Query 020290
Match_columns 328
No_of_seqs 333 out of 1581
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 7.5E-33 2.6E-37 245.5 6.9 177 147-325 1-192 (193)
2 3hcs_A TNF receptor-associated 99.8 1.3E-21 4.3E-26 169.5 5.0 120 91-216 15-142 (170)
3 3hct_A TNF receptor-associated 99.6 4E-16 1.4E-20 127.0 4.7 87 92-182 16-110 (118)
4 1rmd_A RAG1; V(D)J recombinati 99.6 8.3E-16 2.8E-20 124.6 2.8 85 93-181 22-115 (116)
5 3knv_A TNF receptor-associated 99.5 4E-16 1.4E-20 131.2 0.2 85 92-180 29-131 (141)
6 1wgm_A Ubiquitin conjugation f 99.0 2.2E-10 7.5E-15 90.2 3.3 62 90-153 18-87 (98)
7 1t1h_A Gspef-atpub14, armadill 98.9 1.7E-10 5.9E-15 86.3 1.6 60 91-152 5-72 (78)
8 3ztg_A E3 ubiquitin-protein li 98.9 2.8E-10 9.5E-15 87.9 2.1 63 92-156 11-84 (92)
9 2ecv_A Tripartite motif-contai 98.9 7.7E-10 2.6E-14 83.5 2.8 55 92-148 17-84 (85)
10 2kr4_A Ubiquitin conjugation f 98.9 6.6E-10 2.3E-14 85.1 2.2 60 91-152 11-77 (85)
11 2csy_A Zinc finger protein 183 98.8 1.9E-09 6.6E-14 81.2 3.7 43 93-137 14-60 (81)
12 2ysl_A Tripartite motif-contai 98.8 2.1E-09 7.1E-14 79.1 3.8 45 92-138 18-69 (73)
13 2egp_A Tripartite motif-contai 98.8 8.1E-10 2.8E-14 82.5 1.4 54 92-147 10-77 (79)
14 1bor_A Transcription factor PM 98.8 1.9E-09 6.5E-14 75.8 3.1 45 92-138 4-49 (56)
15 2kre_A Ubiquitin conjugation f 98.8 1.1E-09 3.8E-14 86.4 1.7 60 91-152 26-92 (100)
16 2ecw_A Tripartite motif-contai 98.8 9.6E-10 3.3E-14 82.9 1.3 55 92-148 17-84 (85)
17 3fl2_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 88.6 1.2 57 93-151 51-116 (124)
18 2y43_A E3 ubiquitin-protein li 98.7 1.6E-09 5.5E-14 84.8 0.4 58 93-152 21-86 (99)
19 4ayc_A E3 ubiquitin-protein li 98.7 2.1E-09 7.1E-14 89.5 0.8 43 94-138 53-99 (138)
20 2d8t_A Dactylidin, ring finger 98.7 7.6E-09 2.6E-13 76.0 3.2 43 93-137 14-60 (71)
21 1z6u_A NP95-like ring finger p 98.7 3.2E-09 1.1E-13 89.8 1.1 58 93-152 77-143 (150)
22 2djb_A Polycomb group ring fin 98.7 1E-08 3.5E-13 75.5 3.5 44 93-138 14-62 (72)
23 3lrq_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 83.7 0.5 55 93-149 21-84 (100)
24 2ecy_A TNF receptor-associated 98.7 6.8E-09 2.3E-13 75.1 2.2 45 92-138 13-62 (66)
25 1jm7_B BARD1, BRCA1-associated 98.7 7.2E-09 2.5E-13 83.7 2.5 57 93-151 21-83 (117)
26 2ckl_A Polycomb group ring fin 98.6 5.8E-09 2E-13 82.9 1.6 58 92-151 13-82 (108)
27 2c2l_A CHIP, carboxy terminus 98.6 8.9E-09 3E-13 94.3 2.9 60 91-152 205-272 (281)
28 2yur_A Retinoblastoma-binding 98.6 9.4E-09 3.2E-13 76.2 2.4 44 92-137 13-63 (74)
29 2ysj_A Tripartite motif-contai 98.6 1E-08 3.6E-13 73.3 2.3 39 92-132 18-63 (63)
30 2yu4_A E3 SUMO-protein ligase 98.6 8.9E-09 3E-13 80.1 1.2 59 92-152 5-80 (94)
31 3ng2_A RNF4, snurf, ring finge 98.6 1.3E-08 4.5E-13 74.2 1.2 45 92-138 8-63 (71)
32 2ea6_A Ring finger protein 4; 98.5 2E-08 6.7E-13 72.7 2.0 44 92-137 13-67 (69)
33 1jm7_A BRCA1, breast cancer ty 98.5 1E-08 3.4E-13 81.7 0.3 55 94-150 21-85 (112)
34 3l11_A E3 ubiquitin-protein li 98.5 1.5E-08 5E-13 81.4 1.2 43 93-137 14-61 (115)
35 1e4u_A Transcriptional repress 98.5 2.1E-08 7.3E-13 75.4 1.5 47 92-138 9-62 (78)
36 2ecg_A Baculoviral IAP repeat- 98.5 6.8E-09 2.3E-13 77.3 -1.4 43 93-138 24-68 (75)
37 2f42_A STIP1 homology and U-bo 98.5 2.5E-08 8.6E-13 86.6 1.9 60 91-152 103-170 (179)
38 2ckl_B Ubiquitin ligase protei 98.5 2.2E-08 7.4E-13 85.6 1.4 59 93-153 53-121 (165)
39 1g25_A CDK-activating kinase a 98.5 2.2E-08 7.4E-13 72.1 0.8 44 93-138 2-55 (65)
40 2xeu_A Ring finger protein 4; 98.5 2.8E-08 9.5E-13 70.8 0.7 43 94-138 3-56 (64)
41 2ct2_A Tripartite motif protei 98.5 3.7E-08 1.3E-12 74.8 1.3 44 92-137 13-67 (88)
42 4ic3_A E3 ubiquitin-protein li 98.4 3.9E-08 1.3E-12 73.0 0.5 43 93-138 23-67 (74)
43 2ect_A Ring finger protein 126 98.4 2.1E-07 7.3E-12 69.2 4.5 44 93-138 14-64 (78)
44 2ecm_A Ring finger and CHY zin 98.4 1.4E-07 4.6E-12 65.3 2.5 43 93-137 4-54 (55)
45 2ecj_A Tripartite motif-contai 98.4 9E-08 3.1E-12 66.9 1.6 38 93-132 14-58 (58)
46 1chc_A Equine herpes virus-1 r 98.3 1.7E-07 6E-12 67.7 2.8 42 94-137 5-51 (68)
47 1iym_A EL5; ring-H2 finger, ub 98.3 2.5E-07 8.4E-12 64.0 2.5 42 94-137 5-54 (55)
48 1x4j_A Ring finger protein 38; 98.3 2.8E-07 9.6E-12 68.1 2.8 43 93-137 22-71 (75)
49 2ecn_A Ring finger protein 141 98.3 1E-07 3.4E-12 69.5 -0.3 43 93-138 14-60 (70)
50 2ea5_A Cell growth regulator w 98.3 5.5E-07 1.9E-11 65.8 3.6 43 93-138 14-58 (68)
51 4ap4_A E3 ubiquitin ligase RNF 98.2 2.2E-07 7.7E-12 75.5 0.8 44 93-138 6-60 (133)
52 2ep4_A Ring finger protein 24; 98.2 6.5E-07 2.2E-11 65.8 3.2 44 93-138 14-64 (74)
53 2kiz_A E3 ubiquitin-protein li 98.2 3.6E-07 1.2E-11 66.3 1.7 43 94-138 14-63 (69)
54 2l0b_A E3 ubiquitin-protein li 98.1 5.5E-07 1.9E-11 69.3 1.4 43 93-137 39-88 (91)
55 3htk_C E3 SUMO-protein ligase 98.1 3E-07 1E-11 83.9 -0.3 58 92-151 179-248 (267)
56 2yho_A E3 ubiquitin-protein li 98.1 5E-07 1.7E-11 67.9 0.4 41 94-137 18-60 (79)
57 1v87_A Deltex protein 2; ring- 98.1 9.7E-07 3.3E-11 70.4 1.8 44 93-138 24-94 (114)
58 2vje_A E3 ubiquitin-protein li 98.0 1.9E-06 6.4E-11 62.0 1.2 43 93-137 7-56 (64)
59 3t6p_A Baculoviral IAP repeat- 97.9 3.5E-06 1.2E-10 80.3 3.0 43 93-138 294-338 (345)
60 2ecl_A Ring-box protein 2; RNF 97.9 3.6E-06 1.2E-10 63.3 1.9 45 91-137 12-75 (81)
61 4ap4_A E3 ubiquitin ligase RNF 97.9 4.2E-06 1.4E-10 67.8 2.5 46 91-138 69-125 (133)
62 2y1n_A E3 ubiquitin-protein li 97.8 5.2E-06 1.8E-10 80.1 1.9 43 94-138 332-379 (389)
63 4a0k_B E3 ubiquitin-protein li 97.8 2.7E-06 9.2E-11 68.8 -0.4 45 91-137 45-111 (117)
64 2vje_B MDM4 protein; proto-onc 97.8 5.2E-06 1.8E-10 59.5 1.1 42 94-137 7-55 (63)
65 2yuc_A TNF receptor-associated 97.7 2.8E-05 9.6E-10 57.4 3.4 51 151-206 15-66 (76)
66 2yre_A F-box only protein 30; 97.6 1.4E-05 4.9E-10 62.2 1.7 51 152-205 37-89 (100)
67 1wim_A KIAA0161 protein; ring 97.5 1.8E-05 6.2E-10 60.9 1.1 41 93-135 4-61 (94)
68 2yre_A F-box only protein 30; 97.5 2.3E-05 7.8E-10 61.1 1.3 40 147-186 59-98 (100)
69 2bay_A PRE-mRNA splicing facto 97.5 2.2E-05 7.5E-10 56.0 0.8 41 95-137 4-49 (61)
70 2yuc_A TNF receptor-associated 97.5 2.7E-05 9.3E-10 57.5 1.2 47 169-216 3-49 (76)
71 3dpl_R Ring-box protein 1; ubi 97.4 4.3E-05 1.5E-09 60.6 1.5 45 91-137 34-100 (106)
72 3vk6_A E3 ubiquitin-protein li 97.1 0.00024 8.2E-09 55.3 2.5 41 96-138 3-49 (101)
73 3hcs_A TNF receptor-associated 97.0 0.00014 4.7E-09 62.0 0.5 51 150-206 108-159 (170)
74 2d9k_A FLN29 gene product; zin 96.9 0.00021 7.2E-09 52.5 0.6 53 151-209 16-68 (75)
75 2d8s_A Cellular modulator of i 95.6 0.0047 1.6E-07 46.1 2.0 44 94-137 15-69 (80)
76 2ct0_A Non-SMC element 1 homol 95.5 0.012 4.1E-07 43.3 4.1 43 94-137 15-63 (74)
77 3k1l_B Fancl; UBC, ring, RWD, 94.1 0.012 4.2E-07 55.6 0.8 44 94-137 308-372 (381)
78 3hct_A TNF receptor-associated 93.8 0.022 7.5E-07 45.2 1.7 63 144-210 45-110 (118)
79 2cs3_A Protein C14ORF4, MY039 92.9 0.062 2.1E-06 39.8 2.8 32 93-124 14-48 (93)
80 2rpc_A Zinc finger protein ZIC 91.2 0.39 1.3E-05 38.7 6.1 112 93-209 24-148 (155)
81 1rmd_A RAG1; V(D)J recombinati 90.6 0.084 2.9E-06 41.4 1.5 76 127-206 24-112 (116)
82 2eod_A TNF receptor-associated 89.2 0.15 5.2E-06 35.2 1.7 52 152-208 10-62 (66)
83 2jun_A Midline-1; B-BOX, TRIM, 89.1 0.11 3.8E-06 39.7 1.0 30 93-124 2-35 (101)
84 2d9k_A FLN29 gene product; zin 88.3 0.12 4.2E-06 37.3 0.7 41 169-212 3-44 (75)
85 1vyx_A ORF K3, K3RING; zinc-bi 85.2 0.35 1.2E-05 33.7 1.6 46 92-137 4-58 (60)
86 2yt9_A Zinc finger-containing 84.4 0.54 1.9E-05 34.3 2.6 47 162-210 41-92 (95)
87 2jne_A Hypothetical protein YF 83.4 0.42 1.5E-05 36.7 1.5 38 95-137 33-72 (101)
88 2cup_A Skeletal muscle LIM-pro 80.4 0.63 2.1E-05 35.2 1.6 45 93-137 32-77 (101)
89 1ubd_C Protein (YY1 zinc finge 79.8 0.47 1.6E-05 36.5 0.7 110 92-208 3-119 (124)
90 2ct7_A Ring finger protein 31; 79.8 2 7E-05 31.9 4.2 35 91-125 22-61 (86)
91 1wfp_A Zinc finger (AN1-like) 79.7 4.6 0.00016 29.4 5.8 43 94-136 25-67 (74)
92 2dmd_A Zinc finger protein 64, 78.3 1.1 3.8E-05 32.6 2.4 46 162-209 42-90 (96)
93 2dlq_A GLI-kruppel family memb 78.0 1.2 4E-05 34.0 2.5 107 94-210 7-121 (124)
94 1z2q_A LM5-1; membrane protein 76.4 2.3 7.9E-05 31.5 3.6 37 88-124 15-54 (84)
95 2ee8_A Protein ODD-skipped-rel 76.2 2.6 8.9E-05 31.2 4.0 27 181-209 72-99 (106)
96 3knv_A TNF receptor-associated 75.1 0.59 2E-05 38.2 -0.0 27 181-207 103-130 (141)
97 1wg2_A Zinc finger (AN1-like) 74.6 6.3 0.00021 27.8 5.2 42 95-136 16-57 (64)
98 1wjp_A Zinc finger protein 295 74.3 1 3.4E-05 33.9 1.1 27 181-209 68-95 (107)
99 2jrp_A Putative cytoplasmic pr 72.8 1.7 6E-05 32.2 2.1 38 95-137 3-42 (81)
100 1x4u_A Zinc finger, FYVE domai 71.4 3.8 0.00013 30.2 3.7 35 90-124 10-47 (84)
101 2xqn_T Testin, TESS; metal-bin 71.2 1.2 4.1E-05 35.1 1.0 46 92-137 28-74 (126)
102 2dmi_A Teashirt homolog 3; zin 70.7 2.6 8.9E-05 31.8 2.8 27 181-209 79-106 (115)
103 3m62_A Ubiquitin conjugation f 67.5 2 6.9E-05 45.7 2.0 62 90-152 887-955 (968)
104 2yw8_A RUN and FYVE domain-con 67.1 3.7 0.00013 30.2 2.8 36 89-124 14-52 (82)
105 2gli_A Protein (five-finger GL 66.2 4.8 0.00016 31.8 3.6 27 181-207 127-154 (155)
106 1iml_A CRIP, cysteine rich int 65.4 3 0.0001 29.6 2.0 44 93-136 26-71 (76)
107 1joc_A EEA1, early endosomal a 65.4 2.7 9.1E-05 33.7 1.9 35 91-125 66-103 (125)
108 2gli_A Protein (five-finger GL 65.2 5.6 0.00019 31.4 3.9 58 150-209 65-125 (155)
109 2dlq_A GLI-kruppel family memb 64.9 5.2 0.00018 30.2 3.5 79 127-211 8-94 (124)
110 1z60_A TFIIH basal transcripti 63.8 2.7 9.3E-05 29.2 1.4 37 96-132 17-58 (59)
111 2jmo_A Parkin; IBR, E3 ligase, 63.7 9.8 0.00033 27.7 4.6 41 92-134 23-75 (80)
112 2ko5_A Ring finger protein Z; 63.5 3.7 0.00012 31.3 2.2 42 94-137 28-72 (99)
113 2kmk_A Zinc finger protein GFI 62.3 2.7 9.1E-05 29.3 1.2 73 128-206 3-80 (82)
114 2eod_A TNF receptor-associated 61.4 3 0.0001 28.2 1.3 34 175-211 3-36 (66)
115 1x61_A Thyroid receptor intera 61.0 2.3 7.7E-05 29.9 0.6 40 93-132 32-71 (72)
116 2j7j_A Transcription factor II 60.6 3.3 0.00011 29.0 1.4 76 128-207 3-85 (85)
117 2jtn_A LIM domain-binding prot 60.5 3 0.0001 35.2 1.4 44 93-137 86-130 (182)
118 3i2d_A E3 SUMO-protein ligase 59.8 3 0.0001 39.6 1.4 54 95-150 250-315 (371)
119 3nw0_A Non-structural maintena 59.2 3.5 0.00012 36.7 1.7 43 94-137 180-228 (238)
120 1x68_A FHL5 protein; four-and- 58.8 5.5 0.00019 28.2 2.4 39 93-131 34-73 (76)
121 1m3v_A FLIN4, fusion of the LI 57.7 3.4 0.00011 32.5 1.2 46 93-138 31-81 (122)
122 2csh_A Zinc finger protein 297 56.3 3.9 0.00013 30.5 1.3 46 162-209 43-91 (110)
123 3t7l_A Zinc finger FYVE domain 55.6 5.2 0.00018 30.0 1.9 34 91-124 17-53 (90)
124 4fo9_A E3 SUMO-protein ligase 54.1 4.5 0.00016 38.2 1.6 54 95-150 216-281 (360)
125 1wfh_A Zinc finger (AN1-like) 53.6 13 0.00046 26.1 3.6 42 95-136 16-57 (64)
126 1rut_X Flinc4, fusion protein 53.5 2.5 8.5E-05 35.9 -0.3 46 92-137 30-80 (188)
127 2rgt_A Fusion of LIM/homeobox 53.1 4.7 0.00016 33.4 1.4 45 92-137 31-76 (169)
128 2xjy_A Rhombotin-2; oncoprotei 52.5 3 0.0001 32.9 0.1 46 92-137 27-77 (131)
129 2ctd_A Zinc finger protein 512 52.4 7.7 0.00026 28.8 2.4 56 148-209 30-88 (96)
130 1wfl_A Zinc finger protein 216 50.3 43 0.0015 24.2 5.9 41 95-135 26-66 (74)
131 1vfy_A Phosphatidylinositol-3- 49.4 9.1 0.00031 27.3 2.2 29 96-124 13-44 (73)
132 2rpc_A Zinc finger protein ZIC 49.4 5.9 0.0002 31.4 1.4 50 162-211 68-120 (155)
133 1weu_A Inhibitor of growth fam 49.3 44 0.0015 25.0 6.2 44 91-135 33-85 (91)
134 1x3c_A Zinc finger protein 292 48.8 8.6 0.00029 27.9 2.0 29 181-209 26-55 (73)
135 1a7i_A QCRP2 (LIM1); LIM domai 48.6 5 0.00017 28.8 0.7 42 93-134 33-75 (81)
136 1y02_A CARP2, FYVE-ring finger 46.8 9 0.00031 30.4 2.0 41 93-133 18-64 (120)
137 2d8z_A Four and A half LIM dom 46.6 6.5 0.00022 27.2 1.1 33 93-125 30-62 (70)
138 1wfk_A Zinc finger, FYVE domai 46.5 11 0.00039 28.0 2.4 30 95-124 10-42 (88)
139 2jr6_A UPF0434 protein NMA0874 46.4 9.2 0.00032 27.2 1.8 31 91-124 5-35 (68)
140 2adr_A ADR1; transcription reg 46.3 12 0.0004 24.2 2.3 47 162-210 8-57 (60)
141 1a1h_A QGSR zinc finger peptid 46.1 8.4 0.00029 27.2 1.6 53 150-208 32-87 (90)
142 2drp_A Protein (tramtrack DNA- 45.1 9.2 0.00032 25.4 1.7 51 152-208 10-65 (66)
143 1dvp_A HRS, hepatocyte growth 44.6 9.9 0.00034 33.0 2.2 30 95-124 162-194 (220)
144 2ct1_A Transcriptional repress 44.2 11 0.00036 26.0 1.9 53 152-210 15-72 (77)
145 2vy4_A U11/U12 small nuclear r 44.0 6.2 0.00021 24.6 0.5 26 152-180 5-30 (37)
146 2i13_A AART; DNA binding, zinc 44.0 7.6 0.00026 32.0 1.3 76 128-209 79-159 (190)
147 1llm_C Chimera of ZIF23-GCN4; 43.8 0.79 2.7E-05 33.2 -4.4 76 128-209 5-84 (88)
148 2fiy_A Protein FDHE homolog; F 42.9 12 0.00042 34.5 2.6 42 94-135 182-231 (309)
149 1x4l_A Skeletal muscle LIM-pro 42.2 7.8 0.00027 27.0 0.9 34 92-125 33-66 (72)
150 2lt7_A Transcriptional regulat 42.1 6 0.00021 31.4 0.3 27 181-209 77-104 (133)
151 1weo_A Cellulose synthase, cat 41.0 14 0.00049 27.7 2.2 44 94-137 16-69 (93)
152 3uk3_C Zinc finger protein 217 41.0 8.7 0.0003 24.6 1.0 26 181-208 31-57 (57)
153 2cu8_A Cysteine-rich protein 2 40.4 10 0.00035 26.7 1.3 33 93-125 35-68 (76)
154 1wff_A Riken cDNA 2810002D23 p 40.4 78 0.0027 23.5 6.1 42 94-135 25-67 (85)
155 2dar_A PDZ and LIM domain prot 40.3 9.8 0.00033 27.9 1.2 30 95-124 52-81 (90)
156 1x5w_A Zinc finger protein 64, 39.8 13 0.00046 24.9 1.8 52 153-210 10-64 (70)
157 2i13_A AART; DNA binding, zinc 39.8 10 0.00035 31.1 1.4 108 94-211 21-133 (190)
158 1b8t_A Protein (CRP1); LIM dom 39.5 11 0.00039 31.7 1.7 44 93-136 141-185 (192)
159 2epa_A Krueppel-like factor 10 39.5 15 0.0005 24.8 2.0 51 152-204 17-70 (72)
160 2ehe_A Four and A half LIM dom 39.2 15 0.0005 26.2 2.0 33 93-125 42-74 (82)
161 2ebt_A Krueppel-like factor 5; 38.6 18 0.00062 25.9 2.5 44 161-206 52-98 (100)
162 3vhs_A ATPase wrnip1; zinc fin 38.1 10 0.00034 21.7 0.7 16 162-177 12-27 (29)
163 2jny_A Uncharacterized BCR; st 38.1 15 0.00051 26.1 1.8 30 91-123 7-36 (67)
164 3zyq_A Hepatocyte growth facto 37.9 14 0.0005 32.2 2.2 29 96-124 166-197 (226)
165 2cr8_A MDM4 protein; ZF-ranbp 37.6 26 0.00089 23.5 2.8 25 93-124 10-34 (53)
166 3mjh_B Early endosome antigen 36.9 12 0.00039 23.0 0.9 14 94-107 5-18 (34)
167 1x4k_A Skeletal muscle LIM-pro 36.5 8.7 0.0003 26.6 0.4 33 93-125 32-64 (72)
168 1wyh_A SLIM 2, skeletal muscle 36.1 9.8 0.00033 26.3 0.6 33 93-125 32-64 (72)
169 2cur_A Skeletal muscle LIM-pro 36.0 10 0.00035 26.1 0.7 33 93-125 30-62 (69)
170 2d9h_A Zinc finger protein 692 35.8 13 0.00044 25.6 1.2 47 162-210 13-65 (78)
171 1x6e_A Zinc finger protein 24; 35.3 15 0.00051 24.9 1.5 52 152-209 14-68 (72)
172 1nyp_A Pinch protein; LIM doma 34.8 9.2 0.00032 26.1 0.3 31 94-124 31-61 (66)
173 2d8x_A Protein pinch; LIM doma 34.7 9.2 0.00031 26.4 0.2 34 92-125 29-62 (70)
174 2gqj_A Zinc finger protein KIA 34.5 8 0.00028 28.4 -0.1 55 151-211 23-82 (98)
175 2js4_A UPF0434 protein BB2007; 34.4 17 0.0006 25.9 1.7 30 91-123 5-34 (70)
176 2l7x_A Envelope glycoprotein; 34.0 15 0.00052 26.3 1.3 35 168-206 18-52 (77)
177 2eln_A Zinc finger protein 406 33.9 15 0.00051 22.5 1.1 25 181-205 8-33 (38)
178 2cuq_A Four and A half LIM dom 33.8 13 0.00044 26.4 0.9 24 114-137 2-26 (80)
179 2egq_A FHL1 protein; LIM domai 33.7 9.6 0.00033 26.8 0.2 29 95-123 47-75 (77)
180 1bbo_A Human enhancer-binding 33.5 22 0.00074 22.5 2.0 36 171-208 17-54 (57)
181 1tf6_A Protein (transcription 33.3 24 0.00082 28.8 2.7 113 93-211 11-134 (190)
182 1sp2_A SP1F2; zinc finger, tra 33.3 33 0.0011 18.5 2.6 24 182-205 2-26 (31)
183 1zfd_A SWI5; DNA binding motif 33.1 37 0.0013 18.3 2.8 26 181-206 2-28 (32)
184 2lv2_A Insulinoma-associated p 32.9 23 0.00077 25.8 2.2 51 153-209 29-82 (85)
185 2dlk_A Novel protein; ZF-C2H2 32.8 22 0.00075 24.2 2.1 48 161-208 14-65 (79)
186 2iyb_E Testin, TESS, TES; LIM 32.7 11 0.00038 25.7 0.4 33 92-124 30-63 (65)
187 1g47_A Pinch protein; LIM doma 32.1 12 0.00042 26.2 0.6 33 93-125 38-70 (77)
188 2hf1_A Tetraacyldisaccharide-1 31.5 18 0.00062 25.7 1.4 29 92-123 6-34 (68)
189 2cor_A Pinch protein; LIM doma 31.4 16 0.00055 26.0 1.2 32 93-125 40-71 (79)
190 2wbs_A Krueppel-like factor 4; 30.7 34 0.0012 23.7 2.9 50 152-205 35-87 (89)
191 2d8y_A Eplin protein; LIM doma 30.5 16 0.00056 26.7 1.1 37 94-130 42-79 (91)
192 1b8t_A Protein (CRP1); LIM dom 30.5 12 0.0004 31.6 0.3 44 92-135 32-76 (192)
193 1wig_A KIAA1808 protein; LIM d 29.6 17 0.00056 25.5 0.9 34 92-125 29-63 (73)
194 1ncs_A Peptide M30F, transcrip 29.6 24 0.00081 21.8 1.6 26 180-205 16-42 (47)
195 2c6a_A Ubiquitin-protein ligas 29.5 20 0.00067 23.5 1.1 25 93-124 12-36 (46)
196 2kpi_A Uncharacterized protein 29.5 25 0.00086 23.9 1.8 28 91-123 7-36 (56)
197 1x3h_A Leupaxin; paxillin fami 29.3 21 0.00071 25.2 1.4 33 93-125 40-72 (80)
198 2jvx_A NF-kappa-B essential mo 29.1 20 0.00068 21.0 1.0 13 94-106 3-15 (28)
199 2pk7_A Uncharacterized protein 29.0 19 0.00065 25.6 1.1 29 92-123 6-34 (69)
200 2cot_A Zinc finger protein 435 28.9 32 0.0011 23.4 2.4 46 162-209 24-72 (77)
201 2jp9_A Wilms tumor 1; DNA bind 28.9 21 0.00072 26.4 1.5 73 128-204 38-117 (119)
202 2co8_A NEDD9 interacting prote 28.8 24 0.00083 25.2 1.7 32 94-125 42-75 (82)
203 2dlo_A Thyroid receptor-intera 28.8 17 0.00059 25.8 0.9 24 114-137 3-26 (81)
204 2vrw_B P95VAV, VAV1, proto-onc 28.7 40 0.0014 31.6 3.7 41 90-131 353-397 (406)
205 3mpx_A FYVE, rhogef and PH dom 28.6 12 0.00041 35.5 0.0 38 87-124 368-408 (434)
206 1lpv_A Doublesex protein; tran 28.3 17 0.00057 24.5 0.7 28 165-194 16-43 (52)
207 3lqh_A Histone-lysine N-methyl 27.4 43 0.0015 28.4 3.3 42 96-137 4-65 (183)
208 1wjv_A Cell growth regulating 26.8 18 0.00061 26.6 0.6 46 152-203 10-56 (79)
209 2wbt_A B-129; zinc finger; 2.7 26.0 40 0.0014 25.4 2.7 54 150-210 72-127 (129)
210 1tf6_A Protein (transcription 25.6 37 0.0013 27.6 2.5 13 94-106 42-56 (190)
211 1x6a_A LIMK-2, LIM domain kina 25.1 28 0.00095 24.6 1.5 24 114-137 2-26 (81)
212 1j2o_A FLIN2, fusion of rhombo 25.0 23 0.00078 27.1 1.0 42 92-133 28-72 (114)
213 3f6q_B LIM and senescent cell 24.9 16 0.00055 25.0 0.1 28 95-122 40-67 (72)
214 1x4w_A Hypothetical protein FL 23.6 46 0.0016 23.6 2.3 42 95-136 16-60 (67)
215 2zet_C Melanophilin; complex, 23.0 39 0.0013 27.8 2.1 30 95-124 69-102 (153)
216 1x62_A C-terminal LIM domain p 22.2 15 0.0005 26.1 -0.6 30 95-124 42-71 (79)
217 3pwf_A Rubrerythrin; non heme 22.2 42 0.0014 28.0 2.2 13 93-105 137-149 (170)
218 1x64_A Alpha-actinin-2 associa 21.4 21 0.00073 25.9 0.2 30 95-124 52-81 (89)
219 2csz_A Synaptotagmin-like prot 21.2 98 0.0034 22.4 3.7 50 75-125 7-60 (76)
220 1x63_A Skeletal muscle LIM-pro 21.2 21 0.0007 25.3 0.1 31 95-125 44-74 (82)
221 1klr_A Zinc finger Y-chromosom 21.1 55 0.0019 16.8 2.0 25 182-208 2-27 (30)
222 1d4u_A Nucleotide excision rep 20.7 49 0.0017 25.8 2.2 32 93-124 4-35 (111)
223 2dj7_A Actin-binding LIM prote 20.5 35 0.0012 24.3 1.2 32 93-125 41-72 (80)
224 2lce_A B-cell lymphoma 6 prote 20.2 46 0.0016 22.3 1.8 45 162-208 23-70 (74)
225 1zbd_B Rabphilin-3A; G protein 20.2 46 0.0016 26.7 2.0 31 95-125 56-90 (134)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=99.97 E-value=7.5e-33 Score=245.47 Aligned_cols=177 Identities=22% Similarity=0.369 Sum_probs=103.2
Q ss_pred hhhceeeecccCCCCCCcccccchhhhcccccccCCCCCCCCC--CccccccchHhhhhhhccCCCceEEEeCcEEEEEE
Q 020290 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAA--CNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITL 224 (328)
Q Consensus 147 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~g--C~~~g~~~~L~~Hl~~~H~~~~~~f~y~~~~~l~l 224 (328)
++++++++|+|+.+||++.++|.++..||+.|.|+|+.||.++ |+|.|+.++|..|+...|+|..+. .......+..
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~-~g~~i~f~~~ 79 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL-QGEDIVFLAT 79 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE-ESSEEEEEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee-cCceEEEEec
Confidence 4678999999999999999999999999999999999999976 999999999999999999995432 1111111122
Q ss_pred ----ecCCCEEEEEEecCCcEEEEeccc--CCCcc---EEEEEccCCC-CCCCeeEEEEEeeCCceEEEeeeeccccccc
Q 020290 225 ----SVHHDLIILQEEKNGDLFILNNST--EPDGY---RISVNCIAPS-CKGGVVYSIVAKSGGAVYEFNSCTKSIQNWD 294 (328)
Q Consensus 225 ----~~~~~~~vl~~~~d~~lFll~~~~--~~~g~---~vsV~cIgp~-~a~~f~Y~l~~~~~g~~L~~~s~~~si~~~~ 294 (328)
+.+.+|++++.+ ++..|+|+... .+.|. +|+|+||||. ++.+|+|+|++.+++++|+|+++++++++..
T Consensus 80 ~~~l~~~~~~~~v~~~-~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~ 158 (193)
T 2a25_A 80 DINLPGAVDWVMMQSC-FGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI 158 (193)
T ss_dssp CCC----CEEEEEEEE-TTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCS
T ss_pred ccccccceeEEEEEEe-cCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcc
Confidence 223378877765 56777776543 34553 6899999994 5789999999999999999999999987522
Q ss_pred CCCCCCcceeEecCC---ccCCCCceEEEEEEec
Q 020290 295 ENNPPSVASLLVPSD---FFGSYGQLHLGVRIQH 325 (328)
Q Consensus 295 ~~~~~~~~fL~VP~~---l~~~~g~l~l~V~I~~ 325 (328)
....++.+||+||.. +|.++|+|+|+|+|++
T Consensus 159 ~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~ 192 (193)
T 2a25_A 159 ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISM 192 (193)
T ss_dssp HHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEE
T ss_pred cccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEe
Confidence 233577899999965 3677789999999986
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.3e-21 Score=169.45 Aligned_cols=120 Identities=25% Similarity=0.412 Sum_probs=106.9
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhceeeecccCCCCC
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQVACENADYGC 162 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~v~C~~~~~GC 162 (328)
..+.|.||||+++|.+|+. .| ||+||..|+.++ ...||.|+.++.. .++.++++++.++.|.|+| .||
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~GC 90 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGC 90 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--TTC
T ss_pred CCCCCCCCCCChhhcCcEECCC--CCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--CCC
Confidence 3457999999999999987 67 999999999986 2489999999864 4788999999999999998 599
Q ss_pred CcccccchhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCCCceEEEe
Q 020290 163 KEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVY 216 (328)
Q Consensus 163 ~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y 216 (328)
+|.+++.++..|++.|+|+++.|| +|++.+.+.+|..|+...+..+.....|
T Consensus 91 ~~~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~ 142 (170)
T 3hcs_A 91 LHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDN 142 (170)
T ss_dssp CCEEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTT
T ss_pred CceecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCC
Confidence 999999999999999999999998 7999999999999998887777666554
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.60 E-value=4e-16 Score=127.03 Aligned_cols=87 Identities=29% Similarity=0.551 Sum_probs=76.3
Q ss_pred CCeeeecccccccccccc-ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhhceeeecccCCCCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIESIQVACENADYGCK 163 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~~l~v~C~~~~~GC~ 163 (328)
.+.+.|+||++++..|+. .| ||+||..|+.++ . ..||.|+.++.. .++..+++++.++++.|+| .||+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~ 91 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCL 91 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCC
T ss_pred CCCCCCCcCChhhcCeEECCc--CChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCC
Confidence 456899999999999987 88 999999999986 2 489999999864 3678899999999999997 7999
Q ss_pred cccccchhhhcccccccCC
Q 020290 164 EKMSYSEKYDHGRACHYTP 182 (328)
Q Consensus 164 ~~~~~~~~~~He~~C~~~~ 182 (328)
|.+++.++..|+++|.+..
T Consensus 92 ~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 92 HKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp CEEEGGGSGGGTSSSCC--
T ss_pred CEEeeHHHHHHHHHchhhh
Confidence 9999999999999988753
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.56 E-value=8.3e-16 Score=124.58 Aligned_cols=85 Identities=27% Similarity=0.576 Sum_probs=75.1
Q ss_pred Ceeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC----CcchhhHHhhhceeeecccCCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH----SRSTAMEKVIESIQVACENADYGCK 163 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~----~r~~~le~~l~~l~v~C~~~~~GC~ 163 (328)
+.+.||||++++.+|+. .| ||+||..|+.++ ...||.|+.++.. ..+..+.+++..+.+.|+|. ||+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~ 97 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCN 97 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCC
T ss_pred CCCCCCCCCcHhcCcEEcCC--CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCc
Confidence 35899999999999987 88 999999999986 3579999999863 34667889999999999995 999
Q ss_pred cccccchhhhcccccccC
Q 020290 164 EKMSYSEKYDHGRACHYT 181 (328)
Q Consensus 164 ~~~~~~~~~~He~~C~~~ 181 (328)
|.+++.++..|+++|.+.
T Consensus 98 ~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 98 EEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp CEEEHHHHHHHHHTSCCC
T ss_pred chhhHhHHHHHHHHhhcc
Confidence 999999999999999874
No 5
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.55 E-value=4e-16 Score=131.22 Aligned_cols=85 Identities=26% Similarity=0.532 Sum_probs=73.7
Q ss_pred CCeeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC------------CcchhhHHhhhceeee
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH------------SRSTAMEKVIESIQVA 154 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~------------~r~~~le~~l~~l~v~ 154 (328)
.+.|.|+||+++|.+|+. .| ||+||..|+.++. ..||.|+.++.. .++..+++++.++.|.
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~ 106 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQC--GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAV 106 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEE
T ss_pred CcCcCCCCCChhhcCcEECCC--CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccccc
Confidence 457999999999999987 78 9999999999872 389999987521 2677889999999999
Q ss_pred cccCCCCCCcccccchhhh-ccccccc
Q 020290 155 CENADYGCKEKMSYSEKYD-HGRACHY 180 (328)
Q Consensus 155 C~~~~~GC~~~~~~~~~~~-He~~C~~ 180 (328)
|+| .||.|.+.+.+++. |+..|.-
T Consensus 107 Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 107 CPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp CCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred cCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence 999 69999999999998 9988764
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=2.2e-10 Score=90.19 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=52.5
Q ss_pred CCCCeeeecccccccccccc-ccccc-cEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhceee
Q 020290 90 NDPEVLDCPVCYEPLNIPVY-QCGNG-HVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQV 153 (328)
Q Consensus 90 ~~~~~l~CpiC~~~l~~Pv~-qC~~G-H~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~v 153 (328)
..++.|.||||+++|++||. .| | |+||..||.++ ...||.|++++.. .+|..|++++..+..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 35678999999999999998 88 9 99999999986 3589999998863 578888888887653
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.94 E-value=1.7e-10 Score=86.28 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=49.8
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
.++.+.||||+++|.+|+. .| ||+||..|+.++ ...||.|+.++.. .+|..|+++++.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 3567899999999999988 88 999999999986 2479999998853 46888888887654
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.92 E-value=2.8e-10 Score=87.86 Aligned_cols=63 Identities=19% Similarity=0.556 Sum_probs=51.6
Q ss_pred CCeeeecccccccccccc-c-cccccEeccccccccc-----CCCCCCCcCCC----CCcchhhHHhhhceeeecc
Q 020290 92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM-----NKCPSCRLPNG----HSRSTAMEKVIESIQVACE 156 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~-----~~CP~C~~~~~----~~r~~~le~~l~~l~v~C~ 156 (328)
.+.+.||||+++|.+|+. . | ||+||..|+.++. ..||.|+..+. ...|..++++++.+.....
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred CcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 456899999999999988 6 8 9999999998862 48999999873 3568888888887765443
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=7.7e-10 Score=83.48 Aligned_cols=55 Identities=29% Similarity=0.793 Sum_probs=43.8
Q ss_pred CCeeeecccccccccccc-ccccccEecccccccc---------cCCCCCCCcCCCC---CcchhhHHhh
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---------MNKCPSCRLPNGH---SRSTAMEKVI 148 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---------~~~CP~C~~~~~~---~r~~~le~~l 148 (328)
.+.+.|+||++.+..|+. .| ||.||..|+.++ ...||.|+..+.. .+|..+++++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred cCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 346899999999999987 88 999999999875 3589999998763 3455555443
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=6.6e-10 Score=85.07 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
.++.|.||||+++|++||. .| ||+||..|+.++ ...||.|+.++.. .+|..|++++..+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 4667999999999999998 88 999999999986 4689999998863 57888888887653
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.9e-09 Score=81.20 Aligned_cols=43 Identities=28% Similarity=0.787 Sum_probs=38.3
Q ss_pred Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+.+.|+||++.+..|+. .| ||+||..|+.+| ...||.|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45799999999999987 89 999999999987 368999999875
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.1e-09 Score=79.11 Aligned_cols=45 Identities=36% Similarity=0.874 Sum_probs=38.8
Q ss_pred CCeeeecccccccccccc-ccccccEeccccccccc------CCCCCCCcCCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSCRLPNGH 138 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C~~~~~~ 138 (328)
.+.+.|+||++.+..|+. .| ||.||..|+.+|. ..||.|+..+..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456899999999999987 88 9999999999873 279999998753
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.81 E-value=8.1e-10 Score=82.53 Aligned_cols=54 Identities=28% Similarity=0.781 Sum_probs=42.9
Q ss_pred CCeeeecccccccccccc-ccccccEecccccccc----------cCCCCCCCcCCCC---CcchhhHHh
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----------MNKCPSCRLPNGH---SRSTAMEKV 147 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----------~~~CP~C~~~~~~---~r~~~le~~ 147 (328)
.+.+.|+||++.+..|+. .| ||.||..|+.++ ...||.|+..+.. .+|..++++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred ccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 346899999999999987 88 999999999975 2479999998863 345555444
No 14
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.9e-09 Score=75.83 Aligned_cols=45 Identities=27% Similarity=0.595 Sum_probs=39.9
Q ss_pred CCeeeecccccccccccc-ccccccEecccccccccCCCCCCCcCCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLMNKCPSCRLPNGH 138 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~~~CP~C~~~~~~ 138 (328)
.+.+.|+||++.+..|+. .| ||+||..|+.++...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEeec
Confidence 456889999999999987 99 9999999998877799999998753
No 15
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=1.1e-09 Score=86.45 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
.++.|.||||+++|++||. .| ||+||..|+.++ ...||.|+.++.. .+|..|++++..+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 4678999999999999998 89 999999999986 3689999998863 57888888887654
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.80 E-value=9.6e-10 Score=82.94 Aligned_cols=55 Identities=31% Similarity=0.778 Sum_probs=43.4
Q ss_pred CCeeeecccccccccccc-ccccccEecccccccc---------cCCCCCCCcCCCC---CcchhhHHhh
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---------MNKCPSCRLPNGH---SRSTAMEKVI 148 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---------~~~CP~C~~~~~~---~r~~~le~~l 148 (328)
.+.+.|+||++.+..|+. .| ||.||..|+.++ ...||.|+..+.. .+|..+++++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred ccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 346899999999999987 88 999999999875 3479999998763 3455555443
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.76 E-value=1.4e-09 Score=88.65 Aligned_cols=57 Identities=28% Similarity=0.682 Sum_probs=47.7
Q ss_pred Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC----CcchhhHHhhhce
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH----SRSTAMEKVIESI 151 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~----~r~~~le~~l~~l 151 (328)
+.+.||||++++.+|+. .| ||+||..|+..+. ..||.|+.++.. .+|..+.+++..+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred cCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 45899999999999987 89 9999999998862 389999998854 4677888877654
No 18
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.72 E-value=1.6e-09 Score=84.78 Aligned_cols=58 Identities=26% Similarity=0.774 Sum_probs=48.5
Q ss_pred Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
+.+.|+||++.+.+|+. .| ||.||..|+.++ ...||.|+..+.. .+|..++++++.++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCC--CCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 45899999999999975 68 999999999986 3589999998863 46888888887664
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.71 E-value=2.1e-09 Score=89.48 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=38.3
Q ss_pred eeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
.+.|+||++.+.+|+. .| ||.||..|+.+| ...||.||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4789999999999987 89 999999999987 3689999998864
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=7.6e-09 Score=75.96 Aligned_cols=43 Identities=30% Similarity=0.689 Sum_probs=37.8
Q ss_pred Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+.+.|+||++.+..|+. .| ||.||..|+.+| ...||.|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 45789999999999987 89 999999999986 368999998875
No 21
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.68 E-value=3.2e-09 Score=89.83 Aligned_cols=58 Identities=26% Similarity=0.592 Sum_probs=48.7
Q ss_pred Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC----CcchhhHHhhhcee
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH----SRSTAMEKVIESIQ 152 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~----~r~~~le~~l~~l~ 152 (328)
+.+.|+||++++.+|+. .| ||+||..|+.++. ..||.|+.++.. .+|..+++++..+.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred cCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 45899999999999987 89 9999999999862 379999998864 46888888887654
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1e-08 Score=75.50 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=38.6
Q ss_pred Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+.+|+. .| ||.||..|+.+| ...||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 46899999999999976 78 999999999986 4689999998764
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.67 E-value=3e-09 Score=83.65 Aligned_cols=55 Identities=29% Similarity=0.646 Sum_probs=43.4
Q ss_pred Ceeeecccccccccccc--ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhh
Q 020290 93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIE 149 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~ 149 (328)
+.+.|+||++++..|+. .| ||+||..|+.+| . ..||.||.++.. .+++.++.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHC--SKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred CCCCCccCCccccCccccCCC--CChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 46899999999999976 78 999999999987 3 589999998853 34555544433
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=6.8e-09 Score=75.06 Aligned_cols=45 Identities=29% Similarity=0.688 Sum_probs=39.0
Q ss_pred CCeeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH 138 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~ 138 (328)
.+.+.|+||++.+..|+. .| ||+||..|+.++. ..||.|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456899999999999987 88 9999999999862 579999998753
No 25
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=7.2e-09 Score=83.68 Aligned_cols=57 Identities=28% Similarity=0.698 Sum_probs=47.0
Q ss_pred Ceeeecccccccccccc--ccccccEeccccccccc-CCCCCCCcCCCC---CcchhhHHhhhce
Q 020290 93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDLM-NKCPSCRLPNGH---SRSTAMEKVIESI 151 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~~-~~CP~C~~~~~~---~r~~~le~~l~~l 151 (328)
+.+.||||++++..|+. .| ||+||..|+..+. ..||.|+.++.. .+|..+.+++..+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~C--gH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGC--EHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSS--SCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCC--CCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence 46899999999999986 58 9999999999874 589999998752 4577777777654
No 26
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.65 E-value=5.8e-09 Score=82.92 Aligned_cols=58 Identities=17% Similarity=0.455 Sum_probs=47.0
Q ss_pred CCeeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC-------CcchhhHHhhhce
Q 020290 92 PEVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH-------SRSTAMEKVIESI 151 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~-------~r~~~le~~l~~l 151 (328)
.+.+.|+||++++.+|+. .| ||+||..|+.++ ...||.|+..+.. ..|..+.+++..+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIEC--LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred CCcCCCccCChHHhCcCEeCCC--CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 346899999999999986 78 999999999987 3689999998763 2466777777654
No 27
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=8.9e-09 Score=94.31 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=50.9
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
.++.|.||||+++|.+||. .| ||+||..|+.++ ...||.|+.++.. .+|..|++++..+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 5677999999999999998 89 999999999986 2349999999863 57888988887664
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.63 E-value=9.4e-09 Score=76.19 Aligned_cols=44 Identities=27% Similarity=0.771 Sum_probs=38.0
Q ss_pred CCeeeecccccccccccc-c-cccccEeccccccccc-----CCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM-----NKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~-----~~CP~C~~~~~ 137 (328)
.+.+.|+||++++.+|+. . | ||+||..|+.+|. ..||.|++++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456899999999999987 6 9 9999999999872 48999998753
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1e-08 Score=73.31 Aligned_cols=39 Identities=41% Similarity=1.015 Sum_probs=33.8
Q ss_pred CCeeeecccccccccccc-ccccccEeccccccccc------CCCCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSC 132 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C 132 (328)
.+.+.|+||++.+.+|+. .| ||+||..|+.+|. ..||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356899999999999987 88 9999999999862 379987
No 30
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=8.9e-09 Score=80.14 Aligned_cols=59 Identities=24% Similarity=0.535 Sum_probs=48.0
Q ss_pred CCeeeecccccccccccc-c-cccccEeccccccccc---------CCCCC--CCcC-CC---CCcchhhHHhhhcee
Q 020290 92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM---------NKCPS--CRLP-NG---HSRSTAMEKVIESIQ 152 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~---------~~CP~--C~~~-~~---~~r~~~le~~l~~l~ 152 (328)
.+.|.||||+++|.+||. . | ||+||..||.++. ..||. |+.. +. ..+|..|++++..+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~c--Gh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVC--GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSS--CCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCC--CCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 356899999999999998 4 8 9999999999862 28999 8765 53 357888888887764
No 31
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.55 E-value=1.3e-08 Score=74.24 Aligned_cols=45 Identities=38% Similarity=0.940 Sum_probs=38.2
Q ss_pred CCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 92 PEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
.+.+.|+||++.+..| +. .| ||.||..|+.+| ...||.||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3468899999999987 54 78 999999999987 4689999998763
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2e-08 Score=72.74 Aligned_cols=44 Identities=36% Similarity=0.916 Sum_probs=37.5
Q ss_pred CCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
.+.+.|+||++.+..| +. .| ||.||..|+.+| ...||.|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3467899999999887 54 79 999999999987 368999998875
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1e-08 Score=81.67 Aligned_cols=55 Identities=33% Similarity=0.882 Sum_probs=42.8
Q ss_pred eeeecccccccccccc-ccccccEeccccccccc------CCCCCCCcCCCC---CcchhhHHhhhc
Q 020290 94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSCRLPNGH---SRSTAMEKVIES 150 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C~~~~~~---~r~~~le~~l~~ 150 (328)
.+.|+||++.+..|+. .| ||.||..|+.++. ..||.|+.++.. .++..++++++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEE 85 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHH
T ss_pred CCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHH
Confidence 5789999999999987 88 9999999999862 279999998763 344444444443
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=81.42 Aligned_cols=43 Identities=33% Similarity=0.719 Sum_probs=38.1
Q ss_pred Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~ 137 (328)
+.+.|+||++.+..|+. .| ||+||..|+.++. ..||.|+..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 46899999999999987 89 9999999999862 47999999875
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.52 E-value=2.1e-08 Score=75.44 Aligned_cols=47 Identities=32% Similarity=0.851 Sum_probs=36.8
Q ss_pred CCeeeecccccccc--cccc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290 92 PEVLDCPVCYEPLN--IPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH 138 (328)
Q Consensus 92 ~~~l~CpiC~~~l~--~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~ 138 (328)
.+.+.||||++++. ++.+ .|++||.||..|+.++ ...||.||+++..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 45689999999985 4455 5444999999999886 2589999998763
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6.8e-09 Score=77.26 Aligned_cols=43 Identities=30% Similarity=0.756 Sum_probs=38.3
Q ss_pred Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+.+|++ .| ||. ||..|+.++ ..||.||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence 35789999999999998 99 999 999999876 689999998764
No 37
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=2.5e-08 Score=86.62 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCCeeeecccccccccccc-ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
.++.|.||||+++|.+||. .| ||+||..|+.++ . ..||.|+.++.. .+|..|.+++..+.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~--Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCC--CCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 4678999999999999998 88 999999999986 1 359999998863 57888888887664
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.50 E-value=2.2e-08 Score=85.58 Aligned_cols=59 Identities=25% Similarity=0.586 Sum_probs=48.0
Q ss_pred Ceeeecccccccccccc--ccccccEecccccccc----cCCCCCCCcCCCC----CcchhhHHhhhceee
Q 020290 93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH----SRSTAMEKVIESIQV 153 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~----~r~~~le~~l~~l~v 153 (328)
+.+.|+||++.+.+|+. .| ||+||..|+.+| ...||.|+.++.. ..|..+++++..+.-
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKEC--LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhhCcCEeCCC--CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 46899999999999976 67 999999999987 3569999998853 357778888877644
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=2.2e-08 Score=72.14 Aligned_cols=44 Identities=32% Similarity=0.793 Sum_probs=36.9
Q ss_pred Ceeeeccccc-cccccc----c-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYE-PLNIPV----Y-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~-~l~~Pv----~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~ 138 (328)
+.+.||||++ .+..|+ . .| ||+||..|+.++ ...||.|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 898883 3 79 999999999987 2579999998763
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.46 E-value=2.8e-08 Score=70.83 Aligned_cols=43 Identities=40% Similarity=0.999 Sum_probs=36.7
Q ss_pred eeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 94 VLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 94 ~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
.+.|+||++.+..| +. .| ||.||..|+.+| ...||.|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 47899999999887 44 78 999999999987 3689999998763
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=3.7e-08 Score=74.84 Aligned_cols=44 Identities=39% Similarity=0.991 Sum_probs=37.8
Q ss_pred CCeeeeccccccccc----ccc-ccccccEecccccccc---c---CCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNI----PVY-QCGNGHVVCHRCCCDL---M---NKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~----Pv~-qC~~GH~~C~~C~~~~---~---~~CP~C~~~~~ 137 (328)
.+.+.|+||++.+.. |+. .| ||.||..|+.+| . ..||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 346889999999998 876 89 999999999987 2 58999999865
No 42
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.41 E-value=3.9e-08 Score=73.02 Aligned_cols=43 Identities=30% Similarity=0.756 Sum_probs=38.6
Q ss_pred Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+.+|++ .| ||. ||..|+.++ ..||.||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence 35789999999999988 99 999 999999998 799999998753
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.41 E-value=2.1e-07 Score=69.17 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=36.1
Q ss_pred Ceeeeccccccccccc----cccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPV----YQCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv----~qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+..+. ..| ||.||..|+.+| ...||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPC--NHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTT--SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCC--CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3578999999997652 268 999999999987 3689999998763
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.37 E-value=1.4e-07 Score=65.30 Aligned_cols=43 Identities=28% Similarity=0.807 Sum_probs=35.1
Q ss_pred Ceeeeccccccccc----ccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNI----PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~----Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+...|+||++.+.. ++. .| ||.||..|+.+| ...||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34689999999865 444 89 999999999987 368999998763
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=9e-08 Score=66.89 Aligned_cols=38 Identities=39% Similarity=0.896 Sum_probs=33.1
Q ss_pred Ceeeecccccccccccc-ccccccEecccccccc------cCCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL------MNKCPSC 132 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~------~~~CP~C 132 (328)
+.+.|+||++.+.+|+. .| ||+||..|+.++ ...||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46889999999999987 89 999999999987 1478887
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.35 E-value=1.7e-07 Score=67.72 Aligned_cols=42 Identities=29% Similarity=0.711 Sum_probs=36.2
Q ss_pred eeeecccccccccc-cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIP-VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~P-v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
...|+||++.+.+| +. .| ||.||..|+.+| ...||.|+.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45799999999987 44 89 999999999986 478999999875
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.30 E-value=2.5e-07 Score=64.04 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=34.5
Q ss_pred eeeeccccccccc---ccc-c-cccccEecccccccc---cCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNI---PVY-Q-CGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~---Pv~-q-C~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
...|+||++.+.. ++. . | ||.||..|+.+| ...||.||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4689999999976 443 4 8 999999999987 368999998753
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.8e-07 Score=68.12 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=36.3
Q ss_pred Ceeeecccccccccc---cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIP---VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~P---v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+...|+||++.+..+ +. .| ||.||..|+.+| ...||.||..+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 457899999999876 33 78 999999999987 468999998875
No 49
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1e-07 Score=69.48 Aligned_cols=43 Identities=26% Similarity=0.706 Sum_probs=36.8
Q ss_pred Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+.+ +. .| ||.||..|+.+| ...||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~-~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC-cccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 45789999999988 55 89 999999999986 3689999988753
No 50
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=5.5e-07 Score=65.76 Aligned_cols=43 Identities=30% Similarity=0.633 Sum_probs=37.9
Q ss_pred Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~ 138 (328)
+...|+||++...++++ .| ||. +|..|...+ ..||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence 45689999999999988 99 999 999999876 689999998763
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.21 E-value=2.2e-07 Score=75.47 Aligned_cols=44 Identities=39% Similarity=0.958 Sum_probs=38.3
Q ss_pred Ceeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+..| +. .| ||+||..|+.+| ...||.|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 468999999999988 65 89 999999999987 3689999998763
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=6.5e-07 Score=65.83 Aligned_cols=44 Identities=25% Similarity=0.531 Sum_probs=36.2
Q ss_pred Ceeeecccccccccccc----ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY----QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~----qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+...|+||++.+..+.. .| ||.||..|+.+| ...||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C--~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPC--KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETT--TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCC--CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 35689999999986632 67 999999999987 3689999998754
No 53
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.21 E-value=3.6e-07 Score=66.26 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=34.7
Q ss_pred eeeeccccccccc---ccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 94 VLDCPVCYEPLNI---PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 94 ~l~CpiC~~~l~~---Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
...|+||++.+.. ++. .| ||.||..|+.+| ...||.||..+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPC--MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCC--CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4689999998853 333 78 999999999987 4689999988753
No 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.13 E-value=5.5e-07 Score=69.33 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=35.4
Q ss_pred Ceeeeccccccccc---ccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNI---PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~---Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+...|+||++.+.. ++. .| ||.||..|+.+| ...||.||..+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 35789999998875 443 78 999999999987 368999998764
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3e-07 Score=83.94 Aligned_cols=58 Identities=24% Similarity=0.500 Sum_probs=46.9
Q ss_pred CCeeeecccccccccccc--ccccccEeccccccccc-----CCCCC--CCcCCCC---CcchhhHHhhhce
Q 020290 92 PEVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDLM-----NKCPS--CRLPNGH---SRSTAMEKVIESI 151 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~~-----~~CP~--C~~~~~~---~r~~~le~~l~~l 151 (328)
...+.||||+++|++||. .| ||+||..|+..+. ..||. |++.+.. .+|..|.+++..+
T Consensus 179 ~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred ceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 446899999999999996 79 9999999999862 36999 9987653 4677777777653
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.09 E-value=5e-07 Score=67.94 Aligned_cols=41 Identities=34% Similarity=0.851 Sum_probs=37.2
Q ss_pred eeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~ 137 (328)
...|+||++.+.+|++ .| ||. ||..|..++ ..||.||.++.
T Consensus 18 ~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhh
Confidence 4689999999999998 89 999 999999987 58999999876
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.07 E-value=9.7e-07 Score=70.41 Aligned_cols=44 Identities=30% Similarity=0.702 Sum_probs=35.7
Q ss_pred Ceeeeccccccccccc------------------c-ccccccEeccccccccc--------CCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPV------------------Y-QCGNGHVVCHRCCCDLM--------NKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv------------------~-qC~~GH~~C~~C~~~~~--------~~CP~C~~~~~~ 138 (328)
....|+||++.|..|. . .| ||.||..|+.+|. ..||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999997653 3 68 9999999999862 479999988753
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.95 E-value=1.9e-06 Score=62.05 Aligned_cols=43 Identities=28% Similarity=0.695 Sum_probs=36.7
Q ss_pred Ceeeecccccccccccc---ccccccE-eccccccccc---CCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVY---QCGNGHV-VCHRCCCDLM---NKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~---qC~~GH~-~C~~C~~~~~---~~CP~C~~~~~ 137 (328)
+...|+||++...++++ .| ||. +|..|..++. ..||.||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999999999875 68 999 8999999873 57999999875
No 59
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=3.5e-06 Score=80.35 Aligned_cols=43 Identities=40% Similarity=0.832 Sum_probs=38.7
Q ss_pred Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~ 138 (328)
+.+.|+||++.+..|++ .| ||. ||..|+..+ ..||.||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence 35889999999999998 89 999 999999998 789999998753
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.6e-06 Score=63.30 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=35.4
Q ss_pred CCCeeeecccccccccc--------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 91 DPEVLDCPVCYEPLNIP--------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~P--------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+.+.-.|+||++.|..+ +. .| ||.|+..|+.+| ...||.||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGEC--NHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETT--SCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCC--CCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 44556799999998663 23 48 999999999987 368999998764
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.89 E-value=4.2e-06 Score=67.78 Aligned_cols=46 Identities=37% Similarity=0.920 Sum_probs=38.6
Q ss_pred CCCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290 91 DPEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH 138 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~ 138 (328)
+.+.+.|+||++.+..| +. .| ||.||..|+.+| ...||.||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETT--SBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCC--CChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 45678899999999886 44 68 999999999987 4789999988753
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.81 E-value=5.2e-06 Score=80.09 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=37.7
Q ss_pred eeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290 94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH 138 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~ 138 (328)
...|+||++.+..|+. .| ||.||..|+..| ...||.||.++..
T Consensus 332 ~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3789999999999987 99 999999999876 3689999998753
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.78 E-value=2.7e-06 Score=68.80 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=2.1
Q ss_pred CCCeeeecccccccccc-----------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 91 DPEVLDCPVCYEPLNIP-----------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~P-----------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+.+.-.|+||++.|..+ +. .| ||.|+..|+.+| ...||.||.++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C--~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCCC-----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCc--CceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 44556899999999763 22 57 999999999997 468999998764
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.78 E-value=5.2e-06 Score=59.50 Aligned_cols=42 Identities=24% Similarity=0.603 Sum_probs=35.6
Q ss_pred eeeecccccccccccc---ccccccE-eccccccccc---CCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIPVY---QCGNGHV-VCHRCCCDLM---NKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~---qC~~GH~-~C~~C~~~~~---~~CP~C~~~~~ 137 (328)
...|+||++-.+++++ .| ||. +|..|..++. ..||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3579999999988864 78 998 9999999873 48999999875
No 65
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.65 E-value=2.8e-05 Score=57.45 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=45.4
Q ss_pred eeeecccCCCCCCcccccchhhhccc-ccccCCCCCCCCCCccccccchHhhhhhhc
Q 020290 151 IQVACENADYGCKEKMSYSEKYDHGR-ACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206 (328)
Q Consensus 151 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~ 206 (328)
..|.|++ +|...+...++..|+. .|+++++.|++ |++.+.+.+|..|...+
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~~C 66 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEGMC 66 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTTSC
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHhHC
Confidence 4688886 8999999999999998 99999999987 99999999999998543
No 66
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.4e-05 Score=62.24 Aligned_cols=51 Identities=16% Similarity=0.385 Sum_probs=33.7
Q ss_pred eeecccCCCCCCcccccchhhhcccccccCCCCCCC--CCCccccccchHhhhhhh
Q 020290 152 QVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPL--AACNFVGSFHQIYQHFRG 205 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~--~gC~~~g~~~~L~~Hl~~ 205 (328)
.+.||| .|...+...+++.|...|+.+.+.|++ .||.+++.+.+|..|++.
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 566664 466666666666676667776666665 367766666677777664
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.54 E-value=1.8e-05 Score=60.95 Aligned_cols=41 Identities=22% Similarity=0.617 Sum_probs=32.5
Q ss_pred Ceeeecccccccccccc----ccccccEecccccccc-----------cCCCCC--CCcC
Q 020290 93 EVLDCPVCYEPLNIPVY----QCGNGHVVCHRCCCDL-----------MNKCPS--CRLP 135 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~----qC~~GH~~C~~C~~~~-----------~~~CP~--C~~~ 135 (328)
+.+.|+||++.+..|.. .| ||.||..|+... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999988864 48 999999999863 126888 8776
No 68
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=2.3e-05 Score=61.13 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=35.9
Q ss_pred hhhceeeecccCCCCCCcccccchhhhcccccccCCCCCC
Q 020290 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCP 186 (328)
Q Consensus 147 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP 186 (328)
+.-...++|+|+.|||+.++...++..|++.|+-..+.|.
T Consensus 59 ~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 59 LCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp HCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred hcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 3456789999999999999999999999999999988874
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.48 E-value=2.2e-05 Score=55.97 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=36.2
Q ss_pred eeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
|.|||+++++.+||. .+ ||+|+..|+.+| ...||..++++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~s--G~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKS--RTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTT--TEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCC--CcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 789999999999987 36 999999999997 357999998875
No 70
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.48 E-value=2.7e-05 Score=57.52 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=41.1
Q ss_pred chhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCCCceEEEe
Q 020290 169 SEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVY 216 (328)
Q Consensus 169 ~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y 216 (328)
.+++.|+..|+|+++.||+ +|+....+.+|..|+......+.+...|
T Consensus 3 ~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~ 49 (76)
T 2yuc_A 3 SGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEF 49 (76)
T ss_dssp CSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSS
T ss_pred hHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCC
Confidence 5678999999999999996 8999999999999999777777666555
No 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.39 E-value=4.3e-05 Score=60.58 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.1
Q ss_pred CCCeeeecccccccccc-----------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290 91 DPEVLDCPVCYEPLNIP-----------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~P-----------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
+.+.-.|+||++.|..+ +. .| ||.|+..|+.+| ...||.||..+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT--SCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeeccc--CcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 44556799999998865 22 57 999999999997 468999998764
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.06 E-value=0.00024 Score=55.27 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=33.2
Q ss_pred eecccccccccc--ccccccccEecccccccc----cCCCCCCCcCCCC
Q 020290 96 DCPVCYEPLNIP--VYQCGNGHVVCHRCCCDL----MNKCPSCRLPNGH 138 (328)
Q Consensus 96 ~CpiC~~~l~~P--v~qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~ 138 (328)
.|++|..+++.- +..| .|+||.+|...+ .+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 599999998764 2389 999999999765 2589999988764
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.97 E-value=0.00014 Score=61.96 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=45.0
Q ss_pred ceeeecccCCCCCCcccccchhhhcc-cccccCCCCCCCCCCccccccchHhhhhhhc
Q 020290 150 SIQVACENADYGCKEKMSYSEKYDHG-RACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206 (328)
Q Consensus 150 ~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~ 206 (328)
-..+.|+ ||.+.+...++..|+ ..|+++++.||+ |+......+|..|....
T Consensus 108 ~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~--C~~~~~~~~l~~H~~~~ 159 (170)
T 3hcs_A 108 FALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN--CAASMAFEDKEIHDQNC 159 (170)
T ss_dssp TSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT--TCCEEEGGGHHHHHTTC
T ss_pred ceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC--CCCccCHHHHHhHHHhC
Confidence 3467786 799999999999998 599999999985 99999999999998654
No 74
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.00021 Score=52.52 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=45.6
Q ss_pred eeeecccCCCCCCcccccchhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCC
Q 020290 151 IQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKH 209 (328)
Q Consensus 151 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~ 209 (328)
-.+.|++ |...+...++..|+..|+.+++.|+. |+....+.+|..|+..+...
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~c~~~ 68 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEVCGRE 68 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHHBTTB
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHHccCC
Confidence 3577775 99999999999999999999999986 99988899999999875443
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.58 E-value=0.0047 Score=46.13 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=33.7
Q ss_pred eeeecccccccc--cccc-cccc---ccEeccccccccc-----CCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLN--IPVY-QCGN---GHVVCHRCCCDLM-----NKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~--~Pv~-qC~~---GH~~C~~C~~~~~-----~~CP~C~~~~~ 137 (328)
...|.||++.+. .++. .|.+ +|.|-..|+.+|. ..||+|+..+.
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 457999998763 3544 7843 3999999999982 48999998875
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.012 Score=43.31 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.9
Q ss_pred eeeecccccccccccccc-ccccEecccccccc---c--CCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIPVYQC-GNGHVVCHRCCCDL---M--NKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC-~~GH~~C~~C~~~~---~--~~CP~C~~~~~ 137 (328)
+-.|.||+.++.+- ..| .++|.|=..|+.+| . ..||.|+..+.
T Consensus 15 i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 45799999999743 333 23999989999986 2 58999998765
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.06 E-value=0.012 Score=55.62 Aligned_cols=44 Identities=20% Similarity=0.500 Sum_probs=34.5
Q ss_pred eeeeccccccccc----cccccc---cccEeccccccccc--------------CCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNI----PVYQCG---NGHVVCHRCCCDLM--------------NKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~----Pv~qC~---~GH~~C~~C~~~~~--------------~~CP~C~~~~~ 137 (328)
.-.|+||+..+.+ |...|. +||.|=..|+.+|- +.||.|++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4579999999875 655553 49999999999871 36999998765
No 78
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.76 E-value=0.022 Score=45.19 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=41.1
Q ss_pred hHHhhhceeeecccCCCCCCcccccchhhhc---ccccccCCCCCCCCCCccccccchHhhhhhhccCCC
Q 020290 144 MEKVIESIQVACENADYGCKEKMSYSEKYDH---GRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHA 210 (328)
Q Consensus 144 le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~ 210 (328)
+.+.+..-...||. |...+...++..- ++.=.-..+.||+.||+|.+...+|..|+..++...
T Consensus 45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--
T ss_pred HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhh
Confidence 44444444448886 8777665443211 112223567899899999999999999999887753
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.89 E-value=0.062 Score=39.85 Aligned_cols=32 Identities=31% Similarity=0.711 Sum_probs=27.7
Q ss_pred Ceeeecccccccccccc-ccc--cccEeccccccc
Q 020290 93 EVLDCPVCYEPLNIPVY-QCG--NGHVVCHRCCCD 124 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~-qC~--~GH~~C~~C~~~ 124 (328)
..|.|.+|.+-|.+-.| ||+ .+|.||-.|-..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 45899999999999888 998 589999999654
No 80
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=91.21 E-value=0.39 Score=38.70 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=65.0
Q ss_pred Ceeeecccccccccccccc--cc-ccE-----ecccccccccCCCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVYQC--GN-GHV-----VCHRCCCDLMNKCPSCRLPNGHSRST--AMEKVIESIQVACENADYGC 162 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC--~~-GH~-----~C~~C~~~~~~~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC 162 (328)
..+.|++|...|......= .. -|. -+..|. ...|+.|...+.....+ .+..-...-.+.|+. .+|
T Consensus 24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C 98 (155)
T 2rpc_A 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--PGC 98 (155)
T ss_dssp CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--TTT
T ss_pred cccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--CCC
Confidence 3588999999987542200 00 011 011110 14799998877643222 222223334577864 368
Q ss_pred Cccccc-chhhhccccc-ccCCCCCCCCCCcccccc-chHhhhhhhccCC
Q 020290 163 KEKMSY-SEKYDHGRAC-HYTPCSCPLAACNFVGSF-HQIYQHFRGVHKH 209 (328)
Q Consensus 163 ~~~~~~-~~~~~He~~C-~~~~~~CP~~gC~~~g~~-~~L~~Hl~~~H~~ 209 (328)
...+.. ..|..|+..- .-.++.|+..+|+..... ..|..|+...+..
T Consensus 99 ~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~ 148 (155)
T 2rpc_A 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148 (155)
T ss_dssp CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence 877654 4567887632 345789986679876644 6799999865544
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=90.61 E-value=0.084 Score=41.44 Aligned_cols=76 Identities=13% Similarity=0.240 Sum_probs=47.5
Q ss_pred CCCCCCCcCCCC---Ccc------hhhHHhhhceeeecccCCCCCCcccccchhhhc----ccccccCCCCCCCCCCccc
Q 020290 127 NKCPSCRLPNGH---SRS------TAMEKVIESIQVACENADYGCKEKMSYSEKYDH----GRACHYTPCSCPLAACNFV 193 (328)
Q Consensus 127 ~~CP~C~~~~~~---~r~------~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H----e~~C~~~~~~CP~~gC~~~ 193 (328)
..||+|...+.. ..+ .-+.+.+......||. |...+...++... .+.=.-..+.||+.||+|.
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~ 99 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEE 99 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCE
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcch
Confidence 357777665432 111 2344555444567886 8877766554321 1122234578998899999
Q ss_pred cccchHhhhhhhc
Q 020290 194 GSFHQIYQHFRGV 206 (328)
Q Consensus 194 g~~~~L~~Hl~~~ 206 (328)
+...++..|+..+
T Consensus 100 ~~~~~~~~H~~~C 112 (116)
T 1rmd_A 100 VSLEKYNHHVSSH 112 (116)
T ss_dssp EEHHHHHHHHHTS
T ss_pred hhHhHHHHHHHHh
Confidence 9999999999865
No 82
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.17 E-value=0.15 Score=35.17 Aligned_cols=52 Identities=17% Similarity=0.484 Sum_probs=36.3
Q ss_pred eeecccCCCCCCcccccchhhhcccccccCCCCCCCCCCcccc-ccchHhhhhhhccC
Q 020290 152 QVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVG-SFHQIYQHFRGVHK 208 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 208 (328)
.+.|.. |...+....|..|+..+.-.|+.|++ .|+... .+..|..|+.....
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~ 62 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCN 62 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcc
Confidence 456664 77776666788888777778889962 487654 45689999876443
No 83
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.12 E-value=0.11 Score=39.71 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.8
Q ss_pred Ceeeeccccc-ccccccc---ccccccEeccccccc
Q 020290 93 EVLDCPVCYE-PLNIPVY---QCGNGHVVCHRCCCD 124 (328)
Q Consensus 93 ~~l~CpiC~~-~l~~Pv~---qC~~GH~~C~~C~~~ 124 (328)
+.+.|+||.+ ++.+|+. .| +|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C--~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTC--EVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTT--TEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcC--ChHHhHHHCHH
Confidence 3578999996 4778885 56 99999999987
No 84
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.32 E-value=0.12 Score=37.32 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=32.6
Q ss_pred chhhhccc-ccccCCCCCCCCCCccccccchHhhhhhhccCCCce
Q 020290 169 SEKYDHGR-ACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAE 212 (328)
Q Consensus 169 ~~~~~He~-~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~ 212 (328)
.+|..|+. .|+++++.|++ |+......+|..|. .......+
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~-~~c~~~~~ 44 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH--CDLELSILKLKEHE-DYCGARTE 44 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHH-HHHHHCEE
T ss_pred hHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHH-hHcCCCce
Confidence 46789986 89999999976 99888999999998 44443333
No 85
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=85.15 E-value=0.35 Score=33.72 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=30.7
Q ss_pred CCeeeecccccccccccc-cccccc---Eecccccccc-----cCCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNIPVY-QCGNGH---VVCHRCCCDL-----MNKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~-qC~~GH---~~C~~C~~~~-----~~~CP~C~~~~~ 137 (328)
.+.-.|.||+.-...|.. .|.+.+ .|=..|+.+| ...||.|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345679999987665654 775433 3444578876 257999988654
No 86
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.38 E-value=0.54 Score=34.28 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCccccc-chhhhccccccc---CCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290 162 CKEKMSY-SEKYDHGRACHY---TPCSCPLAACNFVGS-FHQIYQHFRGVHKHA 210 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~C~~---~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 210 (328)
|...+.. ..|..|+..-.- .++.|+. |+.... ...|..|+...|...
T Consensus 41 C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP 92 (95)
T ss_dssp SCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred CCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence 5554433 335566543222 5788975 887654 467999998888754
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=83.38 E-value=0.42 Score=36.66 Aligned_cols=38 Identities=37% Similarity=0.841 Sum_probs=29.3
Q ss_pred eeeccccccccccccccccccEecccccccc--cCCCCCCCcCCC
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL--MNKCPSCRLPNG 137 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~~CP~C~~~~~ 137 (328)
..||+|...|.. ..|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 689999998874 23666699998765 368999988764
No 88
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=80.40 E-value=0.63 Score=35.20 Aligned_cols=45 Identities=20% Similarity=0.579 Sum_probs=35.7
Q ss_pred CeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
+=|.|..|..+|....+.=.+|.++|..|..++ ..+|..|.++|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 458899999999765443346999999999876 478999988875
No 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=79.82 E-value=0.47 Score=36.51 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCeeeec--cccccccccccccccccEecccccccccCCCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCcccc
Q 020290 92 PEVLDCP--VCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMS 167 (328)
Q Consensus 92 ~~~l~Cp--iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~ 167 (328)
+..+.|+ +|...|......= .|.-=. ......|+.|...+.....+ .+..-...-.+.|+. .+|...+.
T Consensus 3 ~~~~~C~~~~C~~~f~~~~~l~--~H~~~h---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~ 75 (124)
T 1ubd_C 3 PRTIACPHKGCTKMFRDNSAMR--KHLHTH---GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFS 75 (124)
T ss_dssp --CEECCSTTCCCEESSHHHHH--HHHGGG---SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCS--TTCCCEES
T ss_pred CCcccCCCCCCcCccCCHHHHH--HHHHHc---CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC--CCCcCccC
Confidence 3457898 8998887542211 221100 11124699998776543221 111112233466763 26887665
Q ss_pred c-chhhhcccc-cccCCCCCCCCCCcccc-ccchHhhhhhhccC
Q 020290 168 Y-SEKYDHGRA-CHYTPCSCPLAACNFVG-SFHQIYQHFRGVHK 208 (328)
Q Consensus 168 ~-~~~~~He~~-C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 208 (328)
. ..|..|+.. -.-.++.||...|+... ....|..|+...+.
T Consensus 76 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp CHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred CHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence 4 456777652 33467899866798766 44689999887554
No 90
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=79.77 E-value=2 Score=31.87 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCCeeeeccccccccc----cccccc-cccEecccccccc
Q 020290 91 DPEVLDCPVCYEPLNI----PVYQCG-NGHVVCHRCCCDL 125 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~----Pv~qC~-~GH~~C~~C~~~~ 125 (328)
++...-||-|..++.. +...|+ +|+.||..|...+
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3344459999886642 123565 6999999998766
No 91
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.70 E-value=4.6 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=31.4
Q ss_pred eeeeccccccccccccccccccEecccccccccCCCCCCCcCC
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPN 136 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~ 136 (328)
.-.|..|..-+.-+.|.|.+|..||..=...-...|+...+..
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGV 67 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred CccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHH
Confidence 4689999987766567777799999977665446787765543
No 92
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=78.30 E-value=1.1 Score=32.59 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=27.6
Q ss_pred CCccccc-chhhhcccc-cccCCCCCCCCCCcccc-ccchHhhhhhhccCC
Q 020290 162 CKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVG-SFHQIYQHFRGVHKH 209 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 209 (328)
|...+.. ..|..|+.. -.-.++.|+. |+... ....|..|+...|..
T Consensus 42 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 42 CDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp SCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHHHHHHHTTCCSC
T ss_pred CCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHhcCC
Confidence 5554433 334555542 2235678875 87655 446799999876654
No 93
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.97 E-value=1.2 Score=33.98 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=62.9
Q ss_pred eeeeccccccccccccccccccEecccccccccCCCCCCCcCCCCCcchhhHHh-----hhceeeecccCCCCCCccccc
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKV-----IESIQVACENADYGCKEKMSY 168 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~~~~r~~~le~~-----l~~l~v~C~~~~~GC~~~~~~ 168 (328)
.+.|++|...|......= -|.. .-.......|+.|...+....++..-.. ...-.+.|+. |...+..
T Consensus 7 ~~~C~~C~~~f~~~~~l~--~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~ 78 (124)
T 2dlq_A 7 GVECPTCHKKFLSKYYLK--VHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRR 78 (124)
T ss_dssp SCCCTTTCCCCSSHHHHH--HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESS
T ss_pred CCCCCCCCCcCCCHHHHH--HHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCC
Confidence 478999999887542210 1210 0001112579999887654322211111 1234567875 8877654
Q ss_pred -chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290 169 -SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKHA 210 (328)
Q Consensus 169 -~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 210 (328)
..|..|... -.-.++.|+. |+.... ...|..|+...|...
T Consensus 79 ~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 121 (124)
T 2dlq_A 79 RMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSGP 121 (124)
T ss_dssp HHHHHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCCC
Confidence 456778753 3446788975 887654 467999999888753
No 94
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.44 E-value=2.3 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=26.6
Q ss_pred ecCCCCeeeecccccccccccc--ccc-cccEeccccccc
Q 020290 88 TLNDPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 88 ~~~~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
-+.|.+.-.|.+|...|..-.. .|. +|++||..|...
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456667789999999864322 343 299999999765
No 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=76.16 E-value=2.6 Score=31.18 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=18.6
Q ss_pred CCCCCCCCCCcccc-ccchHhhhhhhccCC
Q 020290 181 TPCSCPLAACNFVG-SFHQIYQHFRGVHKH 209 (328)
Q Consensus 181 ~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 209 (328)
.++.|+. |+... ....|..|+...+..
T Consensus 72 ~~~~C~~--C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 72 KPFKCQE--CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CTTSCSS--SCCCCSSHHHHHHHHHHTTSC
T ss_pred CCeECCC--cCCcccCHHHHHHHHHHhCCC
Confidence 4678875 87655 346799998765543
No 96
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=75.10 E-value=0.59 Score=38.22 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCCCCCCCCCccccccchHhh-hhhhcc
Q 020290 181 TPCSCPLAACNFVGSFHQIYQ-HFRGVH 207 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~~~~L~~-Hl~~~H 207 (328)
..+.||+.||+|.+...++.. |+..++
T Consensus 103 L~v~Cpn~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 103 LPAVCPSDGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp SEEECCSTTCCCEEEHHHHHHHTTTCCH
T ss_pred cccccCCCCCCCEeEHHHHHHHHHHHhH
Confidence 467899999999999999998 987654
No 97
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.57 E-value=6.3 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=30.6
Q ss_pred eeeccccccccccccccccccEecccccccccCCCCCCCcCC
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPN 136 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~ 136 (328)
-.|..|..-+.-+.|.|.+|..||..=...-...|+...+..
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~ 57 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEV 57 (64)
T ss_dssp CSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCS
T ss_pred CcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHH
Confidence 479999997665557777799999977665446787765543
No 98
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.26 E-value=1 Score=33.86 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=17.4
Q ss_pred CCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 181 TPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
.++.|+. |+.... ...|..|+...|..
T Consensus 68 ~~~~C~~--C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 68 KKLTCLE--CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp GGGEEGG--GTEECSSHHHHHHHHHHTSCC
T ss_pred CCccCcc--ccchhCCHHHHHHHHHHHcCC
Confidence 4566754 776553 35788888766654
No 99
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.82 E-value=1.7 Score=32.21 Aligned_cols=38 Identities=34% Similarity=0.852 Sum_probs=27.0
Q ss_pred eeeccccccccccccccccccEecccccccc--cCCCCCCCcCCC
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL--MNKCPSCRLPNG 137 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~~CP~C~~~~~ 137 (328)
+.||.|...|..- .++..|..|-..+ ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHH
Confidence 5799999988642 2455677887765 257999988764
No 100
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.42 E-value=3.8 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.635 Sum_probs=24.6
Q ss_pred CCCCeeeecccccccccccc--ccc-cccEeccccccc
Q 020290 90 NDPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 90 ~~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
.|.+.-.|.+|...|..-.. .|. +|.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34455689999999864322 343 299999999765
No 101
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=71.19 E-value=1.2 Score=35.07 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=36.2
Q ss_pred CCeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
++-|.|..|..+|....+.-..|..+|..|..++ ..+|..|.++|.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 3458999999999764343345999999999875 478999998876
No 102
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.74 E-value=2.6 Score=31.79 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=19.7
Q ss_pred CCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 181 TPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
.++.|+. |+.... ...|..|+...|..
T Consensus 79 ~~~~C~~--C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 79 KVLKCMY--CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp SSCBCSS--SCCBCSSHHHHHHHHHHTTTT
T ss_pred cceECCC--CCCccCCHHHHHHHHHHhCCc
Confidence 5678875 876554 46799999887764
No 103
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.49 E-value=2 Score=45.67 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=50.1
Q ss_pred CCCCeeeeccccccccccccccccc-cEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290 90 NDPEVLDCPVCYEPLNIPVYQCGNG-HVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ 152 (328)
Q Consensus 90 ~~~~~l~CpiC~~~l~~Pv~qC~~G-H~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~ 152 (328)
+.|+.|.|||=.+++++||.... | +++=+..|.+| ...||.-++++.. .+|.+|+..|..+.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilps-G~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPA-SKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCC-CCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 35788999999999999998432 6 68989999987 3689999988863 58888888887654
No 104
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.05 E-value=3.7 Score=30.17 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=25.3
Q ss_pred cCCCCeeeecccccccccccc--ccc-cccEeccccccc
Q 020290 89 LNDPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 89 ~~~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
+.|.+.-.|.+|...|..-.. .|. +|.+||..|...
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445566789999999874322 343 299999999875
No 105
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.21 E-value=4.8 Score=31.83 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=12.4
Q ss_pred CCCCCCCCCCcccccc-chHhhhhhhcc
Q 020290 181 TPCSCPLAACNFVGSF-HQIYQHFRGVH 207 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~~H 207 (328)
.++.|+.++|+..... ..|..|+...|
T Consensus 127 ~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 3445544445543322 34555555443
No 106
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.40 E-value=3 Score=29.61 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=32.9
Q ss_pred CeeeeccccccccccccccccccEecc-cccccc-cCCCCCCCcCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCH-RCCCDL-MNKCPSCRLPN 136 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~-~C~~~~-~~~CP~C~~~~ 136 (328)
+=|.|..|..+|..-.+.=.+|..+|. .|..++ ..+|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 458899999999864343346899999 699875 47888887543
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.39 E-value=2.7 Score=33.66 Aligned_cols=35 Identities=29% Similarity=0.733 Sum_probs=24.8
Q ss_pred CCCeeeecccccccccccc--ccc-cccEecccccccc
Q 020290 91 DPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCDL 125 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~~ 125 (328)
|.+.-.|.+|...|..-.. .|. +|++||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4445689999999874322 343 3999999997753
No 108
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.20 E-value=5.6 Score=31.40 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=37.7
Q ss_pred ceeeecccCCCCCCccccc-chhhhccccc-ccCCCCCCCCCCcccc-ccchHhhhhhhccCC
Q 020290 150 SIQVACENADYGCKEKMSY-SEKYDHGRAC-HYTPCSCPLAACNFVG-SFHQIYQHFRGVHKH 209 (328)
Q Consensus 150 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 209 (328)
.-.+.|+. .+|...+.. ..|..|+..- .-.++.|+..+|+... ....|..|+...|..
T Consensus 65 ~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~ 125 (155)
T 2gli_A 65 EKPHKCTF--EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125 (155)
T ss_dssp CCCCCCCS--TTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred CCCccCCC--CCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence 34566763 258776654 4567787532 3457889876788765 456899998666654
No 109
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.89 E-value=5.2 Score=30.15 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCcccc-cchhhhcccc----cccCCCCCCCCCCccccc-cch
Q 020290 127 NKCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMS-YSEKYDHGRA----CHYTPCSCPLAACNFVGS-FHQ 198 (328)
Q Consensus 127 ~~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~-~~~~~~He~~----C~~~~~~CP~~gC~~~g~-~~~ 198 (328)
..|+.|...+.....+ .+..-...-.+.|+. |...+. ...|..|+.. =.-.++.|+. |+.... ...
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~~~ 81 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRME 81 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCHHH
Confidence 4799998877643222 222222334577875 887654 4557788652 2345678975 887654 467
Q ss_pred HhhhhhhccCCCc
Q 020290 199 IYQHFRGVHKHAA 211 (328)
Q Consensus 199 L~~Hl~~~H~~~~ 211 (328)
|..|+...+....
T Consensus 82 l~~H~~~h~~~~~ 94 (124)
T 2dlq_A 82 LRLHMVSHTGEMP 94 (124)
T ss_dssp HHHHHHHHSSSCS
T ss_pred HHHHHHHcCCCCC
Confidence 9999987665543
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.83 E-value=2.7 Score=29.22 Aligned_cols=37 Identities=32% Similarity=0.751 Sum_probs=27.1
Q ss_pred eecccccccccc-ccccc-cccEecccccccc---cCCCCCC
Q 020290 96 DCPVCYEPLNIP-VYQCG-NGHVVCHRCCCDL---MNKCPSC 132 (328)
Q Consensus 96 ~CpiC~~~l~~P-v~qC~-~GH~~C~~C~~~~---~~~CP~C 132 (328)
.|-.|...+.+. +|+|+ +++.||.+|-.=+ ...||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 599999998654 47776 4889999994322 3689987
No 111
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.68 E-value=9.8 Score=27.72 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCeeeecc--ccccccc----ccccc------ccccEecccccccccCCCCCCCc
Q 020290 92 PEVLDCPV--CYEPLNI----PVYQC------GNGHVVCHRCCCDLMNKCPSCRL 134 (328)
Q Consensus 92 ~~~l~Cpi--C~~~l~~----Pv~qC------~~GH~~C~~C~~~~~~~CP~C~~ 134 (328)
....-||. |...+.. +..+| .+|+.||..|...+.. -.|..
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 34667998 9887742 22378 4699999999998743 45644
No 112
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.50 E-value=3.7 Score=31.33 Aligned_cols=42 Identities=29% Similarity=0.712 Sum_probs=33.7
Q ss_pred eeeeccccccccccccccccccEecccccccc---cCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL---MNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~---~~~CP~C~~~~~ 137 (328)
-+.|-.|-...+. .+.|. .|-+|..|+..+ +..||+|..++.
T Consensus 28 ~~nCKsCWf~~k~-LV~C~-dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKG-LVECN-NHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSS-EEECS-SCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCC-eeeec-chhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4789999888775 34573 799999999875 578999998874
No 113
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=62.33 E-value=2.7 Score=29.30 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=39.6
Q ss_pred CCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-chhhhccc-ccccCCCCCCCCCCccccc-cchHhhh
Q 020290 128 KCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SEKYDHGR-ACHYTPCSCPLAACNFVGS-FHQIYQH 202 (328)
Q Consensus 128 ~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~gC~~~g~-~~~L~~H 202 (328)
.|+.|...+.....+ .+..-...-...|+. |...+.. ..+..|+. .-.-.++.|+. |+.... ...|..|
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H 76 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITH 76 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT--TSCEESSHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC--cchhhCChHHHHHH
Confidence 466676655432211 122222334566764 7665543 34566654 22335678875 876553 4678889
Q ss_pred hhhc
Q 020290 203 FRGV 206 (328)
Q Consensus 203 l~~~ 206 (328)
+...
T Consensus 77 ~~~H 80 (82)
T 2kmk_A 77 SRKH 80 (82)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8754
No 114
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.40 E-value=3 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=26.1
Q ss_pred ccccccCCCCCCCCCCccccccchHhhhhhhccCCCc
Q 020290 175 GRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAA 211 (328)
Q Consensus 175 e~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~ 211 (328)
++.|+.+++.|+. |+.......|..|+.. +....
T Consensus 3 ~~~C~~~~~~C~~--C~k~f~~~~L~~H~~~-~~~~p 36 (66)
T 2eod_A 3 SGSSGKRTQPCTY--CTKEFVFDTIQSHQYQ-CPRLP 36 (66)
T ss_dssp SSCCCCCEEECSS--SCCEEEHHHHHHHHHH-CSSSE
T ss_pred cccCCCCCeeccc--cCCccCHHHHHHHHHH-cCCcC
Confidence 3579999999976 8866667889999987 54443
No 115
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.96 E-value=2.3 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=27.4
Q ss_pred CeeeeccccccccccccccccccEecccccccccCCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSC 132 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C 132 (328)
+=|.|..|...|....+.=.+|..+|..|..++-..|+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~~ 71 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSSC
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCCC
Confidence 4488888988886543433358889998888764556543
No 116
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=60.59 E-value=3.3 Score=28.97 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=42.2
Q ss_pred CC--CCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-chhhhcccccccCCCCCCCCC-Cccccc-cchHh
Q 020290 128 KC--PSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SEKYDHGRACHYTPCSCPLAA-CNFVGS-FHQIY 200 (328)
Q Consensus 128 ~C--P~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~g-C~~~g~-~~~L~ 200 (328)
.| +.|...+....++ .+..-...-.+.|+. .||...+.. ..+..|+..-.- +.|+..+ |+.... ...|.
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~ 78 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL 78 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence 46 6676655432211 122223344567764 368776554 445667653221 6776544 887664 46788
Q ss_pred hhhhhcc
Q 020290 201 QHFRGVH 207 (328)
Q Consensus 201 ~Hl~~~H 207 (328)
.|+...|
T Consensus 79 ~H~~~hh 85 (85)
T 2j7j_A 79 KHVAECH 85 (85)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 8987655
No 117
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=60.47 E-value=3 Score=35.15 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=33.0
Q ss_pred CeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
+-|.|..|..+|....| -.+|..+|..|..++ ..+|..|.+++.
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccC
Confidence 45788889888876444 246889999998775 468888888764
No 118
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=59.80 E-value=3 Score=39.61 Aligned_cols=54 Identities=24% Similarity=0.651 Sum_probs=37.1
Q ss_pred eeecccccccccccc--ccccccEecccccccc-------cCCCCCCCcCCCC---CcchhhHHhhhc
Q 020290 95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL-------MNKCPSCRLPNGH---SRSTAMEKVIES 150 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~-------~~~CP~C~~~~~~---~r~~~le~~l~~ 150 (328)
|.||+=+..+..|+. .| .|+-|-+-..=+ ...||+|.+.+.. .-+..+.+++..
T Consensus 250 L~CPlS~~ri~~PvRg~~C--~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINC--KHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp SBCTTTSSBCSSEEEETTC--CSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred ecCCCccccccccCcCCcC--CCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 889999999999997 78 998765532111 2589999887653 234445555544
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.17 E-value=3.5 Score=36.66 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.6
Q ss_pred eeeeccccccccccccccc-cccEecccccccc-----cCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNIPVYQCG-NGHVVCHRCCCDL-----MNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~-~GH~~C~~C~~~~-----~~~CP~C~~~~~ 137 (328)
...|.+|..++.. -..|+ ++|.|=..|+.++ ...||.|+.+..
T Consensus 180 i~~C~iC~~iv~~-g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQ-GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSS-CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhC-CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 6779999999985 34564 3777767788775 248999988754
No 120
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.82 E-value=5.5 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=27.9
Q ss_pred CeeeeccccccccccccccccccEecccccccc-cCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPS 131 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~ 131 (328)
+=|.|..|...|....+.-.+|.++|..|..++ ...|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 348899999998754443346899999999875 345543
No 121
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.68 E-value=3.4 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=34.4
Q ss_pred Ceeeeccccccccc--cccccccccEecccccccc-cC--CCCCCCcCCCC
Q 020290 93 EVLDCPVCYEPLNI--PVYQCGNGHVVCHRCCCDL-MN--KCPSCRLPNGH 138 (328)
Q Consensus 93 ~~l~CpiC~~~l~~--Pv~qC~~GH~~C~~C~~~~-~~--~CP~C~~~~~~ 138 (328)
+-|.|..|..+|.+ ..+.=.+|..+|..|..++ .. .|..|.++|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 34889999999962 2332235899999999875 34 89999998863
No 122
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.30 E-value=3.9 Score=30.47 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 162 CKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
|...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|+...|..
T Consensus 43 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~ 91 (110)
T 2csh_A 43 CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCTKS 91 (110)
T ss_dssp TSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEESCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHcCCCCCeeCCC--CcchhcCHHHHHHHHHHcccc
Confidence 5444332 334555442 2234678875 876554 46799999887753
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.60 E-value=5.2 Score=29.95 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=23.9
Q ss_pred CCCeeeecccccccccccc--ccc-cccEeccccccc
Q 020290 91 DPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
+.+.-.|.+|...|..-.. .|. +|++||..|...
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4445679999998863221 343 299999999876
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.11 E-value=4.5 Score=38.24 Aligned_cols=54 Identities=24% Similarity=0.484 Sum_probs=37.2
Q ss_pred eeecccccccccccc--ccccccEecccccccc-------cCCCCCCCcCCCC---CcchhhHHhhhc
Q 020290 95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL-------MNKCPSCRLPNGH---SRSTAMEKVIES 150 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~-------~~~CP~C~~~~~~---~r~~~le~~l~~ 150 (328)
|.||+=+..++.|+. .| .|.-|-+-..=+ ...||.|.+.+.. .-+..+..++..
T Consensus 216 L~CPlS~~ri~~P~Rg~~C--~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTC--THLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp SBCTTTCSBCSSEEEETTC--CCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeCCCccceeccCCcCCCC--CCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 789999999999987 78 998765432211 2589999988753 234445555543
No 125
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.60 E-value=13 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=30.5
Q ss_pred eeeccccccccccccccccccEecccccccccCCCCCCCcCC
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPN 136 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~ 136 (328)
-.|..|..-+.-+.|.|.+|..||..=...-...|+..-+..
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~ 57 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSA 57 (64)
T ss_dssp CCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCC
T ss_pred CcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHH
Confidence 579999997665557777799999977665445787665443
No 126
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=53.52 E-value=2.5 Score=35.89 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=34.5
Q ss_pred CCeeeeccccccccc--cccccccccEeccccccccc-C--CCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNI--PVYQCGNGHVVCHRCCCDLM-N--KCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~--Pv~qC~~GH~~C~~C~~~~~-~--~CP~C~~~~~ 137 (328)
++=|.|..|...|.. ..+.-.+|..+|..|..++. . .|..|.+++.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 345899999999975 23333469999999998763 3 5999988764
No 127
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=53.07 E-value=4.7 Score=33.44 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=35.3
Q ss_pred CCeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
++=|.|..|..+|....| -.+|..+|..|..++ ..+|..|.++|.
T Consensus 31 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 345899999999976545 246999999998875 578999988765
No 128
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=52.49 E-value=3 Score=32.88 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=34.6
Q ss_pred CCeeeeccccccccc--cccccccccEeccccccccc-C--CCCCCCcCCC
Q 020290 92 PEVLDCPVCYEPLNI--PVYQCGNGHVVCHRCCCDLM-N--KCPSCRLPNG 137 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~--Pv~qC~~GH~~C~~C~~~~~-~--~CP~C~~~~~ 137 (328)
++=|.|..|..+|.. ..+.-..|..+|..|..++. . .|..|.+++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 345899999999963 23333569999999998863 4 7999988764
No 129
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=52.36 E-value=7.7 Score=28.80 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=38.6
Q ss_pred hhceeeecccCCCCCCccc--ccchhhhcccccccCCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 148 IESIQVACENADYGCKEKM--SYSEKYDHGRACHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 148 l~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
...-.+.|+. |...+ ....|..|+....-.++.|+. |+.... ...|..|+...|..
T Consensus 30 ~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~--Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 30 VDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH--CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS--SCCCCSSHHHHHHHHHHHTCC
T ss_pred cCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC--CCCeeCCHHHHHHHhHHhcCC
Confidence 3445677875 88777 456677887654667889975 886654 46799996566753
No 130
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.25 E-value=43 Score=24.18 Aligned_cols=41 Identities=17% Similarity=0.439 Sum_probs=29.1
Q ss_pred eeeccccccccccccccccccEecccccccccCCCCCCCcC
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLP 135 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~ 135 (328)
-.|..|..-+.-..+.|.+|..||..=...-...|+..-+.
T Consensus 26 nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA 66 (74)
T ss_dssp TBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGG
T ss_pred CcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhh
Confidence 47999998655444677779999987665444678766443
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.38 E-value=9.1 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.624 Sum_probs=21.1
Q ss_pred eecccccccccccc--ccc-cccEeccccccc
Q 020290 96 DCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 96 ~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
.|.+|...|..-.. .|. +|.+||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 69999998864322 333 299999999764
No 132
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=49.38 E-value=5.9 Score=31.40 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCccccc-chhhhccccc-ccCCCCCCCCCCccccc-cchHhhhhhhccCCCc
Q 020290 162 CKEKMSY-SEKYDHGRAC-HYTPCSCPLAACNFVGS-FHQIYQHFRGVHKHAA 211 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~C-~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 211 (328)
|...+.. ..|..|+..- .-.++.|+..+|+.... ...|..|+...+....
T Consensus 68 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~ 120 (155)
T 2rpc_A 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120 (155)
T ss_dssp SSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS
T ss_pred cccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC
Confidence 7765543 4567776532 23578898767987664 4679999986655443
No 133
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.29 E-value=44 Score=25.00 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCeeeecccccccccccccccc---c-cEeccccccc--c---cCCCCCCCcC
Q 020290 91 DPEVLDCPVCYEPLNIPVYQCGN---G-HVVCHRCCCD--L---MNKCPSCRLP 135 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~qC~~---G-H~~C~~C~~~--~---~~~CP~C~~~ 135 (328)
+.+...| +|..+....+.+|.+ . ..|=..|+.- . ...||.|+..
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 3345778 999986655556653 1 2333344432 1 2468888654
No 134
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=48.78 E-value=8.6 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCCCCCCCCCcccccc-chHhhhhhhccCC
Q 020290 181 TPCSCPLAACNFVGSF-HQIYQHFRGVHKH 209 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~~H~~ 209 (328)
+|+.|+.++|+....+ ..|..|+...|..
T Consensus 26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence 6899988789987755 5799998766763
No 135
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=48.63 E-value=5 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=25.1
Q ss_pred CeeeeccccccccccccccccccEecccccccc-cCCCCCCCc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRL 134 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~ 134 (328)
+=|.|..|...|..-.+.-.+|.++|..|..++ ..+|-.|.+
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp SSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred ccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCC
Confidence 458899999988764443346889999998875 456766643
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=46.76 E-value=9 Score=30.42 Aligned_cols=41 Identities=17% Similarity=0.408 Sum_probs=26.0
Q ss_pred Ceeeecccccccccccc--ccc-cccEecccccccc---cCCCCCCC
Q 020290 93 EVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCDL---MNKCPSCR 133 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~~---~~~CP~C~ 133 (328)
+...|..|...|..-.. .|. +|.+||..|..+. ...|-.|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34579999998864322 343 3999999998763 13455553
No 137
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.60 E-value=6.5 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.706 Sum_probs=23.9
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|..+|....+.=.+|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 347888998888654443346888999888764
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.52 E-value=11 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=21.8
Q ss_pred eeecccccccccccc--ccc-cccEeccccccc
Q 020290 95 LDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
-.|.+|...|..-.. .|. +|++||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 479999998864322 343 299999999775
No 139
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=46.41 E-value=9.2 Score=27.22 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=21.2
Q ss_pred CCCeeeeccccccccccccccccccEeccccccc
Q 020290 91 DPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
..+.|.||+|...|..-. .. |-.+|..|...
T Consensus 5 LL~iL~CP~ck~~L~~~~-~~--~~LiC~~cg~~ 35 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ-DK--QELWSRQAKLA 35 (68)
T ss_dssp SSCCCBCSSSCCBCEEET-TT--TEEEETTTTEE
T ss_pred HhhheECCCCCCcCeEeC-CC--CEEEcCCCCcE
Confidence 356789999999876422 34 77777766443
No 140
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=46.29 E-value=12 Score=24.24 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=27.6
Q ss_pred CCcccc-cchhhhcccc-cccCCCCCCCCCCcccc-ccchHhhhhhhccCCC
Q 020290 162 CKEKMS-YSEKYDHGRA-CHYTPCSCPLAACNFVG-SFHQIYQHFRGVHKHA 210 (328)
Q Consensus 162 C~~~~~-~~~~~~He~~-C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~~ 210 (328)
|...+. ...+..|+.. -.-.++.|+. |+... ....|..|+...|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence 444433 2334555542 2235678875 77655 3467999987778653
No 141
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=46.06 E-value=8.4 Score=27.17 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred ceeeecccCCCCCCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccC
Q 020290 150 SIQVACENADYGCKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHK 208 (328)
Q Consensus 150 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 208 (328)
.-.+.|+. |...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|+...+.
T Consensus 32 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~ 87 (90)
T 1a1h_A 32 QKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLR 87 (90)
T ss_dssp CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHHHHHHGGGGC
T ss_pred CCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC--CCchhCCHHHHHHHHHHhcc
Confidence 34466765 7665543 345666542 2345678975 876553 4679999876543
No 142
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.12 E-value=9.2 Score=25.36 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=31.9
Q ss_pred eeecccCCCCCCccccc-chhhhcccc---cccCCCCCCCCCCccccc-cchHhhhhhhccC
Q 020290 152 QVACENADYGCKEKMSY-SEKYDHGRA---CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHK 208 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~-~~~~~He~~---C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 208 (328)
...|+. |...+.. ..+..|... -.-.++.|+. |+.... ...|..|+...|.
T Consensus 10 ~~~C~~----C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 10 TYRCKV----CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp EEECTT----TCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred ceECCC----CcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHcC
Confidence 345553 6655543 345666543 2446788975 876554 4679999988775
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.64 E-value=9.9 Score=33.03 Aligned_cols=30 Identities=23% Similarity=0.611 Sum_probs=22.0
Q ss_pred eeecccccccccccc--ccc-cccEeccccccc
Q 020290 95 LDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
-.|++|...|..-.. .|. +|++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 479999998864322 343 399999999775
No 144
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.18 E-value=11 Score=26.04 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=33.7
Q ss_pred eeecccCCCCCCccccc-chhhhccc-ccc--cCCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290 152 QVACENADYGCKEKMSY-SEKYDHGR-ACH--YTPCSCPLAACNFVGS-FHQIYQHFRGVHKHA 210 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~--~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 210 (328)
.+.|+. |...+.. ..|..|+. .-. -.++.|+. |+.... ...|..|+...|...
T Consensus 15 ~~~C~~----C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 15 PYECYI----CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp SEECTT----TCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCCS
T ss_pred CeECCC----cCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCCC
Confidence 355654 6665543 34566654 222 25788975 887654 467999999988753
No 145
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=44.02 E-value=6.2 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=18.5
Q ss_pred eeecccCCCCCCcccccchhhhccccccc
Q 020290 152 QVACENADYGCKEKMSYSEKYDHGRACHY 180 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~ 180 (328)
.+.||| -....+....+..|...|.-
T Consensus 5 ~v~CPy---d~~H~i~~~~l~~Hl~kC~~ 30 (37)
T 2vy4_A 5 VVICPY---DSNHHMPKSSLAKHMASCRL 30 (37)
T ss_dssp CEECTT---TSSCEECGGGHHHHHHHHHH
T ss_pred EEECCC---CCCeEeCHHHHHHHHHHHhh
Confidence 467776 46677777788888777754
No 146
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=43.98 E-value=7.6 Score=31.95 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=33.9
Q ss_pred CCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhh
Q 020290 128 KCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQH 202 (328)
Q Consensus 128 ~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~H 202 (328)
.|+.|...+....++ .+..-...-.+.|+. |...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H 152 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTH 152 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC--CCcccCCHHHHHHH
Confidence 466666554322111 111122233455653 6555443 234555442 2234556653 555443 2456666
Q ss_pred hhhccCC
Q 020290 203 FRGVHKH 209 (328)
Q Consensus 203 l~~~H~~ 209 (328)
+...+..
T Consensus 153 ~~~H~~~ 159 (190)
T 2i13_A 153 QRTHTGE 159 (190)
T ss_dssp HHHHHCC
T ss_pred HHhcCCC
Confidence 6554443
No 147
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=43.79 E-value=0.79 Score=33.18 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=43.1
Q ss_pred CCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-chhhhcccccccCCCCCCCCCCcccc-ccchHhhhh
Q 020290 128 KCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SEKYDHGRACHYTPCSCPLAACNFVG-SFHQIYQHF 203 (328)
Q Consensus 128 ~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~gC~~~g-~~~~L~~Hl 203 (328)
.|+.|...+.....+ .+..-...-...|+. |...+.. ..|..|...-.-.++.|+. |+... ....|..|+
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~--C~~~f~~~~~L~~H~ 78 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK--VEELLSKNYHLENEV 78 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH--HHHHHHHHhhhHHHH
Confidence 477776655432211 122222334566764 7766543 4466776543345667754 77654 445799999
Q ss_pred hhccCC
Q 020290 204 RGVHKH 209 (328)
Q Consensus 204 ~~~H~~ 209 (328)
...|..
T Consensus 79 ~~~h~~ 84 (88)
T 1llm_C 79 ARLKKL 84 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 148
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.93 E-value=12 Score=34.53 Aligned_cols=42 Identities=26% Similarity=0.639 Sum_probs=29.3
Q ss_pred eeeeccccccccccccc--c-ccc--cEeccccccccc---CCCCCCCcC
Q 020290 94 VLDCPVCYEPLNIPVYQ--C-GNG--HVVCHRCCCDLM---NKCPSCRLP 135 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~q--C-~~G--H~~C~~C~~~~~---~~CP~C~~~ 135 (328)
.-.||+|...-.--+.. = ..| +..|+-|-..|. .+||.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 35799999876543332 1 235 578999999873 689999765
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.22 E-value=7.8 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCeeeeccccccccccccccccccEecccccccc
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
++=|.|..|...|....+.=.+|.++|..|..++
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 3458899999888754443346889999988764
No 150
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=42.05 E-value=6 Score=31.41 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCCCCCCCCCcccc-ccchHhhhhhhccCC
Q 020290 181 TPCSCPLAACNFVG-SFHQIYQHFRGVHKH 209 (328)
Q Consensus 181 ~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 209 (328)
.|+.|+. |+... ....|..|+...|..
T Consensus 77 k~~~C~~--C~k~F~~~~~L~~H~~~hh~~ 104 (133)
T 2lt7_A 77 RRYQCLA--CGKSFINYQFMSSHIKSVHSQ 104 (133)
T ss_dssp CCEEESS--SCCEESSHHHHHHHHHHHTCC
T ss_pred ccccCCC--CCCCcCCHHHHHHHhHHhcCC
Confidence 3556654 66544 335677777766653
No 151
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.01 E-value=14 Score=27.73 Aligned_cols=44 Identities=20% Similarity=0.643 Sum_probs=30.5
Q ss_pred eeeeccccccccc----ccc-ccc-cccEecccccccc----cCCCCCCCcCCC
Q 020290 94 VLDCPVCYEPLNI----PVY-QCG-NGHVVCHRCCCDL----MNKCPSCRLPNG 137 (328)
Q Consensus 94 ~l~CpiC~~~l~~----Pv~-qC~-~GH~~C~~C~~~~----~~~CP~C~~~~~ 137 (328)
.-.|.||.+-+-. -+| -|. ++--+|..|+.-- ...||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999997521 133 443 3778999998742 478999988764
No 152
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=40.97 E-value=8.7 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcccc-ccchHhhhhhhccC
Q 020290 181 TPCSCPLAACNFVG-SFHQIYQHFRGVHK 208 (328)
Q Consensus 181 ~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 208 (328)
.++.|+. |+... ....|..|+...|+
T Consensus 31 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 31 KPYKCEF--CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp CCEECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred CCcCCCC--CcchhCCHHHHHHHHHHhcC
Confidence 4677865 77655 34678899887763
No 153
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.45 E-value=10 Score=26.69 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=22.3
Q ss_pred CeeeeccccccccccccccccccEecc-cccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCH-RCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~-~C~~~~ 125 (328)
+=|.|..|...|..-.+.=.+|.++|. .|..++
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~ 68 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHH
T ss_pred CCCCCCCCCCccCCCceEeECCEEecchHHHHHh
Confidence 347788888888754342335788888 687764
No 154
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.38 E-value=78 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=29.5
Q ss_pred eeeeccccccccc-cccccccccEecccccccccCCCCCCCcC
Q 020290 94 VLDCPVCYEPLNI-PVYQCGNGHVVCHRCCCDLMNKCPSCRLP 135 (328)
Q Consensus 94 ~l~CpiC~~~l~~-Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~ 135 (328)
.-.|..|..-+.- .-|.|.+|..||..=...-...|+..-+.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~ 67 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKS 67 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSS
T ss_pred CccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhH
Confidence 3579999986544 13567779999998765545678875443
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.30 E-value=9.8 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=13.3
Q ss_pred eeeccccccccccccccccccEeccccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
|.|..|...|..-.|.=.+|..+|..|..+
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 455555555543222112345555555544
No 156
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.81 E-value=13 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=32.2
Q ss_pred eecccCCCCCCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290 153 VACENADYGCKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKHA 210 (328)
Q Consensus 153 v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 210 (328)
+.|+. |...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|+...|...
T Consensus 10 ~~C~~----C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~ 64 (70)
T 1x5w_A 10 EKCSE----CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDM 64 (70)
T ss_dssp EECSS----SSCEESSHHHHHHHHGGGCCSCSEECSS--SSCEESSHHHHHHHHHHHHSSS
T ss_pred eECCC----CCcccCCHHHHHHHHHHcCCCCCEeCCC--CCCccCCHHHHHHHHHHHhCCC
Confidence 45553 6655443 345666653 2345688975 876654 467999998877653
No 157
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=39.79 E-value=10 Score=31.15 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=54.0
Q ss_pred eeeeccccccccccccccccccEecccccccccCCCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-ch
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SE 170 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~ 170 (328)
.+.|++|...|......= .|..- -.......|+.|...+.....+ .+..-...-.+.|+. |...+.. ..
T Consensus 21 ~~~C~~C~~~f~~~~~l~--~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~ 92 (190)
T 2i13_A 21 PYACPECGKSFSRSDHLA--EHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRAN 92 (190)
T ss_dssp ----------CCSSHHHH--HGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHH
T ss_pred CCcCCCCccccCCHHHHH--HHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc----cCCccCCHHH
Confidence 488999999887643200 12100 0011124799998776543221 222223344577875 8877654 45
Q ss_pred hhhccc-ccccCCCCCCCCCCccccc-cchHhhhhhhccCCCc
Q 020290 171 KYDHGR-ACHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKHAA 211 (328)
Q Consensus 171 ~~~He~-~C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 211 (328)
+..|.. .-.-.++.|+. |+.... ...|..|+...+....
T Consensus 93 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~ 133 (190)
T 2i13_A 93 LRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKP 133 (190)
T ss_dssp HHHHHHHHHTCCCEECTT--TCCEESSHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhCCCCC
Confidence 677865 33446788975 886553 4679999987665543
No 158
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=39.52 E-value=11 Score=31.74 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=28.0
Q ss_pred CeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCC
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPN 136 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~ 136 (328)
+=|.|..|...|..-.+.=.+|.++|..|..++ ..+|..|.+.+
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 347777777777643332224777888887764 46777776654
No 159
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=39.50 E-value=15 Score=24.85 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=32.4
Q ss_pred eeecccCCCCCCccccc-chhhhccc-ccccCCCCCCCCCCcccccc-chHhhhhh
Q 020290 152 QVACENADYGCKEKMSY-SEKYDHGR-ACHYTPCSCPLAACNFVGSF-HQIYQHFR 204 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~gC~~~g~~-~~L~~Hl~ 204 (328)
...|+. .||...+.. ..|..|+. .-.-.++.|+...|+..... ..|..|+.
T Consensus 17 ~~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 17 SHICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70 (72)
T ss_dssp CEECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred ceeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence 356764 468876654 34567764 33456788976578876544 56888875
No 160
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.17 E-value=15 Score=26.22 Aligned_cols=33 Identities=21% Similarity=0.726 Sum_probs=22.4
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|..+|..-.+.=.+|.++|..|..++
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 347788888888754343335788888887764
No 161
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=38.60 E-value=18 Score=25.87 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCccccc-chhhhccc-ccccCCCCCCCCCCccccc-cchHhhhhhhc
Q 020290 161 GCKEKMSY-SEKYDHGR-ACHYTPCSCPLAACNFVGS-FHQIYQHFRGV 206 (328)
Q Consensus 161 GC~~~~~~-~~~~~He~-~C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~ 206 (328)
.|...+.. ..|..|+. .-.-.++.|+. |+.... ...|..|+...
T Consensus 52 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 52 GCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp SCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBCSSHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCccCCHHHHHHHHHHh
Confidence 35444332 23445543 22335688875 776553 46788997653
No 162
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=38.14 E-value=10 Score=21.74 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.0
Q ss_pred CCcccccchhhhcccc
Q 020290 162 CKEKMSYSEKYDHGRA 177 (328)
Q Consensus 162 C~~~~~~~~~~~He~~ 177 (328)
|...++-..+..|++.
T Consensus 12 cqq~mpaahin~hldr 27 (29)
T 3vhs_A 12 CQQMMPAAHINSHLDR 27 (29)
T ss_dssp TCCEEEGGGHHHHHHH
T ss_pred HHHhCcHHHHHHHHhc
Confidence 4444444444444433
No 163
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.08 E-value=15 Score=26.08 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=20.1
Q ss_pred CCCeeeeccccccccccccccccccEecccccc
Q 020290 91 DPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCC 123 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~ 123 (328)
..+.|.||+|...|.--. ..|..+|..|..
T Consensus 7 LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~ 36 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLE---SEQLLVNERLNL 36 (67)
T ss_dssp GTCCCBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred HHHHhCCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 356799999999876421 136677766644
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.95 E-value=14 Score=32.22 Aligned_cols=29 Identities=21% Similarity=0.757 Sum_probs=21.3
Q ss_pred eecccccccccccc--ccc-cccEeccccccc
Q 020290 96 DCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 96 ~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
.|.+|...|..-.. .|. +|++||..|...
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 79999998863222 343 399999999765
No 165
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=37.61 E-value=26 Score=23.48 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=18.4
Q ss_pred CeeeeccccccccccccccccccEeccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
|...|+-|. .+.+| -+.+|..|+.-
T Consensus 10 D~WkC~~C~-k~N~P------l~ryC~rCwaL 34 (53)
T 2cr8_A 10 DEWQCTECK-KFNSP------SKRYCFRCWAL 34 (53)
T ss_dssp CCEECSSSC-CEECS------SCCBCTTTCCB
T ss_pred ceeeccccc-ccCCC------ccchhHHHHHh
Confidence 568999999 56666 45667788764
No 166
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.91 E-value=12 Score=23.03 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=10.2
Q ss_pred eeeecccccccccc
Q 020290 94 VLDCPVCYEPLNIP 107 (328)
Q Consensus 94 ~l~CpiC~~~l~~P 107 (328)
-|.||+|..-|..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 47788888777655
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.51 E-value=8.7 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=21.6
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|...|..-.+.-.+|.++|..|..++
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 32 TCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred cCCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 347778888777654332345778888887664
No 168
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.12 E-value=9.8 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=22.0
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|..+|....+.=.+|.++|..|..++
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 347788888887654332235788888887764
No 169
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.99 E-value=10 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=22.6
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|...|....+.=.+|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 457788888888654442234788888887764
No 170
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.79 E-value=13 Score=25.58 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCccccc-chhhhcccccc----cCCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290 162 CKEKMSY-SEKYDHGRACH----YTPCSCPLAACNFVGS-FHQIYQHFRGVHKHA 210 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~C~----~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~ 210 (328)
|...+.. ..|..|+..-. -.++.|+. |+.... ...|..|+...|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCC
Confidence 5555443 33555654321 45778975 887654 467999998888754
No 171
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.33 E-value=15 Score=24.93 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=31.2
Q ss_pred eeecccCCCCCCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 152 QVACENADYGCKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
.+.|+. |...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|+...+..
T Consensus 14 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~ 68 (72)
T 1x6e_A 14 PYGCVE----CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSG 68 (72)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHGGGCSCCEECSS--SCCEESSHHHHHHHHHHHHSS
T ss_pred CccCCC----CCCccCCHHHHHHHHHhcCCCCCeECCC--CCcccCCHHHHHHHHHhcCCC
Confidence 455654 6655543 345566542 2345778975 876554 46799998775543
No 172
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.78 E-value=9.2 Score=26.06 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.3
Q ss_pred eeeeccccccccccccccccccEeccccccc
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
=|.|..|..+|....+.=.+|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 4677777777765433223477777777654
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.67 E-value=9.2 Score=26.42 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=23.7
Q ss_pred CCeeeeccccccccccccccccccEecccccccc
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
++=|.|..|..+|..-.+.=.+|..+|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 3458888888888765442235888888887764
No 174
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.46 E-value=8 Score=28.41 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=34.8
Q ss_pred eeeecccCCCCCCcccc--cchhhhcccccc--cCCCCCCCCCCccccc-cchHhhhhhhccCCCc
Q 020290 151 IQVACENADYGCKEKMS--YSEKYDHGRACH--YTPCSCPLAACNFVGS-FHQIYQHFRGVHKHAA 211 (328)
Q Consensus 151 l~v~C~~~~~GC~~~~~--~~~~~~He~~C~--~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 211 (328)
-.+.|+. |...+. ...|..|+.... -.++.|+. |+.... ...|..|+...|....
T Consensus 23 ~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~kp 82 (98)
T 2gqj_A 23 GEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSAKP 82 (98)
T ss_dssp SCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHSCSCS
T ss_pred CCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC--CCCccCCHHHHHHHHHHHcCCCC
Confidence 4456664 666554 345666665432 35678975 876654 4679999988886543
No 175
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.36 E-value=17 Score=25.91 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=19.5
Q ss_pred CCCeeeeccccccccccccccccccEecccccc
Q 020290 91 DPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCC 123 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~ 123 (328)
..+.|.||+|...|.--. ..|-.+|..|..
T Consensus 5 LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR---AQAELVCNADRL 34 (70)
T ss_dssp CCCCCBCTTTCCBEEEET---TTTEEEETTTTE
T ss_pred HhhheECCCCCCcCEEeC---CCCEEEcCCCCc
Confidence 356789999999886422 125566666643
No 176
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=34.04 E-value=15 Score=26.25 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=21.1
Q ss_pred cchhhhcccccccCCCCCCCCCCccccccchHhhhhhhc
Q 020290 168 YSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206 (328)
Q Consensus 168 ~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~ 206 (328)
..+..-|+.+|.|.. ||+ |.-+.+..-|..|...+
T Consensus 18 ~~DqelHdlnCs~Ni--CPY--C~nRls~eGl~RHV~~C 52 (77)
T 2l7x_A 18 AIDAEMHDLNCSYNI--CPY--CASRLTSDGLARHVTQC 52 (77)
T ss_dssp HHHHHHHHHHHTTTC--CTT--TCCCCCTTTHHHHHTTC
T ss_pred HHHHHHHHcCCCccc--Chh--hhccCCccchhhhcccC
Confidence 344456666777764 554 66666666677776543
No 177
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.91 E-value=15 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=18.2
Q ss_pred CCCCCCCCCCcccccc-chHhhhhhh
Q 020290 181 TPCSCPLAACNFVGSF-HQIYQHFRG 205 (328)
Q Consensus 181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~ 205 (328)
+|+.|+..+|+..... ..|..|+..
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 4678976679877644 578899765
No 178
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.79 E-value=13 Score=26.36 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=18.5
Q ss_pred ccEecccccccc-cCCCCCCCcCCC
Q 020290 114 GHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 114 GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
|..+|..|..++ ...|+.|.+++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 667888888874 468888888775
No 179
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.74 E-value=9.6 Score=26.83 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=14.7
Q ss_pred eeeccccccccccccccccccEecccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCC 123 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~ 123 (328)
|.|..|...|....+.=.+|..+|..|..
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHHhc
Confidence 55666666665432222235566665543
No 180
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.52 E-value=22 Score=22.53 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=21.7
Q ss_pred hhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccC
Q 020290 171 KYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHK 208 (328)
Q Consensus 171 ~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 208 (328)
+..|+.. -.-.++.|+. |+.... ...|..|+...|.
T Consensus 17 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 17 LKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp HHHHHHHTSSCCCEECSS--SSCEESSHHHHHHHHHSSSS
T ss_pred HHHHHHhcCCCCCccCCC--CCchhcCHHHHHHHHHHhcc
Confidence 4455432 2235677865 776553 4678899876554
No 181
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=33.31 E-value=24 Score=28.77 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=61.8
Q ss_pred Ceeee--ccccccccccccccccccEecccccccccCCC--CCCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccc
Q 020290 93 EVLDC--PVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKC--PSCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKM 166 (328)
Q Consensus 93 ~~l~C--piC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~C--P~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~ 166 (328)
..+.| ++|...|......= -|..=. .......| +.|...+....++ .+..-...-.+.|+. ..|...+
T Consensus 11 ~~~~C~~~~C~~~f~~~~~L~--~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f 84 (190)
T 1tf6_A 11 KRYICSFADCGAAYNKNWKLQ--AHLCKH--TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGCDLRF 84 (190)
T ss_dssp CCCBCSSTTTCCBCSSHHHHH--HHHHHH--HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSCCCEE
T ss_pred cceeCCCCCCcchhCCHHHHH--HHHHhc--CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCCCCcc
Confidence 34788 78998887542210 121000 00112478 8898877643222 122222234567762 2588766
Q ss_pred cc-chhhhcc-ccc--ccCCCCCCCCCCccccc-cchHhhhhhhccCCCc
Q 020290 167 SY-SEKYDHG-RAC--HYTPCSCPLAACNFVGS-FHQIYQHFRGVHKHAA 211 (328)
Q Consensus 167 ~~-~~~~~He-~~C--~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~~ 211 (328)
.. ..|..|. ..- .-.++.|+...|+.... ...|..|+...+....
T Consensus 85 ~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~ 134 (190)
T 1tf6_A 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134 (190)
T ss_dssp SCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS
T ss_pred CCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC
Confidence 54 4567887 322 24567885556987664 4679999887555433
No 182
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=33.29 E-value=33 Score=18.46 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=16.3
Q ss_pred CCCCCCCCCccccc-cchHhhhhhh
Q 020290 182 PCSCPLAACNFVGS-FHQIYQHFRG 205 (328)
Q Consensus 182 ~~~CP~~gC~~~g~-~~~L~~Hl~~ 205 (328)
|+.|+...|+.... ...|..|+..
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred CcCCcCCCCCcccCCHhHHHHHHHH
Confidence 56786446886654 3578889765
No 183
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.08 E-value=37 Score=18.33 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=17.0
Q ss_pred CCCCCCCCCCcccc-ccchHhhhhhhc
Q 020290 181 TPCSCPLAACNFVG-SFHQIYQHFRGV 206 (328)
Q Consensus 181 ~~~~CP~~gC~~~g-~~~~L~~Hl~~~ 206 (328)
+|+.|+...|+... ....|..|+...
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence 35678644687655 346788998653
No 184
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.88 E-value=23 Score=25.82 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=33.6
Q ss_pred eecccCCCCCCccccc-chhhhccc-ccccCCCCCCCCCCcccc-ccchHhhhhhhccCC
Q 020290 153 VACENADYGCKEKMSY-SEKYDHGR-ACHYTPCSCPLAACNFVG-SFHQIYQHFRGVHKH 209 (328)
Q Consensus 153 v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~~ 209 (328)
..|+. |...+.. ..|..|++ .=.-+|+.|+. |+... ....|..|++..|..
T Consensus 29 h~C~~----Cgk~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 29 HLCPV----CGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp EECTT----SCCEESSHHHHHHHHHTTSCSSSEECTT--SSCEESSHHHHHHHHHTTCTT
T ss_pred EECCC----CCCCcCcHHHHhhhhhhccCCCccCCCC--CCCEeCCHHHHHHhCcccCcC
Confidence 34654 6666554 34667764 23446788975 88765 446799999888864
No 185
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.83 E-value=22 Score=24.23 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=26.0
Q ss_pred CCCccccc-chhhhccc-cc-ccCCCCCCCCCCccccc-cchHhhhhhhccC
Q 020290 161 GCKEKMSY-SEKYDHGR-AC-HYTPCSCPLAACNFVGS-FHQIYQHFRGVHK 208 (328)
Q Consensus 161 GC~~~~~~-~~~~~He~-~C-~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 208 (328)
+|...+.. ..|..|+. .- .-.++.|+.++|+.... ...|..|+...+.
T Consensus 14 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence 46555443 33455554 22 23566776656776543 3567778765443
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=32.66 E-value=11 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=21.4
Q ss_pred CCeeeeccccccccccccccccccEec-cccccc
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVC-HRCCCD 124 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C-~~C~~~ 124 (328)
++=|.|..|..+|..-.+.=.+|..+| ..|..+
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 455778888888765433223477888 777654
No 187
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.05 E-value=12 Score=26.19 Aligned_cols=33 Identities=15% Similarity=0.359 Sum_probs=20.3
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|..+|..--+.-.+|..+|..|..++
T Consensus 38 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp TTCCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred ccCeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 346777777777653332234777777777654
No 188
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.45 E-value=18 Score=25.67 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=18.6
Q ss_pred CCeeeeccccccccccccccccccEecccccc
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCC 123 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~ 123 (328)
.+.|.||+|...|..-. ..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDK---SKDELICKGDRL 34 (68)
T ss_dssp EEECBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred hhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 45789999999876422 125566665543
No 189
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.44 E-value=16 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=21.7
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+-|.|..|..+|..-.| =.+|..+|..|..++
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 44778888887775434 225778888887765
No 190
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=30.74 E-value=34 Score=23.68 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=25.9
Q ss_pred eeecccCCCCCCccccc-chhhhccc-ccccCCCCCCCCCCccccc-cchHhhhhhh
Q 020290 152 QVACENADYGCKEKMSY-SEKYDHGR-ACHYTPCSCPLAACNFVGS-FHQIYQHFRG 205 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~ 205 (328)
...|+. ..|...+.. ..+..|.. .-.-.++.|+. |+.... ...|..|+..
T Consensus 35 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~ 87 (89)
T 2wbs_A 35 PYHCDW--DGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKR 87 (89)
T ss_dssp CEECCS--TTTCCEESSHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHHHHGGG
T ss_pred CcCCCC--CCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCcccCCHHHHHHHHHh
Confidence 355642 246665543 34556653 22334567764 665443 3567777653
No 191
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.52 E-value=16 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=21.7
Q ss_pred eeeeccccccccccccccccccEecccccccc-cCCCC
Q 020290 94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCP 130 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP 130 (328)
=|.|..|...|..-.+.=.+|.++|..|..++ ..+|-
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 36677777777653332334677777777664 34443
No 192
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=30.50 E-value=12 Score=31.61 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCeeeeccccccccccccccccccEecccccccc-cCCCCCCCcC
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLP 135 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~ 135 (328)
++=|.|..|..+|....+.-.+|..+|..|..++ ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 4558999999999875454456999999999886 4677777643
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.61 E-value=17 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=23.5
Q ss_pred CCeeeecccccccc-ccccccccccEecccccccc
Q 020290 92 PEVLDCPVCYEPLN-IPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 92 ~~~l~CpiC~~~l~-~Pv~qC~~GH~~C~~C~~~~ 125 (328)
++-|.|..|..+|. ...+.=.+|.++|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 44588999999887 33332224788999998765
No 194
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.61 E-value=24 Score=21.78 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.9
Q ss_pred cCCCCCCCCCCcccccc-chHhhhhhh
Q 020290 180 YTPCSCPLAACNFVGSF-HQIYQHFRG 205 (328)
Q Consensus 180 ~~~~~CP~~gC~~~g~~-~~L~~Hl~~ 205 (328)
-.++.|++..|+..... ..|..|+..
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence 35678865568866544 678889765
No 195
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=29.53 E-value=20 Score=23.53 Aligned_cols=25 Identities=28% Similarity=0.737 Sum_probs=17.5
Q ss_pred CeeeeccccccccccccccccccEeccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
|...|+-|. -+.+|. +.+|..|+.-
T Consensus 12 D~WkC~~C~-~~N~Pl------~r~C~rCw~L 36 (46)
T 2c6a_A 12 DYWKCTSCN-EMNPPL------PSHCNRCWAL 36 (46)
T ss_dssp GCEECTTTC-CEECSS------CSSCTTTCCC
T ss_pred ceEeccccc-ccCCCc------cchhhHHHhh
Confidence 678999999 466663 4556677653
No 196
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.46 E-value=25 Score=23.86 Aligned_cols=28 Identities=32% Similarity=0.753 Sum_probs=19.0
Q ss_pred CCCeeeeccccccccccccccccccEecc--cccc
Q 020290 91 DPEVLDCPVCYEPLNIPVYQCGNGHVVCH--RCCC 123 (328)
Q Consensus 91 ~~~~l~CpiC~~~l~~Pv~qC~~GH~~C~--~C~~ 123 (328)
..+.|.||+|...|..-. |..+|. .|..
T Consensus 7 lL~iL~CP~c~~~L~~~~-----~~L~C~~~~c~~ 36 (56)
T 2kpi_A 7 LLEILACPACHAPLEERD-----AELICTGQDCGL 36 (56)
T ss_dssp CTTSCCCSSSCSCEEEET-----TEEEECSSSCCC
T ss_pred HHhheeCCCCCCcceecC-----CEEEcCCcCCCc
Confidence 456789999999876421 666666 5643
No 197
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.30 E-value=21 Score=25.16 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=19.8
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|..+|....+.=.+|..+|..|..++
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 346777777777653332234677777776654
No 198
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.06 E-value=20 Score=20.97 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=7.9
Q ss_pred eeeeccccccccc
Q 020290 94 VLDCPVCYEPLNI 106 (328)
Q Consensus 94 ~l~CpiC~~~l~~ 106 (328)
++.||+|...+-+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4567777665544
No 199
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.02 E-value=19 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.638 Sum_probs=18.5
Q ss_pred CCeeeeccccccccccccccccccEecccccc
Q 020290 92 PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCC 123 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~ 123 (328)
.+.|.||+|...|.--. ..|-.+|..|..
T Consensus 6 LeiL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (69)
T 2pk7_A 6 LDILACPICKGPLKLSA---DKTELISKGAGL 34 (69)
T ss_dssp GGTCCCTTTCCCCEECT---TSSEEEETTTTE
T ss_pred HhheeCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 45789999999886421 125566665543
No 200
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.89 E-value=32 Score=23.40 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=26.4
Q ss_pred CCcccc-cchhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccCC
Q 020290 162 CKEKMS-YSEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHKH 209 (328)
Q Consensus 162 C~~~~~-~~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~ 209 (328)
|...+. ...|..|+.. -.-.++.|+. |+.... ...|..|+...+..
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~ 72 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRVHTGS 72 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS--SCCEESSHHHHHHHGGGSCCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC--CCCccCCHHHHHHHHHHhCCC
Confidence 554443 2345556542 2235678875 776553 46789998765443
No 201
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=28.88 E-value=21 Score=26.40 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCC--CCCcCCCCCcch--hhHHhhhceeeecccCCCCCCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHh
Q 020290 128 KCP--SCRLPNGHSRST--AMEKVIESIQVACENADYGCKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIY 200 (328)
Q Consensus 128 ~CP--~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~ 200 (328)
.|+ .|...+.....+ .+..-...-...|+. |...+.. ..|..|+.. -.-.++.|+.+.|+.... ...|.
T Consensus 38 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~ 113 (119)
T 2jp9_A 38 QCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113 (119)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHH
T ss_pred cCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHH
Confidence 566 576555432111 122222334466764 7665543 345566542 223456674334765543 35677
Q ss_pred hhhh
Q 020290 201 QHFR 204 (328)
Q Consensus 201 ~Hl~ 204 (328)
.|+.
T Consensus 114 ~H~~ 117 (119)
T 2jp9_A 114 RHHN 117 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 202
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.84 E-value=24 Score=25.24 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=21.6
Q ss_pred eeeecccccccccccccc--ccccEecccccccc
Q 020290 94 VLDCPVCYEPLNIPVYQC--GNGHVVCHRCCCDL 125 (328)
Q Consensus 94 ~l~CpiC~~~l~~Pv~qC--~~GH~~C~~C~~~~ 125 (328)
=|.|..|...|..-.+.. .+|.++|..|..++
T Consensus 42 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 42 CFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp TCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred cCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 477888888776544422 35778888887764
No 203
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.81 E-value=17 Score=25.77 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=16.9
Q ss_pred ccEecccccccccCCCCCCCcCCC
Q 020290 114 GHVVCHRCCCDLMNKCPSCRLPNG 137 (328)
Q Consensus 114 GH~~C~~C~~~~~~~CP~C~~~~~ 137 (328)
|..+|..|.......|+.|.++|.
T Consensus 3 g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 3 SGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred CCEECHHHhhcCCCccccCCCeec
Confidence 567788887744467888877765
No 204
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.71 E-value=40 Score=31.61 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCeeeeccccccccccc---cccc-cccEecccccccccCCCCC
Q 020290 90 NDPEVLDCPVCYEPLNIPV---YQCG-NGHVVCHRCCCDLMNKCPS 131 (328)
Q Consensus 90 ~~~~~l~CpiC~~~l~~Pv---~qC~-~GH~~C~~C~~~~~~~CP~ 131 (328)
.+...-.|..|...|..-. ++|. +|.++|..|..++. .|+.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~ 397 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGR 397 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC--
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCC
Confidence 3445568999999986422 2465 49999999999875 3543
No 205
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.59 E-value=12 Score=35.50 Aligned_cols=38 Identities=21% Similarity=0.563 Sum_probs=0.0
Q ss_pred eecCCCCeeeecccccccccccc--ccc-cccEeccccccc
Q 020290 87 VTLNDPEVLDCPVCYEPLNIPVY--QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 87 ~~~~~~~~l~CpiC~~~l~~Pv~--qC~-~GH~~C~~C~~~ 124 (328)
..+.+.+.-.|.+|...|..-.. .|. +|++||..|...
T Consensus 368 ~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 368 TLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp -----------------------------------------
T ss_pred cCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 34445556789999998863221 343 399999999764
No 206
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=28.30 E-value=17 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.549 Sum_probs=21.4
Q ss_pred ccccchhhhcccccccCCCCCCCCCCcccc
Q 020290 165 KMSYSEKYDHGRACHYTPCSCPLAACNFVG 194 (328)
Q Consensus 165 ~~~~~~~~~He~~C~~~~~~CP~~gC~~~g 194 (328)
.+....++.|...|+|+.|.|. .|....
T Consensus 16 HG~~~~lKGHKr~C~~r~C~C~--kC~li~ 43 (52)
T 1lpv_A 16 HGLKITLKGHKRYCKFRYCTCE--KCRLTA 43 (52)
T ss_dssp TTCCCTTTTCGGGCTTTTCCSH--HHHHHH
T ss_pred CCCccccCCccCccCCCCCcCC--CCcCcH
Confidence 3445678999999999999995 476543
No 207
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=27.37 E-value=43 Score=28.36 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=26.1
Q ss_pred eecccccccccc-----ccccc-cccEecccccccc--------------cCCCCCCCcCCC
Q 020290 96 DCPVCYEPLNIP-----VYQCG-NGHVVCHRCCCDL--------------MNKCPSCRLPNG 137 (328)
Q Consensus 96 ~CpiC~~~l~~P-----v~qC~-~GH~~C~~C~~~~--------------~~~CP~C~~~~~ 137 (328)
.||||..+..+. +.+|. +...|=..|..-. ...||.|+....
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 599999997654 44764 2444444454321 258999987644
No 208
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=26.82 E-value=18 Score=26.58 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred eeecccCCCCCCcccccchhhhcccccccC-CCCCCCCCCccccccchHhhhh
Q 020290 152 QVACENADYGCKEKMSYSEKYDHGRACHYT-PCSCPLAACNFVGSFHQIYQHF 203 (328)
Q Consensus 152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~-~~~CP~~gC~~~g~~~~L~~Hl 203 (328)
.+.|- +|...++-..+..|...|.-. .+.| ..|+......+...|.
T Consensus 10 ~F~C~----~Cgd~lKK~kv~~H~~~Cr~~~~~SC--IDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 10 FFTCN----ACGESVKKIQVEKHVSNCRNCECLSC--IDCGKDFWGDDYKSHV 56 (79)
T ss_dssp EEEES----SSCCEEETTHHHHHHHHCTTCCEEEE--TTTTEEEEGGGTTTCC
T ss_pred EEEcC----CCCCeeecccchhHHhhCCCCCcEEe--cccCCeeCCCCEeCEe
Confidence 35574 599999999999998889864 6788 4688777777888874
No 209
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=26.02 E-value=40 Score=25.43 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=36.1
Q ss_pred ceeeecccCCCCCCccccc-chhhhcccccccCCCCCCCCCCcccccc-chHhhhhhhccCCC
Q 020290 150 SIQVACENADYGCKEKMSY-SEKYDHGRACHYTPCSCPLAACNFVGSF-HQIYQHFRGVHKHA 210 (328)
Q Consensus 150 ~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~gC~~~g~~-~~L~~Hl~~~H~~~ 210 (328)
.-...|+. |...+.. ..|..|+..= -.++.|+. |+..... ..|..|+...|.+.
T Consensus 72 ~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~~ 127 (129)
T 2wbt_A 72 ISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV--CKKEFTSTDSALDHVCKKHNIC 127 (129)
T ss_dssp HCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT--TCCBCSSHHHHHHHHHHTTCCC
T ss_pred CCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC--CCcccCCHHHHHHHHHHHCCcc
Confidence 34566765 7766554 3466776532 46788975 8766544 67999999888764
No 210
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=25.59 E-value=37 Score=27.60 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=8.9
Q ss_pred eeee--ccccccccc
Q 020290 94 VLDC--PVCYEPLNI 106 (328)
Q Consensus 94 ~l~C--piC~~~l~~ 106 (328)
.+.| ++|...|..
T Consensus 42 ~~~C~~~~C~~~f~~ 56 (190)
T 1tf6_A 42 PFPCKEEGCEKGFTS 56 (190)
T ss_dssp SSCCSSTTCCCCCSS
T ss_pred CccCCCCCCChhhCC
Confidence 3677 778777754
No 211
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.08 E-value=28 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=15.4
Q ss_pred ccEecccccccc-cCCCCCCCcCCC
Q 020290 114 GHVVCHRCCCDL-MNKCPSCRLPNG 137 (328)
Q Consensus 114 GH~~C~~C~~~~-~~~CP~C~~~~~ 137 (328)
+..+|..|..++ ...|..|.+++.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC
Confidence 345677777664 356777777665
No 212
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.96 E-value=23 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCeeeeccccccccc--cccccccccEecccccccc-cCCCCCCC
Q 020290 92 PEVLDCPVCYEPLNI--PVYQCGNGHVVCHRCCCDL-MNKCPSCR 133 (328)
Q Consensus 92 ~~~l~CpiC~~~l~~--Pv~qC~~GH~~C~~C~~~~-~~~CP~C~ 133 (328)
++-|.|..|..+|.. ..+.-.+|..+|..|..++ ..+|-.|.
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 345889999999874 2343345889999998875 45665553
No 213
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.87 E-value=16 Score=24.97 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=11.5
Q ss_pred eeeccccccccccccccccccEeccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCC 122 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~ 122 (328)
|.|..|...|..-.+.=..|..+|..|.
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHHH
Confidence 4455555554432221112444554443
No 214
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.56 E-value=46 Score=23.58 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=30.8
Q ss_pred eeeccccccccccc---cccccccEecccccccccCCCCCCCcCC
Q 020290 95 LDCPVCYEPLNIPV---YQCGNGHVVCHRCCCDLMNKCPSCRLPN 136 (328)
Q Consensus 95 l~CpiC~~~l~~Pv---~qC~~GH~~C~~C~~~~~~~CP~C~~~~ 136 (328)
-.|..|..-+.-+- +.|.+|.+||..=...-...|+..-+..
T Consensus 16 ~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~ 60 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR 60 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCS
T ss_pred CcchhhCCeecccccCceEecCCCEehhccCCccccCCccccccc
Confidence 47999999988763 6777799999877654445677665443
No 215
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.96 E-value=39 Score=27.82 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=20.6
Q ss_pred eeeccccccccc--ccc-ccc-cccEeccccccc
Q 020290 95 LDCPVCYEPLNI--PVY-QCG-NGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~--Pv~-qC~-~GH~~C~~C~~~ 124 (328)
-.|.+|..+|.- ... .|. +.|.+|..|-..
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~ 102 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA 102 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhcccccc
Confidence 479999998742 212 443 388999998743
No 216
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.19 E-value=15 Score=26.12 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=16.0
Q ss_pred eeeccccccccccccccccccEeccccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
|.|..|...|..-.+.=.+|..+|..|..+
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 71 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 566666666654222222366666666554
No 217
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.18 E-value=42 Score=27.98 Aligned_cols=13 Identities=31% Similarity=0.628 Sum_probs=9.1
Q ss_pred Ceeeecccccccc
Q 020290 93 EVLDCPVCYEPLN 105 (328)
Q Consensus 93 ~~l~CpiC~~~l~ 105 (328)
..+.|++|..+..
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4577888877664
No 218
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.43 E-value=21 Score=25.86 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=13.5
Q ss_pred eeeccccccccccccccccccEeccccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
|.|..|...|..-.+.=.+|..+|..|..+
T Consensus 52 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 81 (89)
T 1x64_A 52 FVCADCNLNLKQKGYFFVEGELYCETHARA 81 (89)
T ss_dssp CCCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred CEecCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 455555555543222111355555555543
No 219
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.25 E-value=98 Score=22.39 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=28.3
Q ss_pred CccccCCCCCeeeecCCCCeeeeccccccccccc---cccc-cccEecccccccc
Q 020290 75 DLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPV---YQCG-NGHVVCHRCCCDL 125 (328)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~CpiC~~~l~~Pv---~qC~-~GH~~C~~C~~~~ 125 (328)
++++..+.+..+... ....-.|..|...|---. ..|. +-|.+|..|....
T Consensus 7 eL~elrrkgak~~s~-~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 7 GLLEIKRKGAKRGSQ-HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCCCCCCCSCSCCT-TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred HHHHHHHccccCcCc-CCCccchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 344445444444322 233467999999985311 1333 2788888887543
No 220
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=21 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=16.7
Q ss_pred eeeccccccccccccccccccEecccccccc
Q 020290 95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
|.|..|..+|..-.+.=.+|.++|..|..++
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 5666666666543221224666666666543
No 221
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.06 E-value=55 Score=16.81 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=16.3
Q ss_pred CCCCCCCCCcccc-ccchHhhhhhhccC
Q 020290 182 PCSCPLAACNFVG-SFHQIYQHFRGVHK 208 (328)
Q Consensus 182 ~~~CP~~gC~~~g-~~~~L~~Hl~~~H~ 208 (328)
++.|+. |+... ....|..|+...|.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY--CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS--SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC--CCCccCCHHHHHHHHHHHcc
Confidence 567764 76554 34678899876554
No 222
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=20.68 E-value=49 Score=25.76 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=24.6
Q ss_pred CeeeeccccccccccccccccccEeccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCD 124 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~ 124 (328)
+...|--|..++.++.....-+..+|..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999999888776666677888888754
No 223
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.52 E-value=35 Score=24.27 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=18.5
Q ss_pred CeeeeccccccccccccccccccEecccccccc
Q 020290 93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL 125 (328)
Q Consensus 93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~ 125 (328)
+=|.|..|...|.. .+.=.+|..+|..|..++
T Consensus 41 ~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 41 SCFKCQTCSVILTG-EYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp TTCBCSSSCCBCSS-CCEEETTEEECTTHHHHH
T ss_pred ccCCcCcCCCCcCC-CeEEECCEEECHHHHHHH
Confidence 34667777776654 232224667777776653
No 224
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.18 E-value=46 Score=22.35 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCccccc-chhhhcccc-cccCCCCCCCCCCccccc-cchHhhhhhhccC
Q 020290 162 CKEKMSY-SEKYDHGRA-CHYTPCSCPLAACNFVGS-FHQIYQHFRGVHK 208 (328)
Q Consensus 162 C~~~~~~-~~~~~He~~-C~~~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~ 208 (328)
|...+.. ..|..|+.. -.-.++.|+. |+.... ...|..|+...+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT--TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC--CCchhCCHHHHHHHHHhcCC
Confidence 5544432 234455432 2235678865 876553 4678899876443
No 225
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.18 E-value=46 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=19.9
Q ss_pred eeecccccccc--cc-ccccc-cccEecccccccc
Q 020290 95 LDCPVCYEPLN--IP-VYQCG-NGHVVCHRCCCDL 125 (328)
Q Consensus 95 l~CpiC~~~l~--~P-v~qC~-~GH~~C~~C~~~~ 125 (328)
-.|.+|...|. .. -..|. +.|.+|..|-...
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 47999999984 11 11332 3788888887654
Done!