BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020290
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFR 204
V S+ C+ A GC+ + ++EK DH C + P C CP A+C + GS + H
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 205 GVHKH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD--------- 240
HK E+ V+ D V+ + H +++L++++ D
Sbjct: 61 HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120
Query: 241 -LFILNNSTEPDGYRISVN 258
L E YR+ +N
Sbjct: 121 QLIGTRKQAENFAYRLELN 139
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFRGVH 207
S+ C+ A GC+ + ++EK +H C + P C CP A+C + GS + H H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 208 KH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD----------LF 242
K E+ V+ D V+ + H +++L++++ D L
Sbjct: 61 KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120
Query: 243 ILNNSTEPDGYRISVN 258
E YR+ +N
Sbjct: 121 GTRKQAENFAYRLELN 136
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFRGVH 207
S+ C+ A GC+ + ++EK +H C + P C CP A+C + GS + H H
Sbjct: 2 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 208 KH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD----------LF 242
K E+ V+ D V+ + H +++L++++ D L
Sbjct: 62 KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 121
Query: 243 ILNNSTEPDGYRISVN 258
E YR+ +N
Sbjct: 122 GTRKQAENFAYRLELN 137
>pdb|2ZVR|A Chain A, Crystal Structure Of A D-Tagatose 3-Epimerase-Related
Protein From Thermotoga Maritima
pdb|2ZVR|B Chain B, Crystal Structure Of A D-Tagatose 3-Epimerase-Related
Protein From Thermotoga Maritima
Length = 290
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 75 DLLKHFNNGPVTVTLNDPEVLD---CPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPS 131
+L K V + + DP ++D + E LN+P+ G G + S
Sbjct: 48 ELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLPICAIGTGQAY--------LADGLS 99
Query: 132 CRLPNGHSRSTAMEKVIESIQVA 154
PN R A+E+V++ +VA
Sbjct: 100 LTHPNDEIRKKAIERVVKHTEVA 122
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 93 EVLDCPVCYEPLNIPV-YQCGNGHVVCHRCCCDLMN------KCPSCR---LPNGHSRST 142
++L+CP+C E + PV +C H+ C C L+N +CP C+ ST
Sbjct: 20 KILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 143 AMEKVIES-IQVACE-NADYGCKEKMSYSEKYDHGR 176
+++E +++ C D G + Y+ Y+ +
Sbjct: 78 RFSQLVEELLKIICAFQLDTG----LEYANSYNFAK 109
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 18/91 (19%)
Query: 201 QHFRGVHKHAAE---EFVYD---KVLRITL--SVHHDLIILQEEKNGDLFILNNSTEPDG 252
Q F+G +A E + +YD K+L++ ++H+DL IL+E++ D FIL N + D
Sbjct: 22 QSFKG-GNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGAD-FILLNFSFKDN 79
Query: 253 YRIS---VNCIAPSCKGGVVYSIVAKSGGAV 280
+ V ++P GG V GGA+
Sbjct: 80 FPFDPPFVRVVSPVLSGGYVL-----GGGAI 105
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 95 LDCPVCYEPLNIPVYQCGNGHVVCHRC---CCDLMNK-CPSCRLP----NGHSRSTAMEK 146
+ C +C L PV + H+ C C C +M CPSCR P + S +
Sbjct: 24 ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82
Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACH 179
++ S+ V C D C E++S EKY+H + H
Sbjct: 83 ILNSLMVKCPAQD--CNEEVSL-EKYNHHVSSH 112
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 96 DCPVCYEPLNIPVYQCGNGHVVCHRCCC----DLMNKCP---SCRLPNGHSRSTAMEKVI 148
+CP+C L V Q GH C C D +KCP L N ++ I
Sbjct: 20 ECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78
Query: 149 ESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCP 186
S+ V C N GC KM DH C + CP
Sbjct: 79 LSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDCP 114
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 93 EVLDCPVCYEP-----LNIPVYQCGNGHVVCHRCCCDLMN------KCPSCRLPNGHSRS 141
EVL+CP+C E L + C GH +C +C L+ +CP C + +R
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFC---SKITRI 68
Query: 142 TAMEKVIESIQV 153
T++ ++ +++ V
Sbjct: 69 TSLTQLTDNLTV 80
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 95 LDCPVCYEPL---NIPVYQCGNGHVVC----HRCCCDLMNKCPSCRLP 135
++CP+C EPL +I + C G+ +C HR D CP+CR P
Sbjct: 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59
>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
Functional Aminotransferase Involved In Butirosin
Biosynthesis.
pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
Btrr, A Dual Functional Aminotransferase Involved In
Butirosin Biosynthesis
Length = 418
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 157 NADYGC---KEKMSYSEKYDHG--RACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAA 211
NAD C +EK++ Y H H P CP ++ S + ++RG+H +
Sbjct: 319 NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVS 378
Query: 212 EEFVYDKVLRITLSVHHDLIILQ 234
E + ++ +HH +++ +
Sbjct: 379 E-----RASGQSIVIHHAILLAE 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,443,385
Number of Sequences: 62578
Number of extensions: 379664
Number of successful extensions: 777
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 30
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)