Query 020278
Match_columns 328
No_of_seqs 136 out of 298
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2027 Spindle pole body prot 100.0 5.4E-59 1.2E-63 458.1 23.5 182 23-204 1-183 (388)
2 PF03398 Ist1: Regulator of Vp 100.0 3.8E-58 8.3E-63 406.3 14.7 165 18-183 1-165 (165)
3 KOG3232 Vacuolar assembly/sort 93.1 2.7 5.8E-05 38.8 12.8 126 45-185 38-169 (203)
4 KOG3230 Vacuolar assembly/sort 65.5 1.3E+02 0.0027 28.7 16.2 125 7-132 3-131 (224)
5 PRK13989 cell division topolog 63.8 15 0.00032 29.8 4.7 46 1-52 1-53 (84)
6 PRK13991 cell division topolog 62.9 23 0.00049 29.0 5.6 46 1-51 1-51 (87)
7 TIGR01215 minE cell division t 61.3 21 0.00046 28.6 5.1 45 1-51 1-50 (81)
8 PF03357 Snf7: Snf7; InterPro 60.1 47 0.001 28.4 7.5 71 19-89 4-74 (171)
9 PF08167 RIX1: rRNA processing 49.5 1.8E+02 0.004 25.5 12.7 128 39-187 23-153 (165)
10 COG1405 SUA7 Transcription ini 47.0 1E+02 0.0022 30.3 8.2 121 67-188 93-234 (285)
11 PF05099 TerB: Tellurite resis 44.1 90 0.002 25.8 6.5 108 93-205 14-133 (140)
12 PRK14136 recX recombination re 43.7 1.8E+02 0.0039 29.1 9.4 125 41-180 177-307 (309)
13 PF12949 HeH: HeH/LEM domain; 43.5 17 0.00036 25.1 1.6 24 170-193 7-30 (35)
14 PF10607 CLTH: CTLH/CRA C-term 43.2 2E+02 0.0043 24.1 10.4 25 41-65 3-27 (145)
15 PF03882 KicB: KicB killing fa 42.9 3.6E+02 0.0079 28.2 11.6 94 16-110 159-257 (440)
16 COG3437 Response regulator con 40.7 3E+02 0.0064 28.2 10.5 90 72-187 187-283 (360)
17 PHA03191 UL14 tegument protein 38.0 59 0.0013 31.2 4.8 51 150-201 99-149 (238)
18 cd05394 RasGAP_RASA2 RASA2 (or 36.1 1.2E+02 0.0026 30.2 7.0 88 75-176 130-226 (313)
19 KOG1656 Protein involved in gl 35.8 2.8E+02 0.0061 26.5 8.9 39 1-41 1-43 (221)
20 PF11985 DUF3486: Protein of u 34.1 1E+02 0.0023 27.5 5.7 80 96-178 8-98 (180)
21 PRK00296 minE cell division to 33.7 72 0.0016 25.9 4.2 45 1-51 1-51 (86)
22 COG1711 DNA replication initia 33.1 1.7E+02 0.0037 28.0 7.1 59 122-189 63-121 (223)
23 PF08542 Rep_fac_C: Replicatio 32.2 1.1E+02 0.0025 23.4 5.0 42 44-87 9-50 (89)
24 PF00570 HRDC: HRDC domain Blo 30.8 24 0.00052 25.9 0.9 63 72-140 2-67 (68)
25 COG0851 MinE Septum formation 30.4 56 0.0012 27.0 3.0 45 1-51 1-51 (88)
26 KOG2808 U5 snRNP-associated RN 24.4 1E+02 0.0022 31.1 4.2 39 96-146 237-275 (341)
27 COG4942 Membrane-bound metallo 23.7 1E+02 0.0022 32.0 4.2 29 285-313 236-264 (420)
28 KOG0795 Chorismate mutase [Ami 23.4 2.9E+02 0.0062 26.7 6.7 91 76-188 119-224 (262)
29 PRK08084 DNA replication initi 21.9 96 0.0021 28.6 3.3 40 149-188 147-192 (235)
30 PRK05260 condesin subunit F; P 21.3 7.2E+02 0.016 26.2 9.6 94 16-110 159-257 (440)
31 PRK13988 cell division topolog 20.9 2.4E+02 0.0051 23.6 5.1 46 1-52 4-54 (97)
32 PF00616 RasGAP: GTPase-activa 20.3 4.9E+02 0.011 22.7 7.4 90 69-177 97-190 (197)
No 1
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-59 Score=458.10 Aligned_cols=182 Identities=56% Similarity=0.912 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhcccCCCCChHH
Q 020278 23 LGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKECPTEM 102 (328)
Q Consensus 23 LaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~~kecP~eL 102 (328)
|+++||++|+|||+++++|+|||||+||++|+.++|||||||||+|||+++||||||+|||||+.||++|+++++||.||
T Consensus 1 l~~~Rl~lLknKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l 80 (388)
T KOG2027|consen 1 LAINRLKLLKNKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDL 80 (388)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 020278 103 REAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLN 182 (328)
Q Consensus 103 kEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~ 182 (328)
+|||+|||||||||+|||||++||++|+.|||++|+..|.+++++++||++||+||++..|+.++|.+||+|||++|||+
T Consensus 81 ~EAVsSlifAA~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~v~ 160 (388)
T KOG2027|consen 81 KEAVSSLIFAAPRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYNVN 160 (388)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHhhhh-hhcccCCCc
Q 020278 183 WDSSNTESELSKK-HEDLLGGSK 204 (328)
Q Consensus 183 w~~~~~e~~~~~~-~~d~~~~~~ 204 (328)
|++++.+....+. +++.+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s 183 (388)
T KOG2027|consen 161 WEPDSLSTSEEKSNHEDLLIDPS 183 (388)
T ss_pred cccCccccccCCCchhhcccccc
Confidence 9999998877766 666665554
No 2
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=100.00 E-value=3.8e-58 Score=406.34 Aligned_cols=165 Identities=57% Similarity=0.912 Sum_probs=154.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhcccCCC
Q 020278 18 KTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILESQKE 97 (328)
Q Consensus 18 Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~~ke 97 (328)
|++||||++||+++|+||.++++++|+|||+||++|+.++||+|||+||+||+++++||+||+|||+|++|+++|+++++
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~ 80 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 020278 98 CPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQ 177 (328)
Q Consensus 98 cP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ 177 (328)
||++++|||+|||||+|||+|+|||+.||++|+.|||++|+..|.+|. +++||++|++||++.+|+.++|.+||+|||+
T Consensus 81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~-~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~ 159 (165)
T PF03398_consen 81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENR-DNGVNPRIVEKLSVKPPSEELVEKYLKEIAK 159 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTT-TTTS-HHHHHHCS-S---CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhc-CCCcCHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 7899999999999999999999999999999
Q ss_pred HcCCCC
Q 020278 178 EHNLNW 183 (328)
Q Consensus 178 ey~V~w 183 (328)
+|||+|
T Consensus 160 e~~i~w 165 (165)
T PF03398_consen 160 EYGIPW 165 (165)
T ss_dssp HCT-SH
T ss_pred HcCCCC
Confidence 999999
No 3
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=2.7 Score=38.83 Aligned_cols=126 Identities=24% Similarity=0.307 Sum_probs=78.0
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhH
Q 020278 45 EIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLEL--FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDL 122 (328)
Q Consensus 45 DIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLEl--yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL 122 (328)
-+-.-|+.|+.+-|||-+|+-||-.|- ++..|-+ -.+-+.+|+.---..+.+...+---|-++=-|- .- =.|
T Consensus 38 K~kkAi~kgN~dvArIyAeNAIRkkne--~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~al-kt---mNL 111 (203)
T KOG3232|consen 38 KLKKAIQKGNMDVARIYAENAIRKKNE--AVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSAL-KT---MNL 111 (203)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---CCH
Confidence 344567899999999999999998874 4444443 456677777554444433322222222221111 11 134
Q ss_pred HHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCCCCC
Q 020278 123 LQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSV----SAPSSEARLKVLKEIAQEHNLNWDS 185 (328)
Q Consensus 123 ~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~----~~Ps~elv~~yL~EIA~ey~V~w~~ 185 (328)
..| .++..||-+.|... -|...++++--. -..+...|..+|.+.|.|+|+++.-
T Consensus 112 eki-s~~MDkFE~qFedl--------dvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq 169 (203)
T KOG3232|consen 112 EKI-SQLMDKFEKQFEDL--------DVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQ 169 (203)
T ss_pred HHH-HHHHHHHHHHhhhh--------hhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhh
Confidence 444 46778999999643 244555555422 2245778999999999999998854
No 4
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.54 E-value=1.3e+02 Score=28.66 Aligned_cols=125 Identities=19% Similarity=0.280 Sum_probs=88.6
Q ss_pred hhcCCCCccc-hHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020278 7 LFNRGVFGAK-CKT---SLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFC 82 (328)
Q Consensus 7 ~f~~~~~~sK-~Kt---~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyC 82 (328)
+|++...+.- |+. .|.-++--|.-=+.|-+.+-|.+-.||=..-++|+.+..+|-+.+++|--+++.=|...-.-.
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi 82 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI 82 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887766532 333 333444333333333344444455677777889999999999999999999999999999999
Q ss_pred HHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHH
Q 020278 83 EFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAK 132 (328)
Q Consensus 83 ElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~K 132 (328)
.-+..|++-+.++...-..++.+-- .+-+-.|-=++|-+..|-..|...
T Consensus 83 qaVSl~iQtlkss~sma~aMkGaTk-am~~MNrqmnlpq~qkIm~eFekQ 131 (224)
T KOG3230|consen 83 QAVSLRIQTLKSSTSMAQAMKGATK-AMAGMNRQMNLPQIQKIMQEFEKQ 131 (224)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhhccChHHHHHHHHHHHHH
Confidence 9999999999886666556655443 344556644999999998877654
No 5
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=63.83 E-value=15 Score=29.83 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=28.5
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHc
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNK-REL------QLQQMRKEIAQFLQA 52 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~K-r~~------~~k~~RrDIA~LL~~ 52 (328)
|+||+.+|++... .-..|..||+++=.. |.. ..-++|+||-+-+..
T Consensus 1 M~l~~~f~~~k~~------Sa~vAKeRLqiiLa~dR~~~~~~p~~l~~lk~dil~VIsK 53 (84)
T PRK13989 1 MSILSFLLGEKKK------TASVAKERLQIIIAHERVGGRQPPDYLPALQKELVAVISK 53 (84)
T ss_pred CchHHHhhcCCCC------cHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999986422 233477888854322 222 456677777665543
No 6
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=62.86 E-value=23 Score=29.03 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=28.6
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKR-----ELQLQQMRKEIAQFLQ 51 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~Kr-----~~~~k~~RrDIA~LL~ 51 (328)
|+||+-+|++.... .-..|..||+++=... -....++|+||-+-+.
T Consensus 1 M~~l~~~f~~k~~~-----Sa~~AKeRLqliLahdR~~~~p~~l~~lk~eil~VIs 51 (87)
T PRK13991 1 MSFLDGLFGRKRDS-----SSELAKQRLLTVLVHDRVKLTPEMMEQMKADLAEVIK 51 (87)
T ss_pred CChHHHhhcCCCCC-----cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 89999999874222 2345888888553332 2345666666655444
No 7
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=61.26 E-value=21 Score=28.61 Aligned_cols=45 Identities=33% Similarity=0.431 Sum_probs=27.2
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHHH-H----HHHHHHHHHHHHHHHH
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNK-R----ELQLQQMRKEIAQFLQ 51 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~K-r----~~~~k~~RrDIA~LL~ 51 (328)
|+||+-+|++... .-..|..||+++=-. | .....++|+||-+-+.
T Consensus 1 M~l~~~f~~~k~~------Sa~~AKeRLq~iL~~dR~~~~p~~l~~mk~dil~VIs 50 (81)
T TIGR01215 1 MSLLEFFKSRKKN------SAEVAKDRLKLILAHDRAQLAPEYLEELRKEILEVIS 50 (81)
T ss_pred CchHHHhhcCCCC------cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8999998876321 234577888855422 2 1345566666665554
No 8
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=60.06 E-value=47 Score=28.39 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=50.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Q 020278 19 TSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARV 89 (328)
Q Consensus 19 t~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~ 89 (328)
..|+.++.+|.--..+-...++.....+-.+++.|+-+.|++-.....+-...++-+.-.-.-.+-+..++
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~i 74 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQI 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888999999999999999999988777776655554443333344444443
No 9
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=49.48 E-value=1.8e+02 Score=25.55 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHH--HHHH-HHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCC
Q 020278 39 LQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAA--YAVL-ELFCEFLLARVPILESQKECPTEMREAVASIIFAAPR 115 (328)
Q Consensus 39 ~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~iea--yEiL-ElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR 115 (328)
+.....-|-.||+.+. +..|-.++.-=.-.++. +|++ +.|...+-.=+++|++ .+-+.-++-||.++-.=-.+
T Consensus 23 l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 3444455777776554 44455555554555555 7888 4444455555566665 45455666677666555567
Q ss_pred CCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCc
Q 020278 116 CSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSN 187 (328)
Q Consensus 116 ~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~w~~~~ 187 (328)
..+.||| .|+..+-+-++ |+..+..+-.+ ..-.+.+...|..+-..|--.+.|-.
T Consensus 99 ~~~~p~l--~Rei~tp~l~~-~i~~ll~l~~~--------------~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 99 IRGKPTL--TREIATPNLPK-FIQSLLQLLQD--------------SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred hcCCCch--HHHHhhccHHH-HHHHHHHHHhc--------------cccHHHHHHHHHHHHHHCCccccchH
Confidence 7799999 88888877555 88777654211 45567888888888888877776654
No 10
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=47.03 E-value=1e+02 Score=30.28 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=74.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhchhccc---------CCCC--ChHHHHHHHHHHHhCCCCCCch----hHHHHHHHHHH
Q 020278 67 REQNICAAYAVLELFCEFLLARVPILES---------QKEC--PTEMREAVASIIFAAPRCSDLP----DLLQIKNLFSA 131 (328)
Q Consensus 67 rEdn~ieayEiLElyCElLl~R~~lIe~---------~kec--P~eLkEAIsSIIyAApR~~dlp----EL~~IR~~f~~ 131 (328)
.|-|+..++..|+.+|+.|.-=-++.+. .+.. +-.+.-=++.-||++.|...+| |...+...-..
T Consensus 93 ~ernl~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~V~~k 172 (285)
T COG1405 93 KERNLITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALGVSKK 172 (285)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHH
Confidence 4667777888888887765433222221 1111 3356667788899999975555 66666665567
Q ss_pred HhcHHHHHHHHhcCCCC-Ccc-----HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCch
Q 020278 132 KYGKEFVLAVSELRPDS-SVN-----RTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNT 188 (328)
Q Consensus 132 KYGkeFv~~a~e~~~~~-~Vn-----~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~w~~~~~ 188 (328)
.+|+-|-..+.++.... .++ +++...|+.. +....+-..|..-|++.|+.|...+.
T Consensus 173 ei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~-~~v~~~a~ei~~~~~~~g~~~Gk~P~ 234 (285)
T COG1405 173 EIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLS-DEVRRKAIEIVKKAKRAGLTAGKSPA 234 (285)
T ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhCcccCCCch
Confidence 78887766665553211 122 4777888877 44455555566667778888865543
No 11
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=44.11 E-value=90 Score=25.84 Aligned_cols=108 Identities=25% Similarity=0.430 Sum_probs=59.3
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCC-C--CchhHHHHHHHHHHHhc------HHHHHHHHhcCCCCCcc-HHHHhhcCCCC
Q 020278 93 ESQKECPTEMREAVASIIFAAPRC-S--DLPDLLQIKNLFSAKYG------KEFVLAVSELRPDSSVN-RTIIEKLSVSA 162 (328)
Q Consensus 93 e~~kecP~eLkEAIsSIIyAApR~-~--dlpEL~~IR~~f~~KYG------keFv~~a~e~~~~~~Vn-~~iv~KLs~~~ 162 (328)
......++. ..++..|++...++ | +-.|...|+..+...+| .+....+.+.... .++ .+++..|....
T Consensus 14 ~~~~~~~~~-~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~ 91 (140)
T PF05099_consen 14 FKRLRQPQE-REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE-PIDLEELLRELRDSL 91 (140)
T ss_dssp HTTT--STT-HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH-CCHHHHHHHHHCTS-
T ss_pred ccccCCchH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHhh
Confidence 333334444 77777777666665 3 66799999999999999 4444333322211 122 36666776653
Q ss_pred C--CHHHHHHHHHHHHHHcCCCCCCCchhhHhhhhhhcccCCCcc
Q 020278 163 P--SSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLGGSKE 205 (328)
Q Consensus 163 P--s~elv~~yL~EIA~ey~V~w~~~~~e~~~~~~~~d~~~~~~~ 205 (328)
+ ....+...+..||..-| .-+..|.++-..-.+.++-+..
T Consensus 92 ~~~~r~~ll~~l~~ia~ADG---~~~~~E~~~l~~ia~~L~i~~~ 133 (140)
T PF05099_consen 92 SPEEREDLLRMLIAIAYADG---EISPEEQEFLRRIAEALGISEE 133 (140)
T ss_dssp -HHHHHHHHHHHHHHCTCTT---C-SCCHHHHHHHHHHHCTS-SS
T ss_pred chHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCCHH
Confidence 3 22334444555555544 4555677777776666665543
No 12
>PRK14136 recX recombination regulator RecX; Provisional
Probab=43.73 E-value=1.8e+02 Score=29.14 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHc-CCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhch-----hcccCCCCChHHHHHHHHHHHhCC
Q 020278 41 QMRKEIAQFLQA-GQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVP-----ILESQKECPTEMREAVASIIFAAP 114 (328)
Q Consensus 41 ~~RrDIA~LL~~-Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~-----lIe~~kecP~eLkEAIsSIIyAAp 114 (328)
..+.||.+.|.. |-.+..--.|=.-+.+.++++=..+-+.|+..-..+.+ .=-.+|-++.++.+.+-..+
T Consensus 177 RSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIEqALeei---- 252 (309)
T PRK14136 177 YSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVESVGAQL---- 252 (309)
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 367788887776 43333333443334455555555556666644222211 11136888888877544322
Q ss_pred CCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 020278 115 RCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHN 180 (328)
Q Consensus 115 R~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~ 180 (328)
+..|+..++.++..||+. +-. +..--.+++.-|.-+-++.+.+.++|+..-.++|
T Consensus 253 ---eEDE~E~A~~L~eKK~~~-~~~-------d~kek~K~iRfL~rRGFS~D~I~~vLk~~~de~~ 307 (309)
T PRK14136 253 ---RETEFERAQAVWRKKFGA-LPQ-------TPAERAKQARFLAARGFSSATIVKLLKVGDDEFG 307 (309)
T ss_pred ---cHhHHHHHHHHHHHHhcc-cCc-------CHHHHHHHHHHHHHCCCCHHHHHHHHHhchhccc
Confidence 346889999999999975 210 1112346788899999999999999987766653
No 13
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=43.53 E-value=17 Score=25.07 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCCCCCchhhHhh
Q 020278 170 KVLKEIAQEHNLNWDSSNTESELS 193 (328)
Q Consensus 170 ~yL~EIA~ey~V~w~~~~~e~~~~ 193 (328)
--|++|..+|||+|++.+...+|-
T Consensus 7 ~~Lk~iL~~~~I~~ps~AkKaeLv 30 (35)
T PF12949_consen 7 AQLKRILDEHGIEFPSNAKKAELV 30 (35)
T ss_dssp HHHHHHHHHHT---SSS--SHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHH
Confidence 348999999999999988765543
No 14
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=43.19 E-value=2e+02 Score=24.06 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHH
Q 020278 41 QMRKEIAQFLQAGQEPIARIRVEHV 65 (328)
Q Consensus 41 ~~RrDIA~LL~~Gk~e~AriRVE~l 65 (328)
+.|++|.+.|.+|+.+.|.-.++..
T Consensus 3 ~~r~~I~~~I~~g~i~~Ai~w~~~~ 27 (145)
T PF10607_consen 3 KERKKIRQAILNGDIDPAIEWLNEN 27 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4689999999999999999888654
No 15
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=42.90 E-value=3.6e+02 Score=28.21 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=72.8
Q ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchhcc
Q 020278 16 KCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQ--NICAAYAVLELFCEFLLARVPILE 93 (328)
Q Consensus 16 K~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEd--n~ieayEiLElyCElLl~R~~lIe 93 (328)
-||-.+.=...+|.+-|+-...+-...|.|||.||... ...|-..+|++|+|- .+-|+-++|+.=-+-|.+.+-.|+
T Consensus 159 ~LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~LL~qd-W~~AI~~Ce~LL~EtsgtLRELqdtL~aagd~lqa~Ll~IQ 237 (440)
T PF03882_consen 159 PLKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAALLNQD-WRAAIQSCEQLLDETSGTLRELQDTLEAAGDKLQAQLLRIQ 237 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46667777789999999999999999999999999764 577888999999974 668999999998888888877766
Q ss_pred c---CCCCChHHHHHHHHHH
Q 020278 94 S---QKECPTEMREAVASII 110 (328)
Q Consensus 94 ~---~kecP~eLkEAIsSII 110 (328)
. .+.-..-+.+.+.+|.
T Consensus 238 e~~~~~~~l~~v~~l~~~Lq 257 (440)
T PF03882_consen 238 EAVMGRDELEFVDNLIFDLQ 257 (440)
T ss_dssp HHHHCSSS-HHHHHHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHH
Confidence 4 3333333455555554
No 16
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=40.72 E-value=3e+02 Score=28.21 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCcc
Q 020278 72 CAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVN 151 (328)
Q Consensus 72 ieayEiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn 151 (328)
-+-.+=+..||++|.++++ |.|....+|+-|+.+.|| ||-++-...=+.|+ ..+
T Consensus 187 g~H~~Rv~~~~~~lAe~lg-----------Lse~~v~~i~~AapLHDI--------------GKvaiPD~ILlKpg-~Lt 240 (360)
T COG3437 187 GDHLERVAQYSELLAELLG-----------LSEEEVDLIKKAAPLHDI--------------GKVAIPDSILLKPG-KLT 240 (360)
T ss_pred hhHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHhccchhhc--------------ccccCChHHhcCCC-CCC
Confidence 3444556789999999996 556666677666667777 55444333333333 233
Q ss_pred HHHHhhcCCCC------CCHHH-HHHHHHHHHHHcCCCCCCCc
Q 020278 152 RTIIEKLSVSA------PSSEA-RLKVLKEIAQEHNLNWDSSN 187 (328)
Q Consensus 152 ~~iv~KLs~~~------Ps~el-v~~yL~EIA~ey~V~w~~~~ 187 (328)
+.-.......+ -.... ..+...|||..|.=-||.+-
T Consensus 241 ~ee~~imk~H~~~G~~il~~s~~~mq~a~eIa~~HHErwDGsG 283 (360)
T COG3437 241 SEEFEIMKGHPILGAEILKSSERLMQVAAEIARHHHERWDGSG 283 (360)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 22222111111 01111 68999999999999998764
No 17
>PHA03191 UL14 tegument protein; Provisional
Probab=37.97 E-value=59 Score=31.17 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=33.5
Q ss_pred ccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCchhhHhhhhhhcccC
Q 020278 150 VNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTESELSKKHEDLLG 201 (328)
Q Consensus 150 Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~w~~~~~e~~~~~~~~d~~~ 201 (328)
.++.|+++|...-=+--.++..|.+.+.+-+. |+....+..|+...|+||.
T Consensus 99 L~pdf~e~lD~~ED~i~dkEd~L~da~~di~l-~~~~~~~~wLdeedEALLt 149 (238)
T PHA03191 99 LNPELQSQLDQAEEDILDKEDILTQACDDITL-ADSSEDIEELDEEAEALLT 149 (238)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccchHHHHHH
Confidence 44445555544433444567778888876665 6666666788888888876
No 18
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=36.09 E-value=1.2e+02 Score=30.24 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHH-hCCCCCCchh--HHHHHHHHHHHhcHHHHHHHHhcCCCCCcc
Q 020278 75 YAVLELFCEFLLARVPILESQKECPTEMREAVASIIF-AAPRCSDLPD--LLQIKNLFSAKYGKEFVLAVSELRPDSSVN 151 (328)
Q Consensus 75 yEiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIy-AApR~~dlpE--L~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn 151 (328)
.+.|..||+-+.. .++.+...||.++++....|=- +..|++|-++ +.-|...+-.| |.-. .-|+
T Consensus 130 ~~~L~~~~~~~~~--~I~~S~~~~P~~lr~i~~~lr~~v~~rFp~~~~~~~~aVsgFlFLR----F~cP-------AIlS 196 (313)
T cd05394 130 KENLRYYVDKVFF--CIVKSSMSCPTVMCDIFYSLRHMAVKRFPNDPHVQYSAVSSFVFLR----FFAV-------AVVS 196 (313)
T ss_pred HHHHHHHHHHHHH--HHHhCcccCcHHHHHHHHHHHHHHHHHCCChHhhHHHHHHHHHHHH----Hhhh-------hhcC
Confidence 4666677776665 3467777888887776544422 2334543332 12333333333 2222 2467
Q ss_pred HHHHhhcCCCCCCH------HHHHHHHHHHH
Q 020278 152 RTIIEKLSVSAPSS------EARLKVLKEIA 176 (328)
Q Consensus 152 ~~iv~KLs~~~Ps~------elv~~yL~EIA 176 (328)
|+.-.... ..|+. .++-|+|+.||
T Consensus 197 P~lf~L~~-~~p~~~~~RtLtLIaKvLQnLA 226 (313)
T cd05394 197 PHTFHLRP-HHPDAQTSRTLTLISKTIQTLG 226 (313)
T ss_pred cccccccC-CCCChhhhHHHHHHHHHHHHHh
Confidence 77666443 44544 35566666666
No 19
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.78 E-value=2.8e+02 Score=26.47 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=23.2
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHH----HHHHHHHHHHHH
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMK----LLQNKRELQLQQ 41 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~----lLq~Kr~~~~k~ 41 (328)
||+|+.+||++..- -+..-.-+|.||+ +|-+|..-.-++
T Consensus 1 ms~~~~~FG~~k~~--~~~t~~eaI~kLrEteemL~KKqe~Le~k 43 (221)
T KOG1656|consen 1 MSMFSRLFGGMKQE--AKPTPQEAIQKLRETEEMLEKKQEFLEKK 43 (221)
T ss_pred CcHHHHHhCccccc--CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998432 2333334666665 555554433333
No 20
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.12 E-value=1e+02 Score=27.51 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=54.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHH-----------HHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCC
Q 020278 96 KECPTEMREAVASIIFAAPRCSDLPDLLQIKNLF-----------SAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPS 164 (328)
Q Consensus 96 kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f-----------~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps 164 (328)
..+|+++++-+.-.+-...+. ..-.+..+...+ ..|||+.|.......+....+-.-+++.+... |.
T Consensus 8 d~LP~eir~~l~~~L~~~~~t-~~ei~~~~~~~~~~~g~~iSrSav~RY~~~~~~~~~~lr~are~a~al~~~~~~~-~~ 85 (180)
T PF11985_consen 8 DLLPPEIREWLDQMLRDGGFT-QYEILAEWLEELAEEGYDISRSAVHRYAQRFEEVLERLREAREIAEALAEELGDE-PE 85 (180)
T ss_pred hhCCHHHHHHHHHHHHhCCCC-hHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Confidence 368999999999988887765 555677777776 45999999877665543334455677777765 32
Q ss_pred HHHHHHHHHHHHHH
Q 020278 165 SEARLKVLKEIAQE 178 (328)
Q Consensus 165 ~elv~~yL~EIA~e 178 (328)
..+...+.++.+.
T Consensus 86 -~~~~~al~~~~~~ 98 (180)
T PF11985_consen 86 -DDVTEALIEMLQT 98 (180)
T ss_pred -chHHHHHHHHHHH
Confidence 3345555555554
No 21
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=33.75 E-value=72 Score=25.92 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=26.1
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHH
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQN-KR-----ELQLQQMRKEIAQFLQ 51 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~-Kr-----~~~~k~~RrDIA~LL~ 51 (328)
|+||+-+|++. +..-..|..||+++=. .| ...+.++|+||-+-+.
T Consensus 1 M~l~~~f~~kk------~~Sa~~AKeRLq~iL~~dR~~~~~p~~l~~lk~dIl~VIs 51 (86)
T PRK00296 1 MSLLDFFRSRK------KSTANVAKERLQIIVAHERSSRGEPDYLPQLRKEILEVIA 51 (86)
T ss_pred CchHHhhccCC------CCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 89999765542 2234457888885432 22 1245566666665554
No 22
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=33.11 E-value=1.7e+02 Score=27.99 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCchh
Q 020278 122 LLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLNWDSSNTE 189 (328)
Q Consensus 122 L~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~w~~~~~e 189 (328)
....|.+|..|||| ++..|... |+... ++.-+|.+......|.++..+.-+.+-|.-..
T Consensus 63 ~~~~r~ifqrR~~K-iv~~A~~~-----~~~~~---~~~Lt~eEk~ly~~l~~~I~~e~~~~l~~i~~ 121 (223)
T COG1711 63 KSDARSIFQRRYGK-IVSRAIYD-----VPGET---ISNLTPEEKELYEDLVNFIEDERISFLPTIDV 121 (223)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHh-----ccccc---hhcCCHHHHHHHHHHHHHHhhchhhccchhhc
Confidence 45689999999999 77777643 33323 55556778888888999999999998887654
No 23
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.23 E-value=1.1e+02 Score=23.44 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 020278 44 KEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLA 87 (328)
Q Consensus 44 rDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~ 87 (328)
++|...+.+|....++..++.++.+ -..+.+||...-+.+..
T Consensus 9 ~~i~~~~~~~~~~~~~~~~~~l~~~--G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 9 EEILESCLNGDFKEARKKLYELLVE--GYSASDILKQLHEVLVE 50 (89)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT--T--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 4788888899999999999999998 67788888877777665
No 24
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=30.82 E-value=24 Score=25.94 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHH---HHHHHHHHhcHHHHHH
Q 020278 72 CAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQ---IKNLFSAKYGKEFVLA 140 (328)
Q Consensus 72 ieayEiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~---IR~~f~~KYGkeFv~~ 140 (328)
.++|+-|-.+++-+....+ +....-++.+....++.- -|. ++.||.. +......+||.+|.+.
T Consensus 2 ~~~~~~L~~~R~~~A~~~~-~~~~~Il~~~~L~~ia~~---~P~--s~~~L~~i~g~~~~~~~~~g~~il~~ 67 (68)
T PF00570_consen 2 LALLKALKEWREELAREED-VPPYRILSDEALLEIAKR---LPT--SIEELLQIPGMGKRKVRKYGDEILEI 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-HHHHS-HHHHHHHHHH-----S--SHHHHHTSTTCGHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-cCcccccCHHHHHHHHHh---CCC--CHHHHHHccCCCHHHHHHHHHHHHhh
Confidence 3567777777777776665 333345555555555543 444 5555555 5778889999999764
No 25
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=30.44 E-value=56 Score=27.01 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=29.1
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNKRE------LQLQQMRKEIAQFLQ 51 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~Kr~------~~~k~~RrDIA~LL~ 51 (328)
|+||+-+|+++.++ -..|..||+++=.... ..+-++|+||-..+.
T Consensus 1 Msl~dff~~r~~~S------a~~AkeRLQiilA~eR~~~~~pd~l~~Lr~eIl~VI~ 51 (88)
T COG0851 1 MSLFDFFFSRKKNS------AETAKERLQLILAHERAAGLQPDYLEQLRKEILEVIS 51 (88)
T ss_pred CcHHHHHHhcCCCc------HHHHHHHHHHhhhhhhhcCCCcchHHHHHHHHHHHHH
Confidence 99999999887532 2246677775433332 246678888866554
No 26
>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]
Probab=24.42 E-value=1e+02 Score=31.09 Aligned_cols=39 Identities=23% Similarity=0.515 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCC
Q 020278 96 KECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRP 146 (328)
Q Consensus 96 kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~ 146 (328)
+.||+|+..+++.|+| +| .=|+.+.. -.-|...|+.|.|
T Consensus 237 ~~Lp~DI~~sLa~Ic~---~~-------~~reyl~A--ndaYlklAIGNAP 275 (341)
T KOG2808|consen 237 KNLPADIRQSLADICY---LC-------QKREYLKA--NDAYLKLAIGNAP 275 (341)
T ss_pred cCCCHHHHHHHHHHHH---HH-------hhHHHHHH--HHHHHHHHccCCC
Confidence 6899999999999999 55 11222222 1456777777754
No 27
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.71 E-value=1e+02 Score=32.05 Aligned_cols=29 Identities=38% Similarity=0.321 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020278 285 SSDVLERARAAIASAERASAAARTAAELV 313 (328)
Q Consensus 285 ~~d~~~~a~aa~~sa~~a~~aaraa~el~ 313 (328)
-+++...++++++++..+++|||||++-.
T Consensus 236 L~~~Ias~e~~aA~~re~~aa~~aa~~~~ 264 (420)
T COG4942 236 LKNEIASAEAAAAKAREAAAAAEAAAARA 264 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888889988988888887654
No 28
>KOG0795 consensus Chorismate mutase [Amino acid transport and metabolism]
Probab=23.36 E-value=2.9e+02 Score=26.74 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccH---
Q 020278 76 AVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNR--- 152 (328)
Q Consensus 76 EiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~--- 152 (328)
+|.++|.+-|+-++.---....|+.- |+ | |+-=|+.+..- .+||| |++.|.= .-|+
T Consensus 119 kIw~~Yf~~lvP~ivkpGDDgNygSt---a~---------c-D~~CLQ~LSrR--IHyGK-FVAEaKf-----~~~p~~Y 177 (262)
T KOG0795|consen 119 KIWNMYFKELVPLIVKPGDDGNYGST---AV---------C-DIECLQSLSRR--IHYGK-FVAEAKF-----QANPEAY 177 (262)
T ss_pred HHHHHHHHHHhhhhcCCCCCCCcchH---HH---------H-HHHHHHHHHHH--hhhhh-hhhhhHh-----hcCHHHH
Confidence 57888998888777543323333321 11 2 33335554442 37998 8887741 1222
Q ss_pred ----------HHHhhcCCCCCCHHHHHHHHHHHHHHcC--CCCCCCch
Q 020278 153 ----------TIIEKLSVSAPSSEARLKVLKEIAQEHN--LNWDSSNT 188 (328)
Q Consensus 153 ----------~iv~KLs~~~Ps~elv~~yL~EIA~ey~--V~w~~~~~ 188 (328)
-+++.|... --++.|.+-+.--|..|| |.+..+++
T Consensus 178 e~aIkaqD~~~lm~~lt~~-~vEe~vkkRv~~Ka~~yGqdvk~~~~~t 224 (262)
T KOG0795|consen 178 EKAIKAQDREGLMKLLTFE-AVEEKVKKRVEKKAETYGQDVKFNVDPT 224 (262)
T ss_pred HHHHHHhhHHHHHHHhhHH-HHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 233444333 346777777888888888 34444444
No 29
>PRK08084 DNA replication initiation factor; Provisional
Probab=21.87 E-value=96 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=34.3
Q ss_pred CccHHHHhhc------CCCCCCHHHHHHHHHHHHHHcCCCCCCCch
Q 020278 149 SVNRTIIEKL------SVSAPSSEARLKVLKEIAQEHNLNWDSSNT 188 (328)
Q Consensus 149 ~Vn~~iv~KL------s~~~Ps~elv~~yL~EIA~ey~V~w~~~~~ 188 (328)
.+++.+..|| ...+|+.+.+.++|+..|..+|+.|+++..
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~ 192 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVG 192 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4678899888 688899999999999999999999877654
No 30
>PRK05260 condesin subunit F; Provisional
Probab=21.35 E-value=7.2e+02 Score=26.16 Aligned_cols=94 Identities=20% Similarity=0.138 Sum_probs=70.9
Q ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchhcc
Q 020278 16 KCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQ--NICAAYAVLELFCEFLLARVPILE 93 (328)
Q Consensus 16 K~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEd--n~ieayEiLElyCElLl~R~~lIe 93 (328)
-||..++=...+|.+-|+=..++-...|.|||.||.+. ...|-..+|+++.|- ++-|+-++|+.=-+-|.+.+-.|+
T Consensus 159 ~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qd-W~~AI~~Ce~LLdEtsgtLRELqdtL~aagD~lqaqLl~IQ 237 (440)
T PRK05260 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ 237 (440)
T ss_pred cCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35666667778999999999999999999999999765 566777889999874 678899999999988888887777
Q ss_pred c---CCCCChHHHHHHHHHH
Q 020278 94 S---QKECPTEMREAVASII 110 (328)
Q Consensus 94 ~---~kecP~eLkEAIsSII 110 (328)
. .+.-+.-+.+.+..|.
T Consensus 238 ~~~~~~~~l~~vd~~~~~Lq 257 (440)
T PRK05260 238 DATMGRDDLDFVDRLVFDLQ 257 (440)
T ss_pred HHHhcCCcHHHHHHHHHHHH
Confidence 4 2332222445554443
No 31
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=20.94 E-value=2.4e+02 Score=23.60 Aligned_cols=46 Identities=35% Similarity=0.477 Sum_probs=25.6
Q ss_pred CchhhhhhcCCCCccchHHHHhhHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHc
Q 020278 1 MSLLNQLFNRGVFGAKCKTSLTLGISRMKLLQNK-R----ELQLQQMRKEIAQFLQA 52 (328)
Q Consensus 1 m~~~~~~f~~~~~~sK~Kt~LkLaisRL~lLq~K-r----~~~~k~~RrDIA~LL~~ 52 (328)
|.||+.+|++.. ..-..|..||+++=-. | -....++|+||.+-+..
T Consensus 4 ~~~l~~lf~~k~------~Sa~~AK~RLk~iL~~dR~~~sp~~l~~mk~dIl~VIsk 54 (97)
T PRK13988 4 RDLLEKLFGRQP------ASASTARERLQLVLAHDRADLSPELLEQMRKEILEVVAR 54 (97)
T ss_pred HHHHHHHhcCCC------CcHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345666665421 2334577888854322 2 24566777777666553
No 32
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=20.29 E-value=4.9e+02 Score=22.69 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCC-CCCc---hhHHHHHHHHHHHhcHHHHHHHHhc
Q 020278 69 QNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPR-CSDL---PDLLQIKNLFSAKYGKEFVLAVSEL 144 (328)
Q Consensus 69 dn~ieayEiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR-~~dl---pEL~~IR~~f~~KYGkeFv~~a~e~ 144 (328)
+|+-.+.++.+.+++.|... ...||.+++--+..|--+..+ +++. --+..|...|-.| |+-.|.
T Consensus 97 ~n~~~L~~~~~~~~~~i~~s------~~~~P~~lr~i~~~i~~~~~~~fp~~~~~~~~~~v~~fiflr----fi~PAi-- 164 (197)
T PF00616_consen 97 ENLQNLRELCESFLDAIISS------IDQIPPSLRYICKQIYEAVEKKFPDASPEEILSAVGGFIFLR----FICPAI-- 164 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHGG------GGGS-HHHHHHHHHHHHHHHHHTTTSSHCHHHHHHHHHHTTT----THHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHh------HHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----HHHHHH--
Confidence 55555555555555555544 467899998766555444333 4332 2244555555544 444443
Q ss_pred CCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 020278 145 RPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQ 177 (328)
Q Consensus 145 ~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ 177 (328)
++|+...-+ ..|......+-|..||+
T Consensus 165 -----~~P~~~~~~--~~~~~~~~~r~L~~isK 190 (197)
T PF00616_consen 165 -----VSPELFGLV--DKPPSPNARRNLTLISK 190 (197)
T ss_dssp -----HSTTTTTSS--SS---HHHHHHHHHHHH
T ss_pred -----CCHHHcCCC--CCCCCHHHHHHHHHHHH
Confidence 223332333 23444556666777765
Done!