Query 020283
Match_columns 328
No_of_seqs 156 out of 760
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 1.4E-08 4.9E-13 82.0 9.1 99 9-128 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.7 1.2E-08 4E-13 85.8 5.7 99 9-128 5-104 (137)
3 3b5d_A Multidrug transporter E 95.1 0.12 4E-06 41.0 8.8 61 240-302 39-104 (110)
4 2i68_A Protein EMRE; transmemb 94.5 0.055 1.9E-06 44.9 5.7 62 240-303 39-105 (137)
5 3o7q_A L-fucose-proton symport 26.7 2.3E+02 0.008 25.4 8.6 34 49-82 251-284 (438)
6 3arc_L Photosystem II reaction 11.5 2.5E+02 0.0086 17.5 3.2 22 228-249 16-37 (37)
7 3mk7_C Cytochrome C oxidase, C 8.4 8.8E+02 0.03 21.5 7.3 11 56-66 55-65 (311)
8 2hac_A T-cell surface glycopro 6.2 2.7E+02 0.0093 17.0 1.7 20 91-110 12-31 (33)
9 3arc_J Photosystem II reaction 5.8 2.2E+02 0.0075 18.2 1.2 11 54-64 7-17 (40)
10 2vda_B Maltoporin; sugar trans 3.3 3.2E+02 0.011 15.7 0.4 16 189-204 11-26 (28)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.82 E-value=1.4e-08 Score=81.99 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhchhHHHhhh-
Q 020283 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (328)
Q Consensus 9 ~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl- 87 (328)
++.+++.++-+.|+...|++.. .. +.+.++.+...+.+++.+...|+...|++.+.|+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~-----------------~~----~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~ 63 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG-----------------FT----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-----------------cc----hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4456777888999999998631 00 1234678888899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
.+++.++..+++.+++||+++..+++|+.+++.|+.++-..
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999998877553
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.72 E-value=1.2e-08 Score=85.77 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhchhHHHhhh-
Q 020283 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (328)
Q Consensus 9 ~Lal~ssi~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl- 87 (328)
++.+++.++-+.|+.+.|++... . +.+.++.|++++++++.++..++...|++.+.|+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g~-----------------~----~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw 63 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEGF-----------------T----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-----------------c----hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 34566778889999999986310 0 1234678999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccccccchhhhhhhhhhcceeEEee
Q 020283 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (328)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~~iv~~ 128 (328)
.+++.+++.+++.+++||+++..+++|+++++.|+.++...
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999877553
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.08 E-value=0.12 Score=40.98 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh-----hhhhhhhccc
Q 020283 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL-----KFGATLSSRF 302 (328)
Q Consensus 240 ~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~-----~fg~~l~~~~ 302 (328)
+...-.+++++|+|+.|.+..+|+....-++.+.+.|.++|+| +.+..+++ ..|+.+....
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E--~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344456789999999999999999899999999999999999 55666666 3377666543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=94.52 E-value=0.055 Score=44.90 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhhhhhcccccccCccchh-----hhhhhhhcccc
Q 020283 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVLCLSPFL-----KFGATLSSRFN 303 (328)
Q Consensus 240 ~~i~Ql~~LN~aL~~~~~~~vvPi~~v~~~~~ai~~G~i~f~E~~~~~~~~~~-----~fg~~l~~~~~ 303 (328)
+...-.+++++++++.|.+..+|+....-++.+.+.|.++|+|. .+..+++ +.|+.+....+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~--ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR--LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhcCC
Confidence 33444567899999999999999988899999999999999994 5566665 34777776433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=26.70 E-value=2.3e+02 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhchhH
Q 020283 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS 82 (328)
Q Consensus 49 ~~~~~~~p~W~~G~~l~~~g~~~~~~Al~~ap~s 82 (328)
.+..+|+|.+|............+.....+.|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888887777655444443333444444
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=11.48 E-value=2.5e+02 Score=17.50 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020283 228 WFTYSMLLLFFSTAGFWMARLN 249 (328)
Q Consensus 228 ~~~y~ll~~~~~~~i~Ql~~LN 249 (328)
-..|.++.+.+.+.++--||+|
T Consensus 16 SLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhhhccC
Confidence 3456777777777788888776
No 7
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.41 E-value=8.8e+02 Score=21.51 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=7.7
Q ss_pred chhHHHHHHHH
Q 020283 56 HSWRVGILVFL 66 (328)
Q Consensus 56 p~W~~G~~l~~ 66 (328)
|+||..++...
T Consensus 55 p~ww~~~f~~~ 65 (311)
T 3mk7_C 55 PRWWFLLFIGT 65 (311)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 78888776543
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.22 E-value=2.7e+02 Score=17.02 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhccccccc
Q 020283 91 QFVSNIAFSYFVFNKMVTVK 110 (328)
Q Consensus 91 ~lv~~~~~a~~~l~E~~~~~ 110 (328)
=++..+++..++.+||+.+.
T Consensus 12 L~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 12 LFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 35567777888888888764
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=5.83 E-value=2.2e+02 Score=18.17 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.2
Q ss_pred ccchhHHHHHH
Q 020283 54 HYHSWRVGILV 64 (328)
Q Consensus 54 ~~p~W~~G~~l 64 (328)
|-|+|.+|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 34889988765
No 10
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=3.28 E-value=3.2e+02 Score=15.67 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.0
Q ss_pred chhhhhhhhhhhhhhH
Q 020283 189 LPFSYAIVSGAVGSFS 204 (328)
Q Consensus 189 ~~l~y~~~sgilg~~s 204 (328)
.++..+.++|+++++.
T Consensus 11 lplavav~agv~~aqa 26 (28)
T 2vda_B 11 LPLAVAVAAGVMSAQA 26 (28)
T ss_dssp CTHHHHHHHHTTCCCC
T ss_pred CchHHHHHHHHhHhhh
Confidence 3788888889887653
Done!