Query 020292
Match_columns 328
No_of_seqs 184 out of 444
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmw_A RNA (guanine-9-)-methyl 100.0 1.8E-68 6.1E-73 483.3 14.1 181 109-291 15-197 (197)
2 2qmm_A UPF0217 protein AF_1056 60.6 9 0.00031 34.0 4.6 83 179-274 107-193 (197)
3 3aia_A UPF0217 protein MJ1640; 48.7 13 0.00046 33.3 3.7 82 179-274 118-204 (211)
4 3tdg_A DSBG, putative uncharac 24.3 2.8 9.6E-05 39.1 -5.2 60 196-255 75-140 (273)
5 4dgh_A Sulfate permease family 21.1 2.9E+02 0.0098 21.3 7.1 53 113-171 48-100 (130)
6 1lm7_A Subdomain of desmoplaki 18.5 38 0.0013 30.8 1.3 27 219-245 166-192 (248)
7 2d8m_A DNA-repair protein XRCC 14.9 2.7E+02 0.0093 21.9 5.5 26 211-241 56-81 (129)
8 1lm5_A Subdomain of desmoplaki 14.8 52 0.0018 29.2 1.2 23 219-241 49-71 (214)
9 4hyl_A Stage II sporulation pr 14.3 2.3E+02 0.0078 21.2 4.7 57 113-176 41-97 (117)
10 3llo_A Prestin; STAS domain, c 13.9 4.1E+02 0.014 20.6 6.3 55 114-175 64-118 (143)
No 1
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-68 Score=483.28 Aligned_cols=181 Identities=43% Similarity=0.812 Sum_probs=169.2
Q ss_pred HhhhcCCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcC-CCCCccc-eecccchh
Q 020292 109 KAKENGQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRL-PGFDKWI-IEKENRSY 186 (328)
Q Consensus 109 ~a~~~~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~-~g~~~w~-v~~~~~~~ 186 (328)
.+++++++|||||||+++|+++|+.||++||++|||+||++.+|++|+|||+++.+.+.|.++ .||.+|. +++++++|
T Consensus 15 ~~~~~~~riviD~sf~~~M~~kE~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (197)
T 4fmw_A 15 DVVHSTLRLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHY 94 (197)
T ss_dssp CCCCCSCEEEEECTTGGGSCHHHHHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHHHHHHHHCGGGGTCSSCEECSSCH
T ss_pred hhCCCCCEEEEECCchHhcCHHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHHHHHHHhhccCccccceeecCccH
Confidence 355689999999999999999999999999999999999999999999999999999998764 5888885 88999999
Q ss_pred hhhhhccCCcEEEecCCCccccCcCCCCceEEEeeeecCCCChhhHHHHHHHcCCcccccccccccccCCCcccchHHHH
Q 020292 187 IEALEDHKENLVYLTADSDTVLDDLDPNKIYIVGGLVDRNRWKGITMKKAQEQGLQTGKLPIGNYLKMSSSQVLTVNQVL 266 (328)
Q Consensus 187 ~e~f~~~~~~iVYLSpDS~~~L~eld~~~vYIIGGiVDrnr~Kglt~~kA~~~GI~taRLPI~eyi~l~~~~VLtiN~V~ 266 (328)
+++|+ +++||||||||+++|++++|++|||||||||||++||+|+++|+++||+||||||++||+|.+++||||||||
T Consensus 95 ~~~f~--~~~iVYLtpDs~~~L~~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i~~~~~kvLtiN~V~ 172 (197)
T 4fmw_A 95 SELIK--KEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMNSRKVLAVNHVF 172 (197)
T ss_dssp HHHSC--GGGEEEECTTCSCBCCSCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC----CCCCCHHHHH
T ss_pred HHhCC--cccEEEECCCchhhhhccCCCCEEEEEEEEeCCCCcchhHHHHHHcCCCEEeccccceeecCCCccccHHHHH
Confidence 99998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHhcCCCCcc
Q 020292 267 EILLKFLETRDWEASFFQVIPQRKR 291 (328)
Q Consensus 267 eILl~~~e~~DW~~A~~~vIP~RK~ 291 (328)
+||++|+++|||++||.+|||+|||
T Consensus 173 eILl~~~~~~dW~~Al~~viP~RKg 197 (197)
T 4fmw_A 173 EIILEYLETRDWQEAFFTILPQRKG 197 (197)
T ss_dssp HHHHHHHHHCCHHHHHHHHSCCCC-
T ss_pred HHHHHHHhCCCHHHHHHHhCCCCCC
Confidence 9999999999999999999999996
No 2
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=60.59 E-value=9 Score=34.03 Aligned_cols=83 Identities=23% Similarity=0.403 Sum_probs=49.5
Q ss_pred eecccchhhhhhhcc--CCcEEEecCCCccccC-cCCCCceEEEeeeecCCCChhhHHHH-HHHcCCccccccccccccc
Q 020292 179 IEKENRSYIEALEDH--KENLVYLTADSDTVLD-DLDPNKIYIVGGLVDRNRWKGITMKK-AQEQGLQTGKLPIGNYLKM 254 (328)
Q Consensus 179 v~~~~~~~~e~f~~~--~~~iVYLSpDS~~~L~-eld~~~vYIIGGiVDrnr~Kglt~~k-A~~~GI~taRLPI~eyi~l 254 (328)
+.+...++.++.... ...++||+.+....=. ++..+-+||||| |-+.+-+- +.-.++...+ +.+
T Consensus 107 i~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~~~~~~~~fvlGd------H~~f~~e~~~~l~~~~~~~------iSi 174 (197)
T 2qmm_A 107 VYVSRKGLEELIEELSEKYSIIYLKEDGVDISNAQLPPNPLFVIGD------HEGLTEEQEKVVERYAALK------LSL 174 (197)
T ss_dssp EEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGSCCCSSEEEEEEC------TTCCCHHHHHHHHTTCSEE------EEC
T ss_pred EEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchhhcCCCCEEEEeC------CCCCCHHHHHHHHHhcCeE------EEE
Confidence 333444555554421 2469999999875433 344578999999 44555432 1112222222 223
Q ss_pred CCCcccchHHHHHHHHHhhc
Q 020292 255 SSSQVLTVNQVLEILLKFLE 274 (328)
Q Consensus 255 ~~~~VLtiN~V~eILl~~~e 274 (328)
|...|..+||+-++..++.
T Consensus 175 -gp~~L~A~~vi~~vh~~ld 193 (197)
T 2qmm_A 175 -SPLSLLAEQCVVIAHHHLD 193 (197)
T ss_dssp -CSSCCCHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHh
Confidence 4578999999999888764
No 3
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=48.72 E-value=13 Score=33.27 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=49.6
Q ss_pred eecccchhhhhhhcc--CC-cEEEecCCCccccC-cCCCCceEEEeeeecCCCChhhHHHHHHH-cCCcccccccccccc
Q 020292 179 IEKENRSYIEALEDH--KE-NLVYLTADSDTVLD-DLDPNKIYIVGGLVDRNRWKGITMKKAQE-QGLQTGKLPIGNYLK 253 (328)
Q Consensus 179 v~~~~~~~~e~f~~~--~~-~iVYLSpDS~~~L~-eld~~~vYIIGGiVDrnr~Kglt~~kA~~-~GI~taRLPI~eyi~ 253 (328)
+.+...++.+++..- .. .++||+.+....=. ++ .+-+||+|| |-+.+-+--.- .++...+ +.
T Consensus 118 i~v~~~sle~ll~e~~~~~~~v~~L~E~G~~i~~~~~-~~~~fvlGd------H~~f~~e~~~~L~~~~~~~------iS 184 (211)
T 3aia_A 118 IYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDI-ENPVFIIGD------HIGIGEEDERFLDEIKAKR------IS 184 (211)
T ss_dssp EEEECCCHHHHHHHHHHTTCEEEEEEEEEEEGGGCCC-CSEEEEEEC------SSCSCHHHHHHHHHTTCEE------EE
T ss_pred eEEEcCCHHHHHHHHhhcCCcEEEEcCCCCCCccccc-CCcEEEEEC------CCCCCHHHHHHHHhhCCeE------EE
Confidence 334445555554321 23 59999999875432 34 788999999 44555442111 1222222 22
Q ss_pred cCCCcccchHHHHHHHHHhhc
Q 020292 254 MSSSQVLTVNQVLEILLKFLE 274 (328)
Q Consensus 254 l~~~~VLtiN~V~eILl~~~e 274 (328)
+ |...|..+||+-++..++.
T Consensus 185 i-gp~~L~A~hvi~~vh~~LD 204 (211)
T 3aia_A 185 L-SPLELHANHCITIIHNVLD 204 (211)
T ss_dssp C-CSSCCCHHHHHHHHHHHHH
T ss_pred E-CCcchHHHHHHHHHHHHhc
Confidence 2 4578999999999988875
No 4
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=24.32 E-value=2.8 Score=39.11 Aligned_cols=60 Identities=7% Similarity=0.130 Sum_probs=42.4
Q ss_pred cEEEecCCCccccC-----cCCC-CceEEEeeeecCCCChhhHHHHHHHcCCcccccccccccccC
Q 020292 196 NLVYLTADSDTVLD-----DLDP-NKIYIVGGLVDRNRWKGITMKKAQEQGLQTGKLPIGNYLKMS 255 (328)
Q Consensus 196 ~iVYLSpDS~~~L~-----eld~-~~vYIIGGiVDrnr~Kglt~~kA~~~GI~taRLPI~eyi~l~ 255 (328)
-++|.|+|+...+. -+++ ++-.++|-|+|....+++|-.+-.++....+.||....|.+.
T Consensus 75 ~~ly~s~DGk~~I~~~~v~Y~~~~g~y~l~G~L~d~~~~~nlT~~~~~~l~~~~~~l~~~~~I~~~ 140 (273)
T 3tdg_A 75 IPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELP 140 (273)
T ss_dssp EEEEECTTSCCEEECCSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSEEEC
T ss_pred eeEEECCCCCeeeccCcEEEEcCCCCEEEEEeeeccccccChhHHHHHHHHHHHHhCCccccEEEc
Confidence 47999999987664 2344 345556999996655688866554444678899999888753
No 5
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=21.10 E-value=2.9e+02 Score=21.26 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=38.6
Q ss_pred cCCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcC
Q 020292 113 NGQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRL 171 (328)
Q Consensus 113 ~~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~ 171 (328)
.+..|||||+--..|.---+..|..=+..+- ..-..|.|+++++.+...|...
T Consensus 48 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~------~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 48 TPQILILRLKWVPFMDITGIQTLEEMIQSFH------KRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHH------TTTCEEEEECCCHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHHHHH------HCCCEEEEEcCCHHHHHHHHHc
Confidence 3567999999999998776666554433332 2456899999999988888654
No 6
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat, structural protein; 3.00A {Homo sapiens} SCOP: d.211.2.1
Probab=18.46 E-value=38 Score=30.82 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.0
Q ss_pred EeeeecCCCChhhHHHHHHHcCCcccc
Q 020292 219 VGGLVDRNRWKGITMKKAQEQGLQTGK 245 (328)
Q Consensus 219 IGGiVDrnr~Kglt~~kA~~~GI~taR 245 (328)
-|||||......++++.|-+.|+=-..
T Consensus 166 tGGiidp~~g~rl~l~~A~~~Glid~~ 192 (248)
T 1lm7_A 166 TGGIIDPKESHRLPVDIAYKRGYFNEE 192 (248)
T ss_dssp TTSEECTTTCSEECHHHHHHTTSCCHH
T ss_pred cCceecCCcCcccCHHHHHHcCCcCHH
Confidence 499999998888999999999975544
No 7
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.87 E-value=2.7e+02 Score=21.91 Aligned_cols=26 Identities=4% Similarity=-0.073 Sum_probs=17.8
Q ss_pred CCCCceEEEeeeecCCCChhhHHHHHHHcCC
Q 020292 211 LDPNKIYIVGGLVDRNRWKGITMKKAQEQGL 241 (328)
Q Consensus 211 ld~~~vYIIGGiVDrnr~Kglt~~kA~~~GI 241 (328)
+....+|||-| +. .|.-|.+|.+.||
T Consensus 56 ~s~~~ThLI~~--~~---~~~K~~~A~~~gi 81 (129)
T 2d8m_A 56 WTRDSTHLICA--FA---NTPKYSQVLGLGG 81 (129)
T ss_dssp CCTTCCEEEES--SS---SCHHHHHHHHHTC
T ss_pred cCCCCeEEEec--CC---CChHHHHHHHCCC
Confidence 45667888877 22 3566788888775
No 8
>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat,, structural protein; 1.80A {Homo sapiens} SCOP: d.211.2.1
Probab=14.84 E-value=52 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.4
Q ss_pred EeeeecCCCChhhHHHHHHHcCC
Q 020292 219 VGGLVDRNRWKGITMKKAQEQGL 241 (328)
Q Consensus 219 IGGiVDrnr~Kglt~~kA~~~GI 241 (328)
.|||||-...+.++...|.+.||
T Consensus 49 tggiiDP~tg~~lsv~eA~~~Gl 71 (214)
T 1lm5_A 49 TGGIIHPTTGQKLSLQDAVSQGV 71 (214)
T ss_dssp TTSEECTTTCCEECHHHHHHTTS
T ss_pred hCCCcCCCCCCcCCHHHHHHcCC
Confidence 48999988888899999999997
No 9
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=14.30 E-value=2.3e+02 Score=21.21 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=40.1
Q ss_pred cCCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcCCCCCc
Q 020292 113 NGQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRLPGFDK 176 (328)
Q Consensus 113 ~~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~~g~~~ 176 (328)
.++.|||||+--..|.---+.-|..=...+-. ....|.|++.++.+...|... |+..
T Consensus 41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~------~g~~l~l~~~~~~v~~~l~~~-gl~~ 97 (117)
T 4hyl_A 41 AKGKMILDLREVSYMSSAGLRVLLSLYRHTSN------QQGALVLVGVSEEIRDTMEIT-GFWN 97 (117)
T ss_dssp TTCEEEEEEEEEEEECHHHHHHHHHHHHHHHH------TTCEEEEECCCHHHHHHHHHH-TCGG
T ss_pred cCCeEEEECCCCcEEcHHHHHHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHh-Cccc
Confidence 34499999999999998777666543333321 346799999999988877653 4443
No 10
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=13.87 E-value=4.1e+02 Score=20.59 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=39.9
Q ss_pred CCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcCCCCC
Q 020292 114 GQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRLPGFD 175 (328)
Q Consensus 114 ~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~~g~~ 175 (328)
...|||||+--..|.---+..|..=+..+- ..-..|+|+++++.+...|... |+.
T Consensus 64 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~------~~g~~l~l~~~~~~v~~~l~~~-gl~ 118 (143)
T 3llo_A 64 IHTVILDFTQVNFMDSVGVKTLAGIVKEYG------DVGIYVYLAGCSAQVVNDLTSN-RFF 118 (143)
T ss_dssp CSEEEEECTTCCCCCHHHHHHHHHHHHHHH------TTTCEEEEESCCHHHHHHHHHT-TTT
T ss_pred ceEEEEECCCCccccHHHHHHHHHHHHHHH------HCCCEEEEEeCCHHHHHHHHhC-CCe
Confidence 457999999999998777766654333332 2457899999999988888764 443
Done!