Query 020287
Match_columns 328
No_of_seqs 226 out of 2363
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 14:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 4.8E-29 1.6E-33 203.2 22.3 191 31-325 2-205 (227)
2 2gj3_A Nitrogen fixation regul 99.8 1.2E-18 4.1E-23 126.7 16.3 117 17-137 4-120 (120)
3 1n9l_A PHOT-LOV1, putative blu 99.8 4.9E-17 1.7E-21 116.0 15.9 108 27-135 2-109 (109)
4 4hia_A LOV protein; PAS, HTH, 99.8 1.9E-17 6.7E-22 128.6 14.5 126 16-142 5-130 (176)
5 2pr5_A Blue-light photorecepto 99.8 3E-17 1E-21 121.3 14.5 119 22-143 3-121 (132)
6 3f1p_B ARYL hydrocarbon recept 99.7 3.4E-17 1.2E-21 119.0 12.0 115 20-138 4-120 (121)
7 3ue6_A Aureochrome1; PAS/LOV d 99.7 5.8E-17 2E-21 124.3 13.3 120 16-139 33-155 (166)
8 3t50_A Blue-light-activated hi 99.7 1.3E-16 4.3E-21 116.8 14.0 117 23-143 2-121 (128)
9 3p7n_A Sensor histidine kinase 99.7 2.2E-16 7.6E-21 130.6 15.7 121 15-139 60-183 (258)
10 3mr0_A Sensory box histidine k 99.7 2.3E-16 7.8E-21 118.1 13.4 123 15-141 6-130 (142)
11 3f1p_A Endothelial PAS domain- 99.7 1.5E-16 5.2E-21 114.7 11.2 108 27-138 8-116 (117)
12 4eet_B Phototropin-2; LOV, blu 99.7 9.9E-16 3.4E-20 109.4 15.4 111 23-137 2-115 (115)
13 4f3l_A Mclock, circadian locom 99.7 4E-16 1.4E-20 135.1 14.7 72 252-326 252-330 (361)
14 3lyx_A Sensory BOX/ggdef domai 99.7 3.2E-15 1.1E-19 107.7 15.4 119 16-138 5-123 (124)
15 3nja_A Probable ggdef family p 99.7 7.9E-16 2.7E-20 111.6 12.1 119 16-138 5-125 (125)
16 3mqq_A Transcriptional regulat 99.7 2.9E-16 1E-20 113.8 9.3 115 19-139 4-119 (120)
17 2z6d_A Phototropin-2; PAS-fold 99.7 5.6E-15 1.9E-19 107.2 15.9 122 16-141 4-128 (130)
18 3rty_A Period circadian protei 99.7 1.3E-15 4.6E-20 129.4 13.8 71 252-325 155-237 (339)
19 1d06_A Nitrogen fixation regul 99.6 3.3E-15 1.1E-19 109.9 13.7 124 4-134 3-130 (130)
20 3sw1_A Sensory box protein; li 99.6 4.1E-15 1.4E-19 113.4 13.3 124 16-143 23-149 (162)
21 3mxq_A Sensor protein; PSI2, M 99.6 1.4E-15 4.7E-20 114.6 10.4 120 15-139 19-150 (152)
22 2vv6_A FIXL, sensor protein FI 99.6 8.4E-15 2.9E-19 105.9 13.1 111 27-143 2-116 (119)
23 3h9w_A Diguanylate cyclase wit 99.6 3.1E-15 1.1E-19 107.5 10.2 111 27-140 2-113 (115)
24 2r78_A Sensor protein; sensory 99.6 2.5E-14 8.6E-19 103.1 15.0 110 15-134 8-117 (117)
25 3k3c_A Protein RV1364C/MT1410; 99.6 3.1E-15 1.1E-19 113.8 10.3 122 15-142 14-141 (158)
26 4f3l_B BMAL1B; BHLH, PAS, circ 99.6 3.6E-15 1.2E-19 130.1 11.9 73 251-326 278-358 (387)
27 3luq_A Sensor protein; PAS, hi 99.6 2E-14 6.7E-19 102.4 13.4 111 18-134 3-114 (114)
28 2wkq_A NPH1-1, RAS-related C3 99.6 1.4E-14 4.9E-19 124.2 14.9 116 22-141 15-133 (332)
29 3ewk_A Sensor protein; PAS dom 99.6 3E-14 1E-18 115.4 15.7 111 18-132 111-227 (227)
30 3kx0_X Uncharacterized protein 99.6 2.2E-14 7.4E-19 112.4 11.9 122 15-142 34-161 (185)
31 2v0u_A NPH1-1, LOV2; kinase, t 99.6 9.1E-14 3.1E-18 103.0 13.4 116 20-139 4-122 (146)
32 3icy_A Sensor protein; sensory 99.5 2.3E-14 8E-19 102.9 8.7 114 17-134 3-118 (118)
33 3bwl_A Sensor protein; structu 99.5 3.8E-13 1.3E-17 97.9 15.3 121 4-134 4-126 (126)
34 2kdk_A ARYL hydrocarbon recept 99.5 1.7E-13 5.7E-18 99.1 13.0 112 22-137 7-120 (121)
35 3olo_A Two-component sensor hi 99.5 2.4E-13 8.1E-18 97.5 13.6 108 16-134 11-118 (118)
36 2l0w_A Potassium voltage-gated 99.5 8.6E-13 2.9E-17 96.8 15.5 115 18-136 19-138 (138)
37 3mjq_A Uncharacterized protein 99.5 9.7E-14 3.3E-18 100.7 9.8 116 21-143 2-117 (126)
38 1byw_A Protein (human ERG pota 99.5 1.5E-12 5.3E-17 91.2 15.5 107 29-136 2-110 (110)
39 1n9l_A PHOT-LOV1, putative blu 99.5 5.4E-14 1.8E-18 100.0 7.5 77 250-326 2-85 (109)
40 3eeh_A Putative light and redo 99.5 3.2E-13 1.1E-17 97.3 10.6 116 15-134 8-125 (125)
41 1v9y_A Heme PAS sensor protein 99.5 6.7E-13 2.3E-17 101.3 12.3 123 15-143 37-163 (167)
42 4eho_A Bacteriophytochrome, PA 99.4 4.2E-14 1.4E-18 130.9 5.3 116 19-139 519-634 (635)
43 2gj3_A Nitrogen fixation regul 99.4 4.5E-13 1.6E-17 96.8 9.5 82 241-325 5-93 (120)
44 3vol_A Aerotaxis transducer AE 99.4 1.7E-12 5.8E-17 105.3 13.4 110 16-139 20-141 (233)
45 3d72_A Vivid PAS protein VVD; 99.4 2.8E-12 9.4E-17 96.2 13.2 106 22-132 30-149 (149)
46 4dj2_A Period circadian protei 99.4 6.8E-12 2.3E-16 105.7 13.7 71 252-325 177-256 (320)
47 3mfx_A Sensory BOX/ggdef famil 99.4 4E-12 1.4E-16 93.1 10.7 111 18-135 7-124 (129)
48 3fc7_A HTR-like protein, senso 99.4 6.4E-13 2.2E-17 96.3 6.2 108 16-134 17-125 (125)
49 4dj3_A Period circadian protei 99.4 3.7E-11 1.3E-15 101.1 17.3 71 252-325 175-255 (317)
50 2qkp_A Uncharacterized protein 99.3 8.7E-12 3E-16 93.7 11.4 116 18-140 19-137 (151)
51 1d06_A Nitrogen fixation regul 99.3 1.3E-12 4.4E-17 95.8 6.3 80 243-325 18-108 (130)
52 4hi4_A Aerotaxis transducer AE 99.3 2.7E-11 9.2E-16 87.6 13.2 106 17-136 4-121 (121)
53 2pr5_A Blue-light photorecepto 99.3 2.3E-12 8E-17 94.7 7.4 81 245-325 3-90 (132)
54 3fg8_A Uncharacterized protein 99.3 5.2E-12 1.8E-16 90.9 8.9 107 18-136 12-118 (118)
55 2r78_A Sensor protein; sensory 99.3 3.8E-12 1.3E-16 91.6 7.6 82 240-325 10-98 (117)
56 3gdi_A Period circadian protei 99.3 1.2E-11 4E-16 103.8 11.5 70 253-325 167-245 (309)
57 3f1p_B ARYL hydrocarbon recept 99.3 3.3E-12 1.1E-16 92.3 5.9 79 244-325 5-91 (121)
58 4f3l_A Mclock, circadian locom 99.3 7.6E-12 2.6E-16 108.2 8.5 108 28-139 251-359 (361)
59 2vlg_A Sporulation kinase A; h 99.3 1.9E-12 6.6E-17 92.0 3.8 77 246-325 4-84 (111)
60 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 2.1E-11 7.2E-16 106.3 10.5 106 29-138 279-386 (387)
61 4hia_A LOV protein; PAS, HTH, 99.3 1.4E-11 4.7E-16 95.2 8.4 84 242-325 8-98 (176)
62 2vlg_A Sporulation kinase A; h 99.3 2.5E-11 8.5E-16 86.2 8.9 90 22-117 3-92 (111)
63 3b33_A Sensor protein; structu 99.2 1.5E-10 5E-15 82.5 11.7 106 20-134 9-115 (115)
64 3mfx_A Sensory BOX/ggdef famil 99.2 5.4E-12 1.9E-16 92.4 3.6 55 242-299 8-62 (129)
65 3p7n_A Sensor histidine kinase 99.2 5.2E-11 1.8E-15 98.1 9.5 85 241-325 63-154 (258)
66 3bwl_A Sensor protein; structu 99.2 1.8E-11 6.1E-16 88.9 5.9 78 243-325 19-104 (126)
67 3f1p_A Endothelial PAS domain- 99.2 1.4E-11 4.6E-16 88.4 4.2 74 250-326 8-88 (117)
68 2kdk_A ARYL hydrocarbon recept 99.2 3.7E-11 1.3E-15 86.5 6.5 78 245-325 7-92 (121)
69 2vv6_A FIXL, sensor protein FI 99.2 2.5E-11 8.5E-16 87.3 5.6 73 250-325 2-85 (119)
70 4eet_B Phototropin-2; LOV, blu 99.1 1.3E-10 4.6E-15 82.2 7.8 80 246-325 2-88 (115)
71 3cax_A Uncharacterized protein 99.1 4.3E-10 1.5E-14 97.3 11.9 116 16-141 237-352 (369)
72 3ue6_A Aureochrome1; PAS/LOV d 99.1 2.2E-10 7.6E-15 87.1 8.5 87 239-325 33-126 (166)
73 3mqq_A Transcriptional regulat 99.1 5.2E-11 1.8E-15 85.7 4.3 79 243-325 5-91 (120)
74 3t50_A Blue-light-activated hi 99.1 3.8E-10 1.3E-14 81.8 7.2 80 246-325 2-88 (128)
75 3luq_A Sensor protein; PAS, hi 99.0 4.9E-10 1.7E-14 79.2 7.1 80 241-324 3-89 (114)
76 2wkq_A NPH1-1, RAS-related C3 99.0 5.5E-10 1.9E-14 95.5 7.7 81 245-325 15-102 (332)
77 1nwz_A PYP, photoactive yellow 99.0 1E-08 3.4E-13 73.1 12.5 100 21-127 20-121 (125)
78 3a0r_A Sensor protein; four he 99.0 3.4E-10 1.2E-14 97.5 5.8 116 17-143 7-123 (349)
79 3a0s_A Sensor protein; PAS-fol 99.0 1.1E-08 3.6E-13 69.3 12.3 95 27-132 1-96 (96)
80 3olo_A Two-component sensor hi 99.0 4.1E-10 1.4E-14 80.2 4.8 79 243-325 15-96 (118)
81 1mzu_A PPR; photoactive yellow 99.0 1.5E-08 5E-13 72.4 12.4 100 21-127 25-126 (129)
82 1ll8_A PAS kinase; PAS domain, 99.0 7E-10 2.4E-14 78.9 5.6 103 26-134 6-113 (114)
83 2w0n_A Sensor protein DCUS; si 99.0 2.4E-10 8.3E-15 81.4 3.1 104 15-134 12-118 (118)
84 2jhe_A Transcription regulator 98.9 2.1E-09 7.3E-14 84.0 8.0 108 15-138 77-190 (190)
85 3rty_A Period circadian protei 98.9 6.2E-09 2.1E-13 88.5 11.3 108 28-138 154-266 (339)
86 3d72_A Vivid PAS protein VVD; 98.9 1.6E-09 5.4E-14 80.9 6.8 79 246-325 31-127 (149)
87 3mxq_A Sensor protein; PSI2, M 98.9 4.2E-10 1.4E-14 84.4 3.6 67 243-313 24-90 (152)
88 3mr0_A Sensory box histidine k 98.9 2.8E-09 9.4E-14 79.1 7.2 84 240-326 8-100 (142)
89 2z6d_A Phototropin-2; PAS-fold 98.9 4.8E-09 1.6E-13 75.2 8.1 82 241-325 6-97 (130)
90 3icy_A Sensor protein; sensory 98.9 7.8E-10 2.7E-14 78.7 3.4 83 241-326 4-95 (118)
91 1ll8_A PAS kinase; PAS domain, 98.9 2.4E-09 8.2E-14 76.1 5.8 73 250-325 7-91 (114)
92 3nja_A Probable ggdef family p 98.9 1.7E-09 5.8E-14 77.6 5.1 82 241-325 7-97 (125)
93 3lyx_A Sensory BOX/ggdef domai 98.9 4.2E-09 1.5E-13 74.9 7.0 82 241-325 7-95 (124)
94 3fg8_A Uncharacterized protein 98.9 8.5E-10 2.9E-14 79.2 3.2 68 243-313 14-81 (118)
95 3mjq_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 78.6 4.0 78 245-325 3-86 (126)
96 2v0u_A NPH1-1, LOV2; kinase, t 98.8 6.6E-09 2.3E-13 76.3 6.9 80 243-325 4-93 (146)
97 3fc7_A HTR-like protein, senso 98.8 1.3E-09 4.5E-14 78.5 2.7 50 241-293 19-68 (125)
98 1nwz_A PYP, photoactive yellow 98.8 3.2E-09 1.1E-13 75.7 4.3 66 244-312 20-86 (125)
99 3sw1_A Sensory box protein; li 98.8 6.7E-09 2.3E-13 78.5 6.2 82 241-325 25-116 (162)
100 4dj3_A Period circadian protei 98.8 8.4E-08 2.9E-12 80.7 13.0 106 29-137 175-283 (317)
101 1mzu_A PPR; photoactive yellow 98.8 3.7E-09 1.3E-13 75.5 4.0 65 246-313 27-92 (129)
102 1byw_A Protein (human ERG pota 98.8 1.7E-08 5.7E-13 70.0 7.3 74 252-325 2-84 (110)
103 2l0w_A Potassium voltage-gated 98.8 2.4E-08 8.2E-13 72.5 7.8 83 243-325 21-112 (138)
104 3gdi_A Period circadian protei 98.7 2.1E-07 7.1E-12 78.0 12.2 105 30-137 167-273 (309)
105 3k3c_A Protein RV1364C/MT1410; 98.7 1.3E-08 4.6E-13 76.6 4.2 69 241-314 17-86 (158)
106 3b33_A Sensor protein; structu 98.7 1.2E-08 4.1E-13 72.4 3.6 50 243-295 9-58 (115)
107 3h9w_A Diguanylate cyclase wit 98.6 8.8E-09 3E-13 73.2 2.5 75 250-326 2-84 (115)
108 4dj2_A Period circadian protei 98.6 1.5E-07 5E-12 79.3 10.1 107 29-138 177-285 (320)
109 1v9y_A Heme PAS sensor protein 98.6 5.7E-08 1.9E-12 73.4 6.9 81 242-325 41-132 (167)
110 4hi4_A Aerotaxis transducer AE 98.6 3.1E-08 1.1E-12 71.2 5.0 50 242-294 6-67 (121)
111 3kx0_X Uncharacterized protein 98.6 2.8E-08 9.6E-13 77.2 4.4 68 241-313 37-105 (185)
112 3eeh_A Putative light and redo 98.6 3.6E-08 1.2E-12 70.2 3.7 83 240-325 10-101 (125)
113 4eho_A Bacteriophytochrome, PA 98.5 2.1E-07 7.3E-12 86.2 7.7 80 243-326 520-606 (635)
114 3vol_A Aerotaxis transducer AE 98.5 2.8E-07 9.7E-12 74.4 6.9 63 241-309 22-96 (233)
115 3a0s_A Sensor protein; PAS-fol 98.4 3E-07 1E-11 61.8 5.5 57 250-312 1-57 (96)
116 2w0n_A Sensor protein DCUS; si 98.4 2.5E-07 8.7E-12 65.3 4.3 52 241-295 15-69 (118)
117 2ykf_A Pdtas, probable sensor 97.7 4.3E-08 1.5E-12 82.4 0.0 113 23-146 175-296 (305)
118 2qkp_A Uncharacterized protein 98.3 3.1E-07 1.1E-11 68.7 4.1 68 241-313 19-89 (151)
119 2jhe_A Transcription regulator 98.3 7.7E-07 2.6E-11 69.3 5.5 53 241-296 80-132 (190)
120 3a0r_A Sensor protein; four he 98.3 2.2E-07 7.6E-12 79.7 2.3 49 243-294 10-58 (349)
121 2ykf_A Pdtas, probable sensor 97.5 1.5E-07 5E-12 79.1 0.0 46 246-295 175-223 (305)
122 3cax_A Uncharacterized protein 97.8 1.6E-05 5.3E-10 68.7 5.1 69 239-313 237-305 (369)
123 1oj5_A Steroid receptor coacti 97.4 0.00035 1.2E-08 49.5 6.2 101 31-135 10-114 (132)
124 1oj5_A Steroid receptor coacti 96.7 0.00099 3.4E-08 47.2 3.1 68 254-325 10-88 (132)
125 2ool_A Sensor protein; bacteri 93.9 0.038 1.3E-06 46.5 3.5 54 252-311 42-96 (337)
126 4ew7_A Conjugative transfer: r 90.5 0.59 2E-05 31.0 5.1 33 243-278 22-54 (127)
127 2ool_A Sensor protein; bacteri 87.6 0.77 2.6E-05 38.6 5.2 39 32-72 46-84 (337)
128 4dah_A Sporulation kinase D; a 87.0 8.7 0.0003 29.4 12.0 94 18-137 58-153 (217)
129 3s7o_A Bacteriophytochrome; bi 73.8 1.6 5.4E-05 36.6 2.2 42 252-295 52-94 (343)
130 4e04_A Bacteriophytochrome (li 70.5 1.5 5.1E-05 36.6 1.4 52 252-310 29-81 (327)
131 4ew7_A Conjugative transfer: r 70.4 21 0.00071 23.8 11.9 92 18-117 20-112 (127)
132 3lif_A Putative diguanylate cy 67.0 43 0.0015 26.1 10.8 93 18-136 58-154 (254)
133 4e04_A Bacteriophytochrome (li 62.2 58 0.002 27.0 9.3 52 31-89 32-83 (327)
134 3zq5_A Phytochrome-like protei 58.3 3 0.0001 37.3 1.0 43 252-296 29-72 (520)
135 3s7o_A Bacteriophytochrome; bi 37.7 20 0.00069 30.0 2.8 40 31-72 55-94 (343)
136 3pxp_A Helix-turn-helix domain 34.7 44 0.0015 27.3 4.3 37 239-278 97-133 (292)
137 3clo_A Transcriptional regulat 31.5 21 0.00071 28.4 1.9 32 251-284 43-74 (258)
138 2hje_A Autoinducer 2 sensor ki 28.0 2.1E+02 0.0071 22.1 10.1 86 24-134 58-143 (221)
139 3nhq_A Bacteriophytochrome; ph 27.6 22 0.00076 31.6 1.5 51 252-311 26-78 (505)
140 3pxp_A Helix-turn-helix domain 27.2 87 0.003 25.5 4.9 36 17-55 98-133 (292)
141 3c8c_A Methyl-accepting chemot 25.3 1.5E+02 0.005 22.3 5.9 29 107-136 118-147 (240)
142 3e4o_A C4-dicarboxylate transp 25.3 2.7E+02 0.0094 22.5 13.7 86 28-138 113-198 (305)
143 3nhq_A Bacteriophytochrome; ph 23.9 2.2E+02 0.0074 25.3 7.1 35 31-70 29-64 (505)
144 3zq5_A Phytochrome-like protei 21.7 37 0.0013 30.3 1.8 39 31-71 32-70 (520)
145 3c38_A Autoinducer 2 sensor ki 20.9 3.2E+02 0.011 21.8 8.2 88 24-136 77-164 (270)
146 3gz2_P Invasin IPAB, 62 kDa an 20.4 19 0.00066 21.0 -0.2 34 253-286 20-53 (78)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.97 E-value=4.8e-29 Score=203.16 Aligned_cols=191 Identities=19% Similarity=0.343 Sum_probs=167.1
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEEEEEE
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (328)
|+++|.+ |+++++|++|++++||++++++|++...+.++.........+++.+..+..+..+...+++||..+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6789999 9999999999999999999999999887776666677777788888889999999999999999999999
Q ss_pred EEEEeeeCCCCeEEEEEEEEeccccccccccccccccccCCCccchhhhhccccchhchhhhhhhhhhccccCCCCCCcc
Q 020287 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (328)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 190 (328)
++.|+.+ .+|.+.+++++.+|||++|++++++ +
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e~~l-----------------~----------------------------- 111 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEAEAQL-----------------A----------------------------- 111 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHHHHHH-----------------H-----------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHHHHHH-----------------H-----------------------------
Confidence 9999998 8999999999999999999982111 0
Q ss_pred ccccccchHHHHHHHhhhhhhhhhhccccccCCceeeeeeecCCCCccchhhHHHHHhhccCceEEeCCCCCCCCEEEec
Q 020287 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (328)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N 270 (328)
.+..++++++++|+++|.+ |+|+++|
T Consensus 112 ---------------------------------------------------~~~~~~~~~~~~i~~~d~~---g~i~~~N 137 (227)
T 3ewk_A 112 ---------------------------------------------------RLKQAMDANSEMILLTDRA---GRIIYAN 137 (227)
T ss_dssp ---------------------------------------------------HHHHHHHTCCSEEEEECTT---SCEEEEC
T ss_pred ---------------------------------------------------HHHHHHhcCcCeEEEEcCC---CcEEEEc
Confidence 0445788889999999998 9999999
Q ss_pred hhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------cccccc------eeeec
Q 020287 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RASMHS------TYLKL 325 (328)
Q Consensus 271 ~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~------~~~~~ 325 (328)
++|++++||+++|++|+++..+.+|.+.+.....+++++..+.+ ++++|+ .||..
T Consensus 138 ~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~ 205 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAE 205 (227)
T ss_dssp HHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEE
T ss_pred hHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEE
Confidence 99999999999999999999999999999999999998876653 456665 78864
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.81 E-value=1.2e-18 Score=126.67 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEE
Q 020287 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (328)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (328)
.++++.++++++++++++|.+ |+++++|++|++++||++++++|++...+.++.........++..+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999 99999999999999999999999988777766666555667778888888899999
Q ss_pred EEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccc
Q 020287 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (328)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k 137 (328)
..++++|..+|+.+++.|+.+ .+|.+.+++++.+|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 999999999999999999998 8999999999999999986
No 3
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.76 E-value=4.9e-17 Score=115.98 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=96.2
Q ss_pred CCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEE
Q 020287 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (328)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (328)
++++++++|...++|+++|+|++|++++||++++++|++...+.++.........+++++..+.++..++..+++||..+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999963334999999999999999999999999987777776666667788888999999999999999999999
Q ss_pred EEEEEEEEeeeCCCCeEEEEEEEEecccc
Q 020287 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (328)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIte 135 (328)
|+.+++.|+.+ ++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999998 89999999999999995
No 4
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.75 E-value=1.9e-17 Score=128.57 Aligned_cols=126 Identities=25% Similarity=0.409 Sum_probs=113.5
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
...+++.++++++++++++|.+.++|.++++|+++++++||++++++|++...+.++.........+...+..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 34578899999999999999876669999999999999999999999999888887777777778888888889999999
Q ss_pred EEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccccccc
Q 020287 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (328)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~ 142 (328)
....+++|..+|+.+++.|+.+ .+|.+.+++++++|||++|+++++
T Consensus 85 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 85 LRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHH
Confidence 9889999999999999999998 789999999999999999998555
No 5
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.75 E-value=3e-17 Score=121.27 Aligned_cols=119 Identities=35% Similarity=0.641 Sum_probs=99.0
Q ss_pred HHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEec
Q 020287 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (328)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (328)
.++++++++|+++|.++++|+++++|+++++++||++++++|++...+.++.........+...+..+.++..+...+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57899999999999972124999999999999999999999998877766666666566777788888888889889999
Q ss_pred CCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
||..+|+.+++.|+.+ . + +.+++++.+|||++|++|+++
T Consensus 83 dG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITe~k~~e~~l 121 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-E-D-KTYFVGIQNDITKQKEYEKLL 121 (132)
T ss_dssp TSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-C-C-eeEEEEEEEeCcHHHHHHHHH
Confidence 9999999999999987 4 4 788999999999999984443
No 6
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.73 E-value=3.4e-17 Score=118.99 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=97.0
Q ss_pred HHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHH-cCCCeeEEEEE
Q 020287 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLLN 98 (328)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 98 (328)
...+++++++.+++.|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+.+.+. .+.++..++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 456889999999999999 99999999999999999999999998888888777666666666664 45568889999
Q ss_pred EecCCCEEEEEEEEEEeeeCC-CCeEEEEEEEEeccccccc
Q 020287 99 YKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~-~g~~~~~~~~~~DIte~k~ 138 (328)
++++|..+|+.++..|+.+ + +|.+.+++++.+|||++|+
T Consensus 81 ~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 9999999999999999987 5 7888899999999999986
No 7
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.73 E-value=5.8e-17 Score=124.33 Aligned_cols=120 Identities=39% Similarity=0.656 Sum_probs=109.4
Q ss_pred hHHHHHHHHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 16 YTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
...++..++++++.+++++|. + |.++++|+++++++|+++++++|++...+.++.........+...+..+.++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 445788999999999999999 7 9999999999999999999999999887877777777777788888888889
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
..+.....++|..+|+.+.+.|+.+ .+|.+.+++++++|||++|++
T Consensus 110 ~~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 110 SVCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 9999999999999999999999998 889999999999999999987
No 8
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.72 E-value=1.3e-16 Score=116.83 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=102.7
Q ss_pred HHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEE
Q 020287 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (328)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (328)
++++++.+++++|. + |.++++|+++++++|+++++++|++...+.++.........+...+..+..+..+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 57889999999999 7 99999999999999999999999998878777777777777888888888888899999
Q ss_pred ecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
.++|..+|+.+++.|+.+ .+|.+.+++++++|||++|+++++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 7899999999999999999985543
No 9
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.71 E-value=2.2e-16 Score=130.61 Aligned_cols=121 Identities=30% Similarity=0.586 Sum_probs=105.8
Q ss_pred hhHHHHHHHHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC
Q 020287 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (328)
...++++.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 3446789999999999999999 7 889999999999999999999999988888888888778888888888999
Q ss_pred eeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
+..+....+++|..+|+.+++.|+.+ ++|.+.+++++++|||++|..
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~~ 183 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQPN 183 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC------
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhhh
Confidence 99999999999999999999999998 899999999999999999543
No 10
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.70 E-value=2.3e-16 Score=118.14 Aligned_cols=123 Identities=14% Similarity=0.217 Sum_probs=104.6
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCC--CCccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
.+.++++.+++.++.++|.+|.. +..+++|+++++++||+++++.+. .+..+.+|++...+...+..++..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 34457888999999999999999 899999999999999999987763 3445667777777777788888888888
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~ 141 (328)
..++++.+++|..+|+.....|+.+ .+|.+.+++|++.|||++|++|+
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~ 130 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDED 130 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHH
Confidence 9999999999999999999999998 89999999999999999999933
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.70 E-value=1.5e-16 Score=114.71 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=96.1
Q ss_pred CCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEE
Q 020287 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (328)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (328)
+++.+++.|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+.+.+..+..+..++++++++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45678899999 999999999999999999999999888888877776666777777777777778899999999999
Q ss_pred EEEEEEEEeeeCC-CCeEEEEEEEEeccccccc
Q 020287 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~~~~~~~DIte~k~ 138 (328)
|+.+...|+.+ + +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7899999999999999986
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.70 E-value=9.9e-16 Score=109.38 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=98.8
Q ss_pred HHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEE
Q 020287 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (328)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (328)
.+++++.+++++|. + |+++++|+++++++|+++++++|++...+.++.........+...+..+..+..+....
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 47889999999999 8 99999999999999999999999998777777777777777888888888888899889
Q ss_pred ecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccc
Q 020287 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (328)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k 137 (328)
.++|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 8899999999999999874
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.69 E-value=4e-16 Score=135.06 Aligned_cols=72 Identities=10% Similarity=-0.091 Sum_probs=60.3
Q ss_pred CceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc-------Ccccccceeee
Q 020287 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS-------NRASMHSTYLK 324 (328)
Q Consensus 252 ~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~ 324 (328)
..++..+.+ |+++|+|++++.++||+++|++|+++..++||++.+.....++..+..+. .++++|+..|.
T Consensus 252 ~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 252 EFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp EEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred eeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 455666777 99999999999999999999999999999999998888777877776553 24789999997
Q ss_pred cc
Q 020287 325 LQ 326 (328)
Q Consensus 325 ~~ 326 (328)
..
T Consensus 329 ~~ 330 (361)
T 4f3l_A 329 QT 330 (361)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 14
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.67 E-value=3.2e-15 Score=107.67 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=103.7
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
..++++.++++++.+++++|.+ |.++++|+++++++|+++++++|.+...+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 4467889999999999999999 9999999999999999999999998776655555555566677788888888888
Q ss_pred EEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccc
Q 020287 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~ 138 (328)
......+|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 8889999999999999999998 79999999999999999986
No 15
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.67 E-value=7.9e-16 Score=111.64 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=90.8
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCC--CCccccCCCCChhHHHHHHHHHHcCCCee
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPIE 93 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (328)
..++++.+++.++.+++++|.+ +.++++|+++++++|+++++++|. ....+.++.+...+...+...+..+.++.
T Consensus 5 ~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 5 AEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 4467888999999999999999 999999999999999999999883 33344556666666667777788888888
Q ss_pred EEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccc
Q 020287 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~ 138 (328)
.++++.+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 82 ~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 82 VEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 899999999999999999999998 89999999999999999985
No 16
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.66 E-value=2.9e-16 Score=113.81 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCC-hhHHHHHHHHHHcCCCeeEEEE
Q 020287 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (328)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (328)
.++.++++++.++++ +.+ |+++++|+++++++||++++++|++...+.++... ......+...+..+..+..+..
T Consensus 4 ~~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 367899999999964 668 99999999999999999999999987766654322 2334445566677778888999
Q ss_pred EEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
..+++|..+|+.++..|+. .++...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 9999999999999999984 456566788999999999985
No 17
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.66 E-value=5.6e-15 Score=107.19 Aligned_cols=122 Identities=38% Similarity=0.729 Sum_probs=103.8
Q ss_pred hHHHHHHHHhcCCcEEEEEc---CCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 16 YTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
....++.++++++.+++++| .+ +.++++|+++++++|++.++++|++...+.++.........+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 34567889999999999999 88 9999999999999999999999999877777766666677777788888888
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~ 141 (328)
..+......+|..+|+.+...|+.+ .+|.+.+++++++|||+++++++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC----
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhhc
Confidence 8888888899999999999999998 78999999999999999998743
No 18
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.66 E-value=1.3e-15 Score=129.39 Aligned_cols=71 Identities=10% Similarity=-0.060 Sum_probs=59.4
Q ss_pred CceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc------------Cccccc
Q 020287 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS------------NRASMH 319 (328)
Q Consensus 252 ~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~g 319 (328)
+.++..+++ |+++|+|+++..++||+++|++|+++..++||++.+...+.+...+..+. .++++|
T Consensus 155 ~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 155 KFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp EEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred eEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 566677777 99999999999999999999999999999999998887777777765443 136799
Q ss_pred ceeeec
Q 020287 320 STYLKL 325 (328)
Q Consensus 320 ~~~~~~ 325 (328)
+..|.-
T Consensus 232 ~~vWle 237 (339)
T 3rty_A 232 CYVLLE 237 (339)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988864
No 19
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.65 E-value=3.3e-15 Score=109.90 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=93.7
Q ss_pred hhhhHHHhhhhhhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHH
Q 020287 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (328)
Q Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (328)
++...++.+. ....+++.++++++++++++|.+ |.|+++|+++++++||++++++|++...+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4455666665 45567899999999999999999 9999999999999999999999998777765543332223333
Q ss_pred HHHHcCCC----eeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
.....+.. ...++..+++||..+|+.+++.|+.+ .+. .+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS--GGE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE--TTE-EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE--CCe-EEEEEEEEECc
Confidence 33333332 23466778999999999999999976 333 35788899997
No 20
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.63 E-value=4.1e-15 Score=113.43 Aligned_cols=124 Identities=23% Similarity=0.437 Sum_probs=110.4
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCC---CEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~---~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
..++++.+++.++.+++++|.+ + +++++|+++++++|++.++++|++...+.++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4567899999999999999999 8 999999999999999999999998877777766666777788888888888
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
..+......+|..+|+.+.+.|+.+ .+|.+.+++++++|||+++++++++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 8888888999999999999999998 7899999999999999999984443
No 21
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.63 E-value=1.4e-15 Score=114.56 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=93.5
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeE
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (328)
.....++.+++++++|++++|.+ |+|+++|+++++++|+++++++|++..++++. ....+...+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 44557899999999999999999 99999999999999999999999998888776 444455667778877765332
Q ss_pred EE---------E---EEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 95 NL---------L---NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 95 e~---------~---~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
.+ . ....+|...|..+++.|+.+ ++|.+.+++.++.|||+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 1 12345677888999999999 899999999999999999876
No 22
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.62 E-value=8.4e-15 Score=105.87 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC----eeEEEEEEecC
Q 020287 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKKD 102 (328)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~d 102 (328)
++++++++|.+ |.++++|+++++++||++++++|++...+.++.........+......+.. ...++..+++|
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 67899999999 999999999999999999999999877766544332222233333333332 23566778999
Q ss_pred CCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
|..+|+.+++.|+.+ .+. .+++++++|||++|++|+++
T Consensus 79 G~~~~~~~~~~~~~~--~~~-~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQS--GGE-PYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp SCEEEEEEEEEEEEE--TTE-EEEEEEEEECC---------
T ss_pred CCEEEEEEEEEEEEE--CCe-EEEEEEEEEcHHHHHHHHHH
Confidence 999999999999976 333 45788999999999985544
No 23
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.61 E-value=3.1e-15 Score=107.47 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=91.5
Q ss_pred CCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCC-CccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCE
Q 020287 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (328)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (328)
++.++|.+|.. ++.+.|+|+++++++||+++++.+.. +..+.+|++...+...+.+.+..+.++..++++++++|..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 46789999943 28889999999999999999998831 2234555555566667777888888888999999999999
Q ss_pred EEEEEEEEEeeeCCCCeEEEEEEEEeccccccccc
Q 020287 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (328)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e 140 (328)
+|+.+...|+.+ ++|.+.+++++..|||++|.+|
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCcccccc
Confidence 999999999998 8999999999999999999984
No 24
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.61 E-value=2.5e-14 Score=103.15 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=86.5
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeE
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (328)
...++++.++++++++|+++|.+ |+++++|+++++++||++++++|++...+.++... .........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCcEEE
Confidence 44578999999999999999999 99999999999999999999999986655433322 222334555666777888
Q ss_pred EEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
+...+++||..+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 8888999999999999988874 344 567889997
No 25
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.61 E-value=3.1e-15 Score=113.80 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=99.2
Q ss_pred hhHHHHHHHHhcCCcEEEEEc-CCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCee
Q 020287 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (328)
...++++.++++++.+++++| .+ ++++++|+++++++|++ +++|++...+.++.........+.+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 445689999999999999999 98 99999999999999999 8899987777766555455666777777787755
Q ss_pred EEEE-E--Ee-cC-CCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccccccc
Q 020287 94 VNLL-N--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (328)
Q Consensus 94 ~e~~-~--~~-~d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~ 142 (328)
.+.. + .. .+ |...|+.++..|+.+ .+|.+.+++++++|||++|+++++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~ 141 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 141 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHH
Confidence 4322 2 22 22 677899999999998 899999999999999999998443
No 26
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.61 E-value=3.6e-15 Score=130.08 Aligned_cols=73 Identities=10% Similarity=-0.036 Sum_probs=61.3
Q ss_pred cCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc--------Cccccccee
Q 020287 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS--------NRASMHSTY 322 (328)
Q Consensus 251 ~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~ 322 (328)
.+.++..+.+ |+++|+|++++.++||+++|++|+++..++||++.+.+...+...+..+. .+++||+..
T Consensus 278 ~~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 4567777877 99999999999999999999999999999999998888888877765432 246899999
Q ss_pred eecc
Q 020287 323 LKLQ 326 (328)
Q Consensus 323 ~~~~ 326 (328)
|...
T Consensus 355 Wv~~ 358 (387)
T 4f3l_B 355 TLRS 358 (387)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9753
No 27
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.60 E-value=2e-14 Score=102.42 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEE-
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL- 96 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~- 96 (328)
++++.++++++.+++++|.+ |+++++|+++++++|+++++++|++...+. +.........+..++. +.....+.
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 46788999999999999999 999999999999999999999999877766 3444444444444444 55544443
Q ss_pred EEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
.+..++|..+|+.+...|+.+ .+|.+.+++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 677889999999999999998 8999999999999997
No 28
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=1.4e-14 Score=124.23 Aligned_cols=116 Identities=39% Similarity=0.744 Sum_probs=106.2
Q ss_pred HHHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEE
Q 020287 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (328)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (328)
.+++.++++++++|. + |+++++|+++++++||++++++|++...+.++.........+.+.+..+..+..+.+.
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 468899999999999 8 9999999999999999999999999888877777777777888888899999999999
Q ss_pred EecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccc
Q 020287 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~ 141 (328)
.+++|..+|+.+++.|+.+ .+|.+.+++++.+|||++++.++
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhh
Confidence 9999999999999999998 88999999999999999998743
No 29
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.60 E-value=3e-14 Score=115.38 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEE
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (328)
..++.++++++++++++|.+ |+++++|+++++++||++++++|++...+.++.........+++.+..+.++.+++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 46778999999999999999 999999999999999999999999988888888888888889999999999999999
Q ss_pred EEecCCC------EEEEEEEEEEeeeCCCCeEEEEEEEEec
Q 020287 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (328)
Q Consensus 98 ~~~~dg~------~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (328)
.++++|. .+|+.+++.|+.+ .+|.+.+++++.+|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 9999886 8999999999998 89999999999887
No 30
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.2e-14 Score=112.41 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=98.4
Q ss_pred hhHHHHHHHHhcCCcEEEEEc-CCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCee
Q 020287 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (328)
...++++.++++++.+++++| .+ |+++++|+++++++|++ +++|++...+.++.........+.+++..+.+..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 455789999999999999999 98 99999999999999999 8899997777776655555566677777777765
Q ss_pred EEEEEE---ec-C-CCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccccccc
Q 020287 94 VNLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (328)
Q Consensus 94 ~e~~~~---~~-d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~ 142 (328)
.+.... .. + |...|+.+...|+.+ .+|.+.+++++++|||++|+++++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC-
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHH
Confidence 542222 22 2 677999999999998 899999999999999999999655
No 31
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.55 E-value=9.1e-14 Score=103.03 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=103.8
Q ss_pred HHHHHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEE
Q 020287 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (328)
Q Consensus 20 ~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (328)
++.+++.++.+++++|. + +.++++|+++++++|++.++++|++...+.++.........+...+..+.++..+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578899999999999 8 99999999999999999999999998777777777777777788888888888888
Q ss_pred EEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
....++|..+|+.+...|+.+ .+|.+.++++++.|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 888999999999999999998 789999999999999999884
No 32
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.54 E-value=2.3e-14 Score=102.86 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCC--ccccCCCCChhHHHHHHHHHHcCCCeeE
Q 020287 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIREERPIEV 94 (328)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (328)
.++++.++++++.+++.+|.+ +.+.++|+++++++||+++++.+... ..+.++++...+...+...+..+.++..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 467899999999999999999 99999999999999999999877643 3455666666666677777778888888
Q ss_pred EEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
++++.+++|..+|+.+...|+.+ ++|.+.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8899999999999997
No 33
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.54 E-value=3.8e-13 Score=97.90 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=85.9
Q ss_pred hhhhHHHhhhhhhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhc--CCCCccccCCCCChhHHHH
Q 020287 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIME 81 (328)
Q Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~--g~~~~~l~~~~~~~~~~~~ 81 (328)
.....++.+. +..++++.++++++++++++|.+ |+++++|+++++++||++++++ |++...+.+ +.......
T Consensus 4 ~r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~ 77 (126)
T 3bwl_A 4 ERKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQ 77 (126)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHH
Confidence 3455566665 66678999999999999999999 9999999999999999999995 555544443 21111111
Q ss_pred HHHHHHcCCCeeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 82 ~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
+ .....+.....+..+.+++|..+|+.++..++.. +|.. .++++++|||
T Consensus 78 ~-~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 78 L-SGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp H-HTCCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred H-HHHhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 1 1111233344566677899999999988888754 5554 5678889997
No 34
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-13 Score=99.07 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCC-CeeEEEEEEe
Q 020287 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (328)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (328)
.+++++++++++.|.+ |.++++|+++++++||++++++|++...+.++.+.......+.+.+..+. ....++++++
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 3677889999999999 99999999999999999999999987777777665555555555565434 3567888899
Q ss_pred cCCCEEEEEEEEEEeeeCCC-CeEEEEEEEEecccccc
Q 020287 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (328)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~-g~~~~~~~~~~DIte~k 137 (328)
++|..+|+.++..|+.+ .. +.+.+++++..||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56777889999999875
No 35
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.53 E-value=2.4e-13 Score=97.49 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=86.1
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
..++++.++++++++++++|.+ |+++++|+++++++||++++++|++...+.+...... ++.+..+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 3456788999999999999999 9999999999999999999999998777664432222 2334445667788
Q ss_pred EEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
..+.+++|..+|+.++..|+.. .+. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 8889999999999999999876 444 35678899997
No 36
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.51 E-value=8.6e-13 Score=96.76 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCcEEEEEcC---CCCCCCEEEechHHHHhhCCChhhhcCCC--CccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 18 LWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
+.+...+++++.+++++|. + +.++++|+++++++|++.++++|++ ...+.++.........+...+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 4556677889999999999 8 9999999999999999999999998 555655555555566667777777778
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
..+.....++|..+|+.+...|+.+ .+|.+.+++++.+|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 8888888899999999999999998 789999999999999975
No 37
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.50 E-value=9.7e-14 Score=100.73 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=85.8
Q ss_pred HHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEe
Q 020287 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (328)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (328)
+.++++++++++++|.+ |.++++|+++++++|+++++++|++...+.++.........+......+.. ..+..+..
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999999 999999999999999999999999877777665554444455555544444 67778888
Q ss_pred cCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
++|..+|+.+...|+.. +...+++++++|||++|+++++.
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhccc
Confidence 99999999998887654 33567889999999999985554
No 38
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.50 E-value=1.5e-12 Score=91.16 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCC--CccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEE
Q 020287 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (328)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (328)
.+++++|...++|.++++|+++++++|+++++++|++ ...+.++.........+...+..+..+..+.....++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888743349999999999999999999999997 45555555555556677777778888888888889999999
Q ss_pred EEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
|+.+...|+.+ .+|.+.+++++.+|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999975
No 39
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.49 E-value=5.4e-14 Score=100.02 Aligned_cols=77 Identities=38% Similarity=0.692 Sum_probs=67.1
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc-------Cccccccee
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS-------NRASMHSTY 322 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~ 322 (328)
++++|+++|+..+||+|+|+|++|++++||+++|++|+++..+.+|.........++.++..+. .++|||+.|
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 5789999997666799999999999999999999999999999888888888888888887665 357999999
Q ss_pred eecc
Q 020287 323 LKLQ 326 (328)
Q Consensus 323 ~~~~ 326 (328)
|...
T Consensus 82 ~~~~ 85 (109)
T 1n9l_A 82 WNLL 85 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9753
No 40
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.47 E-value=3.2e-13 Score=97.28 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=92.3
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCC--CccccCCCCChhHHHHHHHHHHcCCCe
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (328)
+..++++.++++++.+++++|.+ ++.++++|+++++++|+++++++|.. ...+.++.+...+...+.. +..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 44567899999999999999975 37899999999999999999998876 2333333333333333333 5667778
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
..++.+..++|...|+.+...|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888888899999999999999998 8999999999999997
No 41
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.46 E-value=6.7e-13 Score=101.28 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC---
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (328)
.....+..+++.++.+++++|.+ |.++++|++++.++|++.++++|++...+.++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 34456888999999999999999 999999999999999999999999877776655444443444444433322
Q ss_pred -eeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccccc
Q 020287 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 92 -~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~ 143 (328)
+..+......+|..+|+.+...|+.. +|.+. ++++++|||+++++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~~-~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVSA--EGKVY-YLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEEE--TTEEE-EEEEEEC-----------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEec--CCCEE-EEEEEecCcHHHHHHHHH
Confidence 34567778889999999999999954 67664 889999999999985443
No 42
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.45 E-value=4.2e-14 Score=130.94 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=102.6
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEE
Q 020287 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (328)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (328)
++..++++++++++++|.+ |+++++|+++++++||+.++.+|+......++.+. .....+.+.+..+..+.++++.
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~-~~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESN-DFLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCT-HHHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCH-HHHHHHHHHHHcCCcEEEEEEE
Confidence 4667889999999999999 99999999999999999999999876555555444 3456677888888889999999
Q ss_pred EecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
+++||+.+|+.+++.|+++ .+|.+.+++++.+|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 899999999999999999987
No 43
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.44 E-value=4.5e-13 Score=96.81 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=70.2
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC------
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN------ 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~------ 314 (328)
..++.++++++++|+++|.+ |+|+|+|++|++++||+++|++|+++..+.++.........+...+..+..
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLV 81 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 45778999999999999999 999999999999999999999999999888877777777777777665543
Q ss_pred -cccccceeeec
Q 020287 315 -RASMHSTYLKL 325 (328)
Q Consensus 315 -~~~~g~~~~~~ 325 (328)
+++||+.+|..
T Consensus 82 ~~~~dG~~~~~~ 93 (120)
T 2gj3_A 82 NRRKDKTLYLAE 93 (120)
T ss_dssp EECTTSCEEEEE
T ss_pred EEcCCCCEEEEE
Confidence 47899998864
No 44
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.44 E-value=1.7e-12 Score=105.35 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=85.7
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhh------------CCChhhhcCCCCccccCCCCChhHHHHHH
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~------------g~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (328)
...++..++++++.+++++|.+ |+|+|+|+++++++ ||++++++|++...+.+. +.....++
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 3467888999999999999999 99999999999998 899999999998777642 22222333
Q ss_pred HHHHcCCCeeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccc
Q 020287 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~ 139 (328)
+.+. ..+..++ ..+|. |+.+++.|+.+ ++|.+.|++++++|||+++++
T Consensus 94 ~~~~--~~~~~~~---~~~g~--~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAEL---NLGGR--RFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEE---EETTE--EEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEE---EECCE--EEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 3221 2333333 23453 77899999998 899999999999999999997
No 45
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.43 E-value=2.8e-12 Score=96.20 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=90.9
Q ss_pred HHHhcCCcEEEEEc---CCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCC-----------ChhHHHHHHHHHH
Q 020287 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (328)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (328)
.+++.. .+++++| .+ |+++++|+++++++||++++++|++...+.++.. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 456664 8999999 67 9999999999999999999999999877776653 5556667777888
Q ss_pred cCCCeeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEec
Q 020287 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (328)
Q Consensus 88 ~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (328)
.+..+..+....+++|..+|+.++..|+.+ .+|.+.+++++.+|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888898889999999999999999998 88999999988776
No 46
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.38 E-value=6.8e-12 Score=105.66 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=57.9
Q ss_pred CceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhc-CcC--------ccccccee
Q 020287 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGK-HSN--------RASMHSTY 322 (328)
Q Consensus 252 ~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--------~~~~g~~~ 322 (328)
..+...+.+ |+++|+|+++..++||.++|++|+++.+++||++.+...+...+.+.. +.. +++||+..
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345556666 999999999999999999999999999999999988777777777663 221 36899988
Q ss_pred eec
Q 020287 323 LKL 325 (328)
Q Consensus 323 ~~~ 325 (328)
|.-
T Consensus 254 wve 256 (320)
T 4dj2_A 254 TMD 256 (320)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 47
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.38 E-value=4e-12 Score=93.08 Aligned_cols=111 Identities=11% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCC-------
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------- 90 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 90 (328)
..+..++++++++++++|.+ |+|+++|+++++++||++++++|++...+.++.........+......+.
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 46888999999999999999 99999999999999999999999998877766554322111111111111
Q ss_pred CeeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccc
Q 020287 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (328)
Q Consensus 91 ~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte 135 (328)
....+...+++||..+|+.+++.|+.+ ... .++++++|...
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~-~~~---~~v~~~~~~~~ 124 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPG-HEP---MFVMVMHDLEH 124 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECS-SSC---EEEEEEEEC--
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecC-CCc---EEEEEEechhh
Confidence 234688888999999999999999875 232 35677777653
No 48
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.37 E-value=6.4e-13 Score=96.31 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=73.2
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
..++++.++++++++++++|.+ |+++++|+++++++|+++++++|++...+.++................+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5578899999999999999999 9999999999999999999999999777663221111212223444444433
Q ss_pred EEEEecCCC-EEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 96 ~~~~~~dg~-~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
...+|. ..|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 123344 6789999999876 466678899999997
No 49
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.36 E-value=3.7e-11 Score=101.06 Aligned_cols=71 Identities=7% Similarity=-0.027 Sum_probs=58.2
Q ss_pred CceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC----------cccccce
Q 020287 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN----------RASMHST 321 (328)
Q Consensus 252 ~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~ 321 (328)
..+...+.+ |+++|+|+++..++||+++|++|+++.+++||++.+...+...+.++.+.. +++||+.
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345556666 999999999999999999999999999999999998888777777664321 3689998
Q ss_pred eeec
Q 020287 322 YLKL 325 (328)
Q Consensus 322 ~~~~ 325 (328)
.|.-
T Consensus 252 vwve 255 (317)
T 4dj3_A 252 VILD 255 (317)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 50
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.35 E-value=8.7e-12 Score=93.74 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechH---HHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeE
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~---~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (328)
.++..++++++.+++++|.+ |+++|+|++ +++++| ..++++|++...+.++. .......+.+.+..+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 56889999999999999999 999999999 999999 55789999987665422 22233456667777777666
Q ss_pred EEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccccc
Q 020287 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (328)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e 140 (328)
++.....+ ...++.++..|+++ ++|.+.|++.+++|||+.++.+
T Consensus 94 ~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le 137 (151)
T 2qkp_A 94 NMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELD 137 (151)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGG
T ss_pred EEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhh
Confidence 65543332 12467888999998 7899999999999999998873
No 51
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.34 E-value=1.3e-12 Score=95.85 Aligned_cols=80 Identities=21% Similarity=0.128 Sum_probs=62.5
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcC----------
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKH---------- 312 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~---------- 312 (328)
+..++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.........+......+
T Consensus 18 ~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 94 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRV 94 (130)
T ss_dssp HHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEE
T ss_pred HHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeE
Confidence 777999999999999998 9999999999999999999999999988876654433333333332221
Q ss_pred -cCcccccceeeec
Q 020287 313 -SNRASMHSTYLKL 325 (328)
Q Consensus 313 -~~~~~~g~~~~~~ 325 (328)
..+++||+.||..
T Consensus 95 ~~~~~kdG~~~~~~ 108 (130)
T 1d06_A 95 VSGQRKDGSTFPMK 108 (130)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEeCCCCEEEEE
Confidence 1257899999864
No 52
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.34 E-value=2.7e-11 Score=87.61 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhC------------CChhhhcCCCCccccCCCCChhHHHHHHH
Q 020287 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (328)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (328)
..+++.++++++++++++|.+ |+|+++|+++++++| +++++++|++...+.+. ......+.+
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 357889999999999999999 999999999999996 88999999987766542 222222222
Q ss_pred HHHcCCCeeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
... ..+..+.. .+|. ++.+++.|+.+ ++|.+.|++++++|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 221 23333332 2444 56788999998 789999999999999974
No 53
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.33 E-value=2.3e-12 Score=94.70 Aligned_cols=81 Identities=30% Similarity=0.577 Sum_probs=65.3
Q ss_pred HHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------ccc
Q 020287 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RAS 317 (328)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~ 317 (328)
.++++++++|+++|.+.+||+|+|+|++|++++||+++|++|+++..+.+|.........+...+..+.+ +++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 3688899999999987223599999999999999999999999998888887777777777777665543 578
Q ss_pred ccceeeec
Q 020287 318 MHSTYLKL 325 (328)
Q Consensus 318 ~g~~~~~~ 325 (328)
||+.+|..
T Consensus 83 dG~~~~~~ 90 (132)
T 2pr5_A 83 DGTMFWNE 90 (132)
T ss_dssp TSCEEEEE
T ss_pred CCCeeeeE
Confidence 99999865
No 54
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.33 E-value=5.2e-12 Score=90.94 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEE
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (328)
...+.++++++++++++|.+ |+++++|+++++++|+++++++|++...+.++.........+.+++..+.+...++.
T Consensus 12 ~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (118)
T 3fg8_A 12 SGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVD 88 (118)
T ss_dssp -CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEE
T ss_pred chHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEE
Confidence 34567899999999999999 999999999999999999999999977777655555566677788888887776432
Q ss_pred EEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
....+| .|+.+.+.|+.+ +++++++|||++
T Consensus 89 ~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 89 SLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp CSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 233355 477888888643 367888999985
No 55
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.32 E-value=3.8e-12 Score=91.56 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=61.9
Q ss_pred hhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc------
Q 020287 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS------ 313 (328)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 313 (328)
++.++.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.... ....+...+..+.
T Consensus 10 e~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~ 85 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLREER 85 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEEEE
Confidence 345788999999999999998 999999999999999999999999987775443322 2222233333322
Q ss_pred -Ccccccceeeec
Q 020287 314 -NRASMHSTYLKL 325 (328)
Q Consensus 314 -~~~~~g~~~~~~ 325 (328)
.+++||+.+|..
T Consensus 86 ~~~~kdG~~~~v~ 98 (117)
T 2r78_A 86 TVWTRNGDQLTVE 98 (117)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEecCCCEEEEE
Confidence 357899999875
No 56
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.32 E-value=1.2e-11 Score=103.82 Aligned_cols=70 Identities=9% Similarity=-0.062 Sum_probs=56.5
Q ss_pred ceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc---------Ccccccceee
Q 020287 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS---------NRASMHSTYL 323 (328)
Q Consensus 253 ~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~ 323 (328)
.+...+.+ |+++|+|+++..++||.++|++|+++.+++||++.....+...+.+..+. -++++|+..|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45556666 99999999999999999999999999999999998777776766665321 2368999888
Q ss_pred ec
Q 020287 324 KL 325 (328)
Q Consensus 324 ~~ 325 (328)
.-
T Consensus 244 ve 245 (309)
T 3gdi_A 244 LD 245 (309)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 57
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.29 E-value=3.3e-12 Score=92.28 Aligned_cols=79 Identities=8% Similarity=-0.001 Sum_probs=66.7
Q ss_pred HHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhc-Cc-------Cc
Q 020287 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGK-HS-------NR 315 (328)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~-~~-------~~ 315 (328)
..+++++++.|+++|.+ |+++|+|+++++++||+++|++|+++..+++|++.+.....+...+.. +. .+
T Consensus 5 ~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred cceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE
Confidence 34788899999999999 999999999999999999999999999999999988888888887743 22 24
Q ss_pred ccccceeeec
Q 020287 316 ASMHSTYLKL 325 (328)
Q Consensus 316 ~~~g~~~~~~ 325 (328)
+++|+.+|..
T Consensus 82 ~~dG~~~w~~ 91 (121)
T 3f1p_B 82 SKNQEWLWMR 91 (121)
T ss_dssp CTTSCEEEEE
T ss_pred ecCCCEEEEE
Confidence 7899999875
No 58
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.28 E-value=7.6e-12 Score=108.17 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=93.7
Q ss_pred CcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEEE
Q 020287 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (328)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (328)
...++..+.+ |.++|+|+++..++||++++++|+++..+.+|++...+...+.+.+..+.....++++++++|..+|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3455667778 9999999999999999999999999888888877766667777777777777778899999999999
Q ss_pred EEEEEEEeeeCC-CCeEEEEEEEEecccccccc
Q 020287 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (328)
Q Consensus 108 ~~~~~~~~~~~~-~g~~~~~~~~~~DIte~k~~ 139 (328)
+.....|+.+ + +|++.+++++.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999998 6 79999999999999999764
No 59
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.27 E-value=1.9e-12 Score=92.03 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=58.7
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhh----cCcCcccccce
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKG----KHSNRASMHST 321 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ 321 (328)
++++++++|+++|.+ |+|+|+|+++++++||+++|++|+++.++.||++.+.....+..... +.+.+++||+.
T Consensus 4 lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~~~~~~~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 4 PLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYNEHHLMPCTFRFIKKDHTI 80 (111)
T ss_dssp -----CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHCSCCSSCEEEEEECTTSCE
T ss_pred hhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhccCCCccEEEEEEcCCCCE
Confidence 678889999999988 99999999999999999999999999999999997776655432111 11224799999
Q ss_pred eeec
Q 020287 322 YLKL 325 (328)
Q Consensus 322 ~~~~ 325 (328)
+|..
T Consensus 81 ~wve 84 (111)
T 2vlg_A 81 VWVE 84 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 60
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.26 E-value=2.1e-11 Score=106.28 Aligned_cols=106 Identities=8% Similarity=0.041 Sum_probs=86.2
Q ss_pred cEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC-eeEEEEEEecCCCEEE
Q 020287 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFW 107 (328)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dg~~~~ 107 (328)
..++..+.+ |.++|+|+++..++||++++++|+++..+.+|++...+...+.+.+..+.. ...+++++++||..+|
T Consensus 279 ~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 279 EYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp EEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred eEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 356667778 999999999999999999999999988888777666666666666655544 4568899999999999
Q ss_pred EEEEEEEeeeCC-CCeEEEEEEEEeccccccc
Q 020287 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 108 ~~~~~~~~~~~~-~g~~~~~~~~~~DIte~k~ 138 (328)
+.....++.+ + +|.+.+++++.+|||+||+
T Consensus 356 v~~~~~~~~~-~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 356 LRSRWFSFMN-PWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEE-TTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEC-CCCCCEEEEEEEEEEcchhhc
Confidence 9999999988 5 7899999999999999975
No 61
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.26 E-value=1.4e-11 Score=95.19 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=73.8
Q ss_pred hHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------
Q 020287 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN------- 314 (328)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 314 (328)
.+..++++++++|+++|.+.+||+|+++|++|++++||++++++|+++..+.++.........+...+..+.+
T Consensus 8 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 87 (176)
T 4hia_A 8 KIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRN 87 (176)
T ss_dssp HHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEE
Confidence 3777999999999999987777999999999999999999999999999999888888888888888776643
Q ss_pred cccccceeeec
Q 020287 315 RASMHSTYLKL 325 (328)
Q Consensus 315 ~~~~g~~~~~~ 325 (328)
.+++|+.+|..
T Consensus 88 ~~~dG~~~~~~ 98 (176)
T 4hia_A 88 YRANDEPFDNL 98 (176)
T ss_dssp ECTTCCEEEEE
T ss_pred EcCCCCEEEEE
Confidence 46799999864
No 62
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.26 E-value=2.5e-11 Score=86.25 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=67.1
Q ss_pred HHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEec
Q 020287 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (328)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (328)
.+++++++.++++|.+ |.++|+|+++++++||++++++|++...+.+|++.......+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4788999999999999 9999999999999999999999999877777766544332221 223334567888999
Q ss_pred CCCEEEEEEEEEEeee
Q 020287 102 DGTPFWMLFKMSLVFG 117 (328)
Q Consensus 102 dg~~~~~~~~~~~~~~ 117 (328)
||+.+|+.+++.++.+
T Consensus 77 dG~~~wve~~~~~v~~ 92 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT 92 (111)
T ss_dssp TSCEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEec
Confidence 9999999999999887
No 63
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.23 E-value=1.5e-10 Score=82.53 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=80.6
Q ss_pred HHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCe-eEEEEE
Q 020287 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (328)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (328)
...++++++++++++|.+ |+++++|+++++++|+++++++|++...+.++... ....+.+++..+.+. ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456899999999999999 99999999999999999999999986665443211 122344555556554 345555
Q ss_pred EecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
. ++|..+|+.+++.|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78988999999999976 565 57888899985
No 64
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.21 E-value=5.4e-12 Score=92.35 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=50.2
Q ss_pred hHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCH
Q 020287 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299 (328)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~ 299 (328)
.+..+++++++||+++|.+ |+|+++|+++++++||++++++|+++..+.++....
T Consensus 8 ~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~ 62 (129)
T 3mfx_A 8 TIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQA 62 (129)
T ss_dssp HHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCG
T ss_pred HHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHH
Confidence 3777999999999999999 999999999999999999999999999888776643
No 65
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.20 E-value=5.2e-11 Score=98.14 Aligned_cols=85 Identities=27% Similarity=0.420 Sum_probs=72.8
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC------
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN------ 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~------ 314 (328)
..+..++++++++|+++|....||+|+++|++|++++||+++|++|+++.++.+|.+.+.....+...+..+.+
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 142 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEIL 142 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 44888999999999999992112899999999999999999999999999999999888888888888776543
Q ss_pred -cccccceeeec
Q 020287 315 -RASMHSTYLKL 325 (328)
Q Consensus 315 -~~~~g~~~~~~ 325 (328)
+++||+.+|..
T Consensus 143 ~~~~dG~~~~~~ 154 (258)
T 3p7n_A 143 NYKKDGTPFRNA 154 (258)
T ss_dssp EECTTSCEEEEE
T ss_pred EEcCCCCEEEEe
Confidence 46899999864
No 66
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.20 E-value=1.8e-11 Score=88.88 Aligned_cols=78 Identities=18% Similarity=-0.023 Sum_probs=57.1
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccc--cccCcccccCCCCCHHHHHHHHhhhhcC------cC
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQSSTDKGKH------SN 314 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~--iG~~~~~l~~~~~~~~~~~~~~~~~~~~------~~ 314 (328)
++.++++++++|+++|.+ |+|+++|+++++++||+++|+ +|+++..+.+ +.......+......+ ..
T Consensus 19 ~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~ 93 (126)
T 3bwl_A 19 LEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDERRKFEGLY 93 (126)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTCEEEEEEEE
T ss_pred HHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCCCcceEEEE
Confidence 677899999999999998 999999999999999999999 5677776664 2233333322222211 12
Q ss_pred cccccceeeec
Q 020287 315 RASMHSTYLKL 325 (328)
Q Consensus 315 ~~~~g~~~~~~ 325 (328)
.++||+.+|..
T Consensus 94 ~~~dG~~~~~~ 104 (126)
T 3bwl_A 94 ERRDGSTMSVE 104 (126)
T ss_dssp ECTTSCEEEEE
T ss_pred EeCCCCEEEEE
Confidence 47899988864
No 67
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.18 E-value=1.4e-11 Score=88.38 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=63.7
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------ccccccee
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RASMHSTY 322 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~ 322 (328)
+++.|+++|++ |+++|+|+++++++||+++|++|+++..+.+|++.+.....+..++..+.. ++++|+.+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 36788899988 999999999999999999999999999999999988888888877765532 46899999
Q ss_pred eecc
Q 020287 323 LKLQ 326 (328)
Q Consensus 323 ~~~~ 326 (328)
|...
T Consensus 85 w~~~ 88 (117)
T 3f1p_A 85 WLET 88 (117)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 68
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.18 E-value=3.7e-11 Score=86.53 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=65.5
Q ss_pred HHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc--------Ccc
Q 020287 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS--------NRA 316 (328)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~ 316 (328)
.++++++++|+++|.+ |+++|+|+++++++||+++|++|+++..+.+|++.......+...+..+. .++
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 3677889999999998 99999999999999999999999999999999887777777766665422 246
Q ss_pred cccceeeec
Q 020287 317 SMHSTYLKL 325 (328)
Q Consensus 317 ~~g~~~~~~ 325 (328)
+||+.+|..
T Consensus 84 ~dG~~~~~~ 92 (121)
T 2kdk_A 84 KDGSFVTLK 92 (121)
T ss_dssp SSSCEEEEE
T ss_pred cCCCEEEEE
Confidence 899998864
No 69
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.18 E-value=2.5e-11 Score=87.33 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=54.8
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcC-----------cCcccc
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKH-----------SNRASM 318 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 318 (328)
++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.........+......+ ..+++|
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 57999999999 9999999999999999999999999988876554333333333322221 124789
Q ss_pred cceeeec
Q 020287 319 HSTYLKL 325 (328)
Q Consensus 319 g~~~~~~ 325 (328)
|+.||..
T Consensus 79 G~~~~~~ 85 (119)
T 2vv6_A 79 GTTFPMH 85 (119)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 9998864
No 70
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.14 E-value=1.3e-10 Score=82.19 Aligned_cols=80 Identities=36% Similarity=0.666 Sum_probs=64.4
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------cccc
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RASM 318 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 318 (328)
++++++++|+++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+.. .+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 467889999999992223999999999999999999999999999998888888888888887766543 3578
Q ss_pred cceeeec
Q 020287 319 HSTYLKL 325 (328)
Q Consensus 319 g~~~~~~ 325 (328)
|..+|..
T Consensus 82 g~~~~~~ 88 (115)
T 4eet_B 82 GKKFWNL 88 (115)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 8888753
No 71
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.12 E-value=4.3e-10 Score=97.35 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=93.0
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
...++..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..+.++. .......+..++.++.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 3457889999999999999999 999999999 9999 889999999987776532 223344566677777766555
Q ss_pred EEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccccccc
Q 020287 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (328)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~ 141 (328)
.... .+| .++.++..|+++ .+|.+.|++.+++|||+.++.++
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCCS
T ss_pred EEEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHHH
Confidence 5443 355 478889999998 79999999999999999988743
No 72
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.11 E-value=2.2e-10 Score=87.12 Aligned_cols=87 Identities=38% Similarity=0.621 Sum_probs=72.8
Q ss_pred chhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC----
Q 020287 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN---- 314 (328)
Q Consensus 239 ~~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 314 (328)
....+..++++++++|+++|...+||+|+++|++|++++||++++++|+++..+.++.........+...+..+.+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 112 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVC 112 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEE
Confidence 3455888999999999999983233999999999999999999999999999898888888888888887766543
Q ss_pred ---cccccceeeec
Q 020287 315 ---RASMHSTYLKL 325 (328)
Q Consensus 315 ---~~~~g~~~~~~ 325 (328)
.+++|..+|..
T Consensus 113 ~~~~~~~g~~~~~~ 126 (166)
T 3ue6_A 113 LLNYRQDGTTFWNL 126 (166)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEcCCCCEEEEE
Confidence 45788888864
No 73
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.10 E-value=5.2e-11 Score=85.74 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=60.1
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCC-HHHHHHHHhhhhcCc-------C
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQSSTDKGKHS-------N 314 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~-~~~~~~~~~~~~~~~-------~ 314 (328)
++.+++++++||++ +.+ |+|+++|++|++|+||++++++|+++..+.++... ......+...+..+. .
T Consensus 5 ~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 77899999999965 656 99999999999999999999999998877654322 334444444444332 2
Q ss_pred cccccceeeec
Q 020287 315 RASMHSTYLKL 325 (328)
Q Consensus 315 ~~~~g~~~~~~ 325 (328)
+++||+.+|..
T Consensus 81 ~~~dG~~~~~~ 91 (120)
T 3mqq_A 81 KRAGGELFWCH 91 (120)
T ss_dssp ECTTSCEEEEE
T ss_pred EeCCCCEEEEE
Confidence 56899999975
No 74
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.05 E-value=3.8e-10 Score=81.83 Aligned_cols=80 Identities=34% Similarity=0.605 Sum_probs=66.2
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------cccc
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RASM 318 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 318 (328)
++++++++|+++|...+||+|+++|++|++++||++++++|+++..+.++.........+...+..+.. ..++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 467889999999982112999999999999999999999999999998888888888888887766543 3568
Q ss_pred cceeeec
Q 020287 319 HSTYLKL 325 (328)
Q Consensus 319 g~~~~~~ 325 (328)
|..+|..
T Consensus 82 g~~~~~~ 88 (128)
T 3t50_A 82 GEAFWNR 88 (128)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 8888753
No 75
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.04 E-value=4.9e-10 Score=79.18 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=62.2
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc-------
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS------- 313 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 313 (328)
+.++.++++++++|+++|.+ |+++++|+++++++||++++++|+++.++. |+........+...+....
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeE
Confidence 34788999999999999988 999999999999999999999999998887 6666665555555554322
Q ss_pred Ccccccceeee
Q 020287 314 NRASMHSTYLK 324 (328)
Q Consensus 314 ~~~~~g~~~~~ 324 (328)
...++|..+|.
T Consensus 79 ~~~~~g~~~~~ 89 (114)
T 3luq_A 79 FVRADGRTQWL 89 (114)
T ss_dssp EEC--CCEEEE
T ss_pred EEcCCCcEEEE
Confidence 23467777764
No 76
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.01 E-value=5.5e-10 Score=95.52 Aligned_cols=81 Identities=37% Similarity=0.726 Sum_probs=69.3
Q ss_pred HHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-------ccc
Q 020287 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-------RAS 317 (328)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~ 317 (328)
.++++++++|+++|.+.+||+|+++|++|++++||+++|++|+++.++.+|+........+...+..+.. +++
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 94 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTK 94 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcC
Confidence 3678899999999992223999999999999999999999999999999888888888888888776653 468
Q ss_pred ccceeeec
Q 020287 318 MHSTYLKL 325 (328)
Q Consensus 318 ~g~~~~~~ 325 (328)
||+.+|..
T Consensus 95 dG~~~~~~ 102 (332)
T 2wkq_A 95 SGKKFWNL 102 (332)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEe
Confidence 99998864
No 77
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.00 E-value=1e-08 Score=73.12 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=76.9
Q ss_pred HHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCcc-ccCCCCChhHHHHHHHHHHcCCCeeEEEE-E
Q 020287 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (328)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (328)
..+++.++.|++++|.+ |+|+++|.+++++.|+++++++|+++.. +.+......+...+.+.+..|. +..... .
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999754 4455566667777888888666 554444 4
Q ss_pred EecCCCEEEEEEEEEEeeeCCCCeEEEEE
Q 020287 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~ 127 (328)
.+.+|.++++.++. ... ++|...+++
T Consensus 96 ~~~~~~p~~v~i~l--~~~-~~~~~~~i~ 121 (125)
T 1nwz_A 96 FDYQMTPTKVKVHM--KKA-LSGDSYWVF 121 (125)
T ss_dssp ECTTSCCEEEEEEE--EEC-SSSSEEEEE
T ss_pred EcCCCCEEEEEEEE--EEc-CCCCEEEEE
Confidence 48899966655554 444 567666544
No 78
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.99 E-value=3.4e-10 Score=97.47 Aligned_cols=116 Identities=8% Similarity=0.074 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEE
Q 020287 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (328)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (328)
..+++.++++++++++++|.+ |+++++|+++++++||++++++|++...+..+ ..........+..+.+.....
T Consensus 7 ~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 80 (349)
T 3a0r_A 7 RNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFLNF 80 (349)
T ss_dssp --CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEEEC
T ss_pred HHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceeecc
Confidence 345677999999999999999 99999999999999999999999987766322 223334445555555443321
Q ss_pred EEEecCCCEEEEEEEEEEeeeCCCCeE-EEEEEEEecccccccccccc
Q 020287 97 LNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (328)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~-~~~~~~~~DIte~k~~e~~~ 143 (328)
..+...|+.+...|+.+ ..+.. .+++++++|||++++++++.
T Consensus 81 ----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 81 ----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp ----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred ----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 22233577888999987 56654 58899999999999985443
No 79
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.99 E-value=1.1e-08 Score=69.26 Aligned_cols=95 Identities=8% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEE
Q 020287 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (328)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (328)
++++++++|.+ |+++++|+++++++|++.++++|++...+ + ........+.+.+..+...... .. ++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL-P--DFEEIGSVAESVFENKEPVFLN--FY--KFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS-T--TCHHHHHHHHHHHHHTCCEEEE--EE--EETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC-c--chHHHHHHHHHHhccCCeEEEE--EE--cCCcE
Confidence 46799999999 99999999999999999999999987766 2 2233444555566656554322 22 34446
Q ss_pred EEEEEEEEeeeCCCCe-EEEEEEEEec
Q 020287 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (328)
Q Consensus 107 ~~~~~~~~~~~~~~g~-~~~~~~~~~D 132 (328)
|+.++..|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88999999987 5554 6788888776
No 80
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.98 E-value=4.1e-10 Score=80.22 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhh---cCcCccccc
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKG---KHSNRASMH 319 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~g 319 (328)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++.. ...+..+...-. +...++++|
T Consensus 15 ~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~g 90 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFA-LHDWEEIRQKNNYTFKTRYRSQSG 90 (118)
T ss_dssp HHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGG-GSCHHHHHHHSEEEEEEEEECTTC
T ss_pred HHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccC-HHHHHHHHhcCcEEEEEEEEccCC
Confidence 566899999999999988 9999999999999999999999999988774332 222333322110 112346789
Q ss_pred ceeeec
Q 020287 320 STYLKL 325 (328)
Q Consensus 320 ~~~~~~ 325 (328)
+.+|..
T Consensus 91 ~~~~~~ 96 (118)
T 3olo_A 91 RIFLVE 96 (118)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 888754
No 81
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.97 E-value=1.5e-08 Score=72.39 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=76.2
Q ss_pred HHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCcc-ccCCCCChhHHHHHHHHHHcCCCeeEEEE-E
Q 020287 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (328)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (328)
..+++.++.|++++|.+ |+|+++|.+++++.|+++++++|+++.. +.+......+...+.+.+..|. +..... .
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999999 9999999999999999999999999754 4455566667778888888666 554444 4
Q ss_pred EecCCCEEEEEEEEEEeeeCCCCeEEEEE
Q 020287 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (328)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~ 127 (328)
.+.+|.++++.+++ ... +++...+++
T Consensus 101 ~~~~~~p~~v~i~l--~~~-~~~~~~~i~ 126 (129)
T 1mzu_A 101 FDFQMAPVRVQIRM--QNA-GVPDRYWIF 126 (129)
T ss_dssp EECSSCEEEEEEEE--EEC-SSTTEEEEE
T ss_pred EcCCCCEEEEEEEE--EEc-CCCCEEEEE
Confidence 48889866655554 444 566665543
No 82
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.97 E-value=7e-10 Score=78.93 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=72.2
Q ss_pred cCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHH-HHc-CCCe---eEEEEEEe
Q 020287 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA-IRE-ERPI---EVNLLNYK 100 (328)
Q Consensus 26 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~---~~e~~~~~ 100 (328)
..+++++++|.+ +|+|+++|+++++++||++++++|++...+.++..... ...+... ... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 345799999973 28999999999999999999999999887776653322 2222211 111 1111 23456678
Q ss_pred cCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
++|..+|+.+++.|+.+ ..+ .++++++.|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999976 333 25677888875
No 83
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.96 E-value=2.4e-10 Score=81.39 Aligned_cols=104 Identities=9% Similarity=0.092 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCC---ChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (328)
...+.++.++++++++++++|.+ |+++++|+++++++|+ +.++++|++...+.++. .+.+.+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVV-------DVSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTH-------HHHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCch-------hHHHHhccCce
Confidence 45567889999999999999999 9999999999999997 78899999876665432 13444555544
Q ss_pred eeEEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
..... ...+| .|+.+...|+.+ +|.+.+++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32211 12345 467778888875 677778889999997
No 84
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.94 E-value=2.1e-09 Score=84.01 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCC-C-e
Q 020287 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (328)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (328)
+....++.+++++++|++++|.+ |+++++|+++++++|++.++++|++...+.++.. + ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~---~----~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN---F----LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC---H----HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC---H----HHHHhcCCCCCc
Confidence 34467899999999999999999 9999999999999999999999998777765432 1 22333333 2 2
Q ss_pred eEEEEEEecCCCEEEEEEEEEEeeeCCCCe----EEEEEEEEeccccccc
Q 020287 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (328)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~----~~~~~~~~~DIte~k~ 138 (328)
..+.. .+|. ++.+.+.|+.+ ++|. +.|++.+++|||++++
T Consensus 147 ~~~~~---~~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVV---INGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEE---ETTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEE---ECCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 22322 2664 45677888875 4555 6788888899998864
No 85
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.94 E-value=6.2e-09 Score=88.45 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=90.0
Q ss_pred CcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC-----eeEEEEEEecC
Q 020287 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (328)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (328)
...+...+.+ |.++|+|+++..++||++++++|++...+.++++.......+.+.+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567778888 999999999999999999999999988888888777666777777776654 35678999999
Q ss_pred CCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccc
Q 020287 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~ 138 (328)
|..+|+.....++.++..+.+.+++++.+.++....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999987335677788888888887654
No 86
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.94 E-value=1.6e-09 Score=80.88 Aligned_cols=79 Identities=30% Similarity=0.585 Sum_probs=62.0
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCC-----------CHHHHHHHHhhhhcCcC
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQSSTDKGKHSN 314 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~ 314 (328)
++++ +++|+++|...++|+|+++|+++++++||+++|++|+++..+.+++. .......+...+..+..
T Consensus 31 ~~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 4555 48999998422339999999999999999999999999988887764 67777777777665543
Q ss_pred -------cccccceeeec
Q 020287 315 -------RASMHSTYLKL 325 (328)
Q Consensus 315 -------~~~~g~~~~~~ 325 (328)
++++|+.+|..
T Consensus 110 ~~~e~~~~~~dG~~~~~~ 127 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNF 127 (149)
T ss_dssp EEEEEEEECTTCCEEEEE
T ss_pred eEEEEEEECCCCCEEEEE
Confidence 46799988864
No 87
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.93 E-value=4.2e-10 Score=84.44 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=57.7
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (328)
+..+++++++||+++|.+ |+|++||+++++++|++++|++|+++.++.++ ........++.++..+.
T Consensus 24 l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~ 90 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIES 90 (152)
T ss_dssp HHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCC
Confidence 577899999999999999 99999999999999999999999999988866 54555666777777554
No 88
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.91 E-value=2.8e-09 Score=79.15 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=68.9
Q ss_pred hhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCccccccc--CcccccCCCCCHHHHHHHHhhhhcCcC---
Q 020287 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQSSTDKGKHSN--- 314 (328)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~--~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 314 (328)
++.+..++++++.|++.+|.. +.++++|+++++++||+++++.+. .+..++||++.+.+...+..++..+.+
T Consensus 8 e~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~ 84 (142)
T 3mr0_A 8 EERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV 84 (142)
T ss_dssp -CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEE
Confidence 455888999999999999998 899999999999999999998874 456788999988888888888776543
Q ss_pred ----cccccceeeecc
Q 020287 315 ----RASMHSTYLKLQ 326 (328)
Q Consensus 315 ----~~~~g~~~~~~~ 326 (328)
++++|+.+|...
T Consensus 85 e~r~~~~~G~~~w~~~ 100 (142)
T 3mr0_A 85 EYRVRTRSGDFRWIQS 100 (142)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 367999999764
No 89
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.90 E-value=4.8e-09 Score=75.20 Aligned_cols=82 Identities=37% Similarity=0.664 Sum_probs=67.5
Q ss_pred hhHHHHHhhccCceEEeC---CCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC---
Q 020287 241 SSLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN--- 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d---~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 314 (328)
..+..++++++++++++| .+ |.++++|+++++++||+.++++|+++..+.++.........+...+..+..
T Consensus 6 ~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 6 QELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp -CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 447889999999999999 67 999999999999999999999999999888888877777777777665542
Q ss_pred ----cccccceeeec
Q 020287 315 ----RASMHSTYLKL 325 (328)
Q Consensus 315 ----~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 83 ~~~~~~~~g~~~~~~ 97 (130)
T 2z6d_A 83 RLLNYKKDGTPFWNL 97 (130)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEE
Confidence 34577776653
No 90
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.88 E-value=7.8e-10 Score=78.75 Aligned_cols=83 Identities=7% Similarity=-0.123 Sum_probs=69.5
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCc--ccccCCCCCHHHHHHHHhhhhcCcC----
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQSSTDKGKHSN---- 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~--~~l~~~~~~~~~~~~~~~~~~~~~~---- 314 (328)
+.++.++++++++|+.+|.+ +.++++|+++++++||++++++|+.. ..+++|++.......+...+..+.+
T Consensus 4 ~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 4 EELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 45788999999999999998 99999999999999999999998754 5678899888888888777665543
Q ss_pred ---cccccceeeecc
Q 020287 315 ---RASMHSTYLKLQ 326 (328)
Q Consensus 315 ---~~~~g~~~~~~~ 326 (328)
.+++|..+|...
T Consensus 81 ~r~~~~~g~~~w~~~ 95 (118)
T 3icy_A 81 YRIVTPEGKLHWIED 95 (118)
T ss_dssp EEEECTTCCEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 357898888653
No 91
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.88 E-value=2.4e-09 Score=76.10 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=52.8
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhh-hhc-Cc----------Cccc
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTD-KGK-HS----------NRAS 317 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~-~~~-~~----------~~~~ 317 (328)
.+++|+++|.+ +|+|+++|+++++++||+++|++|+++..+.++.... ....+... +.. +. .+++
T Consensus 7 ~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSD-VVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTH-HHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhH-HHHHHHHHhhccCCcceeccCcEEEEEec
Confidence 45799999863 2899999999999999999999999999988776533 33333332 111 11 1467
Q ss_pred ccceeeec
Q 020287 318 MHSTYLKL 325 (328)
Q Consensus 318 ~g~~~~~~ 325 (328)
||+.+|..
T Consensus 84 dG~~~~v~ 91 (114)
T 1ll8_A 84 SGEKIPVS 91 (114)
T ss_dssp TCCCEEEE
T ss_pred CCCEEEEE
Confidence 89988864
No 92
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.88 E-value=1.7e-09 Score=77.61 Aligned_cols=82 Identities=10% Similarity=-0.127 Sum_probs=60.8
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccc--cCcccccCCCCCHHHHHHHHhhhhcCcC----
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQSSTDKGKHSN---- 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG--~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 314 (328)
+.+..++++++.+++++|.+ +.++++|+++++++||++++++| ..+..+.+|++.......+...+..+.+
T Consensus 7 ~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e 83 (125)
T 3nja_A 7 KLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVE 83 (125)
T ss_dssp ----------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEE
Confidence 44777899999999999999 99999999999999999999999 5566778898888888888777766543
Q ss_pred ---cccccceeeec
Q 020287 315 ---RASMHSTYLKL 325 (328)
Q Consensus 315 ---~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 84 ~~~~~~~g~~~~~~ 97 (125)
T 3nja_A 84 YRIVRPDGQVRELL 97 (125)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 35688888864
No 93
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.88 E-value=4.2e-09 Score=74.88 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=65.8
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC------
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN------ 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~------ 314 (328)
..+..++++++++++++|.+ |.++++|+++++++||+.++++|+++..+.++.........+...+..+.+
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 34778999999999999998 999999999999999999999999988776666656566667666665543
Q ss_pred -cccccceeeec
Q 020287 315 -RASMHSTYLKL 325 (328)
Q Consensus 315 -~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 84 ~~~~~g~~~~~~ 95 (124)
T 3lyx_A 84 MLHKDGHIGWIE 95 (124)
T ss_dssp EECTTSCEEEEE
T ss_pred EEccCCCEEEEE
Confidence 34677777653
No 94
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.87 E-value=8.5e-10 Score=79.17 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=57.7
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (328)
.+.+++++++||+++|.+ |+|+++|+++++++||++++++|+++.++.++.........+.+++..+.
T Consensus 14 ~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred HHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 445889999999999998 99999999999999999999999999888866666666667777766554
No 95
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.87 E-value=1.2e-09 Score=78.60 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=63.0
Q ss_pred HHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC------cccc
Q 020287 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN------RASM 318 (328)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~ 318 (328)
.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++.+.......+...+..+.. ..++
T Consensus 3 ~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T 3mjq_A 3 NFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKE 79 (126)
T ss_dssp TTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCSEEEEEEECTT
T ss_pred hHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCceeEEEEEccC
Confidence 4688899999999998 999999999999999999999999998888777766666666665544332 3567
Q ss_pred cceeeec
Q 020287 319 HSTYLKL 325 (328)
Q Consensus 319 g~~~~~~ 325 (328)
|..+|..
T Consensus 80 g~~~~~~ 86 (126)
T 3mjq_A 80 GTSIPAK 86 (126)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 8777753
No 96
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.83 E-value=6.6e-09 Score=76.28 Aligned_cols=80 Identities=36% Similarity=0.719 Sum_probs=67.2
Q ss_pred HHHHHhhccCceEEeCC---CCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC-----
Q 020287 243 LYISLGRIKQSFVLIDP---HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN----- 314 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~---~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 314 (328)
+..++++++++|+++|. + +.++++|+++++++||++++++|+++..+.++.........+...+..+.+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 45578899999999998 7 999999999999999999999999999998888888888888777765543
Q ss_pred --cccccceeeec
Q 020287 315 --RASMHSTYLKL 325 (328)
Q Consensus 315 --~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 81 ~~~~~~g~~~~~~ 93 (146)
T 2v0u_A 81 INYTKSGKKFWNL 93 (146)
T ss_dssp EEECTTCCEEEEE
T ss_pred EEEecCCcEEEEE
Confidence 35677776653
No 97
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.82 E-value=1.3e-09 Score=78.49 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=41.7
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCccccc
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~ 293 (328)
..+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.
T Consensus 19 ~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 68 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVM 68 (125)
T ss_dssp -------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSS
T ss_pred HHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhC
Confidence 34778999999999999999 999999999999999999999999998887
No 98
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.81 E-value=3.2e-09 Score=75.65 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=55.1
Q ss_pred HHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccC-CCCCHHHHHHHHhhhhcC
Q 020287 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-VDTDTTVLYQSSTDKGKH 312 (328)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~-~~~~~~~~~~~~~~~~~~ 312 (328)
..++++++.|++++|.+ |+|++||+++++++||++++++|+++..... ....+.+...+.+.+.++
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g 86 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASG 86 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHT
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcC
Confidence 34689999999999999 9999999999999999999999999976443 356677777777766644
No 99
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.80 E-value=6.7e-09 Score=78.50 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=69.4
Q ss_pred hhHHHHHhhccCceEEeCCCCCCC---CEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC---
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN--- 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg---~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 314 (328)
..+..++++++++|+++|.+ | +|+++|+++++++||+.++++|+++..+.++.........+...+..+..
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCRE 101 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcc
Confidence 45788999999999999998 8 99999999999999999999999999888888777777777777765543
Q ss_pred ----cccccceeeec
Q 020287 315 ----RASMHSTYLKL 325 (328)
Q Consensus 315 ----~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 102 ~~~~~~~~g~~~~~~ 116 (162)
T 3sw1_A 102 VLRNYRKDGSAFWNE 116 (162)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred eEEEECCCCCEEEEE
Confidence 35688887753
No 100
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.79 E-value=8.4e-08 Score=80.65 Aligned_cols=106 Identities=8% Similarity=0.037 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC---eeEEEEEEecCCCE
Q 020287 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (328)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dg~~ 105 (328)
.-+...+.+ |.++|+|+++..++||.++|++|++...+.++++...+...+.+.+..+.. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345667777 999999999999999999999999988888888887777777777776554 34678999999999
Q ss_pred EEEEEEEEEeeeCCCCeEEEEEEEEecccccc
Q 020287 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (328)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k 137 (328)
+|+.....++.++.++++.++++...-++...
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~ 283 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPL 283 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCC
Confidence 99999999888723567777777777666554
No 101
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.79 E-value=3.7e-09 Score=75.45 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=55.2
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccC-CCCCHHHHHHHHhhhhcCc
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-VDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 313 (328)
++++++.||+++|.+ |+|++||+++++++||++++++|+++...+. ....+.+...+.+.+.++.
T Consensus 27 ~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~ 92 (129)
T 1mzu_A 27 EFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT 92 (129)
T ss_dssp TGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC
T ss_pred HHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc
Confidence 689999999999999 9999999999999999999999999976443 3566777777877766543
No 102
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.78 E-value=1.7e-08 Score=70.02 Aligned_cols=74 Identities=26% Similarity=0.455 Sum_probs=57.1
Q ss_pred CceEEeCCCCCCCCEEEechhhHHhhCCCcccccccC--cccccCCCCCHHHHHHHHhhhhcCcC-------ccccccee
Q 020287 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSN-------RASMHSTY 322 (328)
Q Consensus 252 ~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~ 322 (328)
.+|+++|...+||+|+++|+++++++||++++++|++ ...+.++.........+...+..+.. ..++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5889999866679999999999999999999999998 45566666666666777776654432 35688877
Q ss_pred eec
Q 020287 323 LKL 325 (328)
Q Consensus 323 ~~~ 325 (328)
|..
T Consensus 82 ~~~ 84 (110)
T 1byw_A 82 LCL 84 (110)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 103
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.76 E-value=2.4e-08 Score=72.50 Aligned_cols=83 Identities=23% Similarity=0.411 Sum_probs=63.6
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccC--cccccCCCCCHHHHHHHHhhhhcCcC------
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSN------ 314 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~------ 314 (328)
+...+++++++|+++|...++|+|+++|+++++++||+.++++|++ +..+.++.........+...+..+..
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 4556677999999999821129999999999999999999999998 56677777777767777777665432
Q ss_pred -cccccceeeec
Q 020287 315 -RASMHSTYLKL 325 (328)
Q Consensus 315 -~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 101 ~~~~~g~~~~~~ 112 (138)
T 2l0w_A 101 FYRKDGSCFLCL 112 (138)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCCEEEEE
Confidence 35678777643
No 104
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.68 E-value=2.1e-07 Score=78.02 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCC-ee-EEEEEEecCCCEEE
Q 020287 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (328)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dg~~~~ 107 (328)
-+...+.+ |.++|+|+++..++||.++|++|++...+.++++...+...+.+.+..+.. .. .++++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45667777 999999999999999999999999988888888776666666777765443 44 58899999999999
Q ss_pred EEEEEEEeeeCCCCeEEEEEEEEecccccc
Q 020287 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (328)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DIte~k 137 (328)
+.....++.++.++++.++++...-++...
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~ 273 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPL 273 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCC
Confidence 999988887623678888888888777654
No 105
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.67 E-value=1.3e-08 Score=76.59 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=57.8
Q ss_pred hhHHHHHhhccCceEEeC-CCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCcC
Q 020287 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN 314 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d-~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (328)
+.+..+++++|++|+++| .+ |+|+++|+++++++||+ +++|+++.++.++.........+..++..+.+
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEP 86 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCc
Confidence 348889999999999999 88 99999999999999999 99999998888766655566677777755544
No 106
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.2e-08 Score=72.41 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=45.2
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCC
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (328)
...+++++++||+++|.+ |+|+++|+++++++||++++++|+++..+.++
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~ 58 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQH 58 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCc
Confidence 345899999999999999 99999999999999999999999998877643
No 107
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.65 E-value=8.8e-09 Score=73.17 Aligned_cols=75 Identities=9% Similarity=-0.065 Sum_probs=59.6
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccC-cccccCCCCCHHHHHHHHhhhhcCcC-------cccccce
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQSSTDKGKHSN-------RASMHST 321 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~-~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~ 321 (328)
++++++.+|.. +++++|+|+++++++||++++++|.. +..++||++.+.+...+..++..+.+ +++||+.
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 46889999943 28899999999999999999999942 35678899888888888888776643 4689999
Q ss_pred eeecc
Q 020287 322 YLKLQ 326 (328)
Q Consensus 322 ~~~~~ 326 (328)
+|...
T Consensus 80 ~w~~~ 84 (115)
T 3h9w_A 80 VWIRD 84 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98754
No 108
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.64 E-value=1.5e-07 Score=79.28 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHc-CCCe-eEEEEEEecCCCEE
Q 020287 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE-ERPI-EVNLLNYKKDGTPF 106 (328)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~~dg~~~ 106 (328)
.-+...+.+ |.++|+|+++..++||.++|++|++...+.++++...+...+.+.+.. +... ..+++++++||..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345667777 999999999999999999999999988888887766666666666664 3344 35889999999999
Q ss_pred EEEEEEEEeeeCCCCeEEEEEEEEeccccccc
Q 020287 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~ 138 (328)
|+.....++.++.++++.++++...-++....
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 99999888876336788888888888877643
No 109
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.64 E-value=5.7e-08 Score=73.44 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=61.4
Q ss_pred hHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc--------
Q 020287 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS-------- 313 (328)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 313 (328)
.+..++++++++|+++|.+ |.++++|+++++++||+.++++|+++..+.++.........+......+.
T Consensus 41 ~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 117 (167)
T ss_dssp CHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccce
Confidence 3778999999999999988 99999999999999999999999999888776654444444444433321
Q ss_pred ---Ccccccceeeec
Q 020287 314 ---NRASMHSTYLKL 325 (328)
Q Consensus 314 ---~~~~~g~~~~~~ 325 (328)
...++|..+|..
T Consensus 118 ~~~~~~~~g~~~~~~ 132 (167)
T 1v9y_A 118 ELQLEKKDGSKIWTR 132 (167)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEE
Confidence 234677777653
No 110
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.63 E-value=3.1e-08 Score=71.18 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=46.1
Q ss_pred hHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhC------------CCcccccccCcccccC
Q 020287 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNG 294 (328)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~G------------y~~~e~iG~~~~~l~~ 294 (328)
++..+++++++||+++|.+ |+|+++|+++++++| |++++++|+++..+..
T Consensus 6 rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 6 RIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp HHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred HHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 4788999999999999999 999999999999995 9999999999988763
No 111
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.60 E-value=2.8e-08 Score=77.25 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=56.2
Q ss_pred hhHHHHHhhccCceEEeC-CCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc
Q 020287 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d-~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (328)
+.+..+++++|++|+++| .+ |+|+++|++|++++||+ +++|+++.++.++.........+..++..+.
T Consensus 37 ~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~ 105 (185)
T 3kx0_X 37 EDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGE 105 (185)
T ss_dssp HHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCC
Confidence 347889999999999999 88 99999999999999999 9999999888876655445556666665444
No 112
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.56 E-value=3.6e-08 Score=70.17 Aligned_cols=83 Identities=4% Similarity=-0.132 Sum_probs=62.1
Q ss_pred hhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccC--cccccCCCCCHHHHHHHHhhhhcCcC---
Q 020287 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSN--- 314 (328)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~--- 314 (328)
.+.+..++++++++++++|.+ +|.++++|+++++++||++++++|++ +..+.+|++.......+.. +..+.+
T Consensus 10 ~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (125)
T 3eeh_A 10 ERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESADV 86 (125)
T ss_dssp CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCccE
Confidence 455888999999999999865 27999999999999999999999987 4566666665555555554 333322
Q ss_pred ----cccccceeeec
Q 020287 315 ----RASMHSTYLKL 325 (328)
Q Consensus 315 ----~~~~g~~~~~~ 325 (328)
..++|..+|..
T Consensus 87 e~~~~~~~g~~~~~~ 101 (125)
T 3eeh_A 87 ECRVNATEEYQRWVW 101 (125)
T ss_dssp EEEECGGGTTCEEEE
T ss_pred EEEEEcCCCCEEEEE
Confidence 35678777754
No 113
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.49 E-value=2.1e-07 Score=86.21 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=65.6
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc-------Cc
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS-------NR 315 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~ 315 (328)
+...+++++++|+++|.+ |+|+|+|++|++++||+++|++|++...+.++++.. ....+.+.+..+. .+
T Consensus 520 ~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~~ 595 (635)
T 4eho_A 520 ASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLLR 595 (635)
T ss_dssp HHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEEC
T ss_pred HHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEEE
Confidence 456788999999999999 999999999999999999999999887777776654 4556666666554 35
Q ss_pred ccccceeeecc
Q 020287 316 ASMHSTYLKLQ 326 (328)
Q Consensus 316 ~~~g~~~~~~~ 326 (328)
++||+.||...
T Consensus 596 ~~dG~~~~~~~ 606 (635)
T 4eho_A 596 GAGNRPLPLAV 606 (635)
T ss_dssp CSSSSCEECCC
T ss_pred ccCCcEEEEEE
Confidence 78999999754
No 114
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.46 E-value=2.8e-07 Score=74.41 Aligned_cols=63 Identities=10% Similarity=0.285 Sum_probs=51.8
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhh------------CCCcccccccCcccccCCCCCHHHHHHHHhh
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQSSTD 308 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~------------Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~ 308 (328)
..+..++++++++|+++|++ |+|+|+|++|++++ ||++++++|+++..+.. .+.....+...
T Consensus 22 ~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~---~~~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK---NPAHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS---SHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC---CHHHHHHHHHh
Confidence 34778999999999999999 99999999999998 89999999999988864 23444444444
Q ss_pred h
Q 020287 309 K 309 (328)
Q Consensus 309 ~ 309 (328)
+
T Consensus 96 ~ 96 (233)
T 3vol_A 96 L 96 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 115
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.43 E-value=3e-07 Score=61.85 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred ccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcC
Q 020287 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKH 312 (328)
Q Consensus 250 ~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (328)
++++|+++|.+ |+|+++|+++++++||++++++|+++..+ +. .......+...+..+
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~ 57 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENK 57 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHT
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccC
Confidence 36899999998 99999999999999999999999999887 32 234444455554433
No 116
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.38 E-value=2.5e-07 Score=65.30 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=46.6
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCC---CcccccccCcccccCC
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGV 295 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy---~~~e~iG~~~~~l~~~ 295 (328)
..+..++++++++|+++|.+ |+|+++|+++++++|| ++++++|+++..+.++
T Consensus 15 ~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 69 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV 69 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCT
T ss_pred HHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCc
Confidence 34677999999999999998 9999999999999998 8999999998887644
No 117
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.73 E-value=4.3e-08 Score=82.37 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=76.1
Q ss_pred HHhcCCcEEEEEcCCCCCCCEEEechHHHHhhC---CChhhhcCCCCccccCCC---CCh--hHHHHHHHHHHc-CCCee
Q 020287 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (328)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (328)
+++++++|++++|.+ |+|+++|++++++|+ ++ ++++|++...+.+.. ... .+...+..++.. +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 356899999999999 999999999999985 44 678999877665432 100 111222223333 22222
Q ss_pred EEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccccccccccccc
Q 020287 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSY 146 (328)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~~e~~~~~~ 146 (328)
.+.. .. ..++.++..|+.+ +|.+.|++.+++|||+.++.++++..+
T Consensus 251 ~ei~---~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~~K 296 (305)
T 2ykf_A 251 MEVD---AG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALISK 296 (305)
Confidence 2221 12 2466778889876 678889999999999999996666443
No 118
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.34 E-value=3.1e-07 Score=68.73 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=53.0
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechh---hHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a---~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (328)
..+..++++++++|+++|.+ |+|+|+|++ +++++| ..++++|+++.++.. .........+.++++.+.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~ 89 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQ 89 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCC
Confidence 44788999999999999999 999999999 999999 667899999988753 222333445555555444
No 119
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.30 E-value=7.7e-07 Score=69.27 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=48.1
Q ss_pred hhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCC
Q 020287 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (328)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (328)
..+..+++++++||+++|.+ |+|+++|+++++++|++.++++|+++..+.++.
T Consensus 80 ~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~ 132 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 (190)
T ss_dssp HHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTC
T ss_pred HHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCC
Confidence 34778999999999999999 999999999999999999999999998887554
No 120
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.28 E-value=2.2e-07 Score=79.75 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccC
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~ 294 (328)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.+
T Consensus 10 ~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~ 58 (349)
T 3a0r_A 10 SESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPD 58 (349)
T ss_dssp CCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTT
T ss_pred HHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcC
Confidence 556899999999999998 9999999999999999999999999988843
No 121
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.54 E-value=1.5e-07 Score=79.12 Aligned_cols=46 Identities=24% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHhhccCceEEeCCCCCCCCEEEechhhHHhhC---CCcccccccCcccccCC
Q 020287 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGV 295 (328)
Q Consensus 246 ~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~G---y~~~e~iG~~~~~l~~~ 295 (328)
.++++++||+++|.+ |+|+++|+++++++| ++ ++++|+++..+..+
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRP 223 (305)
Confidence 677889999999999 999999999999984 55 78999998877643
No 122
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.83 E-value=1.6e-05 Score=68.74 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=54.8
Q ss_pred chhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhcCc
Q 020287 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS 313 (328)
Q Consensus 239 ~~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (328)
....+..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..+.++ ........+...+..+.
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~-~~~~~~~~l~~~l~~g~ 305 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPP-KSVYVVNKILKAFKEGR 305 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCG-GGHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCCh-hhHHHHHHHHHHHHcCC
Confidence 3356888999999999999999 999999999 9999 99999999999887643 33344445555555443
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.41 E-value=0.00035 Score=49.51 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCCh--hhhcCCCCccccCCCCCh--hHHHHHHHHHHcCCCeeEEEEEEecCCCEE
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (328)
+.-.|.+ |+++++..+..+ .++.+ +|++|+.+.++.++.+.. .+...+.+++..|......++++.++|..+
T Consensus 10 ~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 4456777 999999998874 67777 899999988888888754 666777788887777777888999999999
Q ss_pred EEEEEEEEeeeCCCCeEEEEEEEEecccc
Q 020287 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (328)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIte 135 (328)
|+....+.++++..+++.+++++-.=+.+
T Consensus 86 ~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 86 SAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 99988888776223455555555444433
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.73 E-value=0.00099 Score=47.24 Aligned_cols=68 Identities=4% Similarity=-0.132 Sum_probs=52.4
Q ss_pred eEEeCCCCCCCCEEEechhhHHhhCCCc--ccccccCcccccCCCCCH--HHHHHHHhhhhcCcC-------ccccccee
Q 020287 254 FVLIDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQSSTDKGKHSN-------RASMHSTY 322 (328)
Q Consensus 254 i~i~d~~~~dg~i~~~N~a~~~~~Gy~~--~e~iG~~~~~l~~~~~~~--~~~~~~~~~~~~~~~-------~~~~g~~~ 322 (328)
+.-.|.+ |+|+++..+.. ..+|.+ +|++|+++.++.|+++.. ...+...+++.++.. +.|+|..-
T Consensus 10 ~sRh~~d---GKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDTT---GKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECTT---CCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecCC---CcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 3445666 99999999987 477888 999999999999999965 777777777776542 35788766
Q ss_pred eec
Q 020287 323 LKL 325 (328)
Q Consensus 323 ~~~ 325 (328)
|..
T Consensus 86 ~~q 88 (132)
T 1oj5_A 86 SAH 88 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=93.92 E-value=0.038 Score=46.54 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=40.0
Q ss_pred CceEE-eCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhhc
Q 020287 252 QSFVL-IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGK 311 (328)
Q Consensus 252 ~~i~i-~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (328)
-|+.+ ++. .+++|+.+|..+++++|+++++++|+++..+.+++. ...++..+..
T Consensus 42 ~G~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~----~~~l~~~l~~ 96 (337)
T 2ool_A 42 HGYLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS----AARLTHALHG 96 (337)
T ss_dssp TSEEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH----HHHHHHHHCC
T ss_pred CEEEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHH----HHHHHHHHhc
Confidence 45543 443 248999999999999999999999999999886533 4445555443
No 126
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=90.52 E-value=0.59 Score=31.02 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhC
Q 020287 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (328)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~G 278 (328)
.+.+..++|..+++-+.. ..|+|+|.+|.+|+-
T Consensus 22 iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~ 54 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFS 54 (127)
T ss_dssp HHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTT
T ss_pred HHhhhcCCCccEEEeccc---ceEEEecchHHHHhh
Confidence 556788999999999998 899999999999953
No 127
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=87.57 E-value=0.77 Score=38.60 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred EEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCC
Q 020287 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (328)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~ 72 (328)
++++.. +++|+.+|..+.+++|+++++++|++...++++
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 84 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTA 84 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCH
Confidence 345542 489999999999999999999999988777654
No 128
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=86.99 E-value=8.7 Score=29.43 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCc--EEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEE
Q 020287 18 LWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (328)
Q Consensus 18 ~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (328)
..+..+....+. .+++.|.+ |.++..+.. ...+.. .... ..+.+++..+...-.+
T Consensus 58 ~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~r----~~f~~a~~~~~~~is~ 114 (217)
T 4dah_A 58 SILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LADR----SFFIKAKETKKTVISD 114 (217)
T ss_dssp HHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTTS----HHHHHHHHHCSCEECC
T ss_pred HHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cchh----HHHHHHHhcCCcEEec
Confidence 345555555443 68889999 988775430 001111 1111 2344455555554333
Q ss_pred EEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEecccccc
Q 020287 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (328)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~k 137 (328)
...-...|. ++.....|+.+ .+|++.|+++...++....
T Consensus 115 ~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~ 153 (217)
T 4dah_A 115 SYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLK 153 (217)
T ss_dssp CEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHH
T ss_pred eEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHH
Confidence 333233555 45556789987 7899999988877766443
No 129
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=73.78 E-value=1.6 Score=36.64 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=34.3
Q ss_pred Cce-EEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCC
Q 020287 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (328)
Q Consensus 252 ~~i-~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (328)
-|+ +.+|.. |++|+.++....+++|.++++++|+++..+.++
T Consensus 52 hG~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 52 HGALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp TSEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 344 345542 489999999999999999999999999888865
No 130
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=70.46 E-value=1.5 Score=36.57 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=39.3
Q ss_pred Cce-EEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCCCCHHHHHHHHhhhh
Q 020287 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKG 310 (328)
Q Consensus 252 ~~i-~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~ 310 (328)
-|+ +.+|. |++|+.++....+++|.++++++|+++..+.+ ......++.++.
T Consensus 29 hG~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~----~~~~~~l~~~l~ 81 (327)
T 4e04_A 29 HGLLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFD----SETHNRLTIALA 81 (327)
T ss_dssp TSEEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBC----HHHHHHHHHHHH
T ss_pred CeEEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcC----HHHHHHHHHHhh
Confidence 344 44554 49999999999999999999999999988874 344445555543
No 131
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=70.39 E-value=21 Score=23.76 Aligned_cols=92 Identities=10% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHH-HHHHHcCCCeeEEE
Q 020287 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI-REAIREERPIEVNL 96 (328)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~e~ 96 (328)
--.+.+...+|.++.+-+.+ ..++|.|.+|.++|--....+-|.+.... ....+...+ .++..-|....+ .
T Consensus 20 L~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked~~~sg~S~~~~----~vE~~LS~LELeCqsLGhG~af-~ 91 (127)
T 4ew7_A 20 LSIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKEDQPLSGDSYNRY----GVEVFLSSLELECQSLGHGAAF-C 91 (127)
T ss_dssp HHHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCCCGGGCTTSSHH----HHHHHHHHHHHHHHHHCTTCEE-E
T ss_pred HhHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcccCcccCccccee----eehhhHHHHHHHHHhhcCCceE-E
Confidence 34677899999999999999 99999999999997443333323221110 001112222 133333333222 3
Q ss_pred EEEecCCCEEEEEEEEEEeee
Q 020287 97 LNYKKDGTPFWMLFKMSLVFG 117 (328)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~ 117 (328)
+...-.|+.+.+.+......+
T Consensus 92 r~Fn~~~e~yQIRmE~iSf~~ 112 (127)
T 4ew7_A 92 RRFNFHGEIYQIRMENISFDN 112 (127)
T ss_dssp EEEEETTEEEEEEEEEEECTT
T ss_pred EEeecCCceEEEEEEEeeecC
Confidence 344557777776666555543
No 132
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=67.05 E-value=43 Score=26.09 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCc--EEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHH--cCCCee
Q 020287 18 LWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERPIE 93 (328)
Q Consensus 18 ~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 93 (328)
..+..+....+. .+++.|.+ |. +..+.. .. ..+.. ..+. ..+..++. .+..+.
T Consensus 58 ~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~r----~~f~~a~~~~~~~~~i 114 (254)
T 3lif_A 58 ERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSDR----SYFRYHRANDDHTLLI 114 (254)
T ss_dssp HHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTTS----HHHHHHHHCCCCCCEE
T ss_pred HHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------cccH----HHHHHHHhCCCCCeEE
Confidence 445555555554 68899999 88 443321 00 01111 1111 23444554 344444
Q ss_pred EEEEEEecCCCEEEEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
.+...-...|. |+.....|+.+ .+|++.|++++..++...
T Consensus 115 s~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l 154 (254)
T 3lif_A 115 TGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYF 154 (254)
T ss_dssp EEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHH
T ss_pred CCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHH
Confidence 33333223454 55566789987 789999988877776433
No 133
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=62.17 E-value=58 Score=27.04 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcC
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (328)
++++|.+ ++|+.++.....++|.++++++|++...+.++ .....+...+...
T Consensus 32 Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~----~~~~~l~~~l~~~ 83 (327)
T 4e04_A 32 LLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDS----ETHNRLTIALAEP 83 (327)
T ss_dssp EEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH----HHHHHHHHHHHSC
T ss_pred EEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCH----HHHHHHHHHhhcc
Confidence 4566655 99999999999999999999999987766532 3344455555443
No 134
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=58.25 E-value=3 Score=37.30 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=34.1
Q ss_pred Cce-EEeCCCCCCCCEEEechhhHHhhCCCcccccccCcccccCCC
Q 020287 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (328)
Q Consensus 252 ~~i-~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (328)
-|+ +.+|.. |++|+.++....+++|.++++++|+++..+.++.
T Consensus 29 hG~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 29 HGLVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp TSEEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 344 345542 4899999999999999999999999988776543
No 135
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=37.69 E-value=20 Score=29.99 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCC
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~ 72 (328)
+++++.. +++|+.++.....++|.++++++|++...+...
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 4556652 389999999999999999999999987777654
No 136
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=34.65 E-value=44 Score=27.28 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=31.7
Q ss_pred chhhHHHHHhhccCceEEeCCCCCCCCEEEechhhHHhhC
Q 020287 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (328)
Q Consensus 239 ~~~~l~~~~~~~~~~i~i~d~~~~dg~i~~~N~a~~~~~G 278 (328)
+...+..+++..+...+++|.. ..|+.+|+++..++|
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 4455778888887788999999 999999999999996
No 137
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.45 E-value=21 Score=28.44 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=26.6
Q ss_pred cCceEEeCCCCCCCCEEEechhhHHhhCCCcccc
Q 020287 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (328)
Q Consensus 251 ~~~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~ 284 (328)
...+++.|.. .+.+.+++.++..++||+++++
T Consensus 43 ~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 4557888854 3889999999999999999877
No 138
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=28.05 E-value=2.1e+02 Score=22.09 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=55.3
Q ss_pred HhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCC
Q 020287 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (328)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (328)
.+++|+--++.+.+ + +.|-++-..++|.+...+ ..+.+.+..+..|...- ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 45788877788776 4 234445556677665443 33344444455565432 24567
Q ss_pred CEEEEEEEEEEeeeCCCCeEEEEEEEEeccc
Q 020287 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (328)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt 134 (328)
..+++.++-.|+.+..+|+++|++.+..-..
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLn 143 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLD 143 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEec
Confidence 7788899999998757899999876665443
No 139
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=27.60 E-value=22 Score=31.63 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=37.7
Q ss_pred Cce-EEeCCCCCCCCEEEechhhHHhhCCCcccccccCccc-ccCCCCCHHHHHHHHhhhhc
Q 020287 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVDTDTTVLYQSSTDKGK 311 (328)
Q Consensus 252 ~~i-~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~-l~~~~~~~~~~~~~~~~~~~ 311 (328)
-|+ +.+|.+ ++|+.++....+++|.++ ++|+++.. +.+ ......++..+..
T Consensus 26 hG~Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~----~~~~~~l~~~l~~ 78 (505)
T 3nhq_A 26 HGALVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG----PEVLRMLEEGLTG 78 (505)
T ss_dssp TEEEEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH----HHHHHHHHHHHSC
T ss_pred CeEEEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC----HHHHHHHHHHhhc
Confidence 344 445654 999999999999999988 99999987 664 3445566665543
No 140
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=27.21 E-value=87 Score=25.49 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCCEEEechHHHHhhC
Q 020287 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (328)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g 55 (328)
..-++.+++..+.+.+++|.. ..++.+|+.+..+|+
T Consensus 98 ~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 98 LQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred CHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 345777888888899999999 999999999999995
No 141
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=25.34 E-value=1.5e+02 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=19.7
Q ss_pred EEEEEEEEeeeCCC-CeEEEEEEEEeccccc
Q 020287 107 WMLFKMSLVFGKED-GRATHFVAVQVPIVSR 136 (328)
Q Consensus 107 ~~~~~~~~~~~~~~-g~~~~~~~~~~DIte~ 136 (328)
++.....|+.+ .+ |++.|++++..++...
T Consensus 118 ~~i~~~~pi~~-~~~g~~~Gvl~~~i~~~~l 147 (240)
T 3c8c_A 118 ILVSVATPVKD-SATGQFLGSIFYDVSLAEL 147 (240)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEECHHHH
T ss_pred EEEEEEEEEEE-CCCCeEEEEEEEEEEHHHH
Confidence 44455678887 44 9999988777665433
No 142
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=25.25 E-value=2.7e+02 Score=22.55 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCCCEEE
Q 020287 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (328)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (328)
-..+++.|.+ |.++..+.. ..+...+|.+. ... ..+.+++..+.... ...-...|. +
T Consensus 113 ~~~i~v~d~~---G~viass~~------~~p~~~~g~d~------~~R----~yf~~Al~g~~~~~--~~~~~~tg~--~ 169 (305)
T 3e4o_A 113 AAVIYLIDRS---GVAVAASNW------QEPTSFVGNDY------AFR----DYFRLAVRDGMAEH--FAMGTVSKR--P 169 (305)
T ss_dssp CSEEEEEETT---SBEEEETTT------TSTTCCTTCBC------TTS----HHHHHHHHHSEEEE--EEECTTTCC--E
T ss_pred ccEEEEECCC---CCEEEeCCC------cCcccccCCCc------ccc----HHHHHHHhcCCcEE--EEEecCCCC--E
Confidence 3478999999 988775431 01111223221 111 23344554432221 112222344 3
Q ss_pred EEEEEEEeeeCCCCeEEEEEEEEeccccccc
Q 020287 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (328)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DIte~k~ 138 (328)
......|+.+ +|+++|++++..++....+
T Consensus 170 ~i~~a~PV~~--~G~viGVv~v~i~l~~l~~ 198 (305)
T 3e4o_A 170 GLYISRRVDG--PGGPLGVIVAKLEFDGVEA 198 (305)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEcc--CCeEEEEEEEEEcHHHHHH
Confidence 4456788887 6999999998888775433
No 143
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=23.95 E-value=2.2e+02 Score=25.32 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCcc-cc
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQ 70 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~-l~ 70 (328)
+++++.+ ++|+.++.....++|.++ ++|++... +.
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll 64 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQV 64 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhC
Confidence 4556666 999999999999999988 88987665 54
No 144
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=21.70 E-value=37 Score=30.30 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccC
Q 020287 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG 71 (328)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~ 71 (328)
+++++.. +++|+.++.....++|.++++++|++...+.+
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~ 70 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFD 70 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCE
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcC
Confidence 4556642 38999999999999999999999998666554
No 145
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=20.89 E-value=3.2e+02 Score=21.79 Aligned_cols=88 Identities=14% Similarity=0.219 Sum_probs=53.8
Q ss_pred HhcCCcEEEEEcCCCCCCCEEEechHHHHhhCCChhhhcCCCCccccCCCCChhHHHHHHHHHHcCCCeeEEEEEEecCC
Q 020287 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (328)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (328)
..++|+--++.+.+ |. .|-++-..++|.+...+ ..+.+.+..+..|...- .+..+
T Consensus 77 p~~~pDfRFI~~~~---~~--~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---NI--LWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---EE--EEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---ce--EEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 44677777777766 42 33334445566555432 34444444555565432 34566
Q ss_pred CEEEEEEEEEEeeeCCCCeEEEEEEEEeccccc
Q 020287 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (328)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIte~ 136 (328)
..+++.++..|+.+..+|+++|++.+.......
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnN 164 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDN 164 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCc
Confidence 778888999999875689999988776655433
No 146
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=20.41 E-value=19 Score=20.96 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=27.2
Q ss_pred ceEEeCCCCCCCCEEEechhhHHhhCCCcccccc
Q 020287 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286 (328)
Q Consensus 253 ~i~i~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG 286 (328)
.++++...+.|..|..+|++..++|..+-.++..
T Consensus 20 hmiltstelgdntiqaandaanklfsltiadlta 53 (78)
T 3gz2_P 20 HMILTSTELGDNTIQAANDAANKLFSLTIADLTA 53 (78)
T ss_pred eEEEeeeccCccHHHHHHHHhhhhheeehhhhcc
Confidence 3566777777889999999999999887776643
Done!