Query 020281
Match_columns 328
No_of_seqs 215 out of 821
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01419 Jacalin: Jacalin-like 100.0 2.6E-28 5.7E-33 206.1 14.9 128 24-155 1-130 (130)
2 PLN02193 nitrile-specifier pro 100.0 1.6E-27 3.4E-32 240.7 18.7 140 13-155 2-143 (470)
3 PF01419 Jacalin: Jacalin-like 99.9 1E-20 2.2E-25 159.7 14.9 125 123-273 1-130 (130)
4 PLN02193 nitrile-specifier pro 99.8 2.4E-18 5.2E-23 174.0 15.9 138 113-273 3-143 (470)
5 KOG4525 Jacalin-like lectin do 98.4 6.3E-07 1.4E-11 89.0 7.1 127 12-153 481-613 (614)
6 KOG4525 Jacalin-like lectin do 98.0 1.1E-05 2.4E-10 80.4 7.6 121 116-271 486-613 (614)
7 PF14584 DUF4446: Protein of u 30.2 41 0.0009 29.5 2.4 30 233-264 87-125 (151)
8 TIGR02781 VirB9 P-type conjuga 21.8 3.4E+02 0.0073 25.4 7.0 41 73-116 50-104 (243)
9 PRK13885 conjugal transfer pro 17.7 2.7E+02 0.0058 27.2 5.5 16 73-89 90-105 (299)
10 PRK13839 conjugal transfer pro 16.5 1.5E+02 0.0033 28.6 3.4 14 103-116 128-141 (277)
No 1
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=99.96 E-value=2.6e-28 Score=206.08 Aligned_cols=128 Identities=47% Similarity=0.940 Sum_probs=114.6
Q ss_pred CCccccCCCCcEEEEEEEEC-CeeeEEEEEEecCCceeeecccCCCCCCeeeEEEccCCCceEEEEEEEEeceecCCCeE
Q 020281 24 GARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGRGGFKTNKVKFNYPEEFLVSVGGYYGGIIDYGPVL 102 (328)
Q Consensus 24 G~~fddg~~~~I~~I~I~~g-~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~~~~Ld~p~EyIt~VsG~~g~~~~~g~~~ 102 (328)
|+.|||+.+++|++|.|+++ +.|++|||.|++.+..+++..||..++....+|.|++|+||||+|+|+++. +..+
T Consensus 1 g~~~d~g~~~~v~~i~v~~~~~~I~~Iq~~Y~~~~g~~~~~~~G~~~g~~~~~~~l~~~~E~It~isG~~~~----~~~~ 76 (130)
T PF01419_consen 1 GDSWDDGGHDGVKKIVVIYGGDGIDGIQFTYDDGGGQVWGQQHGGNGGGSTKEFELDDPDEYITSISGTYGK----GHDY 76 (130)
T ss_dssp SEEEEEECSSEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEECSSSTEEEEEEEETTTS-EEEEEEEEEE----TEEE
T ss_pred CCcccCCCCCCCEEEEEEECCCEEEEEEEEEECCCceEEeeccCcccccCccceEECCCccEEEEEEEEEEc----CccE
Confidence 68899999999999999876 899999999976666688999999987567899999789999999999986 2458
Q ss_pred EEEEEEEECCCccccCCCCCCceEEecC-CCCeEEEEEEEeCCcEeEEEEEEec
Q 020281 103 VRSLVFESNKRKYGPFGLQQGTHFSLPM-AGGMIAGFHGRSSWFLESIGVHLKP 155 (328)
Q Consensus 103 I~sLtF~Tnk~~~gpfG~~~G~~Fs~~~-~g~~IvGF~Grsg~~ldsIG~~~~~ 155 (328)
|++|+|+||++++.|+|+..|++|+++. .+++|+||+||++++||+|||||.|
T Consensus 77 I~sL~F~Tnkg~~~~~gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~~p 130 (130)
T PF01419_consen 77 ITSLTFTTNKGRYSPFGGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYFTP 130 (130)
T ss_dssp EEEEEEEESSSEEEEEECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEecCCcccCcccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEEeC
Confidence 9999999999999988889999999987 5789999999999999999999986
No 2
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=1.6e-27 Score=240.70 Aligned_cols=140 Identities=31% Similarity=0.594 Sum_probs=126.9
Q ss_pred cEEecceeCCCCCccccCCCCcEEEEEEEEC-CeeeEEEEEEecCCceeeecccCCCCCCeeeEEEccCCCceEEEEEEE
Q 020281 13 HVTVGPWGGQNGARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGRGGFKTNKVKFNYPEEFLVSVGGY 91 (328)
Q Consensus 13 ~~k~gp~GG~gG~~fddg~~~~I~~I~I~~g-~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~~~~Ld~p~EyIt~VsG~ 91 (328)
..|+++|||++|+.|||+.+++|++|.|.++ ..|++|+|.|+++++.+++..||...+...+||+|+ |+||||+|+|+
T Consensus 2 ~~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~~~~~~~~~~-~~e~~~~v~g~ 80 (470)
T PLN02193 2 AQKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID-ADDYIVYVEGY 80 (470)
T ss_pred ceeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCCCCcEEEEEC-CCCcEEEEEEE
Confidence 3799999999999999999999999999998 599999999998888887888998876556899999 99999999999
Q ss_pred EeceecCCCeEEEEEEEEECC-CccccCCCCCCceEEecCCCCeEEEEEEEeCCcEeEEEEEEec
Q 020281 92 YGGIIDYGPVLVRSLVFESNK-RKYGPFGLQQGTHFSLPMAGGMIAGFHGRSSWFLESIGVHLKP 155 (328)
Q Consensus 92 ~g~~~~~g~~~I~sLtF~Tnk-~~~gpfG~~~G~~Fs~~~~g~~IvGF~Grsg~~ldsIG~~~~~ 155 (328)
|+........+|+||+|+||| ++++|||...|++|.+ .+++|+|||||++..+++||+|+..
T Consensus 81 ~~~~~~~~~~~i~~l~f~t~~~~~~~~~g~~~g~~f~~--~~~~ivgf~G~~~~~~~~ig~y~~~ 143 (470)
T PLN02193 81 REKVNDMTSEMITFLSFKTYKGKTSHPIEKRPGVKFVL--QGGKIVGFHGRSTDVLHSLGAYISL 143 (470)
T ss_pred ecCcCCCCceeEEEEEEEeCCCccccccccCCCCEEEE--cCCeEEEEeccCCCcEEeeEEEEec
Confidence 998754455799999999999 6899999999999997 4899999999999999999999875
No 3
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=99.86 E-value=1e-20 Score=159.74 Aligned_cols=125 Identities=23% Similarity=0.180 Sum_probs=95.3
Q ss_pred CceEEecCCCCeEEEEEEEeC-CcEeEEEEEEecCCCCCCCCccccCcCccccCCCCCCCCceEEEEeccccCCCCCCce
Q 020281 123 GTHFSLPMAGGMIAGFHGRSS-WFLESIGVHLKPLLIQNPPINLSSASQNYVSNEIPEKSRGFEMATTREKQDSIYQPEI 201 (328)
Q Consensus 123 G~~Fs~~~~g~~IvGF~Grsg-~~ldsIG~~~~~~~~~~p~~~~~~~~~~~gg~g~~~~g~~~~i~l~r~~~~~i~p~E~ 201 (328)
|+.|+.... ..|.-+..+.+ ..|++|.|.|..... .. ++..++..+. ....++.|. .|+||
T Consensus 1 g~~~d~g~~-~~v~~i~v~~~~~~I~~Iq~~Y~~~~g------~~-~~~~~G~~~g---~~~~~~~l~-------~~~E~ 62 (130)
T PF01419_consen 1 GDSWDDGGH-DGVKKIVVIYGGDGIDGIQFTYDDGGG------QV-WGQQHGGNGG---GSTKEFELD-------DPDEY 62 (130)
T ss_dssp SEEEEEECS-SEEEEEEEEEESSSEEEEEEEEEETTE------EE-EEEEEECSSS---TEEEEEEEE-------TTTS-
T ss_pred CCcccCCCC-CCCEEEEEEECCCEEEEEEEEEECCCc------eE-EeeccCcccc---cCccceEEC-------CCccE
Confidence 456666532 45666666554 689999999987532 11 2333444431 256788884 58999
Q ss_pred EEEEEEEEcCcccCCceeeEEEEEEEEECCCceeecCCCCcCCceEEe----CCEEEEEEEeeCCccceeeeEEee
Q 020281 202 LIHKSGYSGSAILRGTTTTVVKSVTFLTNRRMHGPSGAGDEQGIFFSN----NGIIAGLPARKGRFIDSIGPHFIE 273 (328)
Q Consensus 202 it~v~G~~g~~~~~g~~~~~I~sL~F~Tn~~~~gpfg~G~~~G~~F~~----~~~IvGF~Grsg~~ldaIGvy~~~ 273 (328)
|++|+|+++. ...+|++|+|+||++++.|| |...|++|++ +++|||||||++++||+|||||.|
T Consensus 63 It~isG~~~~------~~~~I~sL~F~Tnkg~~~~~--gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~~p 130 (130)
T PF01419_consen 63 ITSISGTYGK------GHDYITSLTFTTNKGRYSPF--GGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYFTP 130 (130)
T ss_dssp EEEEEEEEEE------TEEEEEEEEEEESSSEEEEE--ECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEEEc------CccEEEEEEEEecCCcccCc--ccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEEeC
Confidence 9999999996 13789999999999999998 5588999997 789999999999999999999986
No 4
>PLN02193 nitrile-specifier protein
Probab=99.78 E-value=2.4e-18 Score=174.01 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=108.0
Q ss_pred CccccCCCCCCceEEecCCCCeEEEEEEEeCC-cEeEEEEEEecCCCCCCCCccccCcCccccCCCCCCCCceEEEEecc
Q 020281 113 RKYGPFGLQQGTHFSLPMAGGMIAGFHGRSSW-FLESIGVHLKPLLIQNPPINLSSASQNYVSNEIPEKSRGFEMATTRE 191 (328)
Q Consensus 113 ~~~gpfG~~~G~~Fs~~~~g~~IvGF~Grsg~-~ldsIG~~~~~~~~~~p~~~~~~~~~~~gg~g~~~~g~~~~i~l~r~ 191 (328)
.|..++|+.+|..++..+ -..|.-++.+.+. .|++|.|.|.... +.. .+..+|... .....++.|
T Consensus 3 ~~~~~~gg~~g~~wddg~-~~~v~~i~~~~~~~~i~~~~~~y~~~~------~~~-~~~~~g~~~---~~~~~~~~~--- 68 (470)
T PLN02193 3 QKLEAKGGETGDVWDDGV-YDNVRKVYVGQGQYGIAFVKFEYVNGS------QVV-VGDEHGKKT---ELGVEEFEI--- 68 (470)
T ss_pred eeeccccCCCCCcCcCCC-cCCeEEEEEEeCCCEEEEEEEEEeCCC------cEE-EeccCCCCC---CCCcEEEEE---
Confidence 467889999999988543 3568888988885 8999999997421 111 222222221 023467888
Q ss_pred ccCCCCCCceEEEEEEEEcCcccCCceeeEEEEEEEEECCC-ceeecCCCCcCCceEEe-CCEEEEEEEeeCCccceeee
Q 020281 192 KQDSIYQPEILIHKSGYSGSAILRGTTTTVVKSVTFLTNRR-MHGPSGAGDEQGIFFSN-NGIIAGLPARKGRFIDSIGP 269 (328)
Q Consensus 192 ~~~~i~p~E~it~v~G~~g~~~~~g~~~~~I~sL~F~Tn~~-~~gpfg~G~~~G~~F~~-~~~IvGF~Grsg~~ldaIGv 269 (328)
.|+||||+|+|+|++.. +....+|+||+|+|||+ +++|| |.+.|++|.+ +++|||||||++.+|++||+
T Consensus 69 -----~~~e~~~~v~g~~~~~~--~~~~~~i~~l~f~t~~~~~~~~~--g~~~g~~f~~~~~~ivgf~G~~~~~~~~ig~ 139 (470)
T PLN02193 69 -----DADDYIVYVEGYREKVN--DMTSEMITFLSFKTYKGKTSHPI--EKRPGVKFVLQGGKIVGFHGRSTDVLHSLGA 139 (470)
T ss_pred -----CCCCcEEEEEEEecCcC--CCCceeEEEEEEEeCCCcccccc--ccCCCCEEEEcCCeEEEEeccCCCcEEeeEE
Confidence 89999999999999974 22347999999999995 78999 9999999999 99999999999999999999
Q ss_pred EEee
Q 020281 270 HFIE 273 (328)
Q Consensus 270 y~~~ 273 (328)
|+..
T Consensus 140 y~~~ 143 (470)
T PLN02193 140 YISL 143 (470)
T ss_pred EEec
Confidence 9864
No 5
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]
Probab=98.39 E-value=6.3e-07 Score=88.99 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=97.4
Q ss_pred ccEEeccee-CCCCCccccCCC--CcEEEEEEEECCeeeEEEEEEecCCceeeecccCCCCCCeeeEEEccCCCceEEEE
Q 020281 12 DHVTVGPWG-GQNGARWDDGVF--SSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGRGGFKTNKVKFNYPEEFLVSV 88 (328)
Q Consensus 12 ~~~k~gp~G-G~gG~~fddg~~--~~I~~I~I~~g~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~~~~Ld~p~EyIt~V 88 (328)
.+.++.-+| |.+|++-..-.+ -.|+.|+|++|.++|+|.+.|.+. +...|...|+ .+.|+| |++-|...
T Consensus 481 tVq~s~~ygr~~~gkei~lia~~~r~it~ir~~cg~aldg~~~~ygeE-----svl~g~~~~s-~hdf~l--~gs~i~gf 552 (614)
T KOG4525|consen 481 TVQLSRDYGRGCNGKEIRLIAPSSRPITLIRLRCGQALDGLVAHYGEE-----SVLEGPYVGS-PHDFQL--PGSLIHGF 552 (614)
T ss_pred cEEechhhcCCCCCceeeeeccccccceEEEEeccccccceEEEeccc-----ceeecccCCC-ccceec--chhhhhhH
Confidence 577888898 567887764433 369999999999999999999421 2346666664 688988 68988888
Q ss_pred EEEEeceecCCCeEEEEEEEEECC-CccccCCCCCCceE-EecC-CCCeEEEEEEEeCCcEeEEEEEE
Q 020281 89 GGYYGGIIDYGPVLVRSLVFESNK-RKYGPFGLQQGTHF-SLPM-AGGMIAGFHGRSSWFLESIGVHL 153 (328)
Q Consensus 89 sG~~g~~~~~g~~~I~sLtF~Tnk-~~~gpfG~~~G~~F-s~~~-~g~~IvGF~Grsg~~ldsIG~~~ 153 (328)
.-+++. +|+.+++.|.. ++...+|+..|--| +..+ .+.+|+||+|+-|.++|+|||.+
T Consensus 553 ~~rCga-------wVd~isI~t~~G~t~~~~gn~~ggg~~s~~~pkg~~lvg~~g~lg~~mds~g~~~ 613 (614)
T KOG4525|consen 553 AERCGA-------WVDGISILTTSGDTKRLSGNSSGGGLKSYLVPKGFQLVGFYGTLGPFMDSIGFFI 613 (614)
T ss_pred Hhhhcc-------ceeeEEEEecCCccccccccCCCCccceecCCCceEEEEEeccccchhhheeeec
Confidence 777775 69999776655 67778898765444 3333 57899999999999999999986
No 6
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=80.39 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=91.0
Q ss_pred ccCCC-CCCceEEecC-CCCeEEEEEEEeCCcEeEEEEEEecCCCCCCCCccccCcCccccCCCCCCCCceEEEEecccc
Q 020281 116 GPFGL-QQGTHFSLPM-AGGMIAGFHGRSSWFLESIGVHLKPLLIQNPPINLSSASQNYVSNEIPEKSRGFEMATTREKQ 193 (328)
Q Consensus 116 gpfG~-~~G~~Fs~~~-~g~~IvGF~Grsg~~ldsIG~~~~~~~~~~p~~~~~~~~~~~gg~g~~~~g~~~~i~l~r~~~ 193 (328)
.-+|. .+|+...+-+ ....|.-+..++|..||+|-++|.... .+. + -.. +..+|..|
T Consensus 486 ~~ygr~~~gkei~lia~~~r~it~ir~~cg~aldg~~~~ygeEs------vl~--g----~~~----~s~hdf~l----- 544 (614)
T KOG4525|consen 486 RDYGRGCNGKEIRLIAPSSRPITLIRLRCGQALDGLVAHYGEES------VLE--G----PYV----GSPHDFQL----- 544 (614)
T ss_pred hhhcCCCCCceeeeeccccccceEEEEeccccccceEEEecccc------eee--c----ccC----CCccceec-----
Confidence 34442 3466655433 245788899999999999999994321 121 1 112 56788887
Q ss_pred CCCCCCceEEEEEEEEcCcccCCceeeEEEEEEEEECCCceeecCCCCcCCceEEe-----CCEEEEEEEeeCCccceee
Q 020281 194 DSIYQPEILIHKSGYSGSAILRGTTTTVVKSVTFLTNRRMHGPSGAGDEQGIFFSN-----NGIIAGLPARKGRFIDSIG 268 (328)
Q Consensus 194 ~~i~p~E~it~v~G~~g~~~~~g~~~~~I~sL~F~Tn~~~~gpfg~G~~~G~~F~~-----~~~IvGF~Grsg~~ldaIG 268 (328)
|++.|....-++|.| |..+++.|..++.-+| +|+..|.-|.. +.+||||+|+-|.++|+||
T Consensus 545 ----~gs~i~gf~~rCgaw---------Vd~isI~t~~G~t~~~-~gn~~ggg~~s~~~pkg~~lvg~~g~lg~~mds~g 610 (614)
T KOG4525|consen 545 ----PGSLIHGFAERCGAW---------VDGISILTTSGDTKRL-SGNSSGGGLKSYLVPKGFQLVGFYGTLGPFMDSIG 610 (614)
T ss_pred ----chhhhhhHHhhhccc---------eeeEEEEecCCccccc-cccCCCCccceecCCCceEEEEEeccccchhhhee
Confidence 699999888888877 8899999988888776 49998876653 8999999999999999999
Q ss_pred eEE
Q 020281 269 PHF 271 (328)
Q Consensus 269 vy~ 271 (328)
+.+
T Consensus 611 ~~~ 613 (614)
T KOG4525|consen 611 FFI 613 (614)
T ss_pred eec
Confidence 975
No 7
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=30.20 E-value=41 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=23.2
Q ss_pred ceeecCCCCcCC-ceEEe-------CCEEE-EEEEeeCCcc
Q 020281 233 MHGPSGAGDEQG-IFFSN-------NGIIA-GLPARKGRFI 264 (328)
Q Consensus 233 ~~gpfg~G~~~G-~~F~~-------~~~Iv-GF~Grsg~~l 264 (328)
+|-+| .+..| -+|++ +|-|+ +.|||.++++
T Consensus 87 RYnAF--~dmGg~LSFslAlLD~~~nGvVltsI~~Re~s~~ 125 (151)
T PF14584_consen 87 RYNAF--EDMGGDLSFSLALLDDNNNGVVLTSIHSREESRT 125 (151)
T ss_pred EccCc--ccccccceeeeEEEeCCCCEEEEEeeecCCCcEE
Confidence 68889 88777 47987 44444 9999999985
No 8
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=21.82 E-value=3.4e+02 Score=25.38 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred eeEEEccCCCceEEEEEEEEeceecC-----C---------CeEEEEEEEEECCCccc
Q 020281 73 TNKVKFNYPEEFLVSVGGYYGGIIDY-----G---------PVLVRSLVFESNKRKYG 116 (328)
Q Consensus 73 ~~~~~Ld~p~EyIt~VsG~~g~~~~~-----g---------~~~I~sLtF~Tnk~~~g 116 (328)
...|.|+ |||-|+.|. .|....| + ...-+.|++.||+|+|-
T Consensus 50 ~T~I~f~-~gE~I~~v~--~GDt~~W~v~~~~n~i~IKP~~~~~~TNl~V~TnkR~Y~ 104 (243)
T TIGR02781 50 STTIEFA-DDETIKTVA--VGDSKAWEVTPNGNKLFIKPTEKDWKTNMTVVTNKRSYV 104 (243)
T ss_pred EEEEEeC-CCCEEEEec--ccCCcceEEEcCCCEEEEEECCCCCCceEEEEECCeEEE
Confidence 4577777 777776653 2222112 1 11235688888887754
No 9
>PRK13885 conjugal transfer protein TrbG; Provisional
Probab=17.73 E-value=2.7e+02 Score=27.22 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=11.6
Q ss_pred eeEEEccCCCceEEEEE
Q 020281 73 TNKVKFNYPEEFLVSVG 89 (328)
Q Consensus 73 ~~~~~Ld~p~EyIt~Vs 89 (328)
...|.|+ |+|-|..|.
T Consensus 90 vt~I~L~-pgE~I~~v~ 105 (299)
T PRK13885 90 VCDIALQ-PGEQVNSIN 105 (299)
T ss_pred EEEEEEC-CCCEEeeec
Confidence 4678887 888877663
No 10
>PRK13839 conjugal transfer protein TrbG; Provisional
Probab=16.50 E-value=1.5e+02 Score=28.59 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=10.2
Q ss_pred EEEEEEEECCCccc
Q 020281 103 VRSLVFESNKRKYG 116 (328)
Q Consensus 103 I~sLtF~Tnk~~~g 116 (328)
-++|++.||+|+|-
T Consensus 128 ~TNL~V~TnkRtY~ 141 (277)
T PRK13839 128 VTSMVVTTSRRTYH 141 (277)
T ss_pred cceEEEEeCCcEEE
Confidence 36788888887754
Done!