Query 020295
Match_columns 328
No_of_seqs 259 out of 1792
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhi_A N-glycosylase/DNA lyase 100.0 1.1E-57 3.7E-62 444.4 29.0 272 35-325 35-317 (360)
2 3i0w_A 8-oxoguanine-DNA-glycos 100.0 2.2E-57 7.6E-62 430.7 28.2 253 44-327 17-271 (290)
3 2jhn_A ALKA, 3-methyladenine D 100.0 2.4E-40 8.1E-45 314.4 23.2 237 53-327 29-271 (295)
4 4b21_A Probable DNA-3-methylad 100.0 1.7E-40 5.9E-45 305.7 19.0 188 108-327 18-211 (232)
5 1mpg_A ALKA, 3-methyladenine D 100.0 8.2E-39 2.8E-43 301.9 24.3 242 45-327 7-261 (282)
6 3s6i_A DNA-3-methyladenine gly 100.0 6.3E-36 2.2E-40 274.6 20.5 181 115-327 14-200 (228)
7 2yg9_A DNA-3-methyladenine gly 100.0 1.3E-35 4.5E-40 271.9 18.1 176 110-327 22-201 (225)
8 2h56_A DNA-3-methyladenine gly 100.0 1.3E-34 4.6E-39 266.5 18.5 178 117-327 20-199 (233)
9 2abk_A Endonuclease III; DNA-r 100.0 4.7E-30 1.6E-34 232.5 14.6 157 128-326 8-166 (211)
10 1orn_A Endonuclease III; DNA r 100.0 1.7E-29 5.7E-34 231.5 16.9 157 129-326 13-171 (226)
11 1kea_A Possible G-T mismatches 100.0 1.9E-28 6.6E-33 223.6 17.4 145 144-327 32-177 (221)
12 1pu6_A 3-methyladenine DNA gly 100.0 1.1E-28 3.7E-33 224.9 14.9 135 144-307 27-163 (218)
13 3n0u_A Probable N-glycosylase/ 100.0 5.8E-29 2E-33 227.0 13.0 160 128-328 29-193 (219)
14 3fhg_A Mjogg, N-glycosylase/DN 100.0 1.4E-28 4.8E-33 222.5 12.6 148 142-327 28-180 (207)
15 1kg2_A A/G-specific adenine gl 100.0 3.8E-28 1.3E-32 222.1 14.4 144 144-326 27-171 (225)
16 3fhf_A Mjogg, N-glycosylase/DN 99.9 1.7E-27 5.9E-32 216.5 13.4 155 131-327 27-187 (214)
17 3n5n_X A/G-specific adenine DN 99.9 6.8E-27 2.3E-31 221.0 11.5 125 145-308 47-172 (287)
18 3fsp_A A/G-specific adenine gl 99.9 4.2E-26 1.4E-30 222.2 12.8 144 144-326 36-180 (369)
19 4e9f_A Methyl-CPG-binding doma 99.9 6.9E-24 2.4E-28 184.9 10.0 118 144-305 28-146 (161)
20 2fmp_A DNA polymerase beta; nu 90.8 1 3.5E-05 42.8 9.5 48 229-282 69-116 (335)
21 3vdp_A Recombination protein R 89.8 0.21 7.3E-06 44.7 3.5 30 258-287 20-49 (212)
22 1x2i_A HEF helicase/nuclease; 89.2 0.55 1.9E-05 33.9 4.9 29 251-283 37-65 (75)
23 4glx_A DNA ligase; inhibitor, 89.0 1.1 3.8E-05 45.8 8.6 96 191-304 469-576 (586)
24 1vdd_A Recombination protein R 88.2 0.37 1.3E-05 43.5 3.9 29 259-287 7-35 (228)
25 2ofk_A 3-methyladenine DNA gly 87.3 4 0.00014 35.6 9.9 140 124-287 7-171 (183)
26 2a1j_B DNA excision repair pro 87.2 0.79 2.7E-05 34.9 4.8 29 251-283 55-83 (91)
27 1z00_A DNA excision repair pro 87.1 0.79 2.7E-05 34.7 4.8 40 237-284 32-71 (89)
28 4gfj_A Topoisomerase V; helix- 86.9 0.55 1.9E-05 46.3 4.5 78 189-282 537-640 (685)
29 1dgs_A DNA ligase; AMP complex 86.7 0.72 2.5E-05 47.9 5.6 82 192-283 465-558 (667)
30 2jg6_A DNA-3-methyladenine gly 86.2 4.8 0.00017 35.2 9.8 141 123-287 6-171 (186)
31 2ihm_A POL MU, DNA polymerase 86.1 0.9 3.1E-05 43.6 5.6 47 229-281 73-119 (360)
32 1kft_A UVRC, excinuclease ABC 86.0 0.8 2.7E-05 33.8 4.2 21 263-283 55-75 (78)
33 2owo_A DNA ligase; protein-DNA 85.7 0.59 2E-05 48.6 4.4 83 191-283 469-563 (671)
34 2ztd_A Holliday junction ATP-d 85.4 0.35 1.2E-05 43.3 2.1 27 262-288 121-147 (212)
35 1jms_A Terminal deoxynucleotid 85.2 1 3.6E-05 43.5 5.7 37 246-282 103-139 (381)
36 2bcq_A DNA polymerase lambda; 85.2 3.1 0.00011 39.4 8.8 77 246-326 80-159 (335)
37 3b0x_A DNA polymerase beta fam 84.9 1.6 5.6E-05 44.2 7.1 23 260-282 89-111 (575)
38 2duy_A Competence protein come 83.8 0.61 2.1E-05 34.2 2.6 21 263-283 26-46 (75)
39 1z00_B DNA repair endonuclease 82.4 0.92 3.2E-05 34.6 3.1 28 259-287 13-40 (84)
40 2ztd_A Holliday junction ATP-d 81.2 1 3.4E-05 40.3 3.4 28 259-287 83-110 (212)
41 1ixr_A Holliday junction DNA h 79.2 0.65 2.2E-05 40.8 1.5 25 263-287 106-130 (191)
42 2a1j_A DNA repair endonuclease 79.1 1.1 3.7E-05 32.1 2.4 24 263-287 3-26 (63)
43 1cuk_A RUVA protein; DNA repai 78.6 0.7 2.4E-05 40.9 1.5 21 263-283 107-127 (203)
44 2duy_A Competence protein come 78.0 0.54 1.8E-05 34.5 0.5 19 263-281 52-70 (75)
45 2w9m_A Polymerase X; SAXS, DNA 77.6 0.97 3.3E-05 45.9 2.4 23 260-282 93-115 (578)
46 1ixr_A Holliday junction DNA h 76.4 1.1 3.9E-05 39.2 2.2 28 259-287 67-94 (191)
47 2edu_A Kinesin-like protein KI 75.8 4 0.00014 31.4 5.0 20 265-284 71-90 (98)
48 2bgw_A XPF endonuclease; hydro 74.1 3.7 0.00013 36.0 5.0 39 237-283 175-213 (219)
49 1z00_A DNA excision repair pro 73.9 2.3 7.8E-05 32.0 3.1 26 260-286 15-40 (89)
50 3arc_U Photosystem II 12 kDa e 73.7 1.5 5.2E-05 34.3 2.1 51 195-282 19-70 (97)
51 1s5l_U Photosystem II 12 kDa e 73.2 1.3 4.5E-05 36.8 1.7 19 263-281 62-80 (134)
52 1x2i_A HEF helicase/nuclease; 72.8 2.6 9E-05 30.1 3.1 26 260-286 10-35 (75)
53 1cuk_A RUVA protein; DNA repai 72.2 1.5 5.2E-05 38.7 1.9 29 258-287 67-95 (203)
54 3arc_U Photosystem II 12 kDa e 71.4 1.4 4.8E-05 34.6 1.3 20 263-282 25-44 (97)
55 2edu_A Kinesin-like protein KI 71.0 2.1 7.2E-05 33.0 2.3 21 263-283 39-59 (98)
56 2a1j_B DNA excision repair pro 70.6 3 0.0001 31.6 3.1 26 260-286 28-53 (91)
57 2i5h_A Hypothetical protein AF 68.4 1.8 6.3E-05 38.3 1.6 23 262-284 130-152 (205)
58 2kp7_A Crossover junction endo 67.1 2.9 9.8E-05 32.0 2.3 39 230-281 37-75 (87)
59 3r8n_M 30S ribosomal protein S 66.5 15 0.00052 29.5 6.6 23 261-283 13-35 (114)
60 3u5c_S 40S ribosomal protein S 63.7 14 0.00047 31.0 6.0 23 262-284 28-50 (146)
61 3iz6_M 40S ribosomal protein S 63.3 17 0.00058 30.7 6.5 25 260-284 24-48 (152)
62 3j20_O 30S ribosomal protein S 63.0 15 0.00052 30.8 6.2 23 261-283 20-42 (148)
63 1kft_A UVRC, excinuclease ABC 62.0 2.5 8.6E-05 31.0 1.0 24 262-286 22-45 (78)
64 4gfj_A Topoisomerase V; helix- 60.4 7.6 0.00026 38.4 4.3 70 187-276 485-572 (685)
65 2ihm_A POL MU, DNA polymerase 60.4 7.9 0.00027 37.0 4.5 42 229-283 39-80 (360)
66 1b22_A DNA repair protein RAD5 59.8 11 0.00037 30.2 4.6 34 247-284 45-78 (114)
67 2xzm_M RPS18E; ribosome, trans 58.6 23 0.00078 30.0 6.6 23 261-283 27-49 (155)
68 1wcn_A Transcription elongatio 58.0 19 0.00066 26.1 5.3 34 190-239 28-62 (70)
69 2bcq_A DNA polymerase lambda; 57.1 6.6 0.00023 37.1 3.3 41 230-283 36-76 (335)
70 2bgw_A XPF endonuclease; hydro 56.8 8.2 0.00028 33.7 3.7 26 261-287 159-184 (219)
71 1jms_A Terminal deoxynucleotid 56.7 9.2 0.00031 36.8 4.3 42 229-283 58-99 (381)
72 2fmp_A DNA polymerase beta; nu 54.7 9.4 0.00032 36.0 3.9 42 229-283 35-76 (335)
73 3c1y_A DNA integrity scanning 51.0 15 0.00052 35.4 4.7 38 236-281 327-364 (377)
74 1vq8_Y 50S ribosomal protein L 49.2 3.6 0.00012 37.4 0.0 26 262-287 13-38 (241)
75 3psf_A Transcription elongatio 44.4 36 0.0012 37.0 6.9 75 195-283 661-736 (1030)
76 1ucv_A Ephrin type-A receptor 41.1 55 0.0019 24.0 5.6 21 190-210 31-51 (81)
77 3bzc_A TEX; helix-turn-helix, 41.1 31 0.001 36.4 5.5 74 199-305 505-588 (785)
78 3sgi_A DNA ligase; HET: DNA AM 40.7 5.8 0.0002 40.8 0.0 29 251-283 552-580 (615)
79 3psi_A Transcription elongatio 40.1 42 0.0014 37.2 6.6 75 195-283 658-733 (1219)
80 2vqe_M 30S ribosomal protein S 39.1 12 0.00043 30.5 1.8 22 261-282 14-35 (126)
81 1b22_A DNA repair protein RAD5 39.0 40 0.0014 26.8 4.8 36 190-241 46-82 (114)
82 2w9m_A Polymerase X; SAXS, DNA 38.2 12 0.00041 37.8 1.9 16 265-280 132-147 (578)
83 3c1y_A DNA integrity scanning 36.8 42 0.0014 32.4 5.3 40 187-242 332-372 (377)
84 3b0x_A DNA polymerase beta fam 35.8 17 0.00057 36.7 2.5 18 265-282 129-146 (575)
85 1s5l_U Photosystem II 12 kDa e 33.4 31 0.0011 28.5 3.3 19 263-281 88-106 (134)
86 1z3e_B DNA-directed RNA polyme 31.4 27 0.00093 25.6 2.4 31 247-281 28-58 (73)
87 3c65_A Uvrabc system protein C 30.9 10 0.00035 34.0 0.0 19 263-282 204-222 (226)
88 2a1j_A DNA repair endonuclease 30.9 39 0.0013 23.7 3.1 21 189-210 23-43 (63)
89 3gfk_B DNA-directed RNA polyme 30.3 71 0.0024 23.8 4.6 31 247-281 35-65 (79)
90 2nrt_A Uvrabc system protein C 30.1 28 0.00097 31.0 2.7 20 262-281 166-185 (220)
91 2lkw_A Membrane fusion protein 29.1 19 0.00064 20.8 0.9 10 18-27 8-17 (26)
92 1u9l_A Transcription elongatio 28.9 1.6E+02 0.0055 21.1 6.4 38 190-242 27-64 (70)
93 1exn_A 5'-exonuclease, 5'-nucl 26.1 27 0.00093 32.3 2.0 21 266-287 205-225 (290)
94 2ziu_A MUS81 protein; helix-ha 25.9 37 0.0013 31.1 2.9 23 260-282 233-255 (311)
95 2rqr_A CED-12 homolog, engulfm 25.9 1.8E+02 0.0061 22.7 6.6 21 54-74 78-98 (119)
96 2csb_A Topoisomerase V, TOP61; 24.8 1.9E+02 0.0065 26.8 7.3 17 189-205 373-389 (519)
97 1wcn_A Transcription elongatio 24.4 1.2E+02 0.0042 21.6 4.9 34 247-284 27-60 (70)
98 3bqs_A Uncharacterized protein 23.6 46 0.0016 25.5 2.5 23 264-286 4-26 (93)
99 3q8k_A Flap endonuclease 1; he 23.4 33 0.0011 32.3 2.0 15 268-282 236-250 (341)
100 3psi_A Transcription elongatio 22.3 30 0.001 38.4 1.6 22 262-283 743-764 (1219)
101 3psf_A Transcription elongatio 21.9 24 0.00081 38.4 0.7 20 263-282 747-766 (1030)
102 3k4g_A DNA-directed RNA polyme 21.7 51 0.0017 25.0 2.4 32 247-282 31-62 (86)
103 1t57_A Conserved protein MTH16 21.7 48 0.0016 29.3 2.5 50 237-297 119-168 (206)
104 3c65_A Uvrabc system protein C 21.5 20 0.00067 32.2 0.0 28 262-290 171-198 (226)
105 3mab_A Uncharacterized protein 20.0 29 0.001 26.7 0.7 24 264-287 4-27 (93)
No 1
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=1.1e-57 Score=444.42 Aligned_cols=272 Identities=35% Similarity=0.696 Sum_probs=245.0
Q ss_pred CCCcccccCCCCCCCcCcccCCCCcccceecCCceEEEeECCeEEEEEEecCCcEEEEEcCCCC------hHHHHHHHHH
Q 020295 35 PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPS------EPAAKSALLD 108 (328)
Q Consensus 35 ~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~~~~~~g~~g~~~i~l~q~~~~~l~~~~~~~~~------~~~~~~~l~~ 108 (328)
+..|++|++++.+|||+.||.|||||||++.+++.|+|++++.+|.|+|.+ ++|.|++++... ..++.+.+++
T Consensus 35 ~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~d~~w~~v~~~~v~~l~q~~-~~v~~~~~~~~~~~~~~~~~~~~~~~r~ 113 (360)
T 2xhi_A 35 PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTE-EQLHCTVYRGDKSQASRPTPDELEAVRK 113 (360)
T ss_dssp GGGCEEEECCTTTCCHHHHTTTTSCSCCEEEETTEEEEEETTEEEEEEECS-SEEEEEEECCSSSCCCCCCHHHHHHHHH
T ss_pred cCCceEecCCccccCHHHHcCCCCccceeecCCCeEEEEECCEEEEEEEcC-CEEEEEEecCcccccccchHHHHHHHHH
Confidence 478999999999999999999999999999877899999999999999964 568888876432 2367899999
Q ss_pred hhcCCCCHHHHHHHHhccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCccccccc
Q 020295 109 FLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEF 187 (328)
Q Consensus 109 ~f~Ld~dl~~~~~~~~~~D~~l~~l~~~~~G~R~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~ 187 (328)
||+||.|++.+++.|...||.|+++++.++|+|++++||||+||++||+||+++++|.+++++|+ .||+++.++.|..+
T Consensus 114 ~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~ 193 (360)
T 2xhi_A 114 YFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTY 193 (360)
T ss_dssp HTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCCCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEE
T ss_pred hcccCCCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCccc
Confidence 99999999999999988999999999999999999999999999999999999999999999998 79998877788889
Q ss_pred ccCCCHHHHhcCCH-HHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHh
Q 020295 188 HEFPSLERLSLVSE-VELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDAL 266 (328)
Q Consensus 188 ~~fPtpe~La~~~~-e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L 266 (328)
+.||||++|++++. +.|+.+|+||| |+||+++|+.+.+.++ |.++|+.|..+++++++++|
T Consensus 194 ~~fPtpe~La~~~~ee~Lr~~Gl~~R-----------------A~~I~~~A~~i~~~~~-G~~~L~~l~~~~~~~~~~~L 255 (360)
T 2xhi_A 194 HGFPSLQALAGPEVEAHLRKLGLGYR-----------------ARYVSASARAILEEQG-GLAWLQQLRESSYEEAHKAL 255 (360)
T ss_dssp ECCCCHHHHTSTTHHHHHHHTTCTTH-----------------HHHHHHHHHHHHHTTC-THHHHHGGGTSCHHHHHHHH
T ss_pred ccCCCHHHHHcCCHHHHHHHcCCcHH-----------------HHHHHHHHHHHHhccC-CccCHHHHhcCCHHHHHHHH
Confidence 99999999999986 58999999876 9999999999998664 57899999999999999999
Q ss_pred hcCCCccHHHHHHHHHHhCCCCCccccchHHHHHHHHc-CCCccc--CCCCCHHHHHHHHHH
Q 020295 267 CTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRY-LLPELA--GVRLTPKLCSRVAEA 325 (328)
Q Consensus 267 ~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~rl-~~~~~~--~~~lt~k~y~~i~e~ 325 (328)
++|||||+|||+|||+|++|++|+||||+||+|+++++ ++.... .+.++++.|.++.+.
T Consensus 256 ~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~ 317 (360)
T 2xhi_A 256 CILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNF 317 (360)
T ss_dssp TTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCcccccccccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999996 554321 256788888885443
No 2
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=2.2e-57 Score=430.72 Aligned_cols=253 Identities=30% Similarity=0.488 Sum_probs=231.4
Q ss_pred CCCCCCcCcccCCCCcccceecCCceEEEeECCeEEEEEEecCCcEEEEEcCCCChHHHHHHHHHhhcCCCCHHHHHHHH
Q 020295 44 TQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGF 123 (328)
Q Consensus 44 ~~~~~~L~~tl~~GQ~Frw~~~~~~~~~g~~g~~~i~l~q~~~~~l~~~~~~~~~~~~~~~~l~~~f~Ld~dl~~~~~~~ 123 (328)
..++|||+.||.|||||||++.+++.|+||+++++|.|+|.+ +.+. +++ .+.+++.+.+++||+||.|++++++.+
T Consensus 17 ~~~~~~l~~tl~~GQ~Frw~~~~~~~~~~v~~~~~~~l~q~~-~~~~--~~~-~~~~~~~~~~~~~fdLd~d~~~~~~~l 92 (290)
T 3i0w_A 17 NVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIG-EDVV--IYN-INEEEFKNVWSEYFDLYRDYGEIKKEL 92 (290)
T ss_dssp SCCSCCHHHHHSSSSCSSEEECTTSCEEEEETTEEEEEEEET-TEEE--EET-CCHHHHHHTHHHHTTTTSCHHHHHHHH
T ss_pred ecccCcHHHHhCccCccCcEEeCCCeEEEEECCEEEEEEEcC-CEEE--EEc-CCHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456899999999999999999988899999999999999985 4443 332 456778899999999999999999999
Q ss_pred hccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCCCHHHHhcCCHH
Q 020295 124 SASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEV 202 (328)
Q Consensus 124 ~~~D~~l~~l~~~~~G~R~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fPtpe~La~~~~e 202 (328)
+ .||.|+++++.++|+|++++||||+||++|||||+++++|.+++++|+ .||+++ ++.|..++.||||++|++++++
T Consensus 93 ~-~Dp~l~~~~~~~~glR~~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtpe~la~~~~e 170 (290)
T 3i0w_A 93 S-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL-EYKGKIYYAFPTVDKLHEFTEK 170 (290)
T ss_dssp T-TSHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHTTCCHH
T ss_pred h-hCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCc-ccCCcccccCCcHHHHHCCCHH
Confidence 8 899999999999999999999999999999999999999999999998 899988 7788899999999999999999
Q ss_pred HHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHH
Q 020295 203 ELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 203 ~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vll 282 (328)
+|+++|+||| |+||+++|+.+.+ |.++++.|..+++++++++|++|||||||||+||++
T Consensus 171 ~L~~~g~g~R-----------------a~~I~~~A~~i~~----g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 171 DFEECTAGFR-----------------AKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIML 229 (290)
T ss_dssp HHHHTTCGGG-----------------HHHHHHHHHHHHT----TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHcCCchH-----------------HHHHHHHHHHHHh----CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 9999999988 9999999999987 567899999999999999999999999999999999
Q ss_pred HhCCCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHH-HHhh
Q 020295 283 FSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVA-EAFC 327 (328)
Q Consensus 283 f~lg~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~-e~~~ 327 (328)
|++|++|+||||+||+|+++++|+.+ ..++++..++. +.|.
T Consensus 230 ~~lg~pd~fpvD~~v~r~~~rl~~~~----~~~~~~i~~~~~~~~~ 271 (290)
T 3i0w_A 230 FSMQKYSAFPVDTWVKKAMMSLYVAP----DVSLKKIRDFGREKFG 271 (290)
T ss_dssp HHHCCTTCCCCCHHHHHHHHHHTSCT----TCCHHHHHHHHHHHHG
T ss_pred HhCCCCCcceecHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcc
Confidence 99999999999999999999998753 35778887776 6664
No 3
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=2.4e-40 Score=314.40 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=199.7
Q ss_pred ccCCCCcccceecCCceEEEeECCeEEEEEEecCCcEEEEEcCCC-ChHHHHHHHHHhhcCCCCHHHHHHHHhccChhHH
Q 020295 53 TFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP-SEPAAKSALLDFLNMGISLGELWEGFSASDCRFA 131 (328)
Q Consensus 53 tl~~GQ~Frw~~~~~~~~~g~~g~~~i~l~q~~~~~l~~~~~~~~-~~~~~~~~l~~~f~Ld~dl~~~~~~~~~~D~~l~ 131 (328)
.+.+|+.+|+.+.+++ ..++.|++.+++.+.++...+. ..+.+.+.+++||+||.|++.+ ++...|+.++
T Consensus 29 ~~~~~~~~R~~~~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdLd~d~~~~--~~~~~D~~l~ 99 (295)
T 2jhn_A 29 VVESGVWRRAIVLDGR-------AVAVMAYPESERTIVVEGNFENREWEAVRRKLVEYLGLQNPEELY--RFMDGDEKLR 99 (295)
T ss_dssp EEETTEEEEEEEETTE-------EEEEEEEEEETTEEEEEESSCGGGHHHHHHHHHHHHTCSCCHHHH--HHHHTSHHHH
T ss_pred EEeCCEEEEEEEECCe-------eEEEEEEECCCCEEEEecCCchhhHHHHHHHHHHHhCCCCCHHHH--HhhccCHHHH
Confidence 4678888888887653 4567888754555655522111 2456889999999999999998 6777899999
Q ss_pred HHHHHhcCCccCC---CCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCCCHHHHhcCCHHHHHhc
Q 020295 132 ELAKYLAGARVLR---QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNA 207 (328)
Q Consensus 132 ~l~~~~~G~R~l~---~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~ 207 (328)
.+++.++|+|+.+ +||||+||++||+||+++++|.+++++|+ .||+++ +..|..++.||||++|+++++++|+.+
T Consensus 100 ~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtp~~la~~~~~~Lr~~ 178 (295)
T 2jhn_A 100 MLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEV-EWNGLKFYGFPTQEAILKAGVEGLREC 178 (295)
T ss_dssp HHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCC-CCCCCccccCCCHHHHHcCCHHHHHHc
Confidence 9999999999986 99999999999999999999999999998 799877 356778899999999999999999999
Q ss_pred CCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 208 GFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 208 Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
|+++| ||+||+++|+. | +++.+..++.++++++|++|||||+|||+||++|++|
T Consensus 179 G~~~r----------------Ka~~i~~~A~~------g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg- 232 (295)
T 2jhn_A 179 GLSRR----------------KAELIVEIAKE------E---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG- 232 (295)
T ss_dssp TCCHH----------------HHHHHHHHHTC------S---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-
T ss_pred CCCHH----------------HHHHHHHHHHC------C---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-
Confidence 99765 89999999987 2 5777888999999999999999999999999999999
Q ss_pred CCccccc-hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 288 HHAIPVD-THVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 288 ~d~~PVD-thv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
+|+|||| .|++|+++++|... .+..|++++.++++.|.
T Consensus 233 ~d~fpvdD~~~rr~~~~~~g~~--~~~~~~~~~~~~~e~~~ 271 (295)
T 2jhn_A 233 KNVFPADDLGVRRAVSRLYFNG--EIQSAEKVREIARERFG 271 (295)
T ss_dssp CCCCCTTCHHHHHHHHHHHSTT--CCCCHHHHHHHHHHHTG
T ss_pred CCcccchHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHhcc
Confidence 9999995 56677999985321 12578899999999885
No 4
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=1.7e-40 Score=305.67 Aligned_cols=188 Identities=13% Similarity=0.212 Sum_probs=171.1
Q ss_pred HhhcCCCCHHHHHHHHhccChhHHHHHHHhcCCcc---CCCCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCccc
Q 020295 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARV---LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVE 183 (328)
Q Consensus 108 ~~f~Ld~dl~~~~~~~~~~D~~l~~l~~~~~G~R~---l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~ 183 (328)
-+|+||.|++++++.++..||.|+++++.++|+|+ ..+||||+||++||+||+++++|.+++.+|+ .||+.
T Consensus 18 ~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~----- 92 (232)
T 4b21_A 18 SHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDN----- 92 (232)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSS-----
T ss_pred CcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC-----
Confidence 46899999999999999889999999999999986 3579999999999999999999999999998 78863
Q ss_pred ccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCch-hhhhhhCCCHHHH
Q 020295 184 GFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAE-WLLSLRKLDLQEA 262 (328)
Q Consensus 184 g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~-~l~~L~~~~~~ea 262 (328)
+.||||++|+++++++|+.||+++| ||+||+++|+.+.+ |.+ +++.|..++++++
T Consensus 93 ----~~fPtpe~la~~~~e~Lr~~Gl~~~----------------Ka~~l~~~A~~~~~----g~~p~l~~l~~~~~~~~ 148 (232)
T 4b21_A 93 ----DEFPTPKQIMETDVETLHECGFSKL----------------KSQEIHIVAEAALN----KQIPSKSEIEKMSEEEL 148 (232)
T ss_dssp ----SSCCCHHHHHTSCHHHHHTTTCCHH----------------HHHHHHHHHHHHHT----TCSCCHHHHHHSCHHHH
T ss_pred ----CCCCCHHHHHcCCHHHHHHcCCcHH----------------HHHHHHHHHHHHHh----CCCCCHHHHHcCCHHHH
Confidence 5699999999999999999999765 99999999999987 556 8999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHhCCCCCcccc-chHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 263 IDALCTLPGVGPKVAACIALFSLDQHHAIPV-DTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf~lg~~d~~PV-Dthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
+++|++|||||+|||+|||+|+++++++||| |+||+|+++++|.. +..+|++++.++++.|+
T Consensus 149 ~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~---~~~~~~~~~~~~~e~w~ 211 (232)
T 4b21_A 149 MESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGL---SSKPQTEEVEKLTKPCK 211 (232)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTC---SSCCCHHHHHHHTGGGT
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHcc
Confidence 9999999999999999999999999999999 99999999999753 34678999999999986
No 5
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=8.2e-39 Score=301.88 Aligned_cols=242 Identities=17% Similarity=0.190 Sum_probs=196.1
Q ss_pred CCCCCcCcccCC-----CCcccceecCCceEEEe-ECCe--EEEEEEecC-CcEEEEEcCC--CChHHHHHHHHHhhcCC
Q 020295 45 QSELSLPLTFPT-----GQTFRWKKTGPLQYTGP-IGPH--LISLKHLQN-GDVCYHIHTS--PSEPAAKSALLDFLNMG 113 (328)
Q Consensus 45 ~~~~~L~~tl~~-----GQ~Frw~~~~~~~~~g~-~g~~--~i~l~q~~~-~~l~~~~~~~--~~~~~~~~~l~~~f~Ld 113 (328)
+.+||+..+|.. ++++.|...+ ..|.++ +++. ++.|+|.++ +.+.+++..+ +..+++.+.+++||+||
T Consensus 7 ~~P~~~~~~l~~l~~~~~~~~e~~~~~-~y~r~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 85 (282)
T 1mpg_A 7 QPPYDWSWMLGFLAARAVSSVETVADS-YYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQ 85 (282)
T ss_dssp CSCCCHHHHHHHHHHHCCTTTEEECSS-CEEEEEEETTEEEEEEEEEETTTTEEEEEECGGGGGGHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHhCCCCCCeEEEcCC-EEEEEEEECCEeEEEEEEEcCCCcEEEEEEecCCCccHHHHHHHHHHHHcCC
Confidence 457999999887 8888876443 233333 3544 889998643 4466666532 24567889999999999
Q ss_pred CCHHHHHHHHhccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCC
Q 020295 114 ISLGELWEGFSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191 (328)
Q Consensus 114 ~dl~~~~~~~~~~D~~l~~l~~~~~G~R~l~-~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fP 191 (328)
.|+..+++.+. .+++.++|+|+++ +||||+||++||+||++++++.+++.+|+ .||+.+.. .+ .++.||
T Consensus 86 ~d~~~~~~~l~-------~l~~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~-~~-~~~~fP 156 (282)
T 1mpg_A 86 CNPQIVNGALG-------RLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD-FP-EYICFP 156 (282)
T ss_dssp CCHHHHHHHHG-------GGGTTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSS-CT-TCBCCC
T ss_pred CCHHHHHHHHH-------HHHHHcCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCC-CC-CcccCC
Confidence 99999987654 4567789999988 99999999999999999999999999998 89988743 34 589999
Q ss_pred CHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCC
Q 020295 192 SLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPG 271 (328)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~G 271 (328)
||++|+++++++|+.+|+ |+ +||+||+++|+.+.+ |.++++.+ ++.++++++|++|||
T Consensus 157 tp~~la~~~~~~Lr~~G~-~~---------------~ra~~i~~~A~~~~~----~~~~~~~~--~~~~~~~~~L~~lpG 214 (282)
T 1mpg_A 157 TPQRLAAADPQALKALGM-PL---------------KRAEALIHLANAALE----GTLPMTIP--GDVEQAMKTLQTFPG 214 (282)
T ss_dssp CHHHHHTCCHHHHHHTTS-CH---------------HHHHHHHHHHHHHHH----TCSCSSCC--SCHHHHHHHHTTSTT
T ss_pred CHHHHHcCCHHHHHHcCC-CH---------------HHHHHHHHHHHHHHc----CCCCcccc--CCHHHHHHHHhcCCC
Confidence 999999999999999988 34 679999999999997 33444443 688999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 272 VGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 272 IG~ktAd~vllf~lg~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
||+|||+||++|++|++|+||||+|+.| +++ ...++++..++.+.|.
T Consensus 215 IG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l-------~~~~~~~~~~~~~~~~ 261 (282)
T 1mpg_A 215 IGRWTANYFALRGWQAKDVFLPDDYLIK--QRF-------PGMTPAQIRRYAERWK 261 (282)
T ss_dssp CCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHS-------TTCCHHHHHHHHGGGT
T ss_pred cCHHHHHHHHHHhCCCCCcCccccHHHH--HHh-------ccCCHHHHHHHHHHcC
Confidence 9999999999999999999999887755 444 1467888888888875
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-36 Score=274.55 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=160.6
Q ss_pred CHHHHHHHHhccChhHHHHHHHhcCCccC---CC-CHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccC
Q 020295 115 SLGELWEGFSASDCRFAELAKYLAGARVL---RQ-DPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEF 190 (328)
Q Consensus 115 dl~~~~~~~~~~D~~l~~l~~~~~G~R~l---~~-dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~f 190 (328)
|++++++.++..||.|+++++.++|+|+. ++ ||||+||++||+||++++++..++.+|..||. -+.|
T Consensus 14 ~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL~~~Gg---------~~~f 84 (228)
T 3s6i_A 14 SLTKAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN---------NGQF 84 (228)
T ss_dssp --CHHHHHHHTSCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSG---------GGSC
T ss_pred HHHHHHHHHHhhChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHHHHhcC---------CCCC
Confidence 56788899998999999999999999984 46 99999999999999999999999999943631 1679
Q ss_pred CCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCch-hhhhhhCCCHHHHHHHhhcC
Q 020295 191 PSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAE-WLLSLRKLDLQEAIDALCTL 269 (328)
Q Consensus 191 Ptpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~-~l~~L~~~~~~ea~~~L~~l 269 (328)
|||++|+++++++|+.||+++| ||+||+++|+.+.+ |.+ +++.|..+++++++++|++|
T Consensus 85 Ptp~~la~~~~e~Lr~~G~~~r----------------Ka~~i~~~A~~~~~----g~~p~~~~l~~~~~~e~~~~L~~l 144 (228)
T 3s6i_A 85 PTPEEIRDMDFEIMRACGFSAR----------------KIDSLKSIAEATIS----GLIPTKEEAERLSNEELIERLTQI 144 (228)
T ss_dssp CCHHHHHHSCHHHHHHHTCCHH----------------HHHHHHHHHHHHHH----TSSCCHHHHTTSCHHHHHHHHTTS
T ss_pred CCHHHHHcCCHHHHHHcCCCHH----------------HHHHHHHHHHHHHc----CCCCChHHHhcCCHHHHHHHHHhC
Confidence 9999999999999999999655 99999999999986 556 78999999999999999999
Q ss_pred CCccHHHHHHHHHHhCCCCCccccc-hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 270 PGVGPKVAACIALFSLDQHHAIPVD-THVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 270 ~GIG~ktAd~vllf~lg~~d~~PVD-thv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
||||+|||+|||+|++|++|+|||| .|++|+++++|.. +..+|++++.++++.|+
T Consensus 145 ~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~---~~~~~~~~~~~~~e~w~ 200 (228)
T 3s6i_A 145 KGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRL---PKIPTKMYVLKHSEICA 200 (228)
T ss_dssp TTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTC---SSCCCHHHHHHHHGGGT
T ss_pred CCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999995 5789999998753 34678999999999986
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=100.00 E-value=1.3e-35 Score=271.90 Aligned_cols=176 Identities=17% Similarity=0.171 Sum_probs=158.5
Q ss_pred hcCCCCHHHHHHHHhccChhHHHHHHHhcCC-c-cCCCCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccc
Q 020295 110 LNMGISLGELWEGFSASDCRFAELAKYLAGA-R-VLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFE 186 (328)
Q Consensus 110 f~Ld~dl~~~~~~~~~~D~~l~~l~~~~~G~-R-~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~ 186 (328)
...+.++.+.++.+...|+.++.+++.++|+ + ...+||||+||++|||||++++++.+++++|+ .||.
T Consensus 22 ~~~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~--------- 92 (225)
T 2yg9_A 22 VLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG--------- 92 (225)
T ss_dssp CCCCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTC---------
T ss_pred CCChhhHHHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCc---------
Confidence 4556788899999988999999999999999 5 56799999999999999999999999999998 5663
Q ss_pred cccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHh
Q 020295 187 FHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDAL 266 (328)
Q Consensus 187 ~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L 266 (328)
|||++|+++++++|+.||+++ +||+||+++|+.+.+ |.++++.+..+++++++++|
T Consensus 93 ----ptp~~la~~~~e~Lr~~G~~~----------------~KA~~i~~lA~~~~~----g~~~l~~l~~~~~~e~~~~L 148 (225)
T 2yg9_A 93 ----VVPAALLKVSGDDLRGVGLSW----------------AKVRTVQAAAAAAVS----GQIDFAHLSGQPDELVIAEL 148 (225)
T ss_dssp ----SCHHHHTTSCHHHHHHTTCCH----------------HHHHHHHHHHHHHHT----TSSCGGGCTTSCHHHHHHHH
T ss_pred ----CCHHHHHcCCHHHHHHCCCcH----------------HHHHHHHHHHHHHHh----CCcCHHHHhcCCHHHHHHHH
Confidence 899999999999999999965 489999999999987 67899999999999999999
Q ss_pred hcCCCccHHHHHHHHHHhCCCCCcccc-chHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 267 CTLPGVGPKVAACIALFSLDQHHAIPV-DTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 267 ~~l~GIG~ktAd~vllf~lg~~d~~PV-Dthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
++|||||+|||+|||+|++|++|+||| |+||+|+++++| + ++...++++.|.
T Consensus 149 ~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~-~--------~~~~~~~~e~~~ 201 (225)
T 2yg9_A 149 VQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY-P--------GEDWRDVTARWA 201 (225)
T ss_dssp HTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS-T--------TSCHHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC-C--------HHHHHHHHHHcC
Confidence 999999999999999999999999999 999999999998 1 234666677774
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=100.00 E-value=1.3e-34 Score=266.46 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=156.8
Q ss_pred HHHHHHHhccChhHHHHHHHhcCCcc-CCCCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCCCHH
Q 020295 117 GELWEGFSASDCRFAELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLE 194 (328)
Q Consensus 117 ~~~~~~~~~~D~~l~~l~~~~~G~R~-l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fPtpe 194 (328)
...++.+...|+.++.+++.++|++. ..+||||+||++||+||++++++..++.+|. .||. .||||+
T Consensus 20 ~~~~~~l~~~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~-----------~fPtp~ 88 (233)
T 2h56_A 20 SPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG-----------ALEKPE 88 (233)
T ss_dssp SHHHHHHHTTCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS-----------CCCCTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-----------CCCCHH
Confidence 34556777899999999999999976 6799999999999999999999999999998 7884 279999
Q ss_pred HHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccH
Q 020295 195 RLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGP 274 (328)
Q Consensus 195 ~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ 274 (328)
+|+++++++|+.+|+++ +||+||+++|+.+.+ |.++++.+..+++++++++|++|||||+
T Consensus 89 ~la~~~~e~Lr~~G~~~----------------~KA~~I~~~A~~i~~----~~~~~~~l~~~p~~~~~~~L~~lpGIG~ 148 (233)
T 2h56_A 89 QLYRVSDEALRQAGVSK----------------RKIEYIRHVCEHVES----GRLDFTELEGAEATTVIEKLTAIKGIGQ 148 (233)
T ss_dssp HHHTSCHHHHHHTTCCH----------------HHHHHHHHHHHHHHT----TSSCHHHHTTSCHHHHHHHHHTSTTCCH
T ss_pred HHHcCCHHHHHHcCCCH----------------HHHHHHHHHHHHHHh----CCCCHHHHhcCCHHHHHHHHHhCCCcCH
Confidence 99999999999999854 489999999999987 4457888889999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 275 KVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 275 ktAd~vllf~lg~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
|||+|||+|++|++|+||||+|+.|++.++++.. ++..++++++++.+.|.
T Consensus 149 kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~--~~~~~~~~~~~~~e~~~ 199 (233)
T 2h56_A 149 WTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGN--GEGDGKKLLIYHGKAWA 199 (233)
T ss_dssp HHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSS--SCSCHHHHHHHHHGGGT
T ss_pred HHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccC--CCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999988888764321 34578899999988875
No 9
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.97 E-value=4.7e-30 Score=232.55 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=132.1
Q ss_pred hhHHHHHHHhcCC--ccCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHH
Q 020295 128 CRFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELR 205 (328)
Q Consensus 128 ~~l~~l~~~~~G~--R~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr 205 (328)
+.++.+.+.+++. .+..+||||+||++|||||++++++..++.+|. ..||||++|+++++++|.
T Consensus 8 ~i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~--------------~~fpt~~~la~a~~~~l~ 73 (211)
T 2abk_A 8 EILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLY--------------PVANTPAAMLELGVEGVK 73 (211)
T ss_dssp HHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHT--------------TTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHH
Confidence 3556677777654 356799999999999999999999999998873 468999999999999987
Q ss_pred hcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhC
Q 020295 206 NAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSL 285 (328)
Q Consensus 206 ~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~l 285 (328)
++ |+++||+++||+||+++|+.+.++++| +.++++++|++|||||+|||+||++|++
T Consensus 74 ~~------------i~~~G~~~~KA~~l~~~a~~~~~~~~g-----------~~~~~~~~L~~l~GIG~~tA~~il~~~~ 130 (211)
T 2abk_A 74 TY------------IKTIGLYNSKAENIIKTCRILLEQHNG-----------EVPEDRAALEALPGVGRKTANVVLNTAF 130 (211)
T ss_dssp HH------------HTTSTTHHHHHHHHHHHHHHHHHHTTT-----------SCCSCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HH------------HHHcCCChHHHHHHHHHHHHHHHHcCC-----------CchHHHHHHHhCCCCChHHHHHHHHHHC
Confidence 73 556677789999999999999987754 3457899999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHh
Q 020295 286 DQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAF 326 (328)
Q Consensus 286 g~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~ 326 (328)
|++ +||||+||+|+++|+|+.. ..++++.++..+.|
T Consensus 131 ~~~-~~~vD~~v~Rv~~rlgl~~----~~~~~~~~~~~~~~ 166 (211)
T 2abk_A 131 GWP-TIAVDTHIFRVCNRTQFAP----GKNVEQVEEKLLKV 166 (211)
T ss_dssp CCC-CCCCCHHHHHHHHHHCSSC----CSSHHHHHHHHHHH
T ss_pred CCC-cCCcCHHHHHHHHHhCCCC----CCCHHHHHHHHHHh
Confidence 995 9999999999999998643 34677777666655
No 10
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.96 E-value=1.7e-29 Score=231.51 Aligned_cols=157 Identities=24% Similarity=0.289 Sum_probs=130.9
Q ss_pred hHHHHHHHhcCC--ccCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHh
Q 020295 129 RFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRN 206 (328)
Q Consensus 129 ~l~~l~~~~~G~--R~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~ 206 (328)
.+..+.+.+++. ++..+||||+||++|||||++++++..++.+|. ..||||++|+++++++|.+
T Consensus 13 i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~--------------~~fpt~~~la~a~~~~l~~ 78 (226)
T 1orn_A 13 CLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLF--------------EKYRTPHDYIAVPLEELEQ 78 (226)
T ss_dssp HHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHH--------------HHCCSHHHHHSSCHHHHHH
T ss_pred HHHHHHHHcCccCCCCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHH--------------HHCCCHHHHHcCCHHHHHH
Confidence 455666667654 456799999999999999999999999999885 4589999999999999876
Q ss_pred cCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCC
Q 020295 207 AGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 207 ~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg 286 (328)
+ |+++||+++||+||+++|+.+.++++| +.++++++|++|||||+|||+||++|++|
T Consensus 79 ~------------i~~~G~~~~KA~~l~~~a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~a~g 135 (226)
T 1orn_A 79 D------------IRSIGLYRNKARNIQKLCAMLIDKYNG-----------EVPRDRDELMKLPGVGRKTANVVVSVAFG 135 (226)
T ss_dssp H------------TGGGSSHHHHHHHHHHHHHHHHHHSTT-----------SCCSCHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred H------------HHHcCChHHHHHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHCCCccHHHHHHHHHHHCC
Confidence 3 567778889999999999999998765 33568999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHh
Q 020295 287 QHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAF 326 (328)
Q Consensus 287 ~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~ 326 (328)
+ ++||||+||+|++.|+|+.. ...++++.++..+.|
T Consensus 136 ~-~~~~vD~~v~Rv~~rlg~~~---~~~~~~~~~~~l~~~ 171 (226)
T 1orn_A 136 V-PAIAVDTHVERVSKRLGFCR---WDDSVLEVEKTLMKI 171 (226)
T ss_dssp C-CCCCCCHHHHHHHHHHTSSC---TTCCHHHHHHHHHHH
T ss_pred C-ceeeeCHHHHHHHHHhCCCC---CCCCHHHHHHHHHHh
Confidence 9 69999999999999998742 134566665555544
No 11
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.96 E-value=1.9e-28 Score=223.58 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhh
Q 020295 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSV 223 (328)
Q Consensus 144 ~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v 223 (328)
.+||||+||++|||||++++++..++.+|. ..||||++|+++++++|.++ |+++
T Consensus 32 ~~~pfe~lv~~IlsQqts~~~~~~~~~~l~--------------~~fptp~~la~a~~e~l~~~------------i~~~ 85 (221)
T 1kea_A 32 TRDPYVILITEILLRRTTAGHVKKIYDKFF--------------VKYKCFEDILKTPKSEIAKD------------IKEI 85 (221)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHCCSHHHHHHSCHHHHHHH------------TGGG
T ss_pred CCCHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHH------------HHHC
Confidence 589999999999999999999999999986 24899999999999999763 5667
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHHHHHHHH
Q 020295 224 RRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303 (328)
Q Consensus 224 ~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~r 303 (328)
||+++||+||+++|+.+.++++| +.++++++|++|||||+|||+||++|++++ ++||||+||+|+++|
T Consensus 86 G~~~~KA~~l~~~a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~~~~~-~~~~vD~~v~Rv~~r 153 (221)
T 1kea_A 86 GLSNQRAEQLKELARVVINDYGG-----------RVPRNRKAILDLPGVGKYTCAAVMCLAFGK-KAAMVDANFVRVINR 153 (221)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-----------SCCSCHHHHHTSTTCCHHHHHHHHHHTTCC-CCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-----------CchHHHHHHHhCCCCcHHHHHHHHHHhcCC-CcceecHHHHHHHHH
Confidence 77889999999999999987765 334678999999999999999999999999 699999999999999
Q ss_pred c-CCCcccCCCCCHHHHHHHHHHhh
Q 020295 304 Y-LLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 304 l-~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
+ ++..... ....+++.++++.|.
T Consensus 154 l~gl~~~~~-~~~~~~l~~~ae~~~ 177 (221)
T 1kea_A 154 YFGGSYENL-NYNHKALWELAETLV 177 (221)
T ss_dssp HHCGGGTTC-CTTSHHHHHHHHHHS
T ss_pred HhCCCCCCC-cHHHHHHHHHHHHhC
Confidence 8 6543221 222567777777764
No 12
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.96 E-value=1.1e-28 Score=224.93 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHh--hCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhh
Q 020295 144 RQDPVECLLQFLCSSNNNIARITKMVDFLAS--LGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLF 221 (328)
Q Consensus 144 ~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~--~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~ 221 (328)
++||||+||++|||||++++++..++.+|.. |++. ..||||++|+++++++|.++ |+
T Consensus 27 ~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~---------~~~~t~~~la~~~~e~L~~~------------ir 85 (218)
T 1pu6_A 27 NALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILEN---------DDEINLKKIAYIEFSKLAEC------------VR 85 (218)
T ss_dssp TTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCS---------CHHHHHHHHHHSCHHHHHHH------------TG
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCc---------cccccHHHHHhCCHHHHHHH------------HH
Confidence 4899999999999999999999999999973 2211 01344999999999999773 66
Q ss_pred hhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHHHHHH
Q 020295 222 SVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIA 301 (328)
Q Consensus 222 ~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~ 301 (328)
++||+++||+||+++|+.+.++++| ++ .++.++++++|++|||||+|||+|||+|++++ ++||||+|++|++
T Consensus 86 ~~G~~~~KA~~L~~~a~~i~~~~~~----l~---~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~-~~~~vD~~v~Ri~ 157 (218)
T 1pu6_A 86 PSGFYNQKAKRLIDLSGNILKDFQS----FE---NFKQEVTREWLLDQKGIGKESADAILCYACAK-EVMVVDKYSYLFL 157 (218)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHSS----HH---HHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCC-SCCCCCHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHHhcCC----hh---hccchHHHHHHHcCCCcCHHHHHHHHHHHCCC-CccccCHHHHHHH
Confidence 7788889999999999999987643 33 34678899999999999999999999999999 6999999999999
Q ss_pred HHcCCC
Q 020295 302 TRYLLP 307 (328)
Q Consensus 302 ~rl~~~ 307 (328)
+|+|+.
T Consensus 158 ~rlg~~ 163 (218)
T 1pu6_A 158 KKLGIE 163 (218)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 999864
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.96 E-value=5.8e-29 Score=226.98 Aligned_cols=160 Identities=18% Similarity=0.064 Sum_probs=131.8
Q ss_pred hhHHHHHHHhcCCc--cCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHH
Q 020295 128 CRFAELAKYLAGAR--VLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELR 205 (328)
Q Consensus 128 ~~l~~l~~~~~G~R--~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr 205 (328)
+.+....+.+.++. -...+||+.||++|||||++++++..++++| |+.|+.+++++|.
T Consensus 29 ~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------------------p~~l~~~~~eeL~ 88 (219)
T 3n0u_A 29 PLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI--------------------GKGFVHLPLEELA 88 (219)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------------------TTHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------HHHHHcCCHHHHH
Confidence 34444444554443 2457999999999999999999999988775 4678999998876
Q ss_pred hcCCCCCCCCccchhhhhh--cchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhh-cCCCccHHHHHHHHH
Q 020295 206 NAGFGYRSAPQSSLLFSVR--RSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALC-TLPGVGPKVAACIAL 282 (328)
Q Consensus 206 ~~Glg~R~~~~~~li~~v~--~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~-~l~GIG~ktAd~vll 282 (328)
++ |+++| |+++||+||+++|+.+ | ++..+...++++++++|+ ++||||+|||+|||+
T Consensus 89 ~~------------Ir~~G~Rf~~~KA~~I~~~a~~i-----g---~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~ 148 (219)
T 3n0u_A 89 EK------------LREVGHRYPQKRAEFIVENRKLL-----G---KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLR 148 (219)
T ss_dssp HH------------HHHTTCSSHHHHHHHHHHHGGGT-----T---THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred HH------------HHHhcchHHHHHHHHHHHHHHHH-----H---HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 52 55555 8899999999999976 1 245555789999999999 999999999999999
Q ss_pred HhCCCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhhC
Q 020295 283 FSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFCE 328 (328)
Q Consensus 283 f~lg~~d~~PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~~ 328 (328)
| +++.++||||+||+|+++|+|+.+...+++|++.|.++++.|++
T Consensus 149 ~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~ 193 (219)
T 3n0u_A 149 N-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRK 193 (219)
T ss_dssp T-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHH
T ss_pred H-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHH
Confidence 9 88789999999999999999886655689999999999998863
No 14
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.4e-28 Score=222.52 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=122.3
Q ss_pred cCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHH----HhcCCCCCCCCcc
Q 020295 142 VLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFGYRSAPQS 217 (328)
Q Consensus 142 ~l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~L----r~~Glg~R~~~~~ 217 (328)
...+||||+||++|||||++++++..++++| + +.|+.+++++| +.+|+|
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L---~-----------------~~l~~~~~e~l~~~ir~~G~g------- 80 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL---G-----------------QKIYYANEEEIRNILKSCKYR------- 80 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH---G-----------------GGGGTCCHHHHHHHHHHTTCT-------
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH---H-----------------HHHHcCCHHHHHHHHHHhccC-------
Confidence 3458999999999999999999999999887 1 34556666654 455543
Q ss_pred chhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHH
Q 020295 218 SLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHV 297 (328)
Q Consensus 218 ~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv 297 (328)
|+++||+||+++|+.+.+..+ .+++.+..+++++++++|+++||||||||+|||+|. ++.++||||+||
T Consensus 81 -------~~~~KA~~l~~~a~~~~~~~~---~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~-~~~~~~~vD~~v 149 (207)
T 3fhg_A 81 -------FYNLKAKYIIMAREKVYGRLK---EEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNV-GYFDLAIIDRHI 149 (207)
T ss_dssp -------THHHHHHHHHHHHHHHTTTHH---HHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHT-TCCSSCCCCHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHHhh---hhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCCcceecHHH
Confidence 667999999999998765321 257778888999999999999999999999999983 336999999999
Q ss_pred HHHHHHcCCCcc-cCCCCCHHHHHHHHHHhh
Q 020295 298 WKIATRYLLPEL-AGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 298 ~Ri~~rl~~~~~-~~~~lt~k~y~~i~e~~~ 327 (328)
+|+++|+|+.+. ..+.+|++.|.++.+.|+
T Consensus 150 ~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~ 180 (207)
T 3fhg_A 150 IDFMRRIGAIGETNVKQLSKSLYISFENILK 180 (207)
T ss_dssp HHHHHHTTSSCCCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccccccCCHHHHHHHHHHHH
Confidence 999999987654 458899999999998875
No 15
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.95 E-value=3.8e-28 Score=222.10 Aligned_cols=144 Identities=18% Similarity=0.281 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhh
Q 020295 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSV 223 (328)
Q Consensus 144 ~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v 223 (328)
.+||||+||++|||||++++++..++.+|. ..||||++|+++++++|+++ |+++
T Consensus 27 ~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~--------------~~~pt~~~la~~~~~~l~~~------------i~~~ 80 (225)
T 1kg2_A 27 DKTPYKVWLSEVMLQQTQVATVIPYFERFM--------------ARFPTVTDLANAPLDEVLHL------------WTGL 80 (225)
T ss_dssp SCCHHHHHHHHHHHTSSCHHHHHHHHHHHH--------------HHCSSHHHHHHSCHHHHHHH------------HTTS
T ss_pred CCCHHHHHHHHHHHCcCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHH------------HHhC
Confidence 489999999999999999999999998875 35899999999999999873 4455
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHHHHHHHH
Q 020295 224 RRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303 (328)
Q Consensus 224 ~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~r 303 (328)
||+ +||+||+++|+.+.++++| +.++++++|++|||||+|||+|||+|++|++ +||||+||+|+++|
T Consensus 81 G~~-~kA~~l~~~a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~Rv~~r 147 (225)
T 1kg2_A 81 GYY-ARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVKRVLAR 147 (225)
T ss_dssp CCT-HHHHHHHHHHHHHHHHSTT-----------SCCCSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHHHHHHH
T ss_pred ChH-HHHHHHHHHHHHHHHHhCC-----------CchHHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHHHHHHH
Confidence 566 5999999999999988765 2345789999999999999999999999995 68999999999999
Q ss_pred cCC-CcccCCCCCHHHHHHHHHHh
Q 020295 304 YLL-PELAGVRLTPKLCSRVAEAF 326 (328)
Q Consensus 304 l~~-~~~~~~~lt~k~y~~i~e~~ 326 (328)
+|+ ........+.+++.++++.|
T Consensus 148 l~~~~~~~~~~~~~~~l~~~~~~~ 171 (225)
T 1kg2_A 148 CYAVSGWPGKKEVENKLWSLSEQV 171 (225)
T ss_dssp HHTCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCccchHHHHHHHHHHH
Confidence 964 32222223445555555555
No 16
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.95 E-value=1.7e-27 Score=216.53 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=127.8
Q ss_pred HHHHHHhcCCcc-CCCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCC
Q 020295 131 AELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGF 209 (328)
Q Consensus 131 ~~l~~~~~G~R~-l~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Gl 209 (328)
...++.+.+++. ..+||||.||++|||||++++++.+++.+|. +.|+.+++++|.++
T Consensus 27 ~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------------------~~l~~~~~eeL~~~-- 84 (214)
T 3fhf_A 27 DKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------------------DGFLTLPREELEEK-- 84 (214)
T ss_dssp HHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------------------THHHHSCHHHHHHH--
T ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------------------HHHHCCCHHHHHHH--
Confidence 334445666663 3489999999999999999999999998872 45888999998773
Q ss_pred CCCCCCccchhhhhh--cchHHHHHHHHHHHHHHHhcCCCchhhhhhhCC-CHHHHHHHhh-cCCCccHHHHHHHHHHhC
Q 020295 210 GYRSAPQSSLLFSVR--RSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKL-DLQEAIDALC-TLPGVGPKVAACIALFSL 285 (328)
Q Consensus 210 g~R~~~~~~li~~v~--~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~-~~~ea~~~L~-~l~GIG~ktAd~vllf~l 285 (328)
|+++| |+++||+||+++|+ + +. .++.+..+ +.++++++|+ ++||||+|||+|||+++
T Consensus 85 ----------Ir~~G~rf~~~KA~~I~~~a~-~------~~-l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~- 145 (214)
T 3fhf_A 85 ----------LKNLGHRFYRKRAEYIVLARR-F------KN-IKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV- 145 (214)
T ss_dssp ----------HHHTTCTTHHHHHHHHHHHGG-G------CC-HHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-
T ss_pred ----------HHHHhhHHHHHHHHHHHHHHH-h------hH-HHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-
Confidence 66767 99999999999998 3 11 23444554 7899999999 99999999999999998
Q ss_pred CCCCccc-cchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 020295 286 DQHHAIP-VDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 327 (328)
Q Consensus 286 g~~d~~P-VDthv~Ri~~rl~~~~~~~~~lt~k~y~~i~e~~~ 327 (328)
++ +.|| ||+||+|+++|+|+.+..++++|++.|.++.+.++
T Consensus 146 g~-~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~ 187 (214)
T 3fhf_A 146 GY-DDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILR 187 (214)
T ss_dssp TC-CSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHH
T ss_pred CC-CCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 77 7888 89999999999998765568899999999988775
No 17
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.94 E-value=6.8e-27 Score=221.00 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhh
Q 020295 145 QDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVR 224 (328)
Q Consensus 145 ~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~ 224 (328)
+||||+||++||+||++++++..++.+|. ..||||++|+++++++|.++ |+++|
T Consensus 47 ~dpfe~LVs~ILsQQts~~~v~~~~~rL~--------------~~fptpe~La~a~~eel~~~------------ir~lG 100 (287)
T 3n5n_X 47 RRAYAVWVSEVMLQQTQVATVINYYTGWM--------------QKWPTLQDLASASLEEVNQL------------WAGLG 100 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------------HHCCSHHHHHTSCHHHHHHH------------HTTSS
T ss_pred CCHHHHHHHHHHhCCCcHHHHHHHHHHHH--------------HHCCCHHHHHcCCHHHHHHH------------HHHcC
Confidence 68999999999999999999999999885 34899999999999999774 56677
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhc-CCCccHHHHHHHHHHhCCCCCccccchHHHHHHHH
Q 020295 225 RSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCT-LPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303 (328)
Q Consensus 225 ~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~-l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~r 303 (328)
|++ ||+||+++|+.+.++|+| . .++.+++|++ |||||+|||+|||+|++|+ ++||||+||+|+++|
T Consensus 101 ~~~-KA~~L~~~A~~i~~~~~g-~----------~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~-p~~~VDt~V~Rv~~R 167 (287)
T 3n5n_X 101 YYS-RGRRLQEGARKVVEELGG-H----------MPRTAETLQQLLPGVGRYTAGAIASIAFGQ-ATGVVDGNVARVLCR 167 (287)
T ss_dssp CHH-HHHHHHHHHHHHHHHSTT-C----------CCSSHHHHHHHSTTCCHHHHHHHHHHHSCC-CCCCCCHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHHHHhCC-C----------CcHHHHHHHHHcCCCCHHHHHHHHHHhcCC-CCccccHHHHHHHHH
Confidence 776 999999999999998875 2 2345889998 9999999999999999999 689999999999999
Q ss_pred cCCCc
Q 020295 304 YLLPE 308 (328)
Q Consensus 304 l~~~~ 308 (328)
+|+.+
T Consensus 168 lg~i~ 172 (287)
T 3n5n_X 168 VRAIG 172 (287)
T ss_dssp HTTCC
T ss_pred hCCCC
Confidence 98754
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.93 E-value=4.2e-26 Score=222.23 Aligned_cols=144 Identities=17% Similarity=0.278 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhh
Q 020295 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSV 223 (328)
Q Consensus 144 ~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v 223 (328)
.+|||++||++||+||++++++..++++|. ..||||++|+++++++|.++ |+++
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~--------------~~~pt~~~la~a~~~~l~~~------------i~~~ 89 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFI--------------DRFPTLEALADADEDEVLKA------------WEGL 89 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHCCSHHHHHTSCHHHHHHT------------TTTS
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHH------------HHhc
Confidence 589999999999999999999999999885 24899999999999999764 4566
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHHHHHHHH
Q 020295 224 RRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 303 (328)
Q Consensus 224 ~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~r 303 (328)
||++ ||+||+++|+.+.++++| +.++++++|++|||||+|||+|||+|++++ ++||||+||+|+++|
T Consensus 90 G~~~-ra~~l~~~a~~~~~~~~g-----------~~p~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Rv~~r 156 (369)
T 3fsp_A 90 GYYS-RVRNLHAAVKEVKTRYGG-----------KVPDDPDEFSRLKGVGPYTVGAVLSLAYGV-PEPAVDGNVMRVLSR 156 (369)
T ss_dssp SCTH-HHHHHHHHHHHHHHHHTT-----------CCCCSHHHHHTSTTCCHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
T ss_pred ChHH-HHHHHHHHHHHHHHHcCC-----------CChhHHHHHhcCCCcCHHHHHHHHHHHCCC-CcccccHHHHHHHHH
Confidence 6776 999999999999998875 335689999999999999999999999999 699999999999999
Q ss_pred cCCCccc-CCCCCHHHHHHHHHHh
Q 020295 304 YLLPELA-GVRLTPKLCSRVAEAF 326 (328)
Q Consensus 304 l~~~~~~-~~~lt~k~y~~i~e~~ 326 (328)
+|+.+.. ....+++...++++.|
T Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3fsp_A 157 LFLVTDDIAKPSTRKRFEQIVREI 180 (369)
T ss_dssp HTTCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCcccCccccchHHHHHHHHHHh
Confidence 9864321 2223445555555544
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.90 E-value=6.9e-24 Score=184.95 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHhhCCCCCcccccccccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhh
Q 020295 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSV 223 (328)
Q Consensus 144 ~~dpfe~Lis~IlsQn~si~~a~~~~~~L~~~G~~~~~~~g~~~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v 223 (328)
..|||+.||++||||||+++++..++.+|. ..||||++|+++++++|.++ |+++
T Consensus 28 ~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~--------------~~~pt~~~la~a~~~el~~~------------i~~l 81 (161)
T 4e9f_A 28 FHDPWKLLIATIFLNRTSGKMAIPVLWKFL--------------EKYPSAEVARTADWRDVSEL------------LKPL 81 (161)
T ss_dssp TTSHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHSCSHHHHTTSCHHHHHHH------------HGGG
T ss_pred cCChHHHHHHHHHHhhCcHHHHHHHHHHHH--------------HHCCCHHHHhccChHhHHhH------------hhhc
Confidence 479999999999999999999999998874 45899999999999999874 8889
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCC-CCccccchHHHHHHH
Q 020295 224 RRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ-HHAIPVDTHVWKIAT 302 (328)
Q Consensus 224 ~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~-~d~~PVDthv~Ri~~ 302 (328)
||+++||++|+++|+.+.. +..++|++|||||+||||+|++||+|. ..++|+|.+++|++.
T Consensus 82 G~y~~KAk~i~~~a~~~vp------------------~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~ 143 (161)
T 4e9f_A 82 GLYDLRAKTIVKFSDEYLT------------------KQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHD 143 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHH------------------SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcCC------------------CChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHH
Confidence 9999999999999987654 224579999999999999999999996 478899999999999
Q ss_pred HcC
Q 020295 303 RYL 305 (328)
Q Consensus 303 rl~ 305 (328)
+++
T Consensus 144 wl~ 146 (161)
T 4e9f_A 144 WLW 146 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=90.82 E-value=1 Score=42.79 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHH
Q 020295 229 QAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 229 KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vll 282 (328)
.|+-|.++.+ . |....++.|+.-..+.....|++++|||||+|.-+--
T Consensus 69 ~A~kI~E~l~---t---G~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~ 116 (335)
T 2fmp_A 69 IAEKIDEFLA---T---GKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116 (335)
T ss_dssp HHHHHHHHHH---H---SSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH---h---CCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHH
Confidence 3555554443 2 3333466666555588999999999999999997643
No 21
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=89.81 E-value=0.21 Score=44.65 Aligned_cols=30 Identities=37% Similarity=0.757 Sum_probs=27.0
Q ss_pred CHHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 258 DLQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 258 ~~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
..+++++.|.+|||||+|+|.=+.++-+.+
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 357899999999999999999999988876
No 22
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=89.24 E-value=0.55 Score=33.88 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred hhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 251 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 251 l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
++.+...+ .++|..++|||+++|..+..+
T Consensus 37 ~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 37 VERVFTAS----VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHHHCC----HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCC----HHHHhcCCCCCHHHHHHHHHH
Confidence 44444443 457999999999999988764
No 23
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=88.98 E-value=1.1 Score=45.79 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=54.9
Q ss_pred CCHHHHhcCCHHHHHhc-CCCCCCCCccchhhhhhcchH--HHHHHH---------HHHHHHHHhcCCCchhhhhhhCCC
Q 020295 191 PSLERLSLVSEVELRNA-GFGYRSAPQSSLLFSVRRSFK--QAKYIT---------GTVDVLQSKHSGGAEWLLSLRKLD 258 (328)
Q Consensus 191 Ptpe~La~~~~e~Lr~~-Glg~R~~~~~~li~~v~~~~~--KA~~I~---------~~A~~i~~~~~gg~~~l~~L~~~~ 258 (328)
-++.+|..++.++|..+ |+|-. ...+|+..+--.+. =.++|. .+|+.+.++|+ +++.|...+
T Consensus 469 ~~~~Dly~L~~~~L~~l~g~geK--sa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~----sl~~l~~a~ 542 (586)
T 4glx_A 469 HTPADLFKLTAGKLTGLERMGPK--SAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG----TLEALEAAS 542 (586)
T ss_dssp SSGGGGGTCCHHHHHTSTTCCHH--HHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC----SHHHHHHCC
T ss_pred CCHHHHhCCCHHHHhcccCccHH--HHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcC----CHHHHHccC
Confidence 46777777788877765 66532 11233332210000 011221 33455555553 366666555
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHHHHHHHHc
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRY 304 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv~Ri~~rl 304 (328)
. ++|.+++|||+++|+.|.-| | -|.+...++.+|
T Consensus 543 ~----e~l~~i~giG~~~A~si~~f-f-------~~~~n~~~i~~L 576 (586)
T 4glx_A 543 I----EELQKVPDVGIVVASHVHNF-F-------AEESNRNVISEL 576 (586)
T ss_dssp H----HHHTTSTTCCHHHHHHHHHH-H-------HSHHHHHHHHHH
T ss_pred H----HHHhcCCCccHHHHHHHHHH-H-------cCHHHHHHHHHH
Confidence 3 57999999999999999876 2 145666666665
No 24
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=88.16 E-value=0.37 Score=43.53 Aligned_cols=29 Identities=41% Similarity=0.681 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
.+++++.|.+|||||+|+|.=+.++-+.+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 47889999999999999999999988877
No 25
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=87.31 E-value=4 Score=35.57 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=90.1
Q ss_pred hccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCCCHHHHhcCCH
Q 020295 124 SASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSE 201 (328)
Q Consensus 124 ~~~D~~l~~l~~~~~G~R~l~-~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fPtpe~La~~~~ 201 (328)
...||.+..-.+.--|..+-. +-.||.|+-.+..+-.|+..|.+-.+.+. .|- .| +|+.+|..++
T Consensus 7 ~~~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~------------~F-d~~~VA~~~e 73 (183)
T 2ofk_A 7 VSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFH------------QF-DPIRIAAMQE 73 (183)
T ss_dssp CCSCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTG------------GG-CHHHHHTCCH
T ss_pred CCCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHc------------CC-CHHHHcCCCH
Confidence 335665555555555776654 67899999999999999999998888776 331 12 7999999999
Q ss_pred HHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHH---hcCCCchhhhhh----------------hCCCH--H
Q 020295 202 VELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQS---KHSGGAEWLLSL----------------RKLDL--Q 260 (328)
Q Consensus 202 e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~---~~~gg~~~l~~L----------------~~~~~--~ 260 (328)
+++..+--..+ +| .++.|.+.+++.|+++.+ ++++=.-.+-.. ...+. +
T Consensus 74 ~~ve~Ll~d~~------II----Rnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~ 143 (183)
T 2ofk_A 74 EDVERLLQNTG------II----RHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASD 143 (183)
T ss_dssp HHHHHHTTCTT------SC----CCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHH
T ss_pred HHHHHHhcCCc------ch----hhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHH
Confidence 99877422111 12 255799999999988764 332200011111 11111 2
Q ss_pred HHHHHhh--cCCCccHHHHHHHHHHhCCC
Q 020295 261 EAIDALC--TLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 261 ea~~~L~--~l~GIG~ktAd~vllf~lg~ 287 (328)
..-+.|. .++=|||-|+..+|. +.|-
T Consensus 144 ~lsk~LKkrGfkFvGpT~~yafmQ-A~G~ 171 (183)
T 2ofk_A 144 ALAKALKKRGFKFVGTTICYSFMQ-ACGL 171 (183)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHH-HTTS
T ss_pred HHHHHHHhCCCeecChHHHHHHHH-HcCc
Confidence 3555666 489999999977665 5553
No 26
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.17 E-value=0.79 Score=34.94 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=22.3
Q ss_pred hhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 251 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 251 l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
++.+...+. ++|.+++|||+++|..+..+
T Consensus 55 ~~~l~~as~----~eL~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 55 LEQLIAASR----EDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HHHHHSCCH----HHHHTSSSCCSHHHHHHHHH
T ss_pred HHHHHhCCH----HHHHhCCCCCHHHHHHHHHH
Confidence 555555554 57899999999999988765
No 27
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.11 E-value=0.79 Score=34.67 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHh
Q 020295 237 VDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 237 A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~ 284 (328)
|+.+.+.++ +++.+...+ .++|.+++|||+++|..+..+-
T Consensus 32 A~~Ll~~fg----sl~~l~~a~----~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 32 SQTLLTTFG----SLEQLIAAS----REDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHTC----BHHHHHHCC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 444555553 245554444 3578999999999999887753
No 28
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=86.91 E-value=0.55 Score=46.30 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=29.8
Q ss_pred cCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHH------------HHHHHHHHhcCC-----Cchhh
Q 020295 189 EFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYIT------------GTVDVLQSKHSG-----GAEWL 251 (328)
Q Consensus 189 ~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~------------~~A~~i~~~~~g-----g~~~l 251 (328)
.|-+..++..++.++||++||+-+ |...|+ +.|..+.++|+. ..+..
T Consensus 537 ~ygs~savr~~pv~elrelg~sd~----------------~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~ 600 (685)
T 4gfj_A 537 KYGSASAVRRLPVEELRELGFSDD----------------EIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSY 600 (685)
T ss_dssp HSSCHHHHHHSCHHHHHTTSCCHH----------------HHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGG
T ss_pred hhccHHHHHhccHHHHHHcCCchh----------------hHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCH
Confidence 466889999999999999999755 233332 334445555542 11122
Q ss_pred hhhhC---------CCHHHHHHHhhcCCCccHHHHHHHHH
Q 020295 252 LSLRK---------LDLQEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 252 ~~L~~---------~~~~ea~~~L~~l~GIG~ktAd~vll 282 (328)
+.|-. --..-+.+.|+.++||||+.|+-++-
T Consensus 601 ~~l~~~g~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~e 640 (685)
T 4gfj_A 601 DDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILE 640 (685)
T ss_dssp GCCSSSCCGGGC----------------------------
T ss_pred HHHhccCCCHHHHHHhcChhHHHhhcccCCCHHHHHHHHH
Confidence 22111 01134678999999999999997753
No 29
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=86.73 E-value=0.72 Score=47.92 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=52.0
Q ss_pred CHHHHhcCCHHHHHhc-CCCCCCCCccchhhhhhcchHH--HHHHHH---------HHHHHHHhcCCCchhhhhhhCCCH
Q 020295 192 SLERLSLVSEVELRNA-GFGYRSAPQSSLLFSVRRSFKQ--AKYITG---------TVDVLQSKHSGGAEWLLSLRKLDL 259 (328)
Q Consensus 192 tpe~La~~~~e~Lr~~-Glg~R~~~~~~li~~v~~~~~K--A~~I~~---------~A~~i~~~~~gg~~~l~~L~~~~~ 259 (328)
++.+|..+..++|..+ |+|-. ...+|+..+--.+.+ .++|.. .|+.+.++|+ +++.+...+.
T Consensus 465 ~~~DL~~L~~e~L~~l~g~G~K--sa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fg----sl~~l~~As~ 538 (667)
T 1dgs_A 465 DVADLYHLRKEDLLGLERMGEK--SAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFG----TMDRLLEASL 538 (667)
T ss_dssp SGGGGGGGCCHHHHTTSSCCST--THHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTS----BHHHHTTCCH
T ss_pred CHHHHHhcCHHHHhcccccchh--hHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcC----CHHHHHhCCH
Confidence 6777777777777664 77643 234455544322221 244443 5666666664 3566665554
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 020295 260 QEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
++|.+++|||+++|+.|.-|
T Consensus 539 ----eeL~~I~GIG~~~A~sI~~f 558 (667)
T 1dgs_A 539 ----EELIEVEEVGELTARAILET 558 (667)
T ss_dssp ----HHHHTSTTCCHHHHHHHHHH
T ss_pred ----HHHHhccCcCHHHHHHHHHH
Confidence 57889999999999999876
No 30
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=86.18 E-value=4.8 Score=35.16 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=91.6
Q ss_pred HhccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhcccCHHHHHHHHHHHH-hhCCCCCcccccccccCCCHHHHhcCC
Q 020295 123 FSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVS 200 (328)
Q Consensus 123 ~~~~D~~l~~l~~~~~G~R~l~-~dpfe~Lis~IlsQn~si~~a~~~~~~L~-~~G~~~~~~~g~~~~~fPtpe~La~~~ 200 (328)
|...||.+..-.+.--|..+-. +-.||.|+-....+-.|+..|.+-.+.++ .|- .| +|+.+|..+
T Consensus 6 W~~~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~------------~F-D~~~VA~~~ 72 (186)
T 2jg6_A 6 FGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFY------------DF-EPEKVAQMT 72 (186)
T ss_dssp TTCCCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTG------------GG-CHHHHTTCC
T ss_pred CCCCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHc------------CC-CHHHHhCCC
Confidence 3345666655555555777654 67899999999999999999999888886 332 12 799999999
Q ss_pred HHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHH---hcCCCchhhh----------------hhhCCCH--
Q 020295 201 EVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQS---KHSGGAEWLL----------------SLRKLDL-- 259 (328)
Q Consensus 201 ~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~---~~~gg~~~l~----------------~L~~~~~-- 259 (328)
++++..+--..+ +| .++.|.+.+++.|+++.+ ++++=.-.+- .+...+.
T Consensus 73 e~dve~Ll~d~g------II----Rnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S 142 (186)
T 2jg6_A 73 AQDIDRLMTFPN------IV----HHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTA 142 (186)
T ss_dssp HHHHHHHTTCTT------SC----CCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHH
T ss_pred HHHHHHHhcCcc------ch----hhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHH
Confidence 999877421111 12 245799999998888753 3322000111 1111111
Q ss_pred HHHHHHhh--cCCCccHHHHHHHHHHhCCC
Q 020295 260 QEAIDALC--TLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 260 ~ea~~~L~--~l~GIG~ktAd~vllf~lg~ 287 (328)
+..-+.|. .++=|||-|+..+|. +.|-
T Consensus 143 ~~lsKdLKkrGFkFvGpt~~YafmQ-A~G~ 171 (186)
T 2jg6_A 143 TQLSKDLKQYGFKFLGPVTVFSFLE-AAGL 171 (186)
T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHH-HTTS
T ss_pred HHHHHHHHHCCCeeechHHHHHHHH-Hhcc
Confidence 24455576 499999999988876 5654
No 31
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.14 E-value=0.9 Score=43.61 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHH
Q 020295 229 QAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 229 KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vl 281 (328)
.|+-|.++.+ . |....++.|+.-+.+.....|++++|||+|+|.-+-
T Consensus 73 ~A~kI~E~l~---t---G~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 73 STRVIQELLE---H---GTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp HHHHHHHHHH---H---SCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHH---c---CChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 3555554443 2 333456667666788899999999999999999764
No 32
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=86.02 E-value=0.8 Score=33.80 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf 283 (328)
.++|.+++|||+++|..+..+
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457899999999999988764
No 33
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=85.70 E-value=0.59 Score=48.56 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCHHHHhcCCHHHHHhc-CCCCCCCCccchhhhhhcchHH--HHHHHH---------HHHHHHHhcCCCchhhhhhhCCC
Q 020295 191 PSLERLSLVSEVELRNA-GFGYRSAPQSSLLFSVRRSFKQ--AKYITG---------TVDVLQSKHSGGAEWLLSLRKLD 258 (328)
Q Consensus 191 Ptpe~La~~~~e~Lr~~-Glg~R~~~~~~li~~v~~~~~K--A~~I~~---------~A~~i~~~~~gg~~~l~~L~~~~ 258 (328)
-++.+|..+..++|..+ |+|-. ...+|+..+-..+.+ .++|.. .|+.+.++|+ +++.|...+
T Consensus 469 ~~~aDL~~L~~~~L~~l~gfG~K--sa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fg----sl~~l~~As 542 (671)
T 2owo_A 469 HTPADLFKLTAGKLTGLERMGPK--SAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG----TLEALEAAS 542 (671)
T ss_dssp SSGGGGGTCCHHHHHTSTTCCHH--HHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC----SHHHHHTCC
T ss_pred CCHHHHHhhCHHHhhcccccchh--HHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcC----CHHHHHhCC
Confidence 36777777777777765 66532 113344333221111 233332 4555555553 356666555
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
.++|.+++|||+++|+.|.-|
T Consensus 543 ----~eeL~~i~GIG~~~A~sI~~f 563 (671)
T 2owo_A 543 ----IEELQKVPDVGIVVASHVHNF 563 (671)
T ss_dssp ----HHHHTTSTTCCHHHHHHHHHH
T ss_pred ----HHHHhhcCCCCHHHHHHHHHH
Confidence 458999999999999999876
No 34
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=85.39 E-value=0.35 Score=43.31 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=21.4
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCCC
Q 020295 262 AIDALCTLPGVGPKVAACIALFSLDQH 288 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~lg~~ 288 (328)
..+.|+++||||+|+|+-|.+---++.
T Consensus 121 d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 121 NVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 357899999999999999987444443
No 35
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=85.25 E-value=1 Score=43.51 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHH
Q 020295 246 GGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 246 gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vll 282 (328)
|....++.|+.-+.+.....|++++|||+|+|.-+--
T Consensus 103 G~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 103 GESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp SSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHH
Confidence 3333567777667888999999999999999997743
No 36
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=85.23 E-value=3.1 Score=39.44 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=43.6
Q ss_pred CCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcc---ccchHHHHHHHHcCCCcccCCCCCHHHHHHH
Q 020295 246 GGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI---PVDTHVWKIATRYLLPELAGVRLTPKLCSRV 322 (328)
Q Consensus 246 gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~---PVDthv~Ri~~rl~~~~~~~~~lt~k~y~~i 322 (328)
|....++.|+. .++ +.+.|++++|||||+|.-+---++.-.+-+ .-.+...+|.-++|- ....+....+..++
T Consensus 80 G~~~~le~l~~-~~p-~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~--~~~~ripr~ea~~i 155 (335)
T 2bcq_A 80 GHLRKLDHISE-SVP-VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYS--DFLERMPREEATEI 155 (335)
T ss_dssp SSCGGGGGCCT-THH-HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTT--GGGCCEEHHHHHHH
T ss_pred CCchHHHHHhh-hhH-HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHH--HhcCCEEHHHHHHH
Confidence 33334556643 445 788888999999999997643222211100 112455566444442 22456777777777
Q ss_pred HHHh
Q 020295 323 AEAF 326 (328)
Q Consensus 323 ~e~~ 326 (328)
++..
T Consensus 156 a~~i 159 (335)
T 2bcq_A 156 EQTV 159 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 37
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=84.88 E-value=1.6 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.4
Q ss_pred HHHHHHhhcCCCccHHHHHHHHH
Q 020295 260 QEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vll 282 (328)
.+....|++++|||||+|-.++-
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~ 111 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYE 111 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHH
Confidence 45788899999999999988765
No 38
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.83 E-value=0.61 Score=34.21 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.3
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf 283 (328)
.+.|.++||||+++|..|+-+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 557899999999999998874
No 39
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=82.41 E-value=0.92 Score=34.59 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
-..+...|..|||||+|.+..+|- -|+-
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~-~FgS 40 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMH-HVKN 40 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHH-HSSC
T ss_pred cccHHHHHHhCCCCCHHHHHHHHH-HcCC
Confidence 367889999999999999998876 4654
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=81.16 E-value=1 Score=40.29 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
..+....|.+++|||||+|..|+- .++-
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils-~~~~ 110 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALA-VHDA 110 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHH-HSCH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHH-hCCH
Confidence 355677899999999999999886 4553
No 41
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.23 E-value=0.65 Score=40.76 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 263 IDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
.++|+++||||+|+|+-|.+.--++
T Consensus 106 ~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 106 ARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999998754344
No 42
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=79.12 E-value=1.1 Score=32.10 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.7
Q ss_pred HHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 263 IDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
.+.|.+|||||+|.+..+|- .||-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSS
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCC
Confidence 46789999999999998776 5665
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.64 E-value=0.7 Score=40.94 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.5
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf 283 (328)
.++|+++||||+|+|+-|.+.
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 568999999999999998763
No 44
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=77.99 E-value=0.54 Score=34.49 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.9
Q ss_pred HHHhhcCCCccHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vl 281 (328)
.++|.+++|||+++++-+.
T Consensus 52 ~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 52 VEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp GGGGGGSTTCCHHHHHHHG
T ss_pred HHHHHhCCCCCHHHHHHHH
Confidence 4468899999999998774
No 45
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=77.55 E-value=0.97 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCccHHHHHHHHH
Q 020295 260 QEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vll 282 (328)
.+....|++++|||||+|..++-
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~ 115 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWL 115 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHH
Confidence 45778899999999999998875
No 46
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=76.43 E-value=1.1 Score=39.21 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 259 LQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 259 ~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
..+....|.+++|||||+|..++- .|+-
T Consensus 67 ek~~f~~L~~v~GIGpk~A~~iL~-~f~~ 94 (191)
T 1ixr_A 67 NLALFELLLSVSGVGPKVALALLS-ALPP 94 (191)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHH-HSCH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHH-hCCh
Confidence 445566899999999999998876 3543
No 47
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=75.79 E-value=4 Score=31.37 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=16.6
Q ss_pred HhhcCCCccHHHHHHHHHHh
Q 020295 265 ALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 265 ~L~~l~GIG~ktAd~vllf~ 284 (328)
+|.+++|||+++++.+.-.+
T Consensus 71 dL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 71 DLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp GGGGSTTCCHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHCc
Confidence 48999999999999876543
No 48
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=74.08 E-value=3.7 Score=35.99 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 237 VDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 237 A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
|+.+.++|++ ++.+...+. ++|..++|||+++|..+.-+
T Consensus 175 a~~Ll~~fgs----~~~l~~a~~----e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 175 AERILERFGS----LERFFTASK----AEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHHHSS----HHHHTTCCH----HHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCC----HHHHHhCCH----HHHhhCCCCCHHHHHHHHHH
Confidence 3444444532 555655554 46899999999999988764
No 49
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=73.92 E-value=2.3 Score=32.04 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHhCC
Q 020295 260 QEAIDALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vllf~lg 286 (328)
......|..+||||+++|.-++- .++
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~-~fg 40 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLT-TFG 40 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHH-HTC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HCC
Confidence 34567888999999999998876 354
No 50
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=73.66 E-value=1.5 Score=34.32 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHhc-CCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCcc
Q 020295 195 RLSLVSEVELRNA-GFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVG 273 (328)
Q Consensus 195 ~La~~~~e~Lr~~-Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG 273 (328)
+|-.++.++|..+ |+|.. +|+.|++ + |+-- .+++|++++|||
T Consensus 19 diNtAs~~eL~~lpGIG~~----------------~A~~IV~-------~--GpF~------------s~edL~~V~Gig 61 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPT----------------LAKLIVK-------N--APYE------------SVEDVLNIPGLT 61 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTH----------------HHHHHHH-------H--CCCS------------SGGGGGGCTTCC
T ss_pred eCCcCCHHHHhHCCCCCHH----------------HHHHHHH-------c--CCCC------------CHHHHHhccCCC
Confidence 3455677778774 88753 6777776 1 2111 245788999999
Q ss_pred HHHHHHHHH
Q 020295 274 PKVAACIAL 282 (328)
Q Consensus 274 ~ktAd~vll 282 (328)
+++.+-+.-
T Consensus 62 ~~~~e~l~~ 70 (97)
T 3arc_U 62 ERQKQILRE 70 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 51
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=73.20 E-value=1.3 Score=36.78 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.4
Q ss_pred HHHhhcCCCccHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vl 281 (328)
.++|+++|||||+.|..|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 5688999999999999998
No 52
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=72.76 E-value=2.6 Score=30.12 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHhCC
Q 020295 260 QEAIDALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vllf~lg 286 (328)
+.....|..+||||+++|.-++- .|+
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~-~fg 35 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLK-HFG 35 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHH-HHC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH-HcC
Confidence 45667899999999999988776 344
No 53
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=72.22 E-value=1.5 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred CHHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 258 DLQEAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 258 ~~~ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
...+....|.+++|||||+|-.+|- .|+-
T Consensus 67 ~ek~~f~~L~~V~GIGpk~A~~iL~-~f~~ 95 (203)
T 1cuk_A 67 QERTLFKELIKTNGVGPKLALAILS-GMSA 95 (203)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHH-HSCH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHh-hCCh
Confidence 3445566899999999999998876 3543
No 54
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=71.38 E-value=1.4 Score=34.55 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.1
Q ss_pred HHHhhcCCCccHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vll 282 (328)
.++|+++||||++.|.-|.-
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 45899999999999999987
No 55
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=71.00 E-value=2.1 Score=33.03 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.3
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vllf 283 (328)
.++|.++||||+++|..|+-+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457899999999999998875
No 56
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=70.62 E-value=3 Score=31.58 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHhCC
Q 020295 260 QEAIDALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vllf~lg 286 (328)
......|..+||||+++|.-++- .|+
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~-~fg 53 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLT-TFG 53 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHH-HHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HCC
Confidence 34566888999999999997765 344
No 57
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=68.40 E-value=1.8 Score=38.34 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHhhcCCCccHHHHHHHHHHh
Q 020295 262 AIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~ 284 (328)
..++|..|||||++.|..|+-+=
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCcCHHHHHHHHHHH
Confidence 34588999999999999998763
No 58
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=67.09 E-value=2.9 Score=32.04 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHH
Q 020295 230 AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 230 A~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vl 281 (328)
+....+++..+.+ |.. .+. --+++..|+|||+++|+.+-
T Consensus 37 ~~~Y~KA~~sLk~-~P~---~i~---------s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 37 RFVFQKALRSLQR-YPL---PLR---------SGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHHHHHHHHHHH-CCS---CCC---------SHHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCC---CCC---------CHHHHHHhhcccHHHHHHHH
Confidence 5566666666665 211 111 13466899999999998763
No 59
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=66.49 E-value=15 Score=29.45 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCccHHHHHHHHHH
Q 020295 261 EAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 261 ea~~~L~~l~GIG~ktAd~vllf 283 (328)
.+.-.|+.|.|||+.+|..||--
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~ 35 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAA 35 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHH
Confidence 35668999999999999999874
No 60
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=63.73 E-value=14 Score=31.04 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHhhcCCCccHHHHHHHHHHh
Q 020295 262 AIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~ 284 (328)
+.-.|+.|+|||+.+|..||-.+
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHc
Confidence 45589999999999999988743
No 61
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.27 E-value=17 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHh
Q 020295 260 QEAIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vllf~ 284 (328)
..+.-.|+.|+|||+.+|..||--+
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHc
Confidence 3467789999999999999988743
No 62
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.98 E-value=15 Score=30.83 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCccHHHHHHHHHH
Q 020295 261 EAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 261 ea~~~L~~l~GIG~ktAd~vllf 283 (328)
.+.-.|+.|+|||+.+|..||--
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~ 42 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRV 42 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHH
Confidence 45678999999999999998864
No 63
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=62.00 E-value=2.5 Score=31.02 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.5
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCC
Q 020295 262 AIDALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~lg 286 (328)
....|..+||||+++|.-++-. |+
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cC
Confidence 4557889999999999887763 44
No 64
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=60.37 E-value=7.6 Score=38.37 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=45.1
Q ss_pred cccCCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHH------------HHHHHHhcCCCchhhhhh
Q 020295 187 FHEFPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGT------------VDVLQSKHSGGAEWLLSL 254 (328)
Q Consensus 187 ~~~fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~------------A~~i~~~~~gg~~~l~~L 254 (328)
...|.|.+.++.+++++|+.-|+|- .||+.|+.+ |..+..+|++ ....
T Consensus 485 LEkFGSVe~Vm~AteDELRedGIGe----------------kqarrI~gl~~l~~~~~d~~~a~elkr~ygs----~sav 544 (685)
T 4gfj_A 485 LKKYGGYSKVREAGVEELREDGLTD----------------AQIRELKGLKTLESIVGDLEKADELKRKYGS----ASAV 544 (685)
T ss_dssp HHHHTSHHHHHHSCHHHHHHTTCCH----------------HHHHHHHTCHHHHHHSSSHHHHHHHHHHSSC----HHHH
T ss_pred HHHhcCHHHHHhCCHHHHHHccccH----------------HHHHHHhhHHHHHHHhcchhhHHHHHHhhcc----HHHH
Confidence 3468899999999999999999984 366666643 3344445532 3344
Q ss_pred hCCCHHHHHH------HhhcCCCccHHH
Q 020295 255 RKLDLQEAID------ALCTLPGVGPKV 276 (328)
Q Consensus 255 ~~~~~~ea~~------~L~~l~GIG~kt 276 (328)
++++.++.++ ++..|+||-.+.
T Consensus 545 r~~pv~elrelg~sd~~ia~ikgip~~~ 572 (685)
T 4gfj_A 545 RRLPVEELRELGFSDDEIAEIKGIPKKL 572 (685)
T ss_dssp HHSCHHHHHTTSCCHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHcCCchhhHHHhcCCcHHH
Confidence 5555555442 445567776554
No 65
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.36 E-value=7.9 Score=36.95 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 229 QAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 229 KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
|+..-.++|..|.+- .. .+..+ ++|.+|||||+++|+.|.=+
T Consensus 39 r~~AYr~Aa~~l~~l-~~---~i~~~---------~~l~~lpGIG~~~A~kI~E~ 80 (360)
T 2ihm_A 39 RLLSFSRAASVLKSL-PC---PVASL---------SQLHGLPYFGEHSTRVIQEL 80 (360)
T ss_dssp HHHHHHHHHHHHHHC-SS---CCCSG---------GGGTTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc---ccCCH---------HHHhcCCCCCHHHHHHHHHH
Confidence 377777888887652 21 22221 13999999999999988755
No 66
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=59.83 E-value=11 Score=30.19 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=25.3
Q ss_pred CchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHh
Q 020295 247 GAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 247 g~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~ 284 (328)
|-.+++.+...+ .+.|..++|||.-.|+-|+--+
T Consensus 45 G~~Tve~va~a~----~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 45 GFHTVEAVAYAP----KKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp CCSSGGGBTSSB----HHHHHTTTTCSTTHHHHHHHHH
T ss_pred CcCcHHHHHhCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 555667666554 6689999999998888876644
No 67
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=58.59 E-value=23 Score=29.95 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCccHHHHHHHHHH
Q 020295 261 EAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 261 ea~~~L~~l~GIG~ktAd~vllf 283 (328)
.+.-.|+.|+|||+.+|..||-.
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~ 49 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKV 49 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHH
T ss_pred EEEEeeecccccCHHHHHHHHHH
Confidence 35668999999999999988864
No 68
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=57.96 E-value=19 Score=26.06 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCCHHHHhcCCHHHHHh-cCCCCCCCCccchhhhhhcchHHHHHHHHHHHH
Q 020295 190 FPSLERLSLVSEVELRN-AGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDV 239 (328)
Q Consensus 190 fPtpe~La~~~~e~Lr~-~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~ 239 (328)
|-|.++|+.++.++|.. .|++ ..||..|+..|+.
T Consensus 28 i~TvedlA~~~~~eL~~i~gis----------------e~kA~~ii~aAr~ 62 (70)
T 1wcn_A 28 VCTLEDLAEQGIDDLADIEGLT----------------DEKAGALIMAARN 62 (70)
T ss_dssp CCSHHHHHTSCHHHHHTSSSCC----------------HHHHHHHHHHHHH
T ss_pred CCcHHHHHcCCHHHHHHccCCC----------------HHHHHHHHHHHHH
Confidence 45999999999999977 4553 4799999999987
No 69
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=57.10 E-value=6.6 Score=37.12 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 230 AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 230 A~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
+..-.++|..|.. +.. .+. + .++|.+|||||+++|+.|.=+
T Consensus 36 ~~AYr~Aa~~l~~-l~~---~i~-----~----~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 36 ALGYAKAINALKS-FHK---PVT-----S----YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHHHHHS-CCS---CCC-----C----HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCc---ccc-----C----HHHHhcCCCccHHHHHHHHHH
Confidence 6667788877764 211 122 1 224999999999999988655
No 70
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=56.85 E-value=8.2 Score=33.73 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 261 EAIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 261 ea~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
.....|..+||||+++|..++-. ++-
T Consensus 159 ~~~~~L~~i~gVg~~~a~~Ll~~-fgs 184 (219)
T 2bgw_A 159 WQLYILQSFPGIGRRTAERILER-FGS 184 (219)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHH-HSS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH-cCC
Confidence 34557889999999999988763 443
No 71
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=56.69 E-value=9.2 Score=36.82 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 229 QAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 229 KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
|+....++|..|.. +.. .+..+ ++|.+|||||+++|+.|-=+
T Consensus 58 rv~AYr~Aa~~l~~-l~~---~i~~~---------~~l~~lpGIG~~ia~kI~E~ 99 (381)
T 1jms_A 58 SCLAFMRASSVLKS-LPF---PITSM---------KDTEGIPCLGDKVKSIIEGI 99 (381)
T ss_dssp HHHHHHHHHHHHHT-CSS---CCCSG---------GGGTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc---cccCH---------HHHhcCCCCcHHHHHHHHHH
Confidence 47777788888765 211 22221 13999999999999988655
No 72
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=54.71 E-value=9.4 Score=36.02 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 229 QAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 229 KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
|+..-.++|..|... .. .+. + .++|.+|||||+++|+.|.=+
T Consensus 35 rv~AYr~Aa~~l~~l-~~---~i~-----~----~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 35 KYNAYRKAASVIAKY-PH---KIK-----S----GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHHHHHHHHHHHHHC-SS---CCC-----C----HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc---ccc-----C----HHHHhcCCCCcHHHHHHHHHH
Confidence 377777888887652 11 122 1 224899999999999988755
No 73
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=50.96 E-value=15 Score=35.40 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHH
Q 020295 236 TVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 236 ~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vl 281 (328)
+|+.+.++|++ ++.+-+.+ .++|.++.|||++.|..|-
T Consensus 327 iae~Lv~~FGs----Lq~Il~AS----~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKT----LDQISKAS----VEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCS----HHHHTTCC----HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCC----HHHHHhCC----HHHHHhccCccHHHHHHHH
Confidence 57888888864 77776665 4578999999999998763
No 74
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=49.25 E-value=3.6 Score=37.35 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCC
Q 020295 262 AIDALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
....|.+||||||++|..++-.+++.
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~gf~s 38 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREAGFES 38 (241)
T ss_dssp --------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHcCCCC
Confidence 34467777777777777666543443
No 75
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=44.38 E-value=36 Score=37.03 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=39.5
Q ss_pred HHhcCCHHHHHhcCCC-CCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCcc
Q 020295 195 RLSLVSEVELRNAGFG-YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVG 273 (328)
Q Consensus 195 ~La~~~~e~Lr~~Glg-~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG 273 (328)
.++.++++++.++|+| |. ..+. .....+.|-.+...+.+.. | +++.... +.+-....|..++|||
T Consensus 661 Elvki~pkdi~sigvg~yQ-----hdv~----q~~L~~~L~~vv~d~VN~v-G--VdiNtA~--~~~~s~~lL~~v~GlG 726 (1030)
T 3psf_A 661 EYANLTSEEVRSLSIHPHQ-----NLLS----SEQLSWALETAFVDIVNLV-S--VEVNKAT--DNNYYASALKYISGFG 726 (1030)
T ss_dssp HHHTSCHHHHHTSCCCTTG-----GGSC----HHHHHHHHHHHHHHHHHHH-C--EEHHHHH--TCHHHHTTGGGSTTCC
T ss_pred HHhccCcccceeeeccccc-----cccC----HHHHHHHHHHHHHhhcccc-C--ccHHHhh--cCcCCHHHHhhCCCCC
Confidence 5667788889999998 43 1111 0112333333333333321 1 2222110 1112366777888888
Q ss_pred HHHHHHHHHH
Q 020295 274 PKVAACIALF 283 (328)
Q Consensus 274 ~ktAd~vllf 283 (328)
|..|..|+-+
T Consensus 727 p~kA~~Iv~~ 736 (1030)
T 3psf_A 727 KRKAIDFLQS 736 (1030)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 76
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=41.08 E-value=55 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCCHHHHhcCCHHHHHhcCCC
Q 020295 190 FPSLERLSLVSEVELRNAGFG 210 (328)
Q Consensus 190 fPtpe~La~~~~e~Lr~~Glg 210 (328)
|-+.+.|..+++++|+++|+.
T Consensus 31 ~d~~~~l~~lt~~DL~~lGI~ 51 (81)
T 1ucv_A 31 YSSLGMVLRMNAQDVRALGIT 51 (81)
T ss_dssp CCBHHHHTTCCHHHHHHHTCC
T ss_pred CChHHHHHHcCHHHHHhCCCC
Confidence 446899999999999999984
No 77
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=41.07 E-value=31 Score=36.45 Aligned_cols=74 Identities=24% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCHHHHHh-cCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHH
Q 020295 199 VSEVELRN-AGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVA 277 (328)
Q Consensus 199 ~~~e~Lr~-~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktA 277 (328)
++.++|.. .|+|.+ ||+.|++--+ ++ |+-. .+++|.+++|||+++-
T Consensus 505 As~~~L~~v~GiG~~----------------~A~~Iv~yR~----~~-G~f~------------sr~~L~~V~giG~k~~ 551 (785)
T 3bzc_A 505 ASAALLARISGLNST----------------LAQNIVAHRD----AN-GAFR------------TRDELKKVSRLGEKTF 551 (785)
T ss_dssp CCHHHHHTSTTCCHH----------------HHHHHHHHHH----HH-CCCS------------SGGGGGGSTTCCHHHH
T ss_pred CCHHHHhhcCCCCHH----------------HHHHHHHHHH----hc-CCCC------------CHHHHHhcCCCCHHHH
Confidence 45666765 588765 7888876422 22 2211 2467889999999998
Q ss_pred HHHHHHhCCCCCccccch---------HHHHHHHHcC
Q 020295 278 ACIALFSLDQHHAIPVDT---------HVWKIATRYL 305 (328)
Q Consensus 278 d~vllf~lg~~d~~PVDt---------hv~Ri~~rl~ 305 (328)
+-+.-|..=.....|.|. .+.+++..++
T Consensus 552 ekl~~FL~i~G~~~pLD~t~VHPEsY~~a~kil~~~g 588 (785)
T 3bzc_A 552 EQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTE 588 (785)
T ss_dssp HHHGGGEECTTSSCGGGGSSCCGGGHHHHHHHHHHHT
T ss_pred HHhhheEEECCcccccccCcCCHHHHHHHHHHHHHcC
Confidence 876655422222345552 3556666654
No 78
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=40.71 E-value=5.8 Score=40.76 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=0.0
Q ss_pred hhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHH
Q 020295 251 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 251 l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf 283 (328)
++.|... ..++|.+++|||+++|+.|.-|
T Consensus 552 le~L~~A----s~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 552 LDAIAAA----STDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ---------------------------------
T ss_pred HHHHHhC----CHHHHhhCCCCCHHHHHHHHHH
Confidence 4555443 3578999999999999999875
No 79
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=40.06 E-value=42 Score=37.17 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHhcCCC-CCCCCccchhhhhhcchHHHHHHHHHHHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCcc
Q 020295 195 RLSLVSEVELRNAGFG-YRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVG 273 (328)
Q Consensus 195 ~La~~~~e~Lr~~Glg-~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG 273 (328)
.++.++++++.++|+| |. ..+. .....+.|-.+...+.+.. | +++.... +.+-....|..++|||
T Consensus 658 Elvki~pkdi~sigvg~yQ-----hdv~----q~~L~~~L~~vv~d~VN~v-G--VdiNtA~--~~~~s~~lL~~v~GlG 723 (1219)
T 3psi_A 658 EYANLTSEEVRSLSIHPHQ-----NLLS----SEQLSWALETAFVDIVNLV-S--VEVNKAT--DNNYYASALKYISGFG 723 (1219)
T ss_dssp HHHHSCHHHHHTSCCCTTG-----GGSC----HHHHHHHHHHHHHHHHHHH-C--EEHHHHT--TCHHHHTTGGGSTTCC
T ss_pred HHhccCcccceeeeccccc-----cccC----HHHHHHHHHHHHHHHHhcc-C--ccHHHhh--cCcCCHHHHHhCCCCC
Confidence 5667788888899998 43 1111 0112333333333333321 1 2222110 1122366777888888
Q ss_pred HHHHHHHHHH
Q 020295 274 PKVAACIALF 283 (328)
Q Consensus 274 ~ktAd~vllf 283 (328)
|..|..|+-+
T Consensus 724 p~kA~~Iv~~ 733 (1219)
T 3psi_A 724 KRKAIDFLQS 733 (1219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 80
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=39.09 E-value=12 Score=30.52 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCccHHHHHHHHH
Q 020295 261 EAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 261 ea~~~L~~l~GIG~ktAd~vll 282 (328)
.+.-.|+.|.|||+.+|..||-
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~ 35 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALE 35 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTT
T ss_pred EeeeehhccccccHHHHHHHHH
Confidence 3566899999999999998876
No 81
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=38.97 E-value=40 Score=26.80 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCHHHHhcCCHHHHHh-cCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHH
Q 020295 190 FPSLERLSLVSEVELRN-AGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQ 241 (328)
Q Consensus 190 fPtpe~La~~~~e~Lr~-~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~ 241 (328)
|-|.+.|+.+++++|.. .|+|- .||.-|++.|+.+.
T Consensus 46 ~~Tve~va~a~~~eL~~i~GIse----------------~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 46 FHTVEAVAYAPKKELINIKGISE----------------AKADKILAEAAKLV 82 (114)
T ss_dssp CSSGGGBTSSBHHHHHTTTTCST----------------THHHHHHHHHHHHS
T ss_pred cCcHHHHHhCCHHHHHHccCCCH----------------HHHHHHHHHHHHHc
Confidence 44778888888888866 57764 48999999998764
No 82
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=38.21 E-value=12 Score=37.80 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=14.9
Q ss_pred HhhcCCCccHHHHHHH
Q 020295 265 ALCTLPGVGPKVAACI 280 (328)
Q Consensus 265 ~L~~l~GIG~ktAd~v 280 (328)
.|.++||||+|||+-|
T Consensus 132 ~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATI 147 (578)
T ss_dssp TTTTSTTCCHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 7889999999999988
No 83
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=36.84 E-value=42 Score=32.36 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=32.7
Q ss_pred cccCCCHHHHhcCCHHHHHhc-CCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHH
Q 020295 187 FHEFPSLERLSLVSEVELRNA-GFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQS 242 (328)
Q Consensus 187 ~~~fPtpe~La~~~~e~Lr~~-Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~ 242 (328)
...|-+.+.+.+++.+||.+. |+|- .||+.|.+....+..
T Consensus 332 v~~FGsLq~Il~AS~eEL~~VeGIGe----------------~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 332 VRMFKTLDQISKASVEDLKKVEGIGE----------------KRARAISESISSLKH 372 (377)
T ss_dssp HHHHCSHHHHTTCCHHHHTTSTTCCH----------------HHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHhCCHHHHHhccCccH----------------HHHHHHHHHHHHHhc
Confidence 346889999999999999884 8883 479999998887764
No 84
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.75 E-value=17 Score=36.67 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.5
Q ss_pred HhhcCCCccHHHHHHHHH
Q 020295 265 ALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 265 ~L~~l~GIG~ktAd~vll 282 (328)
.|.++||||+|||+-+++
T Consensus 129 ~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 129 DLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp GGGGSTTCCHHHHHHHHH
T ss_pred CcccCCCCCccHHHHHHH
Confidence 488999999999998843
No 85
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=33.40 E-value=31 Score=28.46 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=15.4
Q ss_pred HHHhhcCCCccHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vl 281 (328)
.++|++++|||+|+.+.+-
T Consensus 88 vedL~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 88 VEDVLNIPGLTERQKQILR 106 (134)
T ss_dssp GGGGGGCTTCCHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHH
Confidence 4588999999999876553
No 86
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=31.42 E-value=27 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=23.5
Q ss_pred CchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHH
Q 020295 247 GAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 247 g~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vl 281 (328)
|.-.+.+|-..+ .++|++++|+|+|+.+-|.
T Consensus 28 gI~Tv~dL~~~s----~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 28 GINTVQELANKT----EEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp TCCBHHHHHTSC----HHHHHTSTTCCHHHHHHHH
T ss_pred CCCcHHHHHcCC----HHHHHHcCCCCHHHHHHHH
Confidence 455667776665 4579999999999987664
No 87
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=30.93 E-value=10 Score=34.00 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHhhcCCCccHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vll 282 (328)
.++|.++ |||+++|+.|.-
T Consensus 204 ~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 204 VEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp --------------------
T ss_pred HHHHHHc-CCCHHHHHHHHH
Confidence 4567888 888888887653
No 88
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=30.91 E-value=39 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.1
Q ss_pred cCCCHHHHhcCCHHHHHhcCCC
Q 020295 189 EFPSLERLSLVSEVELRNAGFG 210 (328)
Q Consensus 189 ~fPtpe~La~~~~e~Lr~~Glg 210 (328)
.|-+.+.|.+++.++|.++ +|
T Consensus 23 ~Fgs~~~i~~As~eeL~~v-ig 43 (63)
T 2a1j_A 23 HVKNIAELAALSQDELTSI-LG 43 (63)
T ss_dssp HCSSHHHHHTCCHHHHHHH-HS
T ss_pred HcCCHHHHHHCCHHHHHHH-cC
Confidence 4568999999999999987 65
No 89
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=30.27 E-value=71 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.0
Q ss_pred CchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHH
Q 020295 247 GAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 247 g~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vl 281 (328)
|.-.+.+|...+. ++|++++|+|+|+.+-|.
T Consensus 35 gI~Tv~dL~~~se----~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 35 GINTVQELANKTE----EDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp TCCBHHHHTTCCH----HHHTTSTTCHHHHHHHHH
T ss_pred CCCCHHHHHhCCH----HHHHHcCCCCHhHHHHHH
Confidence 4556777776654 479999999999998774
No 90
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=30.12 E-value=28 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHhhcCCCccHHHHHHHH
Q 020295 262 AIDALCTLPGVGPKVAACIA 281 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vl 281 (328)
....|..|||||+++|..++
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll 185 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLI 185 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHH
T ss_pred ccccccCCCCcCHHHHHHHH
No 91
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=29.13 E-value=19 Score=20.81 Aligned_cols=10 Identities=60% Similarity=1.192 Sum_probs=6.7
Q ss_pred CCCCCCCCCc
Q 020295 18 PQPPPTPPNP 27 (328)
Q Consensus 18 ~~~~~~~~~~ 27 (328)
-|||.+|||.
T Consensus 8 vqppapppna 17 (26)
T 2lkw_A 8 VQPPAPPPNA 17 (26)
T ss_pred ccCCCcCCCe
Confidence 4677777774
No 92
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=28.93 E-value=1.6e+02 Score=21.11 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCHHHHhcCCHHHHHhcCCCCCCCCccchhhhhhcchHHHHHHHHHHHHHHH
Q 020295 190 FPSLERLSLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQS 242 (328)
Q Consensus 190 fPtpe~La~~~~e~Lr~~Glg~R~~~~~~li~~v~~~~~KA~~I~~~A~~i~~ 242 (328)
|-|.+.++.++.++|-+. -||...|+.-|+..|+.+..
T Consensus 27 f~tve~vA~~~~~eL~~I---------------~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 27 FSTLEELAYVPMKELLEI---------------EGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CCCHHHHHHSCHHHHTTS---------------TTCCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHcCCHHHHhhc---------------cCCCHHHHHHHHHHHHHHHH
Confidence 669999999999999763 13456799999999887654
No 93
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=26.13 E-value=27 Score=32.30 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=14.8
Q ss_pred hhcCCCccHHHHHHHHHHhCCC
Q 020295 266 LCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 266 L~~l~GIG~ktAd~vllf~lg~ 287 (328)
+-.+||||+|||--++- -+|-
T Consensus 205 iPGVpGIG~KTA~kLL~-~~gs 225 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIR-EFGN 225 (290)
T ss_dssp BCCCTTCCHHHHHHHHH-HHCS
T ss_pred CCCCCcCCHhHHHHHHH-HcCC
Confidence 34689999999976654 3443
No 94
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.93 E-value=37 Score=31.12 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCccHHHHHHHHH
Q 020295 260 QEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 260 ~ea~~~L~~l~GIG~ktAd~vll 282 (328)
+.....|++||||+++.|..|+-
T Consensus 233 e~~~~mL~~IpGVs~~~A~~I~~ 255 (311)
T 2ziu_A 233 EVFARQLMQISGVSGDKAAAVLE 255 (311)
T ss_dssp HHHHHHHTTBTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHH
Confidence 45678999999999999999986
No 95
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=25.92 E-value=1.8e+02 Score=22.68 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=8.7
Q ss_pred cCCCCcccceecCCceEEEeE
Q 020295 54 FPTGQTFRWKKTGPLQYTGPI 74 (328)
Q Consensus 54 l~~GQ~Frw~~~~~~~~~g~~ 74 (328)
|.-|..+.--+.+++||.|..
T Consensus 78 f~~Gd~i~vl~~~~gWw~g~~ 98 (119)
T 2rqr_A 78 LQIGDVVRIQETCGDWYRGYL 98 (119)
T ss_dssp BCTTCEEEEEEEETTEEEEEE
T ss_pred CcCCCEEEEEEcCCCEEEEEE
Confidence 344444432222234555544
No 96
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=24.80 E-value=1.9e+02 Score=26.79 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=9.0
Q ss_pred cCCCHHHHhcCCHHHHH
Q 020295 189 EFPSLERLSLVSEVELR 205 (328)
Q Consensus 189 ~fPtpe~La~~~~e~Lr 205 (328)
.|-+...+.+.+.+++.
T Consensus 373 hfesiagilatdleeie 389 (519)
T 2csb_A 373 HFESIAGILATDLEEIE 389 (519)
T ss_dssp HHSSHHHHHTSCHHHHH
T ss_pred HHHHHHHHHhccHHHHH
Confidence 34455555555555553
No 97
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=24.40 E-value=1.2e+02 Score=21.63 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.6
Q ss_pred CchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHh
Q 020295 247 GAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 284 (328)
Q Consensus 247 g~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~ 284 (328)
|..+++.|...+ .++|..++||+...|+-+.+-+
T Consensus 27 Gi~TvedlA~~~----~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 27 GVCTLEDLAEQG----IDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp TCCSHHHHHTSC----HHHHHTSSSCCHHHHHHHHHHH
T ss_pred CCCcHHHHHcCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 677888887775 4577889999999998887643
No 98
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.63 E-value=46 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=17.4
Q ss_pred HHhhcCCCccHHHHHHHHHHhCC
Q 020295 264 DALCTLPGVGPKVAACIALFSLD 286 (328)
Q Consensus 264 ~~L~~l~GIG~ktAd~vllf~lg 286 (328)
..|..||+||++++......|..
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~ 26 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIK 26 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCC
T ss_pred HHhhcCCCCCHHHHHHHHHcCCC
Confidence 36788999999998877665544
No 99
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=23.35 E-value=33 Score=32.34 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.0
Q ss_pred cCCCccHHHHHHHHH
Q 020295 268 TLPGVGPKVAACIAL 282 (328)
Q Consensus 268 ~l~GIG~ktAd~vll 282 (328)
.+||||+|||--++-
T Consensus 236 gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ 250 (341)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 589999999965553
No 100
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=22.26 E-value=30 Score=38.36 Aligned_cols=22 Identities=23% Similarity=0.006 Sum_probs=16.8
Q ss_pred HHHHhhcCCCccHHHHHHHHHH
Q 020295 262 AIDALCTLPGVGPKVAACIALF 283 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf 283 (328)
.+++|.+++|||+||-+-..-|
T Consensus 743 sr~~L~~v~~iG~k~fe~~agf 764 (1219)
T 3psi_A 743 ARQQLITHNILHKTIFMNSAGF 764 (1219)
T ss_dssp CTTHHHHTTCSCHHHHHHHGGG
T ss_pred CHHHHhhCCCccHHHHHhcccc
Confidence 3568889999999997655443
No 101
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=21.94 E-value=24 Score=38.45 Aligned_cols=20 Identities=15% Similarity=-0.150 Sum_probs=15.9
Q ss_pred HHHhhcCCCccHHHHHHHHH
Q 020295 263 IDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 263 ~~~L~~l~GIG~ktAd~vll 282 (328)
++.|.+++|||+|+-+-..-
T Consensus 747 r~~L~~v~~iG~k~fe~~ag 766 (1030)
T 3psf_A 747 RQQLITHNILHKTIFMNSAG 766 (1030)
T ss_dssp TTHHHHTTSSCHHHHHHHTT
T ss_pred HHHHHhcCCccHHHHHhccC
Confidence 56888999999999765543
No 102
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=21.73 E-value=51 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=23.1
Q ss_pred CchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHH
Q 020295 247 GAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 282 (328)
Q Consensus 247 g~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vll 282 (328)
|.-.+.+|-..+ .++|++++|+|+|+.+-|.-
T Consensus 31 gI~Tv~dL~~~s----e~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 31 AIHYIGDLVQRT----EVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp TCCBHHHHHHSC----HHHHHTSTTCCHHHHHHHHH
T ss_pred CCCcHHHHHhCC----HHHHhhccccCcccHHHHHH
Confidence 444566655554 45799999999999988753
No 103
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=21.72 E-value=48 Score=29.25 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCchhhhhhhCCCHHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccchHH
Q 020295 237 VDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHV 297 (328)
Q Consensus 237 A~~i~~~~~gg~~~l~~L~~~~~~ea~~~L~~l~GIG~ktAd~vllf~lg~~d~~PVDthv 297 (328)
-+.|.++|+| ..+.+++..-+++=|-|-|||=-|.+++.+- -.+|+|.+|
T Consensus 119 eR~is~kfGG----------~~p~eiiA~tLR~fgqG~KV~vEi~lMAaDA-GlIp~geeV 168 (206)
T 1t57_A 119 GRGISNRFGG----------VTPVEIMAETLRMVSQGFKVCVEIAIMAADA-GLIPVDEEV 168 (206)
T ss_dssp HHHHHHHHCS----------CCHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-TSSCSSSCE
T ss_pred hHHHHHhcCC----------CCHHHHHHHHHHHhCCCceEEEEEeeeeecC-CCCCCCCeE
Confidence 3455666765 3567777777779999999998888889875 677887654
No 104
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.49 E-value=20 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCCCCc
Q 020295 262 AIDALCTLPGVGPKVAACIALFSLDQHHA 290 (328)
Q Consensus 262 a~~~L~~l~GIG~ktAd~vllf~lg~~d~ 290 (328)
....|..|||||+++|..++- .||-.+.
T Consensus 171 ~~s~L~~IpGIG~k~ak~Ll~-~FGSl~~ 198 (226)
T 3c65_A 171 FHSVLDDIPGVGEKRKKALLN-YFGSVKK 198 (226)
T ss_dssp -----------------------------
T ss_pred ccccccccCCCCHHHHHHHHH-HhCCHHH
Confidence 456788999999999997766 4665443
No 105
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.01 E-value=29 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHhhcCCCccHHHHHHHHHHhCCC
Q 020295 264 DALCTLPGVGPKVAACIALFSLDQ 287 (328)
Q Consensus 264 ~~L~~l~GIG~ktAd~vllf~lg~ 287 (328)
..|..||+||++++...-..|...
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t 27 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKT 27 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCC
Confidence 467888999999888777665554
Done!