Query 020289
Match_columns 328
No_of_seqs 233 out of 1230
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwv_A 5-hydroxyisourate hydro 100.0 1.6E-49 5.3E-54 339.6 9.9 133 178-328 2-138 (138)
2 2q37_A OHCU decarboxylase; 2-O 100.0 2.2E-48 7.7E-53 347.4 13.6 154 3-157 20-180 (181)
3 2g2n_A Transthyretin-like prot 100.0 4E-48 1.4E-52 321.9 9.6 108 206-328 3-114 (114)
4 2o70_A OHCU decarboxylase; URI 100.0 1E-45 3.5E-50 328.6 15.1 150 7-157 8-168 (174)
5 2h0e_A Transthyretin-like prot 100.0 5.9E-47 2E-51 317.9 6.3 106 206-328 8-121 (121)
6 2o8i_A AGR_C_4230P, hypothetic 100.0 6.1E-46 2.1E-50 327.5 13.0 150 7-157 1-164 (165)
7 3qva_A Transthyretin-like prot 100.0 2.8E-45 9.7E-50 305.2 7.1 104 206-328 9-116 (116)
8 2h4e_A Transthyretin; amyloid, 100.0 1.2E-44 4.2E-49 306.1 8.6 113 201-326 4-120 (127)
9 3o7i_A OHCU decarboxylase; lya 100.0 1.5E-43 5.2E-48 318.1 15.0 149 7-157 32-189 (189)
10 1oo2_A Transthyretin; retinol- 100.0 3.3E-44 1.1E-48 300.6 9.0 108 206-326 1-112 (119)
11 1f86_A Transthyretin Thr119Met 100.0 3.6E-44 1.2E-48 298.8 8.6 107 207-326 1-111 (115)
12 4ank_A Transthyretin; hormone 100.0 2.8E-43 9.7E-48 304.6 8.7 111 201-324 24-138 (147)
13 3e8v_A Possible transglutamina 94.2 0.056 1.9E-06 42.0 4.7 62 208-288 2-63 (82)
14 2bum_B Protocatechuate 3,4-dio 86.2 0.93 3.2E-05 41.6 5.5 66 209-280 81-150 (241)
15 3o5u_A Chlorocatechol 1,2-diox 86.1 0.59 2E-05 43.4 4.1 56 208-264 105-160 (257)
16 3t63_A 3,4-PCD, protocatechuat 84.5 1.2 4.1E-05 39.7 5.3 66 208-280 50-116 (200)
17 3t63_M 3,4-PCD, protocatechuat 84.1 1.5 5.2E-05 40.2 5.9 66 209-280 80-149 (238)
18 1h8l_A Carboxypeptidase GP180 84.0 0.75 2.6E-05 44.2 4.0 57 207-288 301-357 (380)
19 2bum_A Protocatechuate 3,4-dio 83.7 1.1 3.7E-05 40.3 4.6 56 208-264 54-114 (209)
20 1tmx_A Hydroxyquinol 1,2-dioxy 83.3 0.86 2.9E-05 43.1 4.0 53 208-264 135-188 (293)
21 3irp_X URO-adherence factor A; 82.9 0.87 3E-05 45.1 4.0 52 212-284 320-371 (429)
22 2boy_A 3-chlorocatechol 1,2-di 81.3 1.2 4.1E-05 41.3 4.0 55 208-264 104-158 (254)
23 3n9t_A PNPC; phospholipid bind 81.1 1.3 4.4E-05 41.8 4.3 55 208-264 131-185 (290)
24 2nsm_A Carboxypeptidase N cata 80.9 1.2 4.1E-05 43.7 4.2 57 206-288 320-376 (439)
25 3th1_A Chlorocatechol 1,2-diox 80.0 1.9 6.5E-05 40.0 4.9 53 208-264 101-155 (260)
26 1dmh_A 1,2-CTD, catechol 1,2-d 79.9 1.8 6.1E-05 41.2 4.8 56 208-264 135-191 (311)
27 2xsu_A Catechol 1,2 dioxygenas 79.8 1.4 4.7E-05 42.0 4.0 65 208-279 138-202 (312)
28 3hhy_A 1,2-CTD, catechol 1,2-d 79.3 1.6 5.6E-05 40.9 4.3 55 208-264 133-187 (280)
29 2azq_A Catechol 1,2-dioxygenas 79.1 1.5 5.1E-05 41.7 4.0 55 208-264 134-188 (311)
30 4eiu_A Uncharacterized hypothe 76.7 7 0.00024 36.0 7.6 66 206-288 9-80 (249)
31 3mn8_A LP15968P; catalytic dom 76.2 2.2 7.6E-05 41.9 4.5 56 207-287 337-392 (435)
32 2p9r_A Alpha-2-M, alpha-2-macr 73.9 18 0.00061 27.6 8.4 72 213-304 25-98 (102)
33 1uwy_A Carboxypeptidase M; met 66.9 4.8 0.00016 39.3 4.4 59 206-288 295-353 (426)
34 2pz4_A Protein GBS052; SPAB, G 64.5 4.3 0.00015 36.4 3.3 58 217-284 27-96 (239)
35 3uaf_A TTR-52; beta barrel/san 61.6 3.6 0.00012 33.6 2.0 39 217-264 13-53 (117)
36 1nkg_A Rhamnogalacturonase B; 50.7 32 0.0011 34.6 7.3 58 205-287 256-313 (508)
37 2ww8_A RRGA, cell WALL surface 47.9 15 0.00051 39.5 4.6 76 205-304 46-123 (893)
38 3uxf_A Fimbrial subunit type 1 46.5 12 0.00042 37.4 3.4 57 216-282 68-142 (488)
39 1f00_I Intimin; immunoglobulin 45.5 15 0.00052 34.2 3.7 61 207-286 21-81 (282)
40 3nrx_A Protein regulator of cy 43.3 38 0.0013 28.0 5.4 56 87-146 64-119 (130)
41 2yqc_A UDP-N-acetylglucosamine 42.0 27 0.00093 34.8 5.1 40 87-126 138-183 (486)
42 2xv9_A ABA-1A1 repeat UNIT; li 41.9 99 0.0034 25.7 7.8 61 84-158 20-80 (134)
43 3kpt_A Collagen adhesion prote 39.6 17 0.00057 34.6 3.0 75 206-304 7-83 (355)
44 3arc_U Photosystem II 12 kDa e 39.3 9.3 0.00032 30.1 1.0 33 7-39 22-55 (97)
45 1cwv_A Invasin; integrin-bindi 36.3 49 0.0017 32.8 6.0 63 207-286 28-90 (492)
46 3hr6_A SPAA, putative surface- 35.2 10 0.00036 37.3 0.8 57 216-283 28-104 (436)
47 2duy_A Competence protein come 34.0 20 0.0007 26.0 2.1 32 8-39 24-56 (75)
48 1s5l_U Photosystem II 12 kDa e 30.9 14 0.00049 30.9 0.8 34 7-40 59-93 (134)
49 2dmc_A Filamin-B; beta-sandwic 30.5 61 0.0021 25.7 4.6 67 205-284 9-77 (116)
50 3kpt_A Collagen adhesion prote 28.3 31 0.0011 32.7 2.9 79 208-304 252-341 (355)
51 1dd4_C 50S ribosomal protein L 28.2 37 0.0012 22.6 2.3 18 90-107 15-32 (40)
52 1cwv_A Invasin; integrin-bindi 25.3 59 0.002 32.2 4.4 61 206-286 125-185 (492)
53 3a1s_A Iron(II) transport prot 22.8 1.3E+02 0.0043 26.6 5.7 46 100-145 135-191 (258)
54 2hr0_A Complement C3 beta chai 22.5 2.3E+02 0.0078 28.4 8.2 85 205-302 117-216 (645)
55 1zav_U 50S ribosomal protein L 21.7 56 0.0019 20.3 2.2 16 90-105 15-30 (30)
No 1
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=100.00 E-value=1.6e-49 Score=339.56 Aligned_cols=133 Identities=41% Similarity=0.764 Sum_probs=101.5
Q ss_pred hhhHHhhhccccccccccCcccCCCCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEe
Q 020289 178 DRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTT 257 (328)
Q Consensus 178 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~T 257 (328)
+|+..+.+|...++. ...|..++++|||||||||++|+||+||+|+|+++.+. ++.|+.|++++|
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~LTtHVLDt~~G~PAagv~V~L~~~~~~----------~~~w~~l~~~~T 66 (138)
T 3iwv_A 2 NRLQHIRGHIVSADK-----HINMSATLLSPLSTHVLNIAQGVPGANMTIVLHRLDPV----------SSAWNILTTGIT 66 (138)
T ss_dssp -----------------------------CCEECCEEETTTTEECTTCEEEEEEECSS----------SCCEEEEEEEEC
T ss_pred Ccceeeeceeeeccc-----ccccccCCCCCceEEEeecCCccCCCCCEEEEEEECCC----------CCCcEEEEEEec
Confidence 467777777665443 35566678899999999999999999999999998642 368999999999
Q ss_pred CCCCCcCCCCCCccCCCCeeEEEEEeeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 258 NKDGRCGQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 258 d~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
|+||||+.|++ ++.+.+|+|||+|+||+||+ ++|||+|+|+|.|+++ .+|||||||||||||||||||
T Consensus 67 n~DGR~~~ll~-~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~p~V~V~F~i~d~--~~HYHVPLLlSP~gYSTYRGS 138 (138)
T 3iwv_A 67 NDDGRCPGLIT-KENFIAGVYKMRFETGKYWDALGETCFYPYVEIVFTITNT--SQHYHVPLLLSRFSYSTTRGS 138 (138)
T ss_dssp CTTSCCTTSSC-TTTCCSEEEEEEECHHHHHHHTTCCCSCSCEEEEEEECCT--TSCEECCEEEETTEEEEECBC
T ss_pred CCCCCcCCccC-cccCCCceEEEEEehHHHHHhcCCCccceeeEEEEEECCC--CCCeEEeEEecCCcceeecCC
Confidence 99999999775 56899999999999999996 7899999999999985 799999999999999999998
No 2
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=100.00 E-value=2.2e-48 Score=347.44 Aligned_cols=154 Identities=60% Similarity=0.994 Sum_probs=135.0
Q ss_pred cccccCCHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-------CCcccH
Q 020289 3 EMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-------SSQWSK 75 (328)
Q Consensus 3 ~~~~~m~~~~f~~~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-------~s~~S~ 75 (328)
.|++.|++++|++|||+||||+++|+.|||.| .+|+.++...++..++.++|+++|++||+||++. ++.+|+
T Consensus 20 ~~~~~m~~~~f~~~~~sp~~a~~~~~~RPf~s-~~lL~~A~~~~~~~~~~~~~l~~L~aHP~Lg~k~~~~~~~~lt~~S~ 98 (181)
T 2q37_A 20 HMAMEIGEDEWKVCCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINSDFARRSV 98 (181)
T ss_dssp ------CCSGGGTSSSCHHHHHHHHTSCCCCH-HHHHHHHHHHHHHTSCHHHHHHHHHTSCCTTSCCC------------
T ss_pred hhhccCCHHHHHHHcCCHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCccccccccccccchhhhhH
Confidence 48889999999999999999999999999999 8888888777777789999999999999999885 478899
Q ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020289 76 AEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (328)
Q Consensus 76 ~EQs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~ 155 (328)
+||++++++++++++++|.+||++|++||||||||||+|+++++||++|++||+|++++|+++|++||.|||++||.+||
T Consensus 99 ~EQaagl~~~~~~e~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~~IL~~l~~RL~N~~~~E~~~Al~Ev~kIa~~RL~~l~ 178 (181)
T 2q37_A 99 SEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLF 178 (181)
T ss_dssp -TTHHHHTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99996688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 020289 156 SA 157 (328)
Q Consensus 156 ~~ 157 (328)
.+
T Consensus 179 ~~ 180 (181)
T 2q37_A 179 SD 180 (181)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 3
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=100.00 E-value=4e-48 Score=321.92 Aligned_cols=108 Identities=41% Similarity=0.762 Sum_probs=100.2
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
+++||||||||++|+||+||+|+|+++++ ++|+.|++++||+||||+.|+ .++.+.+|+|||+|+||
T Consensus 3 ~~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~l~~~~Tn~DGR~~~l~-~~~~~~~G~Y~l~F~tg 69 (114)
T 2g2n_A 3 QNILSVHILNQQTGKPAADVTVTLEKKAD------------NGWLQLNTAKTDKDGRIKALW-PEQTATTGDYRVVFKTG 69 (114)
T ss_dssp -CCEEEEEEETTTTEECCSCEEEEEEECS------------SSEEEEEEEECCTTSEESCCS-CSSCCCSEEEEEEECHH
T ss_pred CCCeEEEEecCCCcCCCCCCEEEEEEeCC------------CCcEEEEEEecCCCCcccccc-CCCCCCceEEEEEEEhh
Confidence 57999999999999999999999999753 369999999999999999987 45689999999999999
Q ss_pred CCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 286 KYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 286 ~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
+||+ ++|||+|+|+|.|+|+ .+|||||||||||||||||||
T Consensus 70 ~Yf~~~~~~~F~p~V~i~F~i~d~--~~HYHVPLLlSP~~YSTYRGS 114 (114)
T 2g2n_A 70 DYFKKQNLESFFPEIPVEFHINKV--NEHYHVPLLLSQYGYSTYRGS 114 (114)
T ss_dssp HHHHHTTCCCSCSCEEEEEEESST--TSCEEEEEEEETTEEEEECCC
T ss_pred HhHhhcCCCCCcceEEEEEEECCC--CCCeEEeEEecCCccccccCC
Confidence 9996 7899999999999985 799999999999999999998
No 4
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=100.00 E-value=1e-45 Score=328.56 Aligned_cols=150 Identities=27% Similarity=0.401 Sum_probs=141.7
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~ 76 (328)
.|++++|+.+|+ |||||+++|++|||.|+++|++++..+| ..++.++|+++|++||+||++. ++.+|++
T Consensus 8 ~l~~~~f~~~l~~~~e~s~w~a~~~~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~lg~~~~~~~~lt~~S~~ 86 (174)
T 2o70_A 8 ALAYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEARISEFI-HSLPDSGKEGILRCHPDLAGRDLQSGTLTPESQE 86 (174)
T ss_dssp TCCHHHHHHHHTTSSTTCHHHHHHHGGGCSCSSHHHHHHHHHHHH-HHSCHHHHHHHHHTSCCTTSHHHHHTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCccccccccccccchhhHH
Confidence 489999998776 8999999999999999999999999996 5689999999999999999885 7899999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020289 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (328)
Q Consensus 77 EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~ 155 (328)
||+++ +++++++++++|.+||++|++||||||||||+|+++++||+.|++||+|++++|+++|++||.|||++||.+|+
T Consensus 87 EQa~agl~~~~~~~~~~l~~lN~~Y~~kFGfpFvi~v~g~s~~~IL~~l~~Rl~n~~~~E~~~a~~ev~kIa~~RL~~l~ 166 (174)
T 2o70_A 87 EQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFVICARLNNKADIVRQLSERLKNRRTAELECAIEEVKKICSLRLHSIV 166 (174)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHHHHHHHHSSCCCCCGGGCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99986 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 020289 156 SA 157 (328)
Q Consensus 156 ~~ 157 (328)
..
T Consensus 167 ~~ 168 (174)
T 2o70_A 167 LS 168 (174)
T ss_dssp --
T ss_pred ch
Confidence 74
No 5
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=100.00 E-value=5.9e-47 Score=317.86 Aligned_cols=106 Identities=38% Similarity=0.666 Sum_probs=98.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
+++||||||||++|+||+||+|+|+++ +|+.|++++||+||||+.|+..++.+.+|+|||+|+||
T Consensus 8 m~~lstHVLDt~~G~PAagv~V~L~~~---------------~~~~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~tg 72 (121)
T 2h0e_A 8 MGKLTTHILDLTCGKPAANVKIGLKRL---------------GESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHAG 72 (121)
T ss_dssp CCEEECCEEETTTTEECTTCEEEEEET---------------TSCCCEEEECCTTSSCSSCSEEGGGCCSEEEEEEECHH
T ss_pred cCCeeEEEecCCCcCCCCCCEEEEEEC---------------CceEEEEEecCCCCCccCCcCCCCCcCceEEEEEEEhH
Confidence 568999999999999999999999874 29999999999999999988666789999999999999
Q ss_pred CCCC--------CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 286 KYCP--------EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 286 ~Yf~--------~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
+||+ ++|||+|+|+|.|+|+ .+|||||||||||||||||||
T Consensus 73 ~Yf~~~~~~~~~~~F~p~V~i~F~i~d~--~~HYHVPLLlSP~gYSTYRGS 121 (121)
T 2h0e_A 73 DYFASKNMNAADQPFLTIVTVRFQLADP--DAHYHIPLLLSPFGYQVYRGS 121 (121)
T ss_dssp HHHHTTC--CCSSCSCSSEEEEEEECCT--TSEEECCEEEETTEEEECCBC
T ss_pred HhHhhccccCCCCCCcceEEEEEEECCC--CCCeEEeEEecCCccccccCC
Confidence 9995 5899999999999985 799999999999999999998
No 6
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=100.00 E-value=6.1e-46 Score=327.48 Aligned_cols=150 Identities=25% Similarity=0.342 Sum_probs=134.3
Q ss_pred cCCHHHHHHhhC-----CHHHHHHHHhc---CCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcc
Q 020289 7 VLDEEELLGCCG-----STKFAKEMASA---SPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQW 73 (328)
Q Consensus 7 ~m~~~~f~~~~g-----sp~~A~~~~~~---RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~ 73 (328)
.|++++|+.+|| |||||+.+|+. |||.|+++|++++..+| ..++.++|+++|++||+||++. ++.+
T Consensus 1 ~~~~~~f~~~l~~lfE~s~w~a~~~~~~~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~lg~~~~~~~~lt~~ 79 (165)
T 2o8i_A 1 MVTREEFVARFGGVFEHSPFIAERAYDAGGAGLELTAKAVHGALCAQF-RVASEAERLGVLRAHPDLAGKLAIAGELTAD 79 (165)
T ss_dssp CCCHHHHHHHHTTSSTTCHHHHHHHHHTTGGGSCSSHHHHHHHHHHHH-HHSCHHHHHHHHHHSCCHHHHHHHHHTTC--
T ss_pred CcCHHHHHHHHHHHhcCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCccccccccccccchh
Confidence 489999999998 99999999999 99999999999999996 5589999999999999999875 7899
Q ss_pred cHHHhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 020289 74 SKAEQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLA 152 (328)
Q Consensus 74 S~~EQs~a-l~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~ 152 (328)
|++||+++ +++++++++++|.+||++|++||||||||||+|+++++||+.|++||+|++++|+++|++||.|||++||.
T Consensus 80 S~~EQa~agl~~~~~~~~~~l~~lN~~Ye~kFGfpFvi~v~g~~~~~Il~~l~~Rl~nd~~~E~~~a~~e~~kIa~~RL~ 159 (165)
T 2o8i_A 80 SRNEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKIAWLRLA 159 (165)
T ss_dssp --------CTTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccccCCHHHHHHHHHHHHHHHHHcCCeeEeeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 020289 153 KLFSA 157 (328)
Q Consensus 153 ~L~~~ 157 (328)
+|+.+
T Consensus 160 ~l~~~ 164 (165)
T 2o8i_A 160 SMLPE 164 (165)
T ss_dssp HHSCC
T ss_pred HHhcC
Confidence 99975
No 7
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=100.00 E-value=2.8e-45 Score=305.16 Aligned_cols=104 Identities=38% Similarity=0.607 Sum_probs=91.5
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
+++||||||||++|+||+||+|+|+++. +.|++++||+||||..|. ++.+.+|+|||+|+||
T Consensus 9 M~~lstHVLDt~~G~PAagv~V~L~~~~----------------~~l~~~~Tn~DGR~~~l~--~~~~~~G~Y~L~F~tg 70 (116)
T 3qva_A 9 MSTLSTHILDISTGTPAEGVTVSLSREG----------------ETLANLVTNAQGRIATFS--AAPLPAGRYCLTAETG 70 (116)
T ss_dssp CBCEEEEEEETTTTEECTTCEEEEEETT----------------EEEEEEECCTTSEECCSC--SSCBCSSEEEEEECHH
T ss_pred cCCeeeEEeecCCCcCCCCCEEEEEEcc----------------EeEEEeccCCCCCccccc--cccCCCceEEEEEeHH
Confidence 3589999999999999999999999742 579999999999998754 3679999999999999
Q ss_pred CCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289 286 KYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328 (328)
Q Consensus 286 ~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS 328 (328)
+||+ ++|||+|+|+|.|+|+ +.+|||||||||||||||||||
T Consensus 71 ~Yf~~~g~~~F~p~V~v~F~i~d~-~~~HYHVPLLlSP~gYSTYRGS 116 (116)
T 3qva_A 71 AWFARAGRESVFTRAQIDFVIGEA-AEDHFHLPFLIAPGGWSTYRGS 116 (116)
T ss_dssp HHHHHTTCCCSEEEEEEEEEC------CCEECCEEEETTEEEEECCC
T ss_pred HHHhhcCCCcceeeEEEEEEeCCC-CCCCEEEeEEecCCccccccCC
Confidence 9997 6899999999999984 2799999999999999999998
No 8
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=100.00 E-value=1.2e-44 Score=306.10 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=97.7
Q ss_pred CCCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEE
Q 020289 201 IPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 201 ~~~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l 280 (328)
+..+++++||||||||++|+||+||+|+|+++.. +++|+.|++++||+||||+.|+ ....+.+|+|||
T Consensus 4 ~~~~~~~~LStHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~ll-~~~~~~~G~Y~L 71 (127)
T 2h4e_A 4 GTGESKXPLMVKVLDAVRGSPAINVAVHVFRKAA-----------DDTWEPFASGKTSESGELHGLT-TEEEFVEGIYKV 71 (127)
T ss_dssp ------CCEEEEEEETTTTEECTTCEEEEEEECT-----------TSCEEEEEEEECCTTSEECCSC-CTTTCCSEEEEE
T ss_pred CCcCCcCCEEEEEecCCCcCCCCCCEEEEEEeCC-----------CCCeEEEEEeecCCCccccCcC-CCCCccceEEEE
Confidence 4556689999999999999999999999999742 2469999999999999999987 446799999999
Q ss_pred EEeeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCcccccc
Q 020289 281 TFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYR 326 (328)
Q Consensus 281 ~F~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYR 326 (328)
+|+||+||+ ++|||+|+|+|.|+++ .++||||||||||||||||.
T Consensus 72 ~F~tg~Yf~~~g~~~F~p~V~I~F~i~d~-~~~HYHVPLLlSP~gYST~~ 120 (127)
T 2h4e_A 72 EIDTKSYWKALGISPFHEHAEVVFTANDS-GPRRYTIAALLSPYSYSTTA 120 (127)
T ss_dssp EECHHHHHHHTTCCCSEEEEEEEEEESTT-SCCEEEEEEEEETTEEEEEE
T ss_pred EEEhHHhHhhcCCCCCcceEEEEEEECCC-CCCCEEEeEEecCCcceeeE
Confidence 999999997 7899999999999984 15999999999999999984
No 9
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=100.00 E-value=1.5e-43 Score=318.11 Aligned_cols=149 Identities=34% Similarity=0.477 Sum_probs=128.1
Q ss_pred cCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHHH
Q 020289 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKAE 77 (328)
Q Consensus 7 ~m~~~~f~~----~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-----~s~~S~~E 77 (328)
.|++++|+. ||+++.|++++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++++|+.|
T Consensus 32 ~l~~~~f~~~f~~~~e~~~Wa~~~~~~RPF~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~Lg~~~~~~~~lt~~S~~E 110 (189)
T 3o7i_A 32 SLSKDEAAGLLAPCVALPAWGETLVSLRPFASRHALLQTAREAM-ANWGEDELNAALSAHPRIGEKPTGSQAHAALSRQE 110 (189)
T ss_dssp HSCHHHHHHHHGGGCSCHHHHHHHHHTCCCSCHHHHHHHHHHHH-HTCCHHHHHHHHTTCCCTTSSCC------------
T ss_pred CCCHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCccccccccccchhhhhHHH
Confidence 489999765 6678888899999999999999999999996 5589999999999999999986 68899999
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020289 78 QSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA 157 (328)
Q Consensus 78 Qs~al~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~ 157 (328)
|+++. .++++++++|.+||++|++||||||||||+|+++++||++|++||+|++++|+++|++||.|||++||.+||++
T Consensus 111 Qa~~~-~~~~~e~~~L~~LN~~Ye~kFGfpFVi~v~G~s~~~IL~~l~~Rl~nd~e~E~~~Al~Ev~kIa~~RL~~l~~~ 189 (189)
T 3o7i_A 111 QSSVD-SENERLAQALREGNARYEARFGRVFLIRAKGRSGEEILQALTRRLQHTADEEVAEALAQLREITMLRLEGAIGE 189 (189)
T ss_dssp ----C-CHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHBCC
T ss_pred Hhhhc-CCCHHHHHHHHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99763 57999999999999999999999999999999999999999999999999999999999999999999999863
No 10
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=100.00 E-value=3.3e-44 Score=300.56 Aligned_cols=108 Identities=29% Similarity=0.593 Sum_probs=97.8
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
+++||||||||++|+||+||+|+|+++.+ +++|+.|++++||+||||+.|+ ....+.+|+|||+|+||
T Consensus 1 ~~~lstHVLDt~~G~PAagv~V~L~~~~~-----------~~~~~~l~~~~Tn~DGR~~~l~-~~~~~~~G~Y~l~F~tg 68 (119)
T 1oo2_A 1 RCPLMVKILDAVKGTPAGSVALKVSQKTA-----------DGGWTQIATGVTDATGEIHNLI-TEQQFPAGVYRVEFDTK 68 (119)
T ss_dssp CCSEEEEEEETTTTEECTTCEEEEEEECT-----------TSCEEEEEEEECCTTSCCTTCS-CGGGCCSEEEEEEECHH
T ss_pred CCceeEEEecCCCcCCCCCCEEEEEEeCC-----------CCCcEEEEEEecCCCCcccCcC-CCCCCCceEEEEEEEhH
Confidence 46899999999999999999999998753 2469999999999999999987 44679999999999999
Q ss_pred CCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCcccccc
Q 020289 286 KYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYR 326 (328)
Q Consensus 286 ~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYR 326 (328)
+||+ ++|||+|+|+|+|+++ .++||||||||||||||||.
T Consensus 69 ~Yf~~~g~~~F~p~V~i~F~i~d~-~~~HYHVPLLlSP~~YST~~ 112 (119)
T 1oo2_A 69 AYWTNQGSTPFHEVAEVVFDAHPE-GHGHYTLALLLSPFSYTTTA 112 (119)
T ss_dssp HHHHHTTCCCSEEEEEEEEEECCS-SSCCEEEEEEEETTEEEEEE
T ss_pred HhHhhcCCCCCcceEEEEEEECCC-CCCCEEEeEEecCCcceeeE
Confidence 9997 7899999999999984 15999999999999999984
No 11
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=100.00 E-value=3.6e-44 Score=298.82 Aligned_cols=107 Identities=29% Similarity=0.478 Sum_probs=97.2
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
++||||||||++|+||+||+|+|+++.+ +++|+.|++++||+||||+.|+ ....+.+|+|||+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~-----------~~~~~~l~~~~Tn~DGR~~~l~-~~~~~~~G~Y~l~F~tg~ 68 (115)
T 1f86_A 1 CPLMVKVLDAVRGSPAINVAVHVFRKAA-----------DDTWEPFASGKTSESGELHGLT-TEEEFVEGIYKVEIDTKS 68 (115)
T ss_dssp CCEEEEEEETTTTEECTTCEEEEEEECT-----------TSCEEEEEEEECCTTSEECCSC-CTTTCCSEEEEEEECHHH
T ss_pred CCeeEEEccCCCCCcCCCCEEEEEEcCC-----------CCCcEEEEEeecCCCccccCcC-CCCCCcceEEEEEEEhhH
Confidence 4799999999999999999999999753 2469999999999999999987 446799999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCcccccc
Q 020289 287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYR 326 (328)
Q Consensus 287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYR 326 (328)
||+ ++|||+|+|+|+|+++ .++||||||||||||||||.
T Consensus 69 Yf~~~g~~~F~p~V~i~F~i~d~-~~~HYHVPLLlSP~~YST~~ 111 (115)
T 1f86_A 69 YWKALGISPFHEHAEVVFTANDS-GPRRYTIAALLSPYSYSTMA 111 (115)
T ss_dssp HHHHTTCCCSEEEEEEEEEESTT-SCCEEEEEEEEETTEEEEEE
T ss_pred hHhhcCCCCCcceEEEEEEECCC-CCCCEEEeEEecCCcceEEE
Confidence 997 7899999999999984 15999999999999999984
No 12
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=304.57 Aligned_cols=111 Identities=28% Similarity=0.459 Sum_probs=97.5
Q ss_pred CCCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEE
Q 020289 201 IPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 201 ~~~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l 280 (328)
++..+|+||||||||+++|+||+||+|+|+++.. ++.|+.|++++||+||||++|++ .+.+.+|+|||
T Consensus 24 ~~~~sk~PLTtHVLDt~~G~PA~gv~V~L~~~~~-----------~~~~~~l~~~~Td~DGR~~~ll~-~~~~~~G~Y~L 91 (147)
T 4ank_A 24 GTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAA-----------DDTWEPFASGKTSESGELHGLTT-EEEFVEGIYKV 91 (147)
T ss_dssp ------CCEEEEEEETTTTEECCSCEEEEEEECT-----------TSCEEEEEEEECCTTSEECCSCC-TTTCCSEEEEE
T ss_pred CCCCCCCCeEEEEEeCCCCcCCCCCEEEEEEECC-----------CCCeEEEEEEEeCCCCCCCCCCC-ccccCCceEEE
Confidence 4556799999999999999999999999999764 46899999999999999999875 46799999999
Q ss_pred EEeeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCcccc
Q 020289 281 TFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT 324 (328)
Q Consensus 281 ~F~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYST 324 (328)
+|+||+||+ ++|||+|+|+|.|+|+ ..+|||||||||||||||
T Consensus 92 ~F~tg~Yf~~~g~~~F~p~V~V~F~i~d~-~~~HYHVPLLlSP~gYST 138 (147)
T 4ank_A 92 EIDTKSYWKALGISPFHEHAEVVFTANDS-GPRRYTIAALLSPYSYST 138 (147)
T ss_dssp EECHHHHHHHTTCCCSEEEEEEEEEESTT-SCCEEEEEEEEETTEEEE
T ss_pred EEEHHHHHHhcCCCccccceEEEEEEECC-CCCceeEeEEEcCCCcce
Confidence 999999997 7899999999999986 358999999999999998
No 13
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=94.20 E-value=0.056 Score=42.04 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=46.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 287 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 287 (328)
+++.+|+|. .|+|++|..|++..++- .++-.+.+-.||++|++.-- ..-|.-.+.---+.|
T Consensus 2 ~~~v~V~d~-~GkPV~gA~Vefe~yNy------------ae~~~~~~~~TD~~G~~s~~------~G~Gd~~v~A~k~G~ 62 (82)
T 3e8v_A 2 KGSVLVTDA-EGQPVADATVEFKVYNY------------AEFYTVATKHTDRSGHASLT------AGKGDMLVWASKDGR 62 (82)
T ss_dssp EEEEEEECT-TSCBCTTCEEEEEEEET------------TEEEEEEEEECCTTSEEEEE------CCSEEEEEEEEETTE
T ss_pred cEEEEEEcC-CCCCCCCCEEEEEEEEc------------hheeEEEEEEECCCceEEEE------EcCCceEEEeccCCE
Confidence 578889986 69999999999988873 47788999999999988621 234555555555555
Q ss_pred C
Q 020289 288 C 288 (328)
Q Consensus 288 f 288 (328)
|
T Consensus 63 ~ 63 (82)
T 3e8v_A 63 F 63 (82)
T ss_dssp E
T ss_pred E
Confidence 5
No 14
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=86.19 E-value=0.93 Score=41.65 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=40.8
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCc----cCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEE
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGE----TDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~----~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l 280 (328)
|+..|+|. .|+|.+|..|++..-+..+.-..+.. ..+..+..-+...||+|||..- ..+.||.|.+
T Consensus 81 v~G~V~D~-~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F-----~TI~Pg~Yp~ 150 (241)
T 2bum_B 81 VHGYVRDQ-FGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVF-----RTIKPGPYPW 150 (241)
T ss_dssp EEEEEEET-TSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEE-----EEECCCCEEE
T ss_pred EEEEEECC-CCCCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEE-----EEecCCcccc
Confidence 44569997 79999999999865443211011110 0123444567889999999863 2356777754
No 15
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=86.06 E-value=0.59 Score=43.39 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=35.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+..+.-+.+.......+..-+...||+|||..
T Consensus 105 ~l~G~V~D~-~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~ 160 (257)
T 3o5u_A 105 RFTGSVRDT-SGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIE 160 (257)
T ss_dssp EEEEEEECT-TCCBCTTCEEEEECCCTTSCCTTSCTTSCSSCTTEEEECCCTTSEEE
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCCCCCcCCCCCcccCceeEEEeCCCceEE
Confidence 356889998 79999999999865433211111111111114456788999999985
No 16
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=84.46 E-value=1.2 Score=39.75 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=42.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCC-CCcCCCCCCccCCCCeeEEE
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKD-GRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~D-GR~~~~~~~~~~~~~G~Y~l 280 (328)
-|+..|+|. .|+|.+|..|++..-+....-+.+. .....+..-+...||+| ||..- ..+.||.|..
T Consensus 50 ~v~G~V~D~-~G~Pv~~A~VeiWqada~G~Y~~~~-~~~~~f~~rGr~~TD~~~G~~~F-----~TI~Pg~Y~~ 116 (200)
T 3t63_A 50 LLLGQVYDG-NGHLVRDSFLEVWQADANGEYQDAY-NLENAFNSFGRTATTFDAGEWTL-----HTVKPGVVNN 116 (200)
T ss_dssp EEEECEECT-TSCBCSSCEEEEEECCTTSCCCCBC-CTTSSBCSEEEEECCSSCCSEEE-----EEECCCCEEC
T ss_pred EEEEEEECC-CCCCCCCCEEEEEccCCCCCcCCCC-CCCCCccccceEecCCCCCEEEE-----EEECCcCcCC
Confidence 356889998 6999999999986544321111111 11233556678899999 99863 2356777765
No 17
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=84.15 E-value=1.5 Score=40.20 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=41.8
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCc----cCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEE
Q 020289 209 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGE----TDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKI 280 (328)
Q Consensus 209 iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~----~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l 280 (328)
|+..|+|. .|+|.+|..|++..-+..+.-..+.. ..+..+..-+...||+|||..- ..+.||.|.+
T Consensus 80 l~G~V~D~-~G~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F-----~TI~Pg~Yp~ 149 (238)
T 3t63_M 80 VAGRVVDQ-YGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSF-----RTIKPGPAPW 149 (238)
T ss_dssp EEEEEEET-TSCBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEE-----EEECCCCEEE
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEE-----EEECCcCccC
Confidence 56789995 89999999999865443211011100 0122355667889999999863 2356777764
No 18
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=83.95 E-value=0.75 Score=44.20 Aligned_cols=57 Identities=28% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|+..|+|..+|.|.+|..|.+... -...+||.+|+.. + .+.+|.|+|++.--.
T Consensus 301 ~~i~G~V~D~~~g~pi~~A~V~v~~~-------------------~~~~~Td~~G~y~--~----~l~~G~Y~l~vs~~G 355 (380)
T 1h8l_A 301 RGIWGFVLDATDGRGILNATISVADI-------------------NHPVTTYKDGDYW--R----LLVQGTYKVTASARG 355 (380)
T ss_dssp CEEEEEEEETTTCSBCTTCEEEETTE-------------------EEEEECCTTSEEE--E----CCCSEEEEEEEECTT
T ss_pred ccceEEEEeCCCCCccCceEEEEecC-------------------cceeEECCCEEEE--E----ecCCCcEEEEEEEcC
Confidence 45889999999999999999997311 1246899999873 2 266899999998776
Q ss_pred CC
Q 020289 287 YC 288 (328)
Q Consensus 287 Yf 288 (328)
|-
T Consensus 356 y~ 357 (380)
T 1h8l_A 356 YD 357 (380)
T ss_dssp BC
T ss_pred cc
Confidence 64
No 19
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=83.68 E-value=1.1 Score=40.29 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=35.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc----CCCCceEEEEEEe-CCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET----DVSGWVYQGSSTT-NKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~----~~~~~~~l~~~~T-d~DGR~~ 264 (328)
-|+..|+| ..|+|.+|..|++-.-+....-+.+... ....+..-+...| |+|||..
T Consensus 54 ~v~G~V~D-~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~ 114 (209)
T 2bum_A 54 RLEGQVFD-GLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWS 114 (209)
T ss_dssp EEEECEEC-TTSCBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEE
T ss_pred EEEEEEEC-CCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEE
Confidence 46788999 7999999999998654432110111110 0223444566778 9999885
No 20
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=83.34 E-value=0.86 Score=43.07 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCC-CCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDV-SGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~-~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+| ..|+|.+|..|++..-+..+ .|.+... ..+..-+...||+|||..
T Consensus 135 ~v~G~V~D-~~G~Pv~~A~VEiWqada~G---~Y~~~~~~~~~~~rGr~~TD~~G~y~ 188 (293)
T 1tmx_A 135 WVEGTVTD-TDGNPVPDARIEVWEADDDG---FYDVQYDDDRTAARAHLLSGPDGGYA 188 (293)
T ss_dssp EEEEEEEE-TTSCBCTTCEEEEECCCTTS---CCGGGSSSCCCCSEEEEECCTTSEEE
T ss_pred EEEEEEEC-CCCCCCCCceeEEEecCCCC---cccCCccCCCCCceeEEEeCCCceEE
Confidence 46788999 79999999999986543321 1211111 134456788999999985
No 21
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=82.87 E-value=0.87 Score=45.12 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=38.8
Q ss_pred eeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 212 HVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 212 HVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
++-|. .+.|.+|+.|.|..- ++ ..+++.+||+||.-.- ..+.||.|+|.|..
T Consensus 320 G~~D~-~e~gl~gv~v~L~d~-------------~G--~~v~tttTd~~G~Y~F-----~~L~~G~Y~V~~~~ 371 (429)
T 3irp_X 320 GVQND-SNAAAAGITVNLLDP-------------TG--IRLATTTTDITGHYNF-----DNLTNGNYLVEFVM 371 (429)
T ss_dssp SSSCC-SSCBCTTCEEEEECT-------------TS--CEEEEEECCTTSEEEE-----EEEESEEEEEEECC
T ss_pred CCcCc-CCCCcCCeEEEEEcC-------------CC--CEEEEEEeCCCCeEEe-----CCCCCCcEEEEEEC
Confidence 34454 578999999999631 12 3689999999998752 24678999999975
No 22
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=81.30 E-value=1.2 Score=41.26 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=35.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+..+.-..+. .....+..-+...||+|||..
T Consensus 104 ~l~G~V~D~-~G~Pv~~A~VeiWqada~G~Y~~~~-~~~~~~~~rGr~~Td~~G~y~ 158 (254)
T 2boy_A 104 IFRGEVVDQ-EGAPLADVLLDMWQADAAGEYSFIN-PTLPDYLFRGKIRTDENGRFT 158 (254)
T ss_dssp EEEEEEECT-TSCBCCSCEEEEECCCTTSCCBTTB-TTSCTTTTEEEEECCTTSEEE
T ss_pred EEEEEEECC-CCCCCCCCEEEEEcCCCCCccCCcC-CCCCCCCCeeEEEeCCCceEE
Confidence 457889997 7999999999986543221101111 011234445778999999885
No 23
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=81.12 E-value=1.3 Score=41.82 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=35.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+| ..|+|.+|..|++..-+..+.-+.+. .+...+..-+...||+|||..
T Consensus 131 ~l~G~V~D-~~G~Pv~~A~VeiWqada~G~Y~~~~-~~~~~~~lRGr~~TD~~G~y~ 185 (290)
T 3n9t_A 131 LVYGRVLD-VQGRPVVGAVLDVWQTADNGMYSGQD-PDQPFGNLRGRYRSDNDGCFA 185 (290)
T ss_dssp EEEEEEEE-TTSCBCSSCEEEEECCCTTSCCTTTS-TTSCTTTTEEEEECCTTSEEE
T ss_pred EEEEEEEC-CCCCCCCCCEEEEEccCCCCCcCCCC-CCCCCCCceeEEEeCCCceEE
Confidence 35688999 57999999999986543321111111 112234455788999999985
No 24
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=80.92 E-value=1.2 Score=43.68 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.7
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
...|+..|.| .+|.|.+|..|.+... -...+||.||... + .+.||.|+|++.--
T Consensus 320 ~~~i~G~V~D-~~g~pi~gA~V~v~~~-------------------~~~~~Td~~G~y~--~----~l~~G~Y~l~vs~~ 373 (439)
T 2nsm_A 320 HQGIKGMVLD-QNYNNLANAVISVSGI-------------------NHDVTSGDHGDYF--R----LLLPGIYTVSATAP 373 (439)
T ss_dssp SCSEEEEEEC-TTSCBCTTCEEEETTE-------------------EEEEECCTTSEEE--E----CCCSEEEEEEEECT
T ss_pred ccceEEEEEc-CCCCCccceEEEEEcc-------------------cceeEECCCCeEE--E----ccCCeeEEEEEEec
Confidence 3569999999 5999999999987311 1247899999873 2 25789999999876
Q ss_pred CCC
Q 020289 286 KYC 288 (328)
Q Consensus 286 ~Yf 288 (328)
.|-
T Consensus 374 Gy~ 376 (439)
T 2nsm_A 374 GYD 376 (439)
T ss_dssp TEE
T ss_pred Cce
Confidence 664
No 25
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=80.02 E-value=1.9 Score=40.05 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=35.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc--CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET--DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~--~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+..+ .|.+. +...+..-+...||+|||..
T Consensus 101 ~v~G~V~D~-~G~Pv~gA~VeiWqad~~G---~Y~~~~~~~~~~~~RG~~~TD~~G~y~ 155 (260)
T 3th1_A 101 IIRGTVRSD-TGELLAGAVIDVWHSTPDG---LYSGIHDNIPVDYYRGKLVTDSQGNYR 155 (260)
T ss_dssp EEEEEEEET-TSCBCSSCEEEEEECCTTS---CCTTTSTTCCTTBTEEEEECCTTSEEE
T ss_pred EEEEEEECC-CCCCcCCcEEEEEecCCCC---cccCcCCCCCCCCCceEEEeCCCCEEE
Confidence 357889995 6999999999986544321 12111 11233345778999999985
No 26
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=79.91 E-value=1.8 Score=41.22 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=36.3
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+..+.-..+... ....+..-+...||+|||..
T Consensus 135 ~l~G~V~D~-~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~ 191 (311)
T 1dmh_A 135 ILHGTIFDA-DGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYR 191 (311)
T ss_dssp EEEEEEECT-TSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEE
T ss_pred EEEEEEEcC-CCCCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEE
Confidence 356889996 599999999998654432211111111 02334556778999999985
No 27
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=79.82 E-value=1.4 Score=42.04 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=39.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEE
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 279 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 279 (328)
-|+..|+|. .|+|.+|..|++..-+..+.-..+. .....+..-+...||+|||..-. .+.||.|.
T Consensus 138 ~v~G~V~D~-~G~Pv~gA~VeiWqada~G~Y~~~~-~~~~~~~~rGr~~TD~~G~y~F~-----TI~Pg~Y~ 202 (312)
T 2xsu_A 138 IIEGTVTDT-EGNIIEGAKVEVWHANSLGNYSFFD-KSQSDFNLRRTILTDVNGKYVAL-----TTMPVGYG 202 (312)
T ss_dssp EEEEEEEET-TSCBCTTCEEEEECCCTTSCCBTTB-TTSCTTTTEEEEECCTTSEEEEE-----EECCCCEE
T ss_pred EEEEEEECC-CCCCCCCCEEEEEecCCCCcccCCC-CCCCCCCCeeEEEeCCCceEEEE-----EECcCccc
Confidence 467889996 8999999999986533221101111 11223444577899999998521 24466664
No 28
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=79.26 E-value=1.6 Score=40.88 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=35.7
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|.. |+|.+|..|++..-+..+.-+.+.. ....+..-+...||+|||..
T Consensus 133 ~l~G~V~D~~-G~Pv~~A~VeiWqada~G~Ys~~~~-~~~~~~lRGr~~TD~dG~y~ 187 (280)
T 3hhy_A 133 VFSGQVTDLD-GNGLAGAKVELWHADNDGYYSQFAP-HLPEWNLRGTIIADEEGRYE 187 (280)
T ss_dssp EEEEEEECTT-SCBCSSCEEEEECCCTTSCCTTSST-TSCTTTTEEEEECCTTSEEE
T ss_pred EEEEEEECCC-CCCCCCcEEEEEecCCCCCCCCCCC-CCCCCcceEEEEeCCCceEE
Confidence 3568899975 9999999999865433211111111 12334456788999999985
No 29
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=79.07 E-value=1.5 Score=41.75 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=35.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
-|+..|+|. .|+|.+|..|++..-+..+.-..+. .....+..-+...||+|||..
T Consensus 134 ~v~G~V~D~-~G~Pv~gA~VeiWqada~G~Y~~~~-~~~~~f~~rGr~~TD~~G~y~ 188 (311)
T 2azq_A 134 FLQGQVFDA-NGKPLAGATVDLWHANTQGTYSYFD-STQSEFNLRRRIITDAEGRYR 188 (311)
T ss_dssp EEEEEEECS-SSCBCTTCEEEEECCCTTSCCBTTB-TTSCTTTTEEEEECCTTCEEE
T ss_pred EEEEEEEcC-CCCCCCCceeEEEecCCCCccCCCC-CCCCCCCCeeEEEeCCCceEE
Confidence 457889997 5999999999986544321111111 112334456788999999985
No 30
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=76.70 E-value=7 Score=36.04 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCCceeeeccCCCCCCCC------CCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEE
Q 020289 206 RLPITTHVLDVSQGSPAA------GVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 279 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAa------gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 279 (328)
.+.|+-+|+|..+|.|.. |++|+|+.+. |+.+... +-.-....||-..+ ..+=.|.|+
T Consensus 9 ~s~l~G~ivd~~tGE~i~~~~g~~gv~i~l~E~g-------~~~~~~~----~~~~~v~~DGtf~N-----t~lF~G~Yk 72 (249)
T 4eiu_A 9 SETIWGEVVDEATGKRVLTDQGSEGIRVRLTELS-------WGDNVQH----NPDFYCMMDGTFQN-----TKIFKGEYN 72 (249)
T ss_dssp CEEEEEEEEETTTCCBCCCCSSTTSCEEEEEECC-------SSCCBCC----SCCEECCTTSEEEE-----EEECSEEEE
T ss_pred cceeEEEEEECCCCCEeeeccCCCceEEEEEecc-------cccCCCc----cCCEEECCCCceee-----eeEEcceeE
Confidence 356999999999998864 5888887642 3222111 10236788887652 123479999
Q ss_pred EEEeeCCCC
Q 020289 280 ITFNTGKYC 288 (328)
Q Consensus 280 l~F~tg~Yf 288 (328)
|++. |.|+
T Consensus 73 i~~~-Gpf~ 80 (249)
T 4eiu_A 73 VRID-GPFI 80 (249)
T ss_dssp EEEE-SSBC
T ss_pred EEeC-CCee
Confidence 9998 7654
No 31
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=76.22 E-value=2.2 Score=41.92 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|+-.|.|. +|.|.+|..|.+... . . ...+||.||... . .+.||.|+|++.--.
T Consensus 337 ~gv~G~V~D~-~G~pi~gA~V~v~g~--~------------~----~~~~Td~~G~y~--~----~l~pG~Y~l~vs~~G 391 (435)
T 3mn8_A 337 IGIKGLVTDA-SGFPIADANVYVAGL--E------------E----KPMRTSKRGEYW--R----LLTPGLYSVHASAFG 391 (435)
T ss_dssp SSEEEEEECS-SSCBCTTCEEEETTC--T------------T----SCEECCTTCEEE--E----CCCSEEEEEEEEBTT
T ss_pred ceeEEEEECC-CCCccCceEEEEecc--c------------c----cceEeCCCCeEE--E----ecCCCcEEEEEEEcc
Confidence 4589999997 899999999998311 0 1 135899999872 2 256899999999888
Q ss_pred C
Q 020289 287 Y 287 (328)
Q Consensus 287 Y 287 (328)
|
T Consensus 392 y 392 (435)
T 3mn8_A 392 Y 392 (435)
T ss_dssp B
T ss_pred c
Confidence 8
No 32
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=73.90 E-value=18 Score=27.59 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=45.4
Q ss_pred eccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEE--EEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCCCCCC
Q 020289 213 VLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQG--SSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPE 290 (328)
Q Consensus 213 VLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~--~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~ 290 (328)
++|. .++|..+..+.+...+.. +. .+. ...++.+|-...-+...+....|.|+|+..++.=
T Consensus 25 ~~~~-~~~p~~~~~~~v~l~dp~-----------g~--~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~~--- 87 (102)
T 2p9r_A 25 SMDE-NFHPLNELIPLVYIQDPK-----------GN--RIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSG--- 87 (102)
T ss_dssp EECG-GGCBCCCEEEEEEEECTT-----------SC--EEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTTS---
T ss_pred EECC-CCcCCCCCceEEEEECCC-----------CC--EEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECCC---
Confidence 5665 578988876666655431 22 233 3567888877543333456678999999988641
Q ss_pred CCCceeEEEEEeec
Q 020289 291 GFFPYVSIVFEIRE 304 (328)
Q Consensus 291 ~F~p~V~v~F~i~~ 304 (328)
+.....|.|.+
T Consensus 88 ---~~~~~~F~Vee 98 (102)
T 2p9r_A 88 ---GRTEHPFTVEE 98 (102)
T ss_dssp ---CEEEEEEEECC
T ss_pred ---CeEEEEEEEEE
Confidence 14667788754
No 33
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=66.94 E-value=4.8 Score=39.30 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=43.3
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
...|+-.|.| .+|.|.+|+.|.+.. . ...+ ..+||.||... + .+.||.|.|++.--
T Consensus 295 ~~~I~G~V~D-~~g~pi~gA~V~v~g---~----------~~~~----~~~Td~~G~y~--~----~l~~G~Y~l~vs~~ 350 (426)
T 1uwy_A 295 HLGVKGQVFD-QNGNPLPNVIVEVQD---R----------KHIC----PYRTNKYGEYY--L----LLLPGSYIINVTVP 350 (426)
T ss_dssp GCSEEEEEEC-TTSCBCCSCEEEETT---C----------CCSS----CCBCCTTCEEE--E----CCCSEEEEEEEECS
T ss_pred cceeEEEEEC-CCCCccCceEEEEEe---c----------cccc----eeEeCCCCEEE--e----ccCCeeEEEEEEEc
Confidence 3468999999 589999999998731 1 0111 36899999874 2 25689999999876
Q ss_pred CCC
Q 020289 286 KYC 288 (328)
Q Consensus 286 ~Yf 288 (328)
.|-
T Consensus 351 Gy~ 353 (426)
T 1uwy_A 351 GHD 353 (426)
T ss_dssp SSC
T ss_pred Ccc
Confidence 664
No 34
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=64.47 E-value=4.3 Score=36.41 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=39.0
Q ss_pred CCCCCCCCCEEEEEEecCCCCCCCCCccCCCCc------------eEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 217 SQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGW------------VYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 217 ~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~------------~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
..|.|.+|+...|+...+... ......| ..+.+.+||+||.+.- ..+.+|.|.|+=-.
T Consensus 27 ~~g~~L~Ga~F~l~~~~~~~~-----~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~-----~~L~~G~Y~v~Et~ 96 (239)
T 2pz4_A 27 KEGTPIEGVLYQLYQLKSTED-----GDLLAHWNSLTITELKKQAQQVFEATTNQQGKATF-----NQLPDGIYYGLAVK 96 (239)
T ss_dssp SSCEECSSCEEEEEEESCCCC-----TTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEE-----EEEESEEEEEEEEE
T ss_pred CCCCCcCCcEEEEEEecCccc-----ccccchhhhhchhhhhccCCceeEEEECCCCeEEE-----CCCCCeeEEEEEEE
Confidence 468999999999998753100 0000123 3578889999998852 34678999986543
No 35
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=61.65 E-value=3.6 Score=33.61 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCCCCCC--CCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020289 217 SQGSPAA--GVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 264 (328)
Q Consensus 217 ~~G~PAa--gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 264 (328)
..|+||+ +|+|.|+..+.. . ...=.+++++.||.+|+..
T Consensus 13 C~~~Pa~~~~V~V~L~d~~~~-------~--~d~Ddll~~~~Td~~G~F~ 53 (117)
T 3uaf_A 13 CPTDPEAVKKVHIDLWDAAAA-------A--AESDDLMGRTWSDRNGNFQ 53 (117)
T ss_dssp CTTCGGGGSSCEEEEEEHHHH-------H--TTSCCEEEEEECCTTSEEE
T ss_pred eCCccCCCCCEEEEEEecccc-------c--CCchHhheeeEECCCCEEE
Confidence 4689986 788888642110 0 0112368999999999874
No 36
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=50.65 E-value=32 Score=34.63 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 205 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
.|+.|+-+|. |.|++.+.|.+.. .. +-+-| +.||+||...- ..+.||.|+|+...
T Consensus 256 ~RGtVsG~V~----G~~~~~~avv~~~--~k---------~~qyw-----t~td~~G~FtI-----~~V~pGtY~L~a~~ 310 (508)
T 1nkg_A 256 GRGKVAGTAS----GADSSMDWVVHWY--ND---------AAQYW-----TYTSSSGSFTS-----PAMKPGTYTMVYYQ 310 (508)
T ss_dssp GCBEEEEEEE----SSCTTSCEEEEEE--CS---------SCEEE-----EECCTTCEEEC-----CCBCSEEEEEEEEE
T ss_pred cccEEEEEEc----CccCCceEEEEEc--CC---------CceeE-----EEECCCCcEEe-----CCcCCceEEEEEEE
Confidence 3567888877 8887666665532 11 12334 78999998742 35789999998887
Q ss_pred CCC
Q 020289 285 GKY 287 (328)
Q Consensus 285 g~Y 287 (328)
..+
T Consensus 311 ~G~ 313 (508)
T 1nkg_A 311 GEY 313 (508)
T ss_dssp TTE
T ss_pred Cce
Confidence 655
No 37
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=47.92 E-value=15 Score=39.50 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee
Q 020289 205 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 284 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 284 (328)
..+.|..+-.| ..|.|.+|-..+|+.-. .-..+.+.+||+||.+.- ..+.+|.|.|+--.
T Consensus 46 ~~G~~~i~K~d-~~~~~L~GA~F~l~~~~--------------~~~~~~~~tTd~~G~~~~-----~~L~~G~Y~l~Et~ 105 (893)
T 2ww8_A 46 AIGKVVIKETG-EGGALLGDAVFELKNNT--------------DGTTVSQRTEAQTGEAIF-----SNIKPGTYTLTEAQ 105 (893)
T ss_dssp CCEEEEEEEEC-STTCBCCCCEEEEEETT--------------TCCEEEEECCTTTCEEEE-----EEECSEEEEEEEEE
T ss_pred ceEEEEEEEEC-CCCCccCCCEEEEEECC--------------CCeEEEEEEECCCCeEEE-----CCCCCCcEEEEEcc
Confidence 45678899999 68999999999987632 123467789999998852 35779999997665
Q ss_pred --CCCCCCCCCceeEEEEEeec
Q 020289 285 --GKYCPEGFFPYVSIVFEIRE 304 (328)
Q Consensus 285 --g~Yf~~~F~p~V~v~F~i~~ 304 (328)
..|-. ..-++.|+|.+
T Consensus 106 AP~GY~l----~~~~~~v~v~~ 123 (893)
T 2ww8_A 106 PPVGYKP----STKQWTVEVEK 123 (893)
T ss_dssp CCTTBCC----CCCEEEEEECT
T ss_pred CCCceec----CCccEEEEECC
Confidence 34532 22355666654
No 38
>3uxf_A Fimbrial subunit type 1; adhesin, isopeptide, GRAM-positive, beta sandwich, surface, cell adhesion; 1.60A {Actinomyces oris}
Probab=46.53 E-value=12 Score=37.39 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCc----------------e--EEEEEEeCCCCCcCCCCCCccCCCCee
Q 020289 216 VSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGW----------------V--YQGSSTTNKDGRCGQLMGMIEDLNPGF 277 (328)
Q Consensus 216 t~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~----------------~--~l~~~~Td~DGR~~~~~~~~~~~~~G~ 277 (328)
...|.|..||..+++++. . +..+ ..+| . ...+..||+||.+.- - ...+..|.
T Consensus 68 ~~~~~pl~Gv~Ftv~kv~-~-dl~t-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~tT~~~G~~~f-~--~~~L~~G~ 137 (488)
T 3uxf_A 68 QAECKPVSDVEFTITKLN-V-DLTT-----YDGWKTLADLKGDVVKAGALKSTTVQKITTGANGLASF-T--DAQTEVGA 137 (488)
T ss_dssp CSCCCBCCSCEEEEEEES-C-CTTS-----HHHHHHHHHTTTCHHHHGGGEEEEEEEEECCTTCEEEE-C--TTTCCSEE
T ss_pred CCCCcccCCcEEEEEEec-c-cccC-----HHHHHHHhhcccccccccccccccceEeEECCCceEEE-C--CCccCCEE
Confidence 346789999999999983 1 1111 1122 1 134568999998752 1 12377899
Q ss_pred EEEEE
Q 020289 278 YKITF 282 (328)
Q Consensus 278 Y~l~F 282 (328)
|.++=
T Consensus 138 YLv~E 142 (488)
T 3uxf_A 138 YLVSE 142 (488)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 97754
No 39
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=45.45 E-value=15 Score=34.21 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=44.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..++..|.| .|.|.+|+.|.+..-. + -..-.+..||+||...--+ .+..+|.+.++-.++.
T Consensus 21 ~t~tatV~D--~gnpv~g~~V~fs~~~-------------G-~l~~~~~~Td~~G~atvtl---tst~aG~~~VtA~v~~ 81 (282)
T 1f00_I 21 ITYTVKVMK--GDKPVSNQEVTFTTTL-------------G-KLSNSTEKTDTNGYAKVTL---TSTTPGKSLVSARVSD 81 (282)
T ss_dssp EEEEEEEEE--TTEECTTCEEEEEESS-------------S-EESCSEEECCTTSEEEEEE---ECSSCEEECEEEEETT
T ss_pred EEEEEEEEE--CCcccCCcEEEEEcCC-------------C-ccccceeEECCCcEEEEEE---EcCCceEEEEEEEECC
Confidence 468899999 9999999999975421 1 1112357999999887433 2456899999988876
No 40
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=43.27 E-value=38 Score=28.04 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 020289 87 ESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKI 146 (328)
Q Consensus 87 ~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kI 146 (328)
+..-+.|...=.+|++.+|-||+| .|.+.-++|++-+..+....+.|.+. .++.|.
T Consensus 64 P~l~~~L~~~i~~wE~e~g~~Flv--~G~~~le~l~eqw~~~r~~KE~eK~~--R~~kk~ 119 (130)
T 3nrx_A 64 PKLEEELKARIELWEQEHSKAFMV--NGQKFMEYVAEQWEMHRLEKERAKQE--RQLKNK 119 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEE--TTEEHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCeeeE--cCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344567888889999999999996 88888888877666666667777766 555554
No 41
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=42.04 E-value=27 Score=34.81 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhcC------CeEEEEecCCCHHHHHHHHHH
Q 020289 87 ESSSQELSDWNNRYRLRFG------FIFIICASGRTAAEILAELKK 126 (328)
Q Consensus 87 ~~~~~~L~~lN~~Y~eKFG------fpFVIcv~g~s~~eIL~~l~~ 126 (328)
+-..++|.++++.|.+++| .|++|...+.+.+.+.+.+++
T Consensus 138 ~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~ 183 (486)
T 2yqc_A 138 QIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIE 183 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhh
Confidence 4456889999999999999 999999999999999999986
No 42
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=41.89 E-value=99 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhccc
Q 020289 84 TANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAK 158 (328)
Q Consensus 84 ~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~~ 158 (328)
=+++++..+|.++=. .|.|+++|+.-+-.=+.+-.....+.|-+++..-|+-.|..+++++
T Consensus 20 WLt~eQk~EI~kMk~--------------~gksk~~v~~KI~efye~l~gd~K~~a~e~L~~~C~~~lk~iiG~e 80 (134)
T 2xv9_A 20 WLSQEQKDELLKMKK--------------DGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEE 80 (134)
T ss_dssp TSCHHHHHHHHHHHH--------------TTCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HCCHHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 468888888866543 7899999999999999999999999999999999999999999873
No 43
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=39.62 E-value=17 Score=34.59 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEee-
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT- 284 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t- 284 (328)
++.|..+=.|. .|.|.+|....|+..++ .....+.+||+||.+.- ..+.+|.|.|+=-.
T Consensus 7 ~g~~~i~K~d~-~~~~L~GA~F~l~~~~g--------------~~~~~~~tTd~~G~~~~-----~~L~~G~Y~~~Et~a 66 (355)
T 3kpt_A 7 RGAVDLIKTGV-NEKAMAGAVFSLFKKDG--------------TEVKKELATDANGHIRV-----QGLEYGEYYFQETKA 66 (355)
T ss_dssp EEEEEEEEECG-GGCBCCSCEEEEEETTS--------------CEEEEEEECCTTSEEEE-----EEEESEEEEEEEEEC
T ss_pred EEEEEEEEECC-CCCCcCCcEEEEEECCC--------------CEEEEEEEECCCCeEEE-----CCcCCceEEEEEEeC
Confidence 45566666786 69999999999987321 12336679999998752 35678999986533
Q ss_pred -CCCCCCCCCceeEEEEEeec
Q 020289 285 -GKYCPEGFFPYVSIVFEIRE 304 (328)
Q Consensus 285 -g~Yf~~~F~p~V~v~F~i~~ 304 (328)
..|-. ..-++.|.|..
T Consensus 67 P~GY~~----~~~~~~f~v~~ 83 (355)
T 3kpt_A 67 PKGYVI----DPTKREFFVKN 83 (355)
T ss_dssp CTTBCC----CCCCEEEEECS
T ss_pred CCCeEc----CCceEEEEEec
Confidence 23432 22346666665
No 44
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=39.30 E-value=9.3 Score=30.13 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=28.9
Q ss_pred cCCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHH
Q 020289 7 VLDEEELLGCCG-STKFAKEMASASPFASLNQAV 39 (328)
Q Consensus 7 ~m~~~~f~~~~g-sp~~A~~~~~~RPF~s~~~L~ 39 (328)
+++.++|..+-| .+..|+++...+||.|+++|.
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~ 55 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVL 55 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGG
T ss_pred cCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 367788888778 799999999999999999986
No 45
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=36.26 E-value=49 Score=32.84 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289 207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 286 (328)
Q Consensus 207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 286 (328)
..|+.+|.|. .|.|.+|..|.+..-. +.-..-.+..||+||...--+. ...+|.|.|+-..+.
T Consensus 28 ~~ltatV~D~-~Gnpv~g~~Vtf~~~~-------------g~~~~~~t~~Td~~G~a~~tlt---st~aG~~~VtAt~~g 90 (492)
T 1cwv_A 28 ITVEFTVADF-EGKPLAGQEVVITTNN-------------GALPNKITEKTDANGVARIALT---NTTDGVTVVTAEVEG 90 (492)
T ss_dssp EEEEEEEECT-TSCBCCSCEEEEECCT-------------TCBSCEEEEECCTTSEEEEEEB---CSSCEEEEEEEEETT
T ss_pred EEEEEEEEcC-CCCCCCCCEEEEEECC-------------CccccccceeeCCCceEEEEEE---cCcceEEEEEEEECC
Confidence 4689999997 8999999999985321 1111124679999999874332 345899988776653
No 46
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X*
Probab=35.20 E-value=10 Score=37.31 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCce--------------------EEEEEEeCCCCCcCCCCCCccCCCC
Q 020289 216 VSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWV--------------------YQGSSTTNKDGRCGQLMGMIEDLNP 275 (328)
Q Consensus 216 t~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~--------------------~l~~~~Td~DGR~~~~~~~~~~~~~ 275 (328)
...|.|.+||..+++++.+.+ ..+ ..+|. ...+..||++|.+.- ..+..
T Consensus 28 ~~~~~~l~Gv~Ftv~kv~~id-l~t-----~~gw~~~~~l~~~~~~~~~~~~~~~~~~~~~Td~~G~~~f-----~~L~~ 96 (436)
T 3hr6_A 28 SIGLPKVDGMSFTLYRVNEID-LTT-----QAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKF-----DNLTP 96 (436)
T ss_dssp --CCCBCSSCEEEEEEETTCC-TTS-----HHHHHHHTTCCHHHHEETTEECTTEEEEEEEECBTTBEEE-----EEECS
T ss_pred CCCCCccCCeEEEEEEecccC-CcC-----HHHHHHHHhcchhhhhccccccccccceeEEECCCceEEE-----CCCCC
Confidence 346889999999999995421 111 12231 123679999998852 24678
Q ss_pred eeEEEEEe
Q 020289 276 GFYKITFN 283 (328)
Q Consensus 276 G~Y~l~F~ 283 (328)
|.|-++=-
T Consensus 97 G~YLV~et 104 (436)
T 3hr6_A 97 ALYLVVQE 104 (436)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99976543
No 47
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=33.98 E-value=20 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHH
Q 020289 8 LDEEELLGCCG-STKFAKEMASASPFASLNQAV 39 (328)
Q Consensus 8 m~~~~f~~~~g-sp~~A~~~~~~RPF~s~~~L~ 39 (328)
++.+++...-| .+..|.++.+.|||.|+++|.
T Consensus 24 a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~ 56 (75)
T 2duy_A 24 ASLEELMALPGIGPVLARRIVEGRPYARVEDLL 56 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGG
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHH
Confidence 57777777777 799999999999999999886
No 48
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=30.89 E-value=14 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=29.0
Q ss_pred cCCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHHH
Q 020289 7 VLDEEELLGCCG-STKFAKEMASASPFASLNQAVS 40 (328)
Q Consensus 7 ~m~~~~f~~~~g-sp~~A~~~~~~RPF~s~~~L~~ 40 (328)
+.+.++|..+-| -|..|+++..+.||.|+++|.+
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~ 93 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN 93 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 367778877777 7999999999999999999973
No 49
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=30.51 E-value=61 Score=25.74 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCCCceeeeccCCCCCCC--CCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEE
Q 020289 205 TRLPITTHVLDVSQGSPA--AGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITF 282 (328)
Q Consensus 205 ~~~~iTtHVLDt~~G~PA--agv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 282 (328)
+.+|.+|+|.|...+... -|-++.+.. ... +.+...|.-.+++.+|+..... ......|+|++.|
T Consensus 9 pGSPF~~~v~~~~~~~~~~~vg~~~~f~v-~~~----------~ag~~~l~v~v~~PsG~~~~~~--v~~~~~g~y~v~f 75 (116)
T 2dmc_A 9 PGSPFTAKITDDSRRCSQVKLGSAADFLL-DIS----------ETDLSSLTASIKAPSGRDEPCL--LKRLPNNHIGISF 75 (116)
T ss_dssp CCCCSSCCCCCCCCSSCCCCTTSCEEEEC-CCS----------CCCSTTBCCEEECTTSCBCCEE--EEEETTTEEEEEE
T ss_pred CCCCEEEEEcCCCccccccccCCceEEEE-Eec----------CCCCCCEEEEEECCCCCEEeeE--EEeCCCCeEEEEE
Confidence 457999999988775421 233344432 111 1122335567889999764321 1234578999976
Q ss_pred ee
Q 020289 283 NT 284 (328)
Q Consensus 283 ~t 284 (328)
-.
T Consensus 76 tP 77 (116)
T 2dmc_A 76 IP 77 (116)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 50
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=28.25 E-value=31 Score=32.65 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=49.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceE----EEEEEeCCCCCcCCCCCCccCCCCeeEEEEEe
Q 020289 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVY----QGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 283 (328)
Q Consensus 208 ~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~----l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 283 (328)
.|..+=.|...|.|.+|....|+.-++ .+.. ..+.+||+||.+.- ..+..|.|.|+=-
T Consensus 252 ~i~i~K~d~~~~~~L~GA~F~l~~~~g-------------~~~~~~~~~~~~~td~~G~~~~-----~~L~~G~Y~l~E~ 313 (355)
T 3kpt_A 252 IIELTKIDSANKNKMKGAEFVLKDNNG-------------KIVVVAGKEVTGVSDENGVIKW-----SNIPYGDYQIFET 313 (355)
T ss_dssp EEEEEEEETTTCCBCSCCEEEEEETTS-------------CBCBSSSSBCEEECCTTSEEEE-----EEEESSEEEEEEE
T ss_pred ceEEEEEeCCCCcccCCCEEEEEeCCC-------------CEEEeccceEEEEECCCCeEEE-----CcCCCceEEEEEE
Confidence 355555688889999999999985322 2111 11578999998742 3466899998754
Q ss_pred eCCCCC----C--CC-CceeEEEEEeec
Q 020289 284 TGKYCP----E--GF-FPYVSIVFEIRE 304 (328)
Q Consensus 284 tg~Yf~----~--~F-~p~V~v~F~i~~ 304 (328)
...-|. . .+ ...-+|.|.|.+
T Consensus 314 ~aP~~~~~~~~~~GY~~~~~~~~~~i~~ 341 (355)
T 3kpt_A 314 KAPTYTKEDGTKTSYQLLKDPIDVKISE 341 (355)
T ss_dssp ECCEEECTTCCEEECCCCCSCEEEECBT
T ss_pred ECCCCcccccccCCcccCCCcEEEEEcc
Confidence 443310 0 11 124577888876
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.24 E-value=37 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhcCCe
Q 020289 90 SQELSDWNNRYRLRFGFI 107 (328)
Q Consensus 90 ~~~L~~lN~~Y~eKFGfp 107 (328)
.-++.+|....++|||.+
T Consensus 15 vlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 15 VSELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 466778899999999986
No 52
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=25.27 E-value=59 Score=32.25 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=43.3
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeC
Q 020289 206 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 285 (328)
Q Consensus 206 ~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 285 (328)
...|+..|.|. .|.|.+|+.|.+..-.+ .+...+||+||.+.--+. .-.+|.|.++..++
T Consensus 125 ~~tltatv~Da-~GNpv~g~~Vtf~~~~g----------------~~~~~Ttd~~G~at~tlt---s~~aG~~tVtA~v~ 184 (492)
T 1cwv_A 125 ASTITLELKDT-YGDPQAGANVAFDTTLG----------------NMGVITDHNDGTYSAPLT---STTLGVATVTVKVD 184 (492)
T ss_dssp CEEEEEECBBT-TSCBCCSCCEEEEESSS----------------EECCCEECSSSEEEEEEE---CSSCEEEEEEEEET
T ss_pred eEEEEEEEEcC-CCCCcCCcEEEEEECCC----------------ceeeeEecCCcEEEEEEE---ccCceEEEEEEEEC
Confidence 35788999996 79999999999864211 133456799999875332 23689999987764
Q ss_pred C
Q 020289 286 K 286 (328)
Q Consensus 286 ~ 286 (328)
.
T Consensus 185 g 185 (492)
T 1cwv_A 185 G 185 (492)
T ss_dssp T
T ss_pred C
Confidence 3
No 53
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=22.76 E-value=1.3e+02 Score=26.61 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHhcCCeEEEEe--cCCCHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHH
Q 020289 100 YRLRFGFIFIICA--SGRTAAEILAELKKRYTN---------RPIIEFEIAAQEQMK 145 (328)
Q Consensus 100 Y~eKFGfpFVIcv--~g~s~~eIL~~l~~Rl~N---------~~~~E~~~Al~Ev~k 145 (328)
+.+++|+||+-|. +|...++++..+.+.+.. ....|++.++.++..
T Consensus 135 l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~~~~~~~i~~~~~ 191 (258)
T 3a1s_A 135 LQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYGEKVESEIKKVEN 191 (258)
T ss_dssp HHHHHCSCEEECCTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhhccccCCCcccCCchhHHHHHHHHHH
Confidence 4556789987665 466788999988776642 356677777776654
No 54
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=22.48 E-value=2.3e+02 Score=28.42 Aligned_cols=85 Identities=18% Similarity=0.058 Sum_probs=47.4
Q ss_pred CCCCceee----eccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeC-CCCCcCCCCCCccCCCCeeEE
Q 020289 205 TRLPITTH----VLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTN-KDGRCGQLMGMIEDLNPGFYK 279 (328)
Q Consensus 205 ~~~~iTtH----VLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td-~DGR~~~~~~~~~~~~~G~Y~ 279 (328)
-|+.=|.| ++| ...+|+.+ +|.+...+.. +.-..-....+| .+|-...-+...+....|.|+
T Consensus 117 YrPGqtV~~r~i~~d-~~~~p~~~-~v~v~l~dP~-----------g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~ 183 (645)
T 2hr0_A 117 YTPGSTVLYRIFTVN-HKLLPVGR-TVMVNIENPE-----------GIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWK 183 (645)
T ss_dssp CCTTSEEEEEEEEEC-TTSCBCCC-EEEEEEECTT-----------SCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEE
T ss_pred CCCCCEEEEEEEEEC-CCCcccCc-eEEEEEECCC-----------CCEEEEEEeeccccCCeEEEEEECCCccccccEE
Confidence 34555555 677 57889775 6777665431 221111233455 778654322233456789999
Q ss_pred EEEeeCC--------CCC--CCCCceeEEEEEe
Q 020289 280 ITFNTGK--------YCP--EGFFPYVSIVFEI 302 (328)
Q Consensus 280 l~F~tg~--------Yf~--~~F~p~V~v~F~i 302 (328)
|+..++. .|. +--.|..+|.+..
T Consensus 184 I~v~~~~~~~~~~~~~F~VeeYvlP~feV~i~~ 216 (645)
T 2hr0_A 184 IRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEP 216 (645)
T ss_dssp EEEEETTCTTSEEEEEEECCCSCCCCCEEEEEE
T ss_pred EEEEECCCCCceEEEEEEEeeccCCeEEEEEEc
Confidence 9998753 122 3345565666544
No 55
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.70 E-value=56 Score=20.31 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 020289 90 SQELSDWNNRYRLRFG 105 (328)
Q Consensus 90 ~~~L~~lN~~Y~eKFG 105 (328)
.-++.+|-.+.++|||
T Consensus 15 vlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 15 VSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4567788899999998
Done!