Query 020291
Match_columns 328
No_of_seqs 208 out of 649
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.1E-31 1E-35 207.5 3.1 65 136-203 10-74 (76)
2 1wj2_A Probable WRKY transcrip 100.0 4E-31 1.4E-35 207.7 2.7 64 137-203 14-77 (78)
3 2rpr_A Flywch-type zinc finger 57.9 3.1 0.00011 31.8 1.0 52 139-203 23-74 (87)
4 1cz6_A Protein (androctonin); 43.0 6.2 0.00021 24.2 0.4 8 162-169 16-23 (26)
5 3c9p_A Uncharacterized protein 29.2 16 0.00055 30.5 0.9 20 22-41 100-119 (123)
6 3l1n_A MP1P, cell WALL antigen 20.1 1.6E+02 0.0055 25.9 5.7 49 23-75 145-193 (194)
7 1k8k_G P16, ARP2/3 complex 16 19.8 91 0.0031 26.8 3.8 52 20-71 37-88 (151)
8 1nvp_D Transcription initiatio 14.0 1.4E+02 0.0047 24.2 3.4 39 29-77 9-48 (108)
9 1nh2_D Transcription initiatio 13.4 1.4E+02 0.0049 24.7 3.4 40 28-77 12-52 (121)
10 3dwl_G Actin-related protein 2 12.2 1.3E+02 0.0043 26.0 2.7 50 22-71 40-89 (152)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=3.1e-31 Score=207.51 Aligned_cols=65 Identities=38% Similarity=0.790 Sum_probs=61.3
Q ss_pred ccccCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291 136 SSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL 203 (328)
Q Consensus 136 t~~~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~ 203 (328)
...+++|||.|||||||.|+|++|||+|||||+ +||+|+|+|||+.+||.++.|||+|+|||..+
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 345789999999999999999999999999998 79999999999999999999999999999865
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=4e-31 Score=207.69 Aligned_cols=64 Identities=44% Similarity=0.852 Sum_probs=60.8
Q ss_pred cccCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291 137 STLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL 203 (328)
Q Consensus 137 ~~~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~ 203 (328)
..+++|||.|||||||.|+|++|||+|||||+ +||+|+|+|||+.+||.++.|||+|+|||..+
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 35689999999999999999999999999999 89999999999999999999999999999864
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=57.94 E-value=3.1 Score=31.81 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=34.1
Q ss_pred cCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291 139 LTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL 203 (328)
Q Consensus 139 ~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~ 203 (328)
+.-|||.-.+--+ ...+.|.||+.....+|.|+-.... ++ +.-.+.|+|.+.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCc
Confidence 4678887765321 1236899999877779999754432 11 335688999653
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=42.97 E-value=6.2 Score=24.21 Aligned_cols=8 Identities=38% Similarity=1.319 Sum_probs=7.0
Q ss_pred ccccccCC
Q 020291 162 NYFRCTHK 169 (328)
Q Consensus 162 sYyrCt~~ 169 (328)
.||+||++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999986
No 5
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=29.23 E-value=16 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 020291 22 RRAIEELIKGQEMALQLRNL 41 (328)
Q Consensus 22 ~~vi~EL~rGrelA~QL~~l 41 (328)
.++|+||++|+.+.+-||..
T Consensus 100 DKLVDELAKGK~MeKILR~~ 119 (123)
T 3c9p_A 100 DKLVDWLAKGKTSQQVLEKY 119 (123)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHccCcHHHHHHhh
Confidence 48999999999999888864
No 6
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex, lipid binding PROT; HET: PLM; 1.30A {Penicillium marneffei}
Probab=20.12 E-value=1.6e+02 Score=25.85 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHhHHHHHHH
Q 020291 23 RAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSI 75 (328)
Q Consensus 23 ~vi~EL~rGrelA~QL~~lL~~~~~~~~~~~a~~~a~~Lv~~IL~Sfs~aLsi 75 (328)
.|..-|.+.+..+.+|-..|..-.+.. ....|+.|..+|...|.++|..
T Consensus 145 ~V~~~L~~qk~as~~Ls~AvvsKVP~~----~~~iA~~l~~~I~~a~~~aI~a 193 (194)
T 3l1n_A 145 KVENNLRQQEEAAQKLSELVSTKVPHE----LADISRQLSDGIAAGIKKGIDA 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGG----GHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777788888877775432222 2678999999999999999864
No 7
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=19.82 E-value=91 Score=26.82 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHhHHH
Q 020291 20 DRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTN 71 (328)
Q Consensus 20 ~~~~vi~EL~rGrelA~QL~~lL~~~~~~~~~~~a~~~a~~Lv~~IL~Sfs~ 71 (328)
.+..-|+-|+++-..+.-|+..|..+|-......+-..+..+|-+||.++..
T Consensus 37 p~~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~siK~ 88 (151)
T 1k8k_G 37 PDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKA 88 (151)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHccH
Confidence 3467788888888999999999987754332212335566788888888853
No 8
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=13.98 E-value=1.4e+02 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHhHHHHHHH-Hc
Q 020291 29 IKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSI-LK 77 (328)
Q Consensus 29 ~rGrelA~QL~~lL~~~~~~~~~~~a~~~a~~Lv~~IL~Sfs~aLsi-L~ 77 (328)
.=|..|..-|.+++.... ...+|+.+||.-|++++.. |.
T Consensus 9 tiG~aL~dtLdEli~~~~----------Isp~la~kVL~~FDksi~~aL~ 48 (108)
T 1nvp_D 9 TLGNSLQESLDELIQSQQ----------ITPQLALQVLLQFDKAINAALA 48 (108)
T ss_dssp HHHHHHHHHHHHHHHTTS----------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 348889999999886431 2247899999999999985 44
No 9
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=13.44 E-value=1.4e+02 Score=24.69 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHhHHHHHHH-Hc
Q 020291 28 LIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSI-LK 77 (328)
Q Consensus 28 L~rGrelA~QL~~lL~~~~~~~~~~~a~~~a~~Lv~~IL~Sfs~aLsi-L~ 77 (328)
..=|..|..-|.+++... ....+|+.+||.-|++++.. |.
T Consensus 12 StiG~aL~dtLdEli~~~----------~Isp~la~kVL~~FDksi~~aL~ 52 (121)
T 1nh2_D 12 STIGNSLVDALDTLISDG----------RIEASLAMRVLETFDKVVAETLK 52 (121)
T ss_dssp SHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999988643 12247899999999999985 54
No 10
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=12.19 E-value=1.3e+02 Score=25.97 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhHHHHHHHHHHHhHHH
Q 020291 22 RRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTN 71 (328)
Q Consensus 22 ~~vi~EL~rGrelA~QL~~lL~~~~~~~~~~~a~~~a~~Lv~~IL~Sfs~ 71 (328)
..-|+-|+++-..+.-|+..|..+|-......+-..+..+|-+||.++..
T Consensus 40 ~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~siK~ 89 (152)
T 3dwl_G 40 IPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRA 89 (152)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHccH
Confidence 45677788888899999999987654322122335566788888888753
Done!