BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020292
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FMW|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Rna
           (Guanine-9- ) Methyltransferase Domain Containing
           Protein 2
 pdb|4FMW|B Chain B, Crystal Structure Of Methyltransferase Domain Of Human Rna
           (Guanine-9- ) Methyltransferase Domain Containing
           Protein 2
          Length = 197

 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 4/176 (2%)

Query: 117 IIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQL-QRLPGFD 175
           +IID  F HL    +I+ L +QI  CYA NR+   P   +LT   G ++    +   G+ 
Sbjct: 23  LIIDCSFDHLXVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNXDENDKGWV 82

Query: 176 KWI-IEKENRSYIEALEDHKENLVYLTADSDTVLDDLDPNKIYIVGGLVDRNRWKGITMK 234
            W  I  +   Y E ++  KE+L+YLT+DS  +L +LD +K Y++GGLVD N  KG+T K
Sbjct: 83  NWKDIHIKPEHYSELIK--KEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYK 140

Query: 235 KAQEQGLQTGKLPIGNYLKMSSSQVLTVNQVLEILLKFLETRDWEASFFQVIPQRK 290
           +A + G+   +LP+GN++K +S +VL VN V EI+L++LETRDW+ +FF ++PQRK
Sbjct: 141 QASDYGINHAQLPLGNFVKXNSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRK 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,347,711
Number of Sequences: 62578
Number of extensions: 275122
Number of successful extensions: 542
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)