Query 020278
Match_columns 328
No_of_seqs 136 out of 298
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frr_A Uncharacterized protein 100.0 3.7E-67 1.3E-71 473.1 20.2 182 6-188 2-184 (191)
2 3ggy_A Increased sodium tolera 100.0 3.5E-63 1.2E-67 447.8 17.7 174 11-186 6-187 (193)
3 2gd5_A Charged multivesicular 83.1 2.6 8.9E-05 36.6 6.7 121 15-140 13-133 (179)
4 3frt_A Charged multivesicular 81.7 12 0.00042 33.9 10.8 121 15-140 13-133 (218)
5 1l9l_A Granulysin; saposin fol 68.5 13 0.00044 28.0 6.2 63 81-155 6-69 (74)
6 3jyw_M 60S ribosomal protein L 57.1 9 0.00031 33.9 3.9 24 283-306 141-164 (178)
7 2gtg_A Proactivator polypeptid 55.3 43 0.0015 24.6 7.0 69 81-160 9-79 (83)
8 1nkl_A NK-lysin; saposin fold, 44.5 28 0.00097 25.8 4.4 68 81-159 6-74 (78)
9 2xze_A STAM-binding protein; h 44.4 1.4E+02 0.0048 25.0 9.6 74 62-140 47-121 (146)
10 3bqp_A Proactivator polypeptid 42.2 59 0.002 23.3 5.8 64 81-155 7-71 (80)
11 3s0r_A De novo designed helica 38.5 48 0.0016 20.9 4.0 24 287-310 5-28 (30)
12 1t98_A KICB protein, chromosom 35.9 2.5E+02 0.0086 26.3 10.1 78 15-93 158-237 (287)
13 1zxj_A MPN555, hypothetical pr 33.5 51 0.0017 29.8 5.0 113 38-182 57-175 (218)
14 1of9_A Pore-forming peptide am 33.1 1.2E+02 0.0042 22.2 6.4 63 81-155 7-70 (77)
15 2vxg_A LD41624, GE-1, CG6181-P 31.1 28 0.00095 29.4 2.7 38 42-86 3-40 (139)
16 3h8k_B Autocrine motility fact 27.7 75 0.0026 20.1 3.6 23 24-46 3-25 (28)
17 3cay_A LPD-12; alpha helix, ac 26.2 75 0.0026 19.6 3.3 19 292-310 4-22 (27)
18 2qyp_A Proactivator polypeptid 26.1 25 0.00087 26.5 1.5 72 81-163 10-83 (91)
19 1q1v_A DEK protein; winged-hel 23.1 90 0.0031 23.3 4.0 43 91-135 4-49 (70)
20 3euh_A Protein KICB, chromosom 23.0 4E+02 0.014 26.5 9.5 79 15-94 158-238 (440)
No 1
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=100.00 E-value=3.7e-67 Score=473.07 Aligned_cols=182 Identities=37% Similarity=0.594 Sum_probs=176.9
Q ss_pred hhhcCCCCccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020278 6 QLFNRGVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFL 85 (328)
Q Consensus 6 ~~f~~~~~~sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElL 85 (328)
.||++||+++|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+|||++++|||||+|||+|
T Consensus 2 ~mf~~~~~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL 81 (191)
T 3frr_A 2 HMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLL 81 (191)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhcccCCCCChHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCC
Q 020278 86 LARVPILESQKECPTEMREAVASIIFAAPRC-SDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPS 164 (328)
Q Consensus 86 l~R~~lIe~~kecP~eLkEAIsSIIyAApR~-~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps 164 (328)
++|+++|+++++||+||+|||+||||||||| +|+|||..||++|+.|||++|+..|.+|+++ +||++|++||++.+|+
T Consensus 82 ~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~-~Vn~~iv~kLs~~~P~ 160 (191)
T 3frr_A 82 LARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIG-TVNDRLMHKLSVEAPP 160 (191)
T ss_dssp HHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTS-CSCHHHHHHTCCSCCC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCC-CcCHHHHHHcCCCCcC
Confidence 9999999999999999999999999999998 8999999999999999999999999999865 5999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCch
Q 020278 165 SEARLKVLKEIAQEHNLNWDSSNT 188 (328)
Q Consensus 165 ~elv~~yL~EIA~ey~V~w~~~~~ 188 (328)
.++|++||+|||++|||+|+|++.
T Consensus 161 ~~lv~~yL~EIA~~y~V~w~p~~~ 184 (191)
T 3frr_A 161 KILVERYLIEIAKNYNVPYEPDSV 184 (191)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCchh
Confidence 999999999999999999999875
No 2
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=100.00 E-value=3.5e-63 Score=447.77 Aligned_cols=174 Identities=33% Similarity=0.445 Sum_probs=169.3
Q ss_pred CCCccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhch
Q 020278 11 GVFGAKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVP 90 (328)
Q Consensus 11 ~~~~sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~ 90 (328)
.+|++|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+|||++++|||||+|||+|++|++
T Consensus 6 ~~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ 85 (193)
T 3ggy_A 6 IPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQ 85 (193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc--------CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCC
Q 020278 91 ILES--------QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSA 162 (328)
Q Consensus 91 lIe~--------~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~ 162 (328)
+|++ +++||+||+|||+|||||+|||+|+|||..||++|+.|||++|+..|.+|. ++||++|++||++.+
T Consensus 86 ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~--~gVn~kiv~kLs~~~ 163 (193)
T 3ggy_A 86 VINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADH--IDVPEKIIKKCSPSV 163 (193)
T ss_dssp HHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHC--TTCCHHHHHHHSCCC
T ss_pred HHHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcC--CCCCHHHHHHcCCCC
Confidence 9999 699999999999999999999999999999999999999999999999985 459999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCC
Q 020278 163 PSSEARLKVLKEIAQEHNLNWDSS 186 (328)
Q Consensus 163 Ps~elv~~yL~EIA~ey~V~w~~~ 186 (328)
|+.++|++||+|||++|||+|++.
T Consensus 164 P~~elv~~yL~EIA~ey~V~w~~~ 187 (193)
T 3ggy_A 164 PKEELVDLYLKEIAKTYDVPYSKL 187 (193)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999864
No 3
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=83.12 E-value=2.6 Score=36.55 Aligned_cols=121 Identities=8% Similarity=0.138 Sum_probs=74.5
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhccc
Q 020278 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILES 94 (328)
Q Consensus 15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~ 94 (328)
.+++..|+-++..|.--.+|-...-+....+|-...+.|+.+.|||.+..+||--+...=|--...-.+-+..|+.....
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888899999999999999999999999999887644333333333333333322221
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHH
Q 020278 95 QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLA 140 (328)
Q Consensus 95 ~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~ 140 (328)
....-..++.+ +-++=...+.-++|++..+=.-| .++|...
T Consensus 93 ~~~v~~am~~~-~~~M~~~n~~m~l~~i~~~M~e~----~~e~~~~ 133 (179)
T 2gd5_A 93 VLRVAGSLQKS-TEVMKAMQSLVKIPEIQATMREL----SKEMMKA 133 (179)
T ss_dssp HHHHTSSCCCC-SHHHHTTTSSTTSSSCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH----HHHHHHH
Confidence 11000001101 12233334444788887665554 4555433
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=81.67 E-value=12 Score=33.88 Aligned_cols=121 Identities=8% Similarity=0.138 Sum_probs=88.9
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhccc
Q 020278 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLLARVPILES 94 (328)
Q Consensus 15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl~R~~lIe~ 94 (328)
.+|+..||-.+--|.--.++-...-++...+|-...+.|+.+.|||=+..+||--+...=|--+-.-.+-+..|+...-.
T Consensus 13 r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s 92 (218)
T 3frt_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999888888888888888999999999999999999999999999999988877777777777777766655
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHH
Q 020278 95 QKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLA 140 (328)
Q Consensus 95 ~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~ 140 (328)
....-..+.. ++.++=...+.-++|+|..+=. .|.++|...
T Consensus 93 ~~~v~~sM~~-st~~M~~~n~~m~l~~i~~tM~----efekE~~k~ 133 (218)
T 3frt_A 93 VLRVAGSLQK-STEVMKAMQSLVKIPEIQATMR----ELSKEMMKA 133 (218)
T ss_dssp CC----CCCC-CHHHHHHHHHSTTSHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHh
Confidence 4443332222 2233333444448999887654 455666653
No 5
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=68.53 E-value=13 Score=27.95 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPD-LLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTII 155 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpE-L~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv 155 (328)
.|++++..+.-+- .+.--.++++++..+ |+-+|- |....+.|+.+||...+..... ..+|+.|
T Consensus 6 ~C~~~v~~le~~l-~n~Te~~I~~~L~~v------C~~l~~~~~~~C~~~V~~y~~~Ii~~L~~-----~~~P~~I 69 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DKPTQRSVSNAATRV------CRTGRSRWRDVCRNFMRRYQSRVIQGLVA-----GETAQQI 69 (74)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHG------GGSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHH
T ss_pred HHHHHHHHHHHHh-cccCHHHHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHH
Confidence 5777777776544 444445666666543 566777 9999999999999999988653 4666655
No 6
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=57.11 E-value=9 Score=33.89 Aligned_cols=24 Identities=38% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 020278 283 SQSSDVLERARAAIASAERASAAA 306 (328)
Q Consensus 283 ~~~~d~~~~a~aa~~sa~~a~~aa 306 (328)
-+|.||..+|-||.+.|.-|++||
T Consensus 141 wk~~~~~~~~~~~~~~~~~~~~~~ 164 (178)
T 3jyw_M 141 WKAAAAAAAAAAAAAAAAAAAAAA 164 (178)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 369999998877766555444433
No 7
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=55.30 E-value=43 Score=24.59 Aligned_cols=69 Identities=26% Similarity=0.452 Sum_probs=44.2
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHHhcHHHHHHHHhcCCCCCccHH-HHhhc
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPD-LLQIKNLFSAKYGKEFVLAVSELRPDSSVNRT-IIEKL 158 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpE-L~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~-iv~KL 158 (328)
.|++++..+.-+-..+.--.++.+++..+ |.-+|. +...-..|+..||..++..... .++|. |...|
T Consensus 9 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~------C~~lp~~~~~~C~~~V~~y~~~ii~~l~~-----~~~P~~iC~~l 77 (83)
T 2gtg_A 9 VCEFLVKEVTKLIDNNKTEKEILDAFDKM------CSKLPKSLSEECQEVVDTYGSSILSILLE-----EVSPELVCSML 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH------TTSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHH------HHHCCCcchhHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHhc
Confidence 46666666654444443345566666543 455665 9999999999999999887642 45554 44444
Q ss_pred CC
Q 020278 159 SV 160 (328)
Q Consensus 159 s~ 160 (328)
..
T Consensus 78 ~l 79 (83)
T 2gtg_A 78 HL 79 (83)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 8
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=44.54 E-value=28 Score=25.81 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHH-hhcC
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTII-EKLS 159 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv-~KLs 159 (328)
.|++++..+.-+-..+.--.+++.++..+. .-+|.+...-+.|..+||...+....+ .++|+.| ..|.
T Consensus 6 ~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C------~~lp~~~~~C~~~V~~y~~~iI~~l~~-----~~~P~~IC~~l~ 74 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQPNEDTVTQAASQVC------DKLKILRGLCKKIMRSFLRRISWDILT-----GKKPQAICVDIK 74 (78)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHH------HHSCSTHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHhccC
Confidence 466666666554444444456666666543 235668999999999999999887653 4566444 4443
No 9
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=44.42 E-value=1.4e+02 Score=24.98 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=54.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhchhcccCCCCC-hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHH
Q 020278 62 VEHVIREQNICAAYAVLELFCEFLLARVPILESQKECP-TEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLA 140 (328)
Q Consensus 62 VE~lIrEdn~ieayEiLElyCElLl~R~~lIe~~kecP-~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~ 140 (328)
++.-..+.+...||=++-.||.+++..++-=..-+.+. ++-+..+..+. .. -+++|-.|+..|..+|-++|...
T Consensus 47 A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~---~~--~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 47 ASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLK---EI--AFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHH---HT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHH---HH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888899999999999988876544333332 55666666655 11 38999999999999999988754
No 10
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=42.16 E-value=59 Score=23.33 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP-DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTII 155 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlp-EL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv 155 (328)
.|+.++..+.-+-.+..--.++.+++..+.- + +| .+...-+.|...||..++..... .++|..+
T Consensus 7 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~---~---lp~~~~~~C~~~v~~y~~~ii~~l~~-----~~~P~~i 71 (80)
T 3bqp_A 7 VCKKLVGYLDRNLEKNSTKQEILAALEKGCS---F---LPDPYQKQCDQFVAEYEPVLIEILVE-----VMDPSFV 71 (80)
T ss_dssp HHHHHHHHHHHHSCTTCCHHHHHHHHHHHGG---G---SCGGGHHHHHHHHHHHHHHHHHHHTT-----CCCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---h---CCCccchhhHHHHHHHHHHHHHHHHH-----CCCHHHH
Confidence 4777777766555544444566666665432 3 34 38999999999999999887642 4566443
No 11
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=38.55 E-value=48 Score=20.91 Aligned_cols=24 Identities=42% Similarity=0.392 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020278 287 DVLERARAAIASAERASAAARTAA 310 (328)
Q Consensus 287 d~~~~a~aa~~sa~~a~~aaraa~ 310 (328)
.+++-|+.|+|-|.-|-.|||.|.
T Consensus 5 saleyaqqalekaqlalqaarqal 28 (30)
T 3s0r_A 5 SALEYAQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468889999999999999999875
No 12
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=35.90 E-value=2.5e+02 Score=26.28 Aligned_cols=78 Identities=24% Similarity=0.183 Sum_probs=64.9
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchhc
Q 020278 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQ--NICAAYAVLELFCEFLLARVPIL 92 (328)
Q Consensus 15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEd--n~ieayEiLElyCElLl~R~~lI 92 (328)
.-+|-.+--...||.+-|+-.+.+....+.|||.||... .-.|-..+|+++.|- ++-|+-|.|+.--+-|.+.+--|
T Consensus 158 apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qD-W~~AI~~CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~I 236 (287)
T 1t98_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 346666667778999999999999999999999999875 566777999999874 67899999999988888877655
Q ss_pred c
Q 020278 93 E 93 (328)
Q Consensus 93 e 93 (328)
+
T Consensus 237 Q 237 (287)
T 1t98_A 237 Q 237 (287)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=33.48 E-value=51 Score=29.76 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCC
Q 020278 38 QLQQMRKEIAQFLQAGQEPIARIRVEH-VIREQNICAAYAVLELFCEFLLARVPILESQKECPTEMREAVASIIFAAPRC 116 (328)
Q Consensus 38 ~~k~~RrDIA~LL~~Gk~e~AriRVE~-lIrEdn~ieayEiLElyCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~ 116 (328)
-+..+|.+|-.-|..-+...+....++ .++...--.+++ -|++...+ ++|+.
T Consensus 57 tleeLKe~Irk~le~e~e~~~~~~~~~~~~~~~~k~~vld-------~Lve~~e~-----evPea--------------- 109 (218)
T 1zxj_A 57 FIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMN-------AIVGYFEF-----NIDEA--------------- 109 (218)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH-------HHGGGEEE-----ECCHH---------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHhCCC-----CCCHH---------------
Confidence 345677777777777776666554555 333333333332 23333321 45654
Q ss_pred CCchhHHHHHHHHHHH-hcH----HHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 020278 117 SDLPDLLQIKNLFSAK-YGK----EFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEHNLN 182 (328)
Q Consensus 117 ~dlpEL~~IR~~f~~K-YGk----eFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey~V~ 182 (328)
|...+...|..+ ++. .|-..|...-..+.|=..|+++-++. ++.+.+...+.++|..|+-+
T Consensus 110 ----Ev~~l~~q~~q~~l~~q~~e~~re~AErRVKlgLvL~eIak~e~Ie-VtdEEV~~~I~e~A~~Y~~~ 175 (218)
T 1zxj_A 110 ----ELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVFNHLQKEWKVE-ITDEVVKNVISLYYEKTNQS 175 (218)
T ss_dssp ----HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHSCSC
T ss_pred ----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHcCCC
Confidence 888888888888 763 66666643211235556777777775 78999999999999999943
No 14
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=33.10 E-value=1.2e+02 Score=22.23 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDL-PDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTII 155 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dl-pEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv 155 (328)
.|++++..+.-+-..+ --.+++.++..+. .-+ +.+...-+.|..+||...++...+ .++|..|
T Consensus 7 ~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C------~~lp~~~~~~C~~~V~~y~~~iI~~l~~-----~~~P~~I 70 (77)
T 1of9_A 7 LCTGLINTLENLLTTK-GADKVKDYISSLC------NKASGFIATLCTKVLDFGIDKLIQLIED-----KVDANAI 70 (77)
T ss_dssp HHHHHHHHHHHHCSSS-CSHHHHHHHHHHH------TTCSSTTHHHHHHHHHHCHHHHHHHHHH-----TCCHHHH
T ss_pred hHHHHHHHHHHHHHHC-cHHHHHHHHHHHH------HcCChHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHH
Confidence 4777777776655555 5567777777653 334 357999999999999999988764 3566544
No 15
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=31.08 E-value=28 Score=29.37 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020278 42 MRKEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLL 86 (328)
Q Consensus 42 ~RrDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl 86 (328)
.|.+|.+||..|+++.|..++ +=..| .+++.-+|.-+-
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~a--L~ssd-----~~lv~~lc~~~d 40 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQA--LLAND-----LGLVEFTLRHTD 40 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH--HHTTC-----HHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHH--HHhCc-----HHHHHHHHHcCC
Confidence 467899999999999999998 32222 126666676543
No 16
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=27.72 E-value=75 Score=20.08 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020278 24 GISRMKLLQNKRELQLQQMRKEI 46 (328)
Q Consensus 24 aisRL~lLq~Kr~~~~k~~RrDI 46 (328)
+-.|-.+||++|+.++..+|+-.
T Consensus 3 ~~eRq~~Lq~Rk~~mi~~ARrry 25 (28)
T 3h8k_B 3 ADERQRMLVQRKDELLQQARKRF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999853
No 17
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=26.19 E-value=75 Score=19.59 Aligned_cols=19 Identities=47% Similarity=0.370 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020278 292 ARAAIASAERASAAARTAA 310 (328)
Q Consensus 292 a~aa~~sa~~a~~aaraa~ 310 (328)
|+||-..|.+|+.||.-|+
T Consensus 4 aeaaekaakyaaeaaekaa 22 (27)
T 3cay_A 4 AEAAEKAAKYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555677777666554
No 18
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=26.09 E-value=25 Score=26.53 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=40.9
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHHhcHHHHHHHHhcCCCCCccH-HHHhhc
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPD-LLQIKNLFSAKYGKEFVLAVSELRPDSSVNR-TIIEKL 158 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpE-L~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~-~iv~KL 158 (328)
.|+.++..+.-+-..+.-..++.+++-.+.- -+|. +....+.|+..||..++..... .++| .|...|
T Consensus 10 ~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~------~lp~~~~~~C~~~V~~y~~~ii~~l~~-----~~~P~~iC~~l 78 (91)
T 2qyp_A 10 VCEFLVKEVTKLIDNNKTEKEILDAFDKMCS------KLPKSLSEECQEVVDTYGSSILSILLE-----EVSPELVCSML 78 (91)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH------TSCSSTTTTHHHHHHHHHHHHHHHHHH-----TCCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------HCCCCcccchHHHHHHHHHHHHHHHHH-----cCCHHHHHhhc
Confidence 4566555554333222223355555554432 3343 6788899999999999988654 3455 455566
Q ss_pred CCCCC
Q 020278 159 SVSAP 163 (328)
Q Consensus 159 s~~~P 163 (328)
..-.+
T Consensus 79 ~lC~~ 83 (91)
T 2qyp_A 79 HLCSG 83 (91)
T ss_dssp TCC--
T ss_pred CCCCC
Confidence 55543
No 19
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=23.06 E-value=90 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=30.2
Q ss_pred hcccCCCCC--hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHh-cH
Q 020278 91 ILESQKECP--TEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKY-GK 135 (328)
Q Consensus 91 lIe~~kecP--~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KY-Gk 135 (328)
++.+.+..| .++.++|..|+-.+- +..+-. ..||.+|..+| |-
T Consensus 4 l~~k~~~~Psd~ei~~~I~~IL~~aD-L~tvT~-K~VR~~Le~~~pg~ 49 (70)
T 1q1v_A 4 LIKKLKKPPTDEELKETIKKLLASAN-LEEVTM-KQICKKVYENYPTY 49 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHTTSC-GGGCCH-HHHHHHHHHHCSSS
T ss_pred hhhcccCCcCHHHHHHHHHHHHHhCC-HHHHhH-HHHHHHHHHHccCC
Confidence 334444444 689999999997654 334444 88999999999 63
No 20
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=23.03 E-value=4e+02 Score=26.54 Aligned_cols=79 Identities=24% Similarity=0.183 Sum_probs=66.3
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchhc
Q 020278 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQ--NICAAYAVLELFCEFLLARVPIL 92 (328)
Q Consensus 15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEd--n~ieayEiLElyCElLl~R~~lI 92 (328)
.-+|-.++=...+|.+-|+=..++-...|.|||.||.+. ...|-..+|+++.|- .+-|+-+.|+.=-+-|.+.+-.|
T Consensus 158 ~~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~~d-W~~AI~~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~I 236 (440)
T 3euh_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (440)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457788888889999999999999999999999999875 566777899999874 56788899998888888887766
Q ss_pred cc
Q 020278 93 ES 94 (328)
Q Consensus 93 e~ 94 (328)
+.
T Consensus 237 Q~ 238 (440)
T 3euh_A 237 QD 238 (440)
T ss_dssp HH
T ss_pred HH
Confidence 64
Done!