Query 020289
Match_columns 328
No_of_seqs 233 out of 1230
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05469 Transthyretin_like Tra 100.0 2.4E-47 5.2E-52 317.8 11.9 109 207-328 1-113 (113)
2 TIGR02962 hdxy_isourate hydrox 100.0 5.2E-47 1.1E-51 316.0 12.3 108 207-328 1-112 (112)
3 cd05822 TLP_HIUase HIUase (5-h 100.0 8.8E-47 1.9E-51 314.6 12.1 108 207-328 1-112 (112)
4 PF00576 Transthyretin: HIUase 100.0 6.8E-47 1.5E-51 315.3 7.9 108 207-327 1-112 (112)
5 TIGR03164 UHCUDC OHCU decarbox 100.0 2.9E-45 6.3E-50 322.0 18.3 146 8-154 1-157 (157)
6 COG2351 Transthyretin-like pro 100.0 8.4E-46 1.8E-50 307.3 12.3 108 207-328 9-124 (124)
7 TIGR03180 UraD_2 OHCU decarbox 100.0 1.3E-44 2.9E-49 318.2 18.7 147 7-155 3-158 (158)
8 PRK13798 putative OHCU decarbo 100.0 1.6E-44 3.4E-49 320.0 18.7 149 7-157 13-165 (166)
9 COG3195 Uncharacterized protei 100.0 1.1E-44 2.3E-49 316.2 15.9 152 7-159 13-175 (176)
10 cd05821 TLP_Transthyretin Tran 100.0 1.9E-44 4.2E-49 303.5 12.5 111 202-325 2-116 (121)
11 smart00095 TR_THY Transthyreti 100.0 4.2E-44 9.1E-49 301.5 11.9 108 205-325 2-113 (121)
12 PF09349 OHCU_decarbox: OHCU d 100.0 5.4E-43 1.2E-47 307.9 13.3 146 7-153 3-159 (159)
13 PRK15036 hydroxyisourate hydro 100.0 1.5E-42 3.3E-47 298.5 12.8 107 207-328 27-137 (137)
14 KOG3006 Transthyretin and rela 100.0 2.2E-42 4.7E-47 286.9 10.0 112 203-328 17-132 (132)
15 PRK13799 unknown domain/N-carb 100.0 3.4E-39 7.3E-44 333.9 18.9 153 7-160 10-178 (591)
16 PRK13590 putative bifunctional 100.0 3.9E-39 8.4E-44 333.4 18.8 154 7-161 10-179 (591)
17 PRK13797 putative bifunctional 100.0 2.2E-38 4.7E-43 320.8 18.7 149 7-157 348-515 (516)
18 PF13620 CarboxypepD_reg: Carb 96.7 0.00098 2.1E-08 51.0 2.5 59 209-288 2-60 (82)
19 PF11974 MG1: Alpha-2-macroglo 96.6 0.0041 9E-08 50.7 5.1 44 206-264 12-56 (97)
20 PF10794 DUF2606: Protein of u 93.2 0.24 5.2E-06 42.3 5.8 67 206-285 41-107 (131)
21 PF13715 DUF4480: Domain of un 91.8 0.24 5.2E-06 38.4 3.9 55 209-288 2-56 (88)
22 cd03463 3,4-PCD_alpha Protocat 90.2 0.51 1.1E-05 43.0 5.1 57 208-265 38-97 (185)
23 PF01060 DUF290: Transthyretin 89.9 0.51 1.1E-05 36.9 4.2 36 218-264 7-42 (80)
24 PRK03094 hypothetical protein; 88.6 0.44 9.5E-06 37.9 2.9 24 106-129 57-80 (80)
25 cd03457 intradiol_dioxygenase_ 88.1 0.76 1.6E-05 41.9 4.6 64 209-278 29-99 (188)
26 PF10670 DUF4198: Domain of un 87.6 1.1 2.4E-05 40.0 5.3 62 205-283 149-210 (215)
27 cd03868 M14_CPD_I The first ca 87.5 1.3 2.8E-05 44.1 6.2 57 206-288 295-351 (372)
28 COG3485 PcaH Protocatechuate 3 86.0 1.3 2.8E-05 41.7 5.0 94 209-304 75-191 (226)
29 cd03464 3,4-PCD_beta Protocate 85.7 2.3 5E-05 39.8 6.5 52 209-264 68-126 (220)
30 cd00421 intradiol_dioxygenase 85.2 2.2 4.8E-05 37.0 5.8 66 208-279 13-79 (146)
31 TIGR02422 protocat_beta protoc 84.9 1.7 3.7E-05 40.7 5.2 52 209-264 63-121 (220)
32 cd03459 3,4-PCD Protocatechuat 84.7 1.9 4E-05 38.3 5.1 54 208-265 17-77 (158)
33 cd03866 M14_CPM Peptidase M14 84.2 2.2 4.7E-05 42.9 6.0 59 206-288 294-352 (376)
34 PF00775 Dioxygenase_C: Dioxyg 83.8 1.5 3.2E-05 39.8 4.2 67 208-280 31-98 (183)
35 cd03858 M14_CP_N-E_like Carbox 83.3 1.9 4.2E-05 42.8 5.2 55 208-288 299-353 (374)
36 PF08400 phage_tail_N: Prophag 82.7 4.4 9.5E-05 35.3 6.4 61 213-288 8-68 (134)
37 cd03863 M14_CPD_II The second 82.5 2.6 5.6E-05 42.4 5.7 57 207-288 297-353 (375)
38 TIGR02439 catechol_proteo cate 81.8 2.1 4.5E-05 41.6 4.6 53 208-264 130-184 (285)
39 cd03458 Catechol_intradiol_dio 81.6 2.3 4.9E-05 40.8 4.7 53 208-264 106-160 (256)
40 TIGR02423 protocat_alph protoc 81.5 2.8 6.1E-05 38.4 5.1 53 208-264 41-100 (193)
41 TIGR02438 catachol_actin catec 80.6 2.6 5.7E-05 40.9 4.8 53 208-264 134-188 (281)
42 PF02369 Big_1: Bacterial Ig-l 79.8 2.8 6E-05 34.0 4.1 63 207-285 25-89 (100)
43 cd03460 1,2-CTD Catechol 1,2 d 79.8 2.4 5.2E-05 41.1 4.3 55 208-264 126-180 (282)
44 TIGR02465 chlorocat_1_2 chloro 79.4 2.8 6E-05 40.0 4.5 53 208-264 100-154 (246)
45 PF05738 Cna_B: Cna protein B- 77.2 2.4 5.1E-05 31.4 2.7 59 223-304 2-63 (70)
46 PF03698 UPF0180: Uncharacteri 76.8 2.6 5.6E-05 33.5 2.9 23 107-129 58-80 (80)
47 cd03462 1,2-CCD chlorocatechol 74.6 4.6 0.0001 38.5 4.5 53 208-264 101-155 (247)
48 cd03864 M14_CPN Peptidase M14 73.5 7 0.00015 39.6 5.8 56 207-288 316-371 (392)
49 PF05688 DUF824: Salmonella re 73.4 3.3 7.1E-05 29.8 2.4 24 208-232 16-39 (47)
50 cd03461 1,2-HQD Hydroxyquinol 73.2 4.9 0.00011 38.9 4.4 53 208-264 122-176 (277)
51 smart00634 BID_1 Bacterial Ig- 72.4 9.4 0.0002 30.1 5.2 67 206-287 19-85 (92)
52 cd06245 M14_CPD_III The third 71.3 6.1 0.00013 39.5 4.7 56 207-289 287-342 (363)
53 cd03867 M14_CPZ Peptidase M14- 71.2 6.5 0.00014 39.7 4.9 56 207-288 318-373 (395)
54 PF12866 DUF3823: Protein of u 70.0 6 0.00013 37.1 4.1 77 206-303 21-102 (222)
55 PF05751 FixH: FixH; InterPro 68.6 22 0.00047 30.1 7.0 62 207-282 69-130 (146)
56 PF01835 A2M_N: MG2 domain; I 64.0 38 0.00083 26.5 7.2 60 215-285 25-86 (99)
57 PF14686 fn3_3: Polysaccharide 63.4 13 0.00029 30.1 4.4 27 253-284 42-68 (95)
58 KOG2649 Zinc carboxypeptidase 62.7 19 0.00041 37.5 6.3 72 208-305 379-456 (500)
59 cd03865 M14_CPE_H Peptidase M1 60.1 17 0.00036 37.1 5.4 55 208-288 327-381 (402)
60 PF12836 HHH_3: Helix-hairpin- 53.7 7 0.00015 29.2 1.1 33 7-39 10-47 (65)
61 PRK02515 psbU photosystem II c 50.5 25 0.00054 30.6 4.1 50 7-63 57-107 (132)
62 PF07210 DUF1416: Protein of u 50.4 43 0.00093 27.0 5.1 54 208-284 9-62 (85)
63 PF11288 DUF3089: Protein of u 50.2 37 0.0008 31.6 5.5 48 92-139 79-128 (207)
64 PF07106 TBPIP: Tat binding pr 49.5 1.3E+02 0.0028 26.4 8.7 116 29-160 14-141 (169)
65 PF13986 DUF4224: Domain of un 49.4 32 0.0007 24.4 3.9 31 85-115 3-38 (47)
66 PRK03892 ribonuclease P protei 48.3 29 0.00063 32.5 4.5 53 97-151 158-216 (216)
67 COG1691 NCAIR mutase (PurE)-re 43.3 17 0.00037 34.6 2.2 56 86-141 28-90 (254)
68 COG2373 Large extracellular al 40.9 68 0.0015 38.4 7.0 45 206-265 304-348 (1621)
69 cd03869 M14_CPX_like Peptidase 40.5 58 0.0013 33.3 5.7 56 208-289 330-385 (405)
70 PF13446 RPT: A repeated domai 36.2 81 0.0018 23.0 4.5 41 113-154 15-55 (62)
71 PF01190 Pollen_Ole_e_I: Polle 35.3 70 0.0015 25.4 4.4 36 218-264 17-52 (97)
72 PF14734 DUF4469: Domain of un 34.6 1.3E+02 0.0028 24.9 5.9 39 245-285 46-86 (102)
73 COG1477 ApbE Membrane-associat 34.0 27 0.00058 34.8 2.1 39 209-267 257-295 (337)
74 PF07037 DUF1323: Putative tra 33.8 41 0.00088 28.9 2.8 83 8-96 1-104 (122)
75 PF04079 DUF387: Putative tran 31.8 2.3E+02 0.0049 25.1 7.4 74 74-148 15-92 (159)
76 COG5255 Uncharacterized protei 30.6 33 0.00071 32.2 1.9 87 57-147 119-209 (239)
77 PF05985 EutC: Ethanolamine am 29.3 84 0.0018 29.9 4.4 81 35-120 35-118 (237)
78 PF07495 Y_Y_Y: Y_Y_Y domain; 29.1 94 0.002 22.2 3.9 32 272-303 35-66 (66)
79 KOG1948 Metalloproteinase-rela 28.9 58 0.0013 36.6 3.6 56 208-287 317-372 (1165)
80 PF11629 Mst1_SARAH: C termina 28.9 50 0.0011 24.0 2.2 33 71-103 6-38 (49)
81 PF04536 TPM: TLP18.3, Psb32 a 28.5 99 0.0021 24.7 4.3 30 85-114 2-31 (119)
82 TIGR03769 P_ac_wall_RPT actino 28.0 47 0.001 23.0 1.9 13 274-286 11-23 (41)
83 COG5266 CbiK ABC-type Co2+ tra 26.9 1.3E+02 0.0028 29.2 5.2 70 205-284 170-240 (264)
84 cd01976 Nitrogenase_MoFe_alpha 26.9 3.2E+02 0.007 27.6 8.5 48 95-143 233-283 (421)
85 PRK11072 bifunctional glutamin 26.9 1.3E+02 0.0028 34.1 6.0 102 13-115 555-689 (943)
86 COG2357 PpGpp synthetase catal 25.9 50 0.0011 31.3 2.3 67 88-157 31-99 (231)
87 COG2967 ApaG Uncharacterized p 25.8 76 0.0017 27.3 3.1 45 245-289 40-111 (126)
88 PRK00135 scpB segregation and 24.9 2.4E+02 0.0052 25.7 6.5 71 74-146 22-98 (188)
89 PRK14108 bifunctional glutamin 24.9 1.8E+02 0.0039 33.2 6.7 104 12-115 581-709 (986)
90 PF14533 USP7_C2: Ubiquitin-sp 24.8 62 0.0013 29.8 2.7 27 102-128 129-156 (213)
91 COG3660 Predicted nucleoside-d 24.3 1.9E+02 0.004 28.6 5.8 48 85-132 177-224 (329)
92 TIGR02461 osmo_MPG_phos mannos 24.3 1.5E+02 0.0033 27.1 5.2 35 88-129 19-53 (225)
93 TIGR01641 phageSPP1_gp7 phage 24.2 1.9E+02 0.004 23.2 5.1 36 112-147 10-45 (108)
94 cd04180 UGPase_euk_like Eukary 23.4 1.2E+02 0.0026 28.9 4.4 39 88-126 36-74 (266)
95 cd01971 Nitrogenase_VnfN_like 22.8 2.4E+02 0.0051 28.5 6.7 38 95-132 221-262 (427)
96 PF00148 Oxidored_nitro: Nitro 22.4 3.8E+02 0.0082 26.3 7.9 34 96-129 207-243 (398)
97 KOG1110 Putative steroid membr 22.3 72 0.0016 29.2 2.5 25 82-106 125-149 (183)
98 PRK10969 DNA polymerase III su 21.7 77 0.0017 25.0 2.2 53 70-130 5-58 (75)
99 PF14579 HHH_6: Helix-hairpin- 21.4 1.1E+02 0.0024 24.0 3.2 25 19-43 36-63 (90)
100 TIGR01486 HAD-SF-IIB-MPGP mann 21.1 1.7E+02 0.0037 26.8 4.9 20 105-125 32-51 (256)
101 PF06488 L_lac_phage_MSP: Lact 20.2 1.8E+02 0.0039 27.6 4.7 48 247-304 252-299 (301)
102 PF06299 DUF1045: Protein of u 20.2 71 0.0015 28.6 2.0 18 93-110 87-104 (160)
103 PF09430 DUF2012: Protein of u 20.2 2.4E+02 0.0052 23.6 5.1 40 253-303 22-61 (123)
104 PF08006 DUF1700: Protein of u 20.1 2.1E+02 0.0046 25.2 5.0 37 116-152 2-38 (181)
No 1
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=100.00 E-value=2.4e-47 Score=317.83 Aligned_cols=109 Identities=33% Similarity=0.602 Sum_probs=100.3
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
+|||||||||++|+||+||+|+|++++. +++|+.|++++||+||||++|+. ++.+.+|+|||+|+||+
T Consensus 1 ~~lStHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~~l~-~~~~~~G~Y~l~F~t~~ 68 (113)
T cd05469 1 CPLMVKVLDAVRGSPAANVAIKVFRKTA-----------DGSWEIFATGKTNEDGELHGLIT-EEEFXAGVYRVEFDTKS 68 (113)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCccCccc-cccccceEEEEEEehHH
Confidence 5899999999999999999999998752 24799999999999999998876 56789999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
||+ ++|||+|+|+|.|++++ ++|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~v~d~~-~~HYHvPLLlSP~gYSTYRGS 113 (113)
T cd05469 69 YWKALGITPFHEYAEVVFTANDSG-HRHYTIALLLSPFSYSTTAVV 113 (113)
T ss_pred hHhhCCCCCCcceEEEEEEECCCC-CCCEEeCEEecCCeeeeecCC
Confidence 997 78999999999999842 799999999999999999998
No 2
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=100.00 E-value=5.2e-47 Score=316.01 Aligned_cols=108 Identities=51% Similarity=0.941 Sum_probs=100.9
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
++||||||||++|+||+||+|+|+++++ ++|+.|++++||+||||++|+...+.+.+|+|+|+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~ 68 (112)
T TIGR02962 1 SPLSTHVLDTTSGKPAAGVPVTLYRLDG------------SGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGD 68 (112)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC------------CCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhh
Confidence 4799999999999999999999998753 4699999999999999999877667889999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
||+ ++|||+|+|+|+|+++ .+|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~v~i~F~i~~~--~~HyHvPlllSP~~ySTYRGS 112 (112)
T TIGR02962 69 YFAARGVETFYPEVEVVFTIADP--GQHYHVPLLLSPYGYSTYRGS 112 (112)
T ss_pred hhhhcCCCCCccceEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 997 7899999999999985 799999999999999999998
No 3
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=100.00 E-value=8.8e-47 Score=314.59 Aligned_cols=108 Identities=51% Similarity=0.938 Sum_probs=101.2
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
++||||||||+.|+||+||+|+|+++.+ ++|+.|++++||+||||+.|+..++.+.+|+|||+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 68 (112)
T cd05822 1 GPLSTHVLDTATGKPAAGVAVTLYRLDG------------NGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGA 68 (112)
T ss_pred CCceeEEEeCCCCcccCCCEEEEEEecC------------CCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhh
Confidence 4799999999999999999999999763 4699999999999999999887667899999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
||+ ++|||+|+|+|.|+++ .+|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~i~~~--~~HYHvPlLlSP~sYSTYRGS 112 (112)
T cd05822 69 YFAARGQESFYPEVEVRFTITDP--TEHYHVPLLLSPFGYSTYRGS 112 (112)
T ss_pred hhhhcCCCccceeeEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 998 6899999999999995 799999999999999999998
No 4
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=100.00 E-value=6.8e-47 Score=315.32 Aligned_cols=108 Identities=46% Similarity=0.859 Sum_probs=99.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
++||||||||++|+||+||+|+|+++.. +++|+.|++++||+||||+.++..++.+.+|+|||+|+||+
T Consensus 1 ~~iStHVLDt~~G~PA~gv~V~L~~~~~-----------~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 69 (112)
T PF00576_consen 1 CPISTHVLDTTTGKPAAGVPVTLYRLDS-----------DGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGD 69 (112)
T ss_dssp SSEEEEEEETTTTEE-TT-EEEEEEEET-----------TSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHH
T ss_pred CCcEEEEeeCCCCCCccCCEEEEEEecC-----------CCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHH
Confidence 5899999999999999999999999873 46899999999999999988877788999999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccC
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRG 327 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRG 327 (328)
||+ ++|||+|+|+|.|+++ .+||||||||||||||||||
T Consensus 70 Yf~~~~~~~F~p~V~I~F~v~d~--~~HYHvPLLlSP~gYSTYRG 112 (112)
T PF00576_consen 70 YFAAQGIPSFYPEVEIRFTVKDP--QQHYHVPLLLSPFGYSTYRG 112 (112)
T ss_dssp HHHHTTCSTSESEEEEEEEESTT--TSEEEEEEEEETTEEEEEEB
T ss_pred hHhhcCCCeeeecceEEEEECCC--CCcEEEEEEecCceeeEEcC
Confidence 998 8999999999999996 69999999999999999998
No 5
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=100.00 E-value=2.9e-45 Score=322.04 Aligned_cols=146 Identities=29% Similarity=0.419 Sum_probs=139.2
Q ss_pred CCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHHH
Q 020289 8 LDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKAE 77 (328)
Q Consensus 8 m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~E 77 (328)
|++++|+++|| +||+|+.+|++|||+|+++|+.++.++| ..++.++|+++|++||+||++. ++.+|++|
T Consensus 1 m~~~~fv~~l~~l~E~spw~a~~~~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~ll~~HP~Lg~~~~~~~~ls~~S~~E 79 (157)
T TIGR03164 1 MDKADFVAALGDIFEHSPWIAERAWAQRPFDSIEDLHAAMVGAV-RAASPEQQLALIRAHPDLAGKLAVAGELTAESTSE 79 (157)
T ss_pred CCHHHHHHHHhhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHhCCcccccccccccchHhhHHH
Confidence 78999999887 8999999999999999999999999996 6689999999999999999987 68899999
Q ss_pred hhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 020289 78 QSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 154 (328)
Q Consensus 78 Qs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L 154 (328)
|+++ +++++++++++|.+||++|++||||||||||+|+++++||++|++||+|++++|+++|++||+|||++||.+|
T Consensus 80 Q~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kIa~~RL~~l 157 (157)
T TIGR03164 80 QASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFARALREIERIARFRLRDL 157 (157)
T ss_pred HHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9976 8899999999999999999999999999999999999999999999999999999999999999999999875
No 6
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=100.00 E-value=8.4e-46 Score=307.26 Aligned_cols=108 Identities=44% Similarity=0.758 Sum_probs=101.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
+.|||||||+++|+||+||+|+|+++.+ ++|++|.+..||+||||+.++..++.+.+|+|+|+|++|+
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~~------------~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gd 76 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLEG------------NQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGD 76 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEecC------------CcceeeeEEEecCCCcccccccCccccccceEEEEEEcch
Confidence 4799999999999999999999999974 4899999999999999998777788999999999999999
Q ss_pred CCC--------CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 287 YCP--------EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 287 Yf~--------~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
||+ ++|||.|+|+|.|.|. ++|||||||||||||||||||
T Consensus 77 Yf~~~g~~~~~~~Fl~~V~vrF~iad~--~~HYHVPLLlSPygYSTYRGS 124 (124)
T COG2351 77 YFKSRGVQLADPPFLDVVPVRFGIADV--DEHYHVPLLLSPYGYSTYRGS 124 (124)
T ss_pred hhhccCcccCCCCccceEEEEEEEcCC--CCceeeeeEecCcccceecCC
Confidence 997 4699999999999984 799999999999999999998
No 7
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=100.00 E-value=1.3e-44 Score=318.15 Aligned_cols=147 Identities=35% Similarity=0.611 Sum_probs=135.5
Q ss_pred cCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHHH
Q 020289 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKAE 77 (328)
Q Consensus 7 ~m~~~~f~~----~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~E 77 (328)
.|++++|++ ||.++.|++++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|..|
T Consensus 3 ~l~~~~f~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~E 81 (158)
T TIGR03180 3 QLPADEASATLMECCAIPAWARTLVAARPFASAEALLAAADQAW-QNLSEQDLFEALAGHPRIGEKPAGQAAYAATSRRE 81 (158)
T ss_pred CCCHHHHHHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccchhhhhHHH
Confidence 478899887 5555555579999999999999999999997 4589999999999999999987 57789999
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020289 78 QSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (328)
Q Consensus 78 Qs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~ 155 (328)
|+ ++++++++++++|.+||++|++||||||||||+|+|+++||+.|++||.|++++|+.+|++||.|||++||.+|+
T Consensus 82 Qa-gl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~~RL~~l~ 158 (158)
T TIGR03180 82 QA-GVDGADEETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTIAAEQLRKINRLRLSRLI 158 (158)
T ss_pred Hh-cccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 96 677999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=100.00 E-value=1.6e-44 Score=320.00 Aligned_cols=149 Identities=37% Similarity=0.623 Sum_probs=138.1
Q ss_pred cCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCCCCcccHHHhhHhh
Q 020289 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTAL 82 (328)
Q Consensus 7 ~m~~~~f~~----~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~~s~~S~~EQs~al 82 (328)
.|++++|++ ||+++.||+++|++|||+|+++|+.++.++| ..++.++|+++|++||+||++.....|..||+ ++
T Consensus 13 ~l~~~~f~~~l~~~~e~~~Wa~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~-gl 90 (166)
T PRK13798 13 ALPERQAVHALFECCHSTAWARRLAAARPFADHDALLAAADEAL-AGLSEADIDEALAGHPRIGERPASKASAREQA-GV 90 (166)
T ss_pred CCCHHHHHHHHHHHhcChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccCHHHhc-cc
Confidence 589999987 4554444999999999999999999999997 44899999999999999999985556999999 67
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020289 83 ATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA 157 (328)
Q Consensus 83 ~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~ 157 (328)
++++++++++|.+||++|++||||||||||+|+|+++||++|++||+|++++|+.+|+.||.|||++||.+||+.
T Consensus 91 ~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~lRL~~l~~~ 165 (166)
T PRK13798 91 ADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKVVREELAKINRLRLERLLGP 165 (166)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999974
No 9
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=316.19 Aligned_cols=152 Identities=30% Similarity=0.382 Sum_probs=146.0
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~ 76 (328)
.|++++|++.|| |||+|+++|+.|||.|++.|+.+|..++ ..++.++|+++|++||||++|. +++.|++
T Consensus 13 ~~dr~~Fv~~fg~ifEhSpWvaErA~~~~pf~s~~~l~~am~~~v-~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~ 91 (176)
T COG3195 13 KLDREAFVETFGGIFEHSPWVAERAYDLRPFASAEGLHAAMCRAV-RAASEEERLALIRAHPDLAGKAAIAGELTAESTS 91 (176)
T ss_pred hccHHHHHHHhhhHhhcCchHHHHHhccCCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHH
Confidence 489999999998 9999999999999999999999999996 5589999999999999999998 8999999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020289 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (328)
Q Consensus 77 EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~ 155 (328)
||+++ ||+|+++|+++|.+||.+|.+||||||||||+|+++++|++++++||.|+.++|++.|+.||.+||++||.+|+
T Consensus 92 EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~~Rl~dll 171 (176)
T COG3195 92 EQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIALLRLADLL 171 (176)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 020289 156 SAKA 159 (328)
Q Consensus 156 ~~~~ 159 (328)
.+++
T Consensus 172 ~~~~ 175 (176)
T COG3195 172 PEGN 175 (176)
T ss_pred cccC
Confidence 8754
No 10
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=100.00 E-value=1.9e-44 Score=303.53 Aligned_cols=111 Identities=32% Similarity=0.545 Sum_probs=99.9
Q ss_pred CCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEE
Q 020289 202 PTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 281 (328)
Q Consensus 202 ~~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 281 (328)
+.++|+|||||||||++|+||+||+|+|++... ++.|+.|++++||+||||+.|+. .+.+.+|+|||+
T Consensus 2 ~~~~~~~ittHVLDt~~G~PAaGV~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~ 69 (121)
T cd05821 2 GGDSKCPLMVKVLDAVRGSPAANVAVKVFKKTA-----------DGSWEPFASGKTTETGEIHGLTT-DEQFTEGVYKVE 69 (121)
T ss_pred CCCCCCCcEEEEEECCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCCCCccC-ccccCCeeEEEE
Confidence 456799999999999999999999999988641 25799999999999999998664 457899999999
Q ss_pred EeeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccc
Q 020289 282 FNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 325 (328)
Q Consensus 282 F~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTY 325 (328)
|+||+||+ ++|||+|+|+|.|++++ .+||||||||||||||||
T Consensus 70 F~tg~Yf~~~~~~~F~p~V~I~F~i~d~~-~~HYHVPLLlSP~gYST~ 116 (121)
T cd05821 70 FDTKAYWKKLGISPFHEYAEVVFTANDSG-HRHYTIAALLSPYSYSTT 116 (121)
T ss_pred EehhHhhhhcCCCCCCceEEEEEEECCCC-CCCeEeCeEecCCcceeE
Confidence 99999997 78999999999999851 489999999999999998
No 11
>smart00095 TR_THY Transthyretin.
Probab=100.00 E-value=4.2e-44 Score=301.46 Aligned_cols=108 Identities=32% Similarity=0.575 Sum_probs=98.1
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 205 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
+++|||||||||++|+||+||+|+|++... ++.|+.|++++||+||||+.|+. ++.+.+|+|||+|+|
T Consensus 2 ~~~plTtHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~la~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~F~t 69 (121)
T smart00095 2 SKCPLMVKVLDAVRGSPAVNVAVKVFKKTE-----------EGTWEPFASGKTNESGEIHELTT-DEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCCeEEEEEECCCCccCCCCEEEEEEeCC-----------CCceEEEEEEecCCCccccCccC-cccccceEEEEEEeh
Confidence 578999999999999999999999998641 25899999999999999998664 467899999999999
Q ss_pred CCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccc
Q 020289 285 GKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 325 (328)
Q Consensus 285 g~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTY 325 (328)
|+||+ ++|||+|+|+|+|++++ .+||||||||||||||||
T Consensus 70 g~Yf~~~~~~~F~p~V~V~F~i~d~~-~~HYHVPLLlSP~~YST~ 113 (121)
T smart00095 70 KSYWKALGISPFHEYADVVFTANDSG-HRHYTIAALLSPYSYSTT 113 (121)
T ss_pred hHhHhhcCCCCCCceEEEEEEECCCC-CCCeEECeEecCCcceeE
Confidence 99997 78999999999999851 589999999999999998
No 12
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=100.00 E-value=5.4e-43 Score=307.94 Aligned_cols=146 Identities=41% Similarity=0.600 Sum_probs=123.5
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~ 76 (328)
.|++++|++.|+ +||+++.+++.|||.|+++|+.++.++| ..+++++|+++|++||+||++. ++..|..
T Consensus 3 ~l~~~~~~~~l~~~~e~~~w~~~~a~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~lg~~~~~~~~~s~~S~~ 81 (159)
T PF09349_consen 3 ALSPEEFVAALGNCFESSPWAAERAAAARPFASVDALIAAADEAV-RSLSEEDKLEALRAHPRLGERAARAGNLSAASAS 81 (159)
T ss_dssp CS-HHHHHHHHTTSSTTHHHHHHHHHCGGS-SSHHHHHHHHHHHH-HCS-HHHHHHHHHTS--TTSHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHHHhHhCCCHHHHHHHhccCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCcccccccccccccchhhhh
Confidence 488899987554 6888888888899999999999999997 5689999999999999999974 8999999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 020289 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAK 153 (328)
Q Consensus 77 EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~ 153 (328)
||+++ +++++++++++|.+||++|++||||||||||+|+|+++||++|++||.|++++|+.+|++||.|||++||.|
T Consensus 82 EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGf~Fvi~~~g~s~~~Il~~l~~Rl~n~~~~E~~~A~~Ev~kIa~~RL~k 159 (159)
T PF09349_consen 82 EQASAGLDSLDEEELAELAALNQAYEEKFGFPFVICARGRSAAEILAALERRLNNDPEEELRIALEEVAKIARLRLEK 159 (159)
T ss_dssp HTHHCCTTSTHHHHHHHHHHHHHHHHHHHSS-----GTT--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987 889999999999999999999999999999999999999999999999999999999999999999999986
No 13
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=100.00 E-value=1.5e-42 Score=298.50 Aligned_cols=107 Identities=41% Similarity=0.758 Sum_probs=98.5
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
++|||||||+++|+||+||+|+|++.+ +++|+.|++++||+||||+.+++ .+.+.+|.|+|+|++++
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~------------~~~w~~l~~~~Td~dGR~~~l~~-~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKA------------DNGWLQLNTAKTDKDGRIKALWP-EQTATTGDYRVVFKTGD 93 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEcc------------CCceEEEEEEEECCCCCCccccC-cccCCCeeEEEEEEcch
Confidence 589999999999999999999998864 35899999999999999998654 34588999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
||+ ++|||+|+|+|.|+++ .+|||||||||||||||||||
T Consensus 94 Yf~~~~~~~F~p~v~v~F~i~~~--~~HyHvPlllsP~~yStyRGs 137 (137)
T PRK15036 94 YFKKQNLESFFPEIPVEFHINKV--NEHYHVPLLLSQYGYSTYRGS 137 (137)
T ss_pred hhhccCCCCCcceeEEEEEECCC--CCCeEECeEecCCccccccCC
Confidence 997 7899999999999985 799999999999999999998
No 14
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=286.87 Aligned_cols=112 Identities=47% Similarity=0.845 Sum_probs=104.3
Q ss_pred CCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEE
Q 020289 203 TRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITF 282 (328)
Q Consensus 203 ~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 282 (328)
..+.+|||+||||+++|.||+||+|.|+++.+ +..|+.|+++.||.|||++ |+.....+.||+||++|
T Consensus 17 ~~~~~~itahVLd~s~GsPA~gVqV~~f~~~~-----------~~~w~~igs~~T~~nGrv~-~~~~~~tl~~GtYr~~~ 84 (132)
T KOG3006|consen 17 QVPGPPITAHVLDISRGSPAAGVQVHLFILAN-----------DDTWTPIGSGFTQDNGRVD-WVSPDFTLIPGTYRLVF 84 (132)
T ss_pred CCCCCCcEeEEeecccCCcccceEEEEEEecC-----------CCcccCccccccccCceee-cccchhhhccceEEEEE
Confidence 34568999999999999999999999999875 3589999999999999999 88777889999999999
Q ss_pred eeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 283 NTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 283 ~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
+|+.||+ ++|||+|+|+|.|+|. .||||||||||||||||||||
T Consensus 85 dT~~Y~~a~gv~sFypyvevvf~in~s--~qhyhvpllLsPygySTyrgs 132 (132)
T KOG3006|consen 85 DTEPYYKALGVESFYPYVEVVFNINDS--TQHYHVPLLLSPYGYSTYRGS 132 (132)
T ss_pred ecccccccCCcccccccEEEEEEeccC--cceEEEeEEecccceeeeccC
Confidence 9999998 7999999999999996 599999999999999999998
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=333.91 Aligned_cols=153 Identities=26% Similarity=0.358 Sum_probs=142.5
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~ 76 (328)
.|++++|++.|+ +||||+++|++|||+|+++|++++..+| ..++.++|+++|++||+||++. ++.+|++
T Consensus 10 ~~~~~~~~~~~~~~~e~~~w~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13799 10 AADLAAAADLLDGIYEHSPWIAEAAAALGPFPSIAAIKQALAGVL-DAADRAAKLDLIRAHPELAGKAAEAGELTAESTG 88 (591)
T ss_pred CCCHHHHHHHHHhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCcccccCcccccccchhhHh
Confidence 589999987443 9999999999999999999999999996 6689999999999999999986 6889999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-----CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020289 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGR-----TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 150 (328)
Q Consensus 77 EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~-----s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lR 150 (328)
||+++ +++++++++++|.+||++|++||||||||||+|+ ++++||++|++||.|++++|+++|++||.|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~E~~~a~~e~~~I~~~R 168 (591)
T PRK13799 89 EQAKAGLNLCTPEEFAAIQKLNADYGKKFGFPFILAVKGARGAGLAKAEIIATFERRLHNHPDDELGEALRNIGRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEcCcccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99964 8899999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred HHhhhcccCC
Q 020289 151 LAKLFSAKAK 160 (328)
Q Consensus 151 L~~L~~~~~~ 160 (328)
|.+||...+.
T Consensus 169 l~~l~~~~~~ 178 (591)
T PRK13799 169 INDKFGYTPA 178 (591)
T ss_pred HHHHhCCChh
Confidence 9999987443
No 16
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=3.9e-39 Score=333.40 Aligned_cols=154 Identities=27% Similarity=0.364 Sum_probs=144.5
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~ 76 (328)
.|++++|++.|+ +||||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|+.
T Consensus 10 ~l~~~~~~~~l~~~~e~~~~~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~hP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13590 10 AASAAEATALLDGLYEHSPWIAERALAQRPFRSLAQLKHALVQVV-REAGRDAQLGLIRAHPELAGKAMVAGSLTAESTH 88 (591)
T ss_pred CCCHHHHHHHhhhhccCChHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCccccCCcccCccchhHhHH
Confidence 599999998665 8999999999999999999999999996 5689999999999999999976 6888999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020289 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASG-----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 150 (328)
Q Consensus 77 EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g-----~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lR 150 (328)
||+++ +++++++++++|.+||++|++||||||||||+| +++++||++|++||.|++++|+++|++||.|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~~E~~~a~~e~~~I~~~R 168 (591)
T PRK13590 89 EQGKAGLTHCTPEEFARIQQLNADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPDFELAEALRNIHRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99975 889999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhhhcccCCC
Q 020289 151 LAKLFSAKAKA 161 (328)
Q Consensus 151 L~~L~~~~~~~ 161 (328)
|.+|+..+.+.
T Consensus 169 l~~~~~~~~~~ 179 (591)
T PRK13590 169 LNDKFGAEPVL 179 (591)
T ss_pred HHHHhCCCchH
Confidence 99999986544
No 17
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=100.00 E-value=2.2e-38 Score=320.76 Aligned_cols=149 Identities=38% Similarity=0.665 Sum_probs=135.5
Q ss_pred cCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----C------C
Q 020289 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----S------S 71 (328)
Q Consensus 7 ~m~~~~f~~----~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~------s 71 (328)
.|++++|++ ||+++.|+++++++|||+|+++|+++|.++| ..++.++|+++|++||+||++. + +
T Consensus 348 al~~~~f~~~l~~c~e~spW~~~~~~~RPF~s~~aL~~a~~~~v-~~as~e~~l~aL~aHPdLg~r~a~~~~~t~~a~~t 426 (516)
T PRK13797 348 ALTPDAAREELLACCGSEDWASAVAARRPFGTLAALLPAAEQEW-WRLPESAWLEAFTAHPRIGERPTQAPAPPTSARAT 426 (516)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCcccccccccccccccccch
Confidence 488888876 6665555699999999999999999999996 5579999999999999999976 2 3
Q ss_pred ccc----HHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020289 72 QWS----KAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 147 (328)
Q Consensus 72 ~~S----~~EQs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa 147 (328)
.+| .+|| +++++++++++++|.+||++|++||||||||||+|+|+++||++|++||.|++++|+++|+.||.|||
T Consensus 427 ~~S~d~~~~EQ-AGL~~ls~~e~~~L~~lN~aY~eKFGFpFIIca~G~s~~eILa~l~~RL~N~~e~E~~~Al~Ev~kIa 505 (516)
T PRK13797 427 VVSLDAPRREQ-AAMDQAAEDVRAAFARGNAAYEERFGFIFLVRAAGRGAEEMLELLRARLAHDPEQELRIAAGQQAEIT 505 (516)
T ss_pred hccccchhhhh-hccccCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 578 8888 45779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcc
Q 020289 148 ELRLAKLFSA 157 (328)
Q Consensus 148 ~lRL~~L~~~ 157 (328)
++||.+||..
T Consensus 506 ~lRL~~ll~~ 515 (516)
T PRK13797 506 ALRLRHLITG 515 (516)
T ss_pred HHHHHHHhcc
Confidence 9999999975
No 18
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.75 E-value=0.00098 Score=51.01 Aligned_cols=59 Identities=34% Similarity=0.493 Sum_probs=41.7
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCC
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 288 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 288 (328)
|+-.|.|. .|.|.+|+.|.|..... .......||+||+..- ..+.+|.|+|.+.-..|.
T Consensus 2 I~G~V~d~-~g~pv~~a~V~l~~~~~---------------~~~~~~~Td~~G~f~~-----~~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 2 ISGTVTDA-TGQPVPGATVTLTDQDG---------------GTVYTTTTDSDGRFSF-----EGLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp EEEEEEET-TSCBHTT-EEEET--TT---------------TECCEEE--TTSEEEE-----EEE-SEEEEEEEEBTTEE
T ss_pred EEEEEEcC-CCCCcCCEEEEEEEeeC---------------CCEEEEEECCCceEEE-----EccCCEeEEEEEEECCcc
Confidence 67899998 99999999999864321 2357799999999852 235679999999776664
No 19
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=96.57 E-value=0.0041 Score=50.65 Aligned_cols=44 Identities=30% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEE-ecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEM-WKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~-~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
...+...|-|..+|+|.+|+.|+|+. .. -+.|++++||+||++.
T Consensus 12 ~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~---------------~~~l~~g~TD~~G~a~ 56 (97)
T PF11974_consen 12 PDGLLVWVTSLSTGKPVAGAEVELYDSRN---------------GQVLASGKTDADGFAS 56 (97)
T ss_pred CCCEEEEEeeCCCCCccCCCEEEEEECCC---------------CcEeeeeeeCCCceEE
Confidence 45688999999999999999999986 32 2489999999999886
No 20
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=93.16 E-value=0.24 Score=42.25 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=47.8
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
..|+|-||=|. -|.|+.|++|.|-+-...+.+|+-. .-+.-|.||..|.+. | .....|.|-+.|.-+
T Consensus 41 ~~pVT~hVen~-e~~pi~~~ev~lmKa~ds~~qPs~e-------ig~~IGKTD~~Gki~--W---k~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 41 VNPVTFHVENA-EGQPIKDFEVTLMKAADSDPQPSKE-------IGISIGKTDEEGKII--W---KNGRKGKYIVFLPNG 107 (131)
T ss_pred cccEEEEEecC-CCCcccceEEEEEeccccCCCCchh-------hceeecccCCCCcEE--E---ecCCcceEEEEEcCC
Confidence 46899999885 6999999999998744433333321 224568999999885 2 345689999966544
No 21
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=91.81 E-value=0.24 Score=38.38 Aligned_cols=55 Identities=29% Similarity=0.421 Sum_probs=42.5
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCC
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 288 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 288 (328)
|+-.|+|..+|.|.+|+.|.+..-. ..+.||+||+..-- +.+|.|.|.|.-=.|-
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~-------------------~~~~Td~~G~F~i~------~~~g~~~l~is~~Gy~ 56 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK-------------------KGTVTDENGRFSIK------LPEGDYTLKISYIGYE 56 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc-------------------ceEEECCCeEEEEE------EcCCCeEEEEEEeCEE
Confidence 6778999999999999999985311 34789999998621 4579999999655543
No 22
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=90.25 E-value=0.51 Score=43.00 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=36.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC---CCCceEEEEEEeCCCCCcCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD---VSGWVYQGSSTTNKDGRCGQ 265 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~---~~~~~~l~~~~Td~DGR~~~ 265 (328)
-|+-+|+|+ .|+|.+|..|++..-+....-..+.... +..|..-+...||+|||..-
T Consensus 38 ~l~G~V~D~-~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F 97 (185)
T cd03463 38 TLEGRVYDG-DGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSF 97 (185)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEE
Confidence 367889997 5999999999986544321111111111 13454556789999999863
No 23
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=89.92 E-value=0.51 Score=36.85 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 218 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 218 ~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
.|+|++|+.|+|...+.. ..=.+|+++.||.+|+..
T Consensus 7 ~~~P~~~~~V~L~e~d~~-----------~~Ddll~~~~Td~~G~F~ 42 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDYF-----------DPDDLLDETKTDSDGNFE 42 (80)
T ss_pred CCccCCCCEEEEEECCCC-----------CCCceeEEEEECCCceEE
Confidence 699999999999865421 122468999999998764
No 24
>PRK03094 hypothetical protein; Provisional
Probab=88.59 E-value=0.44 Score=37.93 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=22.0
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhc
Q 020289 106 FIFIICASGRTAAEILAELKKRYT 129 (328)
Q Consensus 106 fpFVIcv~g~s~~eIL~~l~~Rl~ 129 (328)
-.+||+|+|+|++||...++.||.
T Consensus 57 ~~pVI~A~G~TaeEI~~~ve~r~~ 80 (80)
T PRK03094 57 KGSVITASGLTADEICQQVESRLQ 80 (80)
T ss_pred CCcEEEcCCCCHHHHHHHHHHhhC
Confidence 378999999999999999999984
No 25
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=88.10 E-value=0.76 Score=41.94 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=39.6
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeE
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFY 278 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y 278 (328)
|...|+|..+|+|.+|..|.+-.-+....-+.+... .+..+ +=+...||+||++.- ..+.||.|
T Consensus 29 l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~f-lRG~~~TD~~G~~~F-----~TI~PG~Y 99 (188)
T cd03457 29 LDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETF-LRGVQPTDADGVVTF-----TTIFPGWY 99 (188)
T ss_pred EEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCc-CEEEEEECCCccEEE-----EEECCCCC
Confidence 568999999999999999988544332211222111 11222 346679999999863 13456655
No 26
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=87.63 E-value=1.1 Score=39.96 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=43.9
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEe
Q 020289 205 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 283 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 283 (328)
...+++.-|| -.|+|.+|..|.+...+.. ......-.+..||++|++.-.+ -.+|.|-|...
T Consensus 149 ~g~~~~~~vl--~~GkPl~~a~V~~~~~~~~----------~~~~~~~~~~~TD~~G~~~~~~-----~~~G~wli~a~ 210 (215)
T PF10670_consen 149 AGDPLPFQVL--FDGKPLAGAEVEAFSPGGW----------YDVEHEAKTLKTDANGRATFTL-----PRPGLWLIRAS 210 (215)
T ss_pred CCCEEEEEEE--ECCeEcccEEEEEEECCCc----------cccccceEEEEECCCCEEEEec-----CCCEEEEEEEE
Confidence 4467888998 8999999999999765421 0111114578999999997433 25899988653
No 27
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=87.50 E-value=1.3 Score=44.14 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
...|+-+|.|. +|.|.+|..|.+.... ...+||.||+.. . .+.+|.|+|++.-.
T Consensus 295 ~~~i~G~V~d~-~g~pv~~A~V~v~~~~-------------------~~~~td~~G~y~-~-----~l~~G~Y~l~vs~~ 348 (372)
T cd03868 295 HIGVKGFVRDA-SGNPIEDATIMVAGID-------------------HNVTTAKFGDYW-R-----LLLPGTYTITAVAP 348 (372)
T ss_pred CCceEEEEEcC-CCCcCCCcEEEEEecc-------------------cceEeCCCceEE-e-----cCCCEEEEEEEEec
Confidence 35689999999 7999999999985321 126999999984 2 25699999999877
Q ss_pred CCC
Q 020289 286 KYC 288 (328)
Q Consensus 286 ~Yf 288 (328)
.|=
T Consensus 349 Gf~ 351 (372)
T cd03868 349 GYE 351 (372)
T ss_pred CCC
Confidence 664
No 28
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.02 E-value=1.3 Score=41.66 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=57.8
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCC-CCccCC---CCceEEEEEEeCCCCCcCCCC--CCccCCCCe------
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPL-FGETDV---SGWVYQGSSTTNKDGRCGQLM--GMIEDLNPG------ 276 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~-~~~~~~---~~~~~l~~~~Td~DGR~~~~~--~~~~~~~~G------ 276 (328)
|+-+|||+. |+|.+|..|++-.-+..+ +=. ..+... ..|...+...||++||..-.. +..-+..-+
T Consensus 75 l~G~VlD~~-G~Pv~~A~VEiWQAda~G-rY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~~~R~ 152 (226)
T COG3485 75 LEGRVLDGN-GRPVPDALVEIWQADADG-RYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGPMWRP 152 (226)
T ss_pred EEEEEECCC-CCCCCCCEEEEEEcCCCC-cccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCCcCcc
Confidence 567899998 999999999986544321 100 011111 235678899999999986432 111111111
Q ss_pred -e---------EEEEEeeCCCCC-CCCCceeEEEEEeec
Q 020289 277 -F---------YKITFNTGKYCP-EGFFPYVSIVFEIRE 304 (328)
Q Consensus 277 -~---------Y~l~F~tg~Yf~-~~F~p~V~v~F~i~~ 304 (328)
. +..++.|-=||. ++-+..=+|.+.|++
T Consensus 153 aHih~~v~~~g~~~~L~TqlYf~dd~~~~~dpi~~~v~~ 191 (226)
T COG3485 153 AHIHFSVFARGINTRLVTQLYFPDDPANARDPILALVPD 191 (226)
T ss_pred ceeEEEEeCCcccceEEEEEecCCChhhccCchhcccCc
Confidence 1 234567778888 556777788888875
No 29
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=85.70 E-value=2.3 Score=39.84 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.3
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcC
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~ 264 (328)
|+.+|+| ..|+|.+|..|++..-+..+ .|.+. ....+..-+...||+|||..
T Consensus 68 l~G~V~D-~~G~PV~~A~VEIWQad~~G---~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~ 126 (220)
T cd03464 68 VHGRVLD-EDGRPVPNTLVEIWQANAAG---RYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYR 126 (220)
T ss_pred EEEEEEC-CCCCCCCCCEEEEEecCCCC---cccCccCCcccccCCCCCCEEEEEECCCccEE
Confidence 4577999 58999999999986544321 12111 12234445778999999975
No 30
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=85.23 E-value=2.2 Score=37.04 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=40.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEE
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 279 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 279 (328)
.|+..|+|. .|+|.+|..|++..-+..+.-+.+... ....+..-+...||+||+..- ..+.||.|.
T Consensus 13 ~l~G~V~D~-~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f-----~ti~Pg~Y~ 79 (146)
T cd00421 13 TLTGTVLDG-DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRF-----RTIKPGPYP 79 (146)
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEE-----EEEcCCCCC
Confidence 467889998 688999988888554332100111100 022344567789999999863 235677777
No 31
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.92 E-value=1.7 Score=40.66 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=34.3
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcC
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~ 264 (328)
|+-+|+|. .|+|.+|..|++..-+... -|.+. .+..+..-+...||+|||..
T Consensus 63 l~G~V~D~-~g~PV~~A~VEIWQada~G---~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~ 121 (220)
T TIGR02422 63 VHGRVLDE-DGRPVPNTLVEVWQANAAG---RYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYR 121 (220)
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCC---cccCccCccccccCCCCCCEEEEEECCCccEE
Confidence 45689997 5999999999986544321 11111 12234446778999999975
No 32
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=84.65 E-value=1.9 Score=38.32 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=34.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC-------CCCceEEEEEEeCCCCCcCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD-------VSGWVYQGSSTTNKDGRCGQ 265 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~-------~~~~~~l~~~~Td~DGR~~~ 265 (328)
-|+-.|+| ..|.|.+|..|++..-+... -|.+.. +.....-+...||+|||..-
T Consensus 17 ~l~g~V~D-~~g~Pv~~A~veiWqad~~G---~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f 77 (158)
T cd03459 17 ILEGRVLD-GDGRPVPDALVEIWQADAAG---RYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRF 77 (158)
T ss_pred EEEEEEEC-CCCCCCCCCEEEEEccCCCC---ccCCccCCcccccCCCCCceeEEEECCCCcEEE
Confidence 36678999 58999999999986544321 111111 12233346789999999863
No 33
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=84.19 E-value=2.2 Score=42.86 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
...|.-+|.|. +|.|.+|..|++.... .....+||.+|+-- . .+.||.|.|++.-.
T Consensus 294 ~~gI~G~V~D~-~g~pi~~A~V~v~g~~-----------------~~~~~~T~~~G~y~--~----~l~pG~Y~v~vsa~ 349 (376)
T cd03866 294 HLGVKGQVFDS-NGNPIPNAIVEVKGRK-----------------HICPYRTNVNGEYF--L----LLLPGKYMINVTAP 349 (376)
T ss_pred cCceEEEEECC-CCCccCCeEEEEEcCC-----------------ceeEEEECCCceEE--E----ecCCeeEEEEEEeC
Confidence 34689999997 6999999999985311 12245899999882 2 25799999999977
Q ss_pred CCC
Q 020289 286 KYC 288 (328)
Q Consensus 286 ~Yf 288 (328)
.|=
T Consensus 350 Gy~ 352 (376)
T cd03866 350 GFK 352 (376)
T ss_pred Ccc
Confidence 763
No 34
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=83.85 E-value=1.5 Score=39.84 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=36.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEE
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l 280 (328)
-|..+|+|+ .|+|.+|..|++..-+....-..+... ....+..-+...||+|||..- ..+.||.|.+
T Consensus 31 ~l~G~V~D~-~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f-----~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 31 VLHGRVIDT-DGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSF-----RTIKPGPYPI 98 (183)
T ss_dssp EEEEEEEET-TSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEE-----EEE----EEE
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEE-----EeeCCCCCCC
Confidence 367889996 699999999998665433211111111 112334458889999998852 1244566653
No 35
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=83.27 E-value=1.9 Score=42.78 Aligned_cols=55 Identities=31% Similarity=0.412 Sum_probs=43.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
.|+-+|.|. .|.|.+|..|.+... + ....||.||+..- . +.+|.|+|++.-..|
T Consensus 299 ~i~G~V~d~-~g~pl~~A~V~i~~~----------------~---~~~~Td~~G~f~~-~-----l~~G~y~l~vs~~Gy 352 (374)
T cd03858 299 GIKGFVRDA-NGNPIANATISVEGI----------------N---HDVTTAEDGDYWR-L-----LLPGTYNVTASAPGY 352 (374)
T ss_pred ceEEEEECC-CCCccCCeEEEEecc----------------e---eeeEECCCceEEE-e-----cCCEeEEEEEEEcCc
Confidence 699999998 699999999998321 1 2368999999962 1 458999999987766
Q ss_pred C
Q 020289 288 C 288 (328)
Q Consensus 288 f 288 (328)
-
T Consensus 353 ~ 353 (374)
T cd03858 353 E 353 (374)
T ss_pred c
Confidence 4
No 36
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=82.68 E-value=4.4 Score=35.27 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=45.3
Q ss_pred eccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCC
Q 020289 213 VLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 288 (328)
Q Consensus 213 VLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 288 (328)
||=--.|+|.+|..|.|.....++ .=--...++..|+++|+-. -.+.||.|++...++.|.
T Consensus 8 vL~dg~G~pv~g~~I~L~A~~tS~---------~Vv~~t~as~~t~~~G~Ys------~~~epG~Y~V~l~~~g~~ 68 (134)
T PF08400_consen 8 VLKDGAGKPVPGCTITLKARRTSS---------TVVVGTVASVVTGEAGEYS------FDVEPGVYRVTLKVEGRP 68 (134)
T ss_pred EEeCCCCCcCCCCEEEEEEccCch---------heEEEEEEEEEcCCCceEE------EEecCCeEEEEEEECCCC
Confidence 455568999999999998765320 0112357788999999764 246799999999998885
No 37
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=82.52 E-value=2.6 Score=42.37 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=44.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|.-.|.|..+|.|..|..|.+..... ..+||.||...- .+.||+|.|++.--.
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~~-------------------~~~Td~~G~f~~------~l~pG~ytl~vs~~G 351 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADINH-------------------PVTTYKDGDYWR------LLVPGTYKVTASARG 351 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCcC-------------------ceEECCCccEEE------ccCCeeEEEEEEEcC
Confidence 4688999999999999999999853211 268999998852 256999999988766
Q ss_pred CC
Q 020289 287 YC 288 (328)
Q Consensus 287 Yf 288 (328)
|=
T Consensus 352 Y~ 353 (375)
T cd03863 352 YD 353 (375)
T ss_pred cc
Confidence 64
No 38
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=81.79 E-value=2.1 Score=41.65 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=35.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|+ .|+|.+|..|++..-+... .|++.+ ...+..-+...||+|||..
T Consensus 130 ~v~G~V~D~-~G~PI~gA~VeIWqad~~G---~Ys~~~~~~~~~~lRG~~~TD~~G~y~ 184 (285)
T TIGR02439 130 FLHGQVTDA-DGKPIAGAKVELWHANTKG---NYSHFDKSQSEFNLRRTIITDAEGRYR 184 (285)
T ss_pred EEEEEEECC-CCCCcCCcEEEEEccCCCC---CcCCCCCCCCCCCceEEEEECCCCCEE
Confidence 367899996 5999999999986544321 122111 2344456788999999964
No 39
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=81.62 E-value=2.3 Score=40.80 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=36.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc--CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET--DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~--~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|+ .|+|.+|..|++..-+... .|.+. ....+..-+...||+|||..
T Consensus 106 ~l~G~V~D~-~G~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~lRG~~~Td~~G~y~ 160 (256)
T cd03458 106 FVHGTVTDT-DGKPLAGATVDVWHADPDG---FYSQQDPDQPEFNLRGKFRTDEDGRYR 160 (256)
T ss_pred EEEEEEEcC-CCCCCCCcEEEEEccCCCC---CcCCCCCCCCCCCCEEEEEeCCCCCEE
Confidence 467899997 6999999999886544321 12111 12345566788999999964
No 40
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.51 E-value=2.8 Score=38.42 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=34.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC-------CCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD-------VSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~-------~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+-+|+|. .|+|.+|..|++-.-+... -|.+.. +..+..-+...||+||+..
T Consensus 41 ~l~G~V~D~-~g~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~ 100 (193)
T TIGR02423 41 RLEGRVLDG-DGHPVPDALIEIWQADAAG---RYNSPADLRAPATDPGFRGWGRTGTDESGEFT 100 (193)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEccCCCC---ccCCccCCcccccCCCCCCeEEEEECCCCCEE
Confidence 367889996 6999999999986543321 121111 1233344667999999975
No 41
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=80.57 E-value=2.6 Score=40.89 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=35.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc--CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET--DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~--~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|+ .|+|.+|..|++..-+..+ .|++. ....+..=+...||+|||..
T Consensus 134 ~v~G~V~D~-~G~Pv~gA~VdiWqada~G---~Ys~~~~~~~~~~lRGr~~TDadG~y~ 188 (281)
T TIGR02438 134 VFSGQVTDL-DGNGLAGAKVELWHADDDG---FYSQFAPGIPEWNLRGTIIADDEGRFE 188 (281)
T ss_pred EEEEEEEcC-CCCCcCCCEEEEEecCCCC---CcCCCCCCCCCCCCeEEEEeCCCCCEE
Confidence 467889996 5999999999986543321 12211 12334445788999999964
No 42
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=79.79 E-value=2.8 Score=33.97 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=37.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEE--EEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQG--SSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~--~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
..|+..|.| ..|.|.+|+.|.+..-.. .....-. ...||++|...--+. .-.+|.|.++-..
T Consensus 25 ~tltatV~D-~~gnpv~g~~V~f~~~~~------------~~~l~~~~~~~~Td~~G~a~~tlt---st~aG~~~VtA~~ 88 (100)
T PF02369_consen 25 NTLTATVTD-ANGNPVPGQPVTFSSSSS------------GGTLSPTNTSATTDSNGIATVTLT---STKAGTYTVTATV 88 (100)
T ss_dssp EEEEEEEEE-TTSEB-TS-EEEE--EES------------SSEES-CEE-EEE-TTSEEEEEEE----SS-EEEEEEEEE
T ss_pred EEEEEEEEc-CCCCCCCCCEEEEEEcCC------------CcEEecCccccEECCCEEEEEEEE---ecCceEEEEEEEE
Confidence 568999999 569999999999822111 1111111 479999999864332 3378999998765
Q ss_pred C
Q 020289 285 G 285 (328)
Q Consensus 285 g 285 (328)
.
T Consensus 89 ~ 89 (100)
T PF02369_consen 89 D 89 (100)
T ss_dssp T
T ss_pred C
Confidence 4
No 43
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=79.76 E-value=2.4 Score=41.15 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=35.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|+ .|+|.+|..|++..-+....-..+.. ....+..-+...||+|||..
T Consensus 126 ~l~G~V~D~-~G~PI~~A~VeiWqad~~G~Ys~~~~-~~~~f~~RGr~~TD~~G~y~ 180 (282)
T cd03460 126 VMHGTVTDT-DGKPVPGAKVEVWHANSKGFYSHFDP-TQSPFNLRRSIITDADGRYR 180 (282)
T ss_pred EEEEEEECC-CCCCcCCcEEEEECCCCCCCcCCCCC-CCCCCCCceEEEeCCCCCEE
Confidence 356889996 69999999999865443221111111 11344456778999999964
No 44
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=79.37 E-value=2.8 Score=39.97 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.0
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc--CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET--DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~--~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+| ..|+|.+|..|++..-+..+ .|.+. ....+..=+...||+|||..
T Consensus 100 ~v~G~V~D-~~G~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~lRG~~~Td~~G~y~ 154 (246)
T TIGR02465 100 LIRGTVRD-LSGTPVAGAVIDVWHSTPDG---KYSGFHDNIPDDYYRGKLVTAADGSYE 154 (246)
T ss_pred EEEEEEEc-CCCCCcCCcEEEEECCCCCC---CCCCCCCCCCCCCCeEEEEECCCCCEE
Confidence 46788999 58999999999986543321 12211 11223344788999999975
No 45
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=77.15 E-value=2.4 Score=31.36 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=37.4
Q ss_pred CCCEEEEEEecCCCCCCCCCccCCCCceEEE--EEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC-CCCCCCCceeEEE
Q 020289 223 AGVEVRLEMWKGIQPRPLFGETDVSGWVYQG--SSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK-YCPEGFFPYVSIV 299 (328)
Q Consensus 223 agv~V~L~~~~~~~~~~~~~~~~~~~~~~l~--~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~-Yf~~~F~p~V~v~ 299 (328)
+|+.+.|+..++ - .+. +.+||+||.+.- ..+.+|.|+|+.-... -| -...-.+.
T Consensus 2 ~Ga~f~L~~~~~--------------~-~~~~~~~~Td~~G~~~f-----~~L~~G~Y~l~E~~aP~GY---~~~~~~~~ 58 (70)
T PF05738_consen 2 AGATFELYDEDG--------------N-EVIEVTVTTDENGKYTF-----KNLPPGTYTLKETKAPDGY---QLDDTPYE 58 (70)
T ss_dssp STEEEEEEETTS--------------E-EEEEEEEEGGTTSEEEE-----EEEESEEEEEEEEETTTTE---EEEECEEE
T ss_pred CCeEEEEEECCC--------------C-EEEEEEEEECCCCEEEE-----eecCCeEEEEEEEECCCCC---EECCCceE
Confidence 688999976432 1 222 589999998742 3467999999987721 11 12233445
Q ss_pred EEeec
Q 020289 300 FEIRE 304 (328)
Q Consensus 300 F~i~~ 304 (328)
|.|..
T Consensus 59 ~~i~~ 63 (70)
T PF05738_consen 59 FTITE 63 (70)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 66655
No 46
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=76.75 E-value=2.6 Score=33.53 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.3
Q ss_pred eEEEEecCCCHHHHHHHHHHHhc
Q 020289 107 IFIICASGRTAAEILAELKKRYT 129 (328)
Q Consensus 107 pFVIcv~g~s~~eIL~~l~~Rl~ 129 (328)
..||=|+|+|++||...+++||+
T Consensus 58 ~pVInA~G~T~eEI~~~v~~rl~ 80 (80)
T PF03698_consen 58 VPVINASGLTAEEIVQEVEERLQ 80 (80)
T ss_pred ceEEecCCCCHHHHHHHHHHhhC
Confidence 37999999999999999999985
No 47
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=74.64 E-value=4.6 Score=38.53 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC--CCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD--VSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~--~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+... .|.+.. ...+..=+...||+|||..
T Consensus 101 ~l~G~V~D~-~G~Pv~~A~VeiWqad~~G---~Y~~~~~~~~~~~~RG~~~Td~~G~y~ 155 (247)
T cd03462 101 LFRGTVKDL-AGAPVAGAVIDVWHSTPDG---KYSGFHPNIPEDYYRGKIRTDEDGRYE 155 (247)
T ss_pred EEEEEEEcC-CCCCcCCcEEEEECCCCCC---CcCCCCCCCCCCCCEEEEEeCCCCCEE
Confidence 467889996 7999999999986543321 122111 1234445678999999974
No 48
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=73.53 E-value=7 Score=39.58 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|.-+|.|. .|.|..|..|.+.... ...+||.+|.- |. .+.||.|.|++.--.
T Consensus 316 ~gI~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~T~~~G~y--~r----~l~pG~Y~l~vs~~G 369 (392)
T cd03864 316 QGIKGMVTDE-NNNGIANAVISVSGIS-------------------HDVTSGTLGDY--FR----LLLPGTYTVTASAPG 369 (392)
T ss_pred CeEEEEEECC-CCCccCCeEEEEECCc-------------------cceEECCCCcE--Ee----cCCCeeEEEEEEEcC
Confidence 3688899996 5999999999985321 12689999977 32 256899999988766
Q ss_pred CC
Q 020289 287 YC 288 (328)
Q Consensus 287 Yf 288 (328)
|-
T Consensus 370 y~ 371 (392)
T cd03864 370 YQ 371 (392)
T ss_pred ce
Confidence 64
No 49
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=73.44 E-value=3.3 Score=29.76 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEe
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMW 232 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~ 232 (328)
+|+.||.|. .|.|.++..+.|.+-
T Consensus 16 ~ltVt~kda-~G~pv~n~~f~l~r~ 39 (47)
T PF05688_consen 16 PLTVTVKDA-NGNPVPNAPFTLTRG 39 (47)
T ss_pred EEEEEEECC-CCCCcCCceEEEEec
Confidence 599999999 999999999999874
No 50
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=73.17 E-value=4.9 Score=38.94 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=35.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc--CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET--DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~--~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|+ .|+|.+|..|++..-+... .|.+. +...+..-+...||+|||..
T Consensus 122 ~v~G~V~D~-~G~Pv~gA~VeiWqad~~G---~Y~~~~~~~~~~~lRGr~~Td~~G~y~ 176 (277)
T cd03461 122 FVHGRVTDT-DGKPLPGATVDVWQADPNG---LYDVQDPDQPEFNLRGKFRTDEDGRYA 176 (277)
T ss_pred EEEEEEEcC-CCCCcCCcEEEEECcCCCC---CcCCCCCCCCCCCCeEEEEeCCCCCEE
Confidence 467889996 6999999999885543221 12211 11345556788999999964
No 51
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=72.38 E-value=9.4 Score=30.12 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=46.0
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
..-|+..|+|- .|.|.+|..|++..-.+. ...++ -....||.+||+.-.+. .-.+|.|.++....
T Consensus 19 ~~~i~v~v~D~-~Gnpv~~~~V~f~~~~~~--~~~~~---------~~~~~Td~~G~a~~~l~---~~~~G~~~vta~~~ 83 (92)
T smart00634 19 AITLTATVTDA-NGNPVAGQEVTFTTPSGG--ALTLS---------KGTATTDANGIATVTLT---STTAGVYTVTASLE 83 (92)
T ss_pred cEEEEEEEECC-CCCCcCCCEEEEEECCCc--eeecc---------CCeeeeCCCCEEEEEEE---CCCCcEEEEEEEEC
Confidence 46799999996 699999999888653210 00000 13458999999976553 34789999988766
Q ss_pred CC
Q 020289 286 KY 287 (328)
Q Consensus 286 ~Y 287 (328)
.+
T Consensus 84 ~~ 85 (92)
T smart00634 84 NG 85 (92)
T ss_pred CC
Confidence 54
No 52
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=71.33 E-value=6.1 Score=39.52 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|+-+|.|. +|.|..|..|.+... . ..+||.+|...-+ +.||.|+|++.--.
T Consensus 287 ~gI~G~V~d~-~g~pi~~A~V~v~g~---------------~-----~~~T~~~G~y~~~------L~pG~y~v~vs~~G 339 (363)
T cd06245 287 KGVHGVVTDK-AGKPISGATIVLNGG---------------H-----RVYTKEGGYFHVL------LAPGQHNINVIAEG 339 (363)
T ss_pred cEEEEEEEcC-CCCCccceEEEEeCC---------------C-----ceEeCCCcEEEEe------cCCceEEEEEEEeC
Confidence 4588999997 799999999998421 1 3579999977522 56899999998877
Q ss_pred CCC
Q 020289 287 YCP 289 (328)
Q Consensus 287 Yf~ 289 (328)
|-.
T Consensus 340 y~~ 342 (363)
T cd06245 340 YQQ 342 (363)
T ss_pred cee
Confidence 763
No 53
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=71.22 E-value=6.5 Score=39.69 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=42.9
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|+-+|+|. .|.|..|..|.+.... ...+||.+|.... .+.+|.|.|++.--.
T Consensus 318 ~~i~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~Td~~G~y~~------~l~~G~y~l~vs~~G 371 (395)
T cd03867 318 RGIKGFVKDK-DGNPIKGARISVRGIR-------------------HDITTAEDGDYWR------LLPPGIHIVSAQAPG 371 (395)
T ss_pred ceeEEEEEcC-CCCccCCeEEEEeccc-------------------cceEECCCceEEE------ecCCCcEEEEEEecC
Confidence 3588999996 5999999999985321 1368999998842 256899999998776
Q ss_pred CC
Q 020289 287 YC 288 (328)
Q Consensus 287 Yf 288 (328)
|-
T Consensus 372 y~ 373 (395)
T cd03867 372 YT 373 (395)
T ss_pred ee
Confidence 64
No 54
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=69.98 E-value=6 Score=37.06 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=44.1
Q ss_pred CCCceeeeccCCCCCCCC----CCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEE
Q 020289 206 RLPITTHVLDVSQGSPAA----GVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 281 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAa----gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 281 (328)
.+.|+-+|+|..+|.|.. |++++|+..+ |+.+.. -.-....||--.. ..+=+|.|+|+
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~g-------y~~~~~------~~~~v~qDGtf~n-----~~lF~G~Yki~ 82 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELG-------YGDNTP------QDVYVKQDGTFRN-----TKLFDGDYKIV 82 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS--------CCG--S------EEEEB-TTSEEEE-----EEE-SEEEEEE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecc-------cccCCC------cceEEccCCceee-----eeEeccceEEE
Confidence 356999999999998754 8888887542 332211 1236788886632 12347999999
Q ss_pred EeeCCC-CCCCCCceeEEEEEee
Q 020289 282 FNTGKY-CPEGFFPYVSIVFEIR 303 (328)
Q Consensus 282 F~tg~Y-f~~~F~p~V~v~F~i~ 303 (328)
+.-|.+ |. +|.=+|.+.|+
T Consensus 83 ~~~G~fp~~---~~~dti~v~i~ 102 (222)
T PF12866_consen 83 PKNGNFPWV---VPVDTIEVDIK 102 (222)
T ss_dssp E-CTSCSBS---CCE--EEEEES
T ss_pred EcCCCCccc---CCCccEEEEec
Confidence 988887 21 34444445554
No 55
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=68.60 E-value=22 Score=30.08 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=42.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEE
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITF 282 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 282 (328)
..++.++.| ..|.|..+..++|...... +.....-..-...++|+-...+ ....+|.|.|+.
T Consensus 69 ~~~~i~~~d-~~g~~~~~~~~~l~l~rp~----------~~~~D~~~~l~~~~~g~y~~~~---~~~~~G~W~l~l 130 (146)
T PF05751_consen 69 NSLTIRLTD-PNGAPVSGAKLTLSLYRPT----------DAKLDFTLTLTESAPGVYRAPV---PLLKKGRWYLRL 130 (146)
T ss_pred CeEEEEEEc-CCCCcCcCceEEEEEECCC----------CccCCeeEEeeECCCceEEEEc---CCCCCccEEEEE
Confidence 579999999 9999999999998776532 1122122233367888776543 234789999988
No 56
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=63.98 E-value=38 Score=26.53 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=36.1
Q ss_pred cCCC-CCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEE-EeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 215 DVSQ-GSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSS-TTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 215 Dt~~-G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~-~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
|... ..|..+.+|.+...+.. +.-..-... .+|.+|....-+...+....|.|+|+..++
T Consensus 25 ~~~~~~~~~~~~~~~v~i~dp~-----------g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 25 DLDNDFKPPANSPVTVTIKDPS-----------GNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EECTTCSCESSEEEEEEEEETT-----------SEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ccccccccccCCceEEEEECCC-----------CCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 5552 56788888888776532 121122333 568999887544445667889999999995
No 57
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=63.39 E-value=13 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 253 GSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 253 ~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
.-+.||+||+..- +.+.||.|+|.-..
T Consensus 42 Ywt~td~~G~Fti-----~~V~pGtY~L~ay~ 68 (95)
T PF14686_consen 42 YWTRTDSDGNFTI-----PNVRPGTYRLYAYA 68 (95)
T ss_dssp EEEE--TTSEEE--------B-SEEEEEEEEE
T ss_pred EEEEeCCCCcEEe-----CCeeCcEeEEEEEE
Confidence 3478999998852 45789999999888
No 58
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=62.70 E-value=19 Score=37.54 Aligned_cols=72 Identities=28% Similarity=0.352 Sum_probs=50.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
.|.-=|.| .+|+|.++..|++..++- .-+|..+|-- | .-+.||.|.|++....|
T Consensus 379 GIkG~V~D-~~G~~I~NA~IsV~ginH-------------------dv~T~~~GDY--W----RLL~PG~y~vta~A~Gy 432 (500)
T KOG2649|consen 379 GIKGLVFD-DTGNPIANATISVDGINH-------------------DVTTAKEGDY--W----RLLPPGKYIITASAEGY 432 (500)
T ss_pred ccceeEEc-CCCCccCceEEEEecCcC-------------------ceeecCCCce--E----EeeCCcceEEEEecCCC
Confidence 45555999 999999999999876542 1467777733 2 12569999999999999
Q ss_pred CC------CCCCceeEEEEEeecC
Q 020289 288 CP------EGFFPYVSIVFEIRES 305 (328)
Q Consensus 288 f~------~~F~p~V~v~F~i~~~ 305 (328)
-+ -++-...-|.|.+...
T Consensus 433 ~~~tk~v~V~~~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 433 DPVTKTVTVPPDRAARVNFTLQRS 456 (500)
T ss_pred cceeeEEEeCCCCccceeEEEecC
Confidence 97 1234555666777653
No 59
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=60.14 E-value=17 Score=37.11 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=42.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
.|+-+|.|. .|.|.+|..|.+...+. ..+||.+|--.- .+.||.|+|+..-..|
T Consensus 327 gI~G~V~D~-~g~pI~~AtV~V~g~~~-------------------~~~T~~~G~Y~~------~L~pG~Ytv~vsa~Gy 380 (402)
T cd03865 327 GVKGFVKDL-QGNPIANATISVEGIDH-------------------DITSAKDGDYWR------LLAPGNYKLTASAPGY 380 (402)
T ss_pred ceEEEEECC-CCCcCCCeEEEEEcCcc-------------------ccEECCCeeEEE------CCCCEEEEEEEEecCc
Confidence 499999996 69999999999864321 147999997752 2568999999988877
Q ss_pred C
Q 020289 288 C 288 (328)
Q Consensus 288 f 288 (328)
-
T Consensus 381 ~ 381 (402)
T cd03865 381 L 381 (402)
T ss_pred c
Confidence 5
No 60
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=53.70 E-value=7 Score=29.16 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=27.0
Q ss_pred cCCHHHHHHhhC-CHHHHHHHHhcC----CCCCHHHHH
Q 020289 7 VLDEEELLGCCG-STKFAKEMASAS----PFASLNQAV 39 (328)
Q Consensus 7 ~m~~~~f~~~~g-sp~~A~~~~~~R----PF~s~~~L~ 39 (328)
+.+.+++....| ++..|+++...| ||.|+++|.
T Consensus 10 ~as~~eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~ 47 (65)
T PF12836_consen 10 TASAEELQALPGIGPKQAKAIVEYREKNGPFKSLEDLK 47 (65)
T ss_dssp TS-HHHHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGG
T ss_pred cCCHHHHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHh
Confidence 478889988878 899999999999 999999996
No 61
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=50.46 E-value=25 Score=30.61 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=37.0
Q ss_pred cCCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC
Q 020289 7 VLDEEELLGCCG-STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP 63 (328)
Q Consensus 7 ~m~~~~f~~~~g-sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP 63 (328)
+++.++|..+-| -|..|+++....||.|+++|.. +....+ .+.+.|+.+-
T Consensus 57 ~A~~~el~~lpGigP~~A~~IV~nGpf~sveDL~~------V~GIge-kqk~~l~k~~ 107 (132)
T PRK02515 57 NSSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN------LPGLSE-RQKELLEANL 107 (132)
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHc------CCCCCH-HHHHHHHHhh
Confidence 478888888778 7999999999999999999973 233433 3445555554
No 62
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=50.41 E-value=43 Score=27.03 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=40.7
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
-|+--|+ ..|.|.+|=-|+|- + ++-+..++-.|.+.|...-.. .||.|.++--+
T Consensus 9 VItG~V~--~~G~Pv~gAyVRLL--D-------------~sgEFtaEvvts~~G~FRFfa------apG~WtvRal~ 62 (85)
T PF07210_consen 9 VITGRVT--RDGEPVGGAYVRLL--D-------------SSGEFTAEVVTSATGDFRFFA------APGSWTVRALS 62 (85)
T ss_pred EEEEEEe--cCCcCCCCeEEEEE--c-------------CCCCeEEEEEecCCccEEEEe------CCCceEEEEEc
Confidence 3666777 89999999999984 2 233457899999999887433 48899887654
No 63
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=50.15 E-value=37 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHH
Q 020289 92 ELSDWNNRYRLRF--GFIFIICASGRTAAEILAELKKRYTNRPIIEFEIA 139 (328)
Q Consensus 92 ~L~~lN~~Y~eKF--GfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~A 139 (328)
...+.=+.|.+++ |.|||++-.--...-+++.|++++..++-..+-+|
T Consensus 79 DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~rLVA 128 (207)
T PF11288_consen 79 DVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDPLRKRLVA 128 (207)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCchHHhhhhe
Confidence 3333446788888 99999998888888999999999998885444433
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.55 E-value=1.3e+02 Score=26.42 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=68.3
Q ss_pred cCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC------------CCcccHHHhhHhhcCCCHHHHHHHHHH
Q 020289 29 ASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP------------SSQWSKAEQSTALATANESSSQELSDW 96 (328)
Q Consensus 29 ~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~------------~s~~S~~EQs~al~~~s~~~~~~L~~l 96 (328)
.||| |+.++.+.+... +..+-...-|+-|...-.|-.+. .......|+-..++.--.+..+++..|
T Consensus 14 NRPy-s~~di~~nL~~~-~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l 91 (169)
T PF07106_consen 14 NRPY-SAQDIFDNLHNK-VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAEL 91 (169)
T ss_pred CCCC-cHHHHHHHHHhh-ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 6999 677788777765 35555666678888888777665 011112333332221112222344444
Q ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 020289 97 NNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAK 160 (328)
Q Consensus 97 N~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~~~~ 160 (328)
...+. ....=|..|...+.|+.-.+....+.+-.+.-..||..|-++..+
T Consensus 92 ~~~~k--------------~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 92 KKEVK--------------SLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHH--------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44443 234556666666666666666666666677778999999875444
No 65
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=49.36 E-value=32 Score=24.42 Aligned_cols=31 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCHHHHHHHH-----HHHHHHHHhcCCeEEEEecCC
Q 020289 85 ANESSSQELS-----DWNNRYRLRFGFIFIICASGR 115 (328)
Q Consensus 85 ~s~~~~~~L~-----~lN~~Y~eKFGfpFVIcv~g~ 115 (328)
||++|+.+|. ..-.+--.+.|+||++.+.|+
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECCCCC
Confidence 4666776664 334455667899999999997
No 66
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=48.34 E-value=29 Score=32.53 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=37.3
Q ss_pred HHHHHHhcCCeEEEEecCCC------HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 020289 97 NNRYRLRFGFIFIICASGRT------AAEILAELKKRYTNRPIIEFEIAAQEQMKITELRL 151 (328)
Q Consensus 97 N~~Y~eKFGfpFVIcv~g~s------~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL 151 (328)
|-.-.+||+|||||+..-.| +.+|.+..+ =+ .=...|...++.+...|..-||
T Consensus 158 ~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~-~i-Gme~~ea~~~Ls~~p~~i~~~~ 216 (216)
T PRK03892 158 AWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGI-NI-GMEIPQAKASLSFYPRIILKRL 216 (216)
T ss_pred HHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHH-Hh-CCCHHHHHHHHHHhHHHHhhcC
Confidence 66778999999999998654 455544332 22 3346788888888888876664
No 67
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=43.26 E-value=17 Score=34.59 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCC-------hHHHHHHHHH
Q 020289 86 NESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNR-------PIIEFEIAAQ 141 (328)
Q Consensus 86 s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~-------~~~E~~~Al~ 141 (328)
.-+.+.++..+-..=+.|=|||=+|++.|++.++|.+.++.=+... -+.|...++.
T Consensus 28 ~~~~~~~~~k~D~~R~~RtG~pEvv~a~gKt~eqi~~i~~~~~~~~~~~l~tR~~~e~~~~l~ 90 (254)
T COG1691 28 AFESLGEFAKLDIHREKRTGFPEVVFAPGKTPEQIVEIVEVLLEKNGIALATRVSPELLEALK 90 (254)
T ss_pred hhhhhchhhhccchhhccCCCceEeecCCCCHHHHHHHHHHHHHcCCeeeeecCCHHHHHHhh
Confidence 4445566666666666777999999999999999988888776643 3556555553
No 68
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=40.87 E-value=68 Score=38.43 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 265 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 265 (328)
...+..+|--..+|+|.+|++|.+...+ .+.+.+++||++|++.-
T Consensus 304 ~~~l~v~v~sl~sg~P~~g~~v~~~~~n---------------gevl~~~~tds~G~~~~ 348 (1621)
T COG2373 304 HDGLDVFVQSLSSGKPVPGVEVSVLAGN---------------GEVLVSGTTDSQGHAKF 348 (1621)
T ss_pred cccEEEEEEeccCCCCCCCcEEEEEecC---------------CcEEeeeEEccccceec
Confidence 4457888999999999999999986432 34689999999998864
No 69
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=40.54 E-value=58 Score=33.30 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=39.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
.|--=|.|. +|.|.+|-.|.+..++. .-+|..+|--=. -+.||.|+|+.....|
T Consensus 330 GikG~V~d~-~g~~i~~a~i~v~g~~~-------------------~v~t~~~GdywR------ll~pG~y~v~~~a~gy 383 (405)
T cd03869 330 GIKGVVRDK-TGKGIPNAIISVEGINH-------------------DIRTASDGDYWR------LLNPGEYRVTAHAEGY 383 (405)
T ss_pred CceEEEECC-CCCcCCCcEEEEecCcc-------------------ceeeCCCCceEE------ecCCceEEEEEEecCC
Confidence 466669998 99999998887754321 135667774422 2468999999998888
Q ss_pred CC
Q 020289 288 CP 289 (328)
Q Consensus 288 f~ 289 (328)
..
T Consensus 384 ~~ 385 (405)
T cd03869 384 TS 385 (405)
T ss_pred Cc
Confidence 64
No 70
>PF13446 RPT: A repeated domain in UCH-protein
Probab=36.22 E-value=81 Score=23.02 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=32.7
Q ss_pred cCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 020289 113 SGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 154 (328)
Q Consensus 113 ~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L 154 (328)
...+-+.|+...+.++.++| .....+.+-+..|+..|=.+.
T Consensus 15 ~~~~Dd~Ii~~f~~~~~~~P-~~~~~~r~AL~~Ia~~R~S~~ 55 (62)
T PF13446_consen 15 EDTDDDFIISAFQSKVNDDP-SQKDTLREALRVIAESRNSDR 55 (62)
T ss_pred CCCCHHHHHHHHHHHHHcCh-HhHHHHHHHHHHHHHHcCCHH
Confidence 44577889999999999988 577778888888998874443
No 71
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=35.28 E-value=70 Score=25.37 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=26.7
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 218 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 218 ~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
...|.+|+.|.|.-.+. ++.-....++.||.+|...
T Consensus 17 ~~~~l~GA~V~v~C~~~-----------~~~~~~~~~~~Td~~G~F~ 52 (97)
T PF01190_consen 17 AAKPLPGAKVSVECKDG-----------NGGVVFSAEAKTDENGYFS 52 (97)
T ss_pred cCccCCCCEEEEECCCC-----------CCCcEEEEEEEeCCCCEEE
Confidence 46799999999987542 1223668889999999665
No 72
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=34.61 E-value=1.3e+02 Score=24.88 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCCceEEEE--EEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 245 DVSGWVYQGS--STTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 245 ~~~~~~~l~~--~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
+.+.|..+.. -.-|..-|+.-.+| ..+..|.|+|..-|.
T Consensus 46 ~~g~~~~v~~~~i~~N~ps~l~~~lP--a~L~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 46 DEGTETKVPCSSIVRNKPSRLIFILP--ADLAAGEYTLEVRTQ 86 (102)
T ss_pred CCCceEEecHHHeEeCCCcEEEEECc--CccCceEEEEEEEEE
Confidence 4567877764 67788888876664 468999999988773
No 73
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=34.00 E-value=27 Score=34.84 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.0
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCC
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 267 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~ 267 (328)
.-.||||+.+|.|+..-.+.+.. |+...+++||=.+.++
T Consensus 257 ry~HilDP~TG~P~~~~~~sVTV--------------------ia~~~~~ADalaTal~ 295 (337)
T COG1477 257 RYHHILDPKTGYPIEHDLASVTV--------------------IAPSSMDADALATALF 295 (337)
T ss_pred EEeeecCCCCCCCCcCCcceEEE--------------------EcCCcchHHHHHHHHH
Confidence 45799999999999954444433 4445778888655544
No 74
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=33.80 E-value=41 Score=28.89 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=50.0
Q ss_pred CCHHHHHHhhC------CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC---------CCCCCC---
Q 020289 8 LDEEELLGCCG------STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP---------QIGQSP--- 69 (328)
Q Consensus 8 m~~~~f~~~~g------sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP---------~LG~~~--- 69 (328)
|..+|+.+|.| +.|+-+.=|..-|++.+.-=.+... . .+ +...+.|++-| ++.+..
T Consensus 1 MT~eELA~~tG~srQTINrWvRkegW~T~p~pGVkGGrARLI----h-Id-~~V~efi~s~~a~r~~~~~y~~~E~~~~y 74 (122)
T PF07037_consen 1 MTPEELAELTGYSRQTINRWVRKEGWKTEPKPGVKGGRARLI----H-ID-EQVREFIRSIPAFRNRPALYRLAEPPAEY 74 (122)
T ss_pred CCHHHHHHHhCccHHHHHHHHHhcCceeccCCccccccceee----e-ec-HHHHHHHHhhHHHhccchhhhccCCcccc
Confidence 78999999999 7999999999999987632111110 0 11 12234444444 555443
Q ss_pred -CCcccHHH-hh-HhhcCCCHHHHHHHHHH
Q 020289 70 -SSQWSKAE-QS-TALATANESSSQELSDW 96 (328)
Q Consensus 70 -~s~~S~~E-Qs-~al~~~s~~~~~~L~~l 96 (328)
.+..+.-+ |- ..+..+++.|.++|..|
T Consensus 75 ~~~~~~~l~~~ii~~~~~Mt~~EQ~~L~~l 104 (122)
T PF07037_consen 75 AVTWDSPLERQIIDTLEEMTPAEQEQLTSL 104 (122)
T ss_pred CCCCcchHHHHHHHHHHHCCHHHHHHHHHH
Confidence 23334333 43 23667888888888775
No 75
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=31.79 E-value=2.3e+02 Score=25.13 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=49.3
Q ss_pred cHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 020289 74 SKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASG----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKITE 148 (328)
Q Consensus 74 S~~EQs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g----~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~ 148 (328)
|.++=+..++ -.++..+.|.+|++.|.++..=.-|+++.| .++.+....+++-+.......+..|+-|+..|=.
T Consensus 15 s~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalEtLAiIA 92 (159)
T PF04079_consen 15 SIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALETLAIIA 92 (159)
T ss_dssp -HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHHHHHHHH
Confidence 4444444454 234445679999999977773334445554 2888888888888888788999988888766543
No 76
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.61 E-value=33 Score=32.21 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHhhCCCCCCCC-CCcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHH---HHHHHHHHhcCCh
Q 020289 57 DAFSAHPQIGQSP-SSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAE---ILAELKKRYTNRP 132 (328)
Q Consensus 57 ~~l~aHP~LG~~~-~s~~S~~EQs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~e---IL~~l~~Rl~N~~ 132 (328)
+=|.+.|-+++.. +-..+..=|.-.+..+++++...|.+|....-++||. |.-++++-+ -|.-+.++|+-+.
T Consensus 119 erLk~F~l~~~~~~mrvte~rp~~i~v~paddad~~~l~~~Rd~ls~~~g~----r~P~HDaY~FHITlgYl~~wltpee 194 (239)
T COG5255 119 ERLKIFPLLDEEFNMRVTEMRPQGILVEPADDADAKILEEWRDYLSEKFGY----RHPDHDAYQFHITLGYLRIWLTPEE 194 (239)
T ss_pred HHHhcccCCchhhcchhhcccccceEeccCCHHHHHHHHHHHHHHhhhhcc----cCCCCcceEEEEEeeeEeeecChhh
Confidence 4455666666432 3333444455545578999999999999999999985 556776644 4667778999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020289 133 IIEFEIAAQEQMKIT 147 (328)
Q Consensus 133 ~~E~~~Al~Ev~kIa 147 (328)
+.|++.++.|...|-
T Consensus 195 ~a~~q~~l~e~~e~l 209 (239)
T COG5255 195 EAEWQAVLDELLEIL 209 (239)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999987763
No 77
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=29.27 E-value=84 Score=29.94 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCCCCcccHHH--hhHhhc-CCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 020289 35 LNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAE--QSTALA-TANESSSQELSDWNNRYRLRFGFIFIIC 111 (328)
Q Consensus 35 ~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~~s~~S~~E--Qs~al~-~~s~~~~~~L~~lN~~Y~eKFGfpFVIc 111 (328)
+...|+.++++++..++.+...+.|...+-+--+ ....++.| |.--+. +++++..++|.+..... +. +-||.
T Consensus 35 F~~~HA~ArDAV~~~ld~~~l~~~l~~~~~~~v~-S~a~dR~~YL~RPDlGR~L~~~s~~~L~~~~~~~---~D-v~iVi 109 (237)
T PF05985_consen 35 FRLDHARARDAVHAELDVEALAAQLQALPLLRVQ-SQASDRAEYLRRPDLGRRLSEESRARLKELCEKG---PD-VQIVI 109 (237)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHTT-EEEE-BS--SHHHHTT-HHHHTSB-HHHHHHHHHHS-SS----S-EEEEE
T ss_pred HHHHHHHHhhhhccCCChhhhHHhhccCCcEEEE-eCCCCHHHHhhCCCCCCcCCHHHHHHHHHhcCCC---CC-EEEEE
Confidence 3567788889888888876666677763322211 11222333 221121 57888888886654332 33 45666
Q ss_pred ecCCCHHHH
Q 020289 112 ASGRTAAEI 120 (328)
Q Consensus 112 v~g~s~~eI 120 (328)
+.|.|...|
T Consensus 110 aDGLSa~Av 118 (237)
T PF05985_consen 110 ADGLSARAV 118 (237)
T ss_dssp E-TT-HHHH
T ss_pred cCCCCHHHH
Confidence 789887654
No 78
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.13 E-value=94 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=19.3
Q ss_pred CCCCeeEEEEEeeCCCCCCCCCceeEEEEEee
Q 020289 272 DLNPGFYKITFNTGKYCPEGFFPYVSIVFEIR 303 (328)
Q Consensus 272 ~~~~G~Y~l~F~tg~Yf~~~F~p~V~v~F~i~ 303 (328)
.+.||.|+|.....+=....-.+...|.|.|.
T Consensus 35 ~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~ 66 (66)
T PF07495_consen 35 NLPPGKYTLEVRAKDNNGKWSSDEKSLTITIL 66 (66)
T ss_dssp S--SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred eCCCEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence 57899999998876655422233377888773
No 79
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=28.89 E-value=58 Score=36.64 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=41.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
.+|-.|||.+.|.|..|+.|.+.... .+.||++|-.+- .+-+..|+|.|+-.-..|
T Consensus 317 SvtGRVl~g~~g~~l~gvvvlvngk~--------------------~~kTdaqGyykL----en~~t~gtytI~a~kehl 372 (1165)
T KOG1948|consen 317 SVTGRVLVGSKGLPLSGVVVLVNGKS--------------------GGKTDAQGYYKL----ENLKTDGTYTITAKKEHL 372 (1165)
T ss_pred EeeeeEEeCCCCCCccceEEEEcCcc--------------------cceEcccceEEe----eeeeccCcEEEEEeccce
Confidence 46788999999999999999874211 268999997751 123678999998766554
No 80
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.87 E-value=50 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=22.5
Q ss_pred CcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHh
Q 020289 71 SQWSKAEQSTALATANESSSQELSDWNNRYRLR 103 (328)
Q Consensus 71 s~~S~~EQs~al~~~s~~~~~~L~~lN~~Y~eK 103 (328)
..+|..|=..-+.+++.+--++|.+|+++|..|
T Consensus 6 k~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 445666622223356777778999999999987
No 81
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=28.51 E-value=99 Score=24.66 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 020289 85 ANESSSQELSDWNNRYRLRFGFIFIICASG 114 (328)
Q Consensus 85 ~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g 114 (328)
+|+++.++|.+..++++++.|..++|..-.
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv~ 31 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTVP 31 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 578999999999999999999888555543
No 82
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=28.00 E-value=47 Score=22.97 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.4
Q ss_pred CCeeEEEEEeeCC
Q 020289 274 NPGFYKITFNTGK 286 (328)
Q Consensus 274 ~~G~Y~l~F~tg~ 286 (328)
.||+|+|.|..-.
T Consensus 11 ~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 11 KPGTYTLTVQATA 23 (41)
T ss_pred CCeEEEEEEEEEE
Confidence 5999999997643
No 83
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=26.90 E-value=1.3e+02 Score=29.15 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=43.3
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCce-EEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEe
Q 020289 205 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWV-YQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 283 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~-~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 283 (328)
.-.+++.-|||- |+|.+|..|...-.+-.... .+. ..+.-+ .-....||++|++.-.+ +..|.|.+.-.
T Consensus 170 ~ge~f~~~vl~~--GkPv~nA~V~v~~~n~~~~d-~~a--~~~~~ek~~~~~~TD~kG~~~fip-----~r~G~W~~~~~ 239 (264)
T COG5266 170 VGEVFRGKVLDN--GKPVPNATVEVEFDNIDTKD-NRA--KTGNTEKTALVQFTDDKGEVSFIP-----LRAGVWGFAVE 239 (264)
T ss_pred cCCeEEEEEEEC--CccCCCcEEEEEEecccccc-ccc--ccCCCCCcceEEEcCCCceEEEEE-----ccCceEEEEee
Confidence 345789999997 99999999998755411000 000 011122 22567899999997433 34677776544
Q ss_pred e
Q 020289 284 T 284 (328)
Q Consensus 284 t 284 (328)
.
T Consensus 240 ~ 240 (264)
T COG5266 240 H 240 (264)
T ss_pred c
Confidence 3
No 84
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.86 E-value=3.2e+02 Score=27.65 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEecCCC---HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 020289 95 DWNNRYRLRFGFIFIICASGRT---AAEILAELKKRYTNRPIIEFEIAAQEQ 143 (328)
Q Consensus 95 ~lN~~Y~eKFGfpFVIcv~g~s---~~eIL~~l~~Rl~N~~~~E~~~Al~Ev 143 (328)
.+-+..++|||.||+... -.. -++-|..|.+.+.++...+.+..+++.
T Consensus 233 ~~a~~Le~~fGiP~~~~~-p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e 283 (421)
T cd01976 233 YIARMMEEKYGIPWMEYN-FFGPTKIAESLRKIAAYFDDEITAKTEEVIAEY 283 (421)
T ss_pred HHHHHHHHHhCCcEEecc-cCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 345567889999999874 333 377788888888776444444444443
No 85
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=26.86 E-value=1.3e+02 Score=34.14 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=53.9
Q ss_pred HHHhhC-CHHHHHHHHhcCC--------------CCCHHHHHHHHHHHHhcc--CChhhHHHHHhhCC-----CCCCCCC
Q 020289 13 LLGCCG-STKFAKEMASASP--------------FASLNQAVSAARHIWFNL--VDVNGWLDAFSAHP-----QIGQSPS 70 (328)
Q Consensus 13 f~~~~g-sp~~A~~~~~~RP--------------F~s~~~L~~a~~~~~~~~--~~~~~~l~~l~aHP-----~LG~~~~ 70 (328)
++..|+ |||+++.+.. .| ..+.+++...+...+... .+.++++++||..= +||-..+
T Consensus 555 L~~l~~~S~~la~~L~~-~P~lld~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~d~e~~~~~LR~~k~~~~lri~~~dl 633 (943)
T PRK11072 555 LISLCAASPWIAEQLAR-YPLLLDELLDPRALYQPTDWDAYRDELRQYLLRVPEDDEEQQMEALRQFKQAQVLRIAAADI 633 (943)
T ss_pred HHHHHHhCHHHHHHHHH-CHHHHHHHhCcccccCCCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665 7888777653 12 145555554444443211 24566667666432 3332222
Q ss_pred CcccHHHhhH-hhcCCCHHHHHH-HHHHHHHHHHhcCCe---------EEEEecCC
Q 020289 71 SQWSKAEQST-ALATANESSSQE-LSDWNNRYRLRFGFI---------FIICASGR 115 (328)
Q Consensus 71 s~~S~~EQs~-al~~~s~~~~~~-L~~lN~~Y~eKFGfp---------FVIcv~g~ 115 (328)
+....-|+.+ .+..+-+..++. |....+...+|+|.| |+|.+=||
T Consensus 634 ~g~~~~~~v~~~LS~lAd~~l~~~l~~a~~~l~~~~G~p~~~~~~~~~~aViamGK 689 (943)
T PRK11072 634 AGVLPVMKVSDHLTYLAEAILDAVVQQAWQQMVKRHGEPPHLEGRERGFAVIGYGK 689 (943)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCCCCCEEEEeecC
Confidence 2222234433 354444555544 444556667799988 88888876
No 86
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=25.91 E-value=50 Score=31.31 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCC--CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020289 88 SSSQELSDWNNRYRLRFGFIFIICASGR--TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA 157 (328)
Q Consensus 88 ~~~~~L~~lN~~Y~eKFGfpFVIcv~g~--s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~ 157 (328)
+....|..+|..|+..-++.=|=.|++| +.+.|++-+++|=.+- =...+.+.|..||-+|+-.-|-.
T Consensus 31 e~~~k~~~~~~~~~~~~~~~pie~Vt~RvK~~~Si~~Kl~RK~~~i---~~~~~~e~i~DIaGIRI~c~F~~ 99 (231)
T COG2357 31 ELKTKLKILRDEYEKLHDYNPIEHVTSRVKSPESILEKLRRKGLEI---TYENLKEDIQDIAGIRIICQFVD 99 (231)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHhhccCCHHHHHHHHHhcCCCC---ChHHHHhHHHhhcceeEeeehHh
Confidence 4457789999999999999989899997 8899999999983321 13456678999999998766654
No 87
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=25.78 E-value=76 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.8
Q ss_pred CCCCceEEEE--EEeCCCCCcCCC-----------CCCccCC--------------CCeeEEEEEeeCCCCC
Q 020289 245 DVSGWVYQGS--STTNKDGRCGQL-----------MGMIEDL--------------NPGFYKITFNTGKYCP 289 (328)
Q Consensus 245 ~~~~~~~l~~--~~Td~DGR~~~~-----------~~~~~~~--------------~~G~Y~l~F~tg~Yf~ 289 (328)
.+..|++++. -.||+|||+... +.+++.+ --|.|.+.=+-|.=|.
T Consensus 40 g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~M~GhY~M~~e~G~~F~ 111 (126)
T COG2967 40 GEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDEDGETFD 111 (126)
T ss_pred CCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcceEEEEEEEecCCCcEEE
Confidence 3455666654 489999999653 2222222 1367888777777664
No 88
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=24.89 E-value=2.4e+02 Score=25.72 Aligned_cols=71 Identities=18% Similarity=0.078 Sum_probs=43.0
Q ss_pred cHHHhhHhhcCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecC-----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 020289 74 SKAEQSTALATAN-ESSSQELSDWNNRYRLRFGFIFIICASG-----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKI 146 (328)
Q Consensus 74 S~~EQs~al~~~s-~~~~~~L~~lN~~Y~eKFGfpFVIcv~g-----~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kI 146 (328)
|.++=+..+ ..+ .+....|.+|++.|+++ |..|.|+--| .++.+.-..+++=........+..|.-|+-.|
T Consensus 22 s~~~La~~l-~~~~~~v~~~l~~L~~~y~~~-~~gi~i~~~~~~y~l~tk~e~~~~v~~~~~~~~~~~LS~aaLEtLai 98 (188)
T PRK00135 22 SLEQLAEIL-ELEPTEVQQLLEELQEKYEGD-DRGLKLIEFNDVYKLVTKEENADYLQKLVKTPIKQSLSQAALEVLAI 98 (188)
T ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHHHhhC-CCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCCCCHHHHHHHHH
Confidence 344444444 233 34567799999999988 4445444333 27777777776655554555677776666544
No 89
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=24.88 E-value=1.8e+02 Score=33.17 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHhhC-CHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC-----CCCCCCCCc
Q 020289 12 ELLGCCG-STKFAKEMASA-------------SPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP-----QIGQSPSSQ 72 (328)
Q Consensus 12 ~f~~~~g-sp~~A~~~~~~-------------RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP-----~LG~~~~s~ 72 (328)
.++..|+ |||+++.+... .|..+.++|...+...+....+.++++++||..= +|+-..+..
T Consensus 581 ~L~~ll~~S~~la~~L~~~P~lld~Lld~~~~~~~~~~~~l~~~l~~~l~~~~d~e~~~~~LR~~k~~~~lria~~dl~g 660 (986)
T PRK14108 581 LLVLIMGAAPRLADIIARRPHVFDGLLDPAFFSELPTRAYLSARLAAFLADAGSYEEVLDRLRIFAQEQRFLIGIRILTG 660 (986)
T ss_pred HHHHHHhcCHHHHHHHHHChHHHHHHcCcccccCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566776 77777776541 2335667776666665433345567777776542 222221222
Q ss_pred ccHHHhhH-hhcCCCHHHHHH-HHHHHHHHHHhcCC----eEEEEecCC
Q 020289 73 WSKAEQST-ALATANESSSQE-LSDWNNRYRLRFGF----IFIICASGR 115 (328)
Q Consensus 73 ~S~~EQs~-al~~~s~~~~~~-L~~lN~~Y~eKFGf----pFVIcv~g~ 115 (328)
...-++.+ .+..+.+..++. |...-+...++||. .|+|.+=||
T Consensus 661 ~~~~~~v~~~Ls~LAda~l~~al~~a~~~~~~~~G~~~~~~~aViamGK 709 (986)
T PRK14108 661 TISGQRAGRAFADLAELIIGAALDAVEEEFARAHGRIKGGRVAILAMGK 709 (986)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEeeCC
Confidence 21223332 243444444443 44445566788885 499998887
No 90
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=24.81 E-value=62 Score=29.79 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=19.4
Q ss_pred HhcCCeEEEEecCC-CHHHHHHHHHHHh
Q 020289 102 LRFGFIFIICASGR-TAAEILAELKKRY 128 (328)
Q Consensus 102 eKFGfpFVIcv~g~-s~~eIL~~l~~Rl 128 (328)
..||.||++.++-. +-.++-+-|++|+
T Consensus 129 ~~hGiPF~f~v~~gE~f~~tK~Rl~~rl 156 (213)
T PF14533_consen 129 RTHGIPFLFVVKPGETFSDTKERLQKRL 156 (213)
T ss_dssp -EEEEEEEEEEETT--HHHHHHHHHHHH
T ss_pred ccCCCCEEEEeeCCCcHHHHHHHHHHHh
Confidence 78999999999844 6666666666666
No 91
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=1.9e+02 Score=28.58 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCh
Q 020289 85 ANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRP 132 (328)
Q Consensus 85 ~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~ 132 (328)
..++...++..+=..=.++=|.+|+|-.+.||.+++-..|+.++...+
T Consensus 177 ~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~ 224 (329)
T COG3660 177 FQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSP 224 (329)
T ss_pred cCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCc
Confidence 456667777665555556779999999999999999999999988764
No 92
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=24.32 E-value=1.5e+02 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 020289 88 SSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYT 129 (328)
Q Consensus 88 ~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~ 129 (328)
+..+.|.+|. +.|++||+| +||+..++...+ +.+.
T Consensus 19 ~~~~ai~~l~-----~~G~~~vi~-TgR~~~~~~~~~-~~lg 53 (225)
T TIGR02461 19 PAREALEELK-----DLGFPIVFV-SSKTRAEQEYYR-EELG 53 (225)
T ss_pred HHHHHHHHHH-----HCCCEEEEE-eCCCHHHHHHHH-HHcC
Confidence 3445554443 359999999 899998877643 4444
No 93
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=24.22 E-value=1.9e+02 Score=23.19 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred ecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020289 112 ASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 147 (328)
Q Consensus 112 v~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa 147 (328)
.+|.+..+|.+.|++|+..+...=..+|..|+.++.
T Consensus 10 ~~G~~~~~iak~i~~~~~~~~~~A~~iarTe~~~a~ 45 (108)
T TIGR01641 10 QRGLGPNELAKRLRKELGVQKHYAQRLARTETARIY 45 (108)
T ss_pred HcCCCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 468899999999999998775555556666665553
No 94
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=23.38 E-value=1.2e+02 Score=28.90 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 020289 88 SSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKK 126 (328)
Q Consensus 88 ~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~ 126 (328)
-..+++..++..|++..+.|++|-..+.+.+++.+.++.
T Consensus 36 ~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~ 74 (266)
T cd04180 36 LIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH
Confidence 346788888999988889999999999999999999986
No 95
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.82 E-value=2.4e+02 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCeEEEEe---cCC-CHHHHHHHHHHHhcCCh
Q 020289 95 DWNNRYRLRFGFIFIICA---SGR-TAAEILAELKKRYTNRP 132 (328)
Q Consensus 95 ~lN~~Y~eKFGfpFVIcv---~g~-s~~eIL~~l~~Rl~N~~ 132 (328)
.+-+..++|||.||+..- -|. .-++-|..|.+.+..+.
T Consensus 221 ~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 221 EFAQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIEK 262 (427)
T ss_pred HHHHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCCh
Confidence 445667899999999873 354 44778888888888664
No 96
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.37 E-value=3.8e+02 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCeEEEEecCCCH---HHHHHHHHHHhc
Q 020289 96 WNNRYRLRFGFIFIICASGRTA---AEILAELKKRYT 129 (328)
Q Consensus 96 lN~~Y~eKFGfpFVIcv~g~s~---~eIL~~l~~Rl~ 129 (328)
+-+..++|||.|||.+..-... ++-|+.+.+.+.
T Consensus 207 ~a~~L~e~~giP~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 207 AAEWLEERFGIPYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp HHHHHHHHHT-EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeeeccccccHHHHHHHHHHHHHHhC
Confidence 5677899999999996654444 667777777777
No 97
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=22.28 E-value=72 Score=29.24 Aligned_cols=25 Identities=12% Similarity=0.577 Sum_probs=21.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcCC
Q 020289 82 LATANESSSQELSDWNNRYRLRFGF 106 (328)
Q Consensus 82 l~~~s~~~~~~L~~lN~~Y~eKFGf 106 (328)
+..+++.|++.|.+|-.+|+.||-+
T Consensus 125 lsdL~a~e~eal~eWE~~fk~KY~~ 149 (183)
T KOG1110|consen 125 LSDLTAEELEALNEWETKFKAKYPV 149 (183)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCce
Confidence 5578999999999999999998843
No 98
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=21.71 E-value=77 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=35.3
Q ss_pred CCcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-CHHHHHHHHHHHhcC
Q 020289 70 SSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGR-TAAEILAELKKRYTN 130 (328)
Q Consensus 70 ~s~~S~~EQs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~-s~~eIL~~l~~Rl~N 130 (328)
++.+|++||-.. --.|++.--+|++|++.|.|+-.-.+ ..+...+-++.||..
T Consensus 5 lA~l~qee~dKv--------nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFreRL~~ 58 (75)
T PRK10969 5 LAKLSQEEMDKV--------NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFRERLIA 58 (75)
T ss_pred hhhcCHHHHHHH--------HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777543 12355666679999999988755444 556666677777753
No 99
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=21.42 E-value=1.1e+02 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=19.4
Q ss_pred CHHHHHHHHhcC---CCCCHHHHHHHHH
Q 020289 19 STKFAKEMASAS---PFASLNQAVSAAR 43 (328)
Q Consensus 19 sp~~A~~~~~~R---PF~s~~~L~~a~~ 43 (328)
+...|+.+...| ||.|+++++..+.
T Consensus 36 g~~~a~~I~~~R~~g~f~s~~df~~R~~ 63 (90)
T PF14579_consen 36 GEEVAEKIVEERENGPFKSLEDFIQRLP 63 (90)
T ss_dssp -HHHHHHHHHHHHCSS-SSHHHHHHHS-
T ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHh
Confidence 577888888888 9999999988774
No 100
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=21.08 E-value=1.7e+02 Score=26.83 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCHHHHHHHHH
Q 020289 105 GFIFIICASGRTAAEILAELK 125 (328)
Q Consensus 105 GfpFVIcv~g~s~~eIL~~l~ 125 (328)
|.+|++| +||+...+...++
T Consensus 32 g~~~~~~-TgR~~~~~~~~~~ 51 (256)
T TIGR01486 32 GIPVIPC-TSKTAAEVEYLRK 51 (256)
T ss_pred CCeEEEE-cCCCHHHHHHHHH
Confidence 9999888 8998888766554
No 101
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.25 E-value=1.8e+02 Score=27.56 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCCCCCCCceeEEEEEeec
Q 020289 247 SGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRE 304 (328)
Q Consensus 247 ~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~~F~p~V~v~F~i~~ 304 (328)
+.-..+-+-.||+-|-+.. ...+.+|+|.++|.-..|= .|.-.|.|.|
T Consensus 252 GaDVpVTsVITnssG~~vT----NgqLsaGtYtVTySAsGY~------DVTqtlvVTD 299 (301)
T PF06488_consen 252 GADVPVTSVITNSSGNVVT----NGQLSAGTYTVTYSASGYA------DVTQTLVVTD 299 (301)
T ss_pred CCcceeEEEEEcCCCcEee----cCcccCceEEEEEeccccc------cccceEEEec
Confidence 4445677889999997642 2578999999999987774 4444555544
No 102
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=20.21 E-value=71 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 020289 93 LSDWNNRYRLRFGFIFII 110 (328)
Q Consensus 93 L~~lN~~Y~eKFGfpFVI 110 (328)
|..-.++|-.++|+|||+
T Consensus 87 Ls~~Q~~~L~rWGYPYV~ 104 (160)
T PF06299_consen 87 LSPRQRANLERWGYPYVM 104 (160)
T ss_pred CCHHHHHHHHHhCCCcee
Confidence 555567788899999986
No 103
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=20.18 E-value=2.4e+02 Score=23.56 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCCCCCCCceeEEEEEee
Q 020289 253 GSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIR 303 (328)
Q Consensus 253 ~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~~F~p~V~v~F~i~ 303 (328)
.++.++.||...- ..+.+|.|.|....-+|. |-| +++.|.
T Consensus 22 ~~~~v~~dG~F~f-----~~Vp~GsY~L~V~s~~~~---F~~---~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVF-----HNVPPGSYLLEVHSPDYV---FPP---YRVDVS 61 (123)
T ss_pred eEEEecCCCEEEe-----CCCCCceEEEEEECCCcc---ccC---EEEEEe
Confidence 3578889997641 357899999999988885 444 455555
No 104
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.07 E-value=2.1e+02 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.055 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 020289 116 TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLA 152 (328)
Q Consensus 116 s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~ 152 (328)
++.|=|+.|+++|..-|+.|++.++++-...-..+..
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~ 38 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGE 38 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 6888999999999988999999999988877766654
Done!