BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020295
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 82
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 83 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 142
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 143 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 202
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 203 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 244
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 245 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 277
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 20 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 79
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 80 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 139
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 140 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 199
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 200 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 241
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 242 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 274
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 140/276 (50%), Gaps = 31/276 (11%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQN--------GDV 89
W + +SEL L L P+GQ+FRW++ P ++G + + +L + GD+
Sbjct: 14 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDL 73
Query: 90 CYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVE 149
+P E A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+E
Sbjct: 74 SQASRPTPDE---LEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIE 130
Query: 150 CLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA- 207
CL F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 131 CLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKL 190
Query: 208 GFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALC 267
G GYR A+Y++ + + + GG WL LR+ +EA ALC
Sbjct: 191 GLGYR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALC 232
Query: 268 TLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
LPGVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 233 ILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 268
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PV+ H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVEVHMWHIAQR 269
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PV+ H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVNVHMWHIAQR 269
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PV H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVQVHMWHIAQR 269
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG KVA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 195 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 236
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 237 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD H+W IA R
Sbjct: 243 GVGTQVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 201 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 242
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG +VA CI L +LD+ A+PVD +W IA R
Sbjct: 243 GVGTQVADCICLMALDKPQAVPVDVAMWHIAQR 275
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 25/273 (9%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 38 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 97
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 98 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 157
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 158 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 217
Query: 211 YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLP 270
YR A+Y++ + + + GG WL LR+ +EA ALC LP
Sbjct: 218 YR-----------------ARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILP 259
Query: 271 GVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303
GVG VA I L +LD+ A+PV+ H+W IA R
Sbjct: 260 GVGTCVADKICLMALDKPQAVPVNVHMWHIAQR 292
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 27/264 (10%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRSAPQSSLLFSVRRSF 227
++ ++ +G ++ FP G+R
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFR--------------- 180
Query: 228 KQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 287
AKY+ TVD + + G L ++ L+ E + L GVGP+VA CI LFS+ +
Sbjct: 181 --AKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQK 234
Query: 288 HHAIPVDTHVWK-IATRYLLPELA 310
+ A PVDT V K + + Y+ P+++
Sbjct: 235 YSAFPVDTWVKKAMMSLYVAPDVS 258
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 27/264 (10%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRSAPQSSLLFSVRRSF 227
++ ++ +G ++ FP G+R
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFR--------------- 180
Query: 228 KQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 287
AKY+ TVD + + G L ++ L+ E + L GVGP+VA CI LFS+ +
Sbjct: 181 --AKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQK 234
Query: 288 HHAIPVDTHVWK-IATRYLLPELA 310
+ A PVDT V K + + Y+ P+++
Sbjct: 235 YSAFPVDTWVKKAMMSLYVAPDVS 258
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 27/264 (10%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRSAPQSSLLFSVRRSF 227
++ ++ +G ++ FP G+R
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFR--------------- 180
Query: 228 KQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 287
AKY+ TVD + + G L ++ L+ E + L GVGP+VA CI LFS+ +
Sbjct: 181 --AKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQK 234
Query: 288 HHAIPVDTHVWK-IATRYLLPELA 310
+ A PVDT V K + + Y+ P+++
Sbjct: 235 YSAFPVDTWVKKAMMSLYVAPDVS 258
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 27/264 (10%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPXIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRSAPQSSLLFSVRRSF 227
++ ++ +G ++ FP G+R
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFR--------------- 180
Query: 228 KQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 287
AKY+ TVD + + G L ++ L+ E + L GVGPKVA CI LFS +
Sbjct: 181 --AKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQK 234
Query: 288 HHAIPVDTHVWK-IATRYLLPELA 310
+ A PVDT V K + Y+ P+++
Sbjct: 235 YSAFPVDTWVKKAXXSLYVAPDVS 258
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna.
pdb|3S6I|D Chain D, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna
Length = 228
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 256 KLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL--LPEL 309
+L +E I+ L + G+G + +FSL++ +P D + RYL LP++
Sbjct: 131 RLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKI 186
>pdb|2F2F|B Chain B, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
pdb|2F2F|E Chain E, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
Length = 283
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 38/86 (44%)
Query: 218 SLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVA 277
++LFS + + T ++ S ++W +++R+L E + + G +
Sbjct: 13 TMLFSFSSYANLSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPS 72
Query: 278 ACIALFSLDQHHAIPVDTHVWKIATR 303
+ + + QH P++ + W + TR
Sbjct: 73 SAVRTSRVIQHGGTPIEEYTWNLGTR 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,771
Number of Sequences: 62578
Number of extensions: 318937
Number of successful extensions: 640
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 49
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)