BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020294
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
           (Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
           Resolution
 pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
           (Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
           Resolution
          Length = 312

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 14/225 (6%)

Query: 73  DAGSFFVKTNRSIGPSMFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFG 132
           +  + FVK N     S F  EA  L  + +T +I  P  + +G    G S++++E     
Sbjct: 58  EVQTVFVKINERSYRSXFRAEADQLALLAKTNSINVPLVYGIGN-SQGHSFLLLE--ALN 114

Query: 133 SSRGNQS---VFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLG 189
            S+  QS   +F +K+A++H+     K +G D D  +G   Q N W ++W +F++E+R+G
Sbjct: 115 KSKNKQSSFTIFAEKIAQLHQIQGPDK-YGLDFDTWLGPIYQPNDWQTSWAKFFSENRIG 173

Query: 190 YQLKLALDQYGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGN-ISSDKNGEPVI 248
           +QL++  ++     I+     +++ +A      N +P +LHG+LW  N I  D   +  +
Sbjct: 174 WQLQICKEK---GLIFGNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVD--DKIFV 228

Query: 249 LDPACYYGHNEAEFGM-SWCAGFGGSFYNSYFEVMPKQPGFEKRR 292
            +PACY+G  E +    S    F  +FY  Y E+ P + G+ +R+
Sbjct: 229 CNPACYWGDRECDIAFSSLFEPFPTNFYQRYNEIYPLEEGYLERK 273


>pdb|3F7W|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
           (Yp_290396.1) From Thermobifida Fusca Yx-Er1 At 1.85 A
           Resolution
          Length = 288

 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 114/265 (43%), Gaps = 26/265 (9%)

Query: 72  TDAGSFFVKTNRSIGPSM---FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEF 128
            D    FVK      P++   F  EALGL   +  R+  +P P   G        +  E+
Sbjct: 37  ADGTPLFVKALPDDAPALDGLFRAEALGLD--WLGRSFGSPVPQVAG---WDDRTLAXEW 91

Query: 129 I-EFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHR 187
           + E   +      FG +LA  H AG  S  FG   D  IG  P  N   S W EFYAE R
Sbjct: 92  VDERPPTPEAAERFGHQLAAXHLAGAES--FGATWDGYIGPLPXDNTPRSTWPEFYAEQR 149

Query: 188 LGYQLKLALDQ----YGDSTIYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKN 243
           +   L+ A D+     GD  + ++    + +LA    G    P  +HGDLW+GN+    +
Sbjct: 150 ILPYLRRAADRGALTPGDVRLVEKVLDALDHLA----GDPEPPARIHGDLWNGNVLWQDD 205

Query: 244 GEPVILDPACYYGHNEAEFGMSWCAGFGGSFY----NSYFEVMPKQPGFEKRRDXXXXXX 299
           G  V++DPA + GH EA+      A FG  +     ++Y EV P   G+  R        
Sbjct: 206 GA-VVIDPAAHGGHREADLAX--LALFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHP 262

Query: 300 XXXXXXXFGSGYRSSALSIIDDYLR 324
                  FG+ YR++ +      LR
Sbjct: 263 LLVHVCLFGAAYRTTLVDTARAALR 287


>pdb|3ND1|A Chain A, Crystal Structure Of Precorrin-6a Synthase From
           Rhodobacter Capsulatus
 pdb|3ND1|B Chain B, Crystal Structure Of Precorrin-6a Synthase From
           Rhodobacter Capsulatus
          Length = 275

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 132 GSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE------ 185
           G+ + + +   +++   H    ++K   F +     S P   K   +W +  AE      
Sbjct: 57  GADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSYRKGVDDWHDAIAETWLSEI 116

Query: 186 --HRLGYQLKLALDQYGDSTIYQRGHRLMKNL 215
             H  G + ++AL  +GD ++Y    R+ + L
Sbjct: 117 TAHVPGLEGRVALLVWGDPSLYDSTLRIAERL 148


>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
 pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
          Length = 197

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 127 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVD 163
           EF+EFGS +GN  +FG K   +H+  K +K    D++
Sbjct: 84  EFLEFGSYQGN--MFGTKFETVHQIHKQNKIAILDIE 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,293,272
Number of Sequences: 62578
Number of extensions: 441842
Number of successful extensions: 911
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 7
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)