
Length = 364
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 113/181 (62%), Gaps = 6/181 (3%)
Query: 7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
+ G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+I
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
RE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 KNLFSAKYGKEF--VLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
+ AKY KE+ + +++ +VN ++ KLSV AP + L EIA+ +N+ +
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQI---GTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 177
Query: 184 D 184
+
Sbjct: 178 E 178
>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1
Length = 362
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
+ G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+I
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
RE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
+ AKY KE+ + +VN ++ KLSV AP + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1
Length = 366
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
+ G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+I
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
RE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 KNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWD 184
+ AKY KE+ + +VN ++ KLSV AP + L EIA+ +N+ ++
Sbjct: 121 ADQLCAKYSKEYG-KLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1
Length = 364
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 7 LFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVI 66
+ G + + +L L I+R+KLL+ K+ Q+ RKEIA +L AG++ ARIRVEH+I
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 67 REQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQI 125
RE + A +LEL+C+ LLAR +++S KE + + E+V+++I+AAPR S++ +L +
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 126 KNLFSAKYGKEF--VLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
+ AKY K + + +++ +VN ++ KLSV AP + L EIA+ +N+ +
Sbjct: 121 ADQLCAKYSKGYGKLCRTNQI---GTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPY 177
Query: 184 D 184
+
Sbjct: 178 E 178
>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3
SV=1
Length = 369
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 16 KCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAY 75
K K L L +SR+++L+NK+ ++ ++ +A+ L+ E ARIRVE +IR++ + +
Sbjct: 12 KLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRDEYLIECF 71
Query: 76 AVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGK 135
++E+ CE L AR+ ++ + E P EM+E++ ++++++ R +P+L QIKN AKYGK
Sbjct: 72 QIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQRIQ-IPELEQIKNQLKAKYGK 130
Query: 136 EFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSN 187
+ + + VN I+ KLS + P + L EIA++ N++W S+
Sbjct: 131 G-LENEANCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDWCGSD 181
>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1
SV=1
Length = 298
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 13 FGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNIC 72
F K KT L + I R++ Q K++ +Q R+++AQ L +E A RVE +I +
Sbjct: 8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHI 67
Query: 73 AAYAVLELFCEFLLARVPILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQ 124
+LEL+CE LLARV ++ ++ + EA+ S+I+A ++ +L Q
Sbjct: 68 ELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQ 127
Query: 125 IKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNW 183
+K+L + K EFV V + V II+K S S P E LKEIA+ +++ +
Sbjct: 128 LKDLMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184
>sp|O74490|IST1_SCHPO Vacuolar protein sorting-associated protein ist1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ist1 PE=3 SV=1
Length = 271
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAA 74
++ + L L SR+++L+ K E +Q R+ +A L++ +A+ R+E +I +
Sbjct: 2 SRLQIQLKLAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKARIEPLIMQDIYIEL 61
Query: 75 YAVLELFCEFLLARVPILESQK-ECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKY 133
+L++ E L R +LE + + ++ ++ AAP+ + +L + + Y
Sbjct: 62 LELLQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAPQLQ-IKELRFVHDFLVKLY 120
Query: 134 GKEFVLAVSELRPDSSVNRTIIEKL 158
GKEF +S+ PD + N T +L
Sbjct: 121 GKEFA-RLSD--PDLATNDTAFYQL 142
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 50 LQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASI 109
++ G ARI ++ IRE+N Y L + + +RV K M V S
Sbjct: 37 IEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKS- 95
Query: 110 IFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARL 169
+ + R DL + Q+ + F ++ L V + ++++N+T ++S P+ + L
Sbjct: 96 MEKSMRNMDLEKITQVMDQFERQFED---LDVQSVYVENAMNQTT----TLSTPADQVDL 148
Query: 170 KVLKEIAQEHNLN 182
++ ++A EH LN
Sbjct: 149 -LISQVADEHGLN 160
>sp|P0AFY1|RSEB_SHIFL Sigma-E factor regulatory protein RseB OS=Shigella flexneri GN=rseB
PE=3 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 234 TPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVS-DFKRATPSQSSDVLERA 292
TPT QG + + P +P + N IE + S + S + RATPS + +L
Sbjct: 223 TPTWLPQGFSEVSSSRRP--LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTG 280
Query: 293 RAAIASAERASAAARTAAELV---------NVKFGS 319
R ++++ R +A EL N+KFG+
Sbjct: 281 RRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316
>sp|P0AFX9|RSEB_ECOLI Sigma-E factor regulatory protein RseB OS=Escherichia coli (strain
K12) GN=rseB PE=1 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 234 TPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVS-DFKRATPSQSSDVLERA 292
TPT QG + + P +P + N IE + S + S + RATPS + +L
Sbjct: 223 TPTWLPQGFSEVSSSRRP--LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTG 280
Query: 293 RAAIASAERASAAARTAAELV---------NVKFGS 319
R ++++ R +A EL N+KFG+
Sbjct: 281 RRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316
>sp|P0AFY0|RSEB_ECO57 Sigma-E factor regulatory protein RseB OS=Escherichia coli O157:H7
GN=rseB PE=3 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 234 TPTKTEQGSQRLQAPNPPSSMPLLSNNEIEQSVKSSNVVPVS-DFKRATPSQSSDVLERA 292
TPT QG + + P +P + N IE + S + S + RATPS + +L
Sbjct: 223 TPTWLPQGFSEVSSSRRP--LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTG 280
Query: 293 RAAIASAERASAAARTAAELV---------NVKFGS 319
R ++++ R +A EL N+KFG+
Sbjct: 281 RRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316
>sp|P24574|GVPC1_HALSA Gas vesicle protein C 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=gvpC1 PE=3 SV=1
Length = 382
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 87 ARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLL-----QIKNLFSA--KYGKEFVL 139
AR ESQ+E + E A I SDL D + ++ N A YG EF
Sbjct: 13 ARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTTDAFHTYGDEFAA 72
Query: 140 AVSELRPDSSVNRTIIEKL 158
V LR D R +I ++
Sbjct: 73 EVDHLRADIDAQRDVIREM 91
>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup211 PE=1 SV=1
Length = 1837
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 116 CSDLPDLLQIKNLFSAKYGKEFVLA----VSELRPDSSVNRTIIEKLSVSAPSSEARLKV 171
CSD L ++N F + + VL ++EL+ D ++ RT+ +L + + RLK
Sbjct: 858 CSDDVRRLTLQNSFDLREHQTLVLQLQSNITELKQDITLQRTVRNQLEIQTTELKERLKF 917
Query: 172 LKE 174
++E
Sbjct: 918 MEE 920
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,645,660
Number of Sequences: 539616
Number of extensions: 4276801
Number of successful extensions: 14117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 14016
Number of HSP's gapped (non-prelim): 158
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)