Query 020283
Match_columns 328
No_of_seqs 156 out of 760
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 14:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020283.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020283hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 15.5 77 0.0056 18.2 3.2 21 229-249 17-37 (37)
2 d1ppje2 f.23.12.1 (E:1-69) Iro 8.4 97 0.0071 20.5 2.3 29 190-219 34-62 (69)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 7.7 1.6E+02 0.011 16.2 2.6 25 81-105 9-33 (34)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 5.2 2.9E+02 0.021 15.4 3.4 11 54-64 1-11 (34)
5 d1q90b_ f.21.1.2 (B:) Cytochro 5.0 2.2E+02 0.016 22.6 3.3 40 53-99 107-149 (212)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 4.1 6.4E+02 0.047 21.3 6.3 28 190-217 19-46 (444)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.8 2.7E+02 0.019 16.4 2.1 15 225-239 19-33 (42)
8 d1nekd_ f.21.2.2 (D:) Succinat 3.7 2.4E+02 0.018 19.6 2.2 47 114-162 21-67 (113)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.6 3.3E+02 0.024 22.1 3.3 39 57-102 113-151 (261)
10 d2btma_ c.1.1.1 (A:) Triosepho 3.0 1.5E+02 0.011 24.1 0.3 11 312-322 121-131 (251)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.54 E-value=77 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020283 229 FTYSMLLLFFSTAGFWMARLN 249 (328)
Q Consensus 229 ~~y~ll~~~~~~~i~Ql~~LN 249 (328)
..|.++.+.+.+.++--||+|
T Consensus 17 Ly~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 456777777777788888876
No 2
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.45 E-value=97 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 020283 190 PFSYAIVSGAVGSFSVLFAKSLSNLLRLAM 219 (328)
Q Consensus 190 ~l~y~~~sgilg~~svl~aK~~~~~l~~~~ 219 (328)
++.| .+.|..+..++-.+|.++.-+..++
T Consensus 34 ~fsY-l~~g~~~v~~ay~AK~~V~~fvssm 62 (69)
T d1ppje2 34 GFSY-LVTATTTVGVAYAAKNVVSQFVSSM 62 (69)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehh-hhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 6778 5566677777778999988776554
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=7.67 E-value=1.6e+02 Score=16.22 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=16.1
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHhcc
Q 020283 81 QSLLAALGSVQFVSNIAFSYFVFNK 105 (328)
Q Consensus 81 ~slv~Pl~~~~lv~~~~~a~~~l~E 105 (328)
..+|+...+.+++++.+...|.-+|
T Consensus 9 vvmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 9 VVMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhHHHHHHHHhhccc
Confidence 4566677777888877755544343
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.16 E-value=2.9e+02 Score=15.37 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.9
Q ss_pred ccchhHHHHHH
Q 020283 54 HYHSWRVGILV 64 (328)
Q Consensus 54 ~~p~W~~G~~l 64 (328)
|-|+|.+|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 35889888765
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.05 E-value=2.2e+02 Score=22.60 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=26.4
Q ss_pred cccc---hhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHH
Q 020283 53 VHYH---SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFS 99 (328)
Q Consensus 53 ~~~p---~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a 99 (328)
+|+| .|+.|+.++.+.....+..| +-|.+..++=...+..
T Consensus 107 yk~pre~~W~~Gv~l~~l~m~~aftGY-------~Lpw~q~sywa~~V~~ 149 (212)
T d1q90b_ 107 FKRPRELTWVTGVIMAVCTVSFGVTGY-------SLPWDQVGYWAVKIVT 149 (212)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHH-------HTTCBHHHHHHHHHHH
T ss_pred ccCcccceehHhHHHHHHHHHHHHhhh-------hcchhhHHHHHHHHHH
Confidence 4555 59999998876666555544 5677877765544443
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=4.13 E-value=6.4e+02 Score=21.28 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=18.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 020283 190 PFSYAIVSGAVGSFSVLFAKSLSNLLRL 217 (328)
Q Consensus 190 ~l~y~~~sgilg~~svl~aK~~~~~l~~ 217 (328)
.+..+.+-|++.|..+.+-+...+.+.+
T Consensus 19 ~~~la~liGi~~gl~~~~~~~~i~~~~~ 46 (444)
T d1otsa_ 19 ILFMAAVVGTLVGLAAVAFDKGVAWLQN 46 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667787777777666666665544
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.82 E-value=2.7e+02 Score=16.43 Aligned_cols=15 Identities=7% Similarity=0.250 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHH
Q 020283 225 LHSWFTYSMLLLFFS 239 (328)
Q Consensus 225 ~~~~~~y~ll~~~~~ 239 (328)
|-.|.+|..+++.+.
T Consensus 19 Fik~~t~~~i~~i~~ 33 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAA 33 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666655555443
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=3.72 E-value=2.4e+02 Score=19.58 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=27.3
Q ss_pred hhhhhhhcceeEEeecCCCCCCCChHHHHHHhcchhhHHHHHHHHHHHH
Q 020283 114 ATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVA 162 (328)
Q Consensus 114 g~~li~~G~~~iv~~g~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~ 162 (328)
+.+++.....++..+. ..+..+.++..+.+++|..-+...+.++...
T Consensus 21 Av~l~~l~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~ 67 (113)
T d1nekd_ 21 AIVLTLYIIYMVGFFA--TSGELTYEVWIGFFASAFTKVFTLLALFSIL 67 (113)
T ss_dssp HHHHHHHHHHHHHHHT--TTSSCCHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 4444444433332332 2355677999999999877766555554443
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.56 E-value=3.3e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.542 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhhhHHHHHHHHHHH
Q 020283 57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV 102 (328)
Q Consensus 57 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~ 102 (328)
.|+.|+.++.+-....+..| +-|.+..++=...+....+
T Consensus 113 ~W~~Gv~l~~l~~~~af~GY-------~Lpw~q~s~w~~~Vit~l~ 151 (261)
T d3cx5c2 113 LWNVGVIIFILTIATAFLGY-------CCVYGQMSHWGATVITNLF 151 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHCBHHHHHHHHHHHHGG
T ss_pred hHHhhHHHHHHHHHHHHhhh-------hcCCCcchhhHHHHHHHHH
Confidence 39999999877666665544 5678887776666665544
No 10
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.96 E-value=1.5e+02 Score=24.07 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=0.0
Q ss_pred ccceeecCccc
Q 020283 312 VPVFCIGSRKK 322 (328)
Q Consensus 312 ~~~~~~~~~~~ 322 (328)
.|++|||..++
T Consensus 121 ~pI~CiGE~~~ 131 (251)
T d2btma_ 121 IPIICCGESLE 131 (251)
T ss_dssp EEEEEECCCHH
T ss_pred eEEEEeccccc
Done!