Query 020283
Match_columns 328
No_of_seqs 156 out of 760
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 7.6E-60 1.6E-64 448.9 21.6 287 2-307 3-298 (300)
2 KOG2922 Uncharacterized conser 100.0 7.1E-60 1.5E-64 441.3 12.8 288 1-307 16-312 (335)
3 PRK02971 4-amino-4-deoxy-L-ara 99.1 4.1E-10 8.8E-15 95.0 8.3 117 6-127 2-122 (129)
4 TIGR03340 phn_DUF6 phosphonate 98.8 2.9E-07 6.3E-12 86.6 18.2 250 8-292 3-269 (281)
5 PRK15051 4-amino-4-deoxy-L-ara 98.7 8.3E-08 1.8E-12 78.9 9.0 102 10-126 5-108 (111)
6 TIGR00950 2A78 Carboxylate/Ami 98.5 8.6E-06 1.9E-10 75.0 18.6 201 58-293 50-251 (260)
7 PRK11453 O-acetylserine/cystei 98.5 9.3E-06 2E-10 77.2 18.1 192 70-292 74-273 (299)
8 PF10639 UPF0546: Uncharacteri 98.4 2.1E-07 4.5E-12 76.6 4.1 104 19-126 9-113 (113)
9 TIGR00776 RhaT RhaT L-rhamnose 98.3 7.5E-05 1.6E-09 71.0 19.9 205 56-291 57-269 (290)
10 COG2510 Predicted membrane pro 98.3 3.4E-06 7.4E-11 70.6 9.1 111 9-126 6-138 (140)
11 PRK15430 putative chlorampheni 98.3 3.3E-05 7.1E-10 73.4 15.9 122 1-126 3-144 (296)
12 PF13536 EmrE: Multidrug resis 98.2 4.5E-06 9.7E-11 68.3 7.4 66 61-127 41-106 (113)
13 PF08449 UAA: UAA transporter 98.2 0.00023 5E-09 67.9 19.7 218 58-296 67-287 (303)
14 PRK11689 aromatic amino acid e 98.1 0.00035 7.6E-09 66.3 18.1 67 61-127 67-137 (295)
15 TIGR00817 tpt Tpt phosphate/ph 98.0 0.0002 4.3E-09 68.0 15.9 67 58-125 69-135 (302)
16 PRK11272 putative DMT superfam 98.0 0.00032 7E-09 66.4 17.0 202 60-300 74-284 (292)
17 COG0697 RhaT Permeases of the 98.0 0.0011 2.5E-08 60.9 18.9 69 60-128 75-144 (292)
18 PRK10452 multidrug efflux syst 97.9 7.4E-05 1.6E-09 62.3 9.7 72 58-129 33-105 (120)
19 PRK10532 threonine and homoser 97.9 0.0022 4.7E-08 60.8 20.1 249 5-296 11-271 (293)
20 PRK09541 emrE multidrug efflux 97.8 0.00018 4E-09 59.1 9.5 71 59-129 34-105 (110)
21 PLN00411 nodulin MtN21 family 97.8 0.0011 2.4E-08 65.1 16.3 60 68-127 91-156 (358)
22 PF06027 DUF914: Eukaryotic pr 97.7 0.0017 3.6E-08 63.3 16.9 76 53-128 75-152 (334)
23 PTZ00343 triose or hexose phos 97.7 0.0029 6.2E-08 61.8 18.5 69 57-126 117-185 (350)
24 PF04142 Nuc_sug_transp: Nucle 97.7 0.00049 1.1E-08 64.1 12.4 69 61-129 23-91 (244)
25 PRK10532 threonine and homoser 97.7 0.00015 3.2E-09 68.9 8.5 127 5-132 147-286 (293)
26 PF00893 Multi_Drug_Res: Small 97.6 0.00051 1.1E-08 54.5 8.6 85 12-118 7-93 (93)
27 TIGR00688 rarD rarD protein. T 97.6 0.0053 1.1E-07 56.7 16.6 62 65-126 80-141 (256)
28 PF06800 Sugar_transport: Suga 97.5 0.003 6.4E-08 59.7 13.9 77 57-133 44-128 (269)
29 TIGR00950 2A78 Carboxylate/Ami 97.4 0.00093 2E-08 61.4 9.9 119 4-122 126-259 (260)
30 PF00892 EamA: EamA-like trans 97.3 0.00017 3.7E-09 58.1 3.4 68 58-125 57-124 (126)
31 KOG4510 Permease of the drug/m 97.3 0.00093 2E-08 62.7 7.8 205 67-300 109-319 (346)
32 PLN00411 nodulin MtN21 family 97.2 0.0013 2.9E-08 64.5 8.6 118 4-127 187-328 (358)
33 PRK10650 multidrug efflux syst 97.2 0.0039 8.5E-08 51.1 10.0 69 57-125 36-106 (109)
34 PRK11431 multidrug efflux syst 97.0 0.0055 1.2E-07 49.9 9.2 66 60-125 34-100 (105)
35 PRK11272 putative DMT superfam 97.0 0.0037 8E-08 59.2 9.0 115 5-126 149-284 (292)
36 COG2076 EmrE Membrane transpor 97.0 0.0068 1.5E-07 49.4 9.0 69 57-125 31-101 (106)
37 PRK11689 aromatic amino acid e 96.9 0.0039 8.5E-08 59.1 8.8 113 5-126 155-286 (295)
38 TIGR03340 phn_DUF6 phosphonate 96.7 0.0013 2.9E-08 61.8 3.7 119 6-124 144-280 (281)
39 PRK11453 O-acetylserine/cystei 96.7 0.0095 2.1E-07 56.6 9.2 121 5-125 142-285 (299)
40 COG0697 RhaT Permeases of the 95.9 0.016 3.5E-07 53.2 5.8 121 5-127 153-287 (292)
41 PRK13499 rhamnose-proton sympo 95.8 0.15 3.3E-06 49.9 12.6 128 3-134 4-160 (345)
42 COG2510 Predicted membrane pro 95.8 0.015 3.3E-07 49.0 4.6 98 191-292 5-125 (140)
43 PRK15430 putative chlorampheni 95.5 0.025 5.4E-07 53.7 5.8 62 66-127 224-285 (296)
44 KOG2234 Predicted UDP-galactos 95.4 0.27 5.8E-06 48.0 12.5 69 58-126 95-163 (345)
45 COG2962 RarD Predicted permeas 94.7 1.5 3.2E-05 41.9 15.0 202 49-294 62-271 (293)
46 TIGR00776 RhaT RhaT L-rhamnose 94.6 0.053 1.1E-06 51.6 5.1 115 5-126 151-287 (290)
47 KOG3912 Predicted integral mem 94.5 0.31 6.7E-06 46.5 9.8 71 58-128 89-159 (372)
48 PRK15051 4-amino-4-deoxy-L-ara 94.5 0.34 7.3E-06 39.6 8.9 65 225-292 31-95 (111)
49 PF00893 Multi_Drug_Res: Small 94.5 0.17 3.8E-06 39.9 7.0 53 240-294 38-90 (93)
50 PF03151 TPT: Triose-phosphate 94.0 0.23 4.9E-06 41.7 7.3 118 7-124 1-150 (153)
51 PF06027 DUF914: Eukaryotic pr 94.0 0.29 6.2E-06 47.8 8.8 128 3-131 165-309 (334)
52 KOG2765 Predicted membrane pro 93.3 0.29 6.2E-06 48.3 7.4 60 73-132 177-236 (416)
53 PRK02971 4-amino-4-deoxy-L-ara 92.2 1.2 2.7E-05 37.4 8.9 64 237-302 54-123 (129)
54 TIGR00817 tpt Tpt phosphate/ph 90.0 0.25 5.4E-06 46.7 3.1 56 70-125 236-291 (302)
55 COG5006 rhtA Threonine/homoser 90.0 11 0.00024 35.6 13.6 74 224-300 202-276 (292)
56 PRK10650 multidrug efflux syst 89.9 1.1 2.5E-05 36.6 6.4 65 224-293 31-95 (109)
57 TIGR00803 nst UDP-galactose tr 89.9 1.5 3.2E-05 39.6 7.9 118 4-123 83-220 (222)
58 KOG4831 Unnamed protein [Funct 89.4 0.17 3.7E-06 41.2 1.1 77 50-126 47-124 (125)
59 PRK11431 multidrug efflux syst 89.2 1.5 3.2E-05 35.7 6.5 64 224-292 25-88 (105)
60 PF06800 Sugar_transport: Suga 88.0 0.76 1.6E-05 43.6 4.6 61 63-123 203-267 (269)
61 COG5006 rhtA Threonine/homoser 86.6 1.6 3.5E-05 41.1 5.8 124 3-128 145-283 (292)
62 PRK09541 emrE multidrug efflux 86.3 2.5 5.5E-05 34.6 6.3 72 224-300 26-102 (110)
63 COG1742 Uncharacterized conser 86.2 4.5 9.7E-05 32.9 7.4 48 83-131 60-107 (109)
64 KOG1583 UDP-N-acetylglucosamin 84.8 1.8 3.9E-05 41.3 5.3 77 55-131 64-141 (330)
65 PRK02237 hypothetical protein; 83.8 4.2 9.1E-05 33.3 6.3 48 83-131 61-108 (109)
66 PF00892 EamA: EamA-like trans 83.7 1.5 3.2E-05 34.7 3.8 53 237-292 60-112 (126)
67 COG2076 EmrE Membrane transpor 83.1 3.5 7.7E-05 33.6 5.7 66 225-295 27-92 (106)
68 PF08449 UAA: UAA transporter 82.2 4.9 0.00011 38.2 7.3 121 4-124 152-294 (303)
69 PRK10452 multidrug efflux syst 80.4 4.9 0.00011 33.5 5.8 59 240-300 39-102 (120)
70 PF13536 EmrE: Multidrug resis 80.0 13 0.00028 29.9 8.1 46 243-292 47-92 (113)
71 PF02694 UPF0060: Uncharacteri 79.8 4.7 0.0001 32.9 5.2 47 83-130 59-105 (107)
72 COG3169 Uncharacterized protei 78.6 10 0.00022 30.7 6.6 103 1-124 5-112 (116)
73 PTZ00343 triose or hexose phos 77.5 4.5 9.7E-05 39.5 5.5 50 75-124 296-345 (350)
74 PF04142 Nuc_sug_transp: Nucle 73.2 35 0.00076 31.6 10.0 112 4-117 112-243 (244)
75 KOG1581 UDP-galactose transpor 70.3 35 0.00076 33.1 9.3 67 66-132 94-160 (327)
76 PF10639 UPF0546: Uncharacteri 69.9 13 0.00027 30.7 5.5 57 225-285 39-95 (113)
77 KOG2765 Predicted membrane pro 69.3 19 0.00041 35.9 7.4 124 4-127 245-390 (416)
78 PF04657 DUF606: Protein of un 68.6 11 0.00024 31.9 5.2 67 57-123 66-137 (138)
79 KOG1441 Glucose-6-phosphate/ph 62.5 5.4 0.00012 38.8 2.3 69 58-127 87-155 (316)
80 KOG4314 Predicted carbohydrate 57.5 19 0.00042 32.9 4.7 60 68-127 66-125 (290)
81 PF04342 DUF486: Protein of un 57.0 7.9 0.00017 31.6 2.0 35 90-124 71-105 (108)
82 KOG2766 Predicted membrane pro 54.9 10 0.00022 36.1 2.6 55 74-128 97-151 (336)
83 KOG1583 UDP-N-acetylglucosamin 47.8 41 0.0009 32.3 5.5 36 92-127 279-314 (330)
84 COG4975 GlcU Putative glucose 46.5 10 0.00022 35.7 1.3 88 55-142 56-151 (288)
85 COG4858 Uncharacterized membra 45.5 1.4E+02 0.0031 27.1 8.1 58 54-111 157-220 (226)
86 KOG1580 UDP-galactose transpor 45.3 14 0.00031 34.7 2.0 40 92-131 278-317 (337)
87 KOG1580 UDP-galactose transpor 44.2 87 0.0019 29.6 6.9 60 65-128 95-158 (337)
88 PRK13499 rhamnose-proton sympo 42.3 47 0.001 32.7 5.2 40 87-127 295-341 (345)
89 COG4975 GlcU Putative glucose 36.8 5.6 0.00012 37.5 -2.0 61 66-126 220-284 (288)
90 PF11118 DUF2627: Protein of u 36.1 1.3E+02 0.0028 23.2 5.6 16 271-286 54-69 (77)
91 KOG1442 GDP-fucose transporter 35.9 5.7 0.00012 38.0 -2.2 58 64-121 111-168 (347)
92 PF06570 DUF1129: Protein of u 35.3 2.2E+02 0.0048 25.5 8.1 56 55-110 143-204 (206)
93 PF05653 Mg_trans_NIPA: Magnes 34.4 74 0.0016 30.5 5.1 76 53-128 207-293 (300)
94 COG2962 RarD Predicted permeas 31.3 1.1E+02 0.0023 29.6 5.5 67 225-294 66-132 (293)
95 KOG4510 Permease of the drug/m 29.8 25 0.00054 33.7 1.0 60 67-126 265-324 (346)
96 PF06609 TRI12: Fungal trichot 28.4 4.8E+02 0.01 27.7 10.3 61 55-117 108-168 (599)
97 PF04211 MtrC: Tetrahydrometha 26.3 5.7E+02 0.012 24.2 9.5 135 60-205 75-217 (262)
98 COG5522 Predicted integral mem 26.0 2.4E+02 0.0052 26.0 6.5 60 65-124 100-170 (236)
99 PF07857 DUF1632: CEO family ( 25.9 2.9E+02 0.0063 26.0 7.4 27 185-211 179-205 (254)
100 TIGR00803 nst UDP-galactose tr 25.7 4E+02 0.0087 23.6 8.2 46 244-292 165-210 (222)
101 PRK11469 hypothetical protein; 25.0 4.2E+02 0.0091 23.6 8.0 15 110-124 166-181 (188)
102 TIGR02840 spore_YtaF putative 21.9 5.9E+02 0.013 22.9 8.9 11 112-122 192-203 (206)
103 PF08019 DUF1705: Domain of un 20.7 4.4E+02 0.0096 22.4 7.1 75 135-217 54-128 (156)
104 COG0109 CyoE Polyprenyltransfe 20.4 8E+02 0.017 23.8 9.3 56 56-115 100-155 (304)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=7.6e-60 Score=448.93 Aligned_cols=287 Identities=30% Similarity=0.529 Sum_probs=255.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhchh
Q 020283 2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ 81 (328)
Q Consensus 2 ~~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~ 81 (328)
++|++|+.+|++||++++.|.++|||+|.|+++.+.+++ ...++++|||+||+|+.++++|++++++||+++|+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~ 76 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------SGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA 76 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------chhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence 468999999999999999999999999999876433221 12457899999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCChHHHHHHhcchhhHHHHHHHHHHH
Q 020283 82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV 161 (328)
Q Consensus 82 slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~ 161 (328)
++|+|+|++++++|++++++++|||++++|++|+++++.|+++++.++|++++++|++|+.+++++|.|++|+.+..++.
T Consensus 77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~ 156 (300)
T PF05653_consen 77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI 156 (300)
T ss_pred HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776655
Q ss_pred HHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 020283 162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241 (328)
Q Consensus 162 ~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~~ 241 (328)
+.+.+..+.+ .|+++ .+.|..+||++|++|++++|++++.++++++|+||+.+|.+|.++++++.++
T Consensus 157 ~~L~~~~~~r------~g~~~-------i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~ 223 (300)
T PF05653_consen 157 LILIFFIKPR------YGRRN-------ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA 223 (300)
T ss_pred HHHHHhhcch------hcccc-------eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence 4433322211 12222 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhh---------hhhhhccccCCCC
Q 020283 242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKF---------GATLSSRFNNFRS 307 (328)
Q Consensus 242 i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~f---------g~~l~~~~~~~~~ 307 (328)
+.|++||||||++||++.++|++|++||++++++|+++|||+++.++++++.| |+.+.+..+|.++
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 99999999999999999999999999999999999999999999999998854 6666666666543
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.1e-60 Score=441.30 Aligned_cols=288 Identities=23% Similarity=0.390 Sum_probs=260.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhch
Q 020283 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA 80 (328)
Q Consensus 1 m~~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap 80 (328)
+++|++|+.+|+.||++++.+.+++||+|+|.+..+.++.++ + .++++.|+||+|++.|++|+++||.||+|||
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~g--g----~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP 89 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEG--G----YGYLKEPLWWAGMLTMIVGEIANFAAYAFAP 89 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCC--C----cchhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence 468999999999999999999999999999988755554432 2 3467889999999999999999999999999
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCChHHHHHHhcchhhHHHHHHHHHH
Q 020283 81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI 160 (328)
Q Consensus 81 ~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i 160 (328)
+++|+|||++++++|+++|++++||+++..+.+||+++++|.+++|.++|++++..|++|+.+++++|+|++|+.+.+.+
T Consensus 90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~ 169 (335)
T KOG2922|consen 90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI 169 (335)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 020283 161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240 (328)
Q Consensus 161 ~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~ 240 (328)
.+++++.++.+ +|+.| .+.|..+|+++|++||++.|+++.+++.+++|++|+.+|.+|.++.+++.+
T Consensus 170 ~~il~~~~~p~------~g~tn-------ilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~ 236 (335)
T KOG2922|consen 170 VLILIFFYAPR------YGQTN-------ILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC 236 (335)
T ss_pred HHHHheeeccc------ccccc-------eeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 77655443322 23334 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhh---------hhhhhccccCCCC
Q 020283 241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKF---------GATLSSRFNNFRS 307 (328)
Q Consensus 241 ~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~f---------g~~l~~~~~~~~~ 307 (328)
+.+|++||||||+.||++++.|+||++||..++++|.|+|+||++.+..+...+ |+.++.++++-++
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI 312 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence 999999999999999999999999999999999999999999999999999854 5555555555443
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.08 E-value=4.1e-10 Score=95.02 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccc--hhHHHHHHHHHHHHHHHHHHhhchhHH
Q 020283 6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSL 83 (328)
Q Consensus 6 iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~W~~G~~l~~~g~~~~~~Al~~ap~sl 83 (328)
+|.++.+.+.++.+.||.+.|++..+.+..+... ...... ....+| .-+.|+.++++++.+|..++...|++.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~----~~~~~~-~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~ 76 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW----DFIAAL-LAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSR 76 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh----HHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3677888999999999999999988754221100 000011 134567 789999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHH--HhccccccchhhhhhhhhhcceeEEe
Q 020283 84 LAALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 84 v~Pl~~~~lv~~~~~a~~--~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
..|+-+...+...+.+.. ++||+++.++++|+.++++|+.++..
T Consensus 77 Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 77 AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999998888888875 79999999999999999999887654
No 4
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.83 E-value=2.9e-07 Score=86.65 Aligned_cols=250 Identities=10% Similarity=0.005 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCCCC----------CCCccccccccccchhH----HHHHHHHHHHHHH
Q 020283 8 AFINLVGSIAINFGTNLLKLGHIEREK-HSTLDSDG----------TNGKHSLKPIVHYHSWR----VGILVFLLGNCLN 72 (328)
Q Consensus 8 v~Lal~ssi~~a~G~~lqk~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~p~W~----~G~~l~~~g~~~~ 72 (328)
..+.+.++++.|..+.+.|+...++.. .....--. .......++ . ++.|| .+.........+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSR-L-PATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCC-c-chhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999965443211 00000000 000000111 1 12222 2333345666777
Q ss_pred HHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCChHHHHHHhcchhhHH
Q 020283 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLV 152 (328)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~~fl~ 152 (328)
..++...|.+..+|+...+-++..+++.+++|||+++++|.|..++..|+.++.. ++. +..+ +.-..
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~-~~~~----------~~g~~ 147 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRF-AQHR----------RKAYA 147 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccc-cccc----------hhHHH
Confidence 8899999999999999999999999999999999999999999999999886643 221 1111 10111
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhh-HHHHHHHHHHHHHHHhhcCc-cchhHHH
Q 020283 153 YCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSF-SVLFAKSLSNLLRLAMSNGY-QLHSWFT 230 (328)
Q Consensus 153 y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~-svl~aK~~~~~l~~~~~g~~-~~~~~~~ 230 (328)
+.....+..+......|+... +. ++.. ....+...+-++++. ..+.. ... ++.. +...+..
T Consensus 148 ~~l~aal~~a~~~i~~k~~~~-----~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~ 210 (281)
T TIGR03340 148 WALAAALGTAIYSLSDKAAAL-----GV-PAFY---SALGYLGIGFLAMGWPFLLLY-----LKR---HGRSMFPYARQI 210 (281)
T ss_pred HHHHHHHHHHHhhhhcccccc-----ch-hccc---ccHHHHHHHHHHHHHHHHHHH-----HHH---hccchhhhHHHH
Confidence 211111111111112222110 00 0000 011111111111111 11000 000 1111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 231 YSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 231 y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
+.++............+.++++++.|++.+.+..|. .++.+++.|.++++|. .+..+++
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~--~~~~~~i 269 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNER--WYLTRLM 269 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCC--ccHHHHH
Confidence 333333434444455677999999999999888776 5899999999999995 4555555
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.71 E-value=8.3e-08 Score=78.87 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHhhchhHHHhhh
Q 020283 10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL 87 (328)
Q Consensus 10 Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~--~l~~~g~~~~~~Al~~ap~slv~Pl 87 (328)
.-+++.++-..|+...|++.++.+. +... .++..+.+. ..+.++..++..++...|++...|+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~~----------~~~~-----~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~ 69 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVAI----------GKRR-----KHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc----------chhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence 3456667778899999998543210 1000 012345555 6688999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
.+++.+++.+.+.+++|||++.++++|..+++.|+.++.
T Consensus 70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987653
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.54 E-value=8.6e-06 Score=74.98 Aligned_cols=201 Identities=16% Similarity=0.072 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCC
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t 137 (328)
-..|.....+.+.+.+.|+...|.+...++.++.=+++.+++..++|||++++++.|..+.++|+.++...+ +.+.
T Consensus 50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~---~~~~- 125 (260)
T TIGR00950 50 LLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG---NLSI- 125 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC---cccc-
Confidence 356666677888888999999999999999999999999999999999999999999999999988765322 1111
Q ss_pred hHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 020283 138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRL 217 (328)
Q Consensus 138 ~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~ 217 (328)
+..-..+..+..+.........|+.... .++.. ...+. ..-.+++... .. ..
T Consensus 126 ---------~~~G~~~~l~a~~~~a~~~~~~k~~~~~------~~~~~----~~~~~-~~~~~~~~~l-~~-------~~ 177 (260)
T TIGR00950 126 ---------NPAGLLLGLGSGISFALGTVLYKRLVKK------EGPEL----LQFTG-WVLLLGALLL-LP-------FA 177 (260)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHhHHhhc------CCchH----HHHHH-HHHHHHHHHH-HH-------HH
Confidence 1001112222222222211122332100 00000 01111 0011111111 11 01
Q ss_pred HhhcCccchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhh
Q 020283 218 AMSNGYQLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLK 293 (328)
Q Consensus 218 ~~~g~~~~~~~~~y~-ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~ 293 (328)
...++....++..|. ++...+.+........++|+++.++..+..+.+ ..|+.+.+.+.++++| +.++.++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E--~~~~~~~~G 251 (260)
T TIGR00950 178 WFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGE--TLSLPQLIG 251 (260)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHHHHH
Confidence 112222212334442 333333333444455699999999888777755 7889999999999999 455555553
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.50 E-value=9.3e-06 Score=77.20 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHHHHHhh-chhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCChHHHHHHhcch
Q 020283 70 CLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNI 148 (328)
Q Consensus 70 ~~~~~Al~~-ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~ 148 (328)
.+.+.++.. .|.+..+-+.++.-++..+++++++|||+++++++|.++.++|+.++.. .+.++... + . .
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~-~~~~~~~~--~-~------~ 143 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE-DSLNGQHV--A-M------L 143 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc-ccCCCcch--h-H------H
Confidence 344566666 4777777777777788999999999999999999999999999887653 11111111 0 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCc-----
Q 020283 149 TFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY----- 223 (328)
Q Consensus 149 ~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~~~g~~----- 223 (328)
+ ..+.....+..+......|+..+ +++... .+.+......+++.-... .+ ... ++++
T Consensus 144 G-~~l~l~aal~~a~~~v~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~ 205 (299)
T PRK11453 144 G-FMLTLAAAFSWACGNIFNKKIMS-------HSTRPA---VMSLVVWSALIPIIPFFV---AS-LIL---DGSATMIHS 205 (299)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhc-------ccCccc---hhHHHHHHHHHHHHHHHH---HH-HHh---cCchhhhhh
Confidence 1 11111111111121112232110 000010 111112222222111100 00 010 1111
Q ss_pred -cchhHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 224 -QLHSWFTY-SMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 224 -~~~~~~~y-~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
...++..| .++...+.++..+....++++++.++..+.++ ....|+.+++.|.++++|. .+..+++
T Consensus 206 ~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~--~~~~~~i 273 (299)
T PRK11453 206 LVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDER--LTGLQFL 273 (299)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 11123333 34444566667777888999999998877775 5688999999999999994 5566666
No 8
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.43 E-value=2.1e-07 Score=76.61 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=82.0
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhchhHHHhhhh-hhhHHHHHH
Q 020283 19 NFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIA 97 (328)
Q Consensus 19 a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~-~~~lv~~~~ 97 (328)
+..+-+.||+....++...+. +.....+..++||+.++++.+...|++..+..++-+|+|+..|+. +++++++++
T Consensus 9 G~Tnpfik~g~~~~~~~~~~~----~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 9 GCTNPFIKRGSSGLEKVKASL----QLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred cCchHHHHHHHhhcCCccchH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 455667788876543221000 012234457899999999999999999999999999999999995 999999999
Q ss_pred HHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 98 FSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 98 ~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
.++++.+|..+++.++|+.+++.|+.+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 99777777778889999999999988753
No 9
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.34 E-value=7.5e-05 Score=71.04 Aligned_cols=205 Identities=15% Similarity=0.064 Sum_probs=121.4
Q ss_pred chhHHHHHH---HHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccch----hhhhhhhhhcceeEEe
Q 020283 56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVS 127 (328)
Q Consensus 56 p~W~~G~~l---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~----~~g~~li~~G~~~iv~ 127 (328)
..|..|+.. ...|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ +.|.++++.|+.++..
T Consensus 57 ~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~ 136 (290)
T TIGR00776 57 SIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR 136 (290)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence 345657777 8899999999999999999999999 8999999999999999999999 9999999999887755
Q ss_pred ecCCCCCCCChHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHH
Q 020283 128 FGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLF 207 (328)
Q Consensus 128 ~g~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~ 207 (328)
..++ ..+.++.. ..+.=+.+..+..+.-+......|+-+ .+ |. ...+....|++.+-.+++
T Consensus 137 ~~~~---~~~~~~~~---~~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~----~~-----~~~~~~~~g~~~~~~~~~ 197 (290)
T TIGR00776 137 SKDK---SAGIKSEF---NFKKGILLLLMSTIGYLVYVVVAKAFG----VD----GL-----SVLLPQAIGMVIGGIIFN 197 (290)
T ss_pred cccc---cccccccc---chhhHHHHHHHHHHHHHHHHHHHHHcC----CC----cc-----eehhHHHHHHHHHHHHHH
Confidence 4222 11111100 011112222222111111111233321 00 11 112223334443333333
Q ss_pred HHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccC
Q 020283 208 AKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLC 287 (328)
Q Consensus 208 aK~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~ 287 (328)
..- + .. ..+.....+..++..+.. ..+..+...+++++......++.-...++++++.|..+++|..+
T Consensus 198 ~~~-----~---~~-~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~-- 265 (290)
T TIGR00776 198 LGH-----I---LA-KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT-- 265 (290)
T ss_pred HHH-----h---cc-cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 322 0 11 112222333333343443 56666667788855555666666777799999999999999654
Q ss_pred ccch
Q 020283 288 LSPF 291 (328)
Q Consensus 288 ~~~~ 291 (328)
+.++
T Consensus 266 ~~~~ 269 (290)
T TIGR00776 266 KREM 269 (290)
T ss_pred ccee
Confidence 4444
No 10
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.33 E-value=3.4e-06 Score=70.58 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccc-------------------CCCCCCCCCccccccccccchhH---HHHHHHH
Q 020283 9 FINLVGSIAINFGTNLLKLGHIEREKHS-------------------TLDSDGTNGKHSLKPIVHYHSWR---VGILVFL 66 (328)
Q Consensus 9 ~Lal~ssi~~a~G~~lqk~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~p~W~---~G~~l~~ 66 (328)
+.|+.++++.+++.++-|-+.+..+..- ....+.. +. ...+.|. .+-+.-.
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~------~~~k~~lflilSGla~g 78 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAG-GE------IGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecc-cc------cCcceehhhhHHHHHHH
Confidence 5788899999999999998865332110 0000000 00 0111221 2224456
Q ss_pred HHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 67 ~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
++..+-|.|+.-+++|.|+|+-.++.++..+++..++|||++..+|+|+.++++|++++.
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 777788999999999999999999999999999999999999999999999999988764
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.28 E-value=3.3e-05 Score=73.39 Aligned_cols=122 Identities=10% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----------------CCCCCCCCccccccccccchh----HH
Q 020283 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHST----------------LDSDGTNGKHSLKPIVHYHSW----RV 60 (328)
Q Consensus 1 m~~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~p~W----~~ 60 (328)
|+....|..+.++++++.+.....-|... +.+..+. ..++ +....++..+++++ ..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICR---QWSYLKTLIQTPQKIFMLAV 78 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHcCHHHHHHHHH
Confidence 56677899999999998888888887542 1110000 0000 00000000112222 25
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 61 G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
|.....+...+.+.++...|.+...-+..+.=++..+++.+++|||+++++|.|.++...|+.++.
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 556677888999999999999999999999999999999999999999999999999999988654
No 12
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.22 E-value=4.5e-06 Score=68.25 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 61 G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
|......++.+.+.|+.+.| ..+.|+.+++.+++.+++..++|||++++++.|+.++.+|+.++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44455588999999999999 5999999999999999999999999999999999999999887655
No 13
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.19 E-value=0.00023 Score=67.87 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCC
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT 137 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t 137 (328)
|+.=-.++.++..++-.|+.+.|...-.-+-+...+++++++.+++|||.+++++.+++++++|+.+......++++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 33334566688899999999999999999999999999999999999999999999999999999988775443333222
Q ss_pred hHHHHHHhcchhhHHHHHHH--HHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHH-HHHHHH
Q 020283 138 PEQLAEKYSNITFLVYCLIL--IFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA-KSLSNL 214 (328)
Q Consensus 138 ~~el~~~~~~~~fl~y~~~~--~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~a-K~~~~~ 214 (328)
.++. ++.. -+..+. .+.-+.. .. ..|+...+++.+ .++ .+.|.-.-|+......... + -.+
T Consensus 147 ~~~~-----~~~~-G~~ll~~sl~~~a~~-~~--~qe~~~~~~~~~--~~~---~mfy~n~~~~~~~~~~~~~l~-~~~- 210 (303)
T PF08449_consen 147 SSSF-----SSAL-GIILLLLSLLLDAFT-GV--YQEKLFKKYGKS--PWE---LMFYTNLFSLPFLLILLFLLP-TGE- 210 (303)
T ss_pred cccc-----cchh-HHHHHHHHHHHHHHH-HH--HHHHHHHHhCCc--HHH---HHHHHHHHHHHHHHHHHHHHH-hhH-
Confidence 2211 1111 111111 1111110 00 011111111111 122 3344333333322111111 1 011
Q ss_pred HHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhh
Q 020283 215 LRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKF 294 (328)
Q Consensus 215 l~~~~~g~~~~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~f 294 (328)
..+.+ +....||..+..++....+...-+.+.+.-.+++++....-+ ...-...+++.+.++|++ ++++.+|...
T Consensus 211 ~~~~~--~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v-~t~Rk~~sillS~~~f~~--~~~~~~~~G~ 285 (303)
T PF08449_consen 211 FRSAI--RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIV-TTLRKFLSILLSVIIFGH--PLSPLQWIGI 285 (303)
T ss_pred hhHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHHHHhcCC--cCChHHHHHH
Confidence 11100 012367777666555544544444556677788777655444 445567788999999986 7888888855
Q ss_pred hh
Q 020283 295 GA 296 (328)
Q Consensus 295 g~ 296 (328)
++
T Consensus 286 ~l 287 (303)
T PF08449_consen 286 VL 287 (303)
T ss_pred HH
Confidence 44
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.06 E-value=0.00035 Score=66.33 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhc----hhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 61 GILVFLLGNCLNFISFGYA----AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 61 G~~l~~~g~~~~~~Al~~a----p~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
|.+.+.....+.+.++.++ |.+...-+..+.=++..++++.++|||++++++.|+++...|+.++..
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 3333334444445555443 445555666777788999999999999999999999999999887654
No 15
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.04 E-value=0.0002 Score=67.98 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
...|+. +.+...++..++.+.+.+..+-+.+++-++.++++++++|||++++++.|..+.+.|+.+.
T Consensus 69 ~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 69 LPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 445555 5677888899999999999999999999999999999999999999999999999998753
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.03 E-value=0.00032 Score=66.39 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHH-hhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCCh
Q 020283 60 VGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP 138 (328)
Q Consensus 60 ~G~~l~~~g~~~~~~Al-~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~ 138 (328)
.|......+..+...+. ...|.....-+..+.=++..+++.+ +|||++++++.|..+..+|+.++.. + ++ .+.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~-~-~~-~~~-- 147 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS-G-GN-LSG-- 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc-C-cc-ccc--
Confidence 45554455566667777 7888888888888888888899875 7999999999999999999876532 1 11 111
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 020283 139 EQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLA 218 (328)
Q Consensus 139 ~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~ 218 (328)
+ .++. .+.....+..+......|+.. ++++. ....+.... ++... .. .. .
T Consensus 148 ~-------~~G~-l~~l~a~~~~a~~~~~~~~~~-------~~~~~----~~~~~~~~~---~~~~~-~~--~~-~---- 197 (292)
T PRK11272 148 N-------PWGA-ILILIASASWAFGSVWSSRLP-------LPVGM----MAGAAEMLA---AGVVL-LI--AS-L---- 197 (292)
T ss_pred c-------hHHH-HHHHHHHHHHHHHHHHHHhcC-------CCcch----HHHHHHHHH---HHHHH-HH--HH-H----
Confidence 1 0001 111111111111111223211 00000 011122111 11111 00 00 0
Q ss_pred hhcCc--cchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh---
Q 020283 219 MSNGY--QLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL--- 292 (328)
Q Consensus 219 ~~g~~--~~~~~~~y~-ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~--- 292 (328)
..+.+ ...++..|. ++...+.+........|+++++.+++.+... ....|+.+.+.|.++++|. .+..+++
T Consensus 198 ~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~--~t~~~iiG~~ 274 (292)
T PRK11272 198 LSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGET--LSPIEWLALG 274 (292)
T ss_pred HcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCC--CcHHHHHHHH
Confidence 11221 222344442 3333344445555677999999988766665 7788999999999999995 5666655
Q ss_pred --hhhhhhhc
Q 020283 293 --KFGATLSS 300 (328)
Q Consensus 293 --~fg~~l~~ 300 (328)
..|+.+.+
T Consensus 275 lIi~gv~~~~ 284 (292)
T PRK11272 275 VIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHH
Confidence 23555544
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.95 E-value=0.0011 Score=60.88 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHH-HHhccccccchhhhhhhhhhcceeEEee
Q 020283 60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 60 ~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~-~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
.|......+..+.+.++...|.+..+++.+.+-++..+++. +++|||++++++.|..+...|+.++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~ 144 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence 44455677778889999999999999999999999999997 6779999999999999999998876553
No 18
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.95 E-value=7.4e-05 Score=62.32 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhh-hhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeec
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAAL-GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g 129 (328)
|+..+.++.++..+...|+...|+++..|+ .+++.+...+.+.+++||+++..+++|..+++.|++++=..+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 677778889999999999999999999999 569999999999999999999999999999999988765444
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.90 E-value=0.0022 Score=60.83 Aligned_cols=249 Identities=16% Similarity=0.140 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC---CCCC----ccccccccccch----hHHHHHHHHHHHHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---GTNG----KHSLKPIVHYHS----WRVGILVFLLGNCLNF 73 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~p~----W~~G~~l~~~g~~~~~ 73 (328)
..|+.+.+++.++.+.+.++-|.+..+.+..+...-+ +.-. ....+.-.+++. ++.|.. +...+.+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5678899999999999999999776532211000000 0000 000000011222 355553 556677778
Q ss_pred HHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCCCCCCChHHHHHHhcchhhHHH
Q 020283 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY 153 (328)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~~fl~y 153 (328)
.++...|.+...-+..++=++..+++ +|+. .++.+..+...|+.+++..+.+ .... + . .+. ..
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~--~~~~~~~i~~~Gv~li~~~~~~-~~~~--~-~------~G~-ll 152 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRP--VDFVWVVLAVLGLWFLLPLGQD-VSHV--D-L------TGA-AL 152 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCCh--HHHHHHHHHHHHHheeeecCCC-cccC--C-h------HHH-HH
Confidence 88888888877655555555555554 3544 3456777788898776532211 1111 1 0 001 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCccchhHHHHH-
Q 020283 154 CLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS- 232 (328)
Q Consensus 154 ~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~~~g~~~~~~~~~y~- 232 (328)
.....+..+......|+..+ +.++ . ...+ ..++++. ++.. .. .. .+.....++..|.
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~------~~~~-~----~~~~---~~~~~~~-~l~~--~~-~~----~~~~~~~~~~~~~~ 210 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGA------EHGP-A----TVAI---GSLIAAL-IFVP--IG-AL----QAGEALWHWSILPL 210 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhc------cCCc-h----HHHH---HHHHHHH-HHHH--HH-HH----ccCcccCCHHHHHH
Confidence 11111111111112233210 0011 1 1111 1122221 1111 11 11 1211123344443
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhhhh
Q 020283 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKFGA 296 (328)
Q Consensus 233 ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~fg~ 296 (328)
++...+.++..+....|+++++-+++.+.+. ....|+++.+.|.++++| +.+..+++...+
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE--~~~~~~~iG~~l 271 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGE--TLTLIQWLALGA 271 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCC--CCcHHHHHHHHH
Confidence 2345566667777788999999998766655 667899999999999999 566777774433
No 20
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.80 E-value=0.00018 Score=59.06 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHhhh-hhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeec
Q 020283 59 RVGILVFLLGNCLNFISFGYAAQSLLAAL-GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (328)
Q Consensus 59 ~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g 129 (328)
+..+..+.++..+...|+..-|.++..|. .+++.+.+.+.+.+++||+++..+++|..+++.|++++-..+
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45666778888888899999999999999 669999999999999999999999999999999988774433
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.78 E-value=0.0011 Score=65.14 Aligned_cols=60 Identities=13% Similarity=0.302 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHH------hccccccchhhhhhhhhhcceeEEe
Q 020283 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~------l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
.+.+.+.++.+.|.+...-+..+.=++.+++++++ +|||+++++++|+++...|+.++..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999999 6999999999999999999886654
No 22
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.75 E-value=0.0017 Score=63.28 Aligned_cols=76 Identities=12% Similarity=0.243 Sum_probs=65.5
Q ss_pred cccchhHHHHH--HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 53 VHYHSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 53 ~~~p~W~~G~~--l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
.++|.|.-=++ +++.|+.+...||.+-+.+-++=|...+++++++++.+++|||.++.+++|+.+++.|+.+++..
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 45555544332 35788888899999999999999999999999999999999999999999999999998877664
No 23
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.74 E-value=0.0029 Score=61.84 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 57 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
....|+.-. .+..+...++...+.+..+=+-+++=+++++++++++|||.+++.+.+.+++++|+.+.+
T Consensus 117 llp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 117 FLPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 344444433 345556699999999999999999999999999999999999999999999999998765
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.73 E-value=0.00049 Score=64.11 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeec
Q 020283 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (328)
Q Consensus 61 G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g 129 (328)
=-++|.+.+.+.++++...|.+.-|=+...-++++++++.+++|+|+++++|.+..+.+.|++++-.-+
T Consensus 23 PA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 23 PALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 347899999999999999999999999999999999999999999999999999999999988766543
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.69 E-value=0.00015 Score=68.85 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC---CC------CCccccccccccc----hhHHHHHHHHHHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---GT------NGKHSLKPIVHYH----SWRVGILVFLLGNCL 71 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~p----~W~~G~~l~~~g~~~ 71 (328)
.+|.++++.++++.+.+..+.|+...+.+.... .-. +. ............. .++.|+...++++.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999998876543221000 000 00 0000000000011 246777778889999
Q ss_pred HHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCC
Q 020283 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (328)
Q Consensus 72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~ 132 (328)
+..++...|.+.++++..+.-+++.+++.+++||+++..+++|.++++.|+.......+++
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999988775544443
No 26
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.57 E-value=0.00051 Score=54.53 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHH-HHHHHHHHHHHHHHhhchhHHHhhhh-h
Q 020283 12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI-LVFLLGNCLNFISFGYAAQSLLAALG-S 89 (328)
Q Consensus 12 l~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~-~l~~~g~~~~~~Al~~ap~slv~Pl~-~ 89 (328)
+.+.++-..|+...|+++.. +++.|..+. .++.++..+...|+...|.++..|.- +
T Consensus 7 ~~a~~~ev~~~~~lK~s~g~----------------------~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g 64 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASHGF----------------------TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTG 64 (93)
T ss_dssp HHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------------cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34445556677777874321 122344444 46788889999999999999999975 5
Q ss_pred hhHHHHHHHHHHHhccccccchhhhhhhh
Q 020283 90 VQFVSNIAFSYFVFNKMVTVKVLVATAFI 118 (328)
Q Consensus 90 ~~lv~~~~~a~~~l~E~~~~~~~~g~~li 118 (328)
++.+...+.+.+++||+++..++.|..++
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999999999875
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.55 E-value=0.0053 Score=56.75 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 65 ~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
+..+..+.+.|+...|.+...-+..++=++.++++++++|||+++++|.|..+..+|+.++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999988888888889999999999999999999999999999987654
No 28
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.48 E-value=0.003 Score=59.69 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=64.0
Q ss_pred hhHHHHHH---HHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhh----hhhhhhhcceeEEee
Q 020283 57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNIFLVSF 128 (328)
Q Consensus 57 ~W~~G~~l---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~----g~~li~~G~~~iv~~ 128 (328)
.|+.+++. -.+|++.++.++...-.|.-.|+.. .+++.|.+.+.+++||.-+..+++ +.+++++|+.+-..-
T Consensus 44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~ 123 (269)
T PF06800_consen 44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ 123 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 47777754 4699999999999999999999995 899999999999999998888776 567789998876665
Q ss_pred cCCCC
Q 020283 129 GNHQS 133 (328)
Q Consensus 129 g~~~~ 133 (328)
.++++
T Consensus 124 ~~~~~ 128 (269)
T PF06800_consen 124 DKKSD 128 (269)
T ss_pred ccccc
Confidence 44443
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.43 E-value=0.00093 Score=61.39 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC---C--C------CCCccccccccccchh----HHHHHHHHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---D--G------TNGKHSLKPIVHYHSW----RVGILVFLLG 68 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~---~--~------~~~~~~~~~~~~~p~W----~~G~~l~~~g 68 (328)
...|..+++.++++.+....++|+...+.+.....-. . + ........+....+.| +.|......+
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999997643221000000 0 0 0000000000111223 2444556788
Q ss_pred HHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcc
Q 020283 69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN 122 (328)
Q Consensus 69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~ 122 (328)
+.+++.++...|.+.+..+..+.-+++.+++.+++||+++..++.|+.+++.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999885
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.35 E-value=0.00017 Score=58.06 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
...|.+...+++.+...++...|.+.++++..+.-+++.+++..++||+++.+++.|+.+++.|+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566656789999999999999999999999999999999999999999999999999999998754
No 31
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.28 E-value=0.00093 Score=62.72 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe----ecCCCCCCCChHHHH
Q 020283 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS----FGNHQSPVYTPEQLA 142 (328)
Q Consensus 67 ~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~----~g~~~~~~~t~~el~ 142 (328)
.|..+...||...|++=..-..-.+=+++.++|..+||||.|+.|.+|+.....|+++++. ||.+++++.+..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~--- 185 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ--- 185 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---
Confidence 5556667788777776555455556688999999999999999999999999999999874 777666554432
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 020283 143 EKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNG 222 (328)
Q Consensus 143 ~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~l~~~~~g~ 222 (328)
.-+..|...+-+.-++....+. .+.|.-++ +-+. .+.+.|=..-+++ .+.+.-.+ -|.
T Consensus 186 ~~~~~~gt~aai~s~lf~asvy-IilR~iGk--------~~h~--~msvsyf~~i~lV----------~s~I~~~~-ig~ 243 (346)
T KOG4510|consen 186 VEYDIPGTVAAISSVLFGASVY-IILRYIGK--------NAHA--IMSVSYFSLITLV----------VSLIGCAS-IGA 243 (346)
T ss_pred ccccCCchHHHHHhHhhhhhHH-HHHHHhhc--------cccE--EEEehHHHHHHHH----------HHHHHHhh-ccc
Confidence 2234555433333222222222 23333211 0111 1112111111111 11111111 233
Q ss_pred ccc-hhHHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhhhhhhhc
Q 020283 223 YQL-HSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKFGATLSS 300 (328)
Q Consensus 223 ~~~-~~~~~y~-ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~fg~~l~~ 300 (328)
-|+ +.+.=|. ++.+.+.+.+.| .++.+|+|+-.+-- +.++.....+.+++=-+++|+|+.+ .|.|...-|..+|
T Consensus 244 ~~lP~cgkdr~l~~~lGvfgfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~~Ga~~vvsS 319 (346)
T KOG4510|consen 244 VQLPHCGKDRWLFVNLGVFGFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSWVGAVMVVSS 319 (346)
T ss_pred eecCccccceEEEEEehhhhhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHhhceeeeehh
Confidence 332 2223333 333444455555 57999999865543 3456777788889999999999853 5666655454444
No 32
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.21 E-value=0.0013 Score=64.53 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-------------------CCCCCCCCCccccccccc-cchhHHHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHS-------------------TLDSDGTNGKHSLKPIVH-YHSWRVGIL 63 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~p~W~~G~~ 63 (328)
+.+|..+++.++++.+++.++||+-..+..... ..++. . ...... -..+...++
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~~~~~~~i~ 260 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKN---N---PSVWIIHFDITLITIV 260 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccC---C---cccceeccchHHHHHH
Confidence 577999999999999999999998654421100 00000 0 000000 001111121
Q ss_pred ----HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 64 ----VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 64 ----l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
...+++.+|..+....+.+.++...-+.=+++++++..++||+++..+++|+++++.|+.+...
T Consensus 261 y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 261 TMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1234777888899999999999999999999999999999999999999999999999887643
No 33
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.21 E-value=0.0039 Score=51.14 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=56.8
Q ss_pred hhHHHH-HHHHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 57 SWRVGI-LVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 57 ~W~~G~-~l~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
.|...+ ..+.++..+--.|+..-|.++..+.=+ ++.+...+.+.+++||+++..++.|..+++.|++.+
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344433 335667777778888999999999866 889999999999999999999999999999998754
No 34
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.03 E-value=0.0055 Score=49.90 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 60 VGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 60 ~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
.-+.++.++..+-..|+..-|.++..+.=+ ++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 334556777777788999999999998766 899999999999999999999999999999998765
No 35
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.99 E-value=0.0037 Score=59.20 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-----------------CCCCCCCCCccccccccccchh----HHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHS-----------------TLDSDGTNGKHSLKPIVHYHSW----RVGIL 63 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~p~W----~~G~~ 63 (328)
..|..+++.++++.|.+...+|+...+.+... ..++ .. ...+ ....| +.|+.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--~~~~~~~i~~l~i~ 221 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE----RL-TALP--TLSGFLALGYLAVF 221 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC----cc-cccC--CHHHHHHHHHHHHH
Confidence 46999999999999999999998643211000 0000 00 0000 00123 23445
Q ss_pred HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 64 l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
..++++.++..++...|.+.+..+..+.-+++++++.+++||+++..+++|+.+++.|+.+..
T Consensus 222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999999999999999999999999999999999999987653
No 36
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0068 Score=49.41 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=57.9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 57 SWRVGI-LVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 57 ~W~~G~-~l~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
.|.+.+ +.+.+++.+-..|+..-|+++..++=+ ++.+...+.+..++||+++..+++|..+++.|++.+
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 344444 446777777788999999999988754 899999999999999999999999999999998754
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.94 E-value=0.0039 Score=59.14 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc--------------CCCCCCCCCccccccccccc-hh----HHHHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHS--------------TLDSDGTNGKHSLKPIVHYH-SW----RVGILVF 65 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~p-~W----~~G~~l~ 65 (328)
..|..+++.++++.+.+.++.||-..+..... ..++. . ..+ -++ .| +.| ...
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~---~~~--~~~~~~~~l~~~~-~~t 225 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ---P---AMV--FSLPAIIKLLLAA-AAM 225 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC---c---ccc--CCHHHHHHHHHHH-HHH
Confidence 46999999999999999999998653321100 00000 0 000 011 12 222 234
Q ss_pred HHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
++++.++..++...|.+.+.++..+.-+++.+++..++||+++..+++|.++++.|+.+..
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999987653
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.73 E-value=0.0013 Score=61.83 Aligned_cols=119 Identities=12% Similarity=0.036 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC-C----CC--Ccc------ccccc-cccch----hHHHHHHHHH
Q 020283 6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G----TN--GKH------SLKPI-VHYHS----WRVGILVFLL 67 (328)
Q Consensus 6 iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~-~----~~--~~~------~~~~~-~~~p~----W~~G~~l~~~ 67 (328)
-|..+++.++++.+.+..+.|+.+.+.......... . .. ... ..++. ..... .+.+.....+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 366778889999999988888764322110000000 0 00 000 00000 00111 2334445567
Q ss_pred HHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
++.+++.++...|.+.+.++.-++-+++.+++.+++||+++..+++|..+++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888999999999999999999999999999999999999999999999999999764
No 39
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.67 E-value=0.0095 Score=56.57 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC-C---------------CCCcccc-ccc-cccch-h----HHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G---------------TNGKHSL-KPI-VHYHS-W----RVG 61 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~-~---------------~~~~~~~-~~~-~~~p~-W----~~G 61 (328)
..|+.+++.++++.+.+..++|+...+.+......-. . .++.... .+. -.++. | +.|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4699999999999999999999854321110000000 0 0000000 000 00112 2 234
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 62 ~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
+...++++.+++.++...+...+.++..+.=+++.+++.+++||+++..+++|.++++.|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 4555677778888888888889999999998999999999999999999999999999998754
No 40
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.87 E-value=0.016 Score=53.19 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC-C----C-------CCCCccccccccc--cchhHHHHHHHHHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-S----D-------GTNGKHSLKPIVH--YHSWRVGILVFLLGNC 70 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~-~----~-------~~~~~~~~~~~~~--~p~W~~G~~l~~~g~~ 70 (328)
..|+.+++.++++.+...+.+|+-. +.......- - . ...... .....+ ...-+.|+....++..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998654 110000000 0 0 000000 000000 0112334444456788
Q ss_pred HHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 71 LNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 71 ~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
+++.++...+.+.++++..+..+++.+++..+++|+++.++++|+++++.|+.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999775543
No 41
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.84 E-value=0.15 Score=49.93 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hcc-----------------cCCCCCCCCCccccccccccchhHHHHH-
Q 020283 3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EKH-----------------STLDSDGTNGKHSLKPIVHYHSWRVGIL- 63 (328)
Q Consensus 3 ~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~p~W~~G~~- 63 (328)
+..+|++..+++.++.+.=.+-|||...=+ |.- ....+. -....+ -.....|..+++
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~---f~~~~~-~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIAALLLPD---FWAYYS-SFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHH-hcCHHHHHHHHHH
Confidence 457799999999999988888888732111 000 000000 000000 011234555553
Q ss_pred --HHHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhcccc---c----cchhhhhhhhhhcceeEEeecCCCC
Q 020283 64 --VFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---T----VKVLVATAFIVLGNIFLVSFGNHQS 133 (328)
Q Consensus 64 --l~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~---~----~~~~~g~~li~~G~~~iv~~g~~~~ 133 (328)
+-.+|++.++.+....-+|+-.|++. ++++.+.++...++||-- + ..-.+|++++++|+.+....+...|
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45789999999999999999999987 899999999999998743 2 2345588999999888777554444
Q ss_pred C
Q 020283 134 P 134 (328)
Q Consensus 134 ~ 134 (328)
+
T Consensus 160 ~ 160 (345)
T PRK13499 160 R 160 (345)
T ss_pred c
Confidence 3
No 42
>COG2510 Predicted membrane protein [Function unknown]
Probab=95.78 E-value=0.015 Score=48.99 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=59.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHH--------HHH-----------HHhhcCccch---hHHHHHHHHH-HHHHHHHHHHH
Q 020283 191 FSYAIVSGAVGSFSVLFAKSLSN--------LLR-----------LAMSNGYQLH---SWFTYSMLLL-FFSTAGFWMAR 247 (328)
Q Consensus 191 l~y~~~sgilg~~svl~aK~~~~--------~l~-----------~~~~g~~~~~---~~~~y~ll~~-~~~~~i~Ql~~ 247 (328)
..|+..|+...+.+.+++|-.-+ .++ ....|+.|-. .+..|..++. .+.+.+-|+.|
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 55666666666777767665543 111 1123443433 4444444333 34444444333
Q ss_pred HHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 248 LNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 248 LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
=+||+.++++.|+|+ --..+..+++.+..+++|..+ ..+|+
T Consensus 85 -f~ALk~G~as~VvPl-dk~svvl~~lls~lfL~E~ls--~~~~i 125 (140)
T COG2510 85 -FRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLS--LPTWI 125 (140)
T ss_pred -HHHHhcCCcceEEEc-ccccHHHHHHHHHHHhcCCCC--HHHHH
Confidence 479999999999998 455677789999999999554 44444
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.53 E-value=0.025 Score=53.68 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
.+++.+++.++...|.+.++++.-+.-+++.+++.+++||+++..+++|..+++.|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999888776654
No 44
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.27 Score=48.00 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
|-+=-++|.+-+-+.+++++-.|.+.-+....+-++.+.+++..+|+||+++++|...++...|+.++=
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 444456898888899999999999999999999999999999999999999999999999999998765
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.75 E-value=1.5 Score=41.93 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=111.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhchhH---HHhhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS---LLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 49 ~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~s---lv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
.+...|+|+-+....+..+-...|..-+-.+|-. +=+.+|= +.=++|+++++.++|||+++.+|+.+.+..+|+..
T Consensus 62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~ 141 (293)
T COG2962 62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI 141 (293)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3346778888888877777777777777777755 3344444 23356899999999999999999999999999875
Q ss_pred EEeecCCCCCCCChHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhH
Q 020283 125 LVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFS 204 (328)
Q Consensus 125 iv~~g~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~s 204 (328)
..... + +.+++. +.+...--.+...|+.-. .....|+.-=.-
T Consensus 142 ~~~~~----g------------~lpwva---l~la~sf~~Ygl~RK~~~-------------------v~a~~g~~lE~l 183 (293)
T COG2962 142 QTWLL----G------------SLPWVA---LALALSFGLYGLLRKKLK-------------------VDALTGLTLETL 183 (293)
T ss_pred HHHHc----C------------CCcHHH---HHHHHHHHHHHHHHHhcC-------------------CchHHhHHHHHH
Confidence 43321 1 112221 111111112223333210 011112111111
Q ss_pred HHHHHHHHHHHHHHhhcCc---cchhHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhc
Q 020283 205 VLFAKSLSNLLRLAMSNGY---QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYF 280 (328)
Q Consensus 205 vl~aK~~~~~l~~~~~g~~---~~~~~~~y~ll~~-~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f 280 (328)
.++-=++.-++-. ++.. +..++..+.++++ .++|++- +.....|-++-+.+.+ =+.|=..|+.-.+.+..+|
T Consensus 184 ~l~p~al~yl~~l--~~~~~~~~~~~~~~~~LLv~aG~vTavp-L~lf~~aa~~lpls~~-G~lqYi~Ptl~fllav~i~ 259 (293)
T COG2962 184 LLLPVALIYLLFL--ADSGQFLQQNANSLWLLLVLAGLVTAVP-LLLFAAAAKRLPLSTL-GFLQYIEPTLMFLLAVLIF 259 (293)
T ss_pred HHhHHHHHHHHHH--hcCchhhhcCCchHHHHHHHhhHHHHHH-HHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 1122222222221 2222 2245566655555 4555544 4445566666665443 3445556778899999999
Q ss_pred ccccccCccchhhh
Q 020283 281 QEYQVLCLSPFLKF 294 (328)
Q Consensus 281 ~E~~~~~~~~~~~f 294 (328)
+| +++..+...|
T Consensus 260 ~E--~~~~~~~~~F 271 (293)
T COG2962 260 GE--PFDSDQLVTF 271 (293)
T ss_pred CC--CCCHHHHHHH
Confidence 99 5666666654
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.61 E-value=0.053 Score=51.56 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC---CCC----CC----ccc--cccccccchhH----HHHHHHHH
Q 020283 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---DGT----NG----KHS--LKPIVHYHSWR----VGILVFLL 67 (328)
Q Consensus 5 ~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~---~~~----~~----~~~--~~~~~~~p~W~----~G~~l~~~ 67 (328)
..|+..++++++..+.-...-|+.+.+. .+. +.. .+ ..+ .+|. ..+.+| .|+. ..+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFGVDG-----LSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCc-----ceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHH
Confidence 4588888888888888777777543111 000 000 00 000 0111 122333 4444 467
Q ss_pred HHHHHHHHHh-hchhHHHhhhhhhhHHHHHHHHHHHhccccccchh----hhhhhhhhcceeEE
Q 020283 68 GNCLNFISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLV 126 (328)
Q Consensus 68 g~~~~~~Al~-~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~~iv 126 (328)
++.+.+.+.. ..+.+...++.....+.+.+.+.+++||+.+++++ +|.++++.|+.++.
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 7777788888 89999999999999999999999999999999999 99999999987654
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.54 E-value=0.31 Score=46.48 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
...=.++.+.|..+..+.|....+|--|-+-+.-++|.-+++..+||++++.++|+|...+.+|.+.+...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44456889999999999999999999999999999999999999999999999999999999998877664
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.46 E-value=0.34 Score=39.63 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 225 ~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
+++|...........+...-.+++..++++-|.+..+|+.+ .-++.+.+.|..+|+| +.+..+++
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E--~ls~~~~~ 95 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHE--PVSPRHWC 95 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHHHH
Confidence 44554433334444444556777899999999999999999 7777889999999999 56666666
No 49
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.46 E-value=0.17 Score=39.94 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhh
Q 020283 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKF 294 (328)
Q Consensus 240 ~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~f 294 (328)
+-..-.+++.+|+|+-|.++.+|+....=++...+.|..+|+| +.+..+++..
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E--~~s~~~~~gi 90 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE--SLSLSKWLGI 90 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHhhe
Confidence 4455568899999999999999999988899999999999999 4555555433
No 50
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.03 E-value=0.23 Score=41.75 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh----hccc---------------------CCCCCCCCC--ccccccccc-cchh
Q 020283 7 GAFINLVGSIAINFGTNLLKLGHIER----EKHS---------------------TLDSDGTNG--KHSLKPIVH-YHSW 58 (328)
Q Consensus 7 Gv~Lal~ssi~~a~G~~lqk~~~~~~----~~~~---------------------~~~~~~~~~--~~~~~~~~~-~p~W 58 (328)
|.++++.|+++.++=.+++|+...+. ++.+ ..|+..... ....+.-.+ .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999999887764 1110 001000000 000000000 1122
Q ss_pred HHHHHH-HH---HHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 59 RVGILV-FL---LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 59 ~~G~~l-~~---~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
+.-+.. -+ +-+...+..+...+...-.=++.+--+...+++..+++|++|..++.|.++.+.|+.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 222211 22 3444556677777777777888888899999999999999999999999999999753
No 51
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=93.99 E-value=0.29 Score=47.84 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCC---------CccccccccccchhHHHHHHHHHH-HHHH
Q 020283 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTN---------GKHSLKPIVHYHSWRVGILVFLLG-NCLN 72 (328)
Q Consensus 3 ~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~W~~G~~l~~~g-~~~~ 72 (328)
+..+|-++++.|+++.|+..++|++-.++.++.+.-..-|.- ..-... -+++-.|=.......+| .++.
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~-~i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERS-GIESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehh-hhhccCCChhhHHHHHHHHHHH
Confidence 457899999999999999999999876654322100000000 000000 01111122222333333 3455
Q ss_pred HHHHhhchhHHH------hhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 73 FISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 73 ~~Al~~ap~slv------~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
+.-|...|..+- .-++- ++-++++++..++.|++++..-++|-+++++|.++.....++
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 677777777542 22222 357889999999999999999999999999998766554433
No 52
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.31 E-value=0.29 Score=48.27 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=53.3
Q ss_pred HHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCC
Q 020283 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (328)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~ 132 (328)
=.||++-.++-..=+.+.+=+|.+.++..+.+||+|..+.++..+.+.|++++...+.++
T Consensus 177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 368999999999999999999999999999999999999999999999998777655444
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=92.18 E-value=1.2 Score=37.43 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhh-hhcccccccCccchh-----hhhhhhhccc
Q 020283 237 FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGF-VYFQEYQVLCLSPFL-----KFGATLSSRF 302 (328)
Q Consensus 237 ~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~-i~f~E~~~~~~~~~~-----~fg~~l~~~~ 302 (328)
.+.+......+.+.++++.|.+..+|+....+....+.+-. ++|+| +.+..+++ ..|+.+.++.
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E--~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE--TFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHhccC
Confidence 33444455566699999999999999998887555554444 48999 56666666 3488777653
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=90.04 E-value=0.25 Score=46.74 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeE
Q 020283 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (328)
Q Consensus 70 ~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~i 125 (328)
..++.++...+.+...-.+.+.=++.++++.+++||+++..+++|.++++.|+.+.
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 44456777888888888888888889999999999999999999999999998654
No 55
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=89.96 E-value=11 Score=35.61 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=47.3
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhhhhhhhc
Q 020283 224 QLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKFGATLSS 300 (328)
Q Consensus 224 ~~~~~~~y~-ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~fg~~l~~ 300 (328)
.+.+|..-. -+.+.+.+...--..=.-||++-++. ..-+..+.+|..+.+.|.++++| +.+..||....+.+..
T Consensus 202 ~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~-~F~~LlSLePa~aAl~G~i~L~e--~ls~~qwlaI~~ViaA 276 (292)
T COG5006 202 ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPAR-TFGTLLSLEPALAALSGLIFLGE--TLTLIQWLAIAAVIAA 276 (292)
T ss_pred hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChh-HHHHHHHhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Confidence 344555432 22333333333333335677777764 45677889999999999999999 6678888876554444
No 56
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=89.95 E-value=1.1 Score=36.64 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=50.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhh
Q 020283 224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLK 293 (328)
Q Consensus 224 ~~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~ 293 (328)
.+++|.+....++ +...-.+++.+|+|+-|..+.+|+-...=++...+.|.++|+| +.+..+++.
T Consensus 31 gf~~~~~~~~~~~---~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e--~~~~~~~~g 95 (109)
T PRK10650 31 GFRRKIYGILSLA---AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ--RLNRKGWIG 95 (109)
T ss_pred CCcchHHHHHHHH---HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 4677776544433 3344567899999999999999999999999999999999999 455555553
No 57
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.94 E-value=1.5 Score=39.61 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-------------------cCCCCCCCCCccccccccc-cchhHHHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKH-------------------STLDSDGTNGKHSLKPIVH-YHSWRVGIL 63 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~p~W~~G~~ 63 (328)
...|+...+.+..+.++..+.|++..++++.. ...++. +.......... .+.+|.=.+
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDG--TLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhccc--chhhccCcccCCchHHHHHHH
Confidence 35566667777777788889998875543210 000000 00000000011 122333334
Q ss_pred HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcce
Q 020283 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNI 123 (328)
Q Consensus 64 l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~ 123 (328)
+...+.++-...+..++-....=..++..+.+.+++.++++|+++...+.|+.++..|+.
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 445666666778888888889889999999999999999999999999999999998865
No 58
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=89.38 E-value=0.17 Score=41.22 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=61.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 50 KPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 50 ~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
+..+.+-..|+=+++---|+.+-+.-|+-+|.++-.|... +++.|+.+++..+-.|.-.++.+.|+.++++|+.+.+
T Consensus 47 ~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 47 KTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3455566778888888889999999999999999999865 7999999999665444446666779999999987654
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=89.20 E-value=1.5 Score=35.71 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=50.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 224 ~~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
.|+++.++...++ +...-.+++.+|+|.-|..+.+++-...=+....+.|.++|+| +.+..+++
T Consensus 25 gf~~~~~~~~~i~---~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e--~~~~~~~~ 88 (105)
T PRK11431 25 GFSRLTPSIITVT---AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE--SASPARLL 88 (105)
T ss_pred CCccHHHHHHHHH---HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHH
Confidence 4677777655533 3344567899999999999999999988899999999999999 45555555
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=88.00 E-value=0.76 Score=43.58 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhh----hhhhhhhcce
Q 020283 63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNI 123 (328)
Q Consensus 63 ~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~----g~~li~~G~~ 123 (328)
++...|+++.+++-...-+..-.|++.++++.+.+-+-+++||+=+++|+. |.++++.|.+
T Consensus 203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 556789999999988999999999999999999999999999999999875 6677777754
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=86.55 E-value=1.6 Score=41.13 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hcccCCCCCC--------C-CCcccccccccc-chhHHHHHHHH----H
Q 020283 3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EKHSTLDSDG--------T-NGKHSLKPIVHY-HSWRVGILVFL----L 67 (328)
Q Consensus 3 ~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~-~~~~~~~~~~--------~-~~~~~~~~~~~~-p~W~~G~~l~~----~ 67 (328)
....|+.+|+.+..+-+.=.+.=||..... ..... .-+ . -+...-.+.+.+ +.-..++..-+ +
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~--a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGV--AVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHH--HHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhccc
Confidence 457899999999888776666666554211 00000 000 0 000000111222 23344444433 4
Q ss_pred HHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
=+.+..+|+.-.|...-.-+.++-=.+..+.+..++||++|..||+|+.+++.++.....-
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 4677899999999999999999888889999999999999999999999999988765553
No 62
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=86.32 E-value=2.5 Score=34.58 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh-----hhhhhh
Q 020283 224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL-----KFGATL 298 (328)
Q Consensus 224 ~~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~-----~fg~~l 298 (328)
.++++.+....+ .+...-.+++.+++++-|....+|+-...=++...+.|.++|+|. .+..+++ +.|+.+
T Consensus 26 gf~~~~~~i~~~---~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~--~~~~~~~gi~lIi~GVi~ 100 (110)
T PRK09541 26 GFTRLWPSVGTI---ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR--LDLPAIIGMMLICAGVLV 100 (110)
T ss_pred CCCchhHHHHHH---HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHH
Confidence 366666654433 334455677899999999999999998888899999999999994 4555555 336655
Q ss_pred hc
Q 020283 299 SS 300 (328)
Q Consensus 299 ~~ 300 (328)
..
T Consensus 101 l~ 102 (110)
T PRK09541 101 IN 102 (110)
T ss_pred Hh
Confidence 53
No 63
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=86.20 E-value=4.5 Score=32.91 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=38.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
+-+.-|.+=++.+++-....-|.+.++.||.|...+.+|+.+ +.++|.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v-il~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV-ILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee-eEeCCC
Confidence 456667777788888888888999999999999999999664 455654
No 64
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=84.84 E-value=1.8 Score=41.28 Aligned_cols=77 Identities=14% Similarity=0.332 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhchh-HHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 55 YHSWRVGILVFLLGNCLNFISFGYAAQ-SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 55 ~p~W~~G~~l~~~g~~~~~~Al~~ap~-slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
.+.|..-..++-..++.|=.|+.|.=. -+=.-+-+-+++.|+.++..++|+|-+.+++..++.+++|+++.-.+..+
T Consensus 64 lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~ 141 (330)
T KOG1583|consen 64 LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSK 141 (330)
T ss_pred hhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCc
Confidence 356777777777788888888887521 11122345589999999999999999999999999999999877665544
No 65
>PRK02237 hypothetical protein; Provisional
Probab=83.84 E-value=4.2 Score=33.27 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=38.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
+-+.-|.+=++.+++-....-|++.++.|++|..++.+|+.++ .++|.
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 3445566667778888889999999999999999999998855 45553
No 66
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=83.69 E-value=1.5 Score=34.69 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 237 FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 237 ~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
...+...-..+.++|+++-+++.+.++.+ ..++.+.+.|.++++|. .+..+++
T Consensus 60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~--~~~~~~~ 112 (126)
T PF00892_consen 60 GLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGER--PSWRQII 112 (126)
T ss_pred hccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCC--CCHHHHH
Confidence 33333444556789999999999998877 79999999999999995 4555555
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=83.11 E-value=3.5 Score=33.65 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhhh
Q 020283 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKFG 295 (328)
Q Consensus 225 ~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~fg 295 (328)
|+++.++.+.++ +...-.++|.+|+|.-|..+.+++-.-.=+....+.|.++|+| +.+..+++..+
T Consensus 27 f~~~~~~il~~v---~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E--~l~~~~~~gl~ 92 (106)
T COG2076 27 FTRLWPSILTIV---GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGE--SLSLIKLLGLA 92 (106)
T ss_pred ccccchHHHHHH---HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHHHH
Confidence 555555543333 3344467889999999999999999999999999999999999 55566665443
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=82.18 E-value=4.9 Score=38.16 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC----------------C--CCCCccccccccccchhHHHHHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS----------------D--GTNGKHSLKPIVHYHSWRVGILVF 65 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~----------------~--~~~~~~~~~~~~~~p~W~~G~~l~ 65 (328)
+..|+++.+++-++.++-.+.|++-..+.++++.+.= . ..+..+..+-..+.|..+.-+.+.
T Consensus 152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 4569999999999999999999988765543210000 0 000001111122334444443333
Q ss_pred -HHHHHHHHHH---HhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 66 -LLGNCLNFIS---FGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 66 -~~g~~~~~~A---l~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
..+.+++..- ...-......-...+--+.+.+++..+.+++++...|.|..++..|..+
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3444444222 2222222333344455677888999999999999999999999998654
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=80.41 E-value=4.9 Score=33.49 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh-----hhhhhhhc
Q 020283 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL-----KFGATLSS 300 (328)
Q Consensus 240 ~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~-----~fg~~l~~ 300 (328)
+...-.+++.+++|.-|..+.+|+....=++...+.|.++|+| +.+..+++ +.|+.+..
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E--~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDE--SLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhh
Confidence 3445567889999999999999998888888899999999999 45555555 33665554
No 70
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=80.02 E-value=13 Score=29.87 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 243 ~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
.+......|++..+ ..+.| .....++.+.+.|.++|+| +.+..++.
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~-i~~~~pi~~~ll~~~~~~e--r~~~~~~~ 92 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAA-IFSLSPIFTALLSWLFFKE--RLSPRRWL 92 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHH-HHHHHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 33445578888888 45554 4556999999999999999 55555555
No 71
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.80 E-value=4.7 Score=32.92 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=38.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecC
Q 020283 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (328)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~ 130 (328)
+-+.=|.+=++.+++-....-|++.++.|++|..++.+|+.++ .++|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence 3445566667778888899999999999999999999998865 4454
No 72
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.57 E-value=10 Score=30.70 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=60.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCcccccccc--ccchhHHHHHHHHHHHHHH---HHH
Q 020283 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIV--HYHSWRVGILVFLLGNCLN---FIS 75 (328)
Q Consensus 1 m~~~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~W~~G~~l~~~g~~~~---~~A 75 (328)
|+.+.--++|-+.|++++.++ -++|.+... +|+. ---.|=+.+.=|.+..-.| -..
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~---------------~pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v 65 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTN---------------KPLVIVILASWGIAFFEYLLQVPANRIGHQV 65 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHH----HHHHHhccC---------------CchhHHHHHHhhHHHHHHHHhCccchhhhhh
Confidence 667777888888898888544 578886421 1100 0012333332233222222 122
Q ss_pred HhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 76 FGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 76 l~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
|+-+.+-..|- .+++..=+++|.++++|+++...+.|..++..|+..
T Consensus 66 ~s~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 66 YSAAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred ccHHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 33333333332 356777788999999999999888888887777653
No 73
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=77.51 E-value=4.5 Score=39.47 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=39.1
Q ss_pred HHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 75 SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 75 Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
.++..+..-..=.+.+-=++..+++..++||+++..+++|.++++.|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 44445555555555556677889999999999999999999999999764
No 74
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=73.18 E-value=35 Score=31.65 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------------------cCCCCCCCCCccccccccccchhHHHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKH--------------------STLDSDGTNGKHSLKPIVHYHSWRVGIL 63 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~p~W~~G~~ 63 (328)
..+|+.+.++++++.+++-+...|..++.+.. ...|.+.......+..+ ++.-|.=+.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~--~~~~~~~i~ 189 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGY--SWWVWIVIF 189 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhc--chHHHHHHH
Confidence 46899999999999999999888776654311 00111000001111111 122222223
Q ss_pred HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhh
Q 020283 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117 (328)
Q Consensus 64 l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~l 117 (328)
+..+|-++-...+.+++-.+=.=-.+++++.+.+++..+++.+++..-.+|+.+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 334555555556777776666666678899999999999999999888777765
No 75
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=70.35 E-value=35 Score=33.06 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCCC
Q 020283 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (328)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~~ 132 (328)
.++.-++..||.+.+.-...=-=+.-++-.+++..++-++|.+..|.+.+.++..|+.++..+.+.+
T Consensus 94 ~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 94 TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 5778888889988775544434445577788999999999999999999999999999998875554
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=69.89 E-value=13 Score=30.75 Aligned_cols=57 Identities=23% Similarity=0.062 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccc
Q 020283 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV 285 (328)
Q Consensus 225 ~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~ 285 (328)
+.+|....-.++-..+.+.- .-.|.+.|.+..+|+.+..--+++.+.|..+.+|..+
T Consensus 39 l~n~~y~ipf~lNq~GSv~f----~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~ 95 (113)
T PF10639_consen 39 LLNPKYIIPFLLNQSGSVLF----FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS 95 (113)
T ss_pred HHhHHHHHHHHHHHHHHHHH----HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc
Confidence 45566555555544444443 4567799999999999998888999999888777643
No 77
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=69.34 E-value=19 Score=35.89 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hcccCC---------------------CCCCCCCccccccccccchhHHH
Q 020283 4 WVIGAFINLVGSIAINFGTNLLKLGHIER-EKHSTL---------------------DSDGTNGKHSLKPIVHYHSWRVG 61 (328)
Q Consensus 4 ~~iGv~Lal~ssi~~a~G~~lqk~~~~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~p~W~~G 61 (328)
-.+|.++|+.||++.|+=.++.||-.-++ ++-+.+ |..+-+....+...--.-....|
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 37899999999999999999999866554 221100 00000011111111111234566
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 62 ~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
.+.-+++..+|..|...-+-.++.--.++++..+++.-..+-+.+.+...++|...+.+|-+++-.
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 667788888998887766655555555678887888777777889999999999999999665544
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=68.64 E-value=11 Score=31.88 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhh-hHHHHHHHHHH----Hhccccccchhhhhhhhhhcce
Q 020283 57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSV-QFVSNIAFSYF----VFNKMVTVKVLVATAFIVLGNI 123 (328)
Q Consensus 57 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~-~lv~~~~~a~~----~l~E~~~~~~~~g~~li~~G~~ 123 (328)
++|.|-.+-+.--.++.........+...-+... +++.++++-++ .-+++++.++.+|..+++.|+.
T Consensus 66 w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 66 WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3444544443444444444444444444333333 46667777776 4578999999999999999975
No 79
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=62.50 E-value=5.4 Score=38.76 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 58 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
...|.. +.+|-++.-.|+...|++..|-.-++.-++++++++++.+|+.+++.+.-...++.|+.+-..
T Consensus 87 lpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 87 LPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 344433 357888888999999999999999999999999999999999999999888888888775443
No 80
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=57.45 E-value=19 Score=32.93 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
.+-.-..||...+.+.+..+-+..--|..+++...+|+++...+++.+.+.+.|++++..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 345557788999999999999999999999999999999999999999999999887765
No 81
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.02 E-value=7.9 Score=31.58 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhccccccchhhhhhhhhhccee
Q 020283 90 VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (328)
Q Consensus 90 ~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~ 124 (328)
+++..=.+++.+++||+++.....|-++++.++..
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 34444567788999999999999998888777553
No 82
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=54.87 E-value=10 Score=36.05 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
-|+......-++-|-.-+.+..++++.++||.|-+..++.|++.|+.|+++++..
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 4666667777778888888889999999999999999999999999999987763
No 83
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=47.75 E-value=41 Score=32.33 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccccccchhhhhhhhhhcceeEEe
Q 020283 92 FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (328)
Q Consensus 92 lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~ 127 (328)
-..+++++-.+.+.++|...|+|+.++..|..+...
T Consensus 279 KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 279 KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356888888899999999999999999999876543
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=46.51 E-value=10 Score=35.74 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=66.8
Q ss_pred cchhHHHHHH---HHHHHHHHHHHHhhchhHHHhhhhh-hhHHHHHHHHHHHhccccccchhh-h---hhhhhhcceeEE
Q 020283 55 YHSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLV-A---TAFIVLGNIFLV 126 (328)
Q Consensus 55 ~p~W~~G~~l---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~-g---~~li~~G~~~iv 126 (328)
-..|..|++. -.+|+..||-|...--.|.-.|+.. .+++.+.+++.+.+||--+..+.+ | .++++.|+.+-.
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 3457777754 3589999999999999999999987 789999999999999998877665 4 467888877665
Q ss_pred eecCCCCCCCChHHHH
Q 020283 127 SFGNHQSPVYTPEQLA 142 (328)
Q Consensus 127 ~~g~~~~~~~t~~el~ 142 (328)
.-.+++.++.+++.+.
T Consensus 136 ~~~~~nk~~~~~~n~k 151 (288)
T COG4975 136 KQDRNNKEEENPSNLK 151 (288)
T ss_pred eeccccccccChHhhh
Confidence 5444444555555443
No 85
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.46 E-value=1.4e+02 Score=27.05 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=39.7
Q ss_pred ccchhHHHHHHHHHHHHHHH---HHHhhchhHHHhhh--hhhhHHHHHHHH-HHHhccccccch
Q 020283 54 HYHSWRVGILVFLLGNCLNF---ISFGYAAQSLLAAL--GSVQFVSNIAFS-YFVFNKMVTVKV 111 (328)
Q Consensus 54 ~~p~W~~G~~l~~~g~~~~~---~Al~~ap~slv~Pl--~~~~lv~~~~~a-~~~l~E~~~~~~ 111 (328)
+||.||=++....+...+|+ ++=+|.|.|+=.-| -++.++..++++ +|+++++.+.+.
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35789999999888888884 46677787753333 334455555554 688898887654
No 86
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=45.29 E-value=14 Score=34.65 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 92 FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 92 lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
-.|+.+.+..+.+.+++.++|+|++++..|...-+..|.+
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 5789999999999999999999999999998887777754
No 87
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=44.23 E-value=87 Score=29.58 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhchhHHHhhhhhhh----HHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 65 FLLGNCLNFISFGYAAQSLLAALGSVQ----FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 65 ~~~g~~~~~~Al~~ap~slv~Pl~~~~----lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
|.++.+..=-|+.+.| .|-+.++ =+-.++++..+.|++-.+++...+++|+.|+.++...
T Consensus 95 YLlAMVssN~Alq~vp----YPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 95 YLLAMVSSNQALQYVP----YPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HHHHHHhccchhcccC----CcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444555555 3444432 2335677888889999999999999999999988774
No 88
>PRK13499 rhamnose-proton symporter; Provisional
Probab=42.28 E-value=47 Score=32.68 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=27.3
Q ss_pred hh-hhhHHHHHHHHHHHhccccc--cc----hhhhhhhhhhcceeEEe
Q 020283 87 LG-SVQFVSNIAFSYFVFNKMVT--VK----VLVATAFIVLGNIFLVS 127 (328)
Q Consensus 87 l~-~~~lv~~~~~a~~~l~E~~~--~~----~~~g~~li~~G~~~iv~ 127 (328)
+. +.+++++.+=+- ++||+=+ ++ -+.|.++++.|..++..
T Consensus 295 l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 295 LHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred HhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 45 566666666555 4999977 33 45688889998876644
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=36.83 E-value=5.6 Score=37.45 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhh----hhhhhhhcceeEE
Q 020283 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNIFLV 126 (328)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~----g~~li~~G~~~iv 126 (328)
..|++..+.|=..+-...--.+..++.+.+.+=+-+++|||=|++|+. |+.+++.|.+++.
T Consensus 220 a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 220 AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 455555555444444444445566677777777889999999999876 6677777766554
No 90
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=36.05 E-value=1.3e+02 Score=23.16 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=13.3
Q ss_pred HHHhhhhhhccccccc
Q 020283 271 FSICTGFVYFQEYQVL 286 (328)
Q Consensus 271 ~ai~~G~i~f~E~~~~ 286 (328)
.+.++|.++++|.++-
T Consensus 54 ~~Fi~GfI~~RDRKrn 69 (77)
T PF11118_consen 54 VGFIAGFILHRDRKRN 69 (77)
T ss_pred HHHHHhHhheeecccc
Confidence 5788999999998763
No 91
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.86 E-value=5.7 Score=37.99 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhc
Q 020283 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLG 121 (328)
Q Consensus 64 l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G 121 (328)
.++++-..|-..|.+.|.+.-+-=-++..+||+++++.++|+|-+..-..+|.+|+.|
T Consensus 111 Vfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G 168 (347)
T KOG1442|consen 111 VFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG 168 (347)
T ss_pred eeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh
Confidence 3455556677778888888887777899999999999999999999888888888888
No 92
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.33 E-value=2.2e+02 Score=25.48 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---hhchhHH---HhhhhhhhHHHHHHHHHHHhccccccc
Q 020283 55 YHSWRVGILVFLLGNCLNFISF---GYAAQSL---LAALGSVQFVSNIAFSYFVFNKMVTVK 110 (328)
Q Consensus 55 ~p~W~~G~~l~~~g~~~~~~Al---~~ap~sl---v~Pl~~~~lv~~~~~a~~~l~E~~~~~ 110 (328)
|+.||-.++..++..+.|+..+ ++.|..+ +.|...+-+-..+...++++++|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3567777777766666665433 3344442 333333333335556678888887654
No 93
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=34.39 E-value=74 Score=30.52 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred cccchhHHHHHHHHHHHHHHHH----HHhhchhHHHhhhhhhhHH-HHHHHHHHHhccc--cccchh----hhhhhhhhc
Q 020283 53 VHYHSWRVGILVFLLGNCLNFI----SFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKM--VTVKVL----VATAFIVLG 121 (328)
Q Consensus 53 ~~~p~W~~G~~l~~~g~~~~~~----Al~~ap~slv~Pl~~~~lv-~~~~~a~~~l~E~--~~~~~~----~g~~li~~G 121 (328)
+++|.-|.=++.++...+.|.. ||..-+.++|.|+--..+. ++.+-+..+.+|. .+..++ .|+..++.|
T Consensus 207 f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~G 286 (300)
T PF05653_consen 207 FTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIG 286 (300)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 4456666556666666666643 7888899999999987754 4555566677764 333333 377788999
Q ss_pred ceeEEee
Q 020283 122 NIFLVSF 128 (328)
Q Consensus 122 ~~~iv~~ 128 (328)
+.++...
T Consensus 287 V~lL~~~ 293 (300)
T PF05653_consen 287 VFLLSSS 293 (300)
T ss_pred hheeecc
Confidence 8876553
No 94
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=31.35 E-value=1.1e+02 Score=29.58 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchhhh
Q 020283 225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFLKF 294 (328)
Q Consensus 225 ~~~~~~y~ll~~~~~~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~~f 294 (328)
.+.|..+.+..+.......|..-.=-|-.++... -...=|-.-|+++++.|.++|+| +.+..|++..
T Consensus 66 ~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~l-eaSLGY~InPL~~VllG~lflkE--rls~~Q~iAV 132 (293)
T COG2962 66 LKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVL-EASLGYFINPLVNVLLGRLFLKE--RLSRLQWIAV 132 (293)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhheecCCCchh-HHHhHHHHHHHHHHHHHHHHHHh--hccHHHHHHH
Confidence 3556666665555444444433333333343322 23344556788999999999999 7788888855
No 95
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=29.81 E-value=25 Score=33.67 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEE
Q 020283 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (328)
Q Consensus 67 ~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv 126 (328)
.|+++-..++....+-=++-+--..++++.+.-..+.||..|.+.|.|.++++...+...
T Consensus 265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 455555566666555555555567889999999999999999999999987666555443
No 96
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=28.42 E-value=4.8e+02 Score=27.69 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=35.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhhhh
Q 020283 55 YHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117 (328)
Q Consensus 55 ~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~l 117 (328)
|.....|.+++++|.+....|-......--+-+..++.-.+.. ......|-.+ .++.+...
T Consensus 108 r~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p-~k~R~~~~ 168 (599)
T PF06609_consen 108 RYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVP-NKWRGLGL 168 (599)
T ss_pred hHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcc-cchhhhHh
Confidence 3445667777899999888777776666555555554333333 3344566543 34444333
No 97
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=26.27 E-value=5.7e+02 Score=24.25 Aligned_cols=135 Identities=10% Similarity=0.165 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchh---HHHhhhhhh--hHHHHHHHHH---HHhccccccchhhhhhhhhhcceeEEeecCC
Q 020283 60 VGILVFLLGNCLNFISFGYAAQ---SLLAALGSV--QFVSNIAFSY---FVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (328)
Q Consensus 60 ~G~~l~~~g~~~~~~Al~~ap~---slv~Pl~~~--~lv~~~~~a~---~~l~E~~~~~~~~g~~li~~G~~~iv~~g~~ 131 (328)
+|+..+..|.+.....+..... .++.|..++ +.+...+.+. -..|-|+...+.-=+-+...|...+.-++.-
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666666543 567776653 3344444332 2233333333332233333443333333333
Q ss_pred CCCCCChHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHH
Q 020283 132 QSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSV 205 (328)
Q Consensus 132 ~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~sv 205 (328)
-.+.++.+++.+..-...++.-.++..... +.|=+ +.+.-.|+ ++ + |-+..+..||.+.-..+
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mA-IlHPF----NACLGPnE---~q-~--RTL~la~~~G~ls~ii~ 217 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMA-ILHPF----NACLGPNE---SQ-D--RTLTLAVECGFLSMIIF 217 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHH-hcCcc----ccccCCCc---ch-h--HHHHHHHHHHHHHHHHH
Confidence 346777787877766777765443332221 11100 01100011 11 2 25778888887766555
No 98
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=26.02 E-value=2.4e+02 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhchh-H--------HHhhhhhhhHHHHHHHHHHHhccccccchhhhhhh--hhhccee
Q 020283 65 FLLGNCLNFISFGYAAQ-S--------LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF--IVLGNIF 124 (328)
Q Consensus 65 ~~~g~~~~~~Al~~ap~-s--------lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~l--i~~G~~~ 124 (328)
+.-|...++.|+..-++ . +.-=+.=.+...+++++..-++||++++..+-+++ ++.|+..
T Consensus 100 yfwgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~~~~lg~~~ 170 (236)
T COG5522 100 YFWGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLVAISLGIMC 170 (236)
T ss_pred HHhhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHH
Confidence 33555567777777666 2 22223334667788888899999999998886655 4445443
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.91 E-value=2.9e+02 Score=25.99 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=21.0
Q ss_pred hhhcchhhhhhhhhhhhhhHHHHHHHH
Q 020283 185 WRMLLPFSYAIVSGAVGSFSVLFAKSL 211 (328)
Q Consensus 185 ~~~~~~l~y~~~sgilg~~svl~aK~~ 211 (328)
.+|+.++..+.++|++.|.+..-.+-+
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi 205 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYI 205 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHH
Confidence 356778999999999988887666444
No 100
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=25.72 E-value=4e+02 Score=23.58 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=32.8
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh
Q 020283 244 WMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL 292 (328)
Q Consensus 244 Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~ 292 (328)
|-.+.+-.++..|++ ..-+......+.+.+.+..+|+| ..+..++.
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~--~ls~~~~~ 210 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDA--KISSTFYL 210 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcC--CccHHHHH
Confidence 334577788888877 66667777888888888999987 34444444
No 101
>PRK11469 hypothetical protein; Provisional
Probab=25.04 E-value=4.2e+02 Score=23.57 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=10.4
Q ss_pred chhh-hhhhhhhccee
Q 020283 110 KVLV-ATAFIVLGNIF 124 (328)
Q Consensus 110 ~~~~-g~~li~~G~~~ 124 (328)
.|++ |++++++|+-.
T Consensus 166 a~~lgG~iLI~iGi~i 181 (188)
T PRK11469 166 AEILGGLVLIGIGVQI 181 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555 77888888654
No 102
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=21.90 E-value=5.9e+02 Score=22.89 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=7.0
Q ss_pred hh-hhhhhhhcc
Q 020283 112 LV-ATAFIVLGN 122 (328)
Q Consensus 112 ~~-g~~li~~G~ 122 (328)
++ |.+++.+|+
T Consensus 192 ~igGliLI~iG~ 203 (206)
T TIGR02840 192 FLSGILLILLGV 203 (206)
T ss_pred HHHHHHHHHHHH
Confidence 44 667777764
No 103
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=20.72 E-value=4.4e+02 Score=22.35 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCChHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhcchhhhhhhhhhhhhhHHHHHHHHHHH
Q 020283 135 VYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNL 214 (328)
Q Consensus 135 ~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sgilg~~svl~aK~~~~~ 214 (328)
+.|.+|-.|++ ++.++.|..+..++-++..+..|.+++ +. .++..+ +.......-.++++......|..+..
T Consensus 54 eTn~~Ea~ell-s~~~~~~~l~~~vlP~~~l~~~~i~~~-----~~-~~~~~~-r~~~~~~~l~~~~~~~~~~~~~~~~~ 125 (156)
T PF08019_consen 54 ETNTAEASELL-SWKLILWLLLLGVLPALLLWRVRIKKR-----SW-KRELLR-RLLLILLSLLVIAGIAFLFYKDYASF 125 (156)
T ss_pred HcCHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhcc-----cH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45677777777 666777766665543332222222110 00 011111 12222223344455566788888887
Q ss_pred HHH
Q 020283 215 LRL 217 (328)
Q Consensus 215 l~~ 217 (328)
.++
T Consensus 126 ~Rn 128 (156)
T PF08019_consen 126 FRN 128 (156)
T ss_pred Hhc
Confidence 764
No 104
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=8e+02 Score=23.83 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHHhccccccchhhhh
Q 020283 56 HSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVAT 115 (328)
Q Consensus 56 p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~ 115 (328)
.-++.|..+.++|...-...- =.+.+-++..++++.+..-..++|++-....++|.
T Consensus 100 ~al~fgl~L~~~g~~~l~~~v----n~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg 155 (304)
T COG0109 100 EALAFGLVLGVAGFSLLWFLV----NLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGG 155 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhccCCcccceeeee
Confidence 357788888777765442222 24455677788999999888899998877777765
Done!