Query 020280
Match_columns 328
No_of_seqs 370 out of 1598
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 1.6E-32 5.6E-37 242.3 10.4 177 138-316 1-193 (193)
2 3hcs_A TNF receptor-associated 99.9 5.3E-24 1.8E-28 183.9 4.2 123 83-210 16-145 (170)
3 3hct_A TNF receptor-associated 99.7 2.7E-17 9.1E-22 133.5 3.5 88 83-173 16-110 (118)
4 3knv_A TNF receptor-associated 99.6 1.9E-17 6.6E-22 138.7 -2.5 86 83-171 29-131 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.6 9.6E-17 3.3E-21 129.7 -0.1 86 84-172 22-115 (116)
6 1t1h_A Gspef-atpub14, armadill 99.0 4.3E-11 1.5E-15 89.3 0.3 59 83-142 6-71 (78)
7 2egp_A Tripartite motif-contai 99.0 2.7E-10 9.1E-15 84.9 3.7 56 83-139 10-78 (79)
8 3ztg_A E3 ubiquitin-protein li 99.0 6E-11 2.1E-15 91.3 -0.0 61 83-144 11-81 (92)
9 2ecv_A Tripartite motif-contai 98.9 7.2E-10 2.5E-14 83.4 4.8 56 83-139 17-84 (85)
10 1bor_A Transcription factor PM 98.9 5.7E-10 1.9E-14 78.2 3.0 46 83-129 4-49 (56)
11 2ecw_A Tripartite motif-contai 98.9 5.8E-10 2E-14 83.9 3.3 56 83-139 17-84 (85)
12 2djb_A Polycomb group ring fin 98.9 7.9E-10 2.7E-14 81.2 3.4 47 83-129 13-62 (72)
13 2kr4_A Ubiquitin conjugation f 98.8 2.5E-10 8.7E-15 87.0 -0.3 58 83-141 12-75 (85)
14 2yur_A Retinoblastoma-binding 98.8 1.4E-09 4.8E-14 80.3 3.5 45 83-128 13-63 (74)
15 2ecy_A TNF receptor-associated 98.8 1.1E-09 3.7E-14 79.0 2.8 46 83-129 13-62 (66)
16 1wgm_A Ubiquitin conjugation f 98.8 7.2E-10 2.5E-14 86.8 1.4 59 83-142 20-85 (98)
17 2ysl_A Tripartite motif-contai 98.8 2.4E-09 8E-14 78.5 4.1 46 83-129 18-69 (73)
18 2d8t_A Dactylidin, ring finger 98.8 2E-09 6.8E-14 78.8 3.5 45 83-128 13-60 (71)
19 2y43_A E3 ubiquitin-protein li 98.8 2.8E-10 9.4E-15 88.9 -1.5 60 83-142 20-85 (99)
20 3fl2_A E3 ubiquitin-protein li 98.8 3.7E-10 1.3E-14 91.8 -0.9 57 83-140 50-114 (124)
21 2kre_A Ubiquitin conjugation f 98.8 1.2E-09 4.1E-14 85.8 2.0 59 83-142 27-91 (100)
22 2csy_A Zinc finger protein 183 98.8 2.6E-09 8.8E-14 80.2 3.3 45 83-128 13-60 (81)
23 3lrq_A E3 ubiquitin-protein li 98.8 4.8E-10 1.6E-14 87.9 -0.8 47 83-129 20-70 (100)
24 4ayc_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 90.5 1.3 45 84-129 52-99 (138)
25 1z6u_A NP95-like ring finger p 98.7 7E-10 2.4E-14 93.5 -1.0 58 83-141 76-141 (150)
26 2ckl_A Polycomb group ring fin 98.7 9.5E-10 3.3E-14 87.2 -0.4 47 83-129 13-62 (108)
27 1jm7_B BARD1, BRCA1-associated 98.7 1.1E-09 3.6E-14 88.3 -0.2 58 83-140 20-81 (117)
28 3ng2_A RNF4, snurf, ring finge 98.7 3.6E-09 1.2E-13 77.0 2.1 47 83-129 8-63 (71)
29 2ysj_A Tripartite motif-contai 98.7 9.6E-09 3.3E-13 73.2 4.0 40 83-123 18-63 (63)
30 2ct2_A Tripartite motif protei 98.7 9.1E-09 3.1E-13 78.0 3.8 46 83-129 13-68 (88)
31 2ea6_A Ring finger protein 4; 98.7 5.9E-09 2E-13 75.3 2.6 46 83-128 13-67 (69)
32 3l11_A E3 ubiquitin-protein li 98.6 5.6E-09 1.9E-13 83.6 1.6 45 83-128 13-61 (115)
33 1jm7_A BRCA1, breast cancer ty 98.6 4.4E-09 1.5E-13 83.5 1.0 56 84-140 20-84 (112)
34 1g25_A CDK-activating kinase a 98.6 5.7E-09 1.9E-13 74.9 1.2 45 84-128 2-54 (65)
35 2yu4_A E3 SUMO-protein ligase 98.6 2E-09 6.7E-14 83.5 -1.4 59 83-142 5-79 (94)
36 2c2l_A CHIP, carboxy terminus 98.6 3.7E-09 1.3E-13 96.7 0.2 59 83-142 206-271 (281)
37 1chc_A Equine herpes virus-1 r 98.6 1.6E-08 5.6E-13 72.9 3.6 45 85-129 5-52 (68)
38 2xeu_A Ring finger protein 4; 98.6 6.2E-09 2.1E-13 74.0 1.1 46 84-129 2-56 (64)
39 2ckl_B Ubiquitin ligase protei 98.6 3.9E-09 1.3E-13 90.0 -0.4 59 84-142 53-119 (165)
40 2ecj_A Tripartite motif-contai 98.6 2E-08 6.7E-13 70.1 3.0 40 83-123 13-58 (58)
41 1e4u_A Transcriptional repress 98.6 1.9E-08 6.4E-13 75.4 2.4 47 83-129 9-62 (78)
42 1iym_A EL5; ring-H2 finger, ub 98.5 4E-08 1.4E-12 67.8 3.2 44 84-128 4-54 (55)
43 2ecm_A Ring finger and CHY zin 98.5 3.7E-08 1.3E-12 67.9 3.0 45 84-128 4-54 (55)
44 2f42_A STIP1 homology and U-bo 98.5 1.1E-08 3.9E-13 88.3 -0.3 59 83-142 104-169 (179)
45 1x4j_A Ring finger protein 38; 98.5 6.2E-08 2.1E-12 71.4 3.5 46 83-128 21-71 (75)
46 2ect_A Ring finger protein 126 98.5 6.1E-08 2.1E-12 71.9 3.3 46 84-129 14-64 (78)
47 2ecn_A Ring finger protein 141 98.5 2.6E-08 9E-13 72.3 1.1 45 83-129 13-60 (70)
48 4ic3_A E3 ubiquitin-protein li 98.5 2.7E-08 9.3E-13 73.5 1.1 43 85-129 24-67 (74)
49 2ep4_A Ring finger protein 24; 98.5 7.4E-08 2.5E-12 70.7 3.4 47 83-129 13-64 (74)
50 2kiz_A E3 ubiquitin-protein li 98.5 5.8E-08 2E-12 70.3 2.7 45 85-129 14-63 (69)
51 2ecg_A Baculoviral IAP repeat- 98.4 4.8E-08 1.7E-12 72.2 1.6 43 85-129 25-68 (75)
52 4ap4_A E3 ubiquitin ligase RNF 98.4 5.5E-08 1.9E-12 78.9 1.2 46 83-129 5-60 (133)
53 2l0b_A E3 ubiquitin-protein li 98.4 9.1E-08 3.1E-12 73.4 2.2 44 84-128 39-88 (91)
54 2ecl_A Ring-box protein 2; RNF 98.3 4.7E-07 1.6E-11 68.0 3.4 47 82-128 12-75 (81)
55 2ea5_A Cell growth regulator w 98.2 5.6E-07 1.9E-11 65.4 3.4 45 83-129 13-58 (68)
56 1v87_A Deltex protein 2; ring- 98.2 4.8E-07 1.6E-11 71.9 2.8 47 83-129 23-94 (114)
57 3htk_C E3 SUMO-protein ligase 98.2 1.7E-07 5.8E-12 85.1 0.1 57 83-139 179-245 (267)
58 4ap4_A E3 ubiquitin ligase RNF 98.1 5.1E-07 1.7E-11 73.2 1.5 47 82-129 69-125 (133)
59 2yho_A E3 ubiquitin-protein li 98.1 5.4E-07 1.8E-11 67.4 1.2 43 85-129 18-61 (79)
60 2vje_A E3 ubiquitin-protein li 98.1 8.4E-07 2.9E-11 63.6 1.5 46 83-128 6-56 (64)
61 2yuc_A TNF receptor-associated 98.0 1.5E-06 5.2E-11 64.1 2.3 62 138-205 11-73 (76)
62 2y1n_A E3 ubiquitin-protein li 98.0 1.6E-06 5.5E-11 83.2 2.6 44 85-129 332-379 (389)
63 3t6p_A Baculoviral IAP repeat- 98.0 2.7E-06 9.3E-11 80.8 3.0 45 83-129 293-338 (345)
64 2bay_A PRE-mRNA splicing facto 98.0 2.1E-06 7.1E-11 61.0 1.6 44 85-129 3-50 (61)
65 2vje_B MDM4 protein; proto-onc 97.9 2.5E-06 8.7E-11 60.8 1.7 44 85-128 7-55 (63)
66 3dpl_R Ring-box protein 1; ubi 97.9 3.2E-06 1.1E-10 66.8 2.2 48 82-129 34-101 (106)
67 1wim_A KIAA0161 protein; ring 97.8 6.3E-06 2.2E-10 63.3 1.8 43 84-126 4-61 (94)
68 2yuc_A TNF receptor-associated 97.8 8.4E-06 2.9E-10 60.0 2.4 50 159-209 2-51 (76)
69 4a0k_B E3 ubiquitin-protein li 97.7 5.7E-06 2E-10 66.5 0.4 47 82-128 45-111 (117)
70 2yre_A F-box only protein 30; 97.6 1.3E-05 4.5E-10 62.0 1.5 51 143-196 37-89 (100)
71 3vk6_A E3 ubiquitin-protein li 97.6 4.7E-05 1.6E-09 58.8 4.2 82 87-202 3-89 (101)
72 2yre_A F-box only protein 30; 97.5 1E-05 3.5E-10 62.6 -0.7 40 138-177 59-98 (100)
73 2ct0_A Non-SMC element 1 homol 96.8 0.00098 3.3E-08 49.0 3.9 43 85-128 15-63 (74)
74 2d8s_A Cellular modulator of i 96.6 0.0011 3.7E-08 49.4 2.6 46 83-129 13-70 (80)
75 3hcs_A TNF receptor-associated 96.2 0.00085 2.9E-08 56.8 0.3 74 118-197 83-159 (170)
76 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0014 4.9E-08 61.6 1.3 44 85-128 308-372 (381)
77 2d9k_A FLN29 gene product; zin 96.0 0.0007 2.4E-08 49.4 -1.0 50 141-196 15-64 (75)
78 2d9k_A FLN29 gene product; zin 94.5 0.012 4.1E-07 42.7 1.5 47 160-209 3-50 (75)
79 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.016 5.4E-07 44.4 1.6 32 84-115 2-35 (101)
80 1vyx_A ORF K3, K3RING; zinc-bi 92.4 0.075 2.6E-06 37.0 2.6 46 83-128 4-58 (60)
81 2ct7_A Ring finger protein 31; 91.3 0.2 6.8E-06 37.4 4.1 34 83-116 23-61 (86)
82 3nw0_A Non-structural maintena 91.2 0.099 3.4E-06 46.7 2.7 44 84-128 179-228 (238)
83 1z60_A TFIIH basal transcripti 87.7 0.25 8.6E-06 34.3 2.0 37 87-123 17-58 (59)
84 2eod_A TNF receptor-associated 87.3 0.24 8.2E-06 34.0 1.7 54 143-201 10-64 (66)
85 2ko5_A Ring finger protein Z; 84.6 0.28 9.6E-06 37.2 1.0 42 85-128 28-72 (99)
86 2cup_A Skeletal muscle LIM-pro 84.2 0.55 1.9E-05 35.4 2.6 46 83-128 31-77 (101)
87 3hct_A TNF receptor-associated 83.6 0.31 1.1E-05 38.1 0.9 28 172-199 81-108 (118)
88 2cs3_A Protein C14ORF4, MY039 83.5 0.72 2.5E-05 33.9 2.7 34 83-116 13-49 (93)
89 1wfp_A Zinc finger (AN1-like) 82.7 2.6 9E-05 30.4 5.4 42 85-126 25-66 (74)
90 1wg2_A Zinc finger (AN1-like) 81.8 1.6 5.5E-05 30.7 3.9 42 85-126 15-56 (64)
91 1wfh_A Zinc finger (AN1-like) 78.4 2.9 9.8E-05 29.4 4.3 41 85-125 15-55 (64)
92 2jmo_A Parkin; IBR, E3 ligase, 77.6 1.8 6E-05 31.7 3.2 40 84-125 24-75 (80)
93 2xqn_T Testin, TESS; metal-bin 77.0 1.1 3.7E-05 35.2 2.1 46 83-128 28-74 (126)
94 2jne_A Hypothetical protein YF 76.1 0.82 2.8E-05 34.8 1.0 38 86-128 33-72 (101)
95 1rmd_A RAG1; V(D)J recombinati 76.0 0.95 3.3E-05 35.0 1.4 50 143-196 58-111 (116)
96 2eod_A TNF receptor-associated 75.9 1.6 5.4E-05 29.6 2.5 38 166-206 3-40 (66)
97 1weo_A Cellulose synthase, cat 75.2 2.1 7.1E-05 32.1 3.0 44 85-128 16-69 (93)
98 1wff_A Riken cDNA 2810002D23 p 74.2 6.4 0.00022 29.2 5.4 40 85-125 25-66 (85)
99 1wfl_A Zinc finger protein 216 72.8 6.8 0.00023 28.3 5.1 41 86-126 26-66 (74)
100 3knv_A TNF receptor-associated 72.2 0.94 3.2E-05 36.8 0.6 25 172-196 103-128 (141)
101 1iml_A CRIP, cysteine rich int 71.0 2.7 9.1E-05 29.8 2.7 45 83-127 25-71 (76)
102 1z2q_A LM5-1; membrane protein 70.7 2.7 9.2E-05 30.9 2.7 36 80-115 16-54 (84)
103 2yw8_A RUN and FYVE domain-con 70.3 2.9 0.0001 30.6 2.9 37 80-116 14-53 (82)
104 1joc_A EEA1, early endosomal a 68.9 2 6.9E-05 34.2 1.8 36 81-116 65-103 (125)
105 1x4u_A Zinc finger, FYVE domai 65.6 3.3 0.00011 30.4 2.3 36 80-115 9-47 (84)
106 1m3v_A FLIN4, fusion of the LI 65.0 2.9 9.8E-05 32.7 2.0 46 83-128 30-80 (122)
107 3m62_A Ubiquitin conjugation f 64.7 1.2 4.3E-05 47.1 -0.3 59 83-142 889-954 (968)
108 2fiy_A Protein FDHE homolog; F 64.7 5.4 0.00018 36.8 4.0 42 85-126 182-231 (309)
109 3lqh_A Histone-lysine N-methyl 64.3 4.4 0.00015 34.5 3.1 42 87-128 4-65 (183)
110 2gli_A Protein (five-finger GL 64.3 3.5 0.00012 32.6 2.4 54 143-198 97-154 (155)
111 1x61_A Thyroid receptor intera 63.2 2.3 7.9E-05 29.7 1.0 40 83-122 31-70 (72)
112 1x68_A FHL5 protein; four-and- 61.4 5 0.00017 28.3 2.6 39 83-121 33-72 (76)
113 3t7l_A Zinc finger FYVE domain 61.3 3.6 0.00012 30.7 1.8 36 81-116 16-54 (90)
114 1x3c_A Zinc finger protein 292 60.8 5.4 0.00019 28.7 2.6 30 171-200 25-55 (73)
115 1we9_A PHD finger family prote 60.3 3 0.0001 28.8 1.2 32 83-114 4-38 (64)
116 2jtn_A LIM domain-binding prot 60.3 4.2 0.00014 34.0 2.3 45 83-128 85-130 (182)
117 2jrp_A Putative cytoplasmic pr 60.1 3.5 0.00012 30.3 1.5 38 86-128 3-42 (81)
118 2xjy_A Rhombotin-2; oncoprotei 60.0 3.2 0.00011 32.6 1.5 46 83-128 27-77 (131)
119 2dlk_A Novel protein; ZF-C2H2 59.9 3.2 0.00011 28.7 1.3 62 144-207 8-73 (79)
120 2rpc_A Zinc finger protein ZIC 59.8 3.4 0.00012 32.8 1.6 114 83-201 23-149 (155)
121 2yt9_A Zinc finger-containing 58.3 2.1 7.1E-05 30.9 -0.0 28 172-201 64-92 (95)
122 2rgt_A Fusion of LIM/homeobox 57.7 5.1 0.00018 33.1 2.4 45 83-128 31-76 (169)
123 1weu_A Inhibitor of growth fam 56.9 27 0.00094 26.0 6.1 44 82-126 33-85 (91)
124 2wbs_A Krueppel-like factor 4; 56.5 7.5 0.00026 27.3 2.9 28 172-199 34-62 (89)
125 2d8z_A Four and A half LIM dom 56.4 5.3 0.00018 27.6 1.9 34 83-116 29-62 (70)
126 1x4w_A Hypothetical protein FL 56.2 5.5 0.00019 28.2 1.9 41 85-125 15-58 (67)
127 1rut_X Flinc4, fusion protein 54.2 3.2 0.00011 35.0 0.5 46 83-128 30-80 (188)
128 1vfy_A Phosphatidylinositol-3- 53.9 7.1 0.00024 27.7 2.3 29 87-115 13-44 (73)
129 1wd2_A Ariadne-1 protein homol 53.3 4.3 0.00015 28.0 1.0 30 86-116 7-44 (60)
130 2cur_A Skeletal muscle LIM-pro 52.6 5.4 0.00019 27.4 1.5 34 83-116 29-62 (69)
131 2dmd_A Zinc finger protein 64, 52.5 6.1 0.00021 28.3 1.8 28 171-200 62-90 (96)
132 2dar_A PDZ and LIM domain prot 52.3 7.2 0.00024 28.5 2.2 34 83-116 49-82 (90)
133 1a7i_A QCRP2 (LIM1); LIM domai 52.2 5.6 0.00019 28.4 1.5 42 83-124 32-74 (81)
134 2gmg_A Hypothetical protein PF 52.1 5.6 0.00019 30.7 1.5 23 101-127 69-94 (105)
135 1y02_A CARP2, FYVE-ring finger 52.0 6.5 0.00022 31.1 2.0 35 82-116 16-53 (120)
136 1x4l_A Skeletal muscle LIM-pro 50.7 6.6 0.00023 27.2 1.7 34 83-116 33-66 (72)
137 2gli_A Protein (five-finger GL 50.6 2.7 9.1E-05 33.3 -0.6 63 142-206 66-132 (155)
138 2eln_A Zinc finger protein 406 49.9 10 0.00036 23.0 2.3 25 172-196 8-33 (38)
139 1b8t_A Protein (CRP1); LIM dom 49.2 8.9 0.0003 32.3 2.5 45 83-127 140-185 (192)
140 1wyh_A SLIM 2, skeletal muscle 49.0 7.1 0.00024 27.0 1.6 33 84-116 32-64 (72)
141 2cu8_A Cysteine-rich protein 2 48.5 8.6 0.00029 27.0 2.0 33 84-116 35-68 (76)
142 1sp2_A SP1F2; zinc finger, tra 48.3 14 0.0005 20.0 2.7 24 173-196 2-26 (31)
143 2vrw_B P95VAV, VAV1, proto-onc 47.9 12 0.00041 35.2 3.5 42 80-122 352-397 (406)
144 1wfk_A Zinc finger, FYVE domai 47.0 9.5 0.00032 28.3 2.1 30 86-115 10-42 (88)
145 1x4k_A Skeletal muscle LIM-pro 46.9 7 0.00024 27.0 1.3 34 83-116 31-64 (72)
146 1zfd_A SWI5; DNA binding motif 46.1 20 0.00069 19.4 3.1 25 172-196 2-27 (32)
147 1wig_A KIAA1808 protein; LIM d 46.0 7.9 0.00027 27.1 1.4 34 83-116 29-63 (73)
148 2d8x_A Protein pinch; LIM doma 45.6 7.5 0.00026 26.7 1.3 34 83-116 29-62 (70)
149 2jr6_A UPF0434 protein NMA0874 45.4 9.1 0.00031 27.1 1.7 28 83-113 6-33 (68)
150 2iyb_E Testin, TESS, TES; LIM 45.4 8.3 0.00029 26.2 1.5 34 83-116 30-64 (65)
151 1dvp_A HRS, hepatocyte growth 44.7 9.1 0.00031 33.1 1.9 31 86-116 162-195 (220)
152 1nyp_A Pinch protein; LIM doma 44.5 8.2 0.00028 26.2 1.3 32 84-115 30-61 (66)
153 2dmi_A Teashirt homolog 3; zin 43.6 7.8 0.00027 28.9 1.2 28 172-201 79-107 (115)
154 2egq_A FHL1 protein; LIM domai 43.5 8.3 0.00028 27.0 1.2 31 85-115 46-76 (77)
155 3mjh_B Early endosome antigen 43.4 6.8 0.00023 23.9 0.6 16 84-99 4-19 (34)
156 2k16_A Transcription initiatio 43.2 11 0.00039 26.6 1.9 45 83-127 16-69 (75)
157 3i2d_A E3 SUMO-protein ligase 42.9 9.8 0.00034 35.9 2.0 44 85-128 249-299 (371)
158 1g47_A Pinch protein; LIM doma 42.3 10 0.00034 26.5 1.5 32 85-116 39-70 (77)
159 1wen_A Inhibitor of growth fam 42.2 36 0.0012 24.0 4.4 43 83-126 14-65 (71)
160 4fo9_A E3 SUMO-protein ligase 41.4 11 0.00039 35.3 2.1 44 85-128 215-265 (360)
161 2ehe_A Four and A half LIM dom 41.2 11 0.00036 26.9 1.5 32 85-116 43-74 (82)
162 2cor_A Pinch protein; LIM doma 40.5 14 0.00048 26.2 2.1 33 83-116 39-71 (79)
163 1wep_A PHF8; structural genomi 40.3 18 0.00062 25.9 2.7 44 83-127 10-64 (79)
164 3zyq_A Hepatocyte growth facto 39.9 13 0.00045 32.4 2.2 29 87-115 166-197 (226)
165 1wil_A KIAA1045 protein; ring 39.5 15 0.0005 27.2 2.0 32 85-116 15-47 (89)
166 3pwf_A Rubrerythrin; non heme 39.1 13 0.00043 31.1 1.9 26 84-126 137-162 (170)
167 2d8y_A Eplin protein; LIM doma 38.7 15 0.0005 26.8 2.0 38 84-121 41-79 (91)
168 1x3h_A Leupaxin; paxillin fami 38.7 15 0.0005 25.9 2.0 34 83-116 39-72 (80)
169 2jny_A Uncharacterized BCR; st 38.6 13 0.00046 26.1 1.6 28 83-113 8-35 (67)
170 2ebt_A Krueppel-like factor 5; 38.6 12 0.0004 26.9 1.5 23 172-196 74-97 (100)
171 2dlq_A GLI-kruppel family memb 38.0 8.4 0.00029 28.8 0.5 107 85-201 7-121 (124)
172 2zet_C Melanophilin; complex, 37.1 16 0.00056 29.9 2.2 41 85-125 68-116 (153)
173 1b8t_A Protein (CRP1); LIM dom 37.0 14 0.00046 31.1 1.8 44 83-126 32-76 (192)
174 4ayb_P DNA-directed RNA polyme 36.7 24 0.00083 23.0 2.5 26 104-129 9-35 (48)
175 2cuq_A Four and A half LIM dom 35.3 16 0.00054 25.7 1.6 33 84-116 40-72 (80)
176 1zbd_B Rabphilin-3A; G protein 35.2 16 0.00053 29.4 1.7 30 86-116 56-90 (134)
177 2epa_A Krueppel-like factor 10 34.8 23 0.00079 23.7 2.4 51 143-195 17-70 (72)
178 2a25_A Ubiquitin ligase SIAH1; 34.1 11 0.00038 32.0 0.7 46 123-168 16-61 (193)
179 1ncs_A Peptide M30F, transcrip 34.1 17 0.00059 22.3 1.5 26 171-196 16-42 (47)
180 2dlo_A Thyroid receptor-intera 33.7 16 0.00054 25.9 1.4 34 83-116 39-73 (81)
181 1ubd_C Protein (YY1 zinc finge 33.2 25 0.00087 26.2 2.7 84 118-206 6-96 (124)
182 2js4_A UPF0434 protein BB2007; 32.5 18 0.00061 25.7 1.5 28 83-113 6-33 (70)
183 3mpx_A FYVE, rhogef and PH dom 32.3 9.5 0.00032 36.1 0.0 36 80-115 370-408 (434)
184 2drp_A Protein (tramtrack DNA- 32.2 16 0.00056 23.9 1.2 51 143-199 10-65 (66)
185 3f6q_B LIM and senescent cell 32.0 15 0.0005 25.1 1.0 10 87-96 13-22 (72)
186 1wfe_A Riken cDNA 2310008M20 p 31.9 29 0.001 25.6 2.6 38 84-122 24-64 (86)
187 3o70_A PHD finger protein 13; 31.5 15 0.0005 25.8 0.9 32 83-115 17-50 (68)
188 1wjp_A Zinc finger protein 295 31.2 2 6.9E-05 32.0 -4.1 27 172-200 68-95 (107)
189 2lv9_A Histone-lysine N-methyl 30.7 37 0.0013 25.4 3.1 39 86-125 29-75 (98)
190 2hf1_A Tetraacyldisaccharide-1 30.5 19 0.00065 25.4 1.3 27 83-112 6-32 (68)
191 2dj7_A Actin-binding LIM prote 30.3 25 0.00084 25.0 2.0 30 85-115 42-71 (80)
192 1bhi_A CRE-BP1, ATF-2; CRE bin 30.1 32 0.0011 19.5 2.2 26 172-197 5-31 (38)
193 1j2o_A FLIN2, fusion of rhombo 30.1 23 0.00078 27.0 1.9 42 83-124 28-72 (114)
194 2lo3_A SAGA-associated factor 30.0 29 0.00098 22.1 1.9 21 180-200 22-42 (44)
195 1x4v_A Hypothetical protein LO 29.9 27 0.00094 24.2 2.0 36 86-122 13-51 (63)
196 2ee8_A Protein ODD-skipped-rel 29.4 14 0.00047 26.9 0.5 27 172-200 72-99 (106)
197 2e72_A POGO transposable eleme 29.4 35 0.0012 22.3 2.3 29 172-202 11-40 (49)
198 1zw8_A Zinc-responsive transcr 29.2 34 0.0012 23.3 2.5 26 173-198 38-64 (64)
199 1x63_A Skeletal muscle LIM-pro 29.0 17 0.00059 25.6 0.9 32 85-116 43-74 (82)
200 1va1_A Transcription factor SP 28.7 35 0.0012 19.4 2.2 25 172-196 7-32 (37)
201 1x64_A Alpha-actinin-2 associa 28.3 20 0.00067 25.9 1.2 29 86-114 52-80 (89)
202 2ab3_A ZNF29; zinc finger prot 28.1 31 0.0011 17.8 1.8 24 173-196 2-26 (29)
203 1f2i_G Fusion of N-terminal 17 28.0 24 0.00081 23.6 1.5 49 143-195 19-70 (73)
204 1wee_A PHD finger family prote 27.9 22 0.00075 24.9 1.3 31 83-114 14-47 (72)
205 2pk7_A Uncharacterized protein 27.7 19 0.00066 25.4 1.0 27 83-112 6-32 (69)
206 2ent_A Krueppel-like factor 15 27.4 31 0.001 20.8 1.9 27 172-198 11-38 (48)
207 1wys_A Riken cDNA 2310008M20 p 26.6 37 0.0013 24.4 2.3 37 86-123 15-54 (75)
208 2gvi_A Conserved hypothetical 26.5 26 0.00088 30.0 1.7 31 85-115 172-202 (204)
209 2i13_A AART; DNA binding, zinc 26.1 16 0.00054 29.9 0.3 115 84-208 20-139 (190)
210 1x62_A C-terminal LIM domain p 26.0 14 0.00046 26.2 -0.1 29 86-114 42-70 (79)
211 6rxn_A Rubredoxin; electron tr 25.6 58 0.002 21.0 2.9 14 84-97 3-16 (46)
212 1a1h_A QGSR zinc finger peptid 25.2 31 0.0011 23.9 1.8 61 143-207 4-67 (90)
213 1tf6_A Protein (transcription 25.2 21 0.00071 29.1 0.9 15 84-98 11-27 (190)
214 3vhs_A ATPase wrnip1; zinc fin 25.0 10 0.00034 21.5 -0.7 20 174-195 7-26 (29)
215 2ctd_A Zinc finger protein 512 24.2 14 0.00047 27.2 -0.4 46 153-200 40-88 (96)
216 2kn9_A Rubredoxin; metalloprot 24.1 71 0.0024 23.3 3.5 40 82-126 24-69 (81)
217 2elz_A Zinc finger protein 224 24.0 49 0.0017 19.7 2.4 28 172-201 11-39 (46)
218 2epz_A Zinc finger protein 28 23.9 44 0.0015 19.9 2.1 28 172-201 11-39 (46)
219 2eq4_A Zinc finger protein 224 23.9 45 0.0015 19.8 2.2 29 172-202 11-40 (46)
220 2kpi_A Uncharacterized protein 23.8 27 0.00091 23.6 1.1 23 83-110 8-30 (56)
221 2g6q_A Inhibitor of growth pro 23.7 23 0.00079 24.3 0.7 41 83-124 9-58 (62)
222 2jvx_A NF-kappa-B essential mo 23.6 27 0.00093 20.2 0.9 13 85-97 3-15 (28)
223 2d8v_A Zinc finger FYVE domain 23.5 36 0.0012 23.8 1.7 29 85-116 8-38 (67)
224 2m0e_A Zinc finger and BTB dom 23.4 58 0.002 16.4 2.4 23 173-197 2-25 (29)
225 1klr_A Zinc finger Y-chromosom 23.4 60 0.002 16.6 2.4 25 173-199 2-27 (30)
226 2jp9_A Wilms tumor 1; DNA bind 23.3 58 0.002 23.7 3.1 64 143-208 6-72 (119)
227 1lpv_A Doublesex protein; tran 23.3 11 0.00036 25.3 -1.0 26 157-184 17-42 (52)
228 2ely_A Zinc finger protein 224 23.3 56 0.0019 19.4 2.5 29 172-202 11-40 (46)
229 2co8_A NEDD9 interacting prote 22.8 33 0.0011 24.4 1.5 32 85-116 42-75 (82)
230 1wjv_A Cell growth regulating 22.7 14 0.00049 26.9 -0.5 46 143-194 10-56 (79)
231 2eov_A Zinc finger protein 484 22.7 49 0.0017 19.6 2.2 28 172-201 11-39 (46)
232 1rik_A E6APC1 peptide; E6-bind 22.6 59 0.002 16.6 2.3 22 173-196 2-24 (29)
233 2ytm_A Zinc finger protein 28 22.6 45 0.0015 19.9 2.0 29 172-202 11-40 (46)
234 2j7j_A Transcription factor II 22.4 44 0.0015 22.6 2.1 48 152-199 8-58 (85)
235 2emk_A Zinc finger protein 28 22.1 52 0.0018 19.6 2.2 28 172-201 11-39 (46)
236 2ytn_A Zinc finger protein 347 22.1 58 0.002 19.3 2.4 29 171-201 10-39 (46)
237 2ri7_A Nucleosome-remodeling f 21.8 20 0.00067 29.6 0.1 43 83-126 6-59 (174)
238 3o7a_A PHD finger protein 13 v 21.7 26 0.0009 22.9 0.7 28 86-114 5-34 (52)
239 2eop_A Zinc finger protein 268 21.6 56 0.0019 19.3 2.3 28 172-201 11-39 (46)
240 1g70_B RSG-1.2 peptide; peptid 21.4 12 0.0004 20.6 -0.9 16 10-25 4-19 (26)
241 2ytq_A Zinc finger protein 268 21.4 54 0.0019 19.5 2.2 28 172-201 11-39 (46)
242 2ytr_A Zinc finger protein 347 21.4 50 0.0017 19.5 2.0 28 172-201 11-39 (46)
243 2eme_A Zinc finger protein 473 21.4 50 0.0017 19.6 2.0 28 172-201 11-39 (46)
244 1faq_A RAF-1; transferase, ser 21.4 45 0.0015 21.4 1.8 35 85-120 14-49 (52)
245 2enn_A NPKC-theta, protein kin 21.3 54 0.0019 23.2 2.4 37 85-121 34-74 (77)
246 2em0_A Zinc finger protein 224 21.2 53 0.0018 19.5 2.1 28 172-201 11-39 (46)
247 1fv5_A First zinc finger of U- 21.0 49 0.0017 19.7 1.8 28 172-201 7-35 (36)
248 2ep0_A Zinc finger protein 28 20.9 49 0.0017 19.6 1.9 28 172-201 11-39 (46)
249 1x6a_A LIMK-2, LIM domain kina 20.9 35 0.0012 23.9 1.3 34 83-116 39-74 (81)
250 3ky9_A Proto-oncogene VAV; cal 20.8 48 0.0016 32.8 2.7 39 82-121 526-568 (587)
251 2vy4_A U11/U12 small nuclear r 20.7 71 0.0024 19.5 2.5 24 172-196 4-27 (37)
252 1pft_A TFIIB, PFTFIIBN; N-term 20.6 48 0.0016 21.3 1.8 27 85-114 5-32 (50)
253 2adr_A ADR1; transcription reg 20.5 56 0.0019 20.6 2.2 48 152-201 7-57 (60)
254 1ard_A Yeast transcription fac 20.5 76 0.0026 16.0 2.5 23 173-197 2-25 (29)
255 1bbo_A Human enhancer-binding 20.5 60 0.0021 20.1 2.3 44 153-198 7-53 (57)
256 2epw_A Zinc finger protein 268 20.5 52 0.0018 19.5 1.9 28 172-201 11-39 (46)
257 1yuz_A Nigerythrin; rubrythrin 20.3 47 0.0016 28.3 2.2 13 84-96 170-182 (202)
258 1paa_A Yeast transcription fac 20.3 68 0.0023 16.5 2.2 25 173-199 2-27 (30)
259 2eoq_A Zinc finger protein 224 20.3 57 0.0019 19.3 2.1 28 172-201 11-39 (46)
260 2ytg_A ZFP-95, zinc finger pro 20.0 49 0.0017 19.6 1.7 29 171-201 10-39 (46)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=99.97 E-value=1.6e-32 Score=242.27 Aligned_cols=177 Identities=22% Similarity=0.429 Sum_probs=105.6
Q ss_pred eeeeeeeecccCCCCCceEEeecccccccCCCCCCCccCCCCC--CCcccccchHhhHhhhhcCCCceeEEeceEEEEEE
Q 020280 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPD--CNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTL 215 (328)
Q Consensus 138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~g--C~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~~~~~l 215 (328)
++++++++|+|+.+||++.++|.++..||+.|+|+|+.||.+| |+|.|+.++|..|+...|+|...- .......+..
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~-~g~~i~f~~~ 79 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL-QGEDIVFLAT 79 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE-ESSEEEEEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee-cCceEEEEec
Confidence 3678999999999999999999999999999999999999977 999999999999999999984321 1111112233
Q ss_pred ec----CCcEEEEEeccCceEEEEeeccc--cccc---EEEEEeecC-CCCCCceEEEEEecCCCeEEEeeeeeeecccc
Q 020280 216 NV----KNRFIVLQEEGDGVLFILSSRSE--TLGH---VISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRV 285 (328)
Q Consensus 216 ~~----~~~~~vl~~~~d~~lFll~~~~~--~~g~---~vsV~cIgp-~~a~~f~Yel~~~~~~~~l~~~s~~~~i~~~~ 285 (328)
++ +.+|++++ .++|..|+|+.... +.|. +++|+|||| .+|++|+|+|++.+++++|+|+++++++.+..
T Consensus 80 ~~~l~~~~~~~~v~-~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~ 158 (193)
T 2a25_A 80 DINLPGAVDWVMMQ-SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI 158 (193)
T ss_dssp CCC----CEEEEEE-EETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCS
T ss_pred ccccccceeEEEEE-EecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcc
Confidence 32 23566555 57889999986544 3442 679999998 45789999999999999999999999986544
Q ss_pred CC-CCCcCeEEEcCc---ccCCCCceEEEEEEEec
Q 020280 286 DN-PPSTGFLLVPIE---SFGSSGDLKLELCIRRL 316 (328)
Q Consensus 286 ~~-~~~~~fL~VP~~---ll~~~~~l~l~V~I~~~ 316 (328)
.. .++.+||+||.. +|.+++.|+|+|+|+++
T Consensus 159 ~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~ 193 (193)
T 2a25_A 159 ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 193 (193)
T ss_dssp HHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred cccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence 33 456789999975 46777899999999875
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.88 E-value=5.3e-24 Score=183.88 Aligned_cols=123 Identities=24% Similarity=0.413 Sum_probs=113.0
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeeeeeecccCCCCCce
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESVKVTCRNSNYGCKV 155 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~n~~~GC~~ 155 (328)
.+.|.|+||++++.+|+ +++|||+||..|+.+| ...||.|+.++.. .++..+++++.+++|+|+|. ||+|
T Consensus 16 ~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~--GC~~ 92 (170)
T 3hcs_A 16 ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLH 92 (170)
T ss_dssp CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCST--TCCC
T ss_pred CCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCC--CCCc
Confidence 56899999999999998 6899999999999998 2489999999875 36788899999999999985 9999
Q ss_pred EEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEeceE
Q 020280 156 TMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEV 210 (328)
Q Consensus 156 ~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~ 210 (328)
.+++.++.+|++.|+|+++.|| +|++.+.+.+|..|+...|..+...+.|...
T Consensus 93 ~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~ 145 (170)
T 3hcs_A 93 KMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAA 145 (170)
T ss_dssp EEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTTTCC
T ss_pred eecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCCCCC
Confidence 9999999999999999999998 8999999999999999999999999988753
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.66 E-value=2.7e-17 Score=133.54 Aligned_cols=88 Identities=28% Similarity=0.489 Sum_probs=77.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeeeeeecccCCCCCce
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESVKVTCRNSNYGCKV 155 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~n~~~GC~~ 155 (328)
.+.+.|+||++++.+|+ +++|||+||..|+.+| ...||.|+.++.. .++..+++++.++++.|+| .||+|
T Consensus 16 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~~ 92 (118)
T 3hct_A 16 ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLH 92 (118)
T ss_dssp CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCCC
T ss_pred CCCCCCCcCChhhcCeE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCCC
Confidence 56789999999999998 6799999999999998 2489999999874 3678888999999999998 59999
Q ss_pred EEeecccccccCCCCCCC
Q 020280 156 TMSYGKKHDHEKICPHVP 173 (328)
Q Consensus 156 ~~~~~~~~~He~~C~~~~ 173 (328)
.+++.++++|+++|.+..
T Consensus 93 ~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 93 KMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp EEEGGGSGGGTSSSCC--
T ss_pred EEeeHHHHHHHHHchhhh
Confidence 999999999999998864
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.9e-17 Score=138.70 Aligned_cols=86 Identities=28% Similarity=0.560 Sum_probs=75.0
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCcc------------ccccccceeeeeeeeec
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGY------------NRCRAIEKVLESVKVTC 146 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~------------~r~~~le~~l~~l~v~C 146 (328)
.+.|.|+||++++.+|+ ++.|||+||..|+.+|. ..||.||.++.. .++..+++++.+++|+|
T Consensus 29 ~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~C 107 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVC 107 (141)
T ss_dssp CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEEC
T ss_pred CcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccccc
Confidence 56799999999999998 78999999999999982 389999987531 25677888999999999
Q ss_pred ccCCCCCceEEeeccccc-ccCCCCC
Q 020280 147 RNSNYGCKVTMSYGKKHD-HEKICPH 171 (328)
Q Consensus 147 ~n~~~GC~~~~~~~~~~~-He~~C~~ 171 (328)
+| .||.|.+.+.++++ |+..|+-
T Consensus 108 pn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 108 PS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp CS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred CC--CCCCCEeEHHHHHHHHHHHhHH
Confidence 99 59999999999998 9999864
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.59 E-value=9.6e-17 Score=129.65 Aligned_cols=86 Identities=26% Similarity=0.508 Sum_probs=75.9
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeeeeeeeecccCCCCCce
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLESVKVTCRNSNYGCKV 155 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v~C~n~~~GC~~ 155 (328)
+.+.|+||++++.+|+ +++|||+||..|+.+| ...||.|+.++.. ..+..+.+++..+++.|+|. ||+|
T Consensus 22 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~ 98 (116)
T 1rmd_A 22 KSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNE 98 (116)
T ss_dssp HHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCC
T ss_pred CCCCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcc
Confidence 4678999999999999 5899999999999988 3589999999764 23566788899999999997 9999
Q ss_pred EEeecccccccCCCCCC
Q 020280 156 TMSYGKKHDHEKICPHV 172 (328)
Q Consensus 156 ~~~~~~~~~He~~C~~~ 172 (328)
.+++.++.+|+++|.+.
T Consensus 99 ~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 99 EVSLEKYNHHVSSHKES 115 (116)
T ss_dssp EEEHHHHHHHHHTSCCC
T ss_pred hhhHhHHHHHHHHhhcc
Confidence 99999999999999874
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.00 E-value=4.3e-11 Score=89.28 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=48.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.+.||||++++.+|+ .++|||+||..|+.+| ...||.|+.++.. .+|..++++++.+
T Consensus 6 ~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccccCCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 45789999999999999 6799999999999988 2579999998763 3567776666543
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.97 E-value=2.7e-10 Score=84.91 Aligned_cols=56 Identities=29% Similarity=0.729 Sum_probs=45.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----------CCCCCCCCcCCcc---ccccccceee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----------MNKCPSCCTPIGY---NRCRAIEKVL 139 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----------~~~CP~Cr~~~~~---~r~~~le~~l 139 (328)
.+.+.|+||++.+.+|+ ..+|||.||..|+.+| ...||.|+..+.. .+|..+++++
T Consensus 10 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCEETTTTEECSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred ccCCCCcCCCcccCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 45789999999999999 5799999999999986 2479999998763 3566666554
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.97 E-value=6e-11 Score=91.29 Aligned_cols=61 Identities=21% Similarity=0.495 Sum_probs=48.5
Q ss_pred CCeeeeccccccccccccccc-CCeeecccchhccC-----CCCCCCCcCCc----cccccccceeeeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCE-NGHIACSTCCSKIM-----NKCPSCCTPIG----YNRCRAIEKVLESVKV 144 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~l~~l~v 144 (328)
.+.+.|+||+++|.+|+ +.+ |||+||..|+.+|. ..||.|+.++. ...|..+.++++.++-
T Consensus 11 ~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CTTTEETTTTEECSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CcCCCCCCCChhhcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 45789999999999999 577 99999999999882 58999999873 2456666666655543
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7.2e-10 Score=83.36 Aligned_cols=56 Identities=30% Similarity=0.675 Sum_probs=45.8
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---------CCCCCCCCcCCcc---ccccccceee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---------MNKCPSCCTPIGY---NRCRAIEKVL 139 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~~l 139 (328)
.+.+.|+||++.+.+|+ ..+|||.||..|+.+| ...||.|+..+.. .+|..+++++
T Consensus 17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred cCCCCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 45789999999999998 5799999999999887 3689999998763 3566666554
No 10
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=5.7e-10 Score=78.15 Aligned_cols=46 Identities=24% Similarity=0.482 Sum_probs=41.0
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+ ..+|||+||..|+.++...||.||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeE-EcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 45688999999999998 68999999999999887899999998753
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.90 E-value=5.8e-10 Score=83.90 Aligned_cols=56 Identities=29% Similarity=0.695 Sum_probs=45.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---------CCCCCCCCcCCcc---ccccccceee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---------MNKCPSCCTPIGY---NRCRAIEKVL 139 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~~l 139 (328)
.+.+.|+||++.+.+|+ ..+|||.||..|+.+| ...||.|+..+.. .+|..+++++
T Consensus 17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred ccCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 45689999999999999 6899999999999886 2479999998763 3566666554
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=7.9e-10 Score=81.19 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=40.8
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+....|||.||..|+.+| ...||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4578999999999999954589999999999988 4789999998764
No 13
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=2.5e-10 Score=86.97 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=47.7
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLES 141 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~ 141 (328)
++.|.||||+++|++|| ...|||+||..||.+| ...||.|+.++.. .+|..+.+++..
T Consensus 12 p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~ 75 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV-RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQA 75 (85)
T ss_dssp CTTTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred chheECcccCchhcCCe-ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHH
Confidence 55789999999999999 6789999999999998 4789999998763 356666555543
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=80.35 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=39.2
Q ss_pred CCeeeeccccccccccccccc-CCeeecccchhccC-----CCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCE-NGHIACSTCCSKIM-----NKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~~-----~~CP~Cr~~~~ 128 (328)
.+.+.|+||++++.+|+ +.+ |||+||..|+.+|. ..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 45789999999999999 577 99999999999982 58999999753
No 15
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=79.00 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=40.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+ +..|||.||..|+.+|. ..||.|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45789999999999999 57999999999999882 579999998753
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.82 E-value=7.2e-10 Score=86.77 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCeeeecccccccccccccccCC-eeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENG-HIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CG-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.|.||||+++|++|| ...|| |+||..||.+| ...||.|+.++.. .+|..|.+++..+
T Consensus 20 p~~~~CpI~~~~m~dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred cHhcCCcCccccccCCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 66899999999999999 68899 99999999998 3689999998863 4566666666554
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.4e-09 Score=78.52 Aligned_cols=46 Identities=39% Similarity=0.777 Sum_probs=39.9
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC------CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+ ...|||.||..|+.+|. ..||.|+.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEE-ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeE-EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45789999999999999 56999999999999984 279999998753
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2e-09 Score=78.80 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=39.7
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
.+.+.|+||++.+.+|+ ..+|||.||..|+.+| ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEE-EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCE-EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 45678999999999998 5799999999999988 368999999876
No 19
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=2.8e-10 Score=88.87 Aligned_cols=60 Identities=25% Similarity=0.709 Sum_probs=47.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
.+.+.|+||++.+.+|+...+|||.||..|+.+| ...||.|+..+.. .+|..++++++.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 3468999999999999843489999999999988 3689999998763 3566666655443
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.80 E-value=3.7e-10 Score=91.81 Aligned_cols=57 Identities=26% Similarity=0.618 Sum_probs=45.5
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLE 140 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~ 140 (328)
.+.+.|+||++++.+|+ ..+|||+||..|+.+| ...||.||.++.. ..|..+.+++.
T Consensus 50 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 50 EETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114 (124)
T ss_dssp HHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 45689999999999999 6799999999999888 2489999998864 34555555543
No 21
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=1.2e-09 Score=85.82 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.|.||||+++|++|| ..+|||+||..||.+| ...||.|+.++.. .+|..+.+++..+
T Consensus 27 p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp STTTBCTTTCSBCSSEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 56789999999999999 6789999999999998 3689999998763 3566666655443
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.6e-09 Score=80.19 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=39.9
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
.+.+.|+||++.+.+|+ ..+|||+||..|+.+| ...||.|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCee-EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34679999999999999 5899999999999988 468999999875
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.78 E-value=4.8e-10 Score=87.90 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=40.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---C-CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---M-NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~-~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++++..|+....|||+||..|+.+| . ..||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4568999999999999943789999999999998 3 589999998763
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.77 E-value=1.2e-09 Score=90.54 Aligned_cols=45 Identities=29% Similarity=0.576 Sum_probs=39.8
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
+.+.|+||++.+.+|+ .++|||.||..|+.+| ...||.||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEE-EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCce-ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3578999999999999 6799999999999998 4689999998763
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.75 E-value=7e-10 Score=93.49 Aligned_cols=58 Identities=28% Similarity=0.595 Sum_probs=46.8
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCccc----cccccceeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGYN----RCRAIEKVLES 141 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~~----r~~~le~~l~~ 141 (328)
.+.+.|+||++++.+|+ .++|||+||..|+.+|. ..||.|+.++... .|..+.+++..
T Consensus 76 ~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141 (150)
T ss_dssp HHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred ccCCEeecCChhhcCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 34689999999999999 58999999999999882 3799999998643 56666665543
No 26
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.74 E-value=9.5e-10 Score=87.21 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=40.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+....|||+||..|+.+| ...||.|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4578999999999999943499999999999998 4689999998764
No 27
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=1.1e-09 Score=88.29 Aligned_cols=58 Identities=29% Similarity=0.649 Sum_probs=45.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC-CCCCCCCcCCcc---ccccccceeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM-NKCPSCCTPIGY---NRCRAIEKVLE 140 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-~~CP~Cr~~~~~---~r~~~le~~l~ 140 (328)
.+.+.|+||++++.+|+...+|||+||..|+.+|. ..||.|+.++.. .+|..+.+++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHH
Confidence 44689999999999999433899999999999984 589999998753 34555555544
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.71 E-value=3.6e-09 Score=76.99 Aligned_cols=47 Identities=34% Similarity=0.794 Sum_probs=40.1
Q ss_pred CCeeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+ ....|||.||..|+.+| ...||.||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 45789999999999882 36789999999999998 4789999998763
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=9.6e-09 Score=73.18 Aligned_cols=40 Identities=43% Similarity=0.893 Sum_probs=35.1
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC------CCCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSC 123 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~C 123 (328)
.+.+.|+||++.+.+|+ ..+|||+||..|+.+|. ..||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45789999999999999 57999999999999882 379987
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.1e-09 Score=77.99 Aligned_cols=46 Identities=39% Similarity=0.853 Sum_probs=39.6
Q ss_pred CCeeeeccccccccc----ccccccCCeeecccchhcc---C---CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTA----PVFQCENGHIACSTCCSKI---M---NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~----Pv~~c~CGH~fC~~C~~~~---~---~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.. |+ ..+|||.||..|+.+| . ..||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456899999999998 88 5799999999999998 2 589999998653
No 31
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=5.9e-09 Score=75.28 Aligned_cols=46 Identities=35% Similarity=0.827 Sum_probs=39.0
Q ss_pred CCeeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
.+.+.|+||++.+.+|. ....|||.||..|+.+| ...||.||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45678999999998872 26789999999999998 468999998765
No 32
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.65 E-value=5.6e-09 Score=83.58 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=39.7
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~ 128 (328)
.+.+.|+||++.+.+|+ ...|||+||..|+.+|. ..||.|+..+.
T Consensus 13 ~~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCE-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCcee-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 44789999999999999 56999999999999982 47999999875
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=4.4e-09 Score=83.49 Aligned_cols=56 Identities=30% Similarity=0.783 Sum_probs=43.8
Q ss_pred CeeeecccccccccccccccCCeeecccchhccC------CCCCCCCcCCcc---ccccccceeee
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSCCTPIGY---NRCRAIEKVLE 140 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~Cr~~~~~---~r~~~le~~l~ 140 (328)
+.+.|+||++.+.+|+ ..+|||.||..|+.+|. ..||.|+.++.. .++..+.+++.
T Consensus 20 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~ 84 (112)
T 1jm7_A 20 KILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVE 84 (112)
T ss_dssp HHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHH
T ss_pred CCCCCcccChhhcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHH
Confidence 3578999999999999 57999999999999882 379999998763 23444444443
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=5.7e-09 Score=74.92 Aligned_cols=45 Identities=29% Similarity=0.756 Sum_probs=38.0
Q ss_pred Ceeeeccccc-cccccc---ccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280 84 EVFDCPICYE-SLTAPV---FQCENGHIACSTCCSKI----MNKCPSCCTPIG 128 (328)
Q Consensus 84 ~~l~CpiC~~-~l~~Pv---~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~ 128 (328)
+.+.||||++ .+.+|+ ....|||+||..|+.+| ...||.|+.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4578999999 899884 24689999999999998 257999999875
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=2e-09 Score=83.51 Aligned_cols=59 Identities=25% Similarity=0.509 Sum_probs=45.9
Q ss_pred CCeeeecccccccccccccc-cCCeeecccchhccC---------CCCCC--CCcC-Ccc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQC-ENGHIACSTCCSKIM---------NKCPS--CCTP-IGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~~le~~l~~l 142 (328)
.+.|.||||+++|.+|| .. .|||+||..||.+|. ..||. |+.. +.. .+|..|.+++..+
T Consensus 5 ~~~~~CPI~~~~~~dPV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SSCCBCTTTCSBCSSEE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 45789999999999999 56 499999999999881 28999 8865 442 4566666666544
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=3.7e-09 Score=96.72 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.|.||||++++.+|| +++|||+||..||.+| ...||.|+.++.. .+|..+.+++..+
T Consensus 206 ~~~~~c~i~~~~~~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 56889999999999999 6889999999999988 2349999999863 3566666666543
No 37
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.63 E-value=1.6e-08 Score=72.94 Aligned_cols=45 Identities=27% Similarity=0.583 Sum_probs=39.1
Q ss_pred eeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
...|+||++.+.+|+...+|||.||..|+.+| ...||.||.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46899999999998557789999999999988 5789999998763
No 38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.63 E-value=6.2e-09 Score=74.01 Aligned_cols=46 Identities=35% Similarity=0.826 Sum_probs=38.8
Q ss_pred Ceeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 84 EVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
+.+.|+||++.+..|. ....|||.||..|+.+| ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 3578999999998872 36789999999999988 4689999998763
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.61 E-value=3.9e-09 Score=89.95 Aligned_cols=59 Identities=20% Similarity=0.487 Sum_probs=46.8
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeeeee
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLESV 142 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l 142 (328)
+.+.|+||++.+.+|+...+|||+||..|+.+| ...||.|+.++.. ..|..+++++..+
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 467999999999999944489999999999998 3579999998853 2455566665554
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2e-08 Score=70.06 Aligned_cols=40 Identities=35% Similarity=0.764 Sum_probs=34.8
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc------CCCCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI------MNKCPSC 123 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~------~~~CP~C 123 (328)
.+.+.|+||++.+.+|+ ..+|||+||..|+.+| ...||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45679999999999998 5799999999999988 1578887
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.57 E-value=1.9e-08 Score=75.35 Aligned_cols=47 Identities=32% Similarity=0.792 Sum_probs=37.3
Q ss_pred CCeeeecccccccc--ccc-ccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLT--APV-FQCENGHIACSTCCSKI----MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~--~Pv-~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~ 129 (328)
.+.+.||||++++. ++. +.|.|||.||..|+.++ ...||.||+++..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 45789999999985 333 23569999999999887 3589999998763
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.54 E-value=4e-08 Score=67.83 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=36.2
Q ss_pred Ceeeeccccccccc---cccccc-CCeeecccchhcc---CCCCCCCCcCCc
Q 020280 84 EVFDCPICYESLTA---PVFQCE-NGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 84 ~~l~CpiC~~~l~~---Pv~~c~-CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
+...|+||++.+.. ++ ..+ |||.||..|+.+| ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCE-ECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceE-ECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999999876 55 455 9999999999998 468999998753
No 43
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.53 E-value=3.7e-08 Score=67.94 Aligned_cols=45 Identities=29% Similarity=0.680 Sum_probs=36.7
Q ss_pred Ceeeeccccccccc---ccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 84 EVFDCPICYESLTA---PVFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 84 ~~l~CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
+...|+||++.+.+ ++....|||.||..|+.+| ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35689999999865 2336789999999999998 478999998763
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.50 E-value=1.1e-08 Score=88.32 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---C-CCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---M-NKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.|.||||+++|.+|| ..+|||+||..||.+| . ..||.|+.++.. .+|..+.+++..+
T Consensus 104 p~~f~CPI~~elm~DPV-~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCe-ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 66899999999999999 5799999999999998 2 359999998864 4566666665544
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=6.2e-08 Score=71.42 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=38.7
Q ss_pred CCeeeecccccccccc--cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAP--VFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~P--v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
.+...|+||++.+..+ +...+|||.||..|+.+| ...||.||.++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567899999999876 335689999999999998 478999998865
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.48 E-value=6.1e-08 Score=71.90 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=38.0
Q ss_pred Ceeeeccccccccccc--ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 84 EVFDCPICYESLTAPV--FQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv--~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
+.+.|+||++.+..+. ....|||.||..|+.+| ...||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4578999999998663 34589999999999998 4689999998763
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.6e-08 Score=72.34 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=38.7
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+ + ..+|||.||..|+.+| ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 446789999999988 5 6799999999999988 3689999988763
No 48
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.47 E-value=2.7e-08 Score=73.51 Aligned_cols=43 Identities=35% Similarity=0.771 Sum_probs=38.7
Q ss_pred eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
.+.|+||++.+.+|+ ..+|||. ||..|+.+| ..||.||.++..
T Consensus 24 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEE-EETTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEE-EcCCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence 568999999999999 4699999 999999999 799999998753
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.4e-08 Score=70.69 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=38.4
Q ss_pred CCeeeeccccccccccc--ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPV--FQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv--~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+...|+||++.+..+. ...+|||.||..|+.+| ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34568999999998765 23389999999999998 4689999998754
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.47 E-value=5.8e-08 Score=70.27 Aligned_cols=45 Identities=27% Similarity=0.472 Sum_probs=36.7
Q ss_pred eeeeccccccccc--ccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTA--PVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
...|+||++.+.. ++...+|||.||..|+.+| ...||.||..+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4689999998852 3336789999999999998 4689999998753
No 51
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=4.8e-08 Score=72.25 Aligned_cols=43 Identities=35% Similarity=0.771 Sum_probs=38.3
Q ss_pred eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
.+.|+||++.+.+|+ ..+|||. ||..|+.++ ..||.||.++..
T Consensus 25 ~~~C~IC~~~~~~~~-~~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBC-CSSSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEE-EecCCCHHHHHHHhhCC-CCCccCCceecC
Confidence 568999999999999 5799999 999999877 799999998754
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.40 E-value=5.5e-08 Score=78.94 Aligned_cols=46 Identities=35% Similarity=0.811 Sum_probs=40.1
Q ss_pred CCeeeecccccccccc-------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAP-------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~P-------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+| + ...|||+||..|+.+| ...||.|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3568999999999998 5 6899999999999998 4689999998764
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.39 E-value=9.1e-08 Score=73.43 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=37.1
Q ss_pred Ceeeeccccccccc---ccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 84 EVFDCPICYESLTA---PVFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 84 ~~l~CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
+...|+||++.+.. ++ ..+|||.||..|+.+| ...||.||..+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 46789999998876 44 5789999999999998 468999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.7e-07 Score=67.95 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=37.3
Q ss_pred CCCeeeecccccccccc--------------cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 82 DPEVFDCPICYESLTAP--------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~P--------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
|.+...|+||++.|..+ +....|||.|+..|+.+| ...||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 44566799999999763 333459999999999998 368999998865
No 55
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.6e-07 Score=65.36 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=38.9
Q ss_pred CCeeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
.+...|+||++...+++ ..+|||. ||..|.... ..||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWV-LLPCRHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCE-ETTTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEE-EECCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence 34568999999999998 4799999 999999976 799999998753
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.22 E-value=4.8e-07 Score=71.94 Aligned_cols=47 Identities=30% Similarity=0.446 Sum_probs=37.4
Q ss_pred CCeeeecccccccccccc-----------------cccCCeeecccchhccC--------CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVF-----------------QCENGHIACSTCCSKIM--------NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~-----------------~c~CGH~fC~~C~~~~~--------~~CP~Cr~~~~~ 129 (328)
.....|+||++.|..|.. ...|||.||..|+.+|. ..||+||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 344689999999976531 35799999999999883 479999998764
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.7e-07 Score=85.15 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=43.7
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccC-----CCCCC--CCcCCcc---ccccccceee
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM-----NKCPS--CCTPIGY---NRCRAIEKVL 139 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-----~~CP~--Cr~~~~~---~r~~~le~~l 139 (328)
...+.||||+++|++||....|||+||+.||.++. ..||. |++.+.. ..|..|.+++
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv 245 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC 245 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence 44689999999999999434899999999999872 36999 9987653 3455554444
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.14 E-value=5.1e-07 Score=73.16 Aligned_cols=47 Identities=34% Similarity=0.794 Sum_probs=40.7
Q ss_pred CCCeeeecccccccccc-------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 82 DPEVFDCPICYESLTAP-------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~P-------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
+.+.+.|+||++.+..| + .+.|||.||..|+.+| .+.||.||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 45678899999999887 5 6789999999999998 5799999998763
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.12 E-value=5.4e-07 Score=67.42 Aligned_cols=43 Identities=28% Similarity=0.849 Sum_probs=38.1
Q ss_pred eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
...|+||++.+.+|++ .+|||. ||..|+.++ ..||.||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF-CPCGHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 4579999999999994 699999 999999998 599999998763
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.09 E-value=8.4e-07 Score=63.55 Aligned_cols=46 Identities=33% Similarity=0.712 Sum_probs=38.1
Q ss_pred CCeeeeccccccccccccc-ccCCee-ecccchhcc---CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQ-CENGHI-ACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~-c~CGH~-fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
.+...|+||++-..++++. .+|||. ||..|..++ ...||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3456899999999999852 389999 899999988 357999999875
No 61
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=98.04 E-value=1.5e-06 Score=64.12 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=46.4
Q ss_pred eeeeeeeecccCCCCCceEEeecccccccC-CCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeE
Q 020280 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEK-ICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHF 205 (328)
Q Consensus 138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~-~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~ 205 (328)
......|.|+| +|...+...++..|+. .|+++++.|++ |++.+.+.+|..|. ..|+.....+
T Consensus 11 ~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~-~~Cp~~~v~C 73 (76)
T 2yuc_A 11 TCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHE-GMCPQESSGP 73 (76)
T ss_dssp CCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTT-TSCTTSSCCC
T ss_pred HCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHH-hHCCCCccCC
Confidence 34455677875 7888888888888876 88888888885 88888888888888 4566555443
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.02 E-value=1.6e-06 Score=83.24 Aligned_cols=44 Identities=27% Similarity=0.500 Sum_probs=38.8
Q ss_pred eeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~ 129 (328)
...|+||++.+..|+ ..+|||.||..|+..| ...||.||.++..
T Consensus 332 ~~~C~ICle~~~~pv-~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEE-EETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeE-EeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 468999999999998 6899999999999887 3689999998764
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.97 E-value=2.7e-06 Score=80.80 Aligned_cols=45 Identities=29% Similarity=0.652 Sum_probs=39.7
Q ss_pred CCeeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~ 129 (328)
.+.+.|+||++.+.+|+ ..+|||. ||..|+.++ ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v-~lpCgH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVV-FIPCGHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEE-EETTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceE-EcCCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence 34578999999999999 4699999 999999998 799999998753
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.96 E-value=2.1e-06 Score=61.03 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=38.4
Q ss_pred eeeecccccccccccccc-cCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 85 VFDCPICYESLTAPVFQC-ENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
.|.|||+++++.+|| .. .+||+|++.||.+| ...||..++++..
T Consensus 3 ~~~CpIs~~~m~dPV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999999 56 89999999999999 3579999988763
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.94 E-value=2.5e-06 Score=60.82 Aligned_cols=44 Identities=23% Similarity=0.648 Sum_probs=36.5
Q ss_pred eeeecccccccccccc-cccCCee-ecccchhccC---CCCCCCCcCCc
Q 020280 85 VFDCPICYESLTAPVF-QCENGHI-ACSTCCSKIM---NKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~-~c~CGH~-fC~~C~~~~~---~~CP~Cr~~~~ 128 (328)
...|+||++-.+++++ ..+|||. ||..|..++. ..||.||.++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4579999999998873 2389998 9999999882 58999999874
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.92 E-value=3.2e-06 Score=66.81 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCCeeeecccccccccc-----------------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280 82 DPEVFDCPICYESLTAP-----------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY 129 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~P-----------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~ 129 (328)
|.+.-.|+||++.|..+ +....|||.|+..|+.+| ...||+||..+.+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 44566799999998865 333579999999999998 4689999998653
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.79 E-value=6.3e-06 Score=63.30 Aligned_cols=43 Identities=19% Similarity=0.519 Sum_probs=33.7
Q ss_pred Ceeeeccccccccccccc--ccCCeeecccchhcc-----------CCCCCC--CCcC
Q 020280 84 EVFDCPICYESLTAPVFQ--CENGHIACSTCCSKI-----------MNKCPS--CCTP 126 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~--c~CGH~fC~~C~~~~-----------~~~CP~--Cr~~ 126 (328)
+.+.|+||++.+..|... ..|||.||..|+... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999888632 269999999998775 126888 8776
No 68
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.79 E-value=8.4e-06 Score=60.04 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=45.6
Q ss_pred ecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEece
Q 020280 159 YGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNE 209 (328)
Q Consensus 159 ~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~ 209 (328)
..+++.|+..|+|.++.||+ +|+..+.+.+|..|+...|..+.+.+.|..
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~ 51 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCG 51 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSSSC
T ss_pred chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCCCC
Confidence 35788999999999999986 899999999999999999999999998864
No 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.71 E-value=5.7e-06 Score=66.51 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=2.1
Q ss_pred CCCeeeecccccccccc-----------------cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 82 DPEVFDCPICYESLTAP-----------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~P-----------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
|.+.-.|+||++.|..+ +...+|+|.|+..|+.+| ...||.||.++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 44556899999998764 222479999999999998 468999998864
No 70
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=1.3e-05 Score=62.02 Aligned_cols=51 Identities=22% Similarity=0.498 Sum_probs=44.6
Q ss_pred eeecccCCCCCceEEeecccccccCCCCCCCccCCCC--CCCcccccchHhhHhhh
Q 020280 143 KVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSA 196 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~--gC~~~g~~~~L~~Hl~~ 196 (328)
.+.||| .|...+...+++.|...||.+.+.|++. ||.+.+.+.+|..|++.
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 688986 6988889999999998899999999884 89999999999999884
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=4.7e-05 Score=58.80 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=56.5
Q ss_pred eecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCccccccccceeeeeeeeecccCCCCCceEEeeccc
Q 020280 87 DCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK 162 (328)
Q Consensus 87 ~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~ 162 (328)
.|++|..+++.-.-.-+|.|.||.+|...+ .+.||.|+.++.... .....-.+.|+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe-----~~~~~~if~C~~-------------- 63 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE-----QCTRGSLFMCSI-------------- 63 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE-----EEEGGGCCCCCC--------------
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE-----EeccCCEEECCC--------------
Confidence 499999988865445689999999999876 368999998875321 111122233331
Q ss_pred ccccCCCCCCCccCCCCCCCcc-cccchHhhHhhhhcCCCc
Q 020280 163 HDHEKICPHVPCSCPIPDCNFV-GSANHLYKHFSAKHKNSA 202 (328)
Q Consensus 163 ~~He~~C~~~~~~Cp~~gC~~~-g~~~~L~~Hl~~~H~~~~ 202 (328)
.++|.-. .+..+|+.|....|....
T Consensus 64 ---------------~~~CkrtyLs~rdlqaHI~~~H~~~~ 89 (101)
T 3vk6_A 64 ---------------VQGCKRTYLSQRDLQAHINHRHMRAG 89 (101)
T ss_dssp ---------------CCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred ---------------CCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence 3567643 367899999999997643
No 72
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=1e-05 Score=62.64 Aligned_cols=40 Identities=30% Similarity=0.597 Sum_probs=36.1
Q ss_pred eeeeeeeecccCCCCCceEEeecccccccCCCCCCCccCC
Q 020280 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCP 177 (328)
Q Consensus 138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp 177 (328)
+.....++|+|+.|||+..+...++..|++.||-..+.|.
T Consensus 59 ~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 59 LCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp HCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred hcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 3566779999999999999999999999999999988775
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.00098 Score=48.96 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=36.3
Q ss_pred eeeecccccccccccccc-cCCeeecccchhcc---C--CCCCCCCcCCc
Q 020280 85 VFDCPICYESLTAPVFQC-ENGHIACSTCCSKI---M--NKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~---~--~~CP~Cr~~~~ 128 (328)
.-.|.||++++.+-+ .| .|+|.|=..|+.+| . ..||.|+..+.
T Consensus 15 i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 457999999998655 67 59999999999998 2 68999998765
No 74
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0011 Score=49.42 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=35.0
Q ss_pred CCeeeecccccccc--cccccccCC-----eeecccchhcc---C--CCCCCCCcCCcc
Q 020280 83 PEVFDCPICYESLT--APVFQCENG-----HIACSTCCSKI---M--NKCPSCCTPIGY 129 (328)
Q Consensus 83 ~~~l~CpiC~~~l~--~Pv~~c~CG-----H~fC~~C~~~~---~--~~CP~Cr~~~~~ 129 (328)
.+...|.||++-+. .++ ..+|. |.|...|+.+| . ..||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34568999998763 455 35564 99999999999 2 489999998753
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.21 E-value=0.00085 Score=56.76 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCCC--CCCcCCccccccccceeeeeeeeecccCCCCCceEEeeccccccc-CCCCCCCccCCCCCCCcccccchHhhHh
Q 020280 118 NKCP--SCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHE-KICPHVPCSCPIPDCNFVGSANHLYKHF 194 (328)
Q Consensus 118 ~~CP--~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~~~He-~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl 194 (328)
..|| .|...+....-...++......+.|+ ||++.+...++..|+ ..|+++++.|+ .|+..+...+|..|.
T Consensus 83 v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~--~C~~~~~~~~l~~H~ 156 (170)
T 3hcs_A 83 VKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCD--NCAASMAFEDKEIHD 156 (170)
T ss_dssp EECCSTTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECT--TTCCEEEGGGHHHHH
T ss_pred cCCCCCCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECC--CCCCccCHHHHHhHH
Confidence 3565 36554432211111233344568897 899999999999998 69999999999 699999999999998
Q ss_pred hhh
Q 020280 195 SAK 197 (328)
Q Consensus 195 ~~~ 197 (328)
...
T Consensus 157 ~~~ 159 (170)
T 3hcs_A 157 QNC 159 (170)
T ss_dssp TTC
T ss_pred HhC
Confidence 753
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.11 E-value=0.0014 Score=61.57 Aligned_cols=44 Identities=20% Similarity=0.608 Sum_probs=36.4
Q ss_pred eeeeccccccccc----ccccc---cCCeeecccchhccC--------------CCCCCCCcCCc
Q 020280 85 VFDCPICYESLTA----PVFQC---ENGHIACSTCCSKIM--------------NKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~----Pv~~c---~CGH~fC~~C~~~~~--------------~~CP~Cr~~~~ 128 (328)
...|+||+..+.+ |...| .|||.|-..|+.+|- +.||.|+.++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4579999999876 66567 499999999999981 46999999865
No 77
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.02 E-value=0.0007 Score=49.43 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=40.0
Q ss_pred eeeeecccCCCCCceEEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhh
Q 020280 141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196 (328)
Q Consensus 141 ~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~ 196 (328)
.-.+.|+ .|...+.+.++..|+..|+.+++.|+. |+....+.+|..|+..
T Consensus 15 ~r~~~C~----~C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 15 LRLAVCQ----HCDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp CCCEECS----SSCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHH
T ss_pred CcccCCc----ccChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHH
Confidence 3456776 388888888888888888888888884 8888888888888864
No 78
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.54 E-value=0.012 Score=42.68 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=40.1
Q ss_pred cccccccC-CCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEece
Q 020280 160 GKKHDHEK-ICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNE 209 (328)
Q Consensus 160 ~~~~~He~-~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~ 209 (328)
.+|..|+. .|+++++.|+ .|+......+|..|. ..+..+.+.|.++.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~--~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~ 50 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQ--HCDLELSILKLKEHE-DYCGARTELCGNCG 50 (75)
T ss_dssp CCCSCCCCCCCCCCCEECS--SSCCEECHHHHHHHH-HHHHHCEEECSSSC
T ss_pred hHHHhhCcccCCCcccCCc--ccChHhhHHHHHHHH-hHcCCCceEcccCC
Confidence 57889986 8999999998 599999999999999 77887777777653
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.21 E-value=0.016 Score=44.44 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=26.6
Q ss_pred Ceeeeccccc-ccccccccc-cCCeeecccchhc
Q 020280 84 EVFDCPICYE-SLTAPVFQC-ENGHIACSTCCSK 115 (328)
Q Consensus 84 ~~l~CpiC~~-~l~~Pv~~c-~CGH~fC~~C~~~ 115 (328)
+.+.|++|.+ ++.+|+..| .|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 3578999996 578888655 5999999999997
No 80
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.36 E-value=0.075 Score=36.99 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=33.4
Q ss_pred CCeeeeccccccccccc-ccccCCe---eecccchhcc-----CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPV-FQCENGH---IACSTCCSKI-----MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv-~~c~CGH---~fC~~C~~~~-----~~~CP~Cr~~~~ 128 (328)
.+.-.|.||+.-..+|+ .-|.|.+ .|=..|+.+| ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34557999987655554 2345655 7888999999 367999998764
No 81
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.32 E-value=0.2 Score=37.35 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=25.0
Q ss_pred CCeeeecccccccc----ccccccc-CCeeecccchhcc
Q 020280 83 PEVFDCPICYESLT----APVFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~----~Pv~~c~-CGH~fC~~C~~~~ 116 (328)
+...-||-|..++. .+..+|+ |++.||..|...|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 44445999988653 1223796 9999999999887
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.22 E-value=0.099 Score=46.71 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=37.0
Q ss_pred Ceeeeccccccccccccccc-CCeeecccchhcc-----CCCCCCCCcCCc
Q 020280 84 EVFDCPICYESLTAPVFQCE-NGHIACSTCCSKI-----MNKCPSCCTPIG 128 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~-----~~~CP~Cr~~~~ 128 (328)
....|.+|.+++..-+ .|+ |++.|=..|+.+| ...||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3677999999998766 786 9999999999987 248999998764
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.70 E-value=0.25 Score=34.32 Aligned_cols=37 Identities=27% Similarity=0.744 Sum_probs=28.8
Q ss_pred eecccccccccc-ccccc-CCeeecccchhcc---CCCCCCC
Q 020280 87 DCPICYESLTAP-VFQCE-NGHIACSTCCSKI---MNKCPSC 123 (328)
Q Consensus 87 ~CpiC~~~l~~P-v~~c~-CGH~fC~~C~~~~---~~~CP~C 123 (328)
.|-.|...+.+. +|+|+ |++.||.+|=.-+ ...||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 599999988544 47897 9999999994332 3689988
No 84
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.29 E-value=0.24 Score=33.98 Aligned_cols=54 Identities=20% Similarity=0.560 Sum_probs=39.1
Q ss_pred eeecccCCCCCceEEeecccccccCCCCCCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 143 KVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.+.|. -|...+....|..|+..+.-.|+.|++ .|+... .+..|..|++..+...
T Consensus 10 ~~~C~----~C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 10 TQPCT----YCTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp EEECS----SSCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSSSC
T ss_pred Ceecc----ccCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcccC
Confidence 46676 377776677788897668888899973 488764 5568999988766543
No 85
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=84.62 E-value=0.28 Score=37.20 Aligned_cols=42 Identities=31% Similarity=0.744 Sum_probs=34.4
Q ss_pred eeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~ 128 (328)
-+.|..|....+.=| .| ..|.+|..|+..+ +..||.|+.++.
T Consensus 28 ~~nCKsCWf~~k~LV-~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV-EC-NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSSEE-EC-SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCCee-ee-cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 568999998888655 33 6799999999877 578999999875
No 86
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=84.25 E-value=0.55 Score=35.39 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=37.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~ 128 (328)
.+=|.|..|...|....|.-..|.++|..|..+. ..+|..|.+++.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 4568899999999765555568999999999876 578999988765
No 87
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=83.60 E-value=0.31 Score=38.14 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCccCCCCCCCcccccchHhhHhhhhcC
Q 020280 172 VPCSCPIPDCNFVGSANHLYKHFSAKHK 199 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~ 199 (328)
..+.||+.||+|.+...+|..|++..+.
T Consensus 81 l~v~C~n~gC~~~~~~~~l~~H~~~c~~ 108 (118)
T 3hct_A 81 LMVKCPNEGCLHKMELRHLEDHQAHCEF 108 (118)
T ss_dssp SEEECSSTTCCCEEEGGGSGGGTSSSCC
T ss_pred ceeECCCCCCCCEEeeHHHHHHHHHchh
Confidence 4578998999999999999999987554
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.48 E-value=0.72 Score=33.88 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=26.8
Q ss_pred CCeeeeccccccccccc-cccc--CCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPV-FQCE--NGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv-~~c~--CGH~fC~~C~~~~ 116 (328)
...|.|.+|.+-|.+-. .||+ -+|.||-.|-...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence 34689999999998753 4887 6799999996554
No 89
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.70 E-value=2.6 Score=30.42 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=31.1
Q ss_pred eeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP 126 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~ 126 (328)
.-.|..|..-+.-+-|.|.||.+||..=...-...|+..-+.
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG 66 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred CccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhH
Confidence 458999998765545699999999997766544578776443
No 90
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=81.81 E-value=1.6 Score=30.68 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=31.0
Q ss_pred eeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP 126 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~ 126 (328)
.-.|..|..-+.-+.|+|.||.+||..-...-...|+..-+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~ 56 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE 56 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred CCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence 347999999765445699999999998766544678776443
No 91
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.37 E-value=2.9 Score=29.38 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=30.3
Q ss_pred eeeecccccccccccccccCCeeecccchhccCCCCCCCCc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCT 125 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~ 125 (328)
.-.|..|..-+.-+-|.|.||.+||..-...-...|+..-+
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred CCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhh
Confidence 35799999965544469999999999876654457876544
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=77.62 E-value=1.8 Score=31.66 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=28.7
Q ss_pred Ceeeecc--ccccccc----ccccc------cCCeeecccchhccCCCCCCCCc
Q 020280 84 EVFDCPI--CYESLTA----PVFQC------ENGHIACSTCCSKIMNKCPSCCT 125 (328)
Q Consensus 84 ~~l~Cpi--C~~~l~~----Pv~~c------~CGH~fC~~C~~~~~~~CP~Cr~ 125 (328)
...-||. |...+.. +..+| .||+.||..|...|.. -.|..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 3667998 8887642 22379 6999999999999843 45543
No 93
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=77.02 E-value=1.1 Score=35.20 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=37.5
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~ 128 (328)
++-|.|..|...|..--|.-.-|..+|..|..+. ..+|..|.+++.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 4568999999999764445578999999999876 578999998875
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.14 E-value=0.82 Score=34.83 Aligned_cols=38 Identities=37% Similarity=0.954 Sum_probs=28.9
Q ss_pred eeecccccccccccccccCCeeecccchhcc--CCCCCCCCcCCc
Q 020280 86 FDCPICYESLTAPVFQCENGHIACSTCCSKI--MNKCPSCCTPIG 128 (328)
Q Consensus 86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--~~~CP~Cr~~~~ 128 (328)
..||+|...|.. .-++.+|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 689999987763 24566799998766 367999988764
No 95
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=75.98 E-value=0.95 Score=35.04 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=32.9
Q ss_pred eeecccCCCCCceEEeecccccc----cCCCCCCCccCCCCCCCcccccchHhhHhhh
Q 020280 143 KVTCRNSNYGCKVTMSYGKKHDH----EKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~~~~~H----e~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~ 196 (328)
...|| -|...+...++... .+.=.-..+.||+.||+|.+...++..|+..
T Consensus 58 ~~~CP----~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 58 GSYCP----SCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp CSBCT----TTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHHHHHHHHHT
T ss_pred cCcCC----CCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHhHHHHHHHH
Confidence 34576 36666665554321 1111224478998899999999999999974
No 96
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.94 E-value=1.6 Score=29.62 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=30.1
Q ss_pred cCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEE
Q 020280 166 EKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFL 206 (328)
Q Consensus 166 e~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~ 206 (328)
++.|+.+++.|+ .|+.......|..|+.. +......|.
T Consensus 3 ~~~C~~~~~~C~--~C~k~f~~~~L~~H~~~-~~~~p~~C~ 40 (66)
T 2eod_A 3 SGSSGKRTQPCT--YCTKEFVFDTIQSHQYQ-CPRLPVACP 40 (66)
T ss_dssp SSCCCCCEEECS--SSCCEEEHHHHHHHHHH-CSSSEEECT
T ss_pred cccCCCCCeecc--ccCCccCHHHHHHHHHH-cCCcCccCC
Confidence 358999999998 48877778899999987 666655554
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.16 E-value=2.1 Score=32.08 Aligned_cols=44 Identities=27% Similarity=0.588 Sum_probs=32.5
Q ss_pred eeeecccccccc-----ccccccc-CCeeecccchhcc----CCCCCCCCcCCc
Q 020280 85 VFDCPICYESLT-----APVFQCE-NGHIACSTCCSKI----MNKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~-----~Pv~~c~-CGH~fC~~C~~~~----~~~CP~Cr~~~~ 128 (328)
.-.|.||.+-.- ++..-|. |+--+|+.|.+-- ...||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 347999999642 2333464 8999999997643 478999998875
No 98
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=74.18 E-value=6.4 Score=29.18 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=29.9
Q ss_pred eeeeccccccccc--ccccccCCeeecccchhccCCCCCCCCc
Q 020280 85 VFDCPICYESLTA--PVFQCENGHIACSTCCSKIMNKCPSCCT 125 (328)
Q Consensus 85 ~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~ 125 (328)
.-.|..|..-+.- |+ .|.||.+||..=...-...|+..-+
T Consensus 25 ~~rC~~C~kkvgl~~~f-~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSF-ECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCBCSSSCCBCSSSSCE-ECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred CccchhhCCeecccCCe-EcCCCCEecccCCCccCCCCcchhh
Confidence 4589999985543 65 8999999999876554467887544
No 99
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=72.78 E-value=6.8 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=29.4
Q ss_pred eeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280 86 FDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP 126 (328)
Q Consensus 86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~ 126 (328)
-.|..|..-+.-..|.|.||..||..=...-...|+..-+.
T Consensus 26 nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA 66 (74)
T ss_dssp TBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGG
T ss_pred CcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhh
Confidence 47999998644333599999999997765444678776443
No 100
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=72.21 E-value=0.94 Score=36.79 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=21.9
Q ss_pred CCccCCCCCCCcccccchHhh-Hhhh
Q 020280 172 VPCSCPIPDCNFVGSANHLYK-HFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g~~~~L~~-Hl~~ 196 (328)
..+.||+.||+|.+...+|.. |+..
T Consensus 103 L~v~Cpn~GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 103 LPAVCPSDGCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp SEEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred cccccCCCCCCCEeEHHHHHHHHHHH
Confidence 457899889999999999998 9875
No 101
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.97 E-value=2.7 Score=29.76 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCeeeecccccccccccccccCCeeecc-cchhcc-CCCCCCCCcCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACS-TCCSKI-MNKCPSCCTPI 127 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~-~C~~~~-~~~CP~Cr~~~ 127 (328)
.+-|.|..|...|..--|.-.-|.++|. .|..+. ..+|-.|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 4568899999998764344568999999 698776 57898887653
No 102
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.68 E-value=2.7 Score=30.93 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=26.5
Q ss_pred eCCCCeeeecccccccccc--ccccc-CCeeecccchhc
Q 020280 80 VTDPEVFDCPICYESLTAP--VFQCE-NGHIACSTCCSK 115 (328)
Q Consensus 80 ~~d~~~l~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~ 115 (328)
+.|.+.-.|.+|...|..- -.-|. ||.+||..|...
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4456677899999987632 12464 999999999765
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.31 E-value=2.9 Score=30.56 Aligned_cols=37 Identities=32% Similarity=0.722 Sum_probs=26.1
Q ss_pred eCCCCeeeeccccccccccc--cccc-CCeeecccchhcc
Q 020280 80 VTDPEVFDCPICYESLTAPV--FQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 80 ~~d~~~l~CpiC~~~l~~Pv--~~c~-CGH~fC~~C~~~~ 116 (328)
+.|.+.-.|.+|...|..-. .-|. ||.+||..|....
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34555668999999876321 2464 9999999998753
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.88 E-value=2 Score=34.21 Aligned_cols=36 Identities=33% Similarity=0.751 Sum_probs=25.7
Q ss_pred CCCCeeeeccccccccccc--cccc-CCeeecccchhcc
Q 020280 81 TDPEVFDCPICYESLTAPV--FQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 81 ~d~~~l~CpiC~~~l~~Pv--~~c~-CGH~fC~~C~~~~ 116 (328)
.|.+.-.|.+|...|..-. .-|. ||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3444568999999876321 2465 9999999997754
No 105
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.62 E-value=3.3 Score=30.44 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=25.9
Q ss_pred eCCCCeeeeccccccccccc--cccc-CCeeecccchhc
Q 020280 80 VTDPEVFDCPICYESLTAPV--FQCE-NGHIACSTCCSK 115 (328)
Q Consensus 80 ~~d~~~l~CpiC~~~l~~Pv--~~c~-CGH~fC~~C~~~ 115 (328)
+.|.+.-.|.+|...|..-. .-|. ||.+||..|...
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44556678999999875321 2464 999999999764
No 106
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.96 E-value=2.9 Score=32.73 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=35.4
Q ss_pred CCeeeeccccccccc--ccccccCCeeecccchhcc-CC--CCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTA--PVFQCENGHIACSTCCSKI-MN--KCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~-~~--~CP~Cr~~~~ 128 (328)
++-|.|..|..+|.+ ..|.-.-|..+|..|..+. .. .|..|.+++.
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 345889999999962 2334568999999998876 44 8999988875
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=64.69 E-value=1.2 Score=47.06 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCeeeecccccccccccccccCC-eeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280 83 PEVFDCPICYESLTAPVFQCENG-HIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV 142 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CG-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l 142 (328)
++.|.|||=.+++++|| ..+.| +++=+..|.+| ...||.=+.++.. .+|.++...|..+
T Consensus 889 P~~F~cPIs~~lM~DPV-ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPV-ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CGGGBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCe-EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 56899999999999999 57777 68999999999 4679998888763 4676666665543
No 108
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.66 E-value=5.4 Score=36.78 Aligned_cols=42 Identities=29% Similarity=0.582 Sum_probs=30.3
Q ss_pred eeeecccccccccccccc---cCC--eeecccchhcc---CCCCCCCCcC
Q 020280 85 VFDCPICYESLTAPVFQC---ENG--HIACSTCCSKI---MNKCPSCCTP 126 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c---~CG--H~fC~~C~~~~---~~~CP~Cr~~ 126 (328)
.-.||+|...-.--++.- .-| +.+|+-|-..| ..+||.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 347999999755444321 345 68999999999 3689999775
No 109
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.27 E-value=4.4 Score=34.48 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=31.4
Q ss_pred eecccccccccc-----ccccc-CCeeecccchhcc--------------CCCCCCCCcCCc
Q 020280 87 DCPICYESLTAP-----VFQCE-NGHIACSTCCSKI--------------MNKCPSCCTPIG 128 (328)
Q Consensus 87 ~CpiC~~~l~~P-----v~~c~-CGH~fC~~C~~~~--------------~~~CP~Cr~~~~ 128 (328)
.||+|..+..+. +++|. |...|=..|..-. ...||.|+....
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 499999987643 67887 9988888885431 258999987644
No 110
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.26 E-value=3.5 Score=32.58 Aligned_cols=54 Identities=24% Similarity=0.544 Sum_probs=28.3
Q ss_pred eeecccCCCCCceEEee-ccccccc-C-CCCCCCccCCCCCCCccc-ccchHhhHhhhhc
Q 020280 143 KVTCRNSNYGCKVTMSY-GKKHDHE-K-ICPHVPCSCPIPDCNFVG-SANHLYKHFSAKH 198 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~-~~~~~He-~-~C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H 198 (328)
.+.|+.. +|...+.. ..|..|. . .-.-.++.|+.++|+... ....|..|++..|
T Consensus 97 ~~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 97 PYMCEHE--GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CEECCST--TCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CeeCCCC--CCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 4556532 56665533 3444554 2 223355667655566554 3456666766544
No 111
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.19 E-value=2.3 Score=29.67 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCeeeecccccccccccccccCCeeecccchhccCCCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPS 122 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~ 122 (328)
.+=|.|..|...|..-.|.-.-|..+|..|..+.-.+|+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSS
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCC
Confidence 3457788888888654344457788888887766445554
No 112
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.44 E-value=5 Score=28.31 Aligned_cols=39 Identities=31% Similarity=0.563 Sum_probs=27.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCP 121 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP 121 (328)
.+=|.|..|...|....|...-|.++|..|..+. ...|-
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 33 SECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp GGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSS
T ss_pred cccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCC
Confidence 3457888998888754444568889999988765 34443
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=61.32 E-value=3.6 Score=30.70 Aligned_cols=36 Identities=28% Similarity=0.718 Sum_probs=25.3
Q ss_pred CCCCeeeecccccccccc--ccccc-CCeeecccchhcc
Q 020280 81 TDPEVFDCPICYESLTAP--VFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 81 ~d~~~l~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~~ 116 (328)
.|.+.-.|.+|...|..- -.-|. ||.+||..|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 344456799999877521 12465 9999999997754
No 114
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=60.77 E-value=5.4 Score=28.70 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCCccCCCCCCCccc-ccchHhhHhhhhcCC
Q 020280 171 HVPCSCPIPDCNFVG-SANHLYKHFSAKHKN 200 (328)
Q Consensus 171 ~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~ 200 (328)
-.|+.|+.++|+... ....|..|++..|..
T Consensus 25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred CCCeECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence 478999888999877 568899998767764
No 115
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.27 E-value=3 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCeeeecccccccc--ccccccc-CCeeecccchh
Q 020280 83 PEVFDCPICYESLT--APVFQCE-NGHIACSTCCS 114 (328)
Q Consensus 83 ~~~l~CpiC~~~l~--~Pv~~c~-CGH~fC~~C~~ 114 (328)
.+...|++|..+.. ..+++|. |...|=..|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 34567999999873 3455786 77777777754
No 116
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=60.26 E-value=4.2 Score=34.04 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~ 128 (328)
++-|.|..|..+|....| ..-|..+|..|..+. ..+|..|..++.
T Consensus 85 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp SSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred cccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccC
Confidence 445778888888765444 357888888887665 467888877654
No 117
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.12 E-value=3.5 Score=30.34 Aligned_cols=38 Identities=29% Similarity=0.872 Sum_probs=25.7
Q ss_pred eeecccccccccccccccCCeeecccchhcc--CCCCCCCCcCCc
Q 020280 86 FDCPICYESLTAPVFQCENGHIACSTCCSKI--MNKCPSCCTPIG 128 (328)
Q Consensus 86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--~~~CP~Cr~~~~ 128 (328)
..||.|...+.. .-++..|..|-..+ ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcccCcchhhHHH
Confidence 579999987653 23355688887665 247888877654
No 118
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=59.95 E-value=3.2 Score=32.55 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCeeeeccccccccc--ccccccCCeeecccchhcc-CC--CCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTA--PVFQCENGHIACSTCCSKI-MN--KCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~-~~--~CP~Cr~~~~ 128 (328)
++-|.|..|...|.. ..|.-.-|..+|..|..+. .. .|..|.+++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 566899999999963 2334578999999998876 34 7999988764
No 119
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=59.87 E-value=3.2 Score=28.69 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=38.4
Q ss_pred eecccCCCCCceEEee-cccccccC-C-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCCceeEEe
Q 020280 144 VTCRNSNYGCKVTMSY-GKKHDHEK-I-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNSALHFLY 207 (328)
Q Consensus 144 v~C~n~~~GC~~~~~~-~~~~~He~-~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~~~~~y 207 (328)
+.|... +|...+.. ..|..|.. . =.-.++.|+.++|+... ....|..|+...+......|.+
T Consensus 8 ~~C~~~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 73 (79)
T 2dlk_A 8 MPCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73 (79)
T ss_dssp EECSST--TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred ccCCCC--CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC
Confidence 456542 67776654 34555654 1 23467889876798766 5678999998766555544443
No 120
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=59.79 E-value=3.4 Score=32.75 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=64.9
Q ss_pred CCeeeeccccccccccc-ccc--cCCeee-----cccchhccCCCCCCCCcCCcccccc--ccceeeeeeeeecccCCCC
Q 020280 83 PEVFDCPICYESLTAPV-FQC--ENGHIA-----CSTCCSKIMNKCPSCCTPIGYNRCR--AIEKVLESVKVTCRNSNYG 152 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv-~~c--~CGH~f-----C~~C~~~~~~~CP~Cr~~~~~~r~~--~le~~l~~l~v~C~n~~~G 152 (328)
...+.|++|...|.... +.- .--|.- +..|. ...|+.|...+.....+ -+..-...-.+.|+.. +
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~ 97 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP--G 97 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCT--T
T ss_pred hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcC--C
Confidence 44688999999887543 110 000110 00110 14799998877643211 1111122345778742 7
Q ss_pred CceEEee-cccccccCCC-CCCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 153 CKVTMSY-GKKHDHEKIC-PHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 153 C~~~~~~-~~~~~He~~C-~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
|...+.. ..|..|+..- .-.++.|+..+|+... ....|..|++..+...
T Consensus 98 C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k 149 (155)
T 2rpc_A 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149 (155)
T ss_dssp TCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC
T ss_pred CCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence 8887654 4566776532 3457889876798766 4678999998655443
No 121
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.26 E-value=2.1 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|++..|...
T Consensus 64 ~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 64 KPYICQ--SCGKGFSRPDHLNGHIKQVHSGP 92 (95)
T ss_dssp SSBCCS--SSCCCBSSHHHHHHHHHHTSCCC
T ss_pred CceECC--CccchhCCHHHHHHHHHHhcCCC
Confidence 567887 488665 5678999998888654
No 122
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.71 E-value=5.1 Score=33.07 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=36.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~ 128 (328)
.+-|.|..|...|..-.| ..-|..+|..|..+. ..+|..|..++.
T Consensus 31 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 556899999999876554 468999999998765 678999988764
No 123
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.88 E-value=27 Score=26.01 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCCeeeeccccccccccccccc---CC-eeecccchhcc-----CCCCCCCCcC
Q 020280 82 DPEVFDCPICYESLTAPVFQCE---NG-HIACSTCCSKI-----MNKCPSCCTP 126 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~Pv~~c~---CG-H~fC~~C~~~~-----~~~CP~Cr~~ 126 (328)
+.+...| +|..+....+++|. |. ..|=..|+.-. ...||.|+..
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 3456778 99998666676776 44 56777776532 2479998654
No 124
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=56.53 E-value=7.5 Score=27.28 Aligned_cols=28 Identities=18% Similarity=0.479 Sum_probs=13.0
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHK 199 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~ 199 (328)
.++.|+...|+... ....|..|+...+.
T Consensus 34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 62 (89)
T 2wbs_A 34 KPYHCDWDGCGWKFARSDELTRHYRKHTG 62 (89)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHHHC
T ss_pred CCcCCCCCCCCCccCCHHHHHHHHHHcCC
Confidence 34555543455443 33455555544333
No 125
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.36 E-value=5.3 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.627 Sum_probs=24.3
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|...|....|.-.-|.++|..|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 4457788888888654444567888888887765
No 126
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.21 E-value=5.5 Score=28.17 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred eeeeccccccccccc---ccccCCeeecccchhccCCCCCCCCc
Q 020280 85 VFDCPICYESLTAPV---FQCENGHIACSTCCSKIMNKCPSCCT 125 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv---~~c~CGH~fC~~C~~~~~~~CP~Cr~ 125 (328)
.-.|..|..-+.-+- |.|.||.+||..=...-...|+..-+
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSS
T ss_pred CCcchhhCCeecccccCceEecCCCEehhccCCccccCCccccc
Confidence 347999999887762 68999999999776544456776544
No 127
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=54.19 E-value=3.2 Score=35.01 Aligned_cols=46 Identities=22% Similarity=0.488 Sum_probs=34.9
Q ss_pred CCeeeeccccccccc--ccccccCCeeecccchhcc-CC--CCCCCCcCCc
Q 020280 83 PEVFDCPICYESLTA--PVFQCENGHIACSTCCSKI-MN--KCPSCCTPIG 128 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~-~~--~CP~Cr~~~~ 128 (328)
.+-|.|..|...|.. ..|...-|..+|..|..+. .. .|..|.+++.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 456889999999875 2334578999999998876 33 5999988654
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.91 E-value=7.1 Score=27.75 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=21.6
Q ss_pred eecccccccccc--ccccc-CCeeecccchhc
Q 020280 87 DCPICYESLTAP--VFQCE-NGHIACSTCCSK 115 (328)
Q Consensus 87 ~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~ 115 (328)
.|.+|...|..- -.-|. ||.+||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 699999987531 12464 999999999764
No 129
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.32 E-value=4.3 Score=27.97 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=19.7
Q ss_pred eeeccccccccc-----cccccc---CCeeecccchhcc
Q 020280 86 FDCPICYESLTA-----PVFQCE---NGHIACSTCCSKI 116 (328)
Q Consensus 86 l~CpiC~~~l~~-----Pv~~c~---CGH~fC~~C~~~~ 116 (328)
-.||-|..++.. -| +|. |++.||..|...|
T Consensus 7 k~CP~C~~~Iek~~GCnhm-tC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHM-VCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSS-SCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEeCCCCCcE-EECCCCcCCEEeeCcCCCc
Confidence 469999988753 23 454 6666666666555
No 130
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.58 E-value=5.4 Score=27.42 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=21.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
.+=|.|..|...|....|.-.-|.++|..|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 3446677777777644444456777777776654
No 131
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=52.54 E-value=6.1 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCCccCCCCCCCccc-ccchHhhHhhhhcCC
Q 020280 171 HVPCSCPIPDCNFVG-SANHLYKHFSAKHKN 200 (328)
Q Consensus 171 ~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~ 200 (328)
-.++.|+ .|+... ....|..|++..|..
T Consensus 62 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 62 ERPFKCQ--ICPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp CCCEECS--SSSCEESSHHHHHHHHTTCCSC
T ss_pred CCCccCC--CCCCccCCHHHHHHHHHHhcCC
Confidence 3567888 488666 567899999876654
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.34 E-value=7.2 Score=28.49 Aligned_cols=34 Identities=32% Similarity=0.728 Sum_probs=19.2
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|...|..--|.-..|..+|..|..+.
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 3446666666666543333345666666666554
No 133
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.20 E-value=5.6 Score=28.38 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCC 124 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr 124 (328)
.+=|.|..|...|..--|.-.-|.++|..|..+. ..+|--|.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 32 RCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred cccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 4557888888888654344567888998888765 45665554
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.05 E-value=5.6 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.752 Sum_probs=15.4
Q ss_pred ccc-CCeeecccchhcc--CCCCCCCCcCC
Q 020280 101 QCE-NGHIACSTCCSKI--MNKCPSCCTPI 127 (328)
Q Consensus 101 ~c~-CGH~fC~~C~~~~--~~~CP~Cr~~~ 127 (328)
.|. ||+.| ...+ ...||.|+...
T Consensus 69 ~C~~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred ChhhCcCee----cccCCCCCCCcCCCCCc
Confidence 464 88888 2233 36899998753
No 135
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.95 E-value=6.5 Score=31.06 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCeeeeccccccccccc--cccc-CCeeecccchhcc
Q 020280 82 DPEVFDCPICYESLTAPV--FQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~Pv--~~c~-CGH~fC~~C~~~~ 116 (328)
|.+...|..|...|..-. .-|. ||.+||..|..+.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 344557999999876321 2464 9999999997754
No 136
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.67 E-value=6.6 Score=27.23 Aligned_cols=34 Identities=32% Similarity=0.659 Sum_probs=25.5
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
.+=|.|..|...|....|.-..|.++|..|..++
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 4558899998888765555568889999888765
No 137
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=50.62 E-value=2.7 Score=33.31 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=38.9
Q ss_pred eeeecccCCCCCceEEee-cccccccCCC-CCCCccCCCCCCCccc-ccchHhhHhhhhcCC-CceeEE
Q 020280 142 VKVTCRNSNYGCKVTMSY-GKKHDHEKIC-PHVPCSCPIPDCNFVG-SANHLYKHFSAKHKN-SALHFL 206 (328)
Q Consensus 142 l~v~C~n~~~GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~-~~~~~~ 206 (328)
-.+.|+.. +|...+.. ..|..|+..- .-.++.|+..+|+... ....|..|+...|.. ....|.
T Consensus 66 ~~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~ 132 (155)
T 2gli_A 66 KPHKCTFE--GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132 (155)
T ss_dssp CCCCCCST--TCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECC
T ss_pred CCccCCCC--CCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCC
Confidence 34667632 67765543 3566675432 3467889876788766 567899998666653 334444
No 138
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.90 E-value=10 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=19.4
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhh
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
+|+.|+..+|++.. ....|..|++.
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 57889866799876 56788899875
No 139
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=49.22 E-value=8.9 Score=32.29 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPI 127 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~ 127 (328)
.+=|.|..|...|..--|.-..|.++|..|..+. ..+|..|....
T Consensus 140 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 140 KSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred hhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 4457788888877643344457788888887765 56777776653
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.04 E-value=7.1 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=21.6
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
+=|.|..|...|..--|.-.-|.++|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 346777777777653334457777887777654
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.50 E-value=8.6 Score=26.98 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=18.0
Q ss_pred CeeeecccccccccccccccCCeeecc-cchhcc
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACS-TCCSKI 116 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~-~C~~~~ 116 (328)
+=|.|..|...|..-.|.-.-|.++|. .|..+.
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~ 68 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHH
T ss_pred CCCCCCCCCCccCCCceEeECCEEecchHHHHHh
Confidence 345666666666543233345666666 566543
No 142
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=48.33 E-value=14 Score=19.95 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.5
Q ss_pred CccCCCCCCCccc-ccchHhhHhhh
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
|+.|+.+.|+... ....|..|+..
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred CcCCcCCCCCcccCCHhHHHHHHHH
Confidence 5678755788765 46788999875
No 143
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=47.86 E-value=12 Score=35.17 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=30.2
Q ss_pred eCCCCeeeeccccccccc---cccccc-CCeeecccchhccCCCCCC
Q 020280 80 VTDPEVFDCPICYESLTA---PVFQCE-NGHIACSTCCSKIMNKCPS 122 (328)
Q Consensus 80 ~~d~~~l~CpiC~~~l~~---Pv~~c~-CGH~fC~~C~~~~~~~CP~ 122 (328)
..+...-.|..|...|.- .-+.|. ||..+|+.|..++. .|+.
T Consensus 352 ~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~ 397 (406)
T 2vrw_B 352 FSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGR 397 (406)
T ss_dssp ECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC--
T ss_pred ccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCC
Confidence 344556789999998752 334687 99999999999885 3543
No 144
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.03 E-value=9.5 Score=28.26 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=22.1
Q ss_pred eeeccccccccccc--cccc-CCeeecccchhc
Q 020280 86 FDCPICYESLTAPV--FQCE-NGHIACSTCCSK 115 (328)
Q Consensus 86 l~CpiC~~~l~~Pv--~~c~-CGH~fC~~C~~~ 115 (328)
-.|.+|...|..-. .-|. ||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 47999999775321 2464 999999999765
No 145
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.89 E-value=7 Score=27.00 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
.+=|.|..|...|..-.|.-.-|.++|..|..+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred ccCCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 3346677777776654333456777777776654
No 146
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=46.13 E-value=20 Score=19.41 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=17.7
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhh
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
.++.|+.+.|+... ....|..|+..
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence 35678755687665 46788999875
No 147
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.95 E-value=7.9 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.3
Q ss_pred CCeeeecccccccc-cccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLT-APVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~-~Pv~~c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|..+|. ...|.-.-|.++|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 45688999999887 33334457889999998765
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.60 E-value=7.5 Score=26.74 Aligned_cols=34 Identities=32% Similarity=0.705 Sum_probs=22.9
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|...|..-.|.-..|.++|..|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 4457788888777654444457778888887654
No 149
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=45.43 E-value=9.1 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=18.9
Q ss_pred CCeeeecccccccccccccccCCeeecccch
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCC 113 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~ 113 (328)
.+.|.||+|...|.--. ..|-.+|..|.
T Consensus 6 L~iL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQ---DKQELWSRQAK 33 (68)
T ss_dssp SCCCBCSSSCCBCEEET---TTTEEEETTTT
T ss_pred hhheECCCCCCcCeEeC---CCCEEEcCCCC
Confidence 45789999998776322 35666666553
No 150
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=45.35 E-value=8.3 Score=26.25 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=22.6
Q ss_pred CCeeeecccccccccccccccCCeeec-ccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIAC-STCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC-~~C~~~~ 116 (328)
++=|.|..|..+|..--|.-.-|..+| ..|..++
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 345778888887765444445778888 7776553
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.74 E-value=9.1 Score=33.12 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=22.8
Q ss_pred eeecccccccccc--ccccc-CCeeecccchhcc
Q 020280 86 FDCPICYESLTAP--VFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 86 l~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~~ 116 (328)
-.|.+|...|.-- -.-|. ||++||..|....
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4799999987521 12465 9999999997653
No 152
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.53 E-value=8.2 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred CeeeecccccccccccccccCCeeecccchhc
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSK 115 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~ 115 (328)
+=|.|..|...|....|.-.-|..+|..|..+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 34667777777665433445677777777654
No 153
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.56 E-value=7.8 Score=28.88 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|++..|...
T Consensus 79 ~~~~C~--~C~k~f~~~~~L~~H~~~hh~~~ 107 (115)
T 2dmi_A 79 KVLKCM--YCGHSFESLQDLSVHMIKTKHYQ 107 (115)
T ss_dssp SSCBCS--SSCCBCSSHHHHHHHHHHTTTTT
T ss_pred cceECC--CCCCccCCHHHHHHHHHHhCCcc
Confidence 567887 487665 5688999999877653
No 154
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.51 E-value=8.3 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=17.1
Q ss_pred eeeecccccccccccccccCCeeecccchhc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSK 115 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~ 115 (328)
=|.|..|...|..-.|.-.-|..+|..|..+
T Consensus 46 CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 46 CFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp TCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred cCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 4566666666654333334566666666543
No 155
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.40 E-value=6.8 Score=23.88 Aligned_cols=16 Identities=44% Similarity=0.767 Sum_probs=12.2
Q ss_pred Ceeeeccccccccccc
Q 020280 84 EVFDCPICYESLTAPV 99 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv 99 (328)
+-|.||+|+.-|..+-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3578999998887664
No 156
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.16 E-value=11 Score=26.62 Aligned_cols=45 Identities=22% Similarity=0.590 Sum_probs=29.0
Q ss_pred CCeeeeccccccccc-cccccc-CCeeecccchhcc-------CCCCCCCCcCC
Q 020280 83 PEVFDCPICYESLTA-PVFQCE-NGHIACSTCCSKI-------MNKCPSCCTPI 127 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~-Pv~~c~-CGH~fC~~C~~~~-------~~~CP~Cr~~~ 127 (328)
.+...|++|...-.. .+++|. |...|=..|+.-. ...||.|...+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345679999887543 455776 7777777776432 14688886543
No 157
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.94 E-value=9.8 Score=35.90 Aligned_cols=44 Identities=25% Similarity=0.560 Sum_probs=33.7
Q ss_pred eeeecccccccccccccccCCeeecccchhcc-------CCCCCCCCcCCc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI-------MNKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-------~~~CP~Cr~~~~ 128 (328)
.|.||+=+..+..|+--..|.|+-|-+-..-+ ...||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 47999999999999966679999877642211 358999988765
No 158
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.33 E-value=10 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=16.9
Q ss_pred eeeecccccccccccccccCCeeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
=|.|..|...|..--|.-.-|..+|..|..+.
T Consensus 39 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 39 CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp TCCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred cCeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 35566666665542223345566666665543
No 159
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=42.17 E-value=36 Score=24.00 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCeeeeccccccccccccccc---CC-eeecccchhcc-----CCCCCCCCcC
Q 020280 83 PEVFDCPICYESLTAPVFQCE---NG-HIACSTCCSKI-----MNKCPSCCTP 126 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~---CG-H~fC~~C~~~~-----~~~CP~Cr~~ 126 (328)
.+...| +|..+....+++|. |. ..|=..|+.-. ...||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 345668 89987555666775 44 46666776522 2468988654
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.36 E-value=11 Score=35.32 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=34.1
Q ss_pred eeeecccccccccccccccCCeeecccchhcc-------CCCCCCCCcCCc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI-------MNKCPSCCTPIG 128 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-------~~~CP~Cr~~~~ 128 (328)
.|.||+=+..+..|+--..|.|+-|-+-..-+ ...||.|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 57899999999999966679999877643221 258999998765
No 161
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.22 E-value=11 Score=26.88 Aligned_cols=32 Identities=28% Similarity=0.778 Sum_probs=18.4
Q ss_pred eeeecccccccccccccccCCeeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
=|.|..|...|..-.|.-.-|.++|..|..+.
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred CCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 45666666666543333445666666666543
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.51 E-value=14 Score=26.21 Aligned_cols=33 Identities=33% Similarity=0.697 Sum_probs=21.6
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|..+|..-.| -.-|..||..|..+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 39 PDHFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 345777777777765443 346777777777665
No 163
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.27 E-value=18 Score=25.90 Aligned_cols=44 Identities=16% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCeeeeccccccc--cccccccc-CCeeecccchhcc--------CCCCCCCCcCC
Q 020280 83 PEVFDCPICYESL--TAPVFQCE-NGHIACSTCCSKI--------MNKCPSCCTPI 127 (328)
Q Consensus 83 ~~~l~CpiC~~~l--~~Pv~~c~-CGH~fC~~C~~~~--------~~~CP~Cr~~~ 127 (328)
.+.+.| +|..+. ...+++|. |...|=..|+.-. ...||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345678 899987 35666887 8877777776422 25799997653
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.85 E-value=13 Score=32.39 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=21.8
Q ss_pred eecccccccccc--ccccc-CCeeecccchhc
Q 020280 87 DCPICYESLTAP--VFQCE-NGHIACSTCCSK 115 (328)
Q Consensus 87 ~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~ 115 (328)
.|.+|...|..- -.-|. ||.+||..|...
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 799999877621 12465 999999999764
No 165
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=39.55 E-value=15 Score=27.21 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=26.1
Q ss_pred eeeeccccccccccccccc-CCeeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~ 116 (328)
+-.|.||...-..-+|.|. |+-+|=..|+.+.
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCccccccccceeccccccccccHhhcccc
Confidence 4579999977677777886 9999999998875
No 166
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.09 E-value=13 Score=31.10 Aligned_cols=26 Identities=35% Similarity=0.851 Sum_probs=16.0
Q ss_pred CeeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP 126 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~ 126 (328)
..+.|++|..+... ..+..||.|..+
T Consensus 137 ~~~~C~~CG~i~~~-----------------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-----------------EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-----------------CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-----------------CCCCCCCCCCCC
Confidence 35677777776541 233578888764
No 167
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.71 E-value=15 Score=26.78 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=25.0
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc-CCCCC
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCP 121 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP 121 (328)
+=|.|..|...|..--|.-.-|.++|..|..+. ..+|-
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 447788888877653334457788888887665 34554
No 168
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.70 E-value=15 Score=25.88 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=19.4
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
.+=|.|..|...|..--+.-.-|..+|..|..+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 39 PECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred cCcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 3446667776666543333346666776666543
No 169
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.63 E-value=13 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=18.5
Q ss_pred CCeeeecccccccccccccccCCeeecccch
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCC 113 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~ 113 (328)
.+.|.||+|...|.--. .-|..+|..|.
T Consensus 8 LeiL~CP~ck~~L~~~~---~~g~LvC~~c~ 35 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLE---SEQLLVNERLN 35 (67)
T ss_dssp TCCCBCTTTCCBCEEET---TTTEEEETTTT
T ss_pred HHHhCCCCCCCcCeEeC---CCCEEEcCCCC
Confidence 56789999999776322 34566665553
No 170
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=38.59 E-value=12 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=11.6
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhh
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
.++.|+. |+... ....|..|++.
T Consensus 74 ~~~~C~~--C~~~f~~~~~l~~H~~~ 97 (100)
T 2ebt_A 74 KPFQCGV--CNRSFSRSDHLALHMKR 97 (100)
T ss_dssp CSCBCSS--SCCBCSSHHHHHHHHHH
T ss_pred CCeECCC--CcCccCCHHHHHHHHHH
Confidence 4455652 55443 34556666543
No 171
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.00 E-value=8.4 Score=28.84 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=62.0
Q ss_pred eeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCccccccc--cc---eeeeeeeeecccCCCCCceEEee
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRA--IE---KVLESVKVTCRNSNYGCKVTMSY 159 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~~r~~~--le---~~l~~l~v~C~n~~~GC~~~~~~ 159 (328)
.+.|++|...|...... -.|.- .-...-...|+.|...+....++. +. .-...-.+.|+ -|...+..
T Consensus 7 ~~~C~~C~~~f~~~~~l--~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~----~C~~~f~~ 78 (124)
T 2dlq_A 7 GVECPTCHKKFLSKYYL--KVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS----VCQETFRR 78 (124)
T ss_dssp SCCCTTTCCCCSSHHHH--HHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECS----SSCCEESS
T ss_pred CCCCCCCCCcCCCHHHH--HHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECC----CCCCccCC
Confidence 57899999988754310 11210 000111357999988775432111 11 01233457787 48876654
Q ss_pred c-ccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 160 G-KKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 160 ~-~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
. .|..|... -.-.++.|+ .|+... ....|..|+...|...
T Consensus 79 ~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~ 121 (124)
T 2dlq_A 79 RMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIKLHSGP 121 (124)
T ss_dssp HHHHHHHHHHHSSSCSEECS--SSCCEESSHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHcCCCCCccCC--CccchhCCHHHHHHHHHHHCCCC
Confidence 3 45667543 234678898 488766 5678999999888753
No 172
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.14 E-value=16 Score=29.94 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=27.3
Q ss_pred eeeecccccccc---ccccccc-CCeeecccchhccC----CCCCCCCc
Q 020280 85 VFDCPICYESLT---APVFQCE-NGHIACSTCCSKIM----NKCPSCCT 125 (328)
Q Consensus 85 ~l~CpiC~~~l~---~Pv~~c~-CGH~fC~~C~~~~~----~~CP~Cr~ 125 (328)
.-.|.+|..+|. ++-.+|. |.|.+|..|-.... ..|-.|.+
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 347999999864 2222565 99999999984331 34666654
No 173
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=37.00 E-value=14 Score=31.11 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=34.5
Q ss_pred CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcC
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTP 126 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~ 126 (328)
++=|.|..|...|..-.|.-.-|..+|..|..+. ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 5678999999999875455568999999999876 5678777543
No 174
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=36.67 E-value=24 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=14.8
Q ss_pred CCeeecccchhcc-CCCCCCCCcCCcc
Q 020280 104 NGHIACSTCCSKI-MNKCPSCCTPIGY 129 (328)
Q Consensus 104 CGH~fC~~C~~~~-~~~CP~Cr~~~~~ 129 (328)
||+.|=..=++.+ .-+||.|.-.+..
T Consensus 9 Cg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 9 CWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp TTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred cCCCccHHHHhhCCCcccCccCcEEEE
Confidence 5555544333333 2589999776543
No 175
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.28 E-value=16 Score=25.72 Aligned_cols=33 Identities=21% Similarity=0.546 Sum_probs=18.7
Q ss_pred CeeeecccccccccccccccCCeeecccchhcc
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
+=|.|..|...|..-.|.-..|.++|..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 346666666666532233346666776666554
No 176
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.20 E-value=16 Score=29.39 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=22.5
Q ss_pred eeecccccccc----ccccccc-CCeeecccchhcc
Q 020280 86 FDCPICYESLT----APVFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 86 l~CpiC~~~l~----~Pv~~c~-CGH~fC~~C~~~~ 116 (328)
-.|.+|...|. .-. +|. |.|.+|..|-...
T Consensus 56 ~~C~~C~~~~g~l~~~g~-~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASV-VCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SBCSSSCCBCSTTSCCEE-ECTTTCCEEETTSEEEC
T ss_pred ccccccCCCcccccCCCC-CCCCCCcccccccCCcc
Confidence 47999999883 223 454 9999999997755
No 177
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=34.82 E-value=23 Score=23.68 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=28.8
Q ss_pred eeecccCCCCCceEEeec-ccccccC-CCCCCCccCCCCCCCccc-ccchHhhHhh
Q 020280 143 KVTCRNSNYGCKVTMSYG-KKHDHEK-ICPHVPCSCPIPDCNFVG-SANHLYKHFS 195 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~-~~~~He~-~C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~ 195 (328)
...|... ||...+... .|..|+. .-.-.++.|+...|+... ....|..|++
T Consensus 17 ~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 17 SHICSHP--GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70 (72)
T ss_dssp CEECSST--TTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred ceeCCCC--CCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence 4567643 677766543 3445543 223456777655677655 3456667754
No 178
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=34.13 E-value=11 Score=32.02 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCcCCccccccccceeeeeeeeecccCCCCCceEEeecccccccCC
Q 020280 123 CCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKI 168 (328)
Q Consensus 123 Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~ 168 (328)
|...+.+..-...|+...-.+..||.....|+|.+.+.++..|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 6555555445566777777889999863349999999999888654
No 179
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.13 E-value=17 Score=22.32 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCCccCCCCCCCccc-ccchHhhHhhh
Q 020280 171 HVPCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 171 ~~~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
-.++.|+++.|+... ....|..|+..
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 467889755798766 45778999875
No 180
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.66 E-value=16 Score=25.88 Aligned_cols=34 Identities=24% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCeeeeccccccccccccccc-CCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTAPVFQCE-NGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~ 116 (328)
++=|.|..|...|...-|.-. .|.++|..|..+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 39 PGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred HHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 334666666666654333322 4566666666544
No 181
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=33.17 E-value=25 Score=26.17 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=50.4
Q ss_pred CCCC--CCCcCCcccccc--ccceeeeeeeeecccCCCCCceEEee-cccccccCCC-CCCCccCCCCCCCccc-ccchH
Q 020280 118 NKCP--SCCTPIGYNRCR--AIEKVLESVKVTCRNSNYGCKVTMSY-GKKHDHEKIC-PHVPCSCPIPDCNFVG-SANHL 190 (328)
Q Consensus 118 ~~CP--~Cr~~~~~~r~~--~le~~l~~l~v~C~n~~~GC~~~~~~-~~~~~He~~C-~~~~~~Cp~~gC~~~g-~~~~L 190 (328)
..|| .|...+.....+ -+..- ..-...|+ -|...+.. ..|..|...- .-.++.|+..+|+... ....|
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~----~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l 80 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA----ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 80 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGG-SCCCEECT----TTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECC----CCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence 3688 788776532111 01111 33456786 48776654 4566775532 3457888866788766 56788
Q ss_pred hhHhhhhcCCCceeEE
Q 020280 191 YKHFSAKHKNSALHFL 206 (328)
Q Consensus 191 ~~Hl~~~H~~~~~~~~ 206 (328)
..|+...+......|.
T Consensus 81 ~~H~~~h~~~~~~~C~ 96 (124)
T 1ubd_C 81 RTHVRIHTGDRPYVCP 96 (124)
T ss_dssp HHHHHHHHCCCCCCCC
T ss_pred HHHHHHhCCCCceECC
Confidence 9999876665555554
No 182
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.54 E-value=18 Score=25.68 Aligned_cols=28 Identities=18% Similarity=0.533 Sum_probs=18.1
Q ss_pred CCeeeecccccccccccccccCCeeecccch
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTCC 113 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~ 113 (328)
.+.|.||+|...|.--. .-|-.+|..|.
T Consensus 6 L~iL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQR---AQAELVCNADR 33 (70)
T ss_dssp CCCCBCTTTCCBEEEET---TTTEEEETTTT
T ss_pred hhheECCCCCCcCEEeC---CCCEEEcCCCC
Confidence 45789999999776322 24556655553
No 183
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.34 E-value=9.5 Score=36.14 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=0.0
Q ss_pred eCCCCeeeecccccccccc--ccccc-CCeeecccchhc
Q 020280 80 VTDPEVFDCPICYESLTAP--VFQCE-NGHIACSTCCSK 115 (328)
Q Consensus 80 ~~d~~~l~CpiC~~~l~~P--v~~c~-CGH~fC~~C~~~ 115 (328)
+.|.+.-.|.+|...|.-- -.-|. ||++||..|...
T Consensus 370 ~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 370 VPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ---------------------------------------
T ss_pred CCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 3445566899999977522 12464 999999999764
No 184
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=32.18 E-value=16 Score=23.94 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=31.7
Q ss_pred eeecccCCCCCceEEee-cccccccCC---CCCCCccCCCCCCCccc-ccchHhhHhhhhcC
Q 020280 143 KVTCRNSNYGCKVTMSY-GKKHDHEKI---CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHK 199 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~-~~~~~He~~---C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~ 199 (328)
.+.|+ -|...+.. ..+..|... -.-.++.|+ .|+... ....|..|++..|.
T Consensus 10 ~~~C~----~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 10 TYRCK----VCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp EEECT----TTCCEESSHHHHHHHHHHHSSSSCCCEECT--TTCCEESCHHHHHHHHHHHTC
T ss_pred ceECC----CCcchhCCHHHHHHHHHHHcCCCCcCeECC--CCCCccCCHHHHHHHHHHHcC
Confidence 45565 36655543 345556543 245678887 487665 45788999888774
No 185
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.01 E-value=15 Score=25.07 Aligned_cols=10 Identities=20% Similarity=0.673 Sum_probs=4.8
Q ss_pred eecccccccc
Q 020280 87 DCPICYESLT 96 (328)
Q Consensus 87 ~CpiC~~~l~ 96 (328)
.|..|...+.
T Consensus 13 ~C~~C~~~i~ 22 (72)
T 3f6q_B 13 TCERCKGGFA 22 (72)
T ss_dssp BCTTTCCBCC
T ss_pred cchhcCcccc
Confidence 4555555444
No 186
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.87 E-value=29 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=27.9
Q ss_pred Ceeeecc--ccccccccccccc-CCeeecccchhccCCCCCC
Q 020280 84 EVFDCPI--CYESLTAPVFQCE-NGHIACSTCCSKIMNKCPS 122 (328)
Q Consensus 84 ~~l~Cpi--C~~~l~~Pv~~c~-CGH~fC~~C~~~~~~~CP~ 122 (328)
....|+. |......|+ .|. |+..||..=...-...|+.
T Consensus 24 ~~~~C~~~~Ck~~~~l~f-~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAV-ICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEESSCE-ECTTTCCEECGGGCSTGGGTCSS
T ss_pred CCCCCCCcCCCCCCccce-ECCCCCcccccccCCccCCCCCC
Confidence 3568999 998766676 898 9999998654443456764
No 187
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=31.46 E-value=15 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.581 Sum_probs=21.7
Q ss_pred CCeeeeccccccccc-cccccc-CCeeecccchhc
Q 020280 83 PEVFDCPICYESLTA-PVFQCE-NGHIACSTCCSK 115 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~-Pv~~c~-CGH~fC~~C~~~ 115 (328)
.+.+.| +|..+... .+++|. |...|=..|+.-
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi 50 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKI 50 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTC
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCc
Confidence 445678 89987653 566776 777777777643
No 188
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.22 E-value=2 Score=31.96 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=19.2
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKN 200 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~ 200 (328)
.++.|+ .|+... ....|..|++..|..
T Consensus 68 ~~~~C~--~C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 68 KKLTCL--ECMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp GGGEEG--GGTEECSSHHHHHHHHHHTSCC
T ss_pred CCccCc--cccchhCCHHHHHHHHHHHcCC
Confidence 457787 477655 467899999877754
No 189
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.70 E-value=37 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=25.5
Q ss_pred eeecccccccc-ccccccc-CCeeecccchhcc------CCCCCCCCc
Q 020280 86 FDCPICYESLT-APVFQCE-NGHIACSTCCSKI------MNKCPSCCT 125 (328)
Q Consensus 86 l~CpiC~~~l~-~Pv~~c~-CGH~fC~~C~~~~------~~~CP~Cr~ 125 (328)
..| ||..... ..+++|. |...|=..|+... ...||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 467 7877643 4566776 7777777776432 147999964
No 190
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.51 E-value=19 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=17.0
Q ss_pred CCeeeecccccccccccccccCCeeecccc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTC 112 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C 112 (328)
.+.|.||+|...|.--. .-|-.+|..|
T Consensus 6 L~iL~CP~ck~~L~~~~---~~~~LiC~~c 32 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDK---SKDELICKGD 32 (68)
T ss_dssp EEECBCTTTCCBCEEET---TTTEEEETTT
T ss_pred hhheECCCCCCcCeEeC---CCCEEEcCCC
Confidence 35688999998776322 2455555554
No 191
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.30 E-value=25 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=14.4
Q ss_pred eeeecccccccccccccccCCeeecccchhc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSK 115 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~ 115 (328)
-|.|..|...|.. .|.-.-|..+|..|..+
T Consensus 42 CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 42 CFKCQTCSVILTG-EYISKDGVPYCESDYHA 71 (80)
T ss_dssp TCBCSSSCCBCSS-CCEEETTEEECTTHHHH
T ss_pred cCCcCcCCCCcCC-CeEEECCEEECHHHHHH
Confidence 3555555555543 22233455555555543
No 192
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.07 E-value=32 Score=19.48 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=18.8
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhh
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAK 197 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~ 197 (328)
.++.|+.+.|+... ....|..|+...
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H 31 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHh
Confidence 46788866798766 457789998753
No 193
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.07 E-value=23 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=30.2
Q ss_pred CCeeeeccccccccc--ccccccCCeeecccchhcc-CCCCCCCC
Q 020280 83 PEVFDCPICYESLTA--PVFQCENGHIACSTCCSKI-MNKCPSCC 124 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr 124 (328)
++-|.|..|..+|.. ..|.-.-|.++|..|..+. ..+|-.|.
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 456889999999874 2334568899999998775 45665553
No 194
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.05 E-value=29 Score=22.12 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.4
Q ss_pred CCCcccccchHhhHhhhhcCC
Q 020280 180 DCNFVGSANHLYKHFSAKHKN 200 (328)
Q Consensus 180 gC~~~g~~~~L~~Hl~~~H~~ 200 (328)
+|+.......+.+|+++.|..
T Consensus 22 ~CgkPi~lsAIvdHLenhC~~ 42 (44)
T 2lo3_A 22 KCGKPLALTAIVDHLENHCAG 42 (44)
T ss_dssp TTCCEEETTTHHHHHHHCCTT
T ss_pred ccCCcchHHHHHHHHHHHhcc
Confidence 799999999999999988764
No 195
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.88 E-value=27 Score=24.21 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=25.7
Q ss_pred eeecc--ccccccccccccc-CCeeecccchhccCCCCCC
Q 020280 86 FDCPI--CYESLTAPVFQCE-NGHIACSTCCSKIMNKCPS 122 (328)
Q Consensus 86 l~Cpi--C~~~l~~Pv~~c~-CGH~fC~~C~~~~~~~CP~ 122 (328)
-.|+. |...-..|+ .|. |+..||..=...-...|+.
T Consensus 13 ~~Cs~~~Ck~~~ll~f-~C~~C~~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 13 NKCERAGCRQREMMKL-TCERCSRNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp CCCCSTTCCCCCSSCC-BCSSSCCBCCHHHHSTTSSCCCS
T ss_pred CCCCccCCCCCCccce-ECCCCCcccCcccCCccCCcCCC
Confidence 47888 998755676 898 9999998654433456654
No 196
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=29.43 E-value=14 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.7
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKN 200 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~ 200 (328)
.++.|+ .|+... ....|..|++..+..
T Consensus 72 ~~~~C~--~C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 72 KPFKCQ--ECGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CTTSCS--SSCCCCSSHHHHHHHHHHTTSC
T ss_pred CCeECC--CcCCcccCHHHHHHHHHHhCCC
Confidence 457787 487655 567899998765543
No 197
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.37 E-value=35 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCccCCCCCCCcccc-cchHhhHhhhhcCCCc
Q 020280 172 VPCSCPIPDCNFVGS-ANHLYKHFSAKHKNSA 202 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g~-~~~L~~Hl~~~H~~~~ 202 (328)
....|| .|+.... ...|..|++..|+.-+
T Consensus 11 ~~~~CP--rCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 11 GRKICP--RCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SCCCCT--TTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred CceeCC--cccccccchHHHHhhhhhcCcchh
Confidence 456788 6987774 7889999999998754
No 198
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=29.17 E-value=34 Score=23.26 Aligned_cols=26 Identities=35% Similarity=0.899 Sum_probs=20.4
Q ss_pred CccCCCCCCCccc-ccchHhhHhhhhc
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSAKH 198 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~~H 198 (328)
++.|...+|++.+ .+..|..|++.+|
T Consensus 38 ~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 38 PLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CCEeeCCCCcCCCCChHHHHhhccccC
Confidence 6788888898765 4678889988876
No 199
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.02 E-value=17 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=17.6
Q ss_pred eeeecccccccccccccccCCeeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~ 116 (328)
=|.|..|...|..-.|.-.-|.++|..|..+.
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 35566666666543333345666666665543
No 200
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=28.70 E-value=35 Score=19.40 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.2
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhh
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
.++.|+.+.|+... ....|..|+..
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 46778765788766 56788899775
No 201
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.31 E-value=20 Score=25.93 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=11.9
Q ss_pred eeecccccccccccccccCCeeecccchh
Q 020280 86 FDCPICYESLTAPVFQCENGHIACSTCCS 114 (328)
Q Consensus 86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~ 114 (328)
|.|..|...|..--|.-..|.+||..|..
T Consensus 52 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 80 (89)
T 1x64_A 52 FVCADCNLNLKQKGYFFVEGELYCETHAR 80 (89)
T ss_dssp CCCSSSCCCTTTSCCEEETTEEECHHHHH
T ss_pred CEecCCCCCCCCCCeEeECCEEECHHHHH
Confidence 44444444443311122344445544443
No 202
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=28.12 E-value=31 Score=17.78 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.4
Q ss_pred CccCCCCCCCccc-ccchHhhHhhh
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
++.|+.+.|+... ....|..|.+.
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 4567655788665 45678888764
No 203
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=28.05 E-value=24 Score=23.64 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=23.0
Q ss_pred eeecccCCCCCceEEeec-ccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhh
Q 020280 143 KVTCRNSNYGCKVTMSYG-KKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFS 195 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~ 195 (328)
.+.|+.. +|...+... .+..|+.. -.-.++.|+ .|+... ....|..|++
T Consensus 19 ~~~C~~~--~C~k~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~ 70 (73)
T 1f2i_G 19 PYACPVE--SCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIR 70 (73)
T ss_dssp CEECSST--TBCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHT
T ss_pred ccCCcCC--CCCCccCCHHHHHHHHHhhCCCCCeECC--CCCchhCCHHHHHHHHH
Confidence 3556531 466554432 33444321 123456666 365444 3455666654
No 204
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.94 E-value=22 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCeeeecccccccc--ccccccc-CCeeecccchh
Q 020280 83 PEVFDCPICYESLT--APVFQCE-NGHIACSTCCS 114 (328)
Q Consensus 83 ~~~l~CpiC~~~l~--~Pv~~c~-CGH~fC~~C~~ 114 (328)
...+.| +|..+.. ..+++|. |...|=..|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 456789 7998753 2566786 77777666754
No 205
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.74 E-value=19 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.557 Sum_probs=16.9
Q ss_pred CCeeeecccccccccccccccCCeeecccc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACSTC 112 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C 112 (328)
.+.|.||+|...|.--. .-|-.+|..|
T Consensus 6 LeiL~CP~ck~~L~~~~---~~~~LiC~~c 32 (69)
T 2pk7_A 6 LDILACPICKGPLKLSA---DKTELISKGA 32 (69)
T ss_dssp GGTCCCTTTCCCCEECT---TSSEEEETTT
T ss_pred HhheeCCCCCCcCeEeC---CCCEEEcCCC
Confidence 35688999998776322 2455555555
No 206
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.44 E-value=31 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.549 Sum_probs=18.4
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhc
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKH 198 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H 198 (328)
.++.|..+.|+... ....|..|+....
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~ 38 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRSHS 38 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTTSC
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHHhC
Confidence 46778654687665 4578889987633
No 207
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.62 E-value=37 Score=24.38 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=27.6
Q ss_pred eeecc--ccccccccccccc-CCeeecccchhccCCCCCCC
Q 020280 86 FDCPI--CYESLTAPVFQCE-NGHIACSTCCSKIMNKCPSC 123 (328)
Q Consensus 86 l~Cpi--C~~~l~~Pv~~c~-CGH~fC~~C~~~~~~~CP~C 123 (328)
-.|.. |...-.-|+ .|. |+.+||..=...-...|+.-
T Consensus 15 ~~Cs~~~C~~~dflpf-~C~~C~~~FC~~HR~~e~H~C~~~ 54 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPF-VCDGCSGIFCLEHRSKDSHGCSEV 54 (75)
T ss_dssp CCCSCTTTCCCSCCCE-ECTTTCCEECSTTCSSGGGTCCCC
T ss_pred CCcCcccCCCccceee-ECcccCcCcCcccCCccccCCCCC
Confidence 37888 998766687 898 99999986555444678753
No 208
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=26.51 E-value=26 Score=30.04 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.9
Q ss_pred eeeecccccccccccccccCCeeecccchhc
Q 020280 85 VFDCPICYESLTAPVFQCENGHIACSTCCSK 115 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~ 115 (328)
...|++|.+.+..+...-..|..+|..|..+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4689999998887653445899999999865
No 209
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=26.12 E-value=16 Score=29.86 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=55.9
Q ss_pred CeeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCcccccc--ccceeeeeeeeecccCCCCCceEEee-c
Q 020280 84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCR--AIEKVLESVKVTCRNSNYGCKVTMSY-G 160 (328)
Q Consensus 84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~~r~~--~le~~l~~l~v~C~n~~~GC~~~~~~-~ 160 (328)
..+.|++|...|..... - -.|.-- -...-...|+.|...+.....+ -+..-...-.+.|+ -|...+.. .
T Consensus 20 ~~~~C~~C~~~f~~~~~-l-~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~----~C~~~f~~~~ 91 (190)
T 2i13_A 20 KPYACPECGKSFSRSDH-L-AEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP----ECGKSFSQRA 91 (190)
T ss_dssp -----------CCSSHH-H-HHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECT----TTCCEESCHH
T ss_pred CCCcCCCCccccCCHHH-H-HHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCc----ccCCccCCHH
Confidence 45899999998875531 0 112100 0011124799998876542211 11111223457787 48776654 4
Q ss_pred ccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCCceeEEec
Q 020280 161 KKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNSALHFLYN 208 (328)
Q Consensus 161 ~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~~~~~y~ 208 (328)
.|..|... -.-.++.|+ .|+... ....|..|+...+......|.++
T Consensus 92 ~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 139 (190)
T 2i13_A 92 NLRAHQRTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139 (190)
T ss_dssp HHHHHHHHHHTCCCEECT--TTCCEESSHHHHHHHHHHHHCCCCEECTTT
T ss_pred HHHHHHHhcCCCCCCcCC--CCCCccCCHHHHHHHHHHhCCCCCeECCCC
Confidence 56667532 234678887 588666 46789999988776665555544
No 210
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.05 E-value=14 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=11.9
Q ss_pred eeecccccccccccccccCCeeecccchh
Q 020280 86 FDCPICYESLTAPVFQCENGHIACSTCCS 114 (328)
Q Consensus 86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~ 114 (328)
|.|..|...|..--|.-.-|.+||..|..
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 70 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHAR 70 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHH
Confidence 44444444443221222344444444443
No 211
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.56 E-value=58 Score=21.00 Aligned_cols=14 Identities=14% Similarity=0.505 Sum_probs=10.0
Q ss_pred Ceeeeccccccccc
Q 020280 84 EVFDCPICYESLTA 97 (328)
Q Consensus 84 ~~l~CpiC~~~l~~ 97 (328)
..+.|++|..++.+
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 35788888877653
No 212
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=25.25 E-value=31 Score=23.89 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred eeecccCCCCCceEEeec-ccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCCceeEEe
Q 020280 143 KVTCRNSNYGCKVTMSYG-KKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNSALHFLY 207 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~-~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~~~~~y 207 (328)
.+.|+.. +|...+... .+..|... -.-.++.|+ .|+... ....|..|+...+......|..
T Consensus 4 ~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 67 (90)
T 1a1h_A 4 PYACPVE--SCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDI 67 (90)
T ss_dssp CEECCSS--SCCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred ceECCCC--CCCCccCCHHHHHHHHHHhCCCCCccCC--CCCcccCCHHHHHHHHHHcCCCCCccCCC
Confidence 3566532 687766543 45566532 123567887 487655 5678899988766655555543
No 213
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=25.16 E-value=21 Score=29.11 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=10.1
Q ss_pred Ceeee--cccccccccc
Q 020280 84 EVFDC--PICYESLTAP 98 (328)
Q Consensus 84 ~~l~C--piC~~~l~~P 98 (328)
..+.| ++|...|...
T Consensus 11 ~~~~C~~~~C~~~f~~~ 27 (190)
T 1tf6_A 11 KRYICSFADCGAAYNKN 27 (190)
T ss_dssp CCCBCSSTTTCCBCSSH
T ss_pred cceeCCCCCCcchhCCH
Confidence 35678 6788877643
No 214
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.95 E-value=10 Score=21.49 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=11.2
Q ss_pred ccCCCCCCCcccccchHhhHhh
Q 020280 174 CSCPIPDCNFVGSANHLYKHFS 195 (328)
Q Consensus 174 ~~Cp~~gC~~~g~~~~L~~Hl~ 195 (328)
+.|| -|...++...+..|+.
T Consensus 7 vqcp--vcqq~mpaahin~hld 26 (29)
T 3vhs_A 7 VQCP--VCQQMMPAAHINSHLD 26 (29)
T ss_dssp EECT--TTCCEEEGGGHHHHHH
T ss_pred eeCh--HHHHhCcHHHHHHHHh
Confidence 4555 3665556566666654
No 215
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.16 E-value=14 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=28.8
Q ss_pred CceEE--eecccccccCCCCCCCccCCCCCCCccc-ccchHhhHhhhhcCC
Q 020280 153 CKVTM--SYGKKHDHEKICPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKN 200 (328)
Q Consensus 153 C~~~~--~~~~~~~He~~C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~ 200 (328)
|...+ ....|..|.....-.++.|. .|+... ....|..|+...|..
T Consensus 40 C~k~F~~~~~~L~~H~~~h~~k~~~C~--~Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 40 CQAVGRKTIEGLKKHMENCKQEMFTCH--HCGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp TCSCEESSHHHHHHHHHHHCCCCCCCS--SSCCCCSSHHHHHHHHHHHTCC
T ss_pred CCCCcccCHHHHHHHHHHHCCCCeECC--CCCCeeCCHHHHHHHhHHhcCC
Confidence 55554 34455566543345678887 487666 457899996566753
No 216
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.10 E-value=71 Score=23.26 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCeeeecccccccccc----cccccCCeeecccchhccC--CCCCCCCcC
Q 020280 82 DPEVFDCPICYESLTAP----VFQCENGHIACSTCCSKIM--NKCPSCCTP 126 (328)
Q Consensus 82 d~~~l~CpiC~~~l~~P----v~~c~CGH~fC~~C~~~~~--~~CP~Cr~~ 126 (328)
....+.|.+|..++.+. ..--.-|-. +..+. ..||.|..+
T Consensus 24 em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~-----fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDEALGWPEDGIAAGTR-----WDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCCEEEETTTCCEEETTTCBTTTTBCTTCC-----TTTSCTTCCCTTTCCC
T ss_pred CcceEEeCCCCEEEcCCcCCcccCcCCCCC-----hhHCCCCCcCCCCCCC
Confidence 34579999999887642 111112222 23332 379999875
No 217
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.00 E-value=49 Score=19.69 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=19.0
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~~~ 39 (46)
T 2elz_A 11 KPYKCE--DCGKGYNRRLNLDMHQRVHMGEK 39 (46)
T ss_dssp SSCBCS--SSCCBCSSHHHHHHHGGGGGSCC
T ss_pred CCeeCc--ccCchhCCHHHHHHHHHhcCCCC
Confidence 467787 587665 4678999988644433
No 218
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.87 E-value=44 Score=19.89 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=19.1
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2epz_A 11 KPFDCI--DCGKAFSDHIGLNQHRRIHTGEK 39 (46)
T ss_dssp CSBCCT--TTCCCBSSHHHHHHHHTTTTTCC
T ss_pred CCeECC--CCCceeCCHHHHHHHHHHhCCCC
Confidence 567787 487665 4578999987644443
No 219
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.85 E-value=45 Score=19.76 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCCc
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNSA 202 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~ 202 (328)
.++.|+ .|+... ....|..|+........
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2eq4_A 11 KLYNCK--ECGKSFSRAPCLLKHERLHSGEKP 40 (46)
T ss_dssp CCCCBT--TTTBCCSCHHHHHHHHHHCCSSSC
T ss_pred CCeECC--CCCCccCchHHHHHHHHhcCCCCC
Confidence 567787 487665 46789999876444333
No 220
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.83 E-value=27 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.807 Sum_probs=15.6
Q ss_pred CCeeeecccccccccccccccCCeeecc
Q 020280 83 PEVFDCPICYESLTAPVFQCENGHIACS 110 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~ 110 (328)
.+.|.||+|...|.-- . |..+|.
T Consensus 8 L~iL~CP~c~~~L~~~----~-~~L~C~ 30 (56)
T 2kpi_A 8 LEILACPACHAPLEER----D-AELICT 30 (56)
T ss_dssp TTSCCCSSSCSCEEEE----T-TEEEEC
T ss_pred HhheeCCCCCCcceec----C-CEEEcC
Confidence 5678999999976521 1 666665
No 221
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.69 E-value=23 Score=24.29 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCeeeeccccccccccccccc---CC-eeecccchhcc-----CCCCCCCC
Q 020280 83 PEVFDCPICYESLTAPVFQCE---NG-HIACSTCCSKI-----MNKCPSCC 124 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~Pv~~c~---CG-H~fC~~C~~~~-----~~~CP~Cr 124 (328)
.+...| +|..+....+++|. |. ..|=..|+.-. ...||.|+
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~ 58 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 58 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHH
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcc
Confidence 345667 89997655666775 44 67777776532 13566664
No 222
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.62 E-value=27 Score=20.20 Aligned_cols=13 Identities=31% Similarity=0.610 Sum_probs=8.0
Q ss_pred eeeeccccccccc
Q 020280 85 VFDCPICYESLTA 97 (328)
Q Consensus 85 ~l~CpiC~~~l~~ 97 (328)
.+.||+|+..+-+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4567777765544
No 223
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.52 E-value=36 Score=23.85 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=22.3
Q ss_pred eeeeccccccccccccccc-C-Ceeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQCE-N-GHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~-C-GH~fC~~C~~~~ 116 (328)
.--|-||.+- .++.|. | |-+||..|+...
T Consensus 8 ~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED---ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC---CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC---CeEEecCCCCceehHHHHHHH
Confidence 4468899885 445775 7 899999999876
No 224
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.43 E-value=58 Score=16.44 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=15.3
Q ss_pred CccCCCCCCCccc-ccchHhhHhhhh
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSAK 197 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~~ 197 (328)
|+.|+ .|+... ....|..|....
T Consensus 2 ~~~C~--~C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 2 EHKCP--HCDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCS--SCCCCCCTTTHHHHHHHHH
T ss_pred CCcCC--CCCcccCCHHHHHHHHHHh
Confidence 56677 476554 457888898753
No 225
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.38 E-value=60 Score=16.57 Aligned_cols=25 Identities=28% Similarity=0.651 Sum_probs=16.9
Q ss_pred CccCCCCCCCccc-ccchHhhHhhhhcC
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSAKHK 199 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~ 199 (328)
++.|+ .|+... ....|..|....+.
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQ--YCEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCS--SSSCCCSCSHHHHHHHHHHTS
T ss_pred CccCC--CCCCccCCHHHHHHHHHHHcc
Confidence 46676 477554 45789999886554
No 226
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=23.35 E-value=58 Score=23.72 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=39.4
Q ss_pred eeecccCCCCCceEEee-cccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCCceeEEec
Q 020280 143 KVTCRNSNYGCKVTMSY-GKKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNSALHFLYN 208 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~~~~~y~ 208 (328)
.+.|+.. +|...+.. ..|..|... -.-.++.|+...|+... ....|..|+...+......|..+
T Consensus 6 ~~~C~~~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 72 (119)
T 2jp9_A 6 PFMCAYP--GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72 (119)
T ss_dssp CBCCCST--TSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTT
T ss_pred eeeCCCC--CCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCcc
Confidence 3556532 67765543 455666542 12356888866788665 56789999987666555555443
No 227
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=23.30 E-value=11 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=20.6
Q ss_pred EeecccccccCCCCCCCccCCCCCCCcc
Q 020280 157 MSYGKKHDHEKICPHVPCSCPIPDCNFV 184 (328)
Q Consensus 157 ~~~~~~~~He~~C~~~~~~Cp~~gC~~~ 184 (328)
+....++.|...|+|+.+.|. .|...
T Consensus 17 G~~~~lKGHKr~C~~r~C~C~--kC~li 42 (52)
T 1lpv_A 17 GLKITLKGHKRYCKFRYCTCE--KCRLT 42 (52)
T ss_dssp TCCCTTTTCGGGCTTTTCCSH--HHHHH
T ss_pred CCccccCCccCccCCCCCcCC--CCcCc
Confidence 445778999999999999987 56543
No 228
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=23.25 E-value=56 Score=19.42 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCCc
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNSA 202 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~ 202 (328)
.++.|+ .|+... ....|..|+........
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~ 40 (46)
T 2ely_A 11 KPFKCV--ECGKGFSRRSALNVHHKLHTGEKP 40 (46)
T ss_dssp CSBCCS--SSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred CCcccC--ccCcccCCHHHHHHHHHHcCCCCC
Confidence 567787 487655 56889999886444433
No 229
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.78 E-value=33 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=17.2
Q ss_pred eeeecccccccccccccc--cCCeeecccchhcc
Q 020280 85 VFDCPICYESLTAPVFQC--ENGHIACSTCCSKI 116 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c--~CGH~fC~~C~~~~ 116 (328)
=|.|..|...|..-.|.. .-|.+||..|..++
T Consensus 42 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 42 CFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp TCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred cCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 356666666665433321 35666666665543
No 230
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=22.74 E-value=14 Score=26.86 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=34.9
Q ss_pred eeecccCCCCCceEEeecccccccCCCCCC-CccCCCCCCCcccccchHhhHh
Q 020280 143 KVTCRNSNYGCKVTMSYGKKHDHEKICPHV-PCSCPIPDCNFVGSANHLYKHF 194 (328)
Q Consensus 143 ~v~C~n~~~GC~~~~~~~~~~~He~~C~~~-~~~Cp~~gC~~~g~~~~L~~Hl 194 (328)
.+.|- +|...+.-.+++.|...|.-. .+.|- .|+......+...|.
T Consensus 10 ~F~C~----~Cgd~lKK~kv~~H~~~Cr~~~~~SCI--DC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 10 FFTCN----ACGESVKKIQVEKHVSNCRNCECLSCI--DCGKDFWGDDYKSHV 56 (79)
T ss_dssp EEEES----SSCCEEETTHHHHHHHHCTTCCEEEET--TTTEEEEGGGTTTCC
T ss_pred EEEcC----CCCCeeecccchhHHhhCCCCCcEEec--ccCCeeCCCCEeCEe
Confidence 35664 788888888888898888864 67887 588777777777774
No 231
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.71 E-value=49 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=19.1
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~ 39 (46)
T 2eov_A 11 KPYKCS--DCGKSFTWKSRLRIHQKCHTGER 39 (46)
T ss_dssp CSCBCS--SSCCBCSSHHHHHHHHHHHSCCS
T ss_pred CCccCC--ccChhhCCHHHHHHHHHhcCCCC
Confidence 567887 487665 4678999987644433
No 232
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.64 E-value=59 Score=16.61 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=15.5
Q ss_pred CccCCCCCCCccc-ccchHhhHhhh
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSA 196 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~ 196 (328)
|+.|+ .|+... ....|..|+..
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 2 KFACP--ECPKRFMRSDHLTLHILL 24 (29)
T ss_dssp CEECS--SSSCEESCSHHHHHHHTG
T ss_pred CccCC--CCCchhCCHHHHHHHHHH
Confidence 56777 487655 45788889875
No 233
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.60 E-value=45 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=19.7
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCCc
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNSA 202 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~~ 202 (328)
.++.|+ .|+... ....|..|+......+.
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~ 40 (46)
T 2ytm_A 11 KPYKCM--ECGKAFGDNSSCTQHQRLHTGQRP 40 (46)
T ss_dssp CSSSBT--TTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred CCcCCC--CCCchhCCHHHHHHHHHHcCCCCC
Confidence 467787 487665 45789999887544443
No 234
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=22.37 E-value=44 Score=22.60 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCceEEee-cccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcC
Q 020280 152 GCKVTMSY-GKKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHK 199 (328)
Q Consensus 152 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~ 199 (328)
.|...... ..|..|+.. -.-.++.|+..+|+... ....|..|+...+.
T Consensus 8 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 58 (85)
T 2j7j_A 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58 (85)
T ss_dssp TCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred CCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence 68776653 456666532 12367889876798766 56789999877554
No 235
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=22.14 E-value=52 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=19.1
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k 39 (46)
T 2emk_A 11 KPYECK--ECGKAFSQTTHLIQHQRVHTGEK 39 (46)
T ss_dssp CSCBCS--SSCCBCSCHHHHHHHHHHHSSCC
T ss_pred CceECC--CCCchhCCHHHHHHHHHHcCCCC
Confidence 567787 487665 5678999987644443
No 236
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.06 E-value=58 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=19.3
Q ss_pred CCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 171 HVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 171 ~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
-.++.|+ .|+... ....|..|+.......
T Consensus 10 ~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k 39 (46)
T 2ytn_A 10 KKPYKCN--ECGKVFTQNSHLARHRGIHTGEK 39 (46)
T ss_dssp CSSCBCT--TTCCBCSSHHHHHHHGGGTSCCC
T ss_pred CcCeECC--CCCCeeCCHHHHHHHhhhcCCCC
Confidence 3567887 487665 4678999987644433
No 237
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=21.77 E-value=20 Score=29.58 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCeeeecccccccc--ccccccc-CCeeecccchhcc--------CCCCCCCCcC
Q 020280 83 PEVFDCPICYESLT--APVFQCE-NGHIACSTCCSKI--------MNKCPSCCTP 126 (328)
Q Consensus 83 ~~~l~CpiC~~~l~--~Pv~~c~-CGH~fC~~C~~~~--------~~~CP~Cr~~ 126 (328)
.+...| +|..+.. ..+++|. |..+|-..|..-. ...||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345679 9999853 3456886 8888888887532 2479999753
No 238
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.67 E-value=26 Score=22.86 Aligned_cols=28 Identities=18% Similarity=0.679 Sum_probs=15.8
Q ss_pred eeeccccccccc-cccccc-CCeeecccchh
Q 020280 86 FDCPICYESLTA-PVFQCE-NGHIACSTCCS 114 (328)
Q Consensus 86 l~CpiC~~~l~~-Pv~~c~-CGH~fC~~C~~ 114 (328)
+.| +|..+... .+++|. |...|=..|+.
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvg 34 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAK 34 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccC
Confidence 345 57766443 555665 66555555543
No 239
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.62 E-value=56 Score=19.32 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=18.9
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2eop_A 11 KPHECR--ECGKSFSFNSQLIVHQRIHTGEN 39 (46)
T ss_dssp CSCBCT--TTCCBCSSHHHHHHHHTTTTTSC
T ss_pred CCeeCC--CCCchhCCHHHHHHHHHHcCCCC
Confidence 567787 487655 5678999987644333
No 240
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=21.45 E-value=12 Score=20.62 Aligned_cols=16 Identities=50% Similarity=0.908 Sum_probs=11.3
Q ss_pred CCCCCCCCCcccccCC
Q 020280 10 EEGEGPSGNSKRQRRA 25 (328)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (328)
.+|..||+-.+||||.
T Consensus 4 rrgsrpsgaerrrrra 19 (26)
T 1g70_B 4 RRGSRPSGAERRRRRA 19 (26)
T ss_pred ccCCCCchHHHHHHHH
Confidence 4677888866666664
No 241
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=54 Score=19.48 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=18.8
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2ytq_A 11 KPYGCS--ECGKAFSSKSYLIIHMRTHSGEK 39 (46)
T ss_dssp CSCBCS--SSCCBCSCHHHHHHHHTTTCCSC
T ss_pred CCcCCC--ccChhhCChHHHHHHHHHhCCCC
Confidence 467787 487655 4678999987644333
No 242
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=50 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+...+...
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~ 39 (46)
T 2ytr_A 11 KPYKCN--ECGKAFSQTSKLARHQRIHTGEK 39 (46)
T ss_dssp CTTCCT--TTCCCCSSHHHHHHHHTTTTTCS
T ss_pred cCcCCC--CCCCccCCHHHHHHHHHhcCCCC
Confidence 567787 487655 5678999987644433
No 243
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.40 E-value=50 Score=19.57 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=19.3
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~ 39 (46)
T 2eme_A 11 KPYVCD--YCGKAFGLSAELVRHQRIHTGEK 39 (46)
T ss_dssp CSEECS--SSCCEESSHHHHHHHHGGGCCCS
T ss_pred CCeECC--CCChhhCCHHHHHHHHHhcCCCC
Confidence 567887 487665 5678999987644433
No 244
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=21.38 E-value=45 Score=21.42 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=21.8
Q ss_pred eeeeccccccccccccccc-CCeeecccchhccCCCC
Q 020280 85 VFDCPICYESLTAPVFQCE-NGHIACSTCCSKIMNKC 120 (328)
Q Consensus 85 ~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~~~~C 120 (328)
.-.|..|...+.. -++|. |+-.+=..|..++...|
T Consensus 14 pt~C~~C~~~l~q-G~~C~~C~~~~H~~C~~~v~~~C 49 (52)
T 1faq_A 14 LAFCDICQKFLLN-GFRCQTCGYKFHEHCSTKVPTMC 49 (52)
T ss_dssp CEECTTSSSEECS-EEECTTTTCCBCSTTSSSSSSCC
T ss_pred CcCCCCccccccc-CCEeCCCCCeEChhHHhhCcCcC
Confidence 3579999998773 34665 66555556666554444
No 245
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.35 E-value=54 Score=23.22 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=25.7
Q ss_pred eeeecccccccc---ccccccc-CCeeecccchhccCCCCC
Q 020280 85 VFDCPICYESLT---APVFQCE-NGHIACSTCCSKIMNKCP 121 (328)
Q Consensus 85 ~l~CpiC~~~l~---~Pv~~c~-CGH~fC~~C~~~~~~~CP 121 (328)
.-.|.+|..+|. ..-++|. |+-.+=..|..++...|+
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~ 74 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCT 74 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCC
T ss_pred CcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCC
Confidence 356999999876 2445776 776666778877655564
No 246
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.24 E-value=53 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.7
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~~~ 39 (46)
T 2em0_A 11 KTWKCR--ECDMCFSQASSLRLHQNVHVGEK 39 (46)
T ss_dssp CCCCCS--SSCCCCSSHHHHHHHGGGGSSSS
T ss_pred cCeECC--CCCcccCCHHHHHHHHHHcCCCC
Confidence 567787 487655 4678999987643333
No 247
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.00 E-value=49 Score=19.70 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=19.0
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.|+.|+ .|+... ....|..|....|..+
T Consensus 7 kp~~C~--~CgK~F~~~s~L~~H~py~C~~r 35 (36)
T 1fv5_A 7 ARFMCL--PCGIAFSSPSTLEAHQAYYCSHR 35 (36)
T ss_dssp CCCEET--TTTEECSCHHHHHHHHHHTSTTC
T ss_pred cCeECC--CCCCccCCHhHccCcCCeECcCC
Confidence 467787 588665 4678888886555543
No 248
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.89 E-value=49 Score=19.64 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=18.6
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2ep0_A 11 KPYKCD--VCHKSFRYGSSLTVHQRIHTGEK 39 (46)
T ss_dssp CSEECS--SSCCEESSHHHHHHHHTTTSSSC
T ss_pred CCeeCc--ccCcccCChHHHHHHHHHhCCCC
Confidence 467787 487665 4578899987644333
No 249
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.86 E-value=35 Score=23.88 Aligned_cols=34 Identities=21% Similarity=0.674 Sum_probs=19.5
Q ss_pred CCeeeeccccccccc-cccc-ccCCeeecccchhcc
Q 020280 83 PEVFDCPICYESLTA-PVFQ-CENGHIACSTCCSKI 116 (328)
Q Consensus 83 ~~~l~CpiC~~~l~~-Pv~~-c~CGH~fC~~C~~~~ 116 (328)
++-|.|..|...|.. .-|. -..|..+|..|..+.
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 345667777777642 2222 246677777776554
No 250
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=20.81 E-value=48 Score=32.78 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=28.6
Q ss_pred CCCeeeecccccccc---ccccccc-CCeeecccchhccCCCCC
Q 020280 82 DPEVFDCPICYESLT---APVFQCE-NGHIACSTCCSKIMNKCP 121 (328)
Q Consensus 82 d~~~l~CpiC~~~l~---~Pv~~c~-CGH~fC~~C~~~~~~~CP 121 (328)
....-.|.+|...+. ..-+.|. ||-.+|+.|...+ ..|+
T Consensus 526 ~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~ 568 (587)
T 3ky9_A 526 FEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCG 568 (587)
T ss_dssp CSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC-
T ss_pred CCCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCC
Confidence 344568999999874 2345787 9999999999987 4554
No 251
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=20.75 E-value=71 Score=19.47 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.8
Q ss_pred CCccCCCCCCCcccccchHhhHhhh
Q 020280 172 VPCSCPIPDCNFVGSANHLYKHFSA 196 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g~~~~L~~Hl~~ 196 (328)
..+.||+ ..+-.+....|..|+..
T Consensus 4 ~~v~CPy-d~~H~i~~~~l~~Hl~k 27 (37)
T 2vy4_A 4 EVVICPY-DSNHHMPKSSLAKHMAS 27 (37)
T ss_dssp CCEECTT-TSSCEECGGGHHHHHHH
T ss_pred eEEECCC-CCCeEeCHHHHHHHHHH
Confidence 4567886 47778889999999875
No 252
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.59 E-value=48 Score=21.28 Aligned_cols=27 Identities=33% Similarity=0.758 Sum_probs=14.5
Q ss_pred eeeeccccc-ccccccccccCCeeecccchh
Q 020280 85 VFDCPICYE-SLTAPVFQCENGHIACSTCCS 114 (328)
Q Consensus 85 ~l~CpiC~~-~l~~Pv~~c~CGH~fC~~C~~ 114 (328)
.+.||.|.. .|. |--.-|.++|..|-.
T Consensus 5 ~~~CP~C~~~~l~---~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELI---YDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEE---EETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceE---EcCCCCeEECcccCC
Confidence 467888866 221 112345666666643
No 253
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=20.51 E-value=56 Score=20.61 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=29.2
Q ss_pred CCceEEee-cccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 152 GCKVTMSY-GKKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 152 GC~~~~~~-~~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
-|...+.. ..+..|... -.-.++.|+ .|+... ....|..|+...|...
T Consensus 7 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 7 VCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TTCCCBSCHHHHHHHHHTTTSSCSEECT--TTCCEESSHHHHHHHHTTTSCCS
T ss_pred CCccccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHHHHHHHcCCc
Confidence 36554433 445566543 234567887 477665 4678888887777643
No 254
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.50 E-value=76 Score=16.04 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=15.7
Q ss_pred CccCCCCCCCccc-ccchHhhHhhhh
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSAK 197 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~~ 197 (328)
++.|+ .|+... ....|..|....
T Consensus 2 ~~~C~--~C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCE--VCTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCT--TTCCBCSSHHHHHHHHHHH
T ss_pred CeECC--CCCcccCCHHHHHHHHHHh
Confidence 56777 477655 457888998753
No 255
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.48 E-value=60 Score=20.13 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=22.8
Q ss_pred CceEEee-cccccccCC-CCCCCccCCCCCCCccc-ccchHhhHhhhhc
Q 020280 153 CKVTMSY-GKKHDHEKI-CPHVPCSCPIPDCNFVG-SANHLYKHFSAKH 198 (328)
Q Consensus 153 C~~~~~~-~~~~~He~~-C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H 198 (328)
|...+.. ..+..|+.. -.-.++.|+ .|+... ....|..|+...+
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~ 53 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKA 53 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECS--SSSCEESSHHHHHHHHHSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCC--CCCchhcCHHHHHHHHHHhc
Confidence 5443332 334455432 223556776 366555 4566777776544
No 256
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.47 E-value=52 Score=19.45 Aligned_cols=28 Identities=21% Similarity=0.486 Sum_probs=19.0
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k 39 (46)
T 2epw_A 11 KPCKCT--ECGKAFCWKSQLIMHQRTHVDDK 39 (46)
T ss_dssp CSEECS--SSCCEESSSHHHHHHHHHCCSCC
T ss_pred CCeeCC--CCCCccCCHHHHHHHHHHhCCCC
Confidence 567887 487665 4678999987644333
No 257
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.30 E-value=47 Score=28.34 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=9.4
Q ss_pred Ceeeecccccccc
Q 020280 84 EVFDCPICYESLT 96 (328)
Q Consensus 84 ~~l~CpiC~~~l~ 96 (328)
..+.|++|..+..
T Consensus 170 ~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 170 KFHLCPICGYIHK 182 (202)
T ss_dssp CEEECSSSCCEEE
T ss_pred cEEEECCCCCEEc
Confidence 4678888887654
No 258
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.30 E-value=68 Score=16.50 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.4
Q ss_pred CccCCCCCCCccc-ccchHhhHhhhhcC
Q 020280 173 PCSCPIPDCNFVG-SANHLYKHFSAKHK 199 (328)
Q Consensus 173 ~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~ 199 (328)
++.|+ .|+... ....|..|+...|.
T Consensus 2 ~~~C~--~C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACG--LCNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCT--TTCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCc--ccCcccCChHHHHHHHHHHcc
Confidence 56776 477655 45788899555554
No 259
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=57 Score=19.32 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.8
Q ss_pred CCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 172 VPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
.++.|+ .|+... ....|..|+.......
T Consensus 11 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2eoq_A 11 KPFKCD--ICGKSFCGRSRLNRHSMVHTAEK 39 (46)
T ss_dssp CSCCCS--SSCCCCSSHHHHHHHHHHTTCCC
T ss_pred CCcCCC--cCCchhCCHHHHHHHHHHcCCCC
Confidence 567787 477655 5678999987644433
No 260
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.04 E-value=49 Score=19.64 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=19.1
Q ss_pred CCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280 171 HVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS 201 (328)
Q Consensus 171 ~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~ 201 (328)
-.++.|+ .|+... ....|..|+.......
T Consensus 10 ~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k 39 (46)
T 2ytg_A 10 EKPFKCG--ECGKSYNQRVHLTQHQRVHTGEK 39 (46)
T ss_dssp CCSEECT--TTCCEESSSHHHHTTGGGGSSCC
T ss_pred CCCeECC--CCCcccCCHHHHHHHHHHcCCCC
Confidence 3567887 487665 4678889987644433
Done!