Query 020292
Match_columns 328
No_of_seqs 184 out of 444
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0td1 b.40.3.1 (D:1-124) TIM 36.9 11 0.00081 28.4 3.1 28 198-226 61-92 (124)
2 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 32.3 32 0.0024 24.4 5.0 82 153-243 2-87 (89)
3 d2v3ka1 c.116.1.6 (A:25-251) E 30.3 13 0.00097 31.4 2.8 80 179-274 136-222 (227)
4 d1vc1a_ c.13.2.1 (A:) Anti-sig 30.0 78 0.0057 21.9 7.0 55 114-175 44-98 (110)
5 d1uj4a2 d.58.40.1 (A:132-205) 26.3 17 0.0012 25.4 2.3 25 114-138 42-66 (74)
6 d1lm5a_ d.211.2.1 (A:) Desmopl 25.4 16 0.0012 29.5 2.4 24 219-242 42-65 (196)
7 d1v58a2 d.17.3.1 (A:2-61) Thio 25.1 12 0.00089 25.5 1.2 13 196-208 38-50 (60)
8 d1p3da1 c.5.1.1 (A:11-106) UDP 23.7 96 0.007 21.8 6.4 87 150-244 6-95 (96)
9 d1lm5a_ d.211.2.1 (A:) Desmopl 22.1 14 0.001 29.9 1.3 26 219-244 118-143 (196)
10 d1h4xa_ c.13.2.1 (A:) Anti-sig 21.1 94 0.0069 21.6 5.9 59 114-179 41-99 (111)
11 d1miwa2 d.218.1.4 (A:1-139) tR 20.7 9.5 0.00069 29.4 -0.1 11 213-223 19-29 (139)
12 d1nxza2 c.116.1.5 (A:74-247) H 20.4 53 0.0039 25.7 4.6 71 196-281 94-173 (174)
13 d1m0sa2 d.58.40.1 (A:127-198) 20.3 21 0.0015 24.7 1.8 24 113-136 38-61 (72)
No 1
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.92 E-value=11 Score=28.35 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=21.1
Q ss_pred EEecCCCcc----ccCcCCCCceEEEeeeecCC
Q 020292 198 VYLTADSDT----VLDDLDPNKIYIVGGLVDRN 226 (328)
Q Consensus 198 VYLSpDS~~----~L~eld~~~vYIIGGiVDrn 226 (328)
+| ||.++. .+..|.+++.|+|+|-++.+
T Consensus 61 l~-tp~~~~~CG~~~~~l~~g~~YLI~G~~~~g 92 (124)
T d2j0td1 61 VY-TPAMESVCGYFHRSHNRSEEFLIAGKLQDG 92 (124)
T ss_dssp EE-EESCGGGTCCCCCCSCSSCEEEEEEEEETT
T ss_pred EE-ecCccCccCccCcccCCCCeEEEEEEecCC
Confidence 44 555554 56789999999999998854
No 2
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=32.26 E-value=32 Score=24.37 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=44.7
Q ss_pred ceEEEecCCcchHHHHhcC---CCCCccceecccchhhhhhhccCCcE-EEecCCCccccCcCCCCceEEEeeeecCCCC
Q 020292 153 AHLWLTGCKGDMESQLQRL---PGFDKWIIEKENRSYIEALEDHKENL-VYLTADSDTVLDDLDPNKIYIVGGLVDRNRW 228 (328)
Q Consensus 153 ~~L~lt~~~~~l~~~l~~~---~g~~~w~v~~~~~~~~e~f~~~~~~i-VYLSpDS~~~L~eld~~~vYIIGGiVDrnr~ 228 (328)
+++||+|.+|-....|..+ .|+.----+....+..+.+. ..-+ ||+.-|.++. ...++.|++.-|-.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~--~~Gi~i~~gh~~~~i----~~~d~vV~SsAI~~~-- 73 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR--KLGIPIFVPHSADNW----YDPDLVIKTPAVRDD-- 73 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH--HTTCCEESSCCTTSC----CCCSEEEECTTCCTT--
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH--HCCCeEEeeeccccc----CCCCEEEEecCcCCC--
Confidence 4689999998644333221 24321000122223333333 1223 6666555554 345677887766533
Q ss_pred hhhHHHHHHHcCCcc
Q 020292 229 KGITMKKAQEQGLQT 243 (328)
Q Consensus 229 Kglt~~kA~~~GI~t 243 (328)
+.-+..|++.||+.
T Consensus 74 -npel~~A~~~gIpv 87 (89)
T d1j6ua1 74 -NPEIVRARMERVPI 87 (89)
T ss_dssp -CHHHHHHHHTTCCE
T ss_pred -CHHHHHHHHcCCCc
Confidence 67799999999864
No 3
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=30.30 E-value=13 Score=31.36 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred eecccchhhhhhhccCCcEEEecCCCccc-----cCcCCCCc--eEEEeeeecCCCChhhHHHHHHHcCCcccccccccc
Q 020292 179 IEKENRSYIEALEDHKENLVYLTADSDTV-----LDDLDPNK--IYIVGGLVDRNRWKGITMKKAQEQGLQTGKLPIGNY 251 (328)
Q Consensus 179 v~~~~~~~~e~f~~~~~~iVYLSpDS~~~-----L~eld~~~--vYIIGGiVDrnr~Kglt~~kA~~~GI~taRLPI~ey 251 (328)
+.....+..+.++. ...+||||+.++.+ ...+..+. ++||||+-= |- . .+.. . =+++.
T Consensus 136 l~vikn~Itd~lp~-~~k~I~LS~~G~~~~~~~l~~~l~~~~~v~~viG~f~~-----GD-~------~~~~-~-yide~ 200 (227)
T d2v3ka1 136 LKVIKNPITDHLPT-KCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMAR-----GK-D------NFAD-E-YVDEK 200 (227)
T ss_dssp EEEECSCGGGTSCS-SEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSS-----SC-S------CTTT-T-TCSEE
T ss_pred eeeeccccccccCC-CCeEEEECCCCCccCHHHHHHHhccCCCEEEEEeeecC-----CC-c------cccc-c-ccceE
Confidence 33344455666653 56789999999732 22355555 889998721 10 0 0000 0 02233
Q ss_pred cccCCCcccchHHHHHHHHHhhc
Q 020292 252 LKMSSSQVLTVNQVLEILLKFLE 274 (328)
Q Consensus 252 i~l~~~~VLtiN~V~eILl~~~e 274 (328)
+.+ |..+|+.-.|+.=++.-+|
T Consensus 201 ISI-sdypLSa~~v~sri~~~~E 222 (227)
T d2v3ka1 201 VGL-SNYPLSASVACSKFCHGAE 222 (227)
T ss_dssp EBS-CSSCCCHHHHHHHHHHHHH
T ss_pred EEE-eCcchhHHHHHHHHHHHHH
Confidence 444 4677887777766665443
No 4
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=30.02 E-value=78 Score=21.92 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcCCCCC
Q 020292 114 GQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRLPGFD 175 (328)
Q Consensus 114 ~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~~g~~ 175 (328)
...|||||+--+.|.---+..|..-...+-. ...+++|+|.++.+...|... |+.
T Consensus 44 ~~~vvid~~~v~~iDssg~~~l~~~~~~~~~------~~~~l~l~~~~~~v~~~l~~~-gl~ 98 (110)
T d1vc1a_ 44 KKKIVLDLSSVSYMDSAGLGTLVVILKDAKI------NGKEFILSSLKESISRILKLT-HLD 98 (110)
T ss_dssp CSEEEEEEEECCCBCHHHHHHHHHHHHHHHH------TTCEEEEESCCHHHHHHHHHH-TGG
T ss_pred CCEEEEEEECCCccCHHHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHc-CCC
Confidence 3469999999999988777776655444332 335789999999988887654 543
No 5
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Probab=26.25 E-value=17 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=19.3
Q ss_pred CCcEEEecCCCcccCHHHHHHHHHH
Q 020292 114 GQNIIIDLEFSHLMSRAEIQSLVQQ 138 (328)
Q Consensus 114 ~~~IvIDcsf~~lM~~kEi~sL~~Q 138 (328)
.-.+|+||.|.....+.++....++
T Consensus 42 nGN~IlD~~~~~i~dp~~l~~~L~~ 66 (74)
T d1uj4a2 42 GGHLIADCRFGPIGDPLGLHRALLE 66 (74)
T ss_dssp TSCEEEEECCCSCSCHHHHHHHHHT
T ss_pred CCCEEEECCCCCcCCHHHHHHHHHc
Confidence 4689999999988888776655444
No 6
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.42 E-value=16 Score=29.52 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=20.6
Q ss_pred EeeeecCCCChhhHHHHHHHcCCc
Q 020292 219 VGGLVDRNRWKGITMKKAQEQGLQ 242 (328)
Q Consensus 219 IGGiVDrnr~Kglt~~kA~~~GI~ 242 (328)
-|||||-....-+++..|.+.||-
T Consensus 42 tg~iidp~tg~~~sl~eAi~~glI 65 (196)
T d1lm5a_ 42 TGGIIHPTTGQKLSLQDAVSQGVI 65 (196)
T ss_dssp TTSEECTTTCCEECHHHHHHTTSS
T ss_pred cCccccCCCCcEecHHHHHHCCCc
Confidence 489999888888999999999985
No 7
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.09 E-value=12 Score=25.47 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.3
Q ss_pred cEEEecCCCcccc
Q 020292 196 NLVYLTADSDTVL 208 (328)
Q Consensus 196 ~iVYLSpDS~~~L 208 (328)
-.+|||||...+|
T Consensus 38 valYlTpDGkh~i 50 (60)
T d1v58a2 38 VTIYLTPDGKHAI 50 (60)
T ss_dssp EEEEECTTSSCEE
T ss_pred eEEEEcCCCCEEE
Confidence 3699999988654
No 8
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=23.70 E-value=96 Score=21.76 Aligned_cols=87 Identities=8% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCCceEEEecCCcchHHHHhcC---CCCCccceecccchhhhhhhccCCcEEEecCCCccccCcCCCCceEEEeeeecCC
Q 020292 150 PSPAHLWLTGCKGDMESQLQRL---PGFDKWIIEKENRSYIEALEDHKENLVYLTADSDTVLDDLDPNKIYIVGGLVDRN 226 (328)
Q Consensus 150 ~~P~~L~lt~~~~~l~~~l~~~---~g~~~w~v~~~~~~~~e~f~~~~~~iVYLSpDS~~~L~eld~~~vYIIGGiVDrn 226 (328)
...-++||.|.+|-....|..+ .||.----+....+....+.. ..-.||+-.+..+ +. ..++.|++-=|..+
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~-i~---~~d~vV~S~AI~~~ 80 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEH-IE---GASVVVVSSAIKDD 80 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGG-GT---TCSEEEECTTSCTT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-CCCeEEECCcccc-CC---CCCEEEECCCcCCC
Confidence 3456899999988643333221 244210001111222333321 2334666555544 43 44577887766543
Q ss_pred CChhhHHHHHHHcCCccc
Q 020292 227 RWKGITMKKAQEQGLQTG 244 (328)
Q Consensus 227 r~Kglt~~kA~~~GI~ta 244 (328)
+.-+..|++.||++-
T Consensus 81 ---npel~~A~~~gipii 95 (96)
T d1p3da1 81 ---NPELVTSKQKRIPVI 95 (96)
T ss_dssp ---CHHHHHHHHTTCCEE
T ss_pred ---CHHHHHHHHcCCCEE
Confidence 566888999998763
No 9
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.12 E-value=14 Score=29.94 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=21.6
Q ss_pred EeeeecCCCChhhHHHHHHHcCCccc
Q 020292 219 VGGLVDRNRWKGITMKKAQEQGLQTG 244 (328)
Q Consensus 219 IGGiVDrnr~Kglt~~kA~~~GI~ta 244 (328)
-||+||-...+.+++..|-+.|+=-.
T Consensus 118 tggivdp~tg~~l~l~eAi~~GLId~ 143 (196)
T d1lm5a_ 118 TGGLVDPEVHGRISTEEAIRKGFIDG 143 (196)
T ss_dssp TTSCBCGGGSCBCCHHHHHHTTSSCH
T ss_pred cCCeEeCCCCcEecHHHHHHCCCcCH
Confidence 38999988888899999999998443
No 10
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=21.13 E-value=94 Score=21.62 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCcEEEecCCCcccCHHHHHHHHHHHHHHHHhhcCCCCCceEEEecCCcchHHHHhcCCCCCccce
Q 020292 114 GQNIIIDLEFSHLMSRAEIQSLVQQIMYCYAVNRKCPSPAHLWLTGCKGDMESQLQRLPGFDKWII 179 (328)
Q Consensus 114 ~~~IvIDcsf~~lM~~kEi~sL~~Qi~~~Ys~NRr~~~P~~L~lt~~~~~l~~~l~~~~g~~~w~v 179 (328)
...|||||+--+.|.---+..|..=...+-+ .-..++|+|.++.+...|.. .|+..+.+
T Consensus 41 ~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~------~g~~l~l~~~~~~v~~~l~~-~gl~~~~~ 99 (111)
T d1h4xa_ 41 VTTIIWNFERLSFMDSSGVGLVLGRMRELEA------VAGRTILLNPSPTMRKVFQF-SGLGPWMM 99 (111)
T ss_dssp CSEEEEEEEEEEEECTHHHHHHHHHHHHHHT------TTCEEEEESCCHHHHHHHHH-TTCGGGEE
T ss_pred CcEEEEEEECCcccCchHHHHHHHHHHHHHH------CCCEEEEecCCHHHHHHHHH-cCCCeEEe
Confidence 4569999999999987766665543332222 23478999999999888875 46665543
No 11
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.67 E-value=9.5 Score=29.39 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=9.1
Q ss_pred CCceEEEeeee
Q 020292 213 PNKIYIVGGLV 223 (328)
Q Consensus 213 ~~~vYIIGGiV 223 (328)
-.++||+||.|
T Consensus 19 g~~~ylVGG~V 29 (139)
T d1miwa2 19 GYDAYFVGGAV 29 (139)
T ss_dssp TCCEEEESHHH
T ss_pred CCEEEEEcHHH
Confidence 34899999987
No 12
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=20.39 E-value=53 Score=25.69 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred cEEEecCCCccccCcCC---CCce-EEE---eeeecCCCChhhHHHHHHHcCCcccccccccccccCCCcccchHHHHHH
Q 020292 196 NLVYLTADSDTVLDDLD---PNKI-YIV---GGLVDRNRWKGITMKKAQEQGLQTGKLPIGNYLKMSSSQVLTVNQVLEI 268 (328)
Q Consensus 196 ~iVYLSpDS~~~L~eld---~~~v-YII---GGiVDrnr~Kglt~~kA~~~GI~taRLPI~eyi~l~~~~VLtiN~V~eI 268 (328)
-++++.+++...+..+. ..++ .|| ||+.|.- .+.+.+.|+... .| |..||.+-+..=.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEGGfs~~E------~~~~~~~g~~~v--------~L-G~~ILR~ETA~i~ 158 (174)
T d1nxza2 94 LKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQE------IAQTEQQGFTEI--------LL-GKRVLRTETASLA 158 (174)
T ss_dssp EEEEECTTCSCBGGGCCCCCTTCEEEEECCTTCCCHHH------HHHHHHTTCEEE--------BC-CSSCCCHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhccCCCCcEEEEEcCCcCcCHHH------HHHHHHCCCeEe--------eC-CCCcchHHhHHHH
Confidence 35667777766655433 3444 455 5665522 345667776532 22 4568888875544
Q ss_pred HHHhh--cCCCHHHH
Q 020292 269 LLKFL--ETRDWEAS 281 (328)
Q Consensus 269 Ll~~~--e~~DW~~A 281 (328)
.+..+ ..|||.+|
T Consensus 159 als~l~~~~gdl~~~ 173 (174)
T d1nxza2 159 AISALQICFGDLGEA 173 (174)
T ss_dssp HHHHHHHHHSSTTCC
T ss_pred HHHHHHHHhcccccC
Confidence 44443 35898765
No 13
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Probab=20.29 E-value=21 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=17.5
Q ss_pred cCCcEEEecCCCcccCHHHHHHHH
Q 020292 113 NGQNIIIDLEFSHLMSRAEIQSLV 136 (328)
Q Consensus 113 ~~~~IvIDcsf~~lM~~kEi~sL~ 136 (328)
..-.+|+||.|.....+.++....
T Consensus 38 DnGN~IlD~~~~~i~dp~~l~~~L 61 (72)
T d1m0sa2 38 DNGNVILDVHNFSILNPVEIEKEL 61 (72)
T ss_dssp TTSCEEEEEESCCCSCHHHHHHHH
T ss_pred cCCCEEEECCCCCcCCHHHHHHHH
Confidence 456899999999877776544433
Done!