RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020295
(328 letters)
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 111 bits (279), Expect = 4e-31
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 35 PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIH 94
P+ W + +SEL L L P+GQ+FRW++ P ++G + + +L + ++
Sbjct: 9 PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQ-TEEQLHCTVY 67
Query: 95 ------TSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ 145
S P A+ + + ++L +L+ + + D F E+A+ G R+LRQ
Sbjct: 68 RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 108 bits (270), Expect = 4e-29
Identities = 70/188 (37%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 146 DPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHEFPSLERLSLVS-EVE 203
DP+ECL F+CSSNNNIARIT MV+ L G L ++ +H FPSL+ L+ E
Sbjct: 1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 60
Query: 204 LRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAI 263
LR G GYR A+Y++ + + + G WL LR+ +EA
Sbjct: 61 LRKLGLGYR-----------------ARYVSASARAILEEQGGL-AWLQQLRESSYEEAH 102
Query: 264 DALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLL---PELAGVRLTPKLCS 320
ALC LPGVG +VA CI L +LD+ A+PVD H+W IA R +P+
Sbjct: 103 KALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNK 162
Query: 321 RVAEAFCE 328
+ F
Sbjct: 163 ELGNFFRS 170
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
(gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 183
Score = 64.0 bits (155), Expect = 8e-13
Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 35/190 (18%)
Query: 139 GARVLRQ-DPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGNVEGFEFHEFPSLERL 196
G R+ D E ++ + ++A K+ G L + E+ FP+ +RL
Sbjct: 5 GLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD--FPEYICFPTPQRL 62
Query: 197 SLVSEVELRNAGFGYRSAPQSSLLFSVRRSFKQAKYITGTVDVLQSKHSGGAEWLLSLRK 256
+ L+ G + +A+ + + L
Sbjct: 63 AAADPQALKALGMPLK----------------RAEALIHLANAALEG------TLPMTIP 100
Query: 257 LDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTP 316
D+++A+ L T PG+G A AL D ++ K +TP
Sbjct: 101 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFP---------GMTP 151
Query: 317 KLCSRVAEAF 326
R AE +
Sbjct: 152 AQIRRYAERW 161
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 36.0 bits (83), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 259 LQEAIDALCTLPGVGPKVAACIALFSLDQ 287
L I L LPG+GPK A +A +Q
Sbjct: 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 28.5 bits (64), Expect = 0.21
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 260 QEAIDALCTLPGVGPKVAACIAL 282
+ +L +PG+G + A I L
Sbjct: 40 DSDVASLTRVPGIGRRGAERIVL 62
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle
domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 28.6 bits (64), Expect = 0.23
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 260 QEAIDALCTLPGVGPKVAACIAL 282
+E + AL LPG+G K A + +
Sbjct: 40 REEVGALVKLPGIGKKTAERLIV 62
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 27.4 bits (61), Expect = 0.57
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 259 LQEAIDALCTLPGVGPKVAACIAL 282
L+ L + GVG ++A IAL
Sbjct: 40 LEGDARLLTSASGVGRRLAERIAL 63
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 28.9 bits (65), Expect = 0.67
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 261 EAI-DALCTLPGVGPKVAACIALFSLDQHHAIPVD 294
EAI +AL +L G G KV I + + D IP++
Sbjct: 115 EAIAEALRSLFGHGLKVCVEITIMAADSGA-IPIE 148
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 186
Score = 27.8 bits (62), Expect = 1.5
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 261 EAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIA 301
E + + G KV IA+ + D IPVD V I
Sbjct: 113 EIMAETLRMVSQGFKVCVEIAIMAADAGL-IPVDEEVIAIG 152
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 27.2 bits (60), Expect = 1.8
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 129 RFAELAKYLAGARVLRQDPVECL---LQFLCSSNNN 161
+F E + +A ++ + D ++CL L ++ S N
Sbjct: 110 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFN 145
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 27.2 bits (59), Expect = 2.5
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 264 DALCTLPGVGPKVAACIALFSLDQHH 289
+ L + VG A I D
Sbjct: 139 EELIEVEEVGELTARAILETLKDPAF 164
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 25.5 bits (56), Expect = 2.6
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 258 DLQEA-IDALCTLPGVGPKVAACIA 281
D++E + L + PG+G + A I
Sbjct: 6 DVREWQLYILQSFPGIGRRTAERIL 30
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 24.7 bits (54), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 256 KLDLQEA-IDALCTLPGVGPKVAACIA 281
+ L EA ++ L LPG+GP +A I
Sbjct: 8 PVSLNEASLEELMALPGIGPVLARRIV 34
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 25.6 bits (56), Expect = 8.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 21 PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKK 64
P P PQ KPSKW P + +LS +++ WK
Sbjct: 28 PAKPKVPQ----KKPSKWDPPAEFKVDLSTAVSYNDIGDINWKN 67
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 25.6 bits (55), Expect = 8.1
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 253 SLRKLDLQEAIDALCTLPGVGPKVAACIA 281
S ++DL I GVGP +
Sbjct: 2 SGEEVDLSTDIQ---YAKGVGPNRKKKLK 27
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 25.5 bits (54), Expect = 9.5
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 16 LTPQPPPTPPNPQTLTTNKPSKWTPLNLT-QSELSLPLTFPTG 57
LT P T P +T P L +++P+ G
Sbjct: 340 LTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGG 382
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,204,956
Number of extensions: 53682
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 17
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)