Query 020279
Match_columns 328
No_of_seqs 195 out of 1491
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 2.8E-94 6.1E-99 647.4 29.3 314 1-327 6-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 2.9E-51 6.3E-56 369.1 19.2 226 6-251 83-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 7.5E-18 1.6E-22 121.3 7.1 66 15-90 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 3.2E-17 7E-22 118.0 8.2 66 258-323 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 1.8E-14 4E-19 99.0 5.6 53 38-90 1-53 (53)
6 smart00335 ANX Annexin repeats 99.5 1.3E-13 2.8E-18 94.7 6.0 53 271-323 1-53 (53)
7 PF13766 ECH_C: 2-enoyl-CoA Hy 68.9 15 0.00033 29.2 5.7 49 201-249 35-91 (118)
8 PF13758 Prefoldin_3: Prefoldi 48.1 1.3E+02 0.0027 23.3 7.3 45 7-61 25-74 (99)
9 KOG2875 8-oxoguanine DNA glyco 44.0 2.7E+02 0.0058 25.8 11.3 107 204-317 165-282 (323)
10 COG5173 SEC6 Exocyst complex s 39.6 1.6E+02 0.0034 30.0 8.1 169 42-239 294-478 (742)
11 PF13720 Acetyltransf_11: Udp 39.1 98 0.0021 22.8 5.3 26 125-150 27-54 (83)
12 PF14003 YlbE: YlbE-like prote 38.4 40 0.00087 23.8 2.9 35 201-236 13-47 (65)
13 KOG0859 Synaptobrevin/VAMP-lik 34.2 93 0.002 27.2 5.0 49 209-257 75-123 (217)
14 COG5173 SEC6 Exocyst complex s 30.8 6E+02 0.013 26.0 12.7 79 115-199 292-371 (742)
15 PF14003 YlbE: YlbE-like prote 29.9 67 0.0015 22.7 2.9 33 279-312 16-48 (65)
16 KOG2286 Exocyst complex subuni 29.5 4.2E+02 0.0091 27.7 9.7 208 95-327 235-450 (667)
17 cd00171 Sec7 Sec7 domain; Doma 29.5 1.7E+02 0.0037 25.0 6.1 55 10-78 31-88 (185)
18 PF11159 DUF2939: Protein of u 27.9 1.2E+02 0.0026 22.8 4.3 50 251-308 8-57 (95)
19 KOG0859 Synaptobrevin/VAMP-lik 27.5 3E+02 0.0065 24.1 7.0 66 126-192 75-141 (217)
20 KOG2171 Karyopherin (importin) 24.6 1E+03 0.022 26.5 12.8 57 82-141 5-63 (1075)
21 PF01992 vATP-synt_AC39: ATP s 23.4 5.6E+02 0.012 23.6 9.0 48 257-306 172-220 (337)
22 PRK14605 ruvA Holliday junctio 23.3 4.9E+02 0.011 22.5 7.9 47 36-84 80-133 (194)
23 PF09888 DUF2115: Uncharacteri 21.9 4.8E+02 0.011 21.9 8.7 75 118-192 9-90 (163)
24 PF13043 DUF3903: Domain of un 20.2 89 0.0019 19.3 1.8 17 288-304 9-25 (40)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-94 Score=647.43 Aligned_cols=314 Identities=39% Similarity=0.600 Sum_probs=307.7
Q ss_pred CccccCCCCCCChHHHHHHHHHHhccCcCCcCCccCCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhhhcHHHHHhhccc
Q 020279 1 MSTLKVPDLVPPPEQDAKRLKEAFDGLSKFSFSFLGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELS 80 (328)
Q Consensus 1 ~~~~~~~~~~~~~~~da~~L~~A~k~~~~~~~~~~g~gtde~~li~il~~rs~~qr~~i~~~Y~~~y~~~L~~~l~~els 80 (328)
|.+.++|.+.|+|..||+.|++||+ ||||||++||+||++|||+|||+|+++|+..||+||.++|++|||
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~k----------G~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELs 75 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMK----------GFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELS 75 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHh----------cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhC
Confidence 4566779999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCCHHHHHHHHHHHHhhhccCHHHHHHhhccchHHH
Q 020279 81 GDFKDAVIMWTLDPAERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRK 160 (328)
Q Consensus 81 G~~~~ll~~l~~~~~~~da~~L~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~sg~~~~ 160 (328)
|+|++++++|+.+|+++||..|++||+| .||||.++|||+|||||.|+++|+++|+..|++||++||.+++||+|++
T Consensus 76 G~Fe~~i~al~~~p~~~DA~~l~~amkg---~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frk 152 (321)
T KOG0819|consen 76 GDFERAIVALMKPPAEYDAKELKKAMKG---LGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRK 152 (321)
T ss_pred ccHHHHHHHHcCCHHHhHHHHHHHHHhc---cCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccccCHHHHHHHHHHHHHHhhcCCCChh-hHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhhhccCC
Q 020279 161 VLLRLVSSFRYDKELLDIEAAASEANQLHEAIKAKQLDHD-QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKG 239 (328)
Q Consensus 161 ll~~ll~~~r~e~~~vd~~~a~~dA~~L~~A~~g~~~~~~-~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG 239 (328)
+|+.++++.|+|...||..+|.+||+.|++|+++++++++ .|++||++||..||+.++++|++.+|+++++.|+++++|
T Consensus 153 lLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~g 232 (321)
T KOG0819|consen 153 LLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSG 232 (321)
T ss_pred HHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCc
Confidence 9999999999998899999999999999999999988555 899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCchhhHHHHHHhhccCCCCchHHHHHHHHhccHHHHHHHHHHHHhhhCCChHHhhhhcccHHHHHH
Q 020279 240 DLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDF 319 (328)
Q Consensus 240 ~~~~~Ll~lv~~~~~~~~~~A~~l~~Am~g~gtd~~~Liril~~r~~~dl~~Ik~~y~~~yg~~L~~~i~~~tsG~y~~~ 319 (328)
+++.+|++++.|++|||.|||+.||.||+|.|||+.+||||+|||+|+||..|+.+|+++||+||.++|+++|||||+++
T Consensus 233 d~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~ 312 (321)
T KOG0819|consen 233 DFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKA 312 (321)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 020279 320 LLTLTGSK 327 (328)
Q Consensus 320 ll~l~~~~ 327 (328)
||+|||++
T Consensus 313 LlaL~g~~ 320 (321)
T KOG0819|consen 313 LLALLGGD 320 (321)
T ss_pred HHHHhCCC
Confidence 99999975
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-51 Score=369.05 Aligned_cols=226 Identities=31% Similarity=0.393 Sum_probs=216.8
Q ss_pred CCCCCCChHHHHHHHHHHhccCcCCcCCccCCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhhhcHHHHHhhcccccHHH
Q 020279 6 VPDLVPPPEQDAKRLKEAFDGLSKFSFSFLGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKD 85 (328)
Q Consensus 6 ~~~~~~~~~~da~~L~~A~k~~~~~~~~~~g~gtde~~li~il~~rs~~qr~~i~~~Y~~~y~~~L~~~l~~elsG~~~~ 85 (328)
|--+.||+++||++|++||| |+||||.+||||||+|||.|+.+|+++|+..|+++|+++|.+++||+|++
T Consensus 83 ~al~~~p~~~DA~~l~~amk----------g~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frk 152 (321)
T KOG0819|consen 83 VALMKPPAEYDAKELKKAMK----------GLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRK 152 (321)
T ss_pred HHHcCCHHHhHHHHHHHHHh----------ccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHH
Confidence 34567899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC-----------CcHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCCHHHHHHHHHHHHhhhccCHHHHHHhhc
Q 020279 86 AVIMWTLD-----------PAERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVV 154 (328)
Q Consensus 86 ll~~l~~~-----------~~~~da~~L~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~ 154 (328)
+|+.|+.+ .+..||..|++|...+ +|||+..++.|||+||..||+++.+.|+..+|+++++.|+.++
T Consensus 153 lLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k--~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~ 230 (321)
T KOG0819|consen 153 LLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKK--WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEF 230 (321)
T ss_pred HHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhh--ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhcc
Confidence 99999852 3789999999999997 9999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCccccCHHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhh
Q 020279 155 SMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDIS 234 (328)
Q Consensus 155 sg~~~~ll~~ll~~~r~e~~~vd~~~a~~dA~~L~~A~~g~~~~~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~ 234 (328)
+|+++.+|++++.|.|+++ .++|+.||.||+|.|+++.+||||+++||+.+|..|+.+|+++||++|..+|+
T Consensus 231 ~gd~~~~llaiv~c~~n~~--------~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~ 302 (321)
T KOG0819|consen 231 SGDFEKLLLAIVKCIRNPP--------AYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIK 302 (321)
T ss_pred CchHHHHHHHHHHHHcCHH--------HHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHh
Confidence 9999999999999999875 89999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHh
Q 020279 235 SVGKGDLVSLMKMVILC 251 (328)
Q Consensus 235 ~e~sG~~~~~Ll~lv~~ 251 (328)
..+||||+++|+++++.
T Consensus 303 ~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 303 GDTSGDYKKALLALLGG 319 (321)
T ss_pred hhccchHHHHHHHHhCC
Confidence 99999999999999853
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.73 E-value=7.5e-18 Score=121.30 Aligned_cols=66 Identities=36% Similarity=0.601 Sum_probs=63.3
Q ss_pred HHHHHHHHHhccCcCCcCCccCCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhhhhcHHHHHhhcccccHHHHHHHH
Q 020279 15 QDAKRLKEAFDGLSKFSFSFLGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 90 (328)
Q Consensus 15 ~da~~L~~A~k~~~~~~~~~~g~gtde~~li~il~~rs~~qr~~i~~~Y~~~y~~~L~~~l~~elsG~~~~ll~~l 90 (328)
+||+.|++|++ |+|+||..+++|+++||+.|++.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~----------~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALK----------GWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHS----------SSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHcc----------CCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 58999999999 9999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.71 E-value=3.2e-17 Score=118.00 Aligned_cols=66 Identities=36% Similarity=0.637 Sum_probs=63.5
Q ss_pred hHHHHHHhhccCCCCchHHHHHHHHhccHHHHHHHHHHHHhhhCCChHHhhhhcccHHHHHHHHHh
Q 020279 258 HFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 323 (328)
Q Consensus 258 ~~A~~l~~Am~g~gtd~~~Liril~~r~~~dl~~Ik~~y~~~yg~~L~~~i~~~tsG~y~~~ll~l 323 (328)
+||+.|+.||+|+|+|+..|++|+++|++.++..|+++|++.||++|+++|++++||||+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.52 E-value=1.8e-14 Score=98.96 Aligned_cols=53 Identities=43% Similarity=0.680 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHhHhhhhhcHHHHHhhcccccHHHHHHHH
Q 020279 38 GTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 90 (328)
Q Consensus 38 gtde~~li~il~~rs~~qr~~i~~~Y~~~y~~~L~~~l~~elsG~~~~ll~~l 90 (328)
||||..|++|+++||+.||+.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.46 E-value=1.3e-13 Score=94.71 Aligned_cols=53 Identities=40% Similarity=0.702 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHhccHHHHHHHHHHHHhhhCCChHHhhhhcccHHHHHHHHHh
Q 020279 271 GTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 323 (328)
Q Consensus 271 gtd~~~Liril~~r~~~dl~~Ik~~y~~~yg~~L~~~i~~~tsG~y~~~ll~l 323 (328)
|||+..|++|+++|++.|+..|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999975
No 7
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=68.89 E-value=15 Score=29.17 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=39.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhhhcc--------CCcHHHHHHHHH
Q 020279 201 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVG--------KGDLVSLMKMVI 249 (328)
Q Consensus 201 ~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~--------sG~~~~~Ll~lv 249 (328)
...+.|.++||.-+..++..+++..+.+|.+.++.|+ .|||..++.+++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4567788899999999999999999999999998774 688888777765
No 8
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=48.14 E-value=1.3e+02 Score=23.25 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=36.5
Q ss_pred CCCCCChHHHHHHHHHHhccCcCCcCCccCCCCCHHHHHHHHcC-----CCHHHHHHHHH
Q 020279 7 PDLVPPPEQDAKRLKEAFDGLSKFSFSFLGLGTDEKAVTWVLSQ-----RTASQRQLIRQ 61 (328)
Q Consensus 7 ~~~~~~~~~da~~L~~A~k~~~~~~~~~~g~gtde~~li~il~~-----rs~~qr~~i~~ 61 (328)
|...+++..|...+++-++ |-..+++.|-+||+. ||++|...+..
T Consensus 25 ~~~~~~~~e~l~~i~r~f~----------g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 25 PEDDDATREDLLRIRRDFG----------GSLVTEKEIKEILGEGQGITRTREQVVDVLS 74 (99)
T ss_pred cccCCCCHHHHHHHHHhcC----------cccccHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 4434577888899999998 888999999999988 88888876643
No 9
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=44.04 E-value=2.7e+02 Score=25.84 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=68.5
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhhCCCHHHhhhhccCCcHHHHHHHHHHhhcCchhhHHHHHHhhccCCCCchHHHHHHHH
Q 020279 204 HILAT-RNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAII 282 (328)
Q Consensus 204 ~il~~-rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv~~~~~~~~~~A~~l~~Am~g~gtd~~~Liril~ 282 (328)
+-|.. -.++||++..=-|+.+|=..=..+|.++-.| ++++..++..+--.|..--..+.|+|+.=...|-.+.
T Consensus 165 ~~L~g~~~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g~------~~wLqsl~~~~yeear~~L~~lpGVG~KVADCI~Lm~ 238 (323)
T KOG2875|consen 165 QALAGPEVEAELRKLGFGYRAKYISATARALQEKQGG------LAWLQSLRKSSYEEAREALCSLPGVGPKVADCICLMS 238 (323)
T ss_pred HHhcCcHhHHHHHHcCcchhHHHHHHHHHHHHHhccc------chHHHHHhcccHHHHHHHHhcCCCCcchHhhhhhhhh
Confidence 33443 3688888888888888866666666666555 5555666665555566667778999999888887775
Q ss_pred hc------cHHHHHHHHHHHHhhhC----CChHHhhhhcccHHHH
Q 020279 283 TR------AEVDMKLIKEVYPIMYK----NTLEDDVIGDTSGDYQ 317 (328)
Q Consensus 283 ~r------~~~dl~~Ik~~y~~~yg----~~L~~~i~~~tsG~y~ 317 (328)
.. -++.+-+|.+-| -..| +.|..-|.+++++-|+
T Consensus 239 l~~~~~VPVDvHi~ria~~y-~l~~~~g~k~l~~ki~~ev~~~f~ 282 (323)
T KOG2875|consen 239 LDKLSAVPVDVHIWRIAQDY-ILPGLSGAKELTPKINGEVSNFFR 282 (323)
T ss_pred cCCCCcccchhhHHHHhhcc-cCCCccccccCCcchhHHHHHHHH
Confidence 42 245667888877 2332 2355555555554333
No 10
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=39.63 E-value=1.6e+02 Score=30.01 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhhhhhcHHHHHhhcccccHHHHHHHHc-------CCCcHHHHHHHHHHHhcCCCCCC
Q 020279 42 KAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWT-------LDPAERDAKMAKEALKKSKSGVK 114 (328)
Q Consensus 42 ~~li~il~~rs~~qr~~i~~~Y~~~y~~~L~~~l~~elsG~~~~ll~~l~-------~~~~~~da~~L~~A~~g~~~~gt 114 (328)
..+-+.+....|... -|.+.|...|.+.|.+.+.++.+-.....+.... ++-.+.++-....+++|. .+.
T Consensus 294 ~~i~e~i~~~~pp~~-NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~--l~d 370 (742)
T COG5173 294 SFIRENISLSFPPFD-NILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGR--LLD 370 (742)
T ss_pred HHHHHHccccCCchH-HHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhccc--ccC
Confidence 345566666666655 6889999999999999888887665544432221 233455555566666664 554
Q ss_pred cHH-HHHHHhhcCCHHHHHHHHHHHHhhhccCHHHHHHhhccchHHHHHHHHHhhhcCCcc-------ccCHHHHHHHHH
Q 020279 115 HLQ-VIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKE-------LLDIEAAASEAN 186 (328)
Q Consensus 115 de~-~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~sg~~~~ll~~ll~~~r~e~~-------~vd~~~a~~dA~ 186 (328)
+|. .| .+.|......-+.+.+..-+...+...+ .|+++. .+-++-+.. -+
T Consensus 371 ~e~g~L---------------~~~Yt~l~~~Kl~EWv~nl~~~evd~F~------~R~~ep~~Dsdg~l~l~Gt~~~-fQ 428 (742)
T COG5173 371 NETGEL---------------LEKYTKLAQEKLKEWVMNLTRIEVDKFY------ARNEEPSRDSDGKLVLPGTVSL-FQ 428 (742)
T ss_pred CcchHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCcCCCcCccCccHHHH-HH
Confidence 443 22 2556665555555544332222222211 232211 122222221 11
Q ss_pred HHHHHhhcC-CCChhhHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhhhccCC
Q 020279 187 QLHEAIKAK-QLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKG 239 (328)
Q Consensus 187 ~L~~A~~g~-~~~~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG 239 (328)
.+...++-- +++...++-|+ .+|+..+...|++.....|.+.+++.++|
T Consensus 429 mitqQ~e~ia~tn~sdvvgiV----~~~i~~~~tk~q~~wks~l~ee~~kq~~~ 478 (742)
T COG5173 429 MITQQLEPIAFTNRSDVVGIV----FAHITRTITKYQEIWKSNLVEEMDKQFKS 478 (742)
T ss_pred HHHHHhhhhhcCCccchhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222211 23333333333 34567777788887777788887776644
No 11
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.06 E-value=98 Score=22.84 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHhhhcc--CHHHHH
Q 020279 125 ASSPYHLAAVRQAYCALFDC--SIEEDI 150 (328)
Q Consensus 125 ~rs~~~l~~i~~~Y~~~y~~--~L~~~I 150 (328)
+-|++++.+|+++|+..|.. ++++.+
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~ 54 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEAL 54 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34689999999999999954 444444
No 12
>PF14003 YlbE: YlbE-like protein
Probab=38.39 E-value=40 Score=23.82 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhhhc
Q 020279 201 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSV 236 (328)
Q Consensus 201 ~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e 236 (328)
.+.++| +|+|.++.+.-.++...|++++-+.|++-
T Consensus 13 ~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 13 IWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 455555 57799999999999999999999999873
No 13
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=93 Score=27.15 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhhhCCCHHHhhhhccCCcHHHHHHHHHHhhcCchh
Q 020279 209 RNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPER 257 (328)
Q Consensus 209 rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv~~~~~~~~ 257 (328)
++..-|..|.+.|.+.||.....++.-.+..+|...|..-+....+.|.
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 3577799999999999999999999988888888888777765554444
No 14
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=30.82 E-value=6e+02 Score=26.03 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=50.4
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHhhhccCHHHHHHhhccchHH-HHHHHHHhhhcCCccccCHHHHHHHHHHHHHHhh
Q 020279 115 HLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLR-KVLLRLVSSFRYDKELLDIEAAASEANQLHEAIK 193 (328)
Q Consensus 115 de~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~sg~~~-~ll~~ll~~~r~e~~~vd~~~a~~dA~~L~~A~~ 193 (328)
|-..+-|.+..+.|+++. |...|...|.+.|..-+.++.+.... -..+.++...|+-. +-.+.++.-...+++
T Consensus 292 dL~~i~e~i~~~~pp~~N-I~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~-----~t~e~~f~f~~dev~ 365 (742)
T COG5173 292 DLSFIRENISLSFPPFDN-ILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYY-----NTIESKFNFIADEVG 365 (742)
T ss_pred HHHHHHHHccccCCchHH-HHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-----HHHHHhCCccHHHhc
Confidence 445677888888888886 67899999999999888887654432 34555666555332 222444444555555
Q ss_pred cCCCCh
Q 020279 194 AKQLDH 199 (328)
Q Consensus 194 g~~~~~ 199 (328)
|.-.|.
T Consensus 366 ~~l~d~ 371 (742)
T COG5173 366 GRLLDN 371 (742)
T ss_pred ccccCC
Confidence 543433
No 15
>PF14003 YlbE: YlbE-like protein
Probab=29.88 E-value=67 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHhccHHHHHHHHHHHHhhhCCChHHhhhhcc
Q 020279 279 RAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDT 312 (328)
Q Consensus 279 ril~~r~~~dl~~Ik~~y~~~yg~~L~~~i~~~t 312 (328)
|+| +|.+.++.....++...|+++.-+.|..-.
T Consensus 16 R~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 16 RIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 444 699999999999999999999999998653
No 16
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.52 E-value=4.2e+02 Score=27.74 Aligned_cols=208 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCCHHHHHHHHHHHHhhhccCHHHHHHhhcc-chHHHHHHHHHhhhcCCc
Q 020279 95 AERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVS-MPLRKVLLRLVSSFRYDK 173 (328)
Q Consensus 95 ~~~da~~L~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~s-g~~~~ll~~ll~~~r~e~ 173 (328)
...+...++..+.- |-..+.+.+.-+.|+++. |..+|-..|...|..-+...-| ..+..-.+.++.-.++
T Consensus 235 ~~~~~e~~r~~i~E------dL~~~~~~l~~cfpp~~~-if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~-- 305 (667)
T KOG2286|consen 235 QVRLLEVLRFVIRE------DLRVAKRVLVPCFPPHYN-IFSAYLELYHQALSDLLRDLASEALELREILQLLAWVRN-- 305 (667)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhhcccCCchhH-HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--
Q ss_pred cccCHHHHHHHHHHHHHHhhcCCCChhhHHHHHhcCCHHHHHHHHHHHHhhhCCCHHHhhhhccCCcHHHHHHHHH----
Q 020279 174 ELLDIEAAASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVI---- 249 (328)
Q Consensus 174 ~~vd~~~a~~dA~~L~~A~~g~~~~~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv---- 249 (328)
..........+..+....... .+.|+.++.+.|-+....++.+-+..-++-+........-
T Consensus 306 -~~~~~~l~~~~~~~~~l~p~l--------------~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd 370 (667)
T KOG2286|consen 306 -EYYTPLLQLNVDVLRALGPLL--------------RPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRD 370 (667)
T ss_pred -HhcChhhhccchhhhhhcCcc--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q ss_pred ---HhhcCchhhHHHHHHhhccCCCCchHHHHHHHHhccHHHHHHHHHHHHhhhCCChHHhhhhcccHHHHHHHHHhhcC
Q 020279 250 ---LCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGS 326 (328)
Q Consensus 250 ---~~~~~~~~~~A~~l~~Am~g~gtd~~~Liril~~r~~~dl~~Ik~~y~~~yg~~L~~~i~~~tsG~y~~~ll~l~~~ 326 (328)
.+..+-|.-+..++...+.........|.-.+..-+-..++...+-|.+.+-...+.. +.+.++.|..+++|..++
T Consensus 371 ~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~ 449 (667)
T KOG2286|consen 371 EEGYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINN 449 (667)
T ss_pred ccccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhc
Q ss_pred C
Q 020279 327 K 327 (328)
Q Consensus 327 ~ 327 (328)
.
T Consensus 450 ~ 450 (667)
T KOG2286|consen 450 N 450 (667)
T ss_pred h
No 17
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=29.51 E-value=1.7e+02 Score=25.04 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHhccCcCCcCCccCCCCCHHHHHHHHcCCCHHHHHHHHHHhHhhh---hhcHHHHHhhc
Q 020279 10 VPPPEQDAKRLKEAFDGLSKFSFSFLGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLY---NESLIDNITSE 78 (328)
Q Consensus 10 ~~~~~~da~~L~~A~k~~~~~~~~~~g~gtde~~li~il~~rs~~qr~~i~~~Y~~~y---~~~L~~~l~~e 78 (328)
.++|..-|+-|+.. . |.|...|-+.|+... +-...+.+.|-..| |.++.+.|+.-
T Consensus 31 ~~~~~~iA~fl~~~-~------------~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~~ 88 (185)
T cd00171 31 DDSPKEIAKFLYET-E------------GLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRKF 88 (185)
T ss_pred CCCHHHHHHHHHhC-C------------CCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 34777778888775 4 679999999999987 45578888899887 67787777763
No 18
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=27.89 E-value=1.2e+02 Score=22.78 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=37.0
Q ss_pred hhcCchhhHHHHHHhhccCCCCchHHHHHHHHhccHHHHHHHHHHHHhhhCCChHHhh
Q 020279 251 CIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDV 308 (328)
Q Consensus 251 ~~~~~~~~~A~~l~~Am~g~gtd~~~Liril~~r~~~dl~~Ik~~y~~~yg~~L~~~i 308 (328)
+..-.|.+-...|.+|++. .|-..|.+.+ |++.|++..++.....+...+
T Consensus 8 ~~~~sPy~al~~i~~Ai~~--~D~~~l~~~V------D~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 8 YYAASPYYALYQIRQAIQA--HDAAALARYV------DFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HHHHCHHHHHHHHHHHHHH--cCHHHHHHHc------CHHHHHHHHHHHHHHHHHhhc
Confidence 3344667789999999988 6777777665 777788877777766776666
No 19
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.53 E-value=3e+02 Score=24.10 Aligned_cols=66 Identities=6% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhhhccCHHHHHHhhccchHHHHHHHHHhhhcCCccccC-HHHHHHHHHHHHHHh
Q 020279 126 SSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLD-IEAAASEANQLHEAI 192 (328)
Q Consensus 126 rs~~~l~~i~~~Y~~~y~~~L~~~I~~e~sg~~~~ll~~ll~~~r~e~~~vd-~~~a~~dA~~L~~A~ 192 (328)
+.-.-|.+|++.|.+.||.....++.-.+...|.+.|..-+...-+.+. +| ...++..+.+++.-|
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM 141 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVM 141 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHH
Confidence 3467899999999999999988887776666676766665555443333 33 344555555555544
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.58 E-value=1e+03 Score=26.53 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=32.0
Q ss_pred cHHHHHHHHcCCC--cHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 020279 82 DFKDAVIMWTLDP--AERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCAL 141 (328)
Q Consensus 82 ~~~~ll~~l~~~~--~~~da~~L~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~ 141 (328)
.|..++..+..+- .-.+|+...+-.-+ .-.--..|..|+.+..+++.|++....-++
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rk 63 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAK---TEPLLPALAHILATSADPQVRQLAAVLLRK 63 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhc---ccchHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4666666665533 33344444443333 111224577788888888888776655544
No 21
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=23.45 E-value=5.6e+02 Score=23.55 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=28.8
Q ss_pred hhHHHHHHhhccCCCCchHHHHHHHHhccHHHHHHHHHHHHhh-hCCChHH
Q 020279 257 RHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIM-YKNTLED 306 (328)
Q Consensus 257 ~~~A~~l~~Am~g~gtd~~~Liril~~r~~~dl~~Ik~~y~~~-yg~~L~~ 306 (328)
.|+...+..+.+-.|++...+.+++. .++|+.+|+-.|+-+ ||.+-+.
T Consensus 172 ~yy~~~~~~~~~~~~~~~~~l~~~~~--~~iD~~Ni~~~~R~k~~~~~~~~ 220 (337)
T PF01992_consen 172 RYYEDLLKAAKKLSGSEREILRELLG--MEIDLTNIKTILRAKKYGLSPEE 220 (337)
T ss_dssp HHHHHHHHHHH---TSS-HHHHHHHH--HHHHHHHHHHHHHTTTS---GGG
T ss_pred HHHHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCHhh
Confidence 45677777776333456655557775 568999999999843 6766544
No 22
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.28 E-value=4.9e+02 Score=22.47 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHcCCCHHH-HHHH-HHHhHhhh-----hhcHHHHHhhcccccHH
Q 020279 36 GLGTDEKAVTWVLSQRTASQ-RQLI-RQAYQRLY-----NESLIDNITSELSGDFK 84 (328)
Q Consensus 36 g~gtde~~li~il~~rs~~q-r~~i-~~~Y~~~y-----~~~L~~~l~~elsG~~~ 84 (328)
|.|. +.-..||.+.++++ +..| .+....+. |+--.+.|--|+++.+.
T Consensus 80 GIGp--K~Al~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtAerIilELk~Ki~ 133 (194)
T PRK14605 80 GIGP--KLGLAMLSAMNAEALASAIISGNAELLSTIPGIGKKTASRIVLELKDKIA 133 (194)
T ss_pred CCCH--HHHHHHHHhCCHHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 6665 67789999999999 5666 33333332 34455555555655554
No 23
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=21.88 E-value=4.8e+02 Score=21.91 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=42.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHh-------hhccCHHHHHHhhccchHHHHHHHHHhhhcCCccccCHHHHHHHHHHHHH
Q 020279 118 VIVEISCASSPYHLAAVRQAYCA-------LFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLHE 190 (328)
Q Consensus 118 ~lieIl~~rs~~~l~~i~~~Y~~-------~y~~~L~~~I~~e~sg~~~~ll~~ll~~~r~e~~~vd~~~a~~dA~~L~~ 190 (328)
.|-+.+..-|..+|..|+..... .|...+...+...+.+.+.++..+--.+.-.+...+|..........+.+
T Consensus 9 ~Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 88 (163)
T PF09888_consen 9 ILKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIED 88 (163)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHHH
Confidence 34455666788888888777666 46666666666666655555544222222222234666665555555544
Q ss_pred Hh
Q 020279 191 AI 192 (328)
Q Consensus 191 A~ 192 (328)
..
T Consensus 89 ~~ 90 (163)
T PF09888_consen 89 GC 90 (163)
T ss_pred hh
Confidence 43
No 24
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=20.21 E-value=89 Score=19.32 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhCCCh
Q 020279 288 DMKLIKEVYPIMYKNTL 304 (328)
Q Consensus 288 dl~~Ik~~y~~~yg~~L 304 (328)
-++.++.+-++.||++|
T Consensus 9 ai~kvr~eckrrfgktl 25 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHHHHHHhchhh
Confidence 35688899999999997
Done!