Query 020278
Match_columns 328
No_of_seqs 136 out of 298
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtga1 a.64.1.1 (A:2-79) Sapo 56.5 20 0.0015 24.2 7.1 56 81-142 6-62 (78)
2 d1l9la_ a.64.1.1 (A:) Granulys 55.7 15 0.0011 25.2 6.3 63 81-155 6-69 (74)
3 d1t98a2 a.47.6.1 (A:119-281) C 53.2 53 0.0039 26.5 10.1 78 15-93 40-119 (163)
4 d1of9a_ a.64.1.4 (A:) Ameobapo 48.3 24 0.0017 24.1 6.3 56 81-143 7-63 (77)
5 d1zavu1 a.108.1.1 (U:1-30) Rib 33.7 8.7 0.00063 23.0 1.5 20 114-134 11-30 (30)
6 d1nkla_ a.64.1.1 (A:) NK-lysin 28.4 35 0.0026 23.0 4.4 56 81-142 6-61 (78)
7 d1q1va_ a.159.4.1 (A:) DEK C-t 27.0 57 0.0042 22.6 5.4 49 92-142 5-62 (70)
8 d1n69a_ a.64.1.3 (A:) Saposin 25.0 32 0.0023 23.6 3.6 26 116-141 36-62 (78)
9 d1t6sa1 a.4.5.60 (A:1-85) Segr 24.5 71 0.0052 22.3 5.7 47 100-179 6-52 (85)
10 d1sxjc1 a.80.1.1 (C:239-333) R 19.4 44 0.0032 23.6 3.5 42 44-86 7-48 (95)
No 1
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.46 E-value=20 Score=24.16 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=39.1
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHhcHHHHHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP-DLLQIKNLFSAKYGKEFVLAVS 142 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlp-EL~~IR~~f~~KYGkeFv~~a~ 142 (328)
.|+.+...+.-+-..+.--.++.+++..+ |..+| ++...-+.|+..||..++....
T Consensus 6 ~C~~~v~~~~~~l~~~~t~~~I~~~l~~~------C~~lp~~~~~~C~~~v~~y~~~ii~~l~ 62 (78)
T d2gtga1 6 VCEFLVKEVTKLIDNNKTEKEILDAFDKM------CSKLPKSLSEECQEVVDTYGSSILSILL 62 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH------TTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHH------HHhCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 57777776654444344344566665553 55677 5899999999999999998764
No 2
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.69 E-value=15 Score=25.18 Aligned_cols=63 Identities=10% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP-DLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTII 155 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlp-EL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv 155 (328)
-|++++..+.-+-..+. -.++.+++..+ |..+| .+......|+..||..++..... .++|..|
T Consensus 6 tC~~vv~~ve~l~~n~t-~~~I~~~l~~~------C~~lp~~~~~~C~~lv~~Y~~~ii~~l~~-----~~~P~~I 69 (74)
T d1l9la_ 6 TCLTIVQKLKKMVDKPT-QRSVSNAATRV------CRTGRSRWRDVCRNFMRRYQSRVIQGLVA-----GETAQQI 69 (74)
T ss_dssp HHHHHHHHHHHHCSSCC-HHHHHHHHHHG------GGSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHH
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHhH------HHHCCHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHH
Confidence 47777777765543221 24555555443 56777 58999999999999999887653 4566443
No 3
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=53.16 E-value=53 Score=26.47 Aligned_cols=78 Identities=24% Similarity=0.183 Sum_probs=65.3
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchhc
Q 020278 15 AKCKTSLTLGISRMKLLQNKRELQLQQMRKEIAQFLQAGQEPIARIRVEHVIREQ--NICAAYAVLELFCEFLLARVPIL 92 (328)
Q Consensus 15 sK~Kt~LkLaisRL~lLq~Kr~~~~k~~RrDIA~LL~~Gk~e~AriRVE~lIrEd--n~ieayEiLElyCElLl~R~~lI 92 (328)
..+|..+--...||.+-|+-.+.+-.+.+.|||.||... .-.|-..+|+++.|- ++-|+-|+|+.--+-|.+.+--|
T Consensus 40 apLkySVaeifd~Idl~QR~mDeQQ~~Vk~eIA~LL~qd-W~~AI~~Ce~LL~eTs~tLRELqdtL~aagd~lqa~Ll~I 118 (163)
T d1t98a2 40 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 118 (163)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeHHHHHhhhhHHHHhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 346777777789999999999999999999999999875 466888999999874 66899999999888888877655
Q ss_pred c
Q 020278 93 E 93 (328)
Q Consensus 93 e 93 (328)
+
T Consensus 119 Q 119 (163)
T d1t98a2 119 Q 119 (163)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=48.25 E-value=24 Score=24.11 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHhcHHHHHHHHh
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLP-DLLQIKNLFSAKYGKEFVLAVSE 143 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlp-EL~~IR~~f~~KYGkeFv~~a~e 143 (328)
.|++++..+.-+...+. -.++.+++..+ |..+| .+...-..|..+||..++.....
T Consensus 7 ~C~~~v~~~~~l~~~~t-~~~I~~~l~~~------C~~lp~~~~~~C~~~v~~y~~~ii~~l~~ 63 (77)
T d1of9a_ 7 LCTGLINTLENLLTTKG-ADKVKDYISSL------CNKASGFIATLCTKVLDFGIDKLIQLIED 63 (77)
T ss_dssp HHHHHHHHHHHHCSSSC-SHHHHHHHHHH------HTTCSSTTHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc-HHHHHHHHHHH------HHHCChHHHHHhHHHHHHHHHHHHHHHHH
Confidence 58888887766554443 34677777664 34454 67899999999999999988654
No 5
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.69 E-value=8.7 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=17.3
Q ss_pred CCCCCchhHHHHHHHHHHHhc
Q 020278 114 PRCSDLPDLLQIKNLFSAKYG 134 (328)
Q Consensus 114 pR~~dlpEL~~IR~~f~~KYG 134 (328)
.++ .+.||..+-++|..|||
T Consensus 11 ekl-tvaelaelvk~ledkfg 30 (30)
T d1zavu1 11 EKL-TVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHS-BHHHHHHHHHHHHHHTC
T ss_pred HHh-hHHHHHHHHHHHHhhcC
Confidence 345 78899999999999998
No 6
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.37 E-value=35 Score=22.97 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHhhchhcccCCCCChHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHH
Q 020278 81 FCEFLLARVPILESQKECPTEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVS 142 (328)
Q Consensus 81 yCElLl~R~~lIe~~kecP~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~ 142 (328)
.|++++..+.-+-..+.--.++..++-.+.- .+|-+...-..|..+||..++....
T Consensus 6 ~C~~~v~~~~~~l~~~~t~~~I~~~l~~~C~------~lp~~~~~C~~~v~~y~~~ii~~l~ 61 (78)
T d1nkla_ 6 SCRKIIQKLEDMVGPQPNEDTVTQAASQVCD------KLKILRGLCKKIMRSFLRRISWDIL 61 (78)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------HSCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCccHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666554444444567777666542 3345677899999999999988764
No 7
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.99 E-value=57 Score=22.63 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=32.3
Q ss_pred cccCCCCC--hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHh-c------HHHHHHHH
Q 020278 92 LESQKECP--TEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKY-G------KEFVLAVS 142 (328)
Q Consensus 92 Ie~~kecP--~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KY-G------keFv~~a~ 142 (328)
+...+..| .+++++|..|+--+- +..+- ...||..|..+| | |.|+...+
T Consensus 5 ~~~~k~~ptd~ei~~~i~~IL~~aD-L~tvT-~K~IR~~LE~~~~g~dL~~rK~~I~~~I 62 (70)
T d1q1va_ 5 IKKLKKPPTDEELKETIKKLLASAN-LEEVT-MKQICKKVYENYPTYDLTERKDFIKTTV 62 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHTTSC-GGGCC-HHHHHHHHHHHCSSSCCSHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHhCC-HHHhh-HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 34444444 588999999875443 32333 489999999999 7 55555443
No 8
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.01 E-value=32 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCCch-hHHHHHHHHHHHhcHHHHHHH
Q 020278 116 CSDLP-DLLQIKNLFSAKYGKEFVLAV 141 (328)
Q Consensus 116 ~~dlp-EL~~IR~~f~~KYGkeFv~~a 141 (328)
|.-+| .+...-..|+.+||..++...
T Consensus 36 C~~lp~~~~~~C~~~V~~y~~~ii~~l 62 (78)
T d1n69a_ 36 CDRLGPGMADICKNYISQYSEIAIQMM 62 (78)
T ss_dssp GGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHhHHHHHHHHHHHHHHH
Confidence 44455 788999999999999998764
No 9
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=24.51 E-value=71 Score=22.25 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHhcHHHHHHHHhcCCCCCccHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 020278 100 TEMREAVASIIFAAPRCSDLPDLLQIKNLFSAKYGKEFVLAVSELRPDSSVNRTIIEKLSVSAPSSEARLKVLKEIAQEH 179 (328)
Q Consensus 100 ~eLkEAIsSIIyAApR~~dlpEL~~IR~~f~~KYGkeFv~~a~e~~~~~~Vn~~iv~KLs~~~Ps~elv~~yL~EIA~ey 179 (328)
.+++.+|=+|+|||.+==.+.+|. ++-...++...+...|.++..+|
T Consensus 6 ~~l~~~IEAlLFas~~Pls~~~L~---------------------------------~~l~~~~~~~~i~~~l~~L~~~y 52 (85)
T d1t6sa1 6 QQLLRSLEALIFSSEEPVNLQTLS---------------------------------QITAHKFTPSELQEAVDELNRDY 52 (85)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHH---------------------------------HHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHH---------------------------------HHHccCCCHHHHHHHHHHHHHHH
Confidence 467788888999988721443432 22122355677888888888877
No 10
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.36 E-value=44 Score=23.56 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020278 44 KEIAQFLQAGQEPIARIRVEHVIREQNICAAYAVLELFCEFLL 86 (328)
Q Consensus 44 rDIA~LL~~Gk~e~AriRVE~lIrEdn~ieayEiLElyCElLl 86 (328)
++|-+.+.+|..+.|+..+..++.++ =..+.+||..+-+.+.
T Consensus 7 ~~il~~~l~~~f~~a~~~l~~l~~~~-G~s~~dIl~~l~~~i~ 48 (95)
T d1sxjc1 7 KAVLKSILEDDWGTAHYTLNKVRSAK-GLALIDLIEGIVKILE 48 (95)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 56788888999999999999987763 3456777777777653
Done!