Query 020296
Match_columns 328
No_of_seqs 313 out of 1650
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534 NADH-cytochrome b-5 re 100.0 1.6E-54 3.5E-59 386.1 27.6 244 67-328 40-286 (286)
2 PTZ00274 cytochrome b5 reducta 100.0 1.1E-48 2.5E-53 361.0 29.0 253 73-328 47-325 (325)
3 PTZ00319 NADH-cytochrome B5 re 100.0 5.5E-45 1.2E-49 334.7 28.4 244 69-328 24-300 (300)
4 cd06183 cyt_b5_reduct_like Cyt 100.0 3.5E-43 7.6E-48 312.2 25.7 229 81-328 1-234 (234)
5 PLN02252 nitrate reductase [NA 100.0 7.5E-43 1.6E-47 356.7 27.9 240 70-328 626-888 (888)
6 cd06188 NADH_quinone_reductase 100.0 1.5E-42 3.2E-47 317.0 24.0 242 71-327 3-280 (283)
7 cd06217 FNR_iron_sulfur_bindin 100.0 4.6E-42 9.9E-47 305.4 26.2 230 78-327 1-232 (235)
8 cd06211 phenol_2-monooxygenase 100.0 8.6E-42 1.9E-46 304.4 26.1 229 76-327 4-235 (238)
9 cd06215 FNR_iron_sulfur_bindin 100.0 6.9E-42 1.5E-46 303.5 25.0 226 81-327 1-228 (231)
10 cd06210 MMO_FAD_NAD_binding Me 100.0 9.4E-42 2E-46 303.7 25.5 225 80-327 3-232 (236)
11 cd06189 flavin_oxioreductase N 100.0 6.3E-42 1.4E-46 302.5 23.7 220 81-327 1-221 (224)
12 PRK11872 antC anthranilate dio 100.0 1.2E-41 2.5E-46 318.3 26.6 228 75-327 103-332 (340)
13 cd06184 flavohem_like_fad_nad_ 100.0 2.2E-41 4.8E-46 303.3 26.8 233 74-327 2-240 (247)
14 cd06191 FNR_iron_sulfur_bindin 100.0 2.1E-41 4.5E-46 300.5 24.8 225 81-327 1-228 (231)
15 cd06209 BenDO_FAD_NAD Benzoate 100.0 4.8E-41 1.1E-45 297.6 25.8 221 80-327 3-224 (228)
16 PRK07609 CDP-6-deoxy-delta-3,4 100.0 3E-41 6.5E-46 316.0 25.6 228 75-327 99-329 (339)
17 cd06212 monooxygenase_like The 100.0 7.6E-41 1.7E-45 297.1 25.7 224 80-327 2-228 (232)
18 cd06216 FNR_iron_sulfur_bindin 100.0 2.9E-40 6.3E-45 295.4 27.5 225 75-327 14-240 (243)
19 PRK08051 fre FMN reductase; Va 100.0 1.3E-40 2.9E-45 295.6 24.2 223 78-327 2-226 (232)
20 PRK10684 HCP oxidoreductase, N 100.0 1.7E-40 3.6E-45 309.9 25.7 224 78-327 9-234 (332)
21 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 2E-40 4.2E-45 312.0 26.0 229 78-327 1-238 (352)
22 PRK13289 bifunctional nitric o 100.0 2.6E-40 5.6E-45 316.3 26.7 233 74-327 150-389 (399)
23 cd06195 FNR1 Ferredoxin-NADP+ 100.0 3.3E-40 7.1E-45 294.7 23.9 223 82-327 1-238 (241)
24 cd06214 PA_degradation_oxidore 100.0 5.8E-40 1.3E-44 293.0 25.3 229 78-327 1-237 (241)
25 cd06187 O2ase_reductase_like T 100.0 4.4E-40 9.5E-45 290.6 24.2 220 83-327 1-221 (224)
26 PRK08345 cytochrome-c3 hydroge 100.0 4E-40 8.7E-45 301.4 24.5 227 74-327 1-243 (289)
27 COG1018 Hmp Flavodoxin reducta 100.0 2.3E-39 4.9E-44 290.7 27.0 224 75-327 2-227 (266)
28 cd00322 FNR_like Ferredoxin re 100.0 8.6E-40 1.9E-44 288.0 23.6 220 85-327 2-222 (223)
29 cd06190 T4MO_e_transfer_like T 100.0 1E-39 2.2E-44 289.9 24.1 221 83-327 1-228 (232)
30 cd06213 oxygenase_e_transfer_s 100.0 2.5E-39 5.4E-44 286.5 25.2 219 80-327 2-224 (227)
31 PRK05464 Na(+)-translocating N 100.0 2.7E-39 6E-44 309.4 25.0 236 78-327 133-404 (409)
32 cd06194 FNR_N-term_Iron_sulfur 100.0 7.4E-39 1.6E-43 282.5 23.7 215 83-327 1-218 (222)
33 PTZ00306 NADH-dependent fumara 100.0 5.7E-39 1.2E-43 340.1 27.2 241 67-327 903-1160(1167)
34 TIGR01941 nqrF NADH:ubiquinone 100.0 6.8E-39 1.5E-43 306.3 23.6 236 78-327 129-400 (405)
35 cd06196 FNR_like_1 Ferredoxin 100.0 1.5E-38 3.2E-43 279.8 23.2 215 80-327 2-217 (218)
36 cd06221 sulfite_reductase_like 100.0 1.3E-38 2.9E-43 286.2 23.4 218 83-327 1-221 (253)
37 PRK10926 ferredoxin-NADP reduc 100.0 3.6E-38 7.7E-43 282.5 25.9 220 77-322 3-233 (248)
38 PLN03116 ferredoxin--NADP+ red 100.0 3.2E-38 7E-43 291.1 25.1 238 72-321 18-288 (307)
39 PRK08221 anaerobic sulfite red 100.0 5E-38 1.1E-42 283.8 23.4 214 80-327 9-223 (263)
40 PRK05713 hypothetical protein; 100.0 1.2E-37 2.6E-42 288.2 23.2 213 78-327 91-305 (312)
41 TIGR02911 sulfite_red_B sulfit 100.0 8E-37 1.7E-41 275.7 23.7 216 77-327 5-221 (261)
42 COG0543 UbiB 2-polyprenylpheno 100.0 1.1E-36 2.3E-41 273.0 24.0 210 80-322 9-218 (252)
43 cd06208 CYPOR_like_FNR These f 100.0 1E-36 2.2E-41 278.7 23.5 221 75-299 5-255 (286)
44 cd06198 FNR_like_3 NAD(P) bind 100.0 2.7E-36 5.9E-41 265.0 23.2 206 90-327 6-212 (216)
45 PLN03115 ferredoxin--NADP(+) r 100.0 2.5E-36 5.4E-41 282.0 22.9 219 75-299 87-335 (367)
46 cd06185 PDR_like Phthalate dio 100.0 5.8E-35 1.3E-39 255.6 21.7 204 84-327 1-207 (211)
47 cd06201 SiR_like2 Cytochrome p 100.0 1.3E-34 2.9E-39 264.9 22.7 203 75-299 42-261 (289)
48 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.2E-34 2.6E-39 259.5 21.7 205 83-322 1-206 (246)
49 PRK06222 ferredoxin-NADP(+) re 100.0 1.5E-34 3.3E-39 263.5 21.9 204 81-321 2-206 (281)
50 cd06219 DHOD_e_trans_like1 FAD 100.0 1.7E-34 3.7E-39 258.8 21.0 204 81-321 1-205 (248)
51 cd06192 DHOD_e_trans_like FAD/ 100.0 2.8E-34 6E-39 256.8 22.2 207 83-326 1-207 (243)
52 COG4097 Predicted ferric reduc 100.0 2.1E-34 4.5E-39 258.8 20.1 217 77-326 214-431 (438)
53 cd06182 CYPOR_like NADPH cytoc 100.0 5.3E-34 1.1E-38 257.9 19.8 195 91-299 15-231 (267)
54 TIGR03224 benzo_boxA benzoyl-C 100.0 1.6E-33 3.4E-38 268.7 22.7 219 72-299 136-379 (411)
55 cd06220 DHOD_e_trans_like2 FAD 100.0 2.3E-33 5E-38 249.3 21.4 194 82-326 2-196 (233)
56 PRK00054 dihydroorotate dehydr 100.0 3.8E-33 8.3E-38 250.4 22.7 202 77-320 3-205 (250)
57 PRK05802 hypothetical protein; 100.0 6.6E-33 1.4E-37 256.2 23.1 204 75-299 61-270 (320)
58 cd06197 FNR_like_2 FAD/NAD(P) 100.0 4.2E-33 9.2E-38 245.3 19.1 183 85-299 2-206 (220)
59 cd06193 siderophore_interactin 100.0 6.5E-33 1.4E-37 246.7 18.3 214 83-327 1-230 (235)
60 COG2871 NqrF Na+-transporting 100.0 6E-33 1.3E-37 241.1 16.3 243 69-326 126-404 (410)
61 cd06200 SiR_like1 Cytochrome p 100.0 6.5E-32 1.4E-36 241.6 20.4 190 92-299 17-219 (245)
62 PRK12778 putative bifunctional 100.0 1.3E-30 2.8E-35 267.1 22.1 204 81-321 2-206 (752)
63 PRK12779 putative bifunctional 100.0 2.1E-29 4.6E-34 261.0 24.9 216 76-322 646-873 (944)
64 cd06186 NOX_Duox_like_FAD_NADP 100.0 3.1E-28 6.7E-33 212.9 19.3 178 85-299 3-192 (210)
65 PRK12775 putative trifunctiona 100.0 1.4E-27 3.1E-32 249.3 22.9 202 81-320 2-205 (1006)
66 PLN02292 ferric-chelate reduct 100.0 2.4E-27 5.2E-32 236.2 23.1 203 79-294 325-548 (702)
67 cd06207 CyPoR_like NADPH cytoc 99.9 8.2E-27 1.8E-31 221.5 15.9 165 129-299 161-346 (382)
68 cd06206 bifunctional_CYPOR The 99.9 5.2E-27 1.1E-31 223.0 12.2 179 107-299 146-344 (384)
69 cd06203 methionine_synthase_re 99.9 1.7E-26 3.7E-31 220.1 14.7 169 129-299 171-362 (398)
70 cd06199 SiR Cytochrome p450- l 99.9 1.5E-26 3.1E-31 217.9 13.5 179 106-300 130-325 (360)
71 cd06202 Nitric_oxide_synthase 99.9 5.1E-25 1.1E-29 210.4 16.5 166 130-299 175-366 (406)
72 TIGR01931 cysJ sulfite reducta 99.9 1.7E-25 3.8E-30 222.6 12.9 178 106-299 367-561 (597)
73 cd06204 CYPOR NADPH cytochrome 99.9 4.6E-25 1E-29 211.3 14.8 166 129-299 175-380 (416)
74 PLN02631 ferric-chelate reduct 99.9 3.9E-23 8.4E-28 205.8 20.5 170 80-259 309-492 (699)
75 PRK06214 sulfite reductase; Pr 99.9 1.8E-23 3.9E-28 203.6 17.6 163 130-299 314-494 (530)
76 PLN02844 oxidoreductase/ferric 99.9 1.6E-22 3.4E-27 202.4 22.7 197 82-294 315-537 (722)
77 PRK10953 cysJ sulfite reductas 99.9 3.5E-23 7.5E-28 205.4 13.9 179 106-299 370-564 (600)
78 KOG3378 Globins and related he 99.9 2.3E-22 5.1E-27 174.0 9.3 217 73-327 144-377 (385)
79 PF00175 NAD_binding_1: Oxidor 99.9 4E-22 8.7E-27 155.8 9.4 105 193-299 1-108 (109)
80 PF00970 FAD_binding_6: Oxidor 99.9 3.5E-21 7.7E-26 148.1 11.7 98 80-183 1-99 (99)
81 COG0369 CysJ Sulfite reductase 99.8 4.2E-19 9E-24 174.2 14.0 162 130-299 371-551 (587)
82 KOG0039 Ferric reductase, NADH 99.8 1.1E-18 2.4E-23 174.7 17.3 214 78-302 354-628 (646)
83 KOG1158 NADP/FAD dependent oxi 99.7 7.2E-18 1.6E-22 165.5 12.0 166 130-300 420-610 (645)
84 COG2375 ViuB Siderophore-inter 99.7 3.8E-15 8.2E-20 131.5 20.0 218 75-326 14-252 (265)
85 PRK06567 putative bifunctional 99.6 7.1E-15 1.5E-19 150.1 18.5 133 78-224 790-923 (1028)
86 KOG1159 NADP-dependent flavopr 99.6 1.5E-14 3.2E-19 135.0 10.6 157 130-299 366-539 (574)
87 PF08030 NAD_binding_6: Ferric 99.5 2.1E-14 4.5E-19 119.4 7.5 112 188-299 1-152 (156)
88 PF08021 FAD_binding_9: Sidero 99.1 1.8E-10 4E-15 90.9 8.5 100 82-181 1-117 (117)
89 PF08022 FAD_binding_8: FAD-bi 99.1 4.2E-12 9.2E-17 98.5 -1.5 91 80-180 3-103 (105)
90 PF04954 SIP: Siderophore-inte 97.7 0.00029 6.3E-09 55.7 9.0 110 189-327 2-112 (119)
91 COG1465 Predicted alternative 76.3 14 0.00031 33.6 7.6 93 77-179 198-294 (376)
92 PF02662 FlpD: Methyl-viologen 73.3 4 8.6E-05 32.4 3.2 76 242-327 22-98 (124)
93 PRK12446 undecaprenyldiphospho 70.4 6 0.00013 37.3 4.3 25 189-213 2-28 (352)
94 PF09345 DUF1987: Domain of un 66.8 43 0.00094 25.4 7.5 59 200-258 27-89 (99)
95 PRK02290 3-dehydroquinate synt 57.5 56 0.0012 30.6 7.8 111 75-196 164-284 (344)
96 PF01959 DHQS: 3-dehydroquinat 57.0 55 0.0012 30.8 7.7 95 75-180 174-273 (354)
97 PLN02844 oxidoreductase/ferric 56.5 7.4 0.00016 40.3 2.2 23 282-304 674-696 (722)
98 COG1154 Dxs Deoxyxylulose-5-ph 54.3 49 0.0011 33.4 7.3 114 187-325 500-614 (627)
99 COG1908 FrhD Coenzyme F420-red 53.2 39 0.00085 26.6 5.1 63 244-327 25-99 (132)
100 PF00677 Lum_binding: Lumazine 51.3 55 0.0012 23.9 5.6 77 80-175 7-83 (85)
101 PLN02631 ferric-chelate reduct 50.1 11 0.00023 39.0 2.1 22 282-303 662-683 (699)
102 PLN02292 ferric-chelate reduct 49.6 11 0.00023 39.1 2.0 22 282-303 665-686 (702)
103 PRK00036 primosomal replicatio 49.5 68 0.0015 24.7 5.9 35 146-180 44-78 (107)
104 PF00667 FAD_binding_1: FAD bi 48.6 15 0.00034 31.9 2.7 26 129-154 176-202 (219)
105 PRK07021 fliL flagellar basal 44.6 1.3E+02 0.0028 24.8 7.5 10 44-53 32-41 (162)
106 KOG1611 Predicted short chain- 44.3 99 0.0022 27.4 6.8 54 192-252 6-60 (249)
107 COG3967 DltE Short-chain dehyd 43.4 87 0.0019 27.4 6.2 57 189-252 6-83 (245)
108 PF01272 GreA_GreB: Transcript 43.0 57 0.0012 23.1 4.5 63 107-183 5-70 (77)
109 PRK01885 greB transcription el 42.9 44 0.00095 27.6 4.4 61 108-183 86-149 (157)
110 COG0647 NagD Predicted sugar p 41.0 1E+02 0.0022 28.0 6.7 92 192-301 18-109 (269)
111 PF06351 Allene_ox_cyc: Allene 40.4 32 0.00069 28.2 3.0 48 147-200 61-112 (176)
112 PF14155 DUF4307: Domain of un 39.9 1.7E+02 0.0038 22.5 10.3 23 80-102 35-57 (112)
113 PRK05892 nucleoside diphosphat 39.7 37 0.00079 28.1 3.4 66 107-183 82-149 (158)
114 COG0707 MurG UDP-N-acetylgluco 38.8 53 0.0011 31.1 4.8 25 190-214 2-28 (357)
115 PHA02099 hypothetical protein 38.0 40 0.00087 23.5 2.8 50 146-198 2-53 (84)
116 PRK00226 greA transcription el 36.7 39 0.00084 27.8 3.2 66 107-183 85-150 (157)
117 TIGR01462 greA transcription e 36.6 43 0.00094 27.4 3.4 65 108-183 81-145 (151)
118 PF03033 Glyco_transf_28: Glyc 36.3 69 0.0015 24.9 4.5 29 191-222 1-31 (139)
119 PF00667 FAD_binding_1: FAD bi 34.6 1.1E+02 0.0025 26.4 6.0 46 75-121 5-55 (219)
120 TIGR00649 MG423 conserved hypo 34.2 4.3E+02 0.0093 25.4 10.6 114 189-326 286-407 (422)
121 PLN02343 allene oxide cyclase 33.8 52 0.0011 28.1 3.4 49 146-200 111-163 (229)
122 COG0782 Uncharacterized conser 32.6 61 0.0013 26.6 3.6 66 107-183 78-143 (151)
123 PF14962 AIF-MLS: Mitochondria 32.6 15 0.00032 31.0 0.0 32 21-53 35-66 (180)
124 cd06430 GT8_like_2 GT8_like_2 31.7 3.5E+02 0.0076 25.0 8.8 62 190-253 2-66 (304)
125 PRK09783 copper/silver efflux 29.4 4.7E+02 0.01 25.1 9.8 41 80-121 279-322 (409)
126 TIGR00999 8a0102 Membrane Fusi 29.3 3E+02 0.0065 24.1 8.0 42 79-121 155-199 (265)
127 TIGR01461 greB transcription e 28.7 96 0.0021 25.5 4.2 61 108-183 84-147 (156)
128 PRK13606 LPPG:FO 2-phospho-L-l 28.2 87 0.0019 28.9 4.2 22 190-211 2-23 (303)
129 cd05830 Sortase_D_5 Sortase D 27.1 1E+02 0.0022 24.6 4.0 45 140-184 40-84 (137)
130 PRK14535 cysS cysteinyl-tRNA s 26.6 37 0.00081 34.9 1.6 86 221-322 202-287 (699)
131 cd05197 GH4_glycoside_hydrolas 26.5 1.9E+02 0.0041 28.1 6.4 64 190-256 2-68 (425)
132 PF13285 DUF4073: Domain of un 25.1 3E+02 0.0065 22.4 6.1 57 105-174 98-154 (158)
133 KOG1478 3-keto sterol reductas 24.1 5.5E+02 0.012 23.4 8.5 61 188-254 2-67 (341)
134 PRK10893 lipopolysaccharide ex 23.6 3.9E+02 0.0084 22.8 7.2 18 31-48 5-22 (192)
135 COG0215 CysS Cysteinyl-tRNA sy 23.5 57 0.0012 31.9 2.2 45 277-321 16-60 (464)
136 PRK11797 D-ribose pyranase; Pr 23.5 1E+02 0.0022 24.9 3.4 52 158-213 10-61 (139)
137 TIGR00661 MJ1255 conserved hyp 23.4 1.4E+02 0.003 27.4 4.7 23 190-212 1-26 (321)
138 PF10399 UCR_Fe-S_N: Ubiquitin 23.1 52 0.0011 20.6 1.2 17 26-42 7-23 (41)
139 COG0521 MoaB Molybdopterin bio 22.2 34 0.00073 28.7 0.4 14 189-202 68-81 (169)
140 COG0391 Uncharacterized conser 21.9 90 0.002 29.1 3.1 25 187-211 6-30 (323)
141 cd06166 Sortase_D_5 Sortase D 21.7 1.6E+02 0.0034 23.1 4.1 46 139-184 37-83 (126)
142 TIGR03590 PseG pseudaminic aci 21.6 2.6E+02 0.0057 25.1 6.1 59 189-252 171-230 (279)
143 cd04100 Asp_Lys_Asn_RS_N Asp_L 21.5 1.2E+02 0.0026 21.6 3.2 37 143-179 25-61 (85)
144 PF13344 Hydrolase_6: Haloacid 21.4 1.6E+02 0.0034 22.1 3.9 85 195-299 11-96 (101)
145 cd04482 RPA2_OBF_like RPA2_OBF 21.1 1.7E+02 0.0037 21.6 3.9 36 145-181 28-63 (91)
146 cd07044 CofD_YvcK Family of Co 20.5 68 0.0015 29.7 2.0 21 191-211 1-21 (309)
147 PF01118 Semialdhyde_dh: Semia 20.0 2.5E+02 0.0054 21.5 4.9 25 283-320 67-91 (121)
No 1
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.6e-54 Score=386.11 Aligned_cols=244 Identities=50% Similarity=0.947 Sum_probs=230.4
Q ss_pred CCCCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296 67 TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG 145 (328)
Q Consensus 67 ~~~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~ 145 (328)
...+...++..|.++++++++.+|||+..|+|.+|. +..+++..|||+.++.+.. +..+.|||||+|.+.+.|
T Consensus 40 ~~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~------g~~vvRpYTPvs~~~~~g 113 (286)
T KOG0534|consen 40 TGKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIG------GKLVVRPYTPVSLDDDKG 113 (286)
T ss_pred cCcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCC------CcEEEEecCCccCccccc
Confidence 345566677889999999999999999999999996 8899999999999999987 788999999999998889
Q ss_pred eEEEEEEEeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 020296 146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYG 225 (328)
Q Consensus 146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~ 225 (328)
+++|+||.|++|+||+||++|++||+|+++||.|+|.++++..++++|||||||||||+|++++++++++|.++|+|+|+
T Consensus 114 ~~~l~VK~Y~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~ 193 (286)
T KOG0534|consen 114 YFDLVVKVYPKGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYA 193 (286)
T ss_pred eEEEEEEeccCCcccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCC-CcEEEEECChhhHHhhhcccc
Q 020296 226 NISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSD-DALILVCGPPGMMKHVSGEKA 303 (328)
Q Consensus 226 ~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~-~~~v~vCGP~~m~~~v~g~~~ 303 (328)
|++++|+++++||++|+.++|. |+++++++.+...|.+..|||++++|.++++.+.+ +..++||||++|++.++
T Consensus 194 N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~---- 269 (286)
T KOG0534|consen 194 NKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAA---- 269 (286)
T ss_pred cCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHH----
Confidence 9999999999999999999994 99999999999999999999999999999988876 59999999999998654
Q ss_pred cCCCcchHHHHHhhcCCCCCCeEeC
Q 020296 304 KDYSQGELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 304 ~~~~qg~~~~~L~~~G~~~~~I~~f 328 (328)
...|+.+||+++|||+|
T Consensus 270 --------~~~le~Lg~~~~~vf~f 286 (286)
T KOG0534|consen 270 --------QGNLEKLGYNEDQVFVF 286 (286)
T ss_pred --------HHHHHhcCCChHhEEeC
Confidence 48999999999999998
No 2
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.1e-48 Score=361.02 Aligned_cols=253 Identities=35% Similarity=0.666 Sum_probs=220.0
Q ss_pred CCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
+.++.|.+++|++++.+++|++.|+|++|......+.||||+.+.++...+ .+....|+|||+|.|.+.+.++|+||
T Consensus 47 ~~~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~---~~~~~~R~YSiaS~p~~~~~le~~IK 123 (325)
T PTZ00274 47 VFSQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQ---PMDQCQRFYTPVTANHTKGYFDIIVK 123 (325)
T ss_pred cCCCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCC---CCCEEEEeeecCCCCCCCCeEEEEEE
Confidence 337889999999999999999999999876456789999999987753210 13457899999999987899999999
Q ss_pred EeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC-----CCCCeEEEEEeeC
Q 020296 153 VYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP-----DDNTQVSLLYGNI 227 (328)
Q Consensus 153 ~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~-----~~~~~i~L~~~~r 227 (328)
++++|.+|+||+++++||+|.|+||.|.+.++++..++++||||||||||+++|+++++.++ .+.++|+|+|++|
T Consensus 124 ~~~~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R 203 (325)
T PTZ00274 124 RKKDGLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNR 203 (325)
T ss_pred EcCCCcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcC
Confidence 99999999999999999999999999888777666689999999999999999999988753 2346899999999
Q ss_pred CCchhhhHHHHHHHHHhCCC-eEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCC-CCcEEEEECChhhHHhhhcccc
Q 020296 228 SPDDILLKQKLDILAASHPN-LKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPS-DDALILVCGPPGMMKHVSGEKA 303 (328)
Q Consensus 228 ~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~-~~~~v~vCGP~~m~~~v~g~~~ 303 (328)
+.+|+++.+||++|++++++ |+++++++++ ++.|.+..|+++++++.+.++.+. .+..||+|||++||+++.|.+.
T Consensus 204 ~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~~~ 283 (325)
T PTZ00274 204 TERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGTPM 283 (325)
T ss_pred CHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHhcCCCc
Confidence 99999999999999999995 9999999864 456888999999888777766543 2368999999999999999986
Q ss_pred c---CCCcc--------------hHHHHHhhcCCCCCCeEeC
Q 020296 304 K---DYSQG--------------ELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 304 ~---~~~qg--------------~~~~~L~~~G~~~~~I~~f 328 (328)
+ ...|| +|.++|+++||++++||||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PTZ00274 284 GTMSSMSSGMNIQPMAPDLNNLVSLGGILGELGYDNDDVYRF 325 (325)
T ss_pred ccccccccccccccccccccccccccchHHHhCCChhheecC
Confidence 4 56677 9999999999999999998
No 3
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=5.5e-45 Score=334.74 Aligned_cols=244 Identities=43% Similarity=0.784 Sum_probs=208.0
Q ss_pred CCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeE
Q 020296 69 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHF 147 (328)
Q Consensus 69 ~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l 147 (328)
++..|+++.|.+++|++++++++++..|+|+++. .....+.||||+.++++.... +......|+|||++.+.+++.+
T Consensus 24 ~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~--~~~~~~~R~YS~~s~~~~~~~i 101 (300)
T PTZ00319 24 PPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTP--GKPETVQHSYTPISSDDEKGYV 101 (300)
T ss_pred CccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCC--CccceEEeeeccCCCcccCCEE
Confidence 4467899999999999999999999999999864 455789999999999875310 0112578999999998888999
Q ss_pred EEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCC---------------CCceEEEEecCccHHHH
Q 020296 148 DLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPN---------------MKKHIGMIAGGTGITPM 203 (328)
Q Consensus 148 ~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~---------------~~~~ivlIAgGtGItP~ 203 (328)
+|+||.+ ++|.+|+||+++++||+|.++||+|.|.+..+ ..++++||||||||||+
T Consensus 102 ~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~ 181 (300)
T PTZ00319 102 DFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPM 181 (300)
T ss_pred EEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHH
Confidence 9999998 67999999999999999999999999866532 12589999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeC-CCCCCCCcccccCHHHHhhcCCCCC-
Q 020296 204 LQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDN-PTKNWKGGVGYISKDTALKGLPSPS- 281 (328)
Q Consensus 204 ~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~-~~~~~~g~~g~i~~~~l~~~~~~~~- 281 (328)
++|+++++++..+.++++|+|++|+.+|+++.+||++++ +++++++++++++ +.+.|.+..|++++..+++.++...
T Consensus 182 ~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~ 260 (300)
T PTZ00319 182 LQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDP 260 (300)
T ss_pred HHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccc
Confidence 999999987655557899999999999999999999954 6788999999887 4567888899999888887766432
Q ss_pred -----CCcEEEEECChhhHH-hhhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296 282 -----DDALILVCGPPGMMK-HVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 282 -----~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f 328 (328)
++..||+|||++|++ ++. +.|+++|+++++||+|
T Consensus 261 ~~~~~~~~~vyiCGp~~mv~~~~~-------------~~L~~~G~~~~~i~~~ 300 (300)
T PTZ00319 261 QNSGIKKVMALMCGPPPMLQMAVK-------------PNLEKIGYTADNMFTF 300 (300)
T ss_pred cccccCCeEEEEECCHHHHHHHHH-------------HHHHHcCCCHHHEEEC
Confidence 347899999999999 455 8999999999999998
No 4
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=3.5e-43 Score=312.20 Aligned_cols=229 Identities=55% Similarity=0.989 Sum_probs=203.5
Q ss_pred EEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
++|++++.+++++..|+|+.++ .....+.||||+.++++.. +....|+|||++.+.+.+.++|+||.+++|.+
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~------~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~ 74 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDD------GEQVVRPYTPISPDDDKGYFDLLIKIYPGGKM 74 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCC------CcccccccccccCCCcCCEEEEEEEECCCCcc
Confidence 5799999999999999999886 3457899999999998764 45688999999998777899999999999999
Q ss_pred chhhhcCCCCCEEEEEceeeccccCCCCC-ceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 160 SQHFASLKPGDVVEVKGPIEKLRYSPNMK-KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 160 S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~-~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
|+||+++++||+|.++||+|.|.+.++.. ++++||||||||||+++++++++.+..+..+|+|+|++|+.+++++.+||
T Consensus 75 s~~l~~~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l 154 (234)
T cd06183 75 SQYLHSLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREEL 154 (234)
T ss_pred hhHHhcCCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHH
Confidence 99999999999999999999998876554 89999999999999999999998764345799999999999999999999
Q ss_pred HHHHHhC-CCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-CCCCcEEEEECChhhHH-hhhcccccCCCcchHHHHH
Q 020296 239 DILAASH-PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-PSDDALILVCGPPGMMK-HVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 239 ~~l~~~~-~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-~~~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L 315 (328)
++|.+.+ ++++++++++++++.|.+..|+++++.++..+.. +..+..+|+|||++|++ +++ +.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~-------------~~l 221 (234)
T cd06183 155 DELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVK-------------GLL 221 (234)
T ss_pred HHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHH-------------HHH
Confidence 9999886 4599999998888888899999998887776653 33468899999999999 998 999
Q ss_pred hhcCCCCCCeEeC
Q 020296 316 KDLGYTEQMVYKF 328 (328)
Q Consensus 316 ~~~G~~~~~I~~f 328 (328)
+++|+++++||+|
T Consensus 222 ~~~G~~~~~i~~~ 234 (234)
T cd06183 222 KELGYKKDNVFKF 234 (234)
T ss_pred HHcCCCHHHEEeC
Confidence 9999999999998
No 5
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=7.5e-43 Score=356.67 Aligned_cols=240 Identities=43% Similarity=0.766 Sum_probs=213.8
Q ss_pred CccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEE
Q 020296 70 KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD 148 (328)
Q Consensus 70 ~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~ 148 (328)
...|++..|.+++|++++.+++++++|+|+++. ....++.+|||+++++... +....|+|||+|.+.+.+.|+
T Consensus 626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~------g~~~~R~YSpaS~~~~~g~le 699 (888)
T PLN02252 626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATIN------GKLCMRAYTPTSSDDEVGHFE 699 (888)
T ss_pred ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecC------CeEEEeeeEecccCCCCCEEE
Confidence 467889999999999999999999999999986 4567899999999998754 556889999999998889999
Q ss_pred EEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccC--------C--CCCceEEEEecCccHHHHHHHHHH
Q 020296 149 LLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS--------P--NMKKHIGMIAGGTGITPMLQVIEA 209 (328)
Q Consensus 149 l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~--------~--~~~~~ivlIAgGtGItP~~~ll~~ 209 (328)
|+||.+ ++|.+|++|++|++||+|.|+||+|+|.+. . ...++++||||||||||+++|+++
T Consensus 700 l~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ 779 (888)
T PLN02252 700 LVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQA 779 (888)
T ss_pred EEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHH
Confidence 999998 679999999999999999999999987553 1 234799999999999999999999
Q ss_pred HHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCC-CCCCCcccccCHHHHhhcCCCCCCCcEEE
Q 020296 210 ILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPT-KNWKGGVGYISKDTALKGLPSPSDDALIL 287 (328)
Q Consensus 210 l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~-~~~~g~~g~i~~~~l~~~~~~~~~~~~v~ 287 (328)
++.++++.++|+|+|++|+++|+++++||++|++++|+ |+++++++++. +.|.+..|+++++++++.++....+..+|
T Consensus 780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy 859 (888)
T PLN02252 780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL 859 (888)
T ss_pred HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence 99876667899999999999999999999999999965 99999998865 77999999999988888876654567899
Q ss_pred EECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296 288 VCGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 288 vCGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f 328 (328)
+|||++|++. +. ..|+++|+++++||.|
T Consensus 860 iCGPp~Mi~~av~-------------~~L~~~G~~~~~I~~f 888 (888)
T PLN02252 860 MCGPPPMIEFACQ-------------PNLEKMGYDKDSILVF 888 (888)
T ss_pred EeCCHHHHHHHHH-------------HHHHHcCCCHHHEEEC
Confidence 9999999995 65 8999999999999988
No 6
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=1.5e-42 Score=316.96 Aligned_cols=242 Identities=23% Similarity=0.405 Sum_probs=201.1
Q ss_pred ccCCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCC--CCC---------------------CC
Q 020296 71 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ--DAE---------------------GN 127 (328)
Q Consensus 71 ~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~--~~~---------------------~~ 127 (328)
.++. ..+.+++|++++.+++++..|+|+.+......|+||||+.++++... ..+ -+
T Consensus 3 ~~~~-~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (283)
T cd06188 3 EVLG-AKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH 81 (283)
T ss_pred cccc-cceEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhccccccccc
Confidence 3444 44557999999999999999999988633468999999999986420 000 01
Q ss_pred CccccccccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCc
Q 020296 128 TKYVVRPYTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGT 198 (328)
Q Consensus 128 ~~~~~RpYTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGt 198 (328)
+....|+|||++.|.+.+.++|+||. +++|.+|+||+++++||+|.|.||+|.|.+.. ..++++||||||
T Consensus 82 ~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGt 160 (283)
T cd06188 82 DEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGA 160 (283)
T ss_pred CCccccccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecc
Confidence 23456999999999877999999996 56899999999999999999999999998764 457999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCC--CCCCCcccccCHHHHhhc
Q 020296 199 GITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPT--KNWKGGVGYISKDTALKG 276 (328)
Q Consensus 199 GItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~ 276 (328)
|||||++|+++++....+..+++|+|++|+.+|+++.+||++|++++++++++++++++. +.|.+..|++++.+++..
T Consensus 161 GItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~ 240 (283)
T cd06188 161 GMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENY 240 (283)
T ss_pred cHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHHHHHHH
Confidence 999999999998765443478999999999999999999999999999999988888754 668888999997766655
Q ss_pred CCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 277 LPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 277 ~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+... ..+..||+|||++|++++. ..|+++|+++++||.
T Consensus 241 ~~~~~~~~~~~vyiCGP~~m~~~~~-------------~~l~~~Gv~~~~i~~ 280 (283)
T cd06188 241 LKKHPAPEDIEFYLCGPPPMNSAVI-------------KMLDDLGVPRENIAF 280 (283)
T ss_pred hccCCCCCCeEEEEECCHHHHHHHH-------------HHHHHcCCCHHHeec
Confidence 4321 2357899999999999998 999999999999985
No 7
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=4.6e-42 Score=305.40 Aligned_cols=230 Identities=24% Similarity=0.459 Sum_probs=201.7
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
|++++|++++.+++++++++|+.++.....++||||+.++++.. .+....|||||++.+.+.+.++|+||.+++|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~-----~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G 75 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAI-----DGYTAQRSYSIASSPTQRGRVELTVKRVPGG 75 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecC-----CCceeeeeecccCCCCCCCeEEEEEEEcCCC
Confidence 67899999999999999999998863247899999999999743 2445679999999988778999999999999
Q ss_pred ccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296 158 KMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ 236 (328)
Q Consensus 158 ~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~ 236 (328)
.+|+||++ +++||.|.+.||+|.|.+.+...++++||||||||||++++++++.... +..+++++|++|+.+++++.+
T Consensus 76 ~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~ 154 (235)
T cd06217 76 EVSPYLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-WPVPFRLLYSARTAEDVIFRD 154 (235)
T ss_pred cchHHHHhcCCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhHHH
Confidence 99999985 8999999999999998876655689999999999999999999998764 347899999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEeCC-CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 237 KLDILAASHPNLKVFYTVDNP-TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 237 el~~l~~~~~~~~v~~~~~~~-~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
||.++++++++++++++++++ .+.|.+..|+++++.+++..... ++..||+|||++|++++. +.|
T Consensus 155 el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~-~~~~v~icGp~~m~~~v~-------------~~l 220 (235)
T cd06217 155 ELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPL-AGRRVYVCGPPAFVEAAT-------------RLL 220 (235)
T ss_pred HHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCc-cCCEEEEECCHHHHHHHH-------------HHH
Confidence 999999988899999888876 46678889999987777664433 358999999999999998 999
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
+++|+++++|+.
T Consensus 221 ~~~Gv~~~~i~~ 232 (235)
T cd06217 221 LELGVPRDRIRT 232 (235)
T ss_pred HHcCCCHHHEee
Confidence 999999999974
No 8
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=8.6e-42 Score=304.38 Aligned_cols=229 Identities=22% Similarity=0.378 Sum_probs=198.4
Q ss_pred CCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296 76 DKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155 (328)
Q Consensus 76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~ 155 (328)
.....++|++++.+++++..|+|+.+......|+||||+.++++.. ...|+|||++.+.+.+.++|+||.++
T Consensus 4 ~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~~~~~~~l~l~i~~~~ 75 (238)
T cd06211 4 VKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--------EGTRAFSIASSPSDAGEIELHIRLVP 75 (238)
T ss_pred ceEEeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--------CCccccccCCCCCCCCEEEEEEEECC
Confidence 3445799999999999999999998864335899999999997642 26799999999877799999999999
Q ss_pred CCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296 156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL 234 (328)
Q Consensus 156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~ 234 (328)
+|.+|++|+ .+++||+|.|+||+|.|.+.++..++++||||||||||++++++++++... ..+++|+|++|+.+++++
T Consensus 76 ~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-~~~v~l~~~~r~~~~~~~ 154 (238)
T cd06211 76 GGIATTYVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD-TRKITLFFGARTRAELYY 154 (238)
T ss_pred CCcchhhHhhcCCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-CCcEEEEEecCChhhhcc
Confidence 999999998 799999999999999988776555899999999999999999999987643 368999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 235 KQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 235 ~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
.+||++|++++++++++.+++++ .+.|.+..|++++ .+.+.+....++..+|+|||++|++++.
T Consensus 155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyvCGp~~m~~~~~------------- 220 (238)
T cd06211 155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHD-AAKKHFKNDFRGHKAYLCGPPPMIDACI------------- 220 (238)
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHH-HHHHhcccccccCEEEEECCHHHHHHHH-------------
Confidence 99999999999999998888864 3568888999984 6666554222357899999999999998
Q ss_pred HHHhhcCCCCCCeEe
Q 020296 313 GILKDLGYTEQMVYK 327 (328)
Q Consensus 313 ~~L~~~G~~~~~I~~ 327 (328)
..|.++|+++++||.
T Consensus 221 ~~L~~~Gv~~~~i~~ 235 (238)
T cd06211 221 KTLMQGRLFERDIYY 235 (238)
T ss_pred HHHHHcCCCHHHccc
Confidence 999999999999984
No 9
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=6.9e-42 Score=303.47 Aligned_cols=226 Identities=23% Similarity=0.446 Sum_probs=199.7
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++.+++++..|+|+.+......+.||||+.++++.. +....|+|||++.+.+.+.++|+||.+++|.+|
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s 74 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEID------GETVYRAYTLSSSPSRPDSLSITVKRVPGGLVS 74 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecC------CCeEEEeeecccCCCCCCcEEEEEEEcCCCcch
Confidence 37999999999999999998863347899999999998754 445689999999988778899999999999999
Q ss_pred hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
+||+ ++++||+|.|.||+|.|.+.....++++||||||||||+++|++++.+.. ...+++|+|++|+.+++++.++|+
T Consensus 75 ~~l~~~~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~ 153 (231)
T cd06215 75 NWLHDNLKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-PDADIVFIHSARSPADIIFADELE 153 (231)
T ss_pred HHHHhcCCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCcEEEEEecCChhhhhHHHHHH
Confidence 9997 79999999999999999886554689999999999999999999998763 346899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCC-CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296 240 ILAASHPNLKVFYTVDNPTKN-WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL 318 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~-~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~ 318 (328)
+|+++++++++++++++++.. |.+..|+++.+.+++..++.. +..||+|||++|+++++ +.|+++
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~v~icGp~~m~~~~~-------------~~l~~~ 219 (231)
T cd06215 154 ELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLK-ERTVFVCGPAGFMKAVK-------------SLLAEL 219 (231)
T ss_pred HHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCcc-CCeEEEECCHHHHHHHH-------------HHHHHc
Confidence 999999999999998876664 888899999878877665443 46899999999999998 999999
Q ss_pred CCCCCCeEe
Q 020296 319 GYTEQMVYK 327 (328)
Q Consensus 319 G~~~~~I~~ 327 (328)
|+++++||.
T Consensus 220 gv~~~~i~~ 228 (231)
T cd06215 220 GFPMSRFHQ 228 (231)
T ss_pred CCCHHHeee
Confidence 999999984
No 10
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=9.4e-42 Score=303.69 Aligned_cols=225 Identities=24% Similarity=0.418 Sum_probs=197.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCC----CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPS----AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~----~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~ 155 (328)
+++|++++.++++++.++|+.+.. ....|+||||+.++++.. ...|+|||++.+.+.+.++|+||.++
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~~~~~l~~~i~~~~ 74 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--------DTRRSYSLANTPNWDGRLEFLIRLLP 74 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--------ccceecccCCCCCCCCEEEEEEEEcC
Confidence 689999999999999999998753 357899999999997643 26799999999877789999999999
Q ss_pred CCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296 156 EGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL 234 (328)
Q Consensus 156 ~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~ 234 (328)
+|.+|+||++ +++||+|.|.||+|.|.+++...++++||||||||||+++|++++.... ...+++|+|++|+.+|+++
T Consensus 75 ~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 153 (236)
T cd06210 75 GGAFSTYLETRAKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFY 153 (236)
T ss_pred CCccchhhhhCcCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhh
Confidence 9999999996 9999999999999999887665689999999999999999999998764 3368999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHH
Q 020296 235 KQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGI 314 (328)
Q Consensus 235 ~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~ 314 (328)
.++|++|++++++++++++++++...|.+..|++.. .+.+.+........||+|||++|+++++ ..
T Consensus 154 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~-~l~~~l~~~~~~~~vyicGp~~m~~~~~-------------~~ 219 (236)
T cd06210 154 LDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVD-ALREDLASSDAKPDIYLCGPPGMVDAAF-------------AA 219 (236)
T ss_pred HHHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHH-HHHHhhcccCCCcEEEEeCCHHHHHHHH-------------HH
Confidence 999999999999999999998877778888899874 4555454433357899999999999998 99
Q ss_pred HhhcCCCCCCeEe
Q 020296 315 LKDLGYTEQMVYK 327 (328)
Q Consensus 315 L~~~G~~~~~I~~ 327 (328)
|++.|+++++|+.
T Consensus 220 l~~~G~~~~~i~~ 232 (236)
T cd06210 220 AREAGVPDEQVYL 232 (236)
T ss_pred HHHcCCCHHHeee
Confidence 9999999999874
No 11
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=6.3e-42 Score=302.53 Aligned_cols=220 Identities=22% Similarity=0.424 Sum_probs=195.0
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++.++++++.|+|+.+. ...+.||||+.++++.. ..|||||++.+.+.+.++|+||.+++|.+|
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s 69 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA--PLDFLAGQYLDLLLDDG---------DKRPFSIASAPHEDGEIELHIRAVPGGSFS 69 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC--CcccCCCCEEEEEcCCC---------CceeeecccCCCCCCeEEEEEEecCCCccH
Confidence 4789999999999999999874 57899999999998643 479999999987779999999999999999
Q ss_pred hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
++|+ .+++||+|.|+||+|.|.+.++..++++||||||||||+++++++++... +..+++|+|++|+.+++++.+||+
T Consensus 70 ~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~~l~ 148 (224)
T cd06189 70 DYVFEELKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLDELLE 148 (224)
T ss_pred HHHHHhccCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCHHHHH
Confidence 9998 59999999999999998877665789999999999999999999998764 347899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
+|++++++++++.++++++++|.+..|++++.+++.. ... .+..+|+|||++|++++. +.|.++|
T Consensus 149 ~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~~-~~~~v~vCGp~~m~~~~~-------------~~l~~~G 213 (224)
T cd06189 149 AWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PDL-SDFDVYACGSPEMVYAAR-------------DDFVEKG 213 (224)
T ss_pred HHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhhc-cCc-cccEEEEECCHHHHHHHH-------------HHHHHcC
Confidence 9999999999998988887779889999986655543 222 357899999999999998 9999999
Q ss_pred CCCCCeEe
Q 020296 320 YTEQMVYK 327 (328)
Q Consensus 320 ~~~~~I~~ 327 (328)
+++++||.
T Consensus 214 ~~~~~i~~ 221 (224)
T cd06189 214 LPEENFFS 221 (224)
T ss_pred CCHHHccc
Confidence 99999985
No 12
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.2e-41 Score=318.33 Aligned_cols=228 Identities=21% Similarity=0.366 Sum_probs=200.5
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~ 153 (328)
+..+..++|++++.+++++.+++|+.+. .....|.||||+.++++.. ...|+|||++.|.+.+.++|+||.
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySias~p~~~~~l~~~ik~ 174 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--------DDWRSYSFANRPNATNQLQFLIRL 174 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--------CceeecccCCCCCCCCeEEEEEEE
Confidence 4456689999999999999999999875 3467899999999998642 258999999998778999999999
Q ss_pred eCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 154 YPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 154 ~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
+++|.+|+||+ ++++||.|.|+||+|.|.+.. ..++++||||||||||+++|+++++... ..++++|+|++|+.+|+
T Consensus 175 ~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl 252 (340)
T PRK11872 175 LPDGVMSNYLRERCQVGDEILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADL 252 (340)
T ss_pred CCCCcchhhHhhCCCCCCEEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHh
Confidence 99999999997 699999999999999998764 3589999999999999999999998764 34689999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
++.+||++|++++++|+++.+++++++.|.+..|++++.+.+..+.. .+..||+|||++|++++.
T Consensus 253 ~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~~--~~~~vy~CGp~~mv~~~~------------- 317 (340)
T PRK11872 253 CELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQLRD--QAFDMYLCGPPPMVEAVK------------- 317 (340)
T ss_pred ccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhcCc--CCCEEEEeCCHHHHHHHH-------------
Confidence 99999999999999999999999888889999999996555444432 246799999999999998
Q ss_pred HHHhhcCCCCCCeEe
Q 020296 313 GILKDLGYTEQMVYK 327 (328)
Q Consensus 313 ~~L~~~G~~~~~I~~ 327 (328)
..|+++|+++++||.
T Consensus 318 ~~L~~~Gv~~~~i~~ 332 (340)
T PRK11872 318 QWLDEQALENYRLYY 332 (340)
T ss_pred HHHHHcCCCHHHEEE
Confidence 999999999999984
No 13
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=2.2e-41 Score=303.34 Aligned_cols=233 Identities=22% Similarity=0.282 Sum_probs=201.6
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
++..|+.++|++++.+++++.+|+|+.+.. ....+.||||+.+.++.+. ......|+|||++.+.+ +.++|.||
T Consensus 2 ~~~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~ySi~s~~~~-~~l~~~ik 76 (247)
T cd06184 2 GWRGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPG----LGYRQIRQYSLSDAPNG-DYYRISVK 76 (247)
T ss_pred CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCC----CCCceeEEeEeccCCCC-CeEEEEEE
Confidence 467899999999999999999999998763 2368999999999987541 12458899999999865 59999999
Q ss_pred EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296 153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD 231 (328)
Q Consensus 153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d 231 (328)
.+++|.+|+||++ +++||+|.|.||+|.|.++.+..++++||||||||||++++++++..+ +...+++|+|++|+.++
T Consensus 77 ~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~-~~~~~i~l~~~~r~~~~ 155 (247)
T cd06184 77 REPGGLVSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE-GPGRPVTFIHAARNSAV 155 (247)
T ss_pred EcCCCcchHHHHhcCCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc-CCCCcEEEEEEcCchhh
Confidence 9999999999997 999999999999999988765578999999999999999999999875 23478999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeCCCCC----CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296 232 ILLKQKLDILAASHPNLKVFYTVDNPTKN----WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307 (328)
Q Consensus 232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~~----~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~ 307 (328)
++|.++|++|++++++++++++++++... |.+..|+++.+.+.+... ..+..||+|||++|+++++
T Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~v~icGp~~m~~~v~-------- 225 (247)
T cd06184 156 HAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL--PADADFYLCGPVPFMQAVR-------- 225 (247)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhhccC--CCCCEEEEECCHHHHHHHH--------
Confidence 99999999999988899999998876554 356789998777766433 2358999999999999998
Q ss_pred cchHHHHHhhcCCCCCCeEe
Q 020296 308 QGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 308 qg~~~~~L~~~G~~~~~I~~ 327 (328)
..|+++|+++++||.
T Consensus 226 -----~~l~~~G~~~~~i~~ 240 (247)
T cd06184 226 -----EGLKALGVPAERIHY 240 (247)
T ss_pred -----HHHHHcCCCHHHeee
Confidence 999999999999985
No 14
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=2.1e-41 Score=300.55 Aligned_cols=225 Identities=21% Similarity=0.389 Sum_probs=195.2
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++.+++++++|+|+.+......+.||||+.++++.. +....|+|||++.+. .+.++|.||.+++|.+|
T Consensus 1 l~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s 73 (231)
T cd06191 1 LRVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFD------GEELRRCYSLCSSPA-PDEISITVKRVPGGRVS 73 (231)
T ss_pred CEEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecC------CeEEeeeeeccCCCC-CCeEEEEEEECCCCccc
Confidence 37899999999999999998764445789999999998754 455789999999886 68999999999999999
Q ss_pred hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
+||+ ++++||+|.|+||+|.|.+++...++++||||||||||+++|++++.... ...+++|+|++|+.+++++.+||+
T Consensus 74 ~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~ 152 (231)
T cd06191 74 NYLREHIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-PESDFTLIHSARTPADMIFAQELR 152 (231)
T ss_pred hHHHhcCCCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHHHHH
Confidence 9998 69999999999999999887766689999999999999999999998653 347899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhh
Q 020296 240 ILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKD 317 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~ 317 (328)
+|++++++++++++++++ ...|.+..|++..++.+...+.. .+..||+|||++|+++++ +.|++
T Consensus 153 ~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vyicGp~~mv~~~~-------------~~l~~ 218 (231)
T cd06191 153 ELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDR-LEREAFICGPAGMMDAVE-------------TALKE 218 (231)
T ss_pred HHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccc-cCCeEEEECCHHHHHHHH-------------HHHHH
Confidence 999988999999998864 34577778888766555544432 247899999999999998 99999
Q ss_pred cCCCCCCeEe
Q 020296 318 LGYTEQMVYK 327 (328)
Q Consensus 318 ~G~~~~~I~~ 327 (328)
+|+++++||.
T Consensus 219 ~G~~~~~i~~ 228 (231)
T cd06191 219 LGMPPERIHT 228 (231)
T ss_pred cCCCHHHeee
Confidence 9999999984
No 15
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=4.8e-41 Score=297.61 Aligned_cols=221 Identities=24% Similarity=0.465 Sum_probs=192.9
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
+++|++++.+++++..++|+.+......|+||||+.++++.. ...|+|||++.+.+ +.++|+||.+++|.+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~ 73 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--------DETRSYSFSSAPGD-PRLEFLIRLLPGGAM 73 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--------CcccccccccCCCC-CeEEEEEEEcCCCcc
Confidence 589999999999999999998864457899999999997642 36799999998876 899999999999999
Q ss_pred chhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 160 SQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 160 S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
|+||++ +++||.|.|+||+|.+.+.+. .++++||||||||||++++++++.... +..+++|+|++|+.+++++.++|
T Consensus 74 s~~l~~~l~~G~~v~v~gP~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l 151 (228)
T cd06209 74 SSYLRDRAQPGDRLTLTGPLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVELDRL 151 (228)
T ss_pred hhhHHhccCCCCEEEEECCcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhccHHHH
Confidence 999997 999999999999999877644 488999999999999999999998764 45789999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL 318 (328)
Q Consensus 239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~ 318 (328)
++|.++++++++++++++++. |.+..|++++.+.+..+.. .+..||+|||++|+++++ +.|+++
T Consensus 152 ~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~~--~~~~v~icGp~~m~~~~~-------------~~l~~~ 215 (228)
T cd06209 152 EALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDLND--GDVDVYLCGPPPMVDAVR-------------SWLDEQ 215 (228)
T ss_pred HHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhccC--CCcEEEEeCCHHHHHHHH-------------HHHHHc
Confidence 999999999999999887554 7788899986444433332 357899999999999998 999999
Q ss_pred CCCCCCeEe
Q 020296 319 GYTEQMVYK 327 (328)
Q Consensus 319 G~~~~~I~~ 327 (328)
|+++++||.
T Consensus 216 G~~~~~i~~ 224 (228)
T cd06209 216 GIEPANFYY 224 (228)
T ss_pred CCCHHHEee
Confidence 999999984
No 16
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=3e-41 Score=315.96 Aligned_cols=228 Identities=21% Similarity=0.402 Sum_probs=199.7
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~ 154 (328)
+....+++|++++.++++++.|+|+.+......|.||||+.++++.. ..|+|||+|.+.+.+.++|+||.+
T Consensus 99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---------~~R~ySias~p~~~~~l~~~ik~~ 169 (339)
T PRK07609 99 PVKKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---------KRRSYSIANAPHSGGPLELHIRHM 169 (339)
T ss_pred cceEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---------ceeeeecCCCCCCCCEEEEEEEec
Confidence 44566899999999999999999998865567899999999997642 479999999998779999999999
Q ss_pred CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296 155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL 233 (328)
Q Consensus 155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~ 233 (328)
++|.+|+||+ ++++||+|.++||+|.|.+++...++++||||||||||+++|+++++... ..++|+|+|++|+.+|++
T Consensus 170 ~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-~~~~i~l~~g~r~~~dl~ 248 (339)
T PRK07609 170 PGGVFTDHVFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-IQRPVTLYWGARRPEDLY 248 (339)
T ss_pred CCCccHHHHHHhccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEecCChHHhc
Confidence 9999999998 79999999999999999887656689999999999999999999998753 346899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEEEeC--CCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchH
Q 020296 234 LKQKLDILAASHPNLKVFYTVDN--PTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGEL 311 (328)
Q Consensus 234 ~~~el~~l~~~~~~~~v~~~~~~--~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~ 311 (328)
+.+++++|++++++|+++.++++ +++.|.+..|++++.+++. +++.. +..||+|||++|++++.
T Consensus 249 ~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~-~~~~~-~~~vy~CGp~~m~~~~~------------ 314 (339)
T PRK07609 249 LSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED-FPDLS-GHQVYACGSPVMVYAAR------------ 314 (339)
T ss_pred cHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh-ccccc-CCEEEEECCHHHHHHHH------------
Confidence 99999999999999999988886 3567888999998765554 33332 47899999999999998
Q ss_pred HHHHhhcCCCCCCeEe
Q 020296 312 SGILKDLGYTEQMVYK 327 (328)
Q Consensus 312 ~~~L~~~G~~~~~I~~ 327 (328)
..|.++|+++++||.
T Consensus 315 -~~l~~~G~~~~~i~~ 329 (339)
T PRK07609 315 -DDFVAAGLPAEEFFA 329 (339)
T ss_pred -HHHHHcCCCHHHeEE
Confidence 999999999999984
No 17
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=7.6e-41 Score=297.11 Aligned_cols=224 Identities=18% Similarity=0.421 Sum_probs=195.1
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
+++|++++.++++++.++|+.+......+.||||+.++++.. + ..|+|||++.|.+.+.++|+||.+++|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~ 73 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGT------E--ETRSFSMANTPADPGRLEFIIKKYPGGLF 73 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCC------C--cccccccCCCCCCCCEEEEEEEECCCCch
Confidence 478999999999999999998764456899999999998643 2 78999999998877999999999999999
Q ss_pred chhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 160 SQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 160 S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
|++|++ +++||+|.+.||+|.+.+.....++++||||||||||++++++++.... ...+++|+|++|+.+++++.+||
T Consensus 74 s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l 152 (232)
T cd06212 74 SSFLDDGLAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFYLEEI 152 (232)
T ss_pred hhHHhhcCCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhccHHHH
Confidence 999995 9999999999999998876655789999999999999999999998764 34689999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEeCCC--CCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh
Q 020296 239 DILAASHPNLKVFYTVDNPT--KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK 316 (328)
Q Consensus 239 ~~l~~~~~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~ 316 (328)
++|++++++++++.+++++. ..|.+..|++++ .+.+.+.+.. +..||+|||++|++++. ..|+
T Consensus 153 ~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~-~~~~~~~~~~-~~~v~~CGp~~~~~~v~-------------~~l~ 217 (232)
T cd06212 153 AALGEKIPDFTFIPALSESPDDEGWSGETGLVTE-VVQRNEATLA-GCDVYLCGPPPMIDAAL-------------PVLE 217 (232)
T ss_pred HHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHH-HHHhhccCcc-CCEEEEECCHHHHHHHH-------------HHHH
Confidence 99999888999888888653 457788899874 5555554433 57899999999999998 9999
Q ss_pred hcCCCCCCeEe
Q 020296 317 DLGYTEQMVYK 327 (328)
Q Consensus 317 ~~G~~~~~I~~ 327 (328)
++|+++++||.
T Consensus 218 ~~G~~~~~i~~ 228 (232)
T cd06212 218 MSGVPPDQIFY 228 (232)
T ss_pred HcCCCHHHeee
Confidence 99999999984
No 18
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=2.9e-40 Score=295.41 Aligned_cols=225 Identities=22% Similarity=0.380 Sum_probs=197.1
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKV 153 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~ 153 (328)
...+..++|++++.+++++.+++|+.+. ....+.||||+.+.++.. +....|+|||++.+. +.+.++|+||.
T Consensus 14 ~~~~~~~~v~~i~~~~~~~~~i~l~~~~-~~~~~~pGQ~i~l~~~~~------~~~~~r~ysi~s~~~~~~~~l~~~ik~ 86 (243)
T cd06216 14 SARELRARVVAVRPETADMVTLTLRPNR-GWPGHRAGQHVRLGVEID------GVRHWRSYSLSSSPTQEDGTITLTVKA 86 (243)
T ss_pred ccceeEEEEEEEEEcCCCcEEEEEecCC-CCCCcCCCceEEEEEEEC------CeEEEEEEeccCCCcCCCCeEEEEEEE
Confidence 3456689999999999999999999764 345789999999998754 556789999999987 67999999999
Q ss_pred eCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 154 YPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 154 ~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
+++|.+|.||+ ++++||+|.+.||+|.|.++.+..++++||||||||||++++++++.... +..+++|+|++|+.+++
T Consensus 87 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~~~~ 165 (243)
T cd06216 87 QPDGLVSNWLVNHLAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDV 165 (243)
T ss_pred cCCCcchhHHHhcCCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCChhhh
Confidence 99999999999 59999999999999999887655789999999999999999999998764 44789999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
++.+||++|++++++++++++++++ +..|+++.+.+++..++.. +..+|+|||++|+++++
T Consensus 166 ~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~~-~~~vyvcGp~~m~~~~~------------- 226 (243)
T cd06216 166 IFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDAVVPDLA-DRQVYACGPPGFLDAAE------------- 226 (243)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHHhccCcc-cCeEEEECCHHHHHHHH-------------
Confidence 9999999999888999998888764 4568898888877665443 47999999999999998
Q ss_pred HHHhhcCCCCCCeEe
Q 020296 313 GILKDLGYTEQMVYK 327 (328)
Q Consensus 313 ~~L~~~G~~~~~I~~ 327 (328)
+.|+++|++ ++||.
T Consensus 227 ~~l~~~Gv~-~~i~~ 240 (243)
T cd06216 227 ELLEAAGLA-DRLHT 240 (243)
T ss_pred HHHHHCCCc-cceee
Confidence 999999999 99984
No 19
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.3e-40 Score=295.58 Aligned_cols=223 Identities=19% Similarity=0.289 Sum_probs=193.9
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
+.+++|++++.+++++..|+|+.+. ...|+||||+.++++.. ..|||||+|.|.+++.++|.||..++|
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySias~p~~~~~l~~~v~~~~~~ 70 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEA--PFSFRAGQYLMVVMGEK---------DKRPFSIASTPREKGFIELHIGASELN 70 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCC--CCccCCCCEEEEEcCCC---------cceeecccCCCCCCCcEEEEEEEcCCC
Confidence 4678999999999999999998663 46899999999997543 469999999987778999999999888
Q ss_pred ccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296 158 KMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ 236 (328)
Q Consensus 158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~ 236 (328)
.++.++. ++++||+|.|.||+|.+.+.++..++++||||||||||+++|++++...+ +..+++|+|++|+.+++++.+
T Consensus 71 ~~~~~~~~~l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-~~~~v~l~~g~r~~~~~~~~~ 149 (232)
T PRK08051 71 LYAMAVMERILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-PNRPITLYWGGREEDHLYDLD 149 (232)
T ss_pred cchHHHHHHcCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-CCCcEEEEEEeccHHHhhhhH
Confidence 7777765 89999999999999998776555689999999999999999999998763 347899999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH-
Q 020296 237 KLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL- 315 (328)
Q Consensus 237 el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L- 315 (328)
||++|++++++++++.+++++++.|.+..|++++.+++.. .+. .+..||+|||++|+++++ +.|
T Consensus 150 el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~~-~~~~vyicGp~~m~~~v~-------------~~l~ 214 (232)
T PRK08051 150 ELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GSL-AEYDIYIAGRFEMAKIAR-------------ELFC 214 (232)
T ss_pred HHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhhc-cCc-ccCEEEEECCHHHHHHHH-------------HHHH
Confidence 9999999999999999888887889889999987655443 232 246899999999999998 899
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
++.|+++++||.
T Consensus 215 ~~~G~~~~~i~~ 226 (232)
T PRK08051 215 RERGAREEHLFG 226 (232)
T ss_pred HHcCCCHHHeec
Confidence 999999999984
No 20
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1.7e-40 Score=309.89 Aligned_cols=224 Identities=18% Similarity=0.317 Sum_probs=193.9
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
...++|++++.++++++.|+|+.++ ...|+||||+.++++.. ....|+|||+|.|.+.+.++|+||++++|
T Consensus 9 ~~~~~V~~i~~~t~~v~~l~l~~~~--~~~f~pGQfv~l~~~~~-------~~~~R~ySias~p~~~~~l~i~Vk~~~~G 79 (332)
T PRK10684 9 PNRMQVHSIVQETPDVWTISLICHD--FYPYRAGQYALVSIRNS-------AETLRAYTLSSTPGVSEFITLTVRRIDDG 79 (332)
T ss_pred ceeEEEEEEEccCCCeEEEEEcCCC--CCCcCCCCEEEEEecCC-------CEeeeeecccCCCCCCCcEEEEEEEcCCC
Confidence 3478999999999999999998653 46799999999998642 24679999999998778999999999999
Q ss_pred ccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296 158 KMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ 236 (328)
Q Consensus 158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~ 236 (328)
.+|+||+ ++++||+|.+.||+|.|.++....++++||||||||||+++|+++++.+. +..+|+|+|++|+.+|++|.+
T Consensus 80 ~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-~~~~v~l~y~~r~~~~~~~~~ 158 (332)
T PRK10684 80 VGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-PQADVQVIFNVRTPQDVIFAD 158 (332)
T ss_pred cchhHHHhcCCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCCEEEEEeCCChHHhhhHH
Confidence 9999997 79999999999999999887655689999999999999999999988653 347899999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEeCCCCCCCC-cccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 237 KLDILAASHPNLKVFYTVDNPTKNWKG-GVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 237 el~~l~~~~~~~~v~~~~~~~~~~~~g-~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
||++|++++++++++++.+.+. +.+ ..|+++.+.+++.+++.. +..+|+|||++||+++. +.|
T Consensus 159 el~~l~~~~~~~~~~~~~~~~~--~~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~~~v~-------------~~l 222 (332)
T PRK10684 159 EWRQLKQRYPQLNLTLVAENNA--TEGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYMDWVE-------------QEV 222 (332)
T ss_pred HHHHHHHHCCCeEEEEEeccCC--CCCccccccCHHHHHHhccccc-CCEEEEECCHHHHHHHH-------------HHH
Confidence 9999999999988877765432 233 579999878877666543 47899999999999998 999
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
+++|+++++||.
T Consensus 223 ~~~Gv~~~~i~~ 234 (332)
T PRK10684 223 KALGVTADRFFK 234 (332)
T ss_pred HHcCCCHHHeEe
Confidence 999999999985
No 21
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=2e-40 Score=312.00 Aligned_cols=229 Identities=21% Similarity=0.348 Sum_probs=196.7
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~ 155 (328)
|+.++|++++.++++++.|+|+.|.. ....|+||||+.|+++.. +....|+|||++.+. .+.++|+||.++
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~p~-~~~l~i~vk~~~ 73 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVD------GEELRRSYSICSAPA-PGEIRVAVKKIP 73 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecC------CcEeeeeccccCCCC-CCcEEEEEEEeC
Confidence 57899999999999999999998752 346899999999998754 445789999999875 589999999999
Q ss_pred CCccchhhh-cCCCCCEEEEEceeeccccCCCC--CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNM--KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~--~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
+|.+|+||+ ++++||+|.|.||+|.|.+++.. .++++||||||||||+++|+++++... +..+|+|+|++|+.+|+
T Consensus 74 ~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~ 152 (352)
T TIGR02160 74 GGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-PRSTFTLVYGNRRTASV 152 (352)
T ss_pred CCcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-CCceEEEEEEeCCHHHH
Confidence 999999997 89999999999999999876542 378999999999999999999988753 34789999999999999
Q ss_pred hhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC---CCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296 233 LLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS---PSDDALILVCGPPGMMKHVSGEKAKDYSQ 308 (328)
Q Consensus 233 ~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~---~~~~~~v~vCGP~~m~~~v~g~~~~~~~q 308 (328)
+|.+||++|++++++ +++++++++++..|.+..|+++...+.+.+.. ......||+|||++||++++
T Consensus 153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~--------- 223 (352)
T TIGR02160 153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAE--------- 223 (352)
T ss_pred HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHH---------
Confidence 999999999998986 99999988877667667788876655544322 22346899999999999998
Q ss_pred chHHHHHhhcCCCCCCeEe
Q 020296 309 GELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 309 g~~~~~L~~~G~~~~~I~~ 327 (328)
+.|+++|+++++||.
T Consensus 224 ----~~L~~~Gv~~~~i~~ 238 (352)
T TIGR02160 224 ----QALTGLGVPAGRVHL 238 (352)
T ss_pred ----HHHHHcCCCHHHEEE
Confidence 999999999999985
No 22
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=2.6e-40 Score=316.27 Aligned_cols=233 Identities=22% Similarity=0.331 Sum_probs=199.3
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
++..|++++|++++.+++++..|+|+.++ .....++||||+.++++.++ .....+|+|||++.|. ++.++|+||
T Consensus 150 ~~~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~ySias~p~-~~~l~~~Vk 224 (399)
T PRK13289 150 GWRGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEG----EEYQEIRQYSLSDAPN-GKYYRISVK 224 (399)
T ss_pred CCCCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCC----ccccceeEEEeeeCCC-CCeEEEEEE
Confidence 45789999999999999999999999875 24468999999999987540 1222359999999886 479999999
Q ss_pred EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296 153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD 231 (328)
Q Consensus 153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d 231 (328)
++++|.+|.||++ +++||+|.|+||+|+|.++.+..++++||||||||||+++|+++++... +..+|+|+|++|+.+|
T Consensus 225 ~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~ 303 (399)
T PRK13289 225 REAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-PKRPVHFIHAARNGGV 303 (399)
T ss_pred ECCCCeehHHHhhcCCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCChhh
Confidence 9999999999985 9999999999999999887666789999999999999999999998653 3479999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeCCCC-CCC----CcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296 232 ILLKQKLDILAASHPNLKVFYTVDNPTK-NWK----GGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY 306 (328)
Q Consensus 232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~-~~~----g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~ 306 (328)
+++.+||++|++++++++++.+++++.. .|. +..|+++.+.+.+.++.. +..||+|||++|++++.
T Consensus 304 ~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~~--~~~vyiCGp~~m~~~v~------- 374 (399)
T PRK13289 304 HAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPDP--DADFYFCGPVPFMQFVA------- 374 (399)
T ss_pred chHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCCCC--CCEEEEECCHHHHHHHH-------
Confidence 9999999999999999999998887543 222 235899987777765432 57899999999999998
Q ss_pred CcchHHHHHhhcCCCCCCeEe
Q 020296 307 SQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 307 ~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+.|++.|+++++||.
T Consensus 375 ------~~L~~~Gv~~~~I~~ 389 (399)
T PRK13289 375 ------KQLLELGVPEERIHY 389 (399)
T ss_pred ------HHHHHcCCCHHHeee
Confidence 999999999999984
No 23
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=3.3e-40 Score=294.73 Aligned_cols=223 Identities=19% Similarity=0.320 Sum_probs=190.0
Q ss_pred EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccch
Q 020296 82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQ 161 (328)
Q Consensus 82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~ 161 (328)
+|++++.+++++..|+|+.+. ...+.||||+.++++.. .+....|+|||++.+.+ +.++|+||.+++|.+|+
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~-----~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~ 72 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI--PFRFQAGQFTKLGLPND-----DGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTP 72 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC--CCccCCCCeEEEeccCC-----CCCeeeecccccCCCCC-CeEEEEEEEecCCCCch
Confidence 478999999999999998764 57799999999998754 24567899999999865 89999999999999999
Q ss_pred hhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 162 HFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 162 ~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
||+++++||.|.+. ||+|+|.+++. ..++++||||||||||++++++++.... +..+++|+|++|+.+|+++.+||+
T Consensus 73 ~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~ 151 (241)
T cd06195 73 RLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVRYAEELAYQDEIE 151 (241)
T ss_pred HHhcCCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccCCHHHhhhHHHHH
Confidence 99999999999999 99999987764 4689999999999999999999998542 347899999999999999999999
Q ss_pred HHHHh-CCCeEEEEEEeCCCCCCCCcccccCHHHH----hhcCCC--CCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 240 ILAAS-HPNLKVFYTVDNPTKNWKGGVGYISKDTA----LKGLPS--PSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 240 ~l~~~-~~~~~v~~~~~~~~~~~~g~~g~i~~~~l----~~~~~~--~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
+|+++ +++|++++++++++..| +..|+++..+. .+.+.. ..++..||+|||++|+++++
T Consensus 152 ~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~------------- 217 (241)
T cd06195 152 ALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQ------------- 217 (241)
T ss_pred HHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHH-------------
Confidence 99988 56799999998877766 67788875433 222221 22457899999999999998
Q ss_pred HHHhhcCCCC------CCeEe
Q 020296 313 GILKDLGYTE------QMVYK 327 (328)
Q Consensus 313 ~~L~~~G~~~------~~I~~ 327 (328)
+.|+++|+++ .|||.
T Consensus 218 ~~l~~~G~~~~~~~~~~~~~~ 238 (241)
T cd06195 218 ELLKEKGFSKNHRRKPGNITV 238 (241)
T ss_pred HHHHHcCCCccccCCCceEEE
Confidence 9999999999 88874
No 24
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=5.8e-40 Score=293.01 Aligned_cols=229 Identities=22% Similarity=0.382 Sum_probs=198.6
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCC--CCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSA--KLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~--~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~ 155 (328)
|+.++|++++.+++++..|+|+.+... ...+.||||+.++++.. +....|+||+++.+.+ +.++|+|+.++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~------g~~~~r~ysi~s~~~~-~~l~~~i~~~~ 73 (241)
T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPID------GEEVRRSYSICSSPGD-DELRITVKRVP 73 (241)
T ss_pred CceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecC------CCeeeeeeeecCCCCC-CcEEEEEEEcC
Confidence 357899999999999999999998522 25799999999999854 4567899999998765 48999999999
Q ss_pred CCccchhhh-cCCCCCEEEEEceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296 156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL 233 (328)
Q Consensus 156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~ 233 (328)
+|.+|.||+ ++++|++|.+.||+|.|.+.++ ..++++||||||||||++++++++.+... ..+++|+|++|+.++++
T Consensus 74 ~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~-~~~v~l~~~~r~~~~~~ 152 (241)
T cd06214 74 GGRFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP-ASRVTLVYGNRTEASVI 152 (241)
T ss_pred CCccchhHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC-CCcEEEEEEeCCHHHhh
Confidence 999999998 7999999999999999988765 57899999999999999999999987642 47899999999999999
Q ss_pred hHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC---CCCCcEEEEECChhhHHhhhcccccCCCcc
Q 020296 234 LKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS---PSDDALILVCGPPGMMKHVSGEKAKDYSQG 309 (328)
Q Consensus 234 ~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~---~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg 309 (328)
+.+||++|++.++ ++++++++++++..|.+..|+++++.+.+.+.. +.++..||+|||+.|++.+.
T Consensus 153 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~---------- 222 (241)
T cd06214 153 FREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVE---------- 222 (241)
T ss_pred HHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHH----------
Confidence 9999999998888 499888888877778778899987776554431 23458999999999999998
Q ss_pred hHHHHHhhcCCCCCCeEe
Q 020296 310 ELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 310 ~~~~~L~~~G~~~~~I~~ 327 (328)
+.|++.|+++++||.
T Consensus 223 ---~~l~~~G~~~~~i~~ 237 (241)
T cd06214 223 ---AALLELGVPAERIHR 237 (241)
T ss_pred ---HHHHHcCCCHHHeec
Confidence 999999999999984
No 25
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=4.4e-40 Score=290.56 Aligned_cols=220 Identities=25% Similarity=0.449 Sum_probs=191.9
Q ss_pred EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296 83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~ 162 (328)
|+++++++++++.++|+.+.. ..++||||+.++++.. + ...|+|||+|.+.+.+.++|+||.+++|.+|+|
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~--~~~~pGq~i~l~~~~~------~-~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~ 71 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP--LPFWAGQYVNVTVPGR------P-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNA 71 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC--CCcCCCceEEEEcCCC------C-CcceeccccCCCCCCCEEEEEEEeCCCCcchHH
Confidence 578899999999999998753 6899999999998753 2 267999999998877899999999989999999
Q ss_pred hhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296 163 FAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241 (328)
Q Consensus 163 L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l 241 (328)
|++ +++||+|.|.||+|.+.+.++..++++||||||||||+++|++++..+. ...+|+|+|++|+.+++++.++|++|
T Consensus 72 l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~l~~~ 150 (224)
T cd06187 72 LHDELKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYDLEGLLAL 150 (224)
T ss_pred HhhcCccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcChHHHHHH
Confidence 996 9999999999999998887655689999999999999999999998764 34689999999999999999999999
Q ss_pred HHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296 242 AASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT 321 (328)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~ 321 (328)
+++++++++++++++++..|.+..|++++.+ .+.... .++..||+|||++|+++++ +.|+++|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~-~~~~~v~vcGp~~~~~~v~-------------~~l~~~G~~ 215 (224)
T cd06187 151 AARHPWLRVVPVVSHEEGAWTGRRGLVTDVV-GRDGPD-WADHDIYICGPPAMVDATV-------------DALLARGAP 215 (224)
T ss_pred HHhCCCeEEEEEeCCCCCccCCCcccHHHHH-HHhccc-cccCEEEEECCHHHHHHHH-------------HHHHHcCCC
Confidence 9999999998888876666888889998544 433332 2357899999999999998 999999999
Q ss_pred CCCeEe
Q 020296 322 EQMVYK 327 (328)
Q Consensus 322 ~~~I~~ 327 (328)
+++||.
T Consensus 216 ~~~i~~ 221 (224)
T cd06187 216 PERIHF 221 (224)
T ss_pred HHHeec
Confidence 999984
No 26
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=4e-40 Score=301.36 Aligned_cols=227 Identities=25% Similarity=0.417 Sum_probs=187.8
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCC---CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP---SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLL 150 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~---~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~ 150 (328)
+|.-|++++|++++++++++..|+|++.. .....++||||+.++++.. + .||||+++.+.+.+.++|+
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~---~~pySias~p~~~~~l~l~ 71 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV------G---EVPISICSSPTRKGFFELC 71 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC------C---ceeeEecCCCCCCCEEEEE
Confidence 35668889999999999999888888743 2346799999999998643 2 3799999998777999999
Q ss_pred EEEeCCCccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC
Q 020296 151 IKVYPEGKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP 229 (328)
Q Consensus 151 Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~ 229 (328)
||.. |.+|++|+++++||+|.|+||+|. |.++....++++||||||||||+++|+++++....+..+|+|+|++|+.
T Consensus 72 Ik~~--G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~ 149 (289)
T PRK08345 72 IRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYY 149 (289)
T ss_pred EEeC--ChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCH
Confidence 9987 999999999999999999999998 6554444579999999999999999999988764345789999999999
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCC------------cccccCHHHHhhcCCCCCCCcEEEEECChhhHHh
Q 020296 230 DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKG------------GVGYISKDTALKGLPSPSDDALILVCGPPGMMKH 297 (328)
Q Consensus 230 ~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g------------~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~ 297 (328)
+|+++.+||++|++++++|+++.++++++ .|.+ ..|++.+ .+.+...++ .+..||+|||++|+++
T Consensus 150 ~d~~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~~~~-~~~~vyiCGP~~m~~~ 226 (289)
T PRK08345 150 EDLLFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTD-LFREANTDP-KNTYAAICGPPVMYKF 226 (289)
T ss_pred HHhhHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhh-hhhhcCCCc-cccEEEEECCHHHHHH
Confidence 99999999999998889999999888743 3322 2456653 333333333 3478999999999999
Q ss_pred hhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 298 VSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 298 v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
++ +.|+++|+++++||.
T Consensus 227 v~-------------~~L~~~Gv~~~~i~~ 243 (289)
T PRK08345 227 VF-------------KELINRGYRPERIYV 243 (289)
T ss_pred HH-------------HHHHHcCCCHHHEEE
Confidence 98 999999999999985
No 27
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=2.3e-39 Score=290.71 Aligned_cols=224 Identities=22% Similarity=0.339 Sum_probs=197.0
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~ 154 (328)
+..|.+++|.++++.++++..|+|+.+......|+||||+.+.++.+ +..+.|.||++|.|.+++.+.|.||+.
T Consensus 2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~------~~~~~R~YSl~s~p~~~~~~~isVk~~ 75 (266)
T COG1018 2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNG------GEPLLRAYSLSSAPDEDSLYRISVKRE 75 (266)
T ss_pred CCceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCC------CceeeEEEEeccCCCCCceEEEEEEEe
Confidence 45789999999999999999999999874444799999999999886 558999999999999888999999999
Q ss_pred CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296 155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL 233 (328)
Q Consensus 155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~ 233 (328)
++|.+|+||| ++++||+|.+.+|.|.|.++.....+++|||||+|||||++|++++.... . .+|.|+|++|+.+++.
T Consensus 76 ~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-~-~~v~l~h~~R~~~~~a 153 (266)
T COG1018 76 DGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-P-ADVVLVHAARTPADLA 153 (266)
T ss_pred CCCcccHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-C-CCEEEEEecCChhhcc
Confidence 9899999999 99999999999999999998755668999999999999999999988763 3 7899999999999999
Q ss_pred hHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 234 LKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 234 ~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
|.+| +.+..++|+ ..+..+.+ |....|+++...+....++. . ..+|+|||.+||++++
T Consensus 154 f~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~-~-r~~y~CGp~~fm~av~------------- 212 (266)
T COG1018 154 FRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPDG-G-REVYLCGPGPFMQAVR------------- 212 (266)
T ss_pred hhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCCC-C-CEEEEECCHHHHHHHH-------------
Confidence 9999 999999998 66655554 33456888876666554443 2 8999999999999998
Q ss_pred HHHhhcCCCCCCeEe
Q 020296 313 GILKDLGYTEQMVYK 327 (328)
Q Consensus 313 ~~L~~~G~~~~~I~~ 327 (328)
..|+++|++.++||.
T Consensus 213 ~~l~~~g~~~~~vh~ 227 (266)
T COG1018 213 LALEALGVPDDRVHL 227 (266)
T ss_pred HHHHHcCCChhcEEE
Confidence 999999999999985
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=8.6e-40 Score=287.99 Aligned_cols=220 Identities=29% Similarity=0.517 Sum_probs=189.3
Q ss_pred EEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhh
Q 020296 85 DTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA 164 (328)
Q Consensus 85 ~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~ 164 (328)
+++.++++++.++|+.+. ...+.||||+.++++.. +....|+|||++.+.+.+.++|+||.+++|.+|+||+
T Consensus 2 ~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~ 73 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN--GFSFKPGQYVDLHLPGD------GRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLH 73 (223)
T ss_pred ceEEecCCeEEEEEecCC--CCCcCCCcEEEEEecCC------CCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHh
Confidence 567889999999999874 57899999999999764 4568999999999877799999999999999999999
Q ss_pred cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHh
Q 020296 165 SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244 (328)
Q Consensus 165 ~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~ 244 (328)
++++||+|.++||+|+|.+.....++++||||||||||+++|++++.... +..+++|+|++|+.+++++.+||++|++.
T Consensus 74 ~~~~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~ 152 (223)
T cd00322 74 DLKPGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLFLDELEELAKE 152 (223)
T ss_pred cCCCCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhHHHHHHHHHHh
Confidence 99999999999999998666566789999999999999999999998763 34789999999999999999999999998
Q ss_pred CCCeEEEEEEeCCCCCCCCcccccCH-HHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCC
Q 020296 245 HPNLKVFYTVDNPTKNWKGGVGYISK-DTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQ 323 (328)
Q Consensus 245 ~~~~~v~~~~~~~~~~~~g~~g~i~~-~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~ 323 (328)
+++++++++++++...+.+..+++.. +.+...... ..+..+|+|||++|++.++ +.|.++|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yvCGp~~m~~~~~-------------~~L~~~gv~~~ 218 (223)
T cd00322 153 GPNFRLVLALSRESEAKLGPGGRIDREAEILALLPD-DSGALVYICGPPAMAKAVR-------------EALVSLGVPEE 218 (223)
T ss_pred CCCeEEEEEecCCCCCCCcccceeeHHHHHHhhccc-ccCCEEEEECCHHHHHHHH-------------HHHHHcCCCHH
Confidence 88899999998877777666666542 223332222 3468999999999999998 99999999999
Q ss_pred CeEe
Q 020296 324 MVYK 327 (328)
Q Consensus 324 ~I~~ 327 (328)
+||.
T Consensus 219 ~i~~ 222 (223)
T cd00322 219 RIHT 222 (223)
T ss_pred Hccc
Confidence 9873
No 29
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=1e-39 Score=289.86 Aligned_cols=221 Identities=27% Similarity=0.451 Sum_probs=189.4
Q ss_pred EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296 83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~ 162 (328)
|++++.++++++.|+|+.+. ...|+||||+.++++.. ...|+|||++.+.+.+.++|+||.+++|.+|++
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~ 70 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDG--PADFLPGQYALLALPGV--------EGARAYSMANLANASGEWEFIIKRKPGGAASNA 70 (232)
T ss_pred CCceEEcCCCEEEEEEEcCC--ccccCCCCEEEEECCCC--------CcccCccCCcCCCCCCEEEEEEEEcCCCcchHH
Confidence 46789999999999999775 35799999999998643 267999999998777899999999999999999
Q ss_pred hhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC-CCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296 163 FAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP-DDNTQVSLLYGNISPDDILLKQKLDI 240 (328)
Q Consensus 163 L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~-~~~~~i~L~~~~r~~~d~~~~~el~~ 240 (328)
|++ +++||+|.|+||+|.+.+.++..++++||||||||||+++|++++.+.+ ++..+++|+|++|+.+|+++.+||++
T Consensus 71 l~~~~~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~ 150 (232)
T cd06190 71 LFDNLEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSA 150 (232)
T ss_pred HhhcCCCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHH
Confidence 985 7999999999999998776655689999999999999999999998753 23478999999999999999999999
Q ss_pred HHHhCCCeEEEEEEeCCCC----CCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh
Q 020296 241 LAASHPNLKVFYTVDNPTK----NWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK 316 (328)
Q Consensus 241 l~~~~~~~~v~~~~~~~~~----~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~ 316 (328)
|.+.+++++++++++++.. .|.+..|+++ +.+.+.+.....+..||+|||++|++++. ..|.
T Consensus 151 l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~-~~l~~~~~~~~~~~~vyiCGp~~m~~~v~-------------~~l~ 216 (232)
T cd06190 151 LVALGARLRVTPAVSDAGSGSAAGWDGPTGFVH-EVVEATLGDRLAEFEFYFAGPPPMVDAVQ-------------RMLM 216 (232)
T ss_pred HHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHH-HHHHhhccCCccccEEEEECCHHHHHHHH-------------HHHH
Confidence 9998888999988876543 4788889998 46666655433468999999999999997 8999
Q ss_pred hcCCC-CCCeEe
Q 020296 317 DLGYT-EQMVYK 327 (328)
Q Consensus 317 ~~G~~-~~~I~~ 327 (328)
+.|+. +++||.
T Consensus 217 ~~g~~~~~~i~~ 228 (232)
T cd06190 217 IEGVVPFDQIHF 228 (232)
T ss_pred HhCCCChHheee
Confidence 88865 888874
No 30
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.5e-39 Score=286.47 Aligned_cols=219 Identities=21% Similarity=0.408 Sum_probs=188.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
+++|++++.+++++.+++|+.++ ...+.||||+.++++.. . ..|+|||++.+.+.+.++|+||.+++|.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~~~l~~~~~------~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~ 71 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDR--PIAYKAGQYAELTLPGL------P--AARSYSFANAPQGDGQLSFHIRKVPGGAF 71 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCC--CCCcCCCCEEEEEeCCC------C--cccccccCCCCCCCCEEEEEEEECCCCcc
Confidence 57899999999999999998764 46789999999998643 2 68999999998777899999999999999
Q ss_pred chhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 160 SQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 160 S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
|++|+ .+++||+|.++||+|.|.+.+ ..++++||||||||||+++|++++..+. ..++|+++|++|+.+|+++.+||
T Consensus 72 s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~~l 149 (227)
T cd06213 72 SGWLFGADRTGERLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYALDEI 149 (227)
T ss_pred hHHHHhcCCCCCEEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhccHHHH
Confidence 99996 699999999999999998764 3479999999999999999999998764 34689999999999999999999
Q ss_pred HHHHHhC-CCeEEEEEEeCCC--CCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 239 DILAASH-PNLKVFYTVDNPT--KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 239 ~~l~~~~-~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
+++++++ ++++++.+++++. ..|.+..|++++ .+.+.. ..+..||+|||++|+++++ ..|
T Consensus 150 ~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~-~l~~~~---~~~~~v~~CGp~~~~~~~~-------------~~l 212 (227)
T cd06213 150 AAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTE-HIAEVL---LAATEAYLCGPPAMIDAAI-------------AVL 212 (227)
T ss_pred HHHHHhccCCeEEEEEecCCCCCCCccCCcccHHH-HHHhhc---cCCCEEEEECCHHHHHHHH-------------HHH
Confidence 9999775 4599888887653 347788888875 444444 2357899999999999998 999
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
.++|+++++||.
T Consensus 213 ~~~G~~~~~i~~ 224 (227)
T cd06213 213 RALGIAREHIHA 224 (227)
T ss_pred HHcCCCHHHEec
Confidence 999999999984
No 31
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=2.7e-39 Score=309.36 Aligned_cols=236 Identities=27% Similarity=0.418 Sum_probs=197.6
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-----------------------CCCCCcccccc
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD-----------------------AEGNTKYVVRP 134 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~-----------------------~~~~~~~~~Rp 134 (328)
..+++|++++.++++++.++|+.++.....|+||||+.++++.... ....+....|+
T Consensus 133 ~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 212 (409)
T PRK05464 133 KWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRA 212 (409)
T ss_pred EEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeee
Confidence 3479999999999999999999986445689999999999864200 00012357899
Q ss_pred ccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHH
Q 020296 135 YTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQ 205 (328)
Q Consensus 135 YTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ 205 (328)
|||+|.|.+.+.++|+||. .++|.+|.||+++++||+|.|.||+|+|.+.. ..++++||||||||||+++
T Consensus 213 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIaP~~s 291 (409)
T PRK05464 213 YSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRS 291 (409)
T ss_pred eccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccChhHHHH
Confidence 9999999877899999997 47899999999999999999999999987763 5689999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCC--CC
Q 020296 206 VIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPS--PS 281 (328)
Q Consensus 206 ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~--~~ 281 (328)
|++++++..+...+++|+|++|+.+|+++.+||++|.+++++++++++++++ .+.|.+..|++++.+.+..+.. ..
T Consensus 292 ml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~~~~ 371 (409)
T PRK05464 292 HIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYENYLKDHEAP 371 (409)
T ss_pred HHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHHHhhhhhcCCC
Confidence 9998877644457899999999999999999999999999999999888764 3568888999997655544421 12
Q ss_pred CCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 282 DDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 282 ~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
.+..||+|||++|++++. +.|+++|+++++||.
T Consensus 372 ~~~~vyiCGP~~m~~av~-------------~~L~~~Gv~~~~I~~ 404 (409)
T PRK05464 372 EDCEYYMCGPPMMNAAVI-------------KMLKDLGVEDENILL 404 (409)
T ss_pred CCeEEEEECCHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence 357899999999999998 999999999999984
No 32
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=7.4e-39 Score=282.45 Aligned_cols=215 Identities=24% Similarity=0.423 Sum_probs=181.2
Q ss_pred EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296 83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~ 162 (328)
|++++.+++++..++|+.++ ...|+||||+.++++.. ..|+|||+|.+.+.+.++|+||.+++|.+|+|
T Consensus 1 V~~~~~~~~~~~~i~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~ 69 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDR--PLPYLPGQYVNLRRAGG---------LARSYSPTSLPDGDNELEFHIRRKPNGAFSGW 69 (222)
T ss_pred CceeeecCCCEEEEEEecCC--CCCcCCCCEEEEEcCCC---------CceeeecCCCCCCCCEEEEEEEeccCCccchH
Confidence 56889999999999999874 46799999999998643 46999999998877899999999999999999
Q ss_pred hhc-CCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296 163 FAS-LKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240 (328)
Q Consensus 163 L~~-l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~ 240 (328)
|++ +++||.|.|.||+|.+.+.+ ...++++||||||||||+++++++++... +..+|+|+|++|+.+++++.+||++
T Consensus 70 l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~ 148 (222)
T cd06194 70 LGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEIRLVHGARDPDDLYLHPALLW 148 (222)
T ss_pred HHhccCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccEEEEEecCChhhccCHHHHHH
Confidence 997 79999999999999987654 45689999999999999999999988653 3578999999999999999999999
Q ss_pred HHHhCCCeEEEEEEeCCCCCCCC-cccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 241 LAASHPNLKVFYTVDNPTKNWKG-GVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 241 l~~~~~~~~v~~~~~~~~~~~~g-~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
|+++++++++++++++++..|.. ..+++ .+.+.....+..+|+|||++|+++++ +.|.+.|
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vyicGp~~m~~~~~-------------~~L~~~G 210 (222)
T cd06194 149 LAREHPNFRYIPCVSEGSQGDPRVRAGRI-----AAHLPPLTRDDVVYLCGAPSMVNAVR-------------RRAFLAG 210 (222)
T ss_pred HHHHCCCeEEEEEEccCCCCCcccccchh-----hhhhccccCCCEEEEeCCHHHHHHHH-------------HHHHHcC
Confidence 99989999999988876544321 12222 22222223458999999999999998 9999999
Q ss_pred CCCCCeEe
Q 020296 320 YTEQMVYK 327 (328)
Q Consensus 320 ~~~~~I~~ 327 (328)
+++++||.
T Consensus 211 v~~~~i~~ 218 (222)
T cd06194 211 APMKRIYA 218 (222)
T ss_pred CCHHHeee
Confidence 99999984
No 33
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=5.7e-39 Score=340.07 Aligned_cols=241 Identities=28% Similarity=0.572 Sum_probs=212.1
Q ss_pred CCCCccCCCCCeEEEEEEEEE---EecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC
Q 020296 67 TDPKIALNPDKWIGFKLQDTA---RVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE 142 (328)
Q Consensus 67 ~~~~~~l~~~~~~~~~v~~~~---~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~ 142 (328)
++++..+++..|.+++|.+++ +.+++++.|+|++|. ...+++.|||||.++++.. +....|+|||+|.|+
T Consensus 903 ~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~------g~~~~R~YS~~S~p~ 976 (1167)
T PTZ00306 903 QKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWD------GQQLIGYYSPITLPD 976 (1167)
T ss_pred hccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeC------CeEEEEEeccCCCCC
Confidence 345678889999999999998 569999999999986 4457899999999998654 556789999999998
Q ss_pred CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceee----------ccccCCCCCceEEEEecCccHHHHHHHHHHHHh
Q 020296 143 AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE----------KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILK 212 (328)
Q Consensus 143 ~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G----------~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~ 212 (328)
+.+.++|+|| .++|.+|+||+++++||+|.|+||+| .|.++++..++++|||||||||||++|++++++
T Consensus 977 ~~~~i~l~Vr-~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~ 1055 (1167)
T PTZ00306 977 DLGVISILAR-GDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALK 1055 (1167)
T ss_pred CCCeEEEEEE-cCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHh
Confidence 8899999998 56899999999999999999999877 355555566899999999999999999999987
Q ss_pred CCC--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEE
Q 020296 213 NPD--DNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVC 289 (328)
Q Consensus 213 ~~~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vC 289 (328)
++. +.++|+|+|++|+.+|++|++||++|++++|+ |+++++++++++.|.+..|++++.++++.++.+..+..||+|
T Consensus 1056 ~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiC 1135 (1167)
T PTZ00306 1056 KPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAIC 1135 (1167)
T ss_pred CcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEe
Confidence 652 34689999999999999999999999999996 999999998888898899999988888887665556789999
Q ss_pred CChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 290 GPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 290 GP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
||++|++++. +.|+++|+++++||-
T Consensus 1136 GP~~mv~~v~-------------~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306 1136 GPPVMQRAVK-------------ADLLALGYNMELVRT 1160 (1167)
T ss_pred CCHHHHHHHH-------------HHHHHcCCCHHHeEE
Confidence 9999999998 999999999999984
No 34
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=6.8e-39 Score=306.27 Aligned_cols=236 Identities=25% Similarity=0.403 Sum_probs=196.8
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-----------------------CCCCCcccccc
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD-----------------------AEGNTKYVVRP 134 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~-----------------------~~~~~~~~~Rp 134 (328)
..+++|++++.++++++.++|+.++.....|+||||+.++++.... ....+....|+
T Consensus 129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 208 (405)
T TIGR01941 129 KWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRA 208 (405)
T ss_pred eeeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcccee
Confidence 3468999999999999999999886445689999999999863200 00012346799
Q ss_pred ccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHH
Q 020296 135 YTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQ 205 (328)
Q Consensus 135 YTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ 205 (328)
|||+|.|.+.+.++|+||. +++|.+|.||+++++||+|.+.||+|.|.+.+ ..++++||||||||||+++
T Consensus 209 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIaP~ls 287 (405)
T TIGR01941 209 YSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRS 287 (405)
T ss_pred ecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcCcchHHH
Confidence 9999999888999999997 57899999999999999999999999987764 4578999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCC--CC
Q 020296 206 VIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPS--PS 281 (328)
Q Consensus 206 ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~--~~ 281 (328)
|+++++...+...+++|+|++|+.+|+++.+||++|++++++++++.+++++ ++.|.|..|++++.+.++.+.. ..
T Consensus 288 mi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~~~~ 367 (405)
T TIGR01941 288 HIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLKDHDAP 367 (405)
T ss_pred HHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHHHHhhhcccCCC
Confidence 9998776433456899999999999999999999999999999999888764 3568889999986554443321 12
Q ss_pred CCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 282 DDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 282 ~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
.+..||+|||++|++++. +.|+++|+++++||.
T Consensus 368 ~~~~vylCGP~~m~~av~-------------~~L~~~Gv~~~~I~~ 400 (405)
T TIGR01941 368 EDCEFYMCGPPMMNAAVI-------------KMLEDLGVERENILL 400 (405)
T ss_pred CCeEEEEeCCHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence 357899999999999998 999999999999984
No 35
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.5e-38 Score=279.77 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=181.8
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC-Cc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE-GK 158 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~-G~ 158 (328)
.++|++++.+++++..|+|+.+. ...|.||||+.++++.. +.....|+|||+|.+.+ +.++|+||.+++ |.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~-----~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~ 73 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPE--GYDFTPGQATEVAIDKP-----GWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDG 73 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCC--cCCCCCCCEEEEEeeCC-----CCCccccccccccCCCC-CeEEEEEEEcCCCCc
Confidence 47899999999999999999875 36799999999998754 23457899999999864 899999999876 78
Q ss_pred cchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 159 MSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 159 ~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
+|++|+++++||+|.++||+|+|.+. ++++||||||||||+++|++++.... +..+++|+|++|+.+|+++.+||
T Consensus 74 ~s~~l~~l~~G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el 148 (218)
T cd06196 74 VTEQLGRLQPGDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG-KLEGNTLIFANKTEKDIILKDEL 148 (218)
T ss_pred HhHHHHhCCCCCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhCC-CCceEEEEEecCCHHHHhhHHHH
Confidence 99999999999999999999998653 57899999999999999999998753 34689999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL 318 (328)
Q Consensus 239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~ 318 (328)
++|. +++++++++++... ....|+++.+.+++.+... ...||+|||++|++++. +.|.++
T Consensus 149 ~~l~----~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~~--~~~vyiCGp~~m~~~~~-------------~~l~~~ 208 (218)
T cd06196 149 EKML----GLKFINVVTDEKDP-GYAHGRIDKAFLKQHVTDF--NQHFYVCGPPPMEEAIN-------------GALKEL 208 (218)
T ss_pred HHhh----cceEEEEEcCCCCC-CeeeeEECHHHHHHhcCCC--CCEEEEECCHHHHHHHH-------------HHHHHc
Confidence 9984 36677777654322 2257899987887765432 36899999999999998 999999
Q ss_pred CCCCCCeEe
Q 020296 319 GYTEQMVYK 327 (328)
Q Consensus 319 G~~~~~I~~ 327 (328)
|+++++||.
T Consensus 209 G~~~~~i~~ 217 (218)
T cd06196 209 GVPEDSIVF 217 (218)
T ss_pred CCCHHHEec
Confidence 999999973
No 36
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=1.3e-38 Score=286.19 Aligned_cols=218 Identities=28% Similarity=0.548 Sum_probs=187.5
Q ss_pred EEEEEEecCCeeEEEEEcCCC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 83 LQDTARVSHNSHLFRFSFDPS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
|++++.+++++..|+|+++.. ....|.||||+.++++.. + .||||+++.+.+++.++|.||.. |.+|
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~------~---~~pySi~s~~~~~~~l~~~Ik~~--G~~S 69 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGV------G---EAPISISSDPTRRGPLELTIRRV--GRVT 69 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCC------C---ccceEecCCCCCCCeEEEEEEeC--Chhh
Confidence 578899999999999998752 247899999999998754 2 38999999997779999999987 8899
Q ss_pred hhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
++|+++++||+|.+.||+|+ |.++....++++||||||||||+++|++++++..++..+++|+|++|+.+++++.++|+
T Consensus 70 ~~L~~l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~ 149 (253)
T cd06221 70 EALHELKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELK 149 (253)
T ss_pred HHHHcCCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHH
Confidence 99999999999999999998 44433356899999999999999999999997644457899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
+|.++ ++++++++++++.+.|.+..|++.+ .+.+....+ .+..||+|||++|++++. ..|++.|
T Consensus 150 ~l~~~-~~~~~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyicGp~~mv~~~~-------------~~L~~~G 213 (253)
T cd06221 150 EWAKR-SDVEVILTVDRAEEGWTGNVGLVTD-LLPELTLDP-DNTVAIVCGPPIMMRFVA-------------KELLKLG 213 (253)
T ss_pred HHHhc-CCeEEEEEeCCCCCCccCCccccch-hHHhcCCCc-CCcEEEEECCHHHHHHHH-------------HHHHHcC
Confidence 99987 7899998888877778788899885 455444333 357899999999999998 9999999
Q ss_pred CCCCCeEe
Q 020296 320 YTEQMVYK 327 (328)
Q Consensus 320 ~~~~~I~~ 327 (328)
+++++||.
T Consensus 214 v~~~~i~~ 221 (253)
T cd06221 214 VPEEQIWV 221 (253)
T ss_pred CCHHHEEE
Confidence 99999984
No 37
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=3.6e-38 Score=282.53 Aligned_cols=220 Identities=18% Similarity=0.255 Sum_probs=179.2
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
.|.+++|++++.++++++.|+|+.+. ..|+||||+.+.++.. +....|+|||+|.|.+ +.++|+||.+++
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~---~~~~pGQfv~l~~~~~------g~~~~R~ySias~p~~-~~l~~~ik~~~~ 72 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV---DPFTAGQFTKLGLEID------GERVQRAYSYVNAPDN-PDLEFYLVTVPE 72 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC---CCCCCCCEEEEEEecC------CcEEEeeecccCCCCC-CeEEEEEEEeCC
Confidence 68899999999999999999998762 3689999999998654 4457899999999864 689999999999
Q ss_pred CccchhhhcCCCCCEEEEEcee-eccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296 157 GKMSQHFASLKPGDVVEVKGPI-EKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL 234 (328)
Q Consensus 157 G~~S~~L~~l~~Gd~v~v~GP~-G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~ 234 (328)
|.+|+||+++++||+|.+.||. |.|.++.. ..++++|||||||||||++|++++... ++..+++|+|++|+.+|++|
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~-~~~~~v~l~~g~r~~~d~~~ 151 (248)
T PRK10926 73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL-ERFKNLVLVHAARYAADLSY 151 (248)
T ss_pred CCcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh-CCCCcEEEEEeCCcHHHHHH
Confidence 9999999999999999999987 55655543 347999999999999999999998754 23468999999999999999
Q ss_pred HHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHh-----hcCC--CCCCCcEEEEECChhhHHhhhcccccCC
Q 020296 235 KQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTAL-----KGLP--SPSDDALILVCGPPGMMKHVSGEKAKDY 306 (328)
Q Consensus 235 ~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~-----~~~~--~~~~~~~v~vCGP~~m~~~v~g~~~~~~ 306 (328)
.+||++|+++++ +++++.++++++ .+.+..|++++ ++. +.+. ...++..+|+|||++|++++.
T Consensus 152 ~~el~~l~~~~~~~~~v~~~~s~~~-~~~~~~G~v~~-~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~------- 222 (248)
T PRK10926 152 LPLMQELEQRYEGKLRIQTVVSRET-APGSLTGRVPA-LIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQ------- 222 (248)
T ss_pred HHHHHHHHHhCcCCEEEEEEECCCC-CCCCcCCccch-hhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHH-------
Confidence 999999999886 699998888743 23345788874 332 1111 112357899999999999998
Q ss_pred CcchHHHHHhh-cCCCC
Q 020296 307 SQGELSGILKD-LGYTE 322 (328)
Q Consensus 307 ~qg~~~~~L~~-~G~~~ 322 (328)
+.|++ .|+++
T Consensus 223 ------~~l~~~~~~~~ 233 (248)
T PRK10926 223 ------QLLKETRQMTK 233 (248)
T ss_pred ------HHHHHhcCccc
Confidence 77754 66754
No 38
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=3.2e-38 Score=291.05 Aligned_cols=238 Identities=20% Similarity=0.268 Sum_probs=187.5
Q ss_pred cCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCC--
Q 020296 72 ALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAK-- 144 (328)
Q Consensus 72 ~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~-- 144 (328)
.-.+.....++|++++.++ +++..|+|+.+. .+.|.||||+.+.++.......+.....|+|||+|.|.+.
T Consensus 18 ~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~--~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~ 95 (307)
T PLN03116 18 LYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDF 95 (307)
T ss_pred eccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC--CCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCC
Confidence 3345556689999999999 899999999764 5789999999998653200000122357999999998432
Q ss_pred --CeEEEEEEEe-------------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEEecCccHHHHHHHH
Q 020296 145 --GHFDLLIKVY-------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMIAGGTGITPMLQVI 207 (328)
Q Consensus 145 --~~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlIAgGtGItP~~~ll 207 (328)
..++|+||+. ++|.+|+||+++++||+|.|+||+|.|.+.+ +..++++|||||||||||++|+
T Consensus 96 ~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml 175 (307)
T PLN03116 96 DGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFL 175 (307)
T ss_pred CCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHH
Confidence 3799999987 7899999999999999999999999987643 4457999999999999999999
Q ss_pred HHHHhCCC----CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC----C
Q 020296 208 EAILKNPD----DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL----P 278 (328)
Q Consensus 208 ~~l~~~~~----~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~----~ 278 (328)
++++.... ...+++|+|++|+.+|++|.+||++|+++++ +|+++.+++++...|.+..|++++ .+.+.. .
T Consensus 176 ~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~l~~~~~~~~~ 254 (307)
T PLN03116 176 RRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQD-KIEEYSDEIFK 254 (307)
T ss_pred HHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhh-HHHHHHHHHHh
Confidence 99875421 1357999999999999999999999999998 599999999888888888888874 443321 1
Q ss_pred CCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296 279 SPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT 321 (328)
Q Consensus 279 ~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~ 321 (328)
....+..||+|||++||+++.. .+.+++++.|.+
T Consensus 255 ~~~~~~~vYiCGp~~mv~~v~~---------~L~~~~~~~g~~ 288 (307)
T PLN03116 255 LLDNGAHIYFCGLKGMMPGIQD---------TLKRVAEERGES 288 (307)
T ss_pred hhcCCcEEEEeCCHHHHHHHHH---------HHHHHHHHcCcc
Confidence 1223578999999999998862 335667777754
No 39
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=5e-38 Score=283.77 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
+++|+++++++++++.|+|+.+ ..++||||+.++++.. + .||||+++.+ ++.++|+||.. |.+
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~----~~~~pGQfi~l~~~~~------~---~~pySi~~~~--~~~~~~~Ik~~--G~~ 71 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD----GPVKPGQFFEVSLPKV------G---EAPISVSDYG--DGYIDLTIRRV--GKV 71 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC----CCCCCCceEEEEeCCC------C---cceeeccCCC--CCEEEEEEEeC--Cch
Confidence 4899999999999999999865 3789999999998754 2 3899998874 57999999987 999
Q ss_pred chhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 160 SQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 160 S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
|++|+++++||+|.|+||+|+ |.+++...++++||||||||||+++++++++++.++.++++|+|++|+.+++++.+||
T Consensus 72 S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el 151 (263)
T PRK08221 72 TDEIFNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDL 151 (263)
T ss_pred hhHHHhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHH
Confidence 999999999999999999998 7776555689999999999999999999998765445799999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL 318 (328)
Q Consensus 239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~ 318 (328)
++|++++ ++++++++++..|.+..|++++.+.+..++.+ .+..||+|||++|+++++ ..|+++
T Consensus 152 ~~~~~~~---~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~-~~~~vylCGp~~mv~~~~-------------~~L~~~ 214 (263)
T PRK08221 152 KRWREKI---NLILTLDEGEEGYRGNVGLVTKYIPELTLKDI-DNMQVIVVGPPIMMKFTV-------------LEFLKR 214 (263)
T ss_pred HHHhhcC---cEEEEecCCCCCCccCccccChhhHhccCCCc-CCeEEEEECCHHHHHHHH-------------HHHHHc
Confidence 9998753 35556677777788889999964433223332 357899999999999998 899999
Q ss_pred CCCCCCeEe
Q 020296 319 GYTEQMVYK 327 (328)
Q Consensus 319 G~~~~~I~~ 327 (328)
|+++++||.
T Consensus 215 Gv~~~~i~~ 223 (263)
T PRK08221 215 GIKEENIWV 223 (263)
T ss_pred CCCHHHEEE
Confidence 999999984
No 40
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=288.16 Aligned_cols=213 Identities=18% Similarity=0.277 Sum_probs=179.8
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
..+++|++++.+++++..++|+.+. ...|.||||+.++++. + ..|+|||+|.|.+.+.++|+||.+++|
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~--~~~~~~GQfv~l~~~~-------~--~~R~ySias~p~~~~~l~~~I~~~~~G 159 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPER--PLRYRAGQHLVLWTAG-------G--VARPYSLASLPGEDPFLEFHIDCSRPG 159 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCC--cCCcCCCCEEEEecCC-------C--cccccccCcCCCCCCeEEEEEEEcCCC
Confidence 3469999999999999999998653 5689999999998642 2 579999999987778999999999999
Q ss_pred ccchhhhcCCCCCEEEEEceee-ccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296 158 KMSQHFASLKPGDVVEVKGPIE-KLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK 235 (328)
Q Consensus 158 ~~S~~L~~l~~Gd~v~v~GP~G-~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~ 235 (328)
.+|.+|+++++||+|.+.||.| .|.++++ ..++++||||||||||+++|++++++.. +..+++|+|++|+.+|+++.
T Consensus 160 ~~s~~l~~l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~ 238 (312)
T PRK05713 160 AFCDAARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLA 238 (312)
T ss_pred ccchhhhcCCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhH
Confidence 9999999999999999999997 4555543 4578999999999999999999998764 34689999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
+||++|++++++|++++++++ +++ +.+.+.... ..+..||+|||++|++++. +.|
T Consensus 239 ~el~~l~~~~~~~~~~~~~~~----------~~~-~~l~~~~~~-~~~~~vyiCGp~~mv~~~~-------------~~L 293 (312)
T PRK05713 239 EPLAALAGRHPQLSVELVTAA----------QLP-AALAELRLV-SRQTMALLCGSPASVERFA-------------RRL 293 (312)
T ss_pred HHHHHHHHHCCCcEEEEEECc----------chh-hhhhhccCC-CCCeEEEEeCCHHHHHHHH-------------HHH
Confidence 999999999999998877643 222 233332222 2347899999999999998 999
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
+++|+++++||.
T Consensus 294 ~~~Gv~~~~i~~ 305 (312)
T PRK05713 294 YLAGLPRNQLLA 305 (312)
T ss_pred HHcCCCHHHeee
Confidence 999999999984
No 41
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=8e-37 Score=275.65 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=180.0
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
.| ..+|+++.+.+++++.|+|+.+ ..++||||+.++++.. + .||||+++.+ .+.++|+||..
T Consensus 5 ~~-~~~v~~~~~~t~~~~~~~~~~~----~~~~pGQ~v~l~~~~~------~---~~pySi~~~~--~~~l~~~Vk~~-- 66 (261)
T TIGR02911 5 PF-KSEILEIIKHTDIEYTFRMSYD----GPVKPGQFFEVSLPKY------G---EAPISVSGIG--EGYIDLTIRRV-- 66 (261)
T ss_pred Cc-eEEEEEEeeccCCEEEEEcCCC----CCCCCCcEEEEEecCC------C---ccceecCCCC--CCeEEEEEEeC--
Confidence 45 4899999999999888888643 4689999999998754 2 3899998853 58999999987
Q ss_pred CccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296 157 GKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK 235 (328)
Q Consensus 157 G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~ 235 (328)
|.+|.+|+++++||+|.|+||+|+ |.++++..++++||||||||||+++|+++++++.++.++++|+|++|+.+|+++.
T Consensus 67 G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~ 146 (261)
T TIGR02911 67 GKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFK 146 (261)
T ss_pred chhhHHHHcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHH
Confidence 899999999999999999999998 7766655689999999999999999999998765445789999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
+||++|+.++ + ++++++.+.+.|.+..|+++..+.+..+.+. .+..||+|||++|+++++ +.|
T Consensus 147 ~eL~~l~~~~-~--~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~-~~~~v~lCGp~~mv~~~~-------------~~L 209 (261)
T TIGR02911 147 EDIAEWKGNI-N--LTLTLDEAEEDYKGNIGLVTKYIPELTLKDI-EEVQAIVVGPPIMMKFTV-------------QEL 209 (261)
T ss_pred HHHHHHHhcC-c--EEEEEcCCCCCCcCCeeccCHhHHhccCCCc-cceEEEEECCHHHHHHHH-------------HHH
Confidence 9999998753 3 4445566666788888999865433223333 347899999999999998 899
Q ss_pred hhcCCCCCCeEe
Q 020296 316 KDLGYTEQMVYK 327 (328)
Q Consensus 316 ~~~G~~~~~I~~ 327 (328)
+++|+++++||.
T Consensus 210 ~~~Gv~~~~i~~ 221 (261)
T TIGR02911 210 LKKGIKEENIWV 221 (261)
T ss_pred HHcCCCHHHEEE
Confidence 999999999986
No 42
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.1e-36 Score=273.00 Aligned_cols=210 Identities=32% Similarity=0.589 Sum_probs=188.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
.++|++++.+++++..++|+.+... +.++||||+.++.+.. ..||||+++.++++|.++|.|+.++.|.+
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~-~~~~pGQfv~l~~~~~---------~~~P~si~~~~~~~g~~~l~i~~~~~G~~ 78 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA-LTFKPGQFVMLRVPGG---------VRRPYSLASAPDDKGELELHIRVYEVGKV 78 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc-cccCCCcEEEEEeCCC---------cEEEeeeccCCCcCCcEEEEEEEEeCChH
Confidence 6899999999999999999998744 7899999999998753 88999999999988999999999999999
Q ss_pred chhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 160 SQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 160 S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
|.+++.+++||.|.++||+|++...++..+++++||||||++|++++++++.+++ +..+|+++|++|+++|+++.+||+
T Consensus 79 T~~i~~~k~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~~~el~ 157 (252)
T COG0543 79 TKYIFGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLLLDELE 157 (252)
T ss_pred HHHHhhccCCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhcccHHHHH
Confidence 9999999999999999999997776666677999999999999999999999887 678999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
++..+ +++++++ ++|.|.+|+++.+.+++.... +...+|+|||+.|++++. +.+.+.|
T Consensus 158 ~~~~~----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M~~~v~-------------~~~~~~g 215 (252)
T COG0543 158 ELAEK----EVHPVTD---DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAMVKAVR-------------EKLKEYG 215 (252)
T ss_pred HhhcC----cEEEEEC---CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHHHHHHH-------------HHHHhcC
Confidence 99864 5566655 789999999977888887655 468999999999999998 8999999
Q ss_pred CCC
Q 020296 320 YTE 322 (328)
Q Consensus 320 ~~~ 322 (328)
+..
T Consensus 216 ~~~ 218 (252)
T COG0543 216 VPI 218 (252)
T ss_pred Cch
Confidence 743
No 43
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1e-36 Score=278.69 Aligned_cols=221 Identities=23% Similarity=0.331 Sum_probs=178.8
Q ss_pred CCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC----CC
Q 020296 75 PDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA----KG 145 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~----~~ 145 (328)
++....++|++++.++ ++++.++|+.+. ...|.||||+.+..+.....+ ......|+|||+|.|.+ .+
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~-g~~~~~R~YSIas~p~~~~~~~~ 81 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG--KLPYLEGQSIGIIPPGTDAKN-GKPHKLRLYSIASSRYGDDGDGK 81 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCCC--cccccCCceEEEECCCcchhc-CCCCCceeeEecCCccccCCCCC
Confidence 4566679999999999 699999998743 578999999999865310000 12245799999998753 47
Q ss_pred eEEEEEEEeCC----------CccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCC
Q 020296 146 HFDLLIKVYPE----------GKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNP 214 (328)
Q Consensus 146 ~l~l~Vk~~~~----------G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~ 214 (328)
.++|+||..++ |.+|+||+++++||+|.|.||+|.|.+.+ +..++++|||||||||||++|+++++...
T Consensus 82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 161 (286)
T cd06208 82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK 161 (286)
T ss_pred EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence 99999999876 99999999999999999999999977654 33578999999999999999999988651
Q ss_pred ----CCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----CCCCc
Q 020296 215 ----DDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----PSDDA 284 (328)
Q Consensus 215 ----~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~~~~~ 284 (328)
+...+++|+|++|+.+|+++.++|++|++++++ ++++.++++++..|.+..|++++ .+.+.... ...+.
T Consensus 162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~i~~~~~~l~~~l~~~~~ 240 (286)
T cd06208 162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQD-RIAEYAEEIWNLLDKDNT 240 (286)
T ss_pred hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhh-HHHHhHHHHHHHHhcCCc
Confidence 234689999999999999999999999999885 99999999887888888899875 33321110 11346
Q ss_pred EEEEECChhhHHhhh
Q 020296 285 LILVCGPPGMMKHVS 299 (328)
Q Consensus 285 ~v~vCGP~~m~~~v~ 299 (328)
.||+|||++|++++.
T Consensus 241 ~vYiCGp~~m~~~v~ 255 (286)
T cd06208 241 HVYICGLKGMEPGVD 255 (286)
T ss_pred EEEEeCCchHHHHHH
Confidence 899999999999997
No 44
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=2.7e-36 Score=265.04 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=168.5
Q ss_pred cCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhh-cCCC
Q 020296 90 SHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA-SLKP 168 (328)
Q Consensus 90 s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~ 168 (328)
..+++.++|+.+.. ...++||||+.++++.. +....|||||++.+.+.+.++|+||.. |.+|++|+ ++++
T Consensus 6 ~~~~~~i~l~~~~~-~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~~~~~l~l~vk~~--G~~t~~l~~~l~~ 76 (216)
T cd06198 6 VRPTTTLTLEPRGP-ALGHRAGQFAFLRFDAS------GWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKP 76 (216)
T ss_pred ecceEEEEEeeCCC-CCCcCCCCEEEEEeCCC------CCCCCCCcEEecCCCCCCeEEEEEEeC--ChHHHHHHHhCCC
Confidence 34677788886542 27899999999998764 456889999999988778999999987 88999999 8999
Q ss_pred CCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCe
Q 020296 169 GDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248 (328)
Q Consensus 169 Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~ 248 (328)
||+|.|+||+|.|.+++. .++++||||||||||+++|++++.... +..+++|+|++|+.+++++.++|++|.+++ ++
T Consensus 77 G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~~ 153 (216)
T cd06198 77 GTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAA-GV 153 (216)
T ss_pred CCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhhHHHHHHHHHhc-Ce
Confidence 999999999999988765 789999999999999999999998764 347999999999999999999999999887 78
Q ss_pred EEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 249 KVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 249 ~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+++++.+. ...|.+..+ .+.+..... .+..||+|||++|+++++ ..|+++|+++++||.
T Consensus 154 ~~~~~~~~-~~~~~~~~~-----~~~~~~~~~-~~~~vyicGp~~m~~~v~-------------~~l~~~Gv~~~~I~~ 212 (216)
T cd06198 154 VLHVIDSP-SDGRLTLEQ-----LVRALVPDL-ADADVWFCGPPGMADALE-------------KGLRALGVPARRFHY 212 (216)
T ss_pred EEEEEeCC-CCcccchhh-----hhhhcCCCc-CCCeEEEECcHHHHHHHH-------------HHHHHcCCChHhcch
Confidence 88775543 222322111 111222222 358999999999999998 999999999999974
No 45
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=2.5e-36 Score=281.99 Aligned_cols=219 Identities=23% Similarity=0.319 Sum_probs=175.8
Q ss_pred CCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCcc-ccccccCCcCCC----CC
Q 020296 75 PDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKY-VVRPYTPISDTE----AK 144 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~-~~RpYTi~s~~~----~~ 144 (328)
+..-...+|++.+.+.. ++.+++|..+. ...+.+|||+.|..+.. +.+++. ..|+|||+|.+. +.
T Consensus 87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~--~~~f~~GQfv~I~~~g~---~~~g~p~~~R~YSIAS~p~~~~~~~ 161 (367)
T PLN03115 87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG--EIPYREGQSIGVIPDGI---DKNGKPHKLRLYSIASSALGDFGDS 161 (367)
T ss_pred cCCCeEEEEEeecccccCCCCCceEEEEEcCCC--CCCcCCCCEEEEEcCCc---CCCCCcCceeeeecCCCCcccCCCC
Confidence 44444689999998876 78888887553 57899999999987632 112333 579999999873 25
Q ss_pred CeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCC
Q 020296 145 GHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNP 214 (328)
Q Consensus 145 ~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~ 214 (328)
+.++|+||+. ..|.+|+||+++++||+|.|.||+|+|.+.+ +...+++|||||||||||++++++++...
T Consensus 162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~ 241 (367)
T PLN03115 162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241 (367)
T ss_pred CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhc
Confidence 7899999975 4689999999999999999999999876544 44568999999999999999999875332
Q ss_pred C-C---CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCC----CC-CCCc
Q 020296 215 D-D---NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLP----SP-SDDA 284 (328)
Q Consensus 215 ~-~---~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~----~~-~~~~ 284 (328)
. + ..+++|||++|+.+|++|.+||++|++++| +|++++++++++++|.|..|+++. .|.+... .. ..+.
T Consensus 242 ~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd-~i~e~~e~l~~~l~~~~~ 320 (367)
T PLN03115 242 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT-RMAEYAEELWELLKKDNT 320 (367)
T ss_pred cccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh-HHHHHHHHHHhhcccCCe
Confidence 1 1 357999999999999999999999999998 699999999998889999999975 4432211 11 2357
Q ss_pred EEEEECChhhHHhhh
Q 020296 285 LILVCGPPGMMKHVS 299 (328)
Q Consensus 285 ~v~vCGP~~m~~~v~ 299 (328)
.||+|||++|++.+.
T Consensus 321 ~vYiCGp~~M~~~V~ 335 (367)
T PLN03115 321 YVYMCGLKGMEKGID 335 (367)
T ss_pred EEEEeCCHHHHHHHH
Confidence 999999999999886
No 46
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=5.8e-35 Score=255.57 Aligned_cols=204 Identities=24% Similarity=0.389 Sum_probs=166.6
Q ss_pred EEEEEecCCeeEEEEEcCCCCC-CCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc-cch
Q 020296 84 QDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK-MSQ 161 (328)
Q Consensus 84 ~~~~~~s~~~~~~~~~~p~~~~-~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~-~S~ 161 (328)
++++.+++++++++|+.+.... ..|+||||+.++++.. ..|+|||++.+.+.+.++|+||.+++|. +|.
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---------~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~ 71 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---------LVRQYSLCGDPADRDRYRIAVLREPASRGGSR 71 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---------CceeeeccCCCCCCCEEEEEEEeccCCCchHH
Confidence 3678999999999999886332 4899999999997642 5799999999877799999999998765 899
Q ss_pred hhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296 162 HFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240 (328)
Q Consensus 162 ~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~ 240 (328)
||+ .+++||+|.+.||+|.|.+.++ .++++||||||||||++++++++.+.. .+++|+|++|+.+++++.++|++
T Consensus 72 ~l~~~~~~Gd~v~i~gP~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~ 147 (211)
T cd06185 72 YMHELLRVGDELEVSAPRNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAFLDELAA 147 (211)
T ss_pred HHHhcCCCCCEEEEcCCccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhHHHHHhh
Confidence 997 6899999999999999988654 579999999999999999999987642 58999999999999999999999
Q ss_pred HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 241 l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
+. .+++++.+ +... ++.. +.+.+....++..||+|||+.|+++++ ..|+++|+
T Consensus 148 ~~--~~~~~~~~--~~~~-------~~~~---~~~~~~~~~~~~~vyicGp~~m~~~~~-------------~~l~~~gv 200 (211)
T cd06185 148 LP--GDRVHLHF--DDEG-------GRLD---LAALLAAPPAGTHVYVCGPEGMMDAVR-------------AAAAALGW 200 (211)
T ss_pred hc--CCcEEEEE--CCCC-------CccC---HHHHhccCCCCCEEEEECCHHHHHHHH-------------HHHHHcCC
Confidence 87 34566543 3221 2222 222222222357999999999999998 99999999
Q ss_pred CCCCeEe
Q 020296 321 TEQMVYK 327 (328)
Q Consensus 321 ~~~~I~~ 327 (328)
++++||.
T Consensus 201 ~~~~i~~ 207 (211)
T cd06185 201 PEARLHF 207 (211)
T ss_pred ChhheEe
Confidence 9999984
No 47
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.3e-34 Score=264.85 Aligned_cols=203 Identities=22% Similarity=0.334 Sum_probs=166.1
Q ss_pred CCCeEEEEEEEEEEec----CCeeEEEEEcCCC-----CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296 75 PDKWIGFKLQDTARVS----HNSHLFRFSFDPS-----AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG 145 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s----~~~~~~~~~~p~~-----~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~ 145 (328)
...+.+++|++++.++ +++..|+|++++. ....|.||||+.+..+ +....|+|||+|.+. ++
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~--------g~~~~R~YSias~p~-~g 112 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP--------GSDVPRFYSLASSSS-DG 112 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecC--------CCCCCceEecCCCCC-CC
Confidence 3467789999999999 6999999998752 2577999999999743 334679999999984 58
Q ss_pred eEEEEEEEeCCCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296 146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY 224 (328)
Q Consensus 146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~ 224 (328)
.++|+||.+++|.+|+||+++++||+|.+.+ |.|.|.++ ...++++|||||||||||++|+++.. ..++++|+|
T Consensus 113 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~----~~~~v~L~~ 187 (289)
T cd06201 113 FLEICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA----ARRPMHLYW 187 (289)
T ss_pred eEEEEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh----ccCCEEEEE
Confidence 9999999999999999999999999999985 78888875 34679999999999999999999863 236899999
Q ss_pred eeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH------HhhcCCCCCCCcEEEEECChhhHHh
Q 020296 225 GNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPGMMKH 297 (328)
Q Consensus 225 ~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~------l~~~~~~~~~~~~v~vCGP~~m~~~ 297 (328)
++|+.+ |++|.+||++|++++++++++.+++++. ..|+++..+ +...+. ++..||+|||++|+++
T Consensus 188 g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~---~~~~vyiCGp~~M~~~ 259 (289)
T cd06201 188 GGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIE---DGAQIMVCGSRAMAQG 259 (289)
T ss_pred EecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHH---CCcEEEEECCHHHHHH
Confidence 999985 8999999999999988888888877643 235555322 112222 3578999999999999
Q ss_pred hh
Q 020296 298 VS 299 (328)
Q Consensus 298 v~ 299 (328)
+.
T Consensus 260 v~ 261 (289)
T cd06201 260 VA 261 (289)
T ss_pred HH
Confidence 97
No 48
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=1.2e-34 Score=259.47 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=170.8
Q ss_pred EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296 83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~ 162 (328)
|++++.+++++.+|+|+.+. ....|.||||+.++++.. .+....|+||+++.+.+++.++|+||.+ |.+|+|
T Consensus 1 V~~~~~~t~~v~~l~l~~~~-~~~~~~pGQ~v~l~~~~~-----~~~~~~R~ySi~s~~~~~~~l~l~v~~~--G~~s~~ 72 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPE-IAAAAKPGQFVMLRVPDG-----SDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRL 72 (246)
T ss_pred CcceeEecCCeEEEEEeCcc-hhccCCCCcEEEEEeCCC-----CCCcCCCceEeeeccCCCCEEEEEEEEE--CcchHH
Confidence 56889999999999999874 357899999999999763 2345789999999887679999999998 889999
Q ss_pred hhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296 163 FASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241 (328)
Q Consensus 163 L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l 241 (328)
|+++++||+|.|.||+|+ |.++ +..++++||||||||||+++|++++... ..+++|+|++|+.+|+++.+||++|
T Consensus 73 l~~l~~Gd~v~i~gP~G~~~~~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~---~~~v~l~~~~r~~~d~~~~~eL~~l 148 (246)
T cd06218 73 LSELKAGDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLLFLAKQLAER---GIKVTVLLGFRSADDLFLVEEFEAL 148 (246)
T ss_pred HhcCCCCCEEEEEecCCCCcCCC-CCCCcEEEEecccCHHHHHHHHHHHHhc---CCceEEEEEccchhhhhhHHHHHhh
Confidence 999999999999999997 5554 3568999999999999999999999873 2689999999999999999999998
Q ss_pred HHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296 242 AASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT 321 (328)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~ 321 (328)
.. ++.++ + ...|.+..|++++ .+.+..... .+..||+|||++|+++++ ..|++.|++
T Consensus 149 ~~-----~~~~~-~--~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyiCGp~~mv~~~~-------------~~L~~~Gv~ 205 (246)
T cd06218 149 GA-----EVYVA-T--DDGSAGTKGFVTD-LLKELLAEA-RPDVVYACGPEPMLKAVA-------------ELAAERGVP 205 (246)
T ss_pred CC-----cEEEE-c--CCCCCCcceehHH-HHHHHhhcc-CCCEEEEECCHHHHHHHH-------------HHHHhcCCC
Confidence 53 23332 2 2346677888884 566555443 358999999999999998 999999998
Q ss_pred C
Q 020296 322 E 322 (328)
Q Consensus 322 ~ 322 (328)
.
T Consensus 206 ~ 206 (246)
T cd06218 206 C 206 (246)
T ss_pred E
Confidence 4
No 49
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-34 Score=263.54 Aligned_cols=204 Identities=21% Similarity=0.335 Sum_probs=169.7
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|+++++++++++.++|+.|. ....++||||+.++++.. + ..|||||++.+.+++.++|+||.. |.+|
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~-~~~~~~pGQfv~l~~~~~------~--~~rpySias~~~~~~~i~l~vk~~--G~~T 70 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPR-VAKKAKPGQFVIVRIDEK------G--ERIPLTIADYDREKGTITIVFQAV--GKST 70 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCch-hhccCCCCeEEEEEeCCC------C--CceeeEeeEEcCCCCEEEEEEEeC--CcHH
Confidence 5799999999999999998774 235689999999998643 2 368999999877778999999997 9999
Q ss_pred hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
++|+++++||+| .|.||+|++...+ ..++++|||||+||||++++++++.+++ .+++++|++|+.+|+++.+||+
T Consensus 71 ~~L~~l~~Gd~v~~i~GP~G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~~~el~ 146 (281)
T PRK06222 71 RKLAELKEGDSILDVVGPLGKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLILEDEMK 146 (281)
T ss_pred HHHhcCCCCCEEeeEEcCCCCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhcHHHHH
Confidence 999999999999 7999999965443 3579999999999999999999988653 4799999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
++..+ +++. + ++.|.+..|++++ .+++.+++......||+|||++|++++. +.|++.|
T Consensus 147 ~~~~~-----~~v~-~--~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~-------------~~l~~~g 204 (281)
T PRK06222 147 AVSDE-----LYVT-T--DDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMMKFVA-------------ELTKPYG 204 (281)
T ss_pred hhCCe-----EEEE-c--CCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHHHHHH-------------HHHHhcC
Confidence 88642 2222 2 3457788899984 6666655443246899999999999998 8999999
Q ss_pred CC
Q 020296 320 YT 321 (328)
Q Consensus 320 ~~ 321 (328)
++
T Consensus 205 v~ 206 (281)
T PRK06222 205 IK 206 (281)
T ss_pred CC
Confidence 85
No 50
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=1.7e-34 Score=258.79 Aligned_cols=204 Identities=22% Similarity=0.372 Sum_probs=168.6
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++++++++..|+|+.++ ....++||||+.++++.. + ..|||||++.+.+.+.++|+||.. |.+|
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~-~~~~~~pGQf~~l~~~~~------~--~~~pySi~s~~~~~~~~~~~vk~~--G~~t 69 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPL-IAKKAKPGQFVIVRADEK------G--ERIPLTIADWDPEKGTITIVVQVV--GKST 69 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChh-hhccCCCCcEEEEEcCCC------C--CccceEeEEEcCCCCEEEEEEEeC--CchH
Confidence 4789999999999999999874 235789999999997543 2 468999999887779999999987 8899
Q ss_pred hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
.+|.++++||++ .++||+|.+.+.+ ..++++|||||+||||+++|++++.+.. .+++|+|++|+.+|+++.+||+
T Consensus 70 ~~l~~l~~G~~v~~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~~~el~ 145 (248)
T cd06219 70 RELATLEEGDKIHDVVGPLGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVILEDEFR 145 (248)
T ss_pred HHHHhcCCCCEeeeeecCCCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHH
Confidence 999999999999 6999999976654 3679999999999999999999988653 5899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
+|+++ +++. + ++.|.+..|++++ .+.+.++.......||+|||++|++++. +.|++.|
T Consensus 146 ~l~~~-----~~~~-~--~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGP~~m~~~~~-------------~~l~~~G 203 (248)
T cd06219 146 AVSDE-----LIIT-T--DDGSYGEKGFVTD-PLKELIESGEKVDLVIAIGPPIMMKAVS-------------ELTRPYG 203 (248)
T ss_pred hhcCe-----EEEE-e--CCCCCCccccchH-HHHHHHhccCCccEEEEECCHHHHHHHH-------------HHHHHcC
Confidence 99753 2222 2 2346677788874 5555553333346899999999999998 8899999
Q ss_pred CC
Q 020296 320 YT 321 (328)
Q Consensus 320 ~~ 321 (328)
++
T Consensus 204 v~ 205 (248)
T cd06219 204 IP 205 (248)
T ss_pred CC
Confidence 87
No 51
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=2.8e-34 Score=256.81 Aligned_cols=207 Identities=21% Similarity=0.293 Sum_probs=168.0
Q ss_pred EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296 83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~ 162 (328)
|++++.+++++++|+|+.|.. ...++||||+.++++.. +....|||||++.+.+.++++|+||.. |.+|+|
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~------~~~~~rpySi~s~~~~~~~l~l~i~~~--G~~t~~ 71 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA-ARLFRPGQFVFLRNFES------PGLERIPLSLAGVDPEEGTISLLVEIR--GPKTKL 71 (243)
T ss_pred CceEEEecCCEEEEEEEccch-hhcCCCCCeEEEecCCC------CCceeeeeEeeecCCCCCEEEEEEEEc--CchHHH
Confidence 468899999999999998743 46799999999998653 344789999999987789999999986 889999
Q ss_pred hhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHH
Q 020296 163 FASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILA 242 (328)
Q Consensus 163 L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~ 242 (328)
|+++++||+|.|+||+|++...++..++++||||||||||+++|++++.++. .+++|+|++|+.+|+++.+||+++.
T Consensus 72 l~~~~~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~ 148 (243)
T cd06192 72 IAELKPGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFLDEYFELPA 148 (243)
T ss_pred HHhCCCCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHHHHHHHhhc
Confidence 9999999999999999987665544689999999999999999999998752 6899999999999999999998872
Q ss_pred HhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296 243 ASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322 (328)
Q Consensus 243 ~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~ 322 (328)
..++++ + +++|.+..|++... . ...+.. ....||+|||++|+++++ +.|++.| +.
T Consensus 149 -----~~~~~~-~--~~~~~~~~g~v~~~-~-~~~~~~-~~~~v~icGp~~mv~~~~-------------~~l~~~g-~~ 203 (243)
T cd06192 149 -----DVEIWT-T--DDGELGLEGKVTDS-D-KPIPLE-DVDRIIVAGSDIMMKAVV-------------EALDEWL-QL 203 (243)
T ss_pred -----CeEEEE-e--cCCCCccceeechh-h-hhhhcc-cCCEEEEECCHHHHHHHH-------------HHHHhhc-CC
Confidence 122232 3 24567777888643 1 222222 246899999999999998 8899988 55
Q ss_pred CCeE
Q 020296 323 QMVY 326 (328)
Q Consensus 323 ~~I~ 326 (328)
.+++
T Consensus 204 ~~~~ 207 (243)
T cd06192 204 IKAS 207 (243)
T ss_pred ceEE
Confidence 5554
No 52
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=258.78 Aligned_cols=217 Identities=20% Similarity=0.317 Sum_probs=182.9
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
.-+.++|+..++.++++..++..+.. ...+++||+.+++++.. +...-.|||||+++... .+++|.||.-
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~--~~~~qaGQFAfLk~~~~-----~~~~~~HPFTIa~s~~~-sel~FsIK~L-- 283 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQG--PWLYQAGQFAFLKIEIE-----EFRMRPHPFTIACSHEG-SELRFSIKAL-- 283 (438)
T ss_pred cccceEEechhhcCcchheeecccCC--cccccCCceEEEEeccc-----cccCCCCCeeeeeCCCC-ceEEEEehhh--
Confidence 34468999999999998888888774 23389999999999876 45567899999998754 5899999998
Q ss_pred Cccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296 157 GKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK 235 (328)
Q Consensus 157 G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~ 235 (328)
|++|+.|+ ++++|++++|+||||+|.++.. ..+.|+||||+||||++++++.+... ++..+|+|+|++|+.++.+|.
T Consensus 284 GD~Tk~l~dnLk~G~k~~vdGPYG~F~~~~g-~~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y~ 361 (438)
T COG4097 284 GDFTKTLKDNLKVGTKLEVDGPYGKFDFERG-LNTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALYA 361 (438)
T ss_pred hhhhHHHHHhccCCceEEEecCcceeecccC-CcccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHHH
Confidence 99999999 6999999999999999998764 34489999999999999999999874 455899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
+||++++++.|++.+|.. +. +..|+++.+.+++. ++......||+|||++|+++++ ..|
T Consensus 362 ~eLr~~~qkl~~~~lHii-DS------s~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~dsL~-------------r~l 420 (438)
T COG4097 362 EELRALAQKLPNVVLHII-DS------SKDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMDSLR-------------RDL 420 (438)
T ss_pred HHHHHHHhcCCCeEEEEe-cC------CCCCccCHHHhhcc-ccccCcceEEEEcCHHHHHHHH-------------HHH
Confidence 999999999999988873 22 24588888888776 3333335899999999999998 899
Q ss_pred hhcCCCCCCeE
Q 020296 316 KDLGYTEQMVY 326 (328)
Q Consensus 316 ~~~G~~~~~I~ 326 (328)
+..+++-.++|
T Consensus 421 ~~~~~~i~~~h 431 (438)
T COG4097 421 KKQNVPITNFH 431 (438)
T ss_pred HHcCCCHHHHH
Confidence 99988875544
No 53
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=5.3e-34 Score=257.92 Aligned_cols=195 Identities=20% Similarity=0.248 Sum_probs=160.5
Q ss_pred CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeCC---------Cccc
Q 020296 91 HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYPE---------GKMS 160 (328)
Q Consensus 91 ~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~---------G~~S 160 (328)
+++..++|+.+.+....|.||||+.+.++. ....|+|||+|.|++ .+.++|+||..++ |.+|
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--------~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S 86 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--------PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCS 86 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCC--------CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchh
Confidence 468889999875356789999999998753 236799999999864 6899999999865 9999
Q ss_pred hhhhcCCCCCEEEEEceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhH
Q 020296 161 QHFASLKPGDVVEVKGPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLK 235 (328)
Q Consensus 161 ~~L~~l~~Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~ 235 (328)
.+|+++++||.|.+.||+| .|.++.+..+++|||||||||||+++|+++++.. .....+++|+|++|+. +|+++.
T Consensus 87 ~~L~~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~ 166 (267)
T cd06182 87 NFLAGLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR 166 (267)
T ss_pred HHHhhCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence 9999999999999999999 8998776678999999999999999999999862 2344789999999999 999999
Q ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH------HhhcCCCCCCCcEEEEECChh-hHHhhh
Q 020296 236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPG-MMKHVS 299 (328)
Q Consensus 236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~------l~~~~~~~~~~~~v~vCGP~~-m~~~v~ 299 (328)
++|++|+++++++++++++++++.. ..|+++..+ +.+.+. ++..||+|||+. |++++.
T Consensus 167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~---~~~~vyvCGp~~~m~~~v~ 231 (267)
T cd06182 167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN---EGAHIYVCGDAKSMAKDVE 231 (267)
T ss_pred HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh---cCCEEEEECCcccchHHHH
Confidence 9999999987789999998875432 245665322 111222 245899999999 999997
No 54
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.6e-33 Score=268.69 Aligned_cols=219 Identities=19% Similarity=0.277 Sum_probs=166.6
Q ss_pred cCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCC--
Q 020296 72 ALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAK-- 144 (328)
Q Consensus 72 ~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~-- 144 (328)
...+..-..++|++++.++ +++++|+|+.+. ....+.||||+.|..+.... .......|+|||+|.+++.
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~-~~~~~~pGQfv~l~~pg~~~--~g~~~~~R~YSIas~~~~~~~ 212 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGS-HPFPVLEGQSIGILPPGTDA--SGKPHYARMYSVASPRNGERP 212 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCC-CcCCccCCcEEEEecCCcCc--CCCcCcceeeeecCCCCccCC
Confidence 3456666779999999995 499999998764 35778999999999764200 0122468999999986421
Q ss_pred --CeEEEEEEEeC--------CCccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhC
Q 020296 145 --GHFDLLIKVYP--------EGKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 213 (328)
Q Consensus 145 --~~l~l~Vk~~~--------~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~ 213 (328)
+.++|+||+++ +|.+|+||+++++||+|.|+||+|+ |.++.....+++|||||||||||++|++++...
T Consensus 213 ~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~ 292 (411)
T TIGR03224 213 GYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR 292 (411)
T ss_pred CCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence 47999999985 5999999999999999999999998 444433357999999999999999999998752
Q ss_pred --CCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----CCCCcEE
Q 020296 214 --PDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----PSDDALI 286 (328)
Q Consensus 214 --~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~~~~~~v 286 (328)
.....+++|+|++|+.+|++|.+||++|.+.+++ +++.+++.+.. .+|++++ .+.+.... ...+..|
T Consensus 293 ~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~--~~~~~sr~~~~---~~g~V~d-~l~~~~~~v~~ll~~~~~~v 366 (411)
T TIGR03224 293 RDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFID--INFAFSRTPEQ---PKRYVQD-AIRERAADVAALLKDPNTYI 366 (411)
T ss_pred hhcCCCCCEEEEEecCccccchHHHHHHHHHhcCce--EEEEeccCCcc---CcccHhh-HHHHhHHHHHHHHhcCCcEE
Confidence 1234789999999999999999999999877654 44566654332 4577774 33322110 1124789
Q ss_pred EEECChhhHHhhh
Q 020296 287 LVCGPPGMMKHVS 299 (328)
Q Consensus 287 ~vCGP~~m~~~v~ 299 (328)
|+|||++|++++.
T Consensus 367 YiCGp~~M~~~v~ 379 (411)
T TIGR03224 367 YICGLKGMEEGVL 379 (411)
T ss_pred EEECCHHHHHHHH
Confidence 9999999988876
No 55
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=2.3e-33 Score=249.26 Aligned_cols=194 Identities=22% Similarity=0.364 Sum_probs=162.3
Q ss_pred EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccch
Q 020296 82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQ 161 (328)
Q Consensus 82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~ 161 (328)
+|+++++++++++.|+|+.+ ..|+||||+.++++.. ..|+||+++.| +.++|+||.. |.+|+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~----~~~~pGQ~v~l~~~~~---------~~~~~Si~s~~---~~l~~~v~~~--G~~s~ 63 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD----FDFKPGQFVMVWVPGV---------DEIPMSLSYID---GPNSITVKKV--GEATS 63 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC----CCCCCCceEEEEeCCC---------CcceeEEecCC---CeEEEEEEec--ChHHH
Confidence 78999999999999999865 3799999999998643 24899999997 7899999987 89999
Q ss_pred hhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296 162 HFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240 (328)
Q Consensus 162 ~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~ 240 (328)
||+++++||+|.+.||+|. |.++ .++++||||||||||+++|++++... ++++|+|++|+.+|+++.+||++
T Consensus 64 ~L~~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~~eL~~ 136 (233)
T cd06220 64 ALHDLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFLDRLRK 136 (233)
T ss_pred HHHhcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhHHHHhh
Confidence 9999999999999999998 6554 57999999999999999999999865 58999999999999999999987
Q ss_pred HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 241 l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
+ .++ .++.. +.|.+..|++++ .+++... .....||+|||++|++++. +.|++.|+
T Consensus 137 ~----~~~--~~~~~---~~~~~~~g~~~~-~l~~~~~--~~~~~vyicGp~~m~~~~~-------------~~L~~~g~ 191 (233)
T cd06220 137 S----DEL--IVTTD---DGSYGFKGFVTD-LLKELDL--EEYDAIYVCGPEIMMYKVL-------------EILDERGV 191 (233)
T ss_pred C----CcE--EEEEe---CCCCcccceehH-HHhhhcc--cCCCEEEEECCHHHHHHHH-------------HHHHhcCC
Confidence 2 222 22222 246667888874 5555442 2346899999999999998 99999999
Q ss_pred CCCCeE
Q 020296 321 TEQMVY 326 (328)
Q Consensus 321 ~~~~I~ 326 (328)
+.||+
T Consensus 192 -~~~i~ 196 (233)
T cd06220 192 -RAQFS 196 (233)
T ss_pred -cEEEE
Confidence 67775
No 56
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=3.8e-33 Score=250.40 Aligned_cols=202 Identities=19% Similarity=0.363 Sum_probs=168.6
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
+|+.++|++++++++++..++|+.+ ....+.||||+.++++.. +....||||+++.+ .+.++|.||..
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~--~~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~--~~~l~l~Vk~~-- 70 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGE--KVFDMKPGQFVMVWVPGV------EPLLERPISISDID--KNEITILYRKV-- 70 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCc--cccCCCCCcEEEEEeCCC------CCcCceeeEEeeeC--CCEEEEEEEEc--
Confidence 5778999999999999999999955 357899999999998754 44578999999987 58999999986
Q ss_pred CccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296 157 GKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK 235 (328)
Q Consensus 157 G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~ 235 (328)
|.+|++|+++++||+|.|.||+|. |.++. ..++++||||||||||++++++++...+ .+++|+|++|+.+|+++.
T Consensus 71 G~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~ 146 (250)
T PRK00054 71 GEGTKKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIFE 146 (250)
T ss_pred ChHHHHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhhH
Confidence 899999999999999999999997 76653 5689999999999999999999998653 579999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296 236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL 315 (328)
Q Consensus 236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L 315 (328)
+||+++++ + ++. . ++.|.+..|++++ .+.+.. .....||+|||++|++++. +.|
T Consensus 147 ~el~~~~~----~--~~~-~--~~~~~~~~g~v~~-~l~~~~---~~~~~vyvCGp~~m~~~v~-------------~~l 200 (250)
T PRK00054 147 EEFAKVGD----V--YVT-T--DDGSYGFKGFVTD-VLDELD---SEYDAIYSCGPEIMMKKVV-------------EIL 200 (250)
T ss_pred HHHHhcCC----E--EEE-e--cCCCCCcccchhH-hHhhhc---cCCCEEEEeCCHHHHHHHH-------------HHH
Confidence 99998532 2 222 2 3456677888884 444433 2246899999999999998 899
Q ss_pred hhcCC
Q 020296 316 KDLGY 320 (328)
Q Consensus 316 ~~~G~ 320 (328)
.+.|+
T Consensus 201 ~~~Gv 205 (250)
T PRK00054 201 KEKKV 205 (250)
T ss_pred HHcCC
Confidence 99998
No 57
>PRK05802 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-33 Score=256.19 Aligned_cols=204 Identities=16% Similarity=0.205 Sum_probs=159.4
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~ 153 (328)
+....+++|++++.++++++.++|+.|.. ....++||||++++++.. +....|||||++.+.+.+.++|+||.
T Consensus 61 ~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~------~~~~~rP~SI~~~~~~~g~l~l~ik~ 134 (320)
T PRK05802 61 GRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNS------SSFFDVPISIMEADTEENIIKVAIEI 134 (320)
T ss_pred ccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCC------CCEeEEeeEecccCCCCCEEEEEEEe
Confidence 34566899999999999999999998852 224579999999998753 44567999999998778999999999
Q ss_pred eCCCccchhhhcCCCCCEEEEEceeec--cccC---CCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296 154 YPEGKMSQHFASLKPGDVVEVKGPIEK--LRYS---PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS 228 (328)
Q Consensus 154 ~~~G~~S~~L~~l~~Gd~v~v~GP~G~--~~~~---~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~ 228 (328)
. |.+|++|+++++||+|.|+||+|+ |.+. ....++++|||||+||||++++++++++++ .+|+|+|++|+
T Consensus 135 ~--G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~r~ 209 (320)
T PRK05802 135 R--GVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDKGP 209 (320)
T ss_pred c--ChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 6 999999999999999999999964 5543 234568999999999999999999998764 47999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296 229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
.+|+++.++|+++..+. .+..++++...++ +.+|.++ +.+++. +...||+|||+.|++++.
T Consensus 210 ~~~~~~~~el~~~~~~~---~~~~~~ddG~~~~-~~~g~v~-----~~l~~~-~~~~vy~CGP~~M~k~v~ 270 (320)
T PRK05802 210 FKNNFIKEYLELYNIEI---IELNLLDDGELSE-EGKDILK-----EIIKKE-DINLIHCGGSDILHYKII 270 (320)
T ss_pred HHHHHHHHHHHHhhCce---EEEEecccCCCCc-cccchHH-----HHhcCC-CCCEEEEECCHHHHHHHH
Confidence 99999999999987542 2221122211111 1234444 333322 236899999999999998
No 58
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=100.00 E-value=4.2e-33 Score=245.34 Aligned_cols=183 Identities=21% Similarity=0.304 Sum_probs=145.9
Q ss_pred EEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCC----------CCccccccccCCcCCCCC---CeEEEE
Q 020296 85 DTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEG----------NTKYVVRPYTPISDTEAK---GHFDLL 150 (328)
Q Consensus 85 ~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~----------~~~~~~RpYTi~s~~~~~---~~l~l~ 150 (328)
+++.+++++++|+|+++. .....|.||||+.++++....... .+....|+|||+|.|.+. +.++|.
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 568899999999999986 445899999999999864210000 022467999999998654 799999
Q ss_pred EEEeCCCccchhhhcCC--C---CCEEEEEceeeccccCC---CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEE
Q 020296 151 IKVYPEGKMSQHFASLK--P---GDVVEVKGPIEKLRYSP---NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSL 222 (328)
Q Consensus 151 Vk~~~~G~~S~~L~~l~--~---Gd~v~v~GP~G~~~~~~---~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L 222 (328)
||.. |.+|++|+++. . |++|.+.||+|.|.++. +..++++||||||||||+++|++++++..+...+|+|
T Consensus 82 vk~~--G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l 159 (220)
T cd06197 82 VRKK--GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITL 159 (220)
T ss_pred EEeC--CCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEE
Confidence 9998 99999999653 3 99999999999998875 3468999999999999999999999876444578999
Q ss_pred EEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296 223 LYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 223 ~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
+|++|+.+|+++.+||.++.. . .+.+..+.+ ..||+|||++|++++.
T Consensus 160 ~~~~r~~~~~~~~~el~~~~~-~-~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~ 206 (220)
T cd06197 160 LWSLREDDLPLVMDTLVRFPG-L-PVSTTLFIT----------------------------SEVYLCGPPALEKAVL 206 (220)
T ss_pred EEEecchhhHHHHHHHHhccC-C-ceEEEEEEe----------------------------ccEEEECcHHHHHHHH
Confidence 999999999999999977643 1 122221111 1799999999999997
No 59
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=100.00 E-value=6.5e-33 Score=246.70 Aligned_cols=214 Identities=16% Similarity=0.205 Sum_probs=165.5
Q ss_pred EEEEEEecCCeeEEEEEcCCCC-CCCcccceEEEEEecCCCC-------------CCCCCccccccccCCcCCCCCCeEE
Q 020296 83 LQDTARVSHNSHLFRFSFDPSA-KLGLDVASCILTRAPLGQD-------------AEGNTKYVVRPYTPISDTEAKGHFD 148 (328)
Q Consensus 83 v~~~~~~s~~~~~~~~~~p~~~-~~~~~~Gq~v~l~~~~~~~-------------~~~~~~~~~RpYTi~s~~~~~~~l~ 148 (328)
|++++++++++++|+|+.+... ...+.||||+.+.++.... ..+.+....|+||+++.+.+.++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 5789999999999999988622 3678999999999875410 0001346789999999887789999
Q ss_pred EEEEEeCC-CccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeC
Q 020296 149 LLIKVYPE-GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNI 227 (328)
Q Consensus 149 l~Vk~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r 227 (328)
|.|+.+++ |.+|+||+++++||+|.+.||+|.|.+.+ ..++++||||||||||+++|++++... .+++++|+++
T Consensus 81 ~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~~ 155 (235)
T cd06193 81 IDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEVP 155 (235)
T ss_pred EEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEEC
Confidence 99999887 99999999999999999999999988765 457999999999999999999987643 6899999999
Q ss_pred CCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296 228 SPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307 (328)
Q Consensus 228 ~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~ 307 (328)
+.+|++..++ .++++++++.+.+... +..+. ..+. .......+..+|+|||++|+++++
T Consensus 156 ~~~d~~~l~~-------~~~~~~~~~~~~~~~~--~~~~~---~~~~-~~~~~~~~~~vyicGp~~mv~~v~-------- 214 (235)
T cd06193 156 DAADEQPLPA-------PAGVEVTWLHRGGAEA--GELAL---LAVR-ALAPPAGDGYVWIAGEAGAVRALR-------- 214 (235)
T ss_pred CHHHccccCC-------CCCcEEEEEeCCCCCc--chhHH---HHHh-cccCCCCCeEEEEEccHHHHHHHH--------
Confidence 9877543222 2357777776543321 11121 1122 233333457999999999999998
Q ss_pred cchHHHHHhh-cCCCCCCeEe
Q 020296 308 QGELSGILKD-LGYTEQMVYK 327 (328)
Q Consensus 308 qg~~~~~L~~-~G~~~~~I~~ 327 (328)
..|.+ .|+++++||.
T Consensus 215 -----~~l~~~~g~~~~~i~~ 230 (235)
T cd06193 215 -----RHLREERGVPRAQVYA 230 (235)
T ss_pred -----HHHHHccCCCHHHEEE
Confidence 78865 6999999985
No 60
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=100.00 E-value=6e-33 Score=241.09 Aligned_cols=243 Identities=26% Similarity=0.449 Sum_probs=208.2
Q ss_pred CCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCC------------CC----------
Q 020296 69 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDA------------EG---------- 126 (328)
Q Consensus 69 ~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~------------~~---------- 126 (328)
++..++-++| +++|++......-++.+.+.+|++....|++|-|+.+..|.-... ||
T Consensus 126 pEe~fgvkkW-ectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs 204 (410)
T COG2871 126 PEEVFGVKKW-ECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVS 204 (410)
T ss_pred hHHhcCccce-eEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeec
Confidence 4557778888 689999998888889999999997788999999999987632100 11
Q ss_pred -CCccccccccCCcCCCCCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEec
Q 020296 127 -NTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAG 196 (328)
Q Consensus 127 -~~~~~~RpYTi~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAg 196 (328)
......|.||.+|.|.+.+.+.|-||.. |-|.+|+|+.+|++||.|.|.||+|.|..+. ...++|||+|
T Consensus 205 ~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd-tdaemvFigG 283 (410)
T COG2871 205 KVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGG 283 (410)
T ss_pred cccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc-CCCceEEEec
Confidence 2345789999999999999999999964 4688999999999999999999999987765 4689999999
Q ss_pred CccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHh
Q 020296 197 GTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTAL 274 (328)
Q Consensus 197 GtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~ 274 (328)
|.|.+||++-+-..+.+-..++++.+.|++|+..+.+|.+++++|+.++|||+.|..++++ .++|++..|++...+.+
T Consensus 284 GAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~e 363 (410)
T COG2871 284 GAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYE 363 (410)
T ss_pred CcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHh
Confidence 9999999999988887767789999999999999999999999999999999999999986 46899999999876665
Q ss_pred hcCCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296 275 KGLPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY 326 (328)
Q Consensus 275 ~~~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~ 326 (328)
..+.+. .++..+|+||||-|..++- ..|+++|+.+++|.
T Consensus 364 n~Lk~h~aPEDceyYmCGPp~mNasvi-------------kmL~dlGVE~enIl 404 (410)
T COG2871 364 NYLKDHEAPEDCEYYMCGPPLMNASVI-------------KMLKDLGVERENIL 404 (410)
T ss_pred hhhhcCCCchheeEEeeCcchhhHHHH-------------HHHHhcCcccccee
Confidence 544322 2579999999999999985 99999999999985
No 61
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=6.5e-32 Score=241.62 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=150.8
Q ss_pred CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC-----Cccchhhhc-
Q 020296 92 NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE-----GKMSQHFAS- 165 (328)
Q Consensus 92 ~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~-----G~~S~~L~~- 165 (328)
++.+|+|+.++ ....|.||||+.+.++. ....|+|||+|.|. .+.++|+||..++ |.+|.||++
T Consensus 17 ~v~~l~l~~~~-~~~~f~pGQ~v~l~~~~--------~~~~R~YSIas~p~-~~~l~l~Vk~~~~~~~~~G~~S~~L~~~ 86 (245)
T cd06200 17 PLWRLRLTPPD-AGAQWQAGDIAEIGPRH--------PLPHREYSIASLPA-DGALELLVRQVRHADGGLGLGSGWLTRH 86 (245)
T ss_pred ceEEEEEecCC-CCCCccCCcEEEecCCC--------CCCCcceEeccCCC-CCEEEEEEEEeccCCCCCeeechhhhhC
Confidence 37788888763 45789999999998642 23679999999986 5899999999877 789999985
Q ss_pred CCCCCEEEEEceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHH
Q 020296 166 LKPGDVVEVKGPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAA 243 (328)
Q Consensus 166 l~~Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~ 243 (328)
+++||+|.+.||.| .|.++. ..++++|||||||||||++|++++...+ ..+++|+|++|+. +|++|.+||++|++
T Consensus 87 ~~~Gd~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~~~d~~~~~el~~~~~ 163 (245)
T cd06200 87 APIGASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQAAHDFFCREELEAWQA 163 (245)
T ss_pred CCCCCEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCccccHhHHHHHHHHHH
Confidence 68999999999865 676654 4579999999999999999999998753 2579999999998 48999999999999
Q ss_pred hCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCC----CCCcEEEEECCh-hhHHhhh
Q 020296 244 SHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSP----SDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 244 ~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~----~~~~~v~vCGP~-~m~~~v~ 299 (328)
+++++++++++++++. ..++++. .+.+..+.. ..+..||+|||+ +|++++.
T Consensus 164 ~~~~~~~~~~~s~~~~----~~~~v~~-~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~ 219 (245)
T cd06200 164 AGHLARLDLAFSRDQA----QKRYVQD-RLRAAADELRAWVAEGAAIYVCGSLQGMAPGVD 219 (245)
T ss_pred CCCcceEEEEEccCCC----CCcchHH-HHHHhHHHHHHHHHCCcEEEEECCchhhhHHHH
Confidence 9888888888776432 2456653 333221110 124789999999 9999997
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.3e-30 Score=267.15 Aligned_cols=204 Identities=20% Similarity=0.274 Sum_probs=171.2
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++.++++++.|+|+.|. ....++||||++|+++.. + ..|||||++.+.+.+.++|+||.. |.+|
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~-~~~~~~pGQFv~l~~~~~------~--~~rp~Si~~~~~~~g~i~~~vk~v--G~~T 70 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPL-IAKSRKPGQFVIVRVGEK------G--ERIPLTIADADPEKGTITLVIQEV--GLST 70 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCc-hhccCCCCeeEEEEeCCC------C--CeeEEEeeeeCCCCCEEEEEEEEc--CchH
Confidence 5799999999999999999774 235689999999998643 3 368999999988889999999998 9999
Q ss_pred hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296 161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD 239 (328)
Q Consensus 161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~ 239 (328)
++|+++++||.| .|.||+|++...+ ..++++|||||+||||++++++++.+++ .+++++|++|+.+++++.+||+
T Consensus 71 ~~L~~l~~Gd~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~~~el~ 146 (752)
T PRK12778 71 TKLCELNEGDYITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIILEDEMR 146 (752)
T ss_pred HHHhcCCCCCEeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhhHHHHH
Confidence 999999999999 7999999976654 3479999999999999999999998764 4899999999999999999999
Q ss_pred HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319 (328)
Q Consensus 240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G 319 (328)
+|..+ +++. + +++|.|..|++++ .+++.++...+...||+|||++|++++. ..|++.|
T Consensus 147 ~~~~~-----~~~~-t--~dg~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~-------------~~l~~~g 204 (752)
T PRK12778 147 ESSDE-----VIIM-T--DDGSYGRKGLVTD-GLEEVIKRETKVDKVFAIGPAIMMKFVC-------------LLTKKYG 204 (752)
T ss_pred hhcCe-----EEEE-E--CCCCCCCcccHHH-HHHHHhhcCCCCCEEEEECCHHHHHHHH-------------HHHHHcC
Confidence 98643 2222 2 3467888999984 6666654432346899999999999998 8999999
Q ss_pred CC
Q 020296 320 YT 321 (328)
Q Consensus 320 ~~ 321 (328)
++
T Consensus 205 v~ 206 (752)
T PRK12778 205 IP 206 (752)
T ss_pred CC
Confidence 86
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=2.1e-29 Score=261.02 Aligned_cols=216 Identities=20% Similarity=0.269 Sum_probs=174.6
Q ss_pred CCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296 76 DKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155 (328)
Q Consensus 76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~ 155 (328)
..+.+++|++++.++++++.|+|+.|. ....+.||||+.++.... + ..||||+++.+.+.+.++|+||.+
T Consensus 646 ~~~~~~~I~~~~~lt~dv~~~~l~~p~-~~~~~~PGQFv~L~~~~~------g--e~rP~SIas~~~~~g~i~l~Vk~v- 715 (944)
T PRK12779 646 LGQIPQTIVGKVQLAGGIVEFTVRAPM-VARSAQAGQFVRVLPWEK------G--ELIPLTLADWDAEKGTIDLVVQGM- 715 (944)
T ss_pred ccceEEEEEEEEEecCCEEEEEEeCCC-ccccCCCCceEEEEeCCC------C--CEEeEEccCCCCCCCEEEEEEEee-
Confidence 357899999999999999999999874 235789999999997543 3 358999999887779999999998
Q ss_pred CCccchhhhcCCCCCEEE-EEceeeccc-cCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 156 EGKMSQHFASLKPGDVVE-VKGPIEKLR-YSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 156 ~G~~S~~L~~l~~Gd~v~-v~GP~G~~~-~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
|.+|.+|+++++||.|. |.||+|++. ++. ...++++|||||+||||+++|++++.+.+ .+|+|+|++|+.+++
T Consensus 716 -G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl 791 (944)
T PRK12779 716 -GTSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFL 791 (944)
T ss_pred -ccHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHh
Confidence 88999999999999994 999999864 332 22368999999999999999999988764 579999999999998
Q ss_pred hhHHH---HHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCC---C--CCcEEEEECChhhHHhhhcccc
Q 020296 233 LLKQK---LDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSP---S--DDALILVCGPPGMMKHVSGEKA 303 (328)
Q Consensus 233 ~~~~e---l~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~---~--~~~~v~vCGP~~m~~~v~g~~~ 303 (328)
++.++ |++|++.+++ ++++++. +++|.|..|+++. .+++.+... . ....||+|||++||+++.
T Consensus 792 ~~~del~~L~~la~~~~~~~~v~~tt---ddgs~G~~G~Vt~-~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~---- 863 (944)
T PRK12779 792 FWTGDDERVGKLKAEFGDQLDVIYTT---NDGSFGVKGFVTG-PLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVS---- 863 (944)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEEe---cCCCCCCccccCh-HHHHHHHhcccccccCCcEEEEECCHHHHHHHH----
Confidence 88765 5667788886 6665542 3457788899985 344433221 1 135799999999999998
Q ss_pred cCCCcchHHHHHhhcCCCC
Q 020296 304 KDYSQGELSGILKDLGYTE 322 (328)
Q Consensus 304 ~~~~qg~~~~~L~~~G~~~ 322 (328)
..|++.|++.
T Consensus 864 ---------~~l~~~Gv~~ 873 (944)
T PRK12779 864 ---------DLTKPYGVKT 873 (944)
T ss_pred ---------HHHHHcCCCe
Confidence 8999999986
No 64
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=3.1e-28 Score=212.86 Aligned_cols=178 Identities=18% Similarity=0.283 Sum_probs=140.2
Q ss_pred EEEEec-CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeCCCccchh
Q 020296 85 DTARVS-HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYPEGKMSQH 162 (328)
Q Consensus 85 ~~~~~s-~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~G~~S~~ 162 (328)
.++.++ +++..++|+.+. ...+.||||++++++.. .+....|||||++.+.+ .+.++|+||..+ |..++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~--~~~~~pGq~v~l~~~~~-----~~~~~~hpfsias~~~~~~~~i~~~vk~~~-G~~t~~ 74 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPK--PFKWKPGQHVYLNFPSL-----LSFWQSHPFTIASSPEDEQDTLSLIIRAKK-GFTTRL 74 (210)
T ss_pred EEEEecCCCEEEEEEecCC--CCccCCCCEEEEEeCCC-----CCCcccCCcEeeeCCCCCCCEEEEEEEecC-ChHHHH
Confidence 455566 899999998773 56899999999999753 24568899999999876 689999999874 666766
Q ss_pred hhcCC------CCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCC---CCCeEEEEEeeCCCchh-
Q 020296 163 FASLK------PGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD---DNTQVSLLYGNISPDDI- 232 (328)
Q Consensus 163 L~~l~------~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~---~~~~i~L~~~~r~~~d~- 232 (328)
+..++ .|+++.+.||+|.+..+....++++|||||+||||++++++++....+ ...+|+|+|++|+.+++
T Consensus 75 ~~~~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~ 154 (210)
T cd06186 75 LRKALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLE 154 (210)
T ss_pred HHHHHhCcCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhH
Confidence 66776 899999999999976344567899999999999999999999987632 35789999999999994
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296 233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
++.++|.+..+-....+++.++++ |++|||.+|++.++
T Consensus 155 ~~~~~l~~~~~~~~~~~~~i~~T~-----------------------------v~~CGp~~~~~~~~ 192 (210)
T cd06186 155 WFLDELRAAQELEVDGEIEIYVTR-----------------------------VVVCGPPGLVDDVR 192 (210)
T ss_pred HHHHHHHhhhhccCCceEEEEEee-----------------------------EEEECchhhccHHH
Confidence 788998751111111134444432 99999999999998
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=249.29 Aligned_cols=202 Identities=16% Similarity=0.295 Sum_probs=166.9
Q ss_pred EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296 81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S 160 (328)
++|++++.++++++.++|+.|.. ...++||||+.|+++.. + ..||||+++.+.+.+.++|.||.. |.+|
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~-a~~~~PGQFV~l~~~~~------~--errplSIa~~~~~~g~i~l~vk~v--G~~T 70 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDV-AASAEPGHFVMLRLYEG------A--ERIPLTVADFDRKKGTITMVVQAL--GKTT 70 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCc-ccCCCCCeeEEEEeCCC------C--eeEEEEecCcCCCCCEEEEEEEec--CcHH
Confidence 57999999999999999998852 36789999999998543 3 368999999887789999999997 8999
Q ss_pred hhhh-cCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296 161 QHFA-SLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238 (328)
Q Consensus 161 ~~L~-~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el 238 (328)
+||+ ++++||.| .+.||+|.+.... ..++++|||||+||||+++|++++.+.+ .+++++|+.|+.+++++.+||
T Consensus 71 ~~L~~~lk~Gd~l~~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~~del 146 (1006)
T PRK12775 71 REMMTKFKAGDTFEDFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFWEDKF 146 (1006)
T ss_pred HHHHhcCCCCCEEeeeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHcccHHHH
Confidence 9995 89999999 7999999864333 3578999999999999999999988764 479999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL 318 (328)
Q Consensus 239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~ 318 (328)
.++... + +++ + +++|.|..|+++. .+.+.+... ....||+|||++||+.+. .++++.
T Consensus 147 ~~~~~~---~--~v~-t--ddgs~G~~G~vt~-~l~~~l~~~-~~d~vy~CGP~~Mm~av~-------------~~~~~~ 203 (1006)
T PRK12775 147 GKYCDD---L--IVC-T--DDGSYGKPGFVTA-ALKEVCEKD-KPDLVVAIGPLPMMNACV-------------ETTRPF 203 (1006)
T ss_pred HhhcCc---E--EEE-E--CCCCCCCCCChHH-HHHHHhccC-CCCEEEEECCHHHHHHHH-------------HHHHHC
Confidence 877532 2 222 2 3457788899984 566655442 235799999999999998 899999
Q ss_pred CC
Q 020296 319 GY 320 (328)
Q Consensus 319 G~ 320 (328)
|+
T Consensus 204 gi 205 (1006)
T PRK12775 204 GV 205 (1006)
T ss_pred CC
Confidence 98
No 66
>PLN02292 ferric-chelate reductase
Probab=99.96 E-value=2.4e-27 Score=236.19 Aligned_cols=203 Identities=20% Similarity=0.296 Sum_probs=161.2
Q ss_pred EEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCC
Q 020296 79 IGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEG 157 (328)
Q Consensus 79 ~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G 157 (328)
..+++++++.+++++.+++|+.++ ...+.||||+++.++.. +..++|||||+|.+. +++.++|+||.+ |
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~--~~~~~PGQ~vfL~~P~~------s~~q~HPFTIaSsp~~~~~~l~l~IK~~--G 394 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNP--MLMYSPTSIMFVNIPSI------SKLQWHPFTITSSSKLEPEKLSVMIKSQ--G 394 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCC--CCCcCCCCeEEEEEccC------CccceeeeEeeccCCCCCCEEEEEEEcC--C
Confidence 468899999999999999998764 46799999999999764 556899999999874 568899999986 8
Q ss_pred ccchhhh-cCCCCCE-----EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEeeC
Q 020296 158 KMSQHFA-SLKPGDV-----VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYGNI 227 (328)
Q Consensus 158 ~~S~~L~-~l~~Gd~-----v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r 227 (328)
.+|++|+ .++.||. |.++||||.+..+....++++|||||+||||++++++++.++.++ .++++|+|++|
T Consensus 395 ~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR 474 (702)
T PLN02292 395 KWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFK 474 (702)
T ss_pred chhHHHHHhCCCCCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence 8999998 5788884 579999998754445568999999999999999999999875432 26899999999
Q ss_pred CCchhhhHHHHHH-------HHHhCCCeEEEEEEeCCCCCC-CCcccccCHHHHhhcCCCCC--CCcEEEEECChhh
Q 020296 228 SPDDILLKQKLDI-------LAASHPNLKVFYTVDNPTKNW-KGGVGYISKDTALKGLPSPS--DDALILVCGPPGM 294 (328)
Q Consensus 228 ~~~d~~~~~el~~-------l~~~~~~~~v~~~~~~~~~~~-~g~~g~i~~~~l~~~~~~~~--~~~~v~vCGP~~m 294 (328)
+.+|+.+.+++.. ++++ .+++++.+++++.+.. ++..| +++++++.++.|. ++..+.+|||+.-
T Consensus 475 ~~~Dl~~ld~l~~e~~~~~~l~~~-~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~ 548 (702)
T PLN02292 475 NSSDLSMLDLILPTSGLETELSSF-IDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSW 548 (702)
T ss_pred CHHHhhHHHHHHHhhhhHHHHhhc-CCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCch
Confidence 9999988765443 3333 4566666777654332 33344 7888988877666 7899999999864
No 67
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.94 E-value=8.2e-27 Score=221.45 Aligned_cols=165 Identities=22% Similarity=0.219 Sum_probs=135.0
Q ss_pred ccccccccCCcCCCC-CCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCc
Q 020296 129 KYVVRPYTPISDTEA-KGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGT 198 (328)
Q Consensus 129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGt 198 (328)
....|+|||+|+|.. .+.++|+|+.+ +.|.+|+||+++++||+|.+.+|.|.|.++.+...+++|||+||
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~~plImIa~Gt 240 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPKKPIIMVGPGT 240 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCCCCEEEEcCCc
Confidence 357899999999864 68999999976 56999999999999999999999999998766678999999999
Q ss_pred cHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHh
Q 020296 199 GITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTAL 274 (328)
Q Consensus 199 GItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~ 274 (328)
|||||++++++.... .....+++|+|++|+. +|++|.+||++|++..++++++...++++. ..++++..+.+
T Consensus 241 GIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~yVq~~l~~ 316 (382)
T cd06207 241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVYVQDLIRE 316 (382)
T ss_pred cHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceEhHHHHHH
Confidence 999999999987532 2235789999999998 899999999999998877889888887543 24666632211
Q ss_pred ------hcCCCCCCCcEEEEECChh-hHHhhh
Q 020296 275 ------KGLPSPSDDALILVCGPPG-MMKHVS 299 (328)
Q Consensus 275 ------~~~~~~~~~~~v~vCGP~~-m~~~v~ 299 (328)
+.+.. +...||||||+. |+++++
T Consensus 317 ~~~~~~~~l~~--~~~~vYvCG~~~~M~~~V~ 346 (382)
T cd06207 317 NSDLVYQLLEE--GAGVIYVCGSTWKMPPDVQ 346 (382)
T ss_pred CHHHHHHHHhc--CCCEEEEECCcccccHHHH
Confidence 12221 235899999998 999997
No 68
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.94 E-value=5.2e-27 Score=222.96 Aligned_cols=179 Identities=24% Similarity=0.326 Sum_probs=137.7
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeC----------CCccchhhhcCCCCCEEEE-
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYP----------EGKMSQHFASLKPGDVVEV- 174 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~----------~G~~S~~L~~l~~Gd~v~v- 174 (328)
....||++.+. +. ...|+|||+|+|.. .+.++|.|+... .|.+|+||+++++||+|.+
T Consensus 146 ~~~~~~~l~~~-p~---------l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 215 (384)
T cd06206 146 ALPLATFLAML-PP---------MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVS 215 (384)
T ss_pred CCCHHHHHHhC-cc---------cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEE
Confidence 45678887765 32 26799999999853 577777776542 6899999999999999985
Q ss_pred -EceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeE
Q 020296 175 -KGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLK 249 (328)
Q Consensus 175 -~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~ 249 (328)
++|.|.|.++.+..++++||||||||||++++++++... .....+++|+|++|+. +|++|.+||++|++ .++++
T Consensus 216 i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~~~ 294 (384)
T cd06206 216 VRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGVVS 294 (384)
T ss_pred EecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCCeE
Confidence 589999988776678999999999999999999987532 2234689999999999 89999999999987 46789
Q ss_pred EEEEEeCCCCCCCCcccccCHHHHhh---cCCCCCCCcEEEEECChhhHHhhh
Q 020296 250 VFYTVDNPTKNWKGGVGYISKDTALK---GLPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 250 v~~~~~~~~~~~~g~~g~i~~~~l~~---~~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
++.++++++.. ..++++..+.+. ......++..||||||++|++++.
T Consensus 295 l~~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~ 344 (384)
T cd06206 295 VRRAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVR 344 (384)
T ss_pred EEEEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHH
Confidence 98888875432 246776422111 111012358899999999999997
No 69
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.94 E-value=1.7e-26 Score=220.05 Aligned_cols=169 Identities=21% Similarity=0.316 Sum_probs=137.2
Q ss_pred ccccccccCCcCCCC-CCeEEEEEEEeCC---CccchhhhcCC-----CCCEEEEEc-eeeccccCCC-CCceEEEEecC
Q 020296 129 KYVVRPYTPISDTEA-KGHFDLLIKVYPE---GKMSQHFASLK-----PGDVVEVKG-PIEKLRYSPN-MKKHIGMIAGG 197 (328)
Q Consensus 129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~---G~~S~~L~~l~-----~Gd~v~v~G-P~G~~~~~~~-~~~~ivlIAgG 197 (328)
....|+|||+|+|.. .+.++|+|+.++. |.+|+||++++ +|++|.+.+ |.|.|.++.+ ...+++|||+|
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~G 250 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPG 250 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCC
Confidence 347899999999865 5899999999864 99999999988 999999999 6778988765 46899999999
Q ss_pred ccHHHHHHHHHHHHhC-----CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHH
Q 020296 198 TGITPMLQVIEAILKN-----PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKD 271 (328)
Q Consensus 198 tGItP~~~ll~~l~~~-----~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~ 271 (328)
||||||++++++.... .....+++|||++|+. +|++|.+||++|.+.++.++++.+.++++..| +.+++|+.
T Consensus 251 tGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k~yVqd- 328 (398)
T cd06203 251 TGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STPKYVQD- 328 (398)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCceecch-
Confidence 9999999999987641 2234789999999999 79999999999999887788888888866543 56789984
Q ss_pred HHhhcCCC-----CCCCcEEEEECC-hhhHHhhh
Q 020296 272 TALKGLPS-----PSDDALILVCGP-PGMMKHVS 299 (328)
Q Consensus 272 ~l~~~~~~-----~~~~~~v~vCGP-~~m~~~v~ 299 (328)
.+.+.... ..++..|||||| +.|.++++
T Consensus 329 ~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~ 362 (398)
T cd06203 329 KLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVR 362 (398)
T ss_pred HHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHH
Confidence 44432211 123588999999 57888987
No 70
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.94 E-value=1.5e-26 Score=217.90 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=141.7
Q ss_pred CCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEe--------CCCccchhhhcC-CCCCEEEEE
Q 020296 106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVY--------PEGKMSQHFASL-KPGDVVEVK 175 (328)
Q Consensus 106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~l-~~Gd~v~v~ 175 (328)
..+.+||++.+..+ ...|+|||+|+|.. .+.++|+|+.. +.|.+|+||+++ ++||+|.+.
T Consensus 130 ~~~~~gq~l~l~~~----------~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~ 199 (360)
T cd06199 130 ARLTAEELLDLLRP----------LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVF 199 (360)
T ss_pred CCCCHHHHHHhCcC----------CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEE
Confidence 57789999888632 25799999999864 57899999876 579999999975 699999999
Q ss_pred cee-eccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296 176 GPI-EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 176 GP~-G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
+|. |.|.++.+...+++|||+||||||+++|+++..... ...+++|+|++|+. +|++|.+||++|++.+.+++++..
T Consensus 200 ~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a 278 (360)
T cd06199 200 VQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTA 278 (360)
T ss_pred EecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEE
Confidence 855 579887666789999999999999999999987543 34789999999997 799999999999988877888888
Q ss_pred EeCCCCCCCCcccccCHHHHhhcCCC----CCCCcEEEEECCh-hhHHhhhc
Q 020296 254 VDNPTKNWKGGVGYISKDTALKGLPS----PSDDALILVCGPP-GMMKHVSG 300 (328)
Q Consensus 254 ~~~~~~~~~g~~g~i~~~~l~~~~~~----~~~~~~v~vCGP~-~m~~~v~g 300 (328)
.+++.. ..++++. .+.+.... ..++..||||||+ .|+++++.
T Consensus 279 ~Sr~~~----~~~yVq~-~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~ 325 (360)
T cd06199 279 FSRDQA----EKVYVQD-RMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDA 325 (360)
T ss_pred EccCCC----CCccHHH-HHHHhHHHHHHHHhCCCEEEEECCCccccHHHHH
Confidence 887543 2456653 23221111 1135789999999 89999873
No 71
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.93 E-value=5.1e-25 Score=210.36 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=130.9
Q ss_pred cccccccCCcCCCC-CCeEEEEEEEe-----------CCCccchhhhcCCCCCEEEEEcee-eccccCCCCCceEEEEec
Q 020296 130 YVVRPYTPISDTEA-KGHFDLLIKVY-----------PEGKMSQHFASLKPGDVVEVKGPI-EKLRYSPNMKKHIGMIAG 196 (328)
Q Consensus 130 ~~~RpYTi~s~~~~-~~~l~l~Vk~~-----------~~G~~S~~L~~l~~Gd~v~v~GP~-G~~~~~~~~~~~ivlIAg 196 (328)
...|+|||+|+|.. .+.++|+|+.+ +.|.+|+||+++++||+|.+.++. +.|.++.+...+++|||+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~ 254 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGP 254 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcC
Confidence 47899999999863 57788877653 258999999999999999998754 478887766789999999
Q ss_pred CccHHHHHHHHHHHHhC-------CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296 197 GTGITPMLQVIEAILKN-------PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI 268 (328)
Q Consensus 197 GtGItP~~~ll~~l~~~-------~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i 268 (328)
|||||||++++++.... .....+++|+|++|+. +|.+|.+||+++++....++++.+.++++.. .++||
T Consensus 255 GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~---~k~yV 331 (406)
T cd06202 255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGK---PKTYV 331 (406)
T ss_pred CcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCC---CCeeh
Confidence 99999999999986421 1234789999999999 8999999999999887778888888875432 35788
Q ss_pred CHHHHhhcCCC-----CCCCcEEEEECChhhHHhhh
Q 020296 269 SKDTALKGLPS-----PSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 269 ~~~~l~~~~~~-----~~~~~~v~vCGP~~m~~~v~ 299 (328)
+. .|.+.... ...+..||||||+.|++++.
T Consensus 332 q~-~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~ 366 (406)
T cd06202 332 QD-LLKEQAESVYDALVREGGHIYVCGDVTMAEDVS 366 (406)
T ss_pred hh-HHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHH
Confidence 74 34322111 02358899999999999987
No 72
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.93 E-value=1.7e-25 Score=222.64 Aligned_cols=178 Identities=23% Similarity=0.268 Sum_probs=141.8
Q ss_pred CCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhhc-CCCCCEEEEE
Q 020296 106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFAS-LKPGDVVEVK 175 (328)
Q Consensus 106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~ 175 (328)
..+.+||++.+..+ ...|+|||+|+|. ..+.++|+|+.+ +.|.+|+||++ +++||+|.|.
T Consensus 367 ~~~~~gq~v~ll~~----------~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~ 436 (597)
T TIGR01931 367 ADLDAEQLISLLRP----------LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVY 436 (597)
T ss_pred CCCCHHHHHHhCcc----------cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEE
Confidence 56789999887643 2679999999985 367899999864 57999999996 9999999999
Q ss_pred cee-eccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEE
Q 020296 176 GPI-EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 176 GP~-G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
+|. |.|.++.+...+++|||+|||||||+++++++.... ...+++|+|++|+ .+|++|.+||+++.+.....+++..
T Consensus 437 ~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~a 515 (597)
T TIGR01931 437 IEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLA 515 (597)
T ss_pred EeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEE
Confidence 855 579887766689999999999999999999987653 3478999999998 7799999999999988766777777
Q ss_pred EeCCCCCCCCcccccCHHHHhhcCCC----CCCCcEEEEEC-ChhhHHhhh
Q 020296 254 VDNPTKNWKGGVGYISKDTALKGLPS----PSDDALILVCG-PPGMMKHVS 299 (328)
Q Consensus 254 ~~~~~~~~~g~~g~i~~~~l~~~~~~----~~~~~~v~vCG-P~~m~~~v~ 299 (328)
.+++. +.+++++. .|.+.... ..++..||||| |+.|++++.
T Consensus 516 fSRd~----~~k~yVqd-~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~ 561 (597)
T TIGR01931 516 FSRDQ----AEKIYVQH-RIREQGAELWQWLQEGAHIYVCGDAKKMAKDVH 561 (597)
T ss_pred EecCC----CCCccHHH-HHHHhHHHHHHHHhCCcEEEEECCCccccHHHH
Confidence 77642 24577764 33322111 11358899999 889999987
No 73
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.92 E-value=4.6e-25 Score=211.31 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=131.9
Q ss_pred ccccccccCCcCCC-CCCeEEEEEEEeCC---------CccchhhhcCC---------------------CCCEEEEEce
Q 020296 129 KYVVRPYTPISDTE-AKGHFDLLIKVYPE---------GKMSQHFASLK---------------------PGDVVEVKGP 177 (328)
Q Consensus 129 ~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~---------G~~S~~L~~l~---------------------~Gd~v~v~GP 177 (328)
....|.|||+|+|. ..+.++|+|+..+. |.+|+||+++. +||.|.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 35889999999985 45789999987643 99999999766 8999999999
Q ss_pred eeccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296 178 IEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 178 ~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
.|.|.++.+...+++|||+||||||+++++++.... .....+++|+|++|+. +|++|.+||++|++.+++++++..
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l~~a 334 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTA 334 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceEEEEE
Confidence 999988776678999999999999999999986532 2224689999999998 799999999999988777999888
Q ss_pred EeCCCCCCCCcccccCHHHHhhcC----CCCCCCcEEEEECChh-hHHhhh
Q 020296 254 VDNPTKNWKGGVGYISKDTALKGL----PSPSDDALILVCGPPG-MMKHVS 299 (328)
Q Consensus 254 ~~~~~~~~~g~~g~i~~~~l~~~~----~~~~~~~~v~vCGP~~-m~~~v~ 299 (328)
.+++.. ..++++. .+.+.. ....++..||+|||+. |+++++
T Consensus 335 ~Sr~~~----~k~yVq~-~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~ 380 (416)
T cd06204 335 FSREQP----KKVYVQH-RLAEHAEQVWELINEGAYIYVCGDAKNMARDVE 380 (416)
T ss_pred ECcCCC----CCcchHH-HHHHhHHHHHHHHHcCCEEEEECCcccchHHHH
Confidence 887543 3456553 232211 0011348899999998 999987
No 74
>PLN02631 ferric-chelate reductase
Probab=99.91 E-value=3.9e-23 Score=205.79 Aligned_cols=170 Identities=21% Similarity=0.309 Sum_probs=138.5
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCCc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEGK 158 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G~ 158 (328)
..++++++.+++++.++++..++ ...+.||||++++++.. +..++||||++|.|+ +++.++|+||.. |.
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~--~~~~~PGQfvfL~~p~~------s~~q~HPFSIaSsp~~~~~~L~~~IK~~--Gg 378 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTP--GLHYTPTSILFLHVPSI------SKLQWHPFTITSSSNLEKDTLSVVIRRQ--GS 378 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCC--CCcCCCCceEEEEeccC------CccceEEEEEeccCCCCCCEEEEEEEcC--Ch
Confidence 36788888899999988887553 36789999999999875 567899999999874 468899999985 88
Q ss_pred cchhhhc-CCC-CC--EEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEeeCCCc
Q 020296 159 MSQHFAS-LKP-GD--VVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYGNISPD 230 (328)
Q Consensus 159 ~S~~L~~-l~~-Gd--~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r~~~ 230 (328)
+|++|++ ++. |+ +|.++||||.+..+....++++|||||+||||+++++++++++..+ .++|+|+|++|+.+
T Consensus 379 ~T~~L~~~l~~~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~ 458 (699)
T PLN02631 379 WTQKLYTHLSSSIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH 458 (699)
T ss_pred HHHHHHHhhhcCCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH
Confidence 9999984 544 45 6888999998665555678999999999999999999999864221 24799999999999
Q ss_pred hhhhHHHHHHHH-----HhCCCeEEEEEEeCCCC
Q 020296 231 DILLKQKLDILA-----ASHPNLKVFYTVDNPTK 259 (328)
Q Consensus 231 d~~~~~el~~l~-----~~~~~~~v~~~~~~~~~ 259 (328)
|+.+.|||..+. -+..|+++..++++++.
T Consensus 459 dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 459 DLAFLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred HhhhHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 999999998631 11347999999998754
No 75
>PRK06214 sulfite reductase; Provisional
Probab=99.91 E-value=1.8e-23 Score=203.60 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=124.5
Q ss_pred cccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhh-cCCCCCEEEEEc--eeeccccCCCCCceEEEEecC
Q 020296 130 YVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFA-SLKPGDVVEVKG--PIEKLRYSPNMKKHIGMIAGG 197 (328)
Q Consensus 130 ~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~G--P~G~~~~~~~~~~~ivlIAgG 197 (328)
...|+|||+|.|. ..+.++|+||.. +.|.+|+||+ ++++||+|.+.+ |.| |.++.+...++||||+|
T Consensus 314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~G 392 (530)
T PRK06214 314 LQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPADPNTPIIMVGPG 392 (530)
T ss_pred CCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCCCCCCCEEEEcCC
Confidence 4579999999986 368999999865 4699999998 799999998865 445 88876656799999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEEEeeC-CCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHh--
Q 020296 198 TGITPMLQVIEAILKNPDDNTQVSLLYGNI-SPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTAL-- 274 (328)
Q Consensus 198 tGItP~~~ll~~l~~~~~~~~~i~L~~~~r-~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~-- 274 (328)
||||||++++++..... ...+++|||++| +..|++|.+||++|.+..+.++++...+++.. .+++++. .|.
T Consensus 393 TGIAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~----~k~YVQ~-~L~e~ 466 (530)
T PRK06214 393 TGIAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGE----EKTYVQD-RMREN 466 (530)
T ss_pred eeHHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCC----CCCchhh-HHHHH
Confidence 99999999999876432 236899999996 46799999999999988777777777777543 2355553 222
Q ss_pred --hcCCCCCCCcEEEEECChh-hHHhhh
Q 020296 275 --KGLPSPSDDALILVCGPPG-MMKHVS 299 (328)
Q Consensus 275 --~~~~~~~~~~~v~vCGP~~-m~~~v~ 299 (328)
+......++..||||||.. |.++++
T Consensus 467 ~~~l~~~l~~~a~iYVCGp~~~M~~~V~ 494 (530)
T PRK06214 467 GAELWKWLEEGAHFYVCGDAKRMAKDVE 494 (530)
T ss_pred HHHHHhhhcCCcEEEEeCChHHHHHHHH
Confidence 1111112358899999976 447776
No 76
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.90 E-value=1.6e-22 Score=202.41 Aligned_cols=197 Identities=18% Similarity=0.235 Sum_probs=144.6
Q ss_pred EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCCccc
Q 020296 82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEGKMS 160 (328)
Q Consensus 82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G~~S 160 (328)
.+++++..++++.++++..+ ....+.||||+++.++.. +..++||||++|.|. +++.++|.||.. |.+|
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~--~~~~f~PGQfV~L~vp~~------s~~q~HPFSIaS~p~~~~~~l~~~IK~~--gG~T 384 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKD--PGLKYAPTSVIFMKIPSI------SRFQWHPFSITSSSNIDDHTMSVIIKCE--GGWT 384 (722)
T ss_pred EEEEEEEecCCEEEEEEECC--CCCCcCCCeeEEEEECCC------CceeEEEEEeecCCCCCCCeEEEEEEeC--CCch
Confidence 45566777777766666544 357899999999999865 567899999999763 567899999986 6677
Q ss_pred hhhhc-----CCCC------CEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEe
Q 020296 161 QHFAS-----LKPG------DVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYG 225 (328)
Q Consensus 161 ~~L~~-----l~~G------d~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~ 225 (328)
+.|.+ +++| .++.|+||+|.+..+....++++|||||+||||++++++++.+.... ..+|+|+|+
T Consensus 385 ~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~ 464 (722)
T PLN02844 385 NSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYV 464 (722)
T ss_pred HHHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEE
Confidence 77752 3344 38999999998766555678999999999999999999999864321 257999999
Q ss_pred eCCCchhhhHHHHHH-----HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhh-----cCCCCCCCcEEEEECChhh
Q 020296 226 NISPDDILLKQKLDI-----LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALK-----GLPSPSDDALILVCGPPGM 294 (328)
Q Consensus 226 ~r~~~d~~~~~el~~-----l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~-----~~~~~~~~~~v~vCGP~~m 294 (328)
+|+.+|+.+.+++.. +.++ .++++++++++++... .++++ .++. .+.-..+...+.+|||...
T Consensus 465 vR~~~dL~~~del~~~l~~~~~~~-~~lkl~iyVTRE~~~~----~rl~~-~i~~~~~~~~~~~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 465 VKKSQDICLLNPISSLLLNQSSNQ-LNLKLKVFVTQEEKPN----ATLRE-LLNQFSQVQTVNFSTKCSRYAIHGLESF 537 (722)
T ss_pred ECCHHHhhhHHHHHHHhHHhHHHh-cCceEEEEECCCCCCC----Cchhh-HhhccchhhhcCCCCCCCceEEeCCCch
Confidence 999999999998763 2222 3688888888865431 25542 2222 1111224577999999753
No 77
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.90 E-value=3.5e-23 Score=205.41 Aligned_cols=179 Identities=22% Similarity=0.242 Sum_probs=137.6
Q ss_pred CCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhh-cCCCCCEEEEE
Q 020296 106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFA-SLKPGDVVEVK 175 (328)
Q Consensus 106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~ 175 (328)
..+.+||++.+..+ ...|+|||+|+|. ..++++|+|+.+ ..|.+|.||+ .+++||+|.+.
T Consensus 370 ~~~~~~q~l~ll~~----------l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~ 439 (600)
T PRK10953 370 AQLDAEQLIGLLRP----------LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVF 439 (600)
T ss_pred CCCCHHHHHHhCCC----------CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEE
Confidence 46778888776543 2579999999985 357888887542 4688999998 59999999999
Q ss_pred ceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEE
Q 020296 176 GPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 176 GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
+|.+ .|.++.+...+++|||+|||||||++++++..... ...+++|||++|+ ..|++|.+||++|.+.+...+++..
T Consensus 440 ~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~a 518 (600)
T PRK10953 440 IEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLA 518 (600)
T ss_pred eccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEE
Confidence 9775 79888776789999999999999999999987653 3478999999998 7799999999999988665567777
Q ss_pred EeCCCCCCCCcccccCHHHHhh---cCCCCCCCcEEEEECCh-hhHHhhh
Q 020296 254 VDNPTKNWKGGVGYISKDTALK---GLPSPSDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 254 ~~~~~~~~~g~~g~i~~~~l~~---~~~~~~~~~~v~vCGP~-~m~~~v~ 299 (328)
.+++.. .++||+..+.+. ......++..|||||+. .|.++|.
T Consensus 519 fSRd~~----~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~ 564 (600)
T PRK10953 519 WSRDQK----EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVE 564 (600)
T ss_pred ECCCCC----CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHH
Confidence 776542 356776433221 11111235899999996 5778886
No 78
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.87 E-value=2.3e-22 Score=174.02 Aligned_cols=217 Identities=21% Similarity=0.226 Sum_probs=150.8
Q ss_pred CCCCCeEEEEEEEEEEecCCeeEEEEEcCC--CCCCCcccceEEEEEecCCCCCCCCCcccccc--ccCCcCCCCCCeEE
Q 020296 73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDP--SAKLGLDVASCILTRAPLGQDAEGNTKYVVRP--YTPISDTEAKGHFD 148 (328)
Q Consensus 73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~--~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~Rp--YTi~s~~~~~~~l~ 148 (328)
-.+++|.+|+|++.+..+.|++.+++.... -..+...|||||.+....++. ....-|- ||..+.. .++.++
T Consensus 144 ~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~----~~k~~~~~~~S~~~~t-~rN~~R 218 (385)
T KOG3378|consen 144 RGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGL----SHKTLREYSLSNRVDT-CRNQFR 218 (385)
T ss_pred cCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCcc----chhHHHHHHHhhhhhh-hcccee
Confidence 358899999999999999999999998654 234556899999887655411 1223344 4444433 368899
Q ss_pred EEEEEeCCCccchhhh-cCCCCCEEEEEceeeccccCC---CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296 149 LLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSP---NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY 224 (328)
Q Consensus 149 l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~---~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~ 224 (328)
|.||+.-+|.+|+++| ++++||.|.++.|-|+|.+.. +...+++++|||+||||+++|++..+.- |
T Consensus 219 ~sVr~~A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C----------~ 288 (385)
T KOG3378|consen 219 ISVRRVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC----------Y 288 (385)
T ss_pred EEEeehhchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc----------C
Confidence 9999999999999999 899999999999999998864 5568999999999999999999976542 2
Q ss_pred eeCCCchh---------hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhH
Q 020296 225 GNISPDDI---------LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295 (328)
Q Consensus 225 ~~r~~~d~---------~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~ 295 (328)
.+|-...+ .+.+.-+.+.....+.+=.+ ++.. -..-|+++.+++.-+ + .++||.|||..+|
T Consensus 289 ~~RP~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~I-V~~~------~~~iI~~~~L~~~~~--s-~~DiY~~G~~~~M 358 (385)
T KOG3378|consen 289 SSRPFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQI-VDEV------MTRIINEEDLEKLDL--S-ECDIYMLGPNNYM 358 (385)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh-hhhh------hhhhcCHHHhhhcCh--h-hCceeeeCcHHHH
Confidence 22211100 00011111111111111111 1110 123456666665432 2 4899999999999
Q ss_pred HhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 296 KHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 296 ~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+.+. +-|+++|+.++.|+.
T Consensus 359 ~~~~-------------~~L~~L~~~~~~v~~ 377 (385)
T KOG3378|consen 359 RFVK-------------QELVKLGVEPNKVQS 377 (385)
T ss_pred HHHH-------------HHHHHhcCCccceec
Confidence 9997 999999999998874
No 79
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.87 E-value=4e-22 Score=155.84 Aligned_cols=105 Identities=40% Similarity=0.797 Sum_probs=90.5
Q ss_pred EEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHH
Q 020296 193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKD 271 (328)
Q Consensus 193 lIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~ 271 (328)
||||||||||+++|+++++++ +...+|+|+|++|+.+|+++.++|+++++++++ +++..+ +..+.+|.+..|+++..
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~ 78 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL 78 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence 799999999999999999976 456899999999999999999999999999998 777666 66677888999999977
Q ss_pred HHhhcCC--CCCCCcEEEEECChhhHHhhh
Q 020296 272 TALKGLP--SPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 272 ~l~~~~~--~~~~~~~v~vCGP~~m~~~v~ 299 (328)
++++.+. ....+..||+|||++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~ 108 (109)
T PF00175_consen 79 LLEDLLPEKIDPDDTHVYICGPPPMMKAVR 108 (109)
T ss_dssp HHHHHHHHHHCTTTEEEEEEEEHHHHHHHH
T ss_pred HHHhhcccccCCCCCEEEEECCHHHHHHhc
Confidence 7666554 122468999999999999986
No 80
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.86 E-value=3.5e-21 Score=148.09 Aligned_cols=98 Identities=35% Similarity=0.678 Sum_probs=89.1
Q ss_pred EEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK 158 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~ 158 (328)
+++|+++++++++++.|+|++++ .....+.||||+.++++.. +....|+|||++.+.+.+.++|+||.+++|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~------~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~ 74 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPIN------GKQVSRPYSPASSPDDKGYLEFAIKRYPNGR 74 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEET------TEEEEEEEEBCSSTTSSSEEEEEEEECTTSH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccC------CcceecceeEeeecCCCCcEEEEEEeccCCH
Confidence 47999999999999999999996 5568899999999999854 6779999999999998899999999999999
Q ss_pred cchhhhcCCCCCEEEEEceeecccc
Q 020296 159 MSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 159 ~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
+|+||+++++||+|.++||+|+|.|
T Consensus 75 ~S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 75 VSRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp HHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred HHHHHHhCCCCCEEEEEEcccccCC
Confidence 9999999999999999999999864
No 81
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.2e-19 Score=174.21 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=128.6
Q ss_pred cccccccCCcCCCCC-CeEEEEEEEe--------CCCccchhhhcCCC-CCEEEEEceee-ccccCCCCCceEEEEecCc
Q 020296 130 YVVRPYTPISDTEAK-GHFDLLIKVY--------PEGKMSQHFASLKP-GDVVEVKGPIE-KLRYSPNMKKHIGMIAGGT 198 (328)
Q Consensus 130 ~~~RpYTi~s~~~~~-~~l~l~Vk~~--------~~G~~S~~L~~l~~-Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGt 198 (328)
...|-|||+|++... ++++++|..+ ..|.+|.||+++.+ ||+|.+....+ +|.++.+...+|+|||.||
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GT 450 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGT 450 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCC
Confidence 478999999998754 6677766543 23778999997666 99999887666 7999887779999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH-----
Q 020296 199 GITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT----- 272 (328)
Q Consensus 199 GItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~----- 272 (328)
||||+++++++...+.. ..+++||||+|+ ..|++|.+|++++.+..-.+++....++++. .+-||+..+
T Consensus 451 GIAPFRafvq~r~~~~~-~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~----~KiYVQd~lre~~d 525 (587)
T COG0369 451 GIAPFRAFVQERAANGA-EGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE----EKIYVQDRLREQAD 525 (587)
T ss_pred CchhHHHHHHHHHhccc-cCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC----CCccHHHHHHHhHH
Confidence 99999999999887743 358999999999 7799999999999887556888888888753 345565322
Q ss_pred -HhhcCCCCCCCcEEEEEC-ChhhHHhhh
Q 020296 273 -ALKGLPSPSDDALILVCG-PPGMMKHVS 299 (328)
Q Consensus 273 -l~~~~~~~~~~~~v~vCG-P~~m~~~v~ 299 (328)
|.+.+. +...+|||| ...|.+.|.
T Consensus 526 el~~~l~---~ga~~YVCGd~~~Ma~dV~ 551 (587)
T COG0369 526 ELWEWLE---EGAHIYVCGDAKGMAKDVE 551 (587)
T ss_pred HHHHHHH---CCCEEEEeCCCccchHHHH
Confidence 223332 348999999 899999997
No 82
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.1e-18 Score=174.72 Aligned_cols=214 Identities=15% Similarity=0.226 Sum_probs=154.2
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
...+++.++.-++.|+..+++.-|+ ...++||||+++.+|.- ...++|||||+|+| +++++.++||.. |
T Consensus 354 ~~~~~i~~~~llp~~vi~L~~~Kp~--~f~y~~Gqyifv~~p~l------s~~qwHPFTItSsp-~dd~lsvhIk~~--g 422 (646)
T KOG0039|consen 354 QKNVKIAKVVLLPSDVLELIMSKPP--GFKYKPGQYIFVNCPSL------SKLEWHPFTITSAP-EDDFLSVHIKAL--G 422 (646)
T ss_pred hcCceEEEEEEcCCCeEEEEEeCCC--CCCCCCCCEEEEECccc------cccccCCceeecCC-CCCEEEEEEEec--C
Confidence 3458999999999999999998774 57899999999998876 78899999999999 679999999998 8
Q ss_pred ccchhhhc-CC------------CCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCC---------
Q 020296 158 KMSQHFAS-LK------------PGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD--------- 215 (328)
Q Consensus 158 ~~S~~L~~-l~------------~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~--------- 215 (328)
++|+.|.+ +. ..-++.|+||||.-..+-..++.++||+||+|+||+.+++++++.+-+
T Consensus 423 ~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~ 502 (646)
T KOG0039|consen 423 DWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTS 502 (646)
T ss_pred cHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccc
Confidence 99999973 32 144799999999865555678899999999999999999999985322
Q ss_pred ------CCCeEEEEEeeCCCchh-hhHHHHHHHHHhCC--CeEEEEEEeCCC----CCC-------------------C-
Q 020296 216 ------DNTQVSLLYGNISPDDI-LLKQKLDILAASHP--NLKVFYTVDNPT----KNW-------------------K- 262 (328)
Q Consensus 216 ------~~~~i~L~~~~r~~~d~-~~~~el~~l~~~~~--~~~v~~~~~~~~----~~~-------------------~- 262 (328)
...++..+|.+|...+. .+.+.+.++...+. -.+++.+++..- ..+ .
T Consensus 503 ~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g 582 (646)
T KOG0039|consen 503 DYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTG 582 (646)
T ss_pred cccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccccc
Confidence 12468999998876665 45555555553321 145555544210 000 0
Q ss_pred ----CcccccCH-HHHhhcCCCC-CCCcEEEEECChhhHHhhhccc
Q 020296 263 ----GGVGYISK-DTALKGLPSP-SDDALILVCGPPGMMKHVSGEK 302 (328)
Q Consensus 263 ----g~~g~i~~-~~l~~~~~~~-~~~~~v~vCGP~~m~~~v~g~~ 302 (328)
-+.||.+- +.+++..... .....|++|||+.|.+.++..+
T Consensus 583 ~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~ 628 (646)
T KOG0039|consen 583 LKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLC 628 (646)
T ss_pred ceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHH
Confidence 12234432 2233222211 1127899999999999998433
No 83
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.75 E-value=7.2e-18 Score=165.49 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=123.1
Q ss_pred cccccccCCcCCC-CCCeEEEEEE--EeCC--------CccchhhhcCCCCCEEEEEceeec--cccCCCCCceEEEEec
Q 020296 130 YVVRPYTPISDTE-AKGHFDLLIK--VYPE--------GKMSQHFASLKPGDVVEVKGPIEK--LRYSPNMKKHIGMIAG 196 (328)
Q Consensus 130 ~~~RpYTi~s~~~-~~~~l~l~Vk--~~~~--------G~~S~~L~~l~~Gd~v~v~GP~G~--~~~~~~~~~~ivlIAg 196 (328)
...|+|||+|++. ..+.+++++- .++. |..|+||.++++|+.+..-+|.+. |.++++...+++|||-
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGp 499 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGP 499 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcC
Confidence 4889999999774 3455665543 3322 778999999999999986556664 6677677789999999
Q ss_pred CccHHHHHHHHHHHHhCCCC----CCeEEEEEeeCCCchh-hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCH-
Q 020296 197 GTGITPMLQVIEAILKNPDD----NTQVSLLYGNISPDDI-LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISK- 270 (328)
Q Consensus 197 GtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r~~~d~-~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~- 270 (328)
||||||+++++++......+ ..-++||||+|+.++. +|.+|++++.+..-++++....++.+. +.+-|++.
T Consensus 500 GTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~---~~k~YVQd~ 576 (645)
T KOG1158|consen 500 GTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQT---PKKIYVQDR 576 (645)
T ss_pred CCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCC---CCceehhhH
Confidence 99999999999998754221 1228999999988765 999999999766555888888888753 23344442
Q ss_pred -----HHHhhcCCCCCCCcEEEEECChh-hHHhhhc
Q 020296 271 -----DTALKGLPSPSDDALILVCGPPG-MMKHVSG 300 (328)
Q Consensus 271 -----~~l~~~~~~~~~~~~v~vCGP~~-m~~~v~g 300 (328)
+.+.+.+.. ++.++||||+.. |.++|..
T Consensus 577 l~e~~d~v~~~L~~--~~g~iYvCGd~~~Ma~dV~~ 610 (645)
T KOG1158|consen 577 LREYADEVWELLKK--EGGHIYVCGDAKGMAKDVQD 610 (645)
T ss_pred HHHHHHHHHHHHhc--CCcEEEEecCCccchHHHHH
Confidence 223333322 368999999999 9999963
No 84
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.8e-15 Score=131.49 Aligned_cols=218 Identities=16% Similarity=0.198 Sum_probs=164.8
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCC-cccceEEEEEecCCCCC--------------CCCCccccccccCC
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLG-LDVASCILTRAPLGQDA--------------EGNTKYVVRPYTPI 138 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~-~~~Gq~v~l~~~~~~~~--------------~~~~~~~~RpYTi~ 138 (328)
....+.++|+.++++|++..+++|.-+. ..... ....||+.+.++.+... ++......|.|||.
T Consensus 14 ~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR 93 (265)
T COG2375 14 GPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIR 93 (265)
T ss_pred cccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceee
Confidence 3456789999999999999999999887 22223 34455999999876321 01123579999999
Q ss_pred cCCCCCCeEEEEEEEe-CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCC
Q 020296 139 SDTEAKGHFDLLIKVY-PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDN 217 (328)
Q Consensus 139 s~~~~~~~l~l~Vk~~-~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~ 217 (328)
+.+.+.++|.+-+-.+ ++|..|+|..+.++||+|.|.||.|.+..+ ...+.++||+.-|++..+..+|+++...
T Consensus 94 ~~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~-~~~~~~lLigDetAlPAIa~iLE~lp~~---- 168 (265)
T COG2375 94 AVDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLVPP-EAADWYLLIGDETALPAIARILETLPAD---- 168 (265)
T ss_pred eecccccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCCCC-CCcceEEEeccccchHHHHHHHHhCCCC----
Confidence 8887889999988877 889999999999999999999999996554 4578999999999999999999987654
Q ss_pred CeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcC---CCCCCCcEEEEECChhh
Q 020296 218 TQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGL---PSPSDDALILVCGPPGM 294 (328)
Q Consensus 218 ~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~---~~~~~~~~v~vCGP~~m 294 (328)
.+.+.+..+.+.+|. ++ +. ..++++++++...... +..++...+ ..+.....||+.|...+
T Consensus 169 ~~~~a~lev~d~ad~---~~---l~-~~~~l~~~Wl~r~~~~---------~~~ll~~a~~~~~~P~~~~~vwiagE~~~ 232 (265)
T COG2375 169 TPAEAFLEVDDAADR---DE---LP-SPDDLELEWLARDDAP---------TEQLLAAALAQAALPAGDYYVWIAGEASA 232 (265)
T ss_pred CceEEEEEeCChHHh---hc---cC-CCCceeEEEecCCCcc---------chHHHHHHHhcccCCCCceEEEEeccHHH
Confidence 567888888877764 22 21 1244888888654321 334444333 23334579999999999
Q ss_pred HHhhhcccccCCCcchHHHHHh-hcCCCCCCeE
Q 020296 295 MKHVSGEKAKDYSQGELSGILK-DLGYTEQMVY 326 (328)
Q Consensus 295 ~~~v~g~~~~~~~qg~~~~~L~-~~G~~~~~I~ 326 (328)
++.++ ..|+ +.|++++.|+
T Consensus 233 v~~~R-------------k~L~~e~g~dk~~i~ 252 (265)
T COG2375 233 VKAIR-------------KFLRNERGFDKSRVR 252 (265)
T ss_pred HHHHH-------------HHHhhhcCCCHHHhh
Confidence 99998 6666 5699998875
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.64 E-value=7.1e-15 Score=150.13 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=104.1
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
-...+|++++.++++++.++++.|. ....++||||++++.+... .......||+|+.+.+.+.|.++|+++.. |
T Consensus 790 ~l~~~Vv~~~~lap~i~~L~l~aP~-iA~~~kPGQFVmL~~~~~g---~~~l~~p~P~SI~~vD~e~g~It~i~rvV--G 863 (1028)
T PRK06567 790 LLTSRVNKINILDDKTFELIIHSPL-AAKNFKFGQFFRLQNYSED---AAKLIEPVALSPIDIDVEKGLISFIVFEV--G 863 (1028)
T ss_pred hhceEEEEEEEecCCEEEEEEeCcc-hhhcCCCCceEEEEeCCCC---CccccCceeEEeeccCCCCCEEEEEEEEE--C
Confidence 3468999999999999999999875 2235789999999974320 00112457899999888889999999999 9
Q ss_pred ccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296 158 KMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY 224 (328)
Q Consensus 158 ~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~ 224 (328)
..|+.|+++++||.|.+.||+|+ |..+ ..+++++||||+|++| +++++.+.+ .+|..|.
T Consensus 864 kgT~~Ls~l~~Gd~v~v~GPLG~pF~i~--~~k~vLLVgGGVGiAp---Lak~Lk~~G---~~V~~~~ 923 (1028)
T PRK06567 864 KSTSLCKTLSENEKVVLMGPTGSPLEIP--QNKKIVIVDFEVGNIG---LLKVLKENN---NEVIFVT 923 (1028)
T ss_pred hHHHHHhcCCCCCEEEEEcccCCCCCCC--CCCeEEEEEccccHHH---HHHHHHHCC---CeEEEEE
Confidence 99999999999999999999997 5443 2478999999999997 556665543 3454444
No 86
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.56 E-value=1.5e-14 Score=135.03 Aligned_cols=157 Identities=24% Similarity=0.386 Sum_probs=114.8
Q ss_pred cccccccCCcCCCCCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccH
Q 020296 130 YVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGI 200 (328)
Q Consensus 130 ~~~RpYTi~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGI 200 (328)
...|.|||+|.+.. -.++|+|-.+ ..|-+|+||++|++|++|.+.---|.+.++.+...+++||+-||||
T Consensus 366 IrPR~fSIas~~~~-~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGv 444 (574)
T KOG1159|consen 366 IRPRAFSIASSPGA-HHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGV 444 (574)
T ss_pred cccceeeeccCCCC-CceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCCCCCCCeEEEcCCCCc
Confidence 46799999999875 4488766432 4699999999999999998887778877776667899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCH------HHH
Q 020296 201 TPMLQVIEAILKNPDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISK------DTA 273 (328)
Q Consensus 201 tP~~~ll~~l~~~~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~------~~l 273 (328)
||+++++++..-+. .....||||||+.+ |.+|.+|+.++.+. .++...+++++. +-||+. +.+
T Consensus 445 APfRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~~----~~~~AFSRDqe~----kvYVQh~i~e~g~~v 514 (574)
T KOG1159|consen 445 APFRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNKR----AFHTAFSRDQEQ----KVYVQHKIRENGEEV 514 (574)
T ss_pred ccHHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhcc----hhhhhccccccc----ceeHHHHHHHhhHHH
Confidence 99999999977432 24558999999876 78888888777653 334444555442 234431 122
Q ss_pred hhcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296 274 LKGLPSPSDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 274 ~~~~~~~~~~~~v~vCGP~-~m~~~v~ 299 (328)
.+.+.+ .+..|||||+. .|-.+|+
T Consensus 515 ~~Ll~~--~gA~~fvaGsS~~MP~~V~ 539 (574)
T KOG1159|consen 515 WDLLDN--LGAYFFVAGSSGKMPKDVK 539 (574)
T ss_pred HHHHhc--cCCEEEEecCCCCCcHHHH
Confidence 222222 36899999997 6767765
No 87
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.53 E-value=2.1e-14 Score=119.43 Aligned_cols=112 Identities=22% Similarity=0.410 Sum_probs=70.3
Q ss_pred CceEEEEecCccHHHHHHHHHHHHhCC----CCCCeEEEEEeeCCCchh-hhHHHHHHHHHhC--CCeEEEEEEeCCCCC
Q 020296 188 KKHIGMIAGGTGITPMLQVIEAILKNP----DDNTQVSLLYGNISPDDI-LLKQKLDILAASH--PNLKVFYTVDNPTKN 260 (328)
Q Consensus 188 ~~~ivlIAgGtGItP~~~ll~~l~~~~----~~~~~i~L~~~~r~~~d~-~~~~el~~l~~~~--~~~~v~~~~~~~~~~ 260 (328)
+++++|||||+||||+++++++++... ...++|+|+|.+|+.+++ ++.++|+++.... .+++++.++++....
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 478999999999999999999997532 235789999999999987 4554555443322 358888888764321
Q ss_pred C-------------------------------CCcccccCH-HHHhhc-CCCCCCCcEEEEECChhhHHhhh
Q 020296 261 W-------------------------------KGGVGYISK-DTALKG-LPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 261 ~-------------------------------~g~~g~i~~-~~l~~~-~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
. .-..||.+- +++.+. .........|++|||++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr 152 (156)
T PF08030_consen 81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVR 152 (156)
T ss_dssp ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHH
T ss_pred ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHH
Confidence 0 112344443 333333 12233568999999999999997
No 88
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=99.15 E-value=1.8e-10 Score=90.91 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=65.4
Q ss_pred EEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCC---------------CCCccccccccCCcCCCCCC
Q 020296 82 KLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAE---------------GNTKYVVRPYTPISDTEAKG 145 (328)
Q Consensus 82 ~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~---------------~~~~~~~RpYTi~s~~~~~~ 145 (328)
+|++++.+++++.+++|..+. .......+++++.|.++.+.... .......|.||+.+.+.+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 689999999999999999887 33344579999999998763221 11124789999999988889
Q ss_pred eEEEEEEEeCC-CccchhhhcCCCCCEEEEEceeecc
Q 020296 146 HFDLLIKVYPE-GKMSQHFASLKPGDVVEVKGPIEKL 181 (328)
Q Consensus 146 ~l~l~Vk~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~ 181 (328)
+++|-+-.+.+ |..++|..++++||+|.|.||.|.|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 99998888866 8999999999999999999999986
No 89
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.13 E-value=4.2e-12 Score=98.51 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=6.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC--ccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT--KYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~--~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
.+++.+++.+.+++.++++..+.. ...+.||||++|+++.. . .+++|||||++.+. .+.+.|+||.. |
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~-~~~~~pGq~v~l~~p~~------s~~~~q~HPFTIas~~~-~~~i~l~ik~~--g 72 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSS-PFKWKPGQYVFLSFPSI------SKWFWQWHPFTIASSPE-DNSITLIIKAR--G 72 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCC-CCCCCCceEEEEEEcCc------CcCcccccccEeeccCC-CCEEEEEEEeC--C
Confidence 467888899999999888887742 28899999999999765 5 45999999999987 68999999998 8
Q ss_pred ccchhhhcC--------CCCCEEEEEceeec
Q 020296 158 KMSQHFASL--------KPGDVVEVKGPIEK 180 (328)
Q Consensus 158 ~~S~~L~~l--------~~Gd~v~v~GP~G~ 180 (328)
.+|+.|.+. ..+-++.|+||||.
T Consensus 73 ~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 73 GWTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp ------------------------TTSTTSH
T ss_pred CchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 899998753 24457889999996
No 90
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=97.70 E-value=0.00029 Score=55.72 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=68.1
Q ss_pred ceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI 268 (328)
Q Consensus 189 ~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i 268 (328)
++++|+|.-|++..+..+++++... .+++++..+.+.+|... |.. .++++++++..... ...+..
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~~----~~~~v~iev~~~~d~~~---l~~----~~~~~v~wv~r~~~----~~~~~~ 66 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPAD----APGTVFIEVPDEADRQP---LPA----PAGVEVTWVPRDGP----AAQGSA 66 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-TT-----EEEEEEEESSGGG--------------TEEEEEEEE-SS------TT-HH
T ss_pred ceEEEEeccccHHHHHHHHHhCCCC----CeEEEEEEECChHhccc---CCC----CCCCEEEEEeCCCC----CchHHH
Confidence 5789999999999999999987432 68888888888777432 222 34589988875543 011111
Q ss_pred CHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh-hcCCCCCCeEe
Q 020296 269 SKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK-DLGYTEQMVYK 327 (328)
Q Consensus 269 ~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~-~~G~~~~~I~~ 327 (328)
-.+.+.. +..+..+..+|++|...+++.++ ..|. ++|+++++|+-
T Consensus 67 l~~al~~-~~~~~~~~~vW~AgE~~~~r~lR-------------~~l~~~~g~~~~~~~~ 112 (119)
T PF04954_consen 67 LADALRD-LPLPAGDGYVWVAGEASAVRALR-------------RHLREERGLPRDRIYA 112 (119)
T ss_dssp HHHHHTT-S---SS-EEEEEEEEHHHHHHHH-------------HHHHHH----GGGEEE
T ss_pred HHHHHHH-hhccCCCeEEEEEecHHHHHHHH-------------HHHHHhhCCCHHHeEE
Confidence 1223333 33334579999999999999999 6665 88999999873
No 91
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=76.32 E-value=14 Score=33.61 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=53.3
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceE---EEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASC---ILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~---v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
....++|+.++++...-+.+.=...- ..--+...|++ .++-.... +++.--..|||-+ ..|.++-+||
T Consensus 198 eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs---~espYVAaRPFRV-----NAG~VhaYi~ 269 (376)
T COG1465 198 ELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSES---EESPYVAARPFRV-----NAGAVHAYIR 269 (376)
T ss_pred EEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEeccc---ccCcccccCceee-----cccceeEEEE
Confidence 35678999999997664433222111 11223333432 22222211 1122234566653 2477889999
Q ss_pred EeCCCccchhhhcCCCCCEEEEEceee
Q 020296 153 VYPEGKMSQHFASLKPGDVVEVKGPIE 179 (328)
Q Consensus 153 ~~~~G~~S~~L~~l~~Gd~v~v~GP~G 179 (328)
.- |.-|+||+.|+.||.|.|---.|
T Consensus 270 vP--g~kTkYLaEL~aGDeV~iVD~dG 294 (376)
T COG1465 270 VP--GGKTKYLAELKAGDEVLIVDFDG 294 (376)
T ss_pred cC--CCceEEhhhhcCCCeEEEEecCC
Confidence 75 66899999999999998763333
No 92
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=73.32 E-value=4 Score=32.36 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=44.5
Q ss_pred HHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 242 AASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 242 ~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
..++|. +++.-+. -.|+++...+.+.+..-.+...|.-|.|.. -....|.......-..+.+.|+++|+
T Consensus 22 ~~~~p~~vriIrvp---------C~Grv~~~~il~Af~~GADGV~V~gC~~g~-Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 22 RLQYPPNVRIIRVP---------CSGRVDPEFILRAFEKGADGVLVAGCHPGD-CHYREGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred cCCCCCCeEEEEcc---------CCCccCHHHHHHHHHcCCCEEEEeCCCCCC-CCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 335665 7765543 248888888877665544334444576644 22222222122223345699999999
Q ss_pred CCCCeEe
Q 020296 321 TEQMVYK 327 (328)
Q Consensus 321 ~~~~I~~ 327 (328)
++++|.-
T Consensus 92 ~~eRv~~ 98 (124)
T PF02662_consen 92 EPERVRL 98 (124)
T ss_pred ChhHeEE
Confidence 9999863
No 93
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=70.36 E-value=6 Score=37.26 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.4
Q ss_pred ceEEEEecCcc--HHHHHHHHHHHHhC
Q 020296 189 KHIGMIAGGTG--ITPMLQVIEAILKN 213 (328)
Q Consensus 189 ~~ivlIAgGtG--ItP~~~ll~~l~~~ 213 (328)
+++++.||||| |.|.+++++++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 47899999999 99999999998753
No 94
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=66.80 E-value=43 Score=25.37 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCCC--eEEEEEeeCCCchhh--hHHHHHHHHHhCCCeEEEEEEeCCC
Q 020296 200 ITPMLQVIEAILKNPDDNT--QVSLLYGNISPDDIL--LKQKLDILAASHPNLKVFYTVDNPT 258 (328)
Q Consensus 200 ItP~~~ll~~l~~~~~~~~--~i~L~~~~r~~~d~~--~~~el~~l~~~~~~~~v~~~~~~~~ 258 (328)
-.|++..++.-+..+.... .+.|.|-|-+....+ +.+.|++++++...++|.|+.+..+
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~Wyyd~dD 89 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGKVTVNWYYDEDD 89 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCcEEEEEEECCCC
Confidence 4688888888887744332 467888888766554 3466777777767799999987654
No 95
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=57.47 E-value=56 Score=30.61 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCC--CCCCCcccceE---EEEEecCCCCCCCCCccccccccCCcCCCCCCeEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDP--SAKLGLDVASC---ILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDL 149 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~--~~~~~~~~Gq~---v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l 149 (328)
.-...+++|++++++.-.-+ ..+..-. ..--+...|++ .+|....- .+..-...|||-+ +.|-++=
T Consensus 164 ~l~L~~a~Vt~V~~vG~GdR-VCVDtcsll~~gEGmLVGs~s~glfLVhsEt---~~~pYva~RPFRV-----NAGaVha 234 (344)
T PRK02290 164 KLELVPATVTRVEPVGMGDR-VCVDTCSLMEEGEGMLVGSSSRGMFLVHAET---EENPYVASRPFRV-----NAGAVHA 234 (344)
T ss_pred cceeEEEEEEEEEEcCCccE-EEEEccccCCCCceEEEcccCCcEEEEeccc---ccCCCccCCCeeE-----ecCccee
Confidence 34567899999999965543 3333221 12223334432 22222211 0111223344442 2477888
Q ss_pred EEEEeCCCccchhhhcCCCCCEEEEEceeeccccCC-----CCCceEEEEec
Q 020296 150 LIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSP-----NMKKHIGMIAG 196 (328)
Q Consensus 150 ~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-----~~~~~ivlIAg 196 (328)
+|+.- |.-|+||..|+.|++|.+-...|+-.--. -..+++++|=+
T Consensus 235 Yv~~p--gg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeA 284 (344)
T PRK02290 235 YVRVP--GDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEA 284 (344)
T ss_pred EEEcC--CCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEE
Confidence 88875 67899999999999999887777532110 12367777754
No 96
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=57.04 E-value=55 Score=30.78 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCC--CCCCCcccceE---EEEEecCCCCCCCCCccccccccCCcCCCCCCeEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDP--SAKLGLDVASC---ILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDL 149 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~--~~~~~~~~Gq~---v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l 149 (328)
.-...+++|++++++.-.-+ ..+..-. ..--+...|++ .++..... .+..-...|||-+ +.|-++=
T Consensus 174 ~l~L~~a~Vt~V~~vGmGdR-VCVDtcsll~~gEGmLVGs~s~glfLVhsEt---~~~pYva~RPFRV-----NAGaVHa 244 (354)
T PF01959_consen 174 KLELVPATVTRVEPVGMGDR-VCVDTCSLLRPGEGMLVGSSSSGLFLVHSET---HESPYVASRPFRV-----NAGAVHA 244 (354)
T ss_pred cceeEEEEEEEEEEcCCccE-EEEEccccCCCCCeEEEcccCceEEEEEecc---ccCCCCCCCCceE-----ecCccee
Confidence 35678899999999965543 3333221 22233334432 22322221 0111223344442 2477888
Q ss_pred EEEEeCCCccchhhhcCCCCCEEEEEceeec
Q 020296 150 LIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180 (328)
Q Consensus 150 ~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 180 (328)
+|..- |.-|+||..|+.|++|.+-...|+
T Consensus 245 Yv~~p--g~kT~YLSEL~sG~~VlvVd~~G~ 273 (354)
T PF01959_consen 245 YVLMP--GGKTRYLSELRSGDEVLVVDADGR 273 (354)
T ss_pred EEEcC--CCceeehhhhcCCCEEEEEeCCCC
Confidence 88875 668999999999999999877775
No 97
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=56.55 E-value=7.4 Score=40.33 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=19.7
Q ss_pred CCcEEEEECChhhHHhhhccccc
Q 020296 282 DDALILVCGPPGMMKHVSGEKAK 304 (328)
Q Consensus 282 ~~~~v~vCGP~~m~~~v~g~~~~ 304 (328)
.+..|+||||+.|.++++..|+.
T Consensus 674 ~~vgvlv~gp~~~~~~va~~~~~ 696 (722)
T PLN02844 674 SDIGVLVCGPETMKESVASMCRL 696 (722)
T ss_pred CceeEEEeCchHHHHHHHHHHHh
Confidence 57899999999999999966643
No 98
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=54.26 E-value=49 Score=33.38 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccc
Q 020296 187 MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVG 266 (328)
Q Consensus 187 ~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g 266 (328)
...++++||-|+.+.+.++..+.|.+.+-..+=|...|..-= -.+-|.+|++++.. .+++.+. ...|..|
T Consensus 500 ~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPl-----D~~ll~~La~~h~~---~vtlEe~--~~~GG~G 569 (627)
T COG1154 500 EGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPL-----DEALLLELAKSHDL---VVTLEEN--VVDGGFG 569 (627)
T ss_pred cCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCC-----CHHHHHHHHhhcCe---EEEEecC--cccccHH
Confidence 357899999999999999999999876543344444444321 12346778877643 2333221 1122222
Q ss_pred ccCHHHHhhcCCCCCCCcEEEEEC-ChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCe
Q 020296 267 YISKDTALKGLPSPSDDALILVCG-PPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMV 325 (328)
Q Consensus 267 ~i~~~~l~~~~~~~~~~~~v~vCG-P~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I 325 (328)
---.+.+.+. .-...|..-| |..|+. +|...++++++|++.+.|
T Consensus 570 s~v~efl~~~----~~~~~v~~lglpd~fi~-----------hg~~~el~~~~gLd~~~i 614 (627)
T COG1154 570 SAVLEFLAAH----GILVPVLNLGLPDEFID-----------HGSPEELLAELGLDAEGI 614 (627)
T ss_pred HHHHHHHHhc----CCCCceEEecCChHhhc-----------cCCHHHHHHHcCCCHHHH
Confidence 1111222222 1113344434 555544 445568999999988765
No 99
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=53.24 E-value=39 Score=26.56 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=39.0
Q ss_pred hCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEE-----------EEECChhhHHhhhcccccCCCcchH
Q 020296 244 SHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALI-----------LVCGPPGMMKHVSGEKAKDYSQGEL 311 (328)
Q Consensus 244 ~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v-----------~vCGP~~m~~~v~g~~~~~~~qg~~ 311 (328)
+||- +++.-+.- .|+++.+.+.+.+..-. ..| |..|.-.--+-++ -+
T Consensus 25 qyp~~vRiIrv~C---------sGrvn~~fvl~Al~~Ga--DGV~v~GC~~geCHy~~GN~ka~rR~~----------~l 83 (132)
T COG1908 25 QYPPNVRIIRVMC---------SGRVNPEFVLKALRKGA--DGVLVAGCKIGECHYISGNYKAKRRME----------LL 83 (132)
T ss_pred cCCCceEEEEeec---------cCccCHHHHHHHHHcCC--CeEEEecccccceeeeccchHHHHHHH----------HH
Confidence 4554 66655542 48888887776654432 234 4455544433333 23
Q ss_pred HHHHhhcCCCCCCeEe
Q 020296 312 SGILKDLGYTEQMVYK 327 (328)
Q Consensus 312 ~~~L~~~G~~~~~I~~ 327 (328)
.++|+++|+.+++|..
T Consensus 84 ke~l~elgie~eRv~~ 99 (132)
T COG1908 84 KELLKELGIEPERVRV 99 (132)
T ss_pred HHHHHHhCCCcceEEE
Confidence 4999999999999864
No 100
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=51.32 E-value=55 Score=23.87 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
..+|.+++.. ++..+++++.|+.....+..|..+.+- |. ..|+.... .+.|.|.+-.. -..
T Consensus 7 ~g~I~~i~~~-~~~~~~~i~~~~~~~~~~~~g~SIavn----------Gv----cLTV~~~~--~~~f~~~l~~e--Tl~ 67 (85)
T PF00677_consen 7 TGKIISIEKN-GDSQRLRIEIPDKILSDLKIGGSIAVN----------GV----CLTVTDIN--EDWFEVDLIPE--TLR 67 (85)
T ss_dssp EEEEEEEEEE-SSEEEEEEEESTGGGGTG-TTSEEEET----------TE----EEEEEEEE--TTEEEEEEEHH--HHH
T ss_pred EEEEEEEEEC-CCCEEEEEEcCHHHHhhCccCcEEEEC----------Ce----eeEEEEec--CCEEEEechHH--Hhh
Confidence 3567777766 567889999985444567778766542 21 34555554 35677765443 223
Q ss_pred chhhhcCCCCCEEEEE
Q 020296 160 SQHFASLKPGDVVEVK 175 (328)
Q Consensus 160 S~~L~~l~~Gd~v~v~ 175 (328)
...|..+++||.|.+.
T Consensus 68 ~T~l~~~~~G~~VNlE 83 (85)
T PF00677_consen 68 RTTLGNLKVGDRVNLE 83 (85)
T ss_dssp CSSGGG--TTSEEEEE
T ss_pred hchhccCCCCCEEEEe
Confidence 4567889999999875
No 101
>PLN02631 ferric-chelate reductase
Probab=50.07 E-value=11 Score=39.01 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.7
Q ss_pred CCcEEEEECChhhHHhhhcccc
Q 020296 282 DDALILVCGPPGMMKHVSGEKA 303 (328)
Q Consensus 282 ~~~~v~vCGP~~m~~~v~g~~~ 303 (328)
++..|+||||+.|-.+++..|+
T Consensus 662 ~~vgvlv~gp~~~~~~va~~c~ 683 (699)
T PLN02631 662 EDVGVMVCGPRKMRHEVAKICS 683 (699)
T ss_pred CceeEEEECcHHHHHHHHHHHh
Confidence 4799999999999999985543
No 102
>PLN02292 ferric-chelate reductase
Probab=49.56 E-value=11 Score=39.05 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.7
Q ss_pred CCcEEEEECChhhHHhhhcccc
Q 020296 282 DDALILVCGPPGMMKHVSGEKA 303 (328)
Q Consensus 282 ~~~~v~vCGP~~m~~~v~g~~~ 303 (328)
++..|+||||+.|-++++..|+
T Consensus 665 ~~vgvlv~gp~~~~~~va~~c~ 686 (702)
T PLN02292 665 SSVGVLVCGPKKMRQKVAKICS 686 (702)
T ss_pred CceeEEEECcHHHHHHHHHHHh
Confidence 4789999999999999985543
No 103
>PRK00036 primosomal replication protein N; Reviewed
Probab=49.45 E-value=68 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=25.9
Q ss_pred eEEEEEEEeCCCccchhhhcCCCCCEEEEEceeec
Q 020296 146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180 (328)
Q Consensus 146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 180 (328)
.+.+-|...--|.....+.++.+|..+.+.|-.-.
T Consensus 44 qv~~~i~ava~G~~a~~~~~l~~Gs~v~v~GFLa~ 78 (107)
T PRK00036 44 RVELTISAVALGDLALLLADTPLGTEMQVQGFLAP 78 (107)
T ss_pred eEEEEEEEEEEhhHHHHhcccCCCCEEEEEEEEEE
Confidence 34444444444889999999999999999986553
No 104
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=48.59 E-value=15 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=16.2
Q ss_pred ccccccccCCcCCC-CCCeEEEEEEEe
Q 020296 129 KYVVRPYTPISDTE-AKGHFDLLIKVY 154 (328)
Q Consensus 129 ~~~~RpYTi~s~~~-~~~~l~l~Vk~~ 154 (328)
....|.|||+|++. ..+.++|+|..+
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCcceeecccccCCCCEEEEEEEEE
Confidence 45789999999874 468899988765
No 105
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.58 E-value=1.3e+02 Score=24.84 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=5.0
Q ss_pred HHHHhhhhhc
Q 020296 44 GGVSYYCYFS 53 (328)
Q Consensus 44 ~~~~~~~~~~ 53 (328)
++++|+|+..
T Consensus 32 g~gg~~~~~~ 41 (162)
T PRK07021 32 AGAGYSWWLS 41 (162)
T ss_pred HHHHHHHHhh
Confidence 3455545543
No 106
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=44.34 E-value=99 Score=27.38 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=36.6
Q ss_pred EEEecC-ccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEE
Q 020296 192 GMIAGG-TGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252 (328)
Q Consensus 192 vlIAgG-tGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~ 252 (328)
+||.|| =||. +.+++++++.+ .-.+++..+|+++.- .+|++.+...++++++.-
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~---~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~ 60 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK---GIEVIIATARDPEKA--ATELALKSKSDSRVHIIQ 60 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC---CcEEEEEecCChHHh--hHHHHHhhccCCceEEEE
Confidence 566664 3553 56778777553 356677778877765 678888888888876643
No 107
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=43.39 E-value=87 Score=27.43 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=31.8
Q ss_pred ceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh--------------------hhHH-HHHHHHHhCCC
Q 020296 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI--------------------LLKQ-KLDILAASHPN 247 (328)
Q Consensus 189 ~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~--------------------~~~~-el~~l~~~~~~ 247 (328)
..|++=+|++||. +.+.+...+.++ .++.+.|+++.+ --++ -.+.+.+.||+
T Consensus 6 nTiLITGG~sGIG--l~lak~f~elgN-----~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~ 78 (245)
T COG3967 6 NTILITGGASGIG--LALAKRFLELGN-----TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPN 78 (245)
T ss_pred cEEEEeCCcchhh--HHHHHHHHHhCC-----EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence 3555566668887 455666665543 355555554322 1223 34556678888
Q ss_pred eEEEE
Q 020296 248 LKVFY 252 (328)
Q Consensus 248 ~~v~~ 252 (328)
+++..
T Consensus 79 lNvli 83 (245)
T COG3967 79 LNVLI 83 (245)
T ss_pred hheee
Confidence 76643
No 108
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=42.97 E-value=57 Score=23.15 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=39.5
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCC---CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE---AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
...+|..|.++.... + ..+.|+++...+ +.+ +.....+..+.|...++||++.+..|.|...+
T Consensus 5 ~V~~Gs~V~l~~~~~------~--~~~~~~lv~~~~~~~~~~------~IS~~SPLG~ALlG~~~Gd~v~~~~~~g~~~~ 70 (77)
T PF01272_consen 5 VVTIGSTVTLKDLDD------G--EEETYTLVGPDEADPDNG------KISIDSPLGKALLGKKVGDEVEVELPGGERKY 70 (77)
T ss_dssp B-STTEEEEEEETTT------T--EEEEEEEE-GGG-BSTST------EEETTSHHHHHHTT-BTT-EEEEEETTBEEEE
T ss_pred EEEeCCEEEEEECCC------C--CEEEEEEEeEhHhCCcee------EEEecCHHHHHhcCCCCCCEEEEEeCCceEEE
Confidence 356788888876433 2 455677765432 223 22334778888999999999999999986443
No 109
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=42.91 E-value=44 Score=27.62 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=40.1
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCC---CCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDT---EAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~---~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
...|..|.+.... + ....|+++.+. ...+.+.+ ..++.+.|...++||+|.+..|.|...+
T Consensus 86 V~~Gs~V~l~d~~-------~--~~~~~~iVgp~e~d~~~~~IS~------~SPlG~ALlGk~vGd~v~v~~p~g~~~~ 149 (157)
T PRK01885 86 VFFGAWVEIENED-------G--EEKRFRIVGPDEIDGRKGYISI------DSPMARALLKKEVGDEVTVNTPAGEAEW 149 (157)
T ss_pred EEeCCEEEEEECC-------C--CEEEEEEEChHHhCcCCCeEec------cCHHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 4566777776422 2 33456665442 23344443 3778889999999999999999997544
No 110
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=41.05 E-value=1e+02 Score=27.98 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHH
Q 020296 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKD 271 (328)
Q Consensus 192 vlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~ 271 (328)
+++=|+.-|.-....++.+.+++ .++.++--+-+...-.+.+.|..+. ..+....-+++ .|.++.+
T Consensus 18 vl~~G~~~ipga~e~l~~L~~~g---~~~iflTNn~~~s~~~~~~~L~~~~--~~~~~~~~i~T---------S~~at~~ 83 (269)
T COG0647 18 VLYRGNEAIPGAAEALKRLKAAG---KPVIFLTNNSTRSREVVAARLSSLG--GVDVTPDDIVT---------SGDATAD 83 (269)
T ss_pred ceEeCCccCchHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHhhc--CCCCCHHHeec---------HHHHHHH
Confidence 57788999999999999988763 3444443333444444555555532 11122222222 2556666
Q ss_pred HHhhcCCCCCCCcEEEEECChhhHHhhhcc
Q 020296 272 TALKGLPSPSDDALILVCGPPGMMKHVSGE 301 (328)
Q Consensus 272 ~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~ 301 (328)
.+.+..+. ..||+-|.++..+.+.+.
T Consensus 84 ~l~~~~~~----~kv~viG~~~l~~~l~~~ 109 (269)
T COG0647 84 YLAKQKPG----KKVYVIGEEGLKEELEGA 109 (269)
T ss_pred HHHhhCCC----CEEEEECCcchHHHHHhC
Confidence 77665432 789999999988877643
No 111
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=40.42 E-value=32 Score=28.18 Aligned_cols=48 Identities=33% Similarity=0.463 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCccchh--hhcCCCCC--EEEEEceeeccccCCCCCceEEEEecCccH
Q 020296 147 FDLLIKVYPEGKMSQH--FASLKPGD--VVEVKGPIEKLRYSPNMKKHIGMIAGGTGI 200 (328)
Q Consensus 147 l~l~Vk~~~~G~~S~~--L~~l~~Gd--~v~v~GP~G~~~~~~~~~~~ivlIAgGtGI 200 (328)
+-+.|+.+|+-...+| +.++--|| .|.+.||+-.+ .+..+-|.|||||
T Consensus 61 ~Cvliq~~p~k~GdryEaiySfyfGdyGhISvqGpy~t~------eDtyLAVTGGtGi 112 (176)
T PF06351_consen 61 ICVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY------EDTYLAVTGGTGI 112 (176)
T ss_dssp EEEEEEEECCCTEEEEEEEEEEE-GGGEEEEEEEEEETT------S-EEEEEEEEEET
T ss_pred EEEEEEeccccCCceEEEEEEEEecccceEEEecccccc------cceeEEEeccCce
Confidence 4556666654333333 23455566 78888888774 2567899999998
No 112
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=39.93 E-value=1.7e+02 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=19.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCC
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDP 102 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~ 102 (328)
..+...-+.++++...++|+...
T Consensus 35 ~~~~~gf~vv~d~~v~v~f~Vtr 57 (112)
T PF14155_consen 35 SAEVIGFEVVDDSTVEVTFDVTR 57 (112)
T ss_pred eEEEEEEEECCCCEEEEEEEEEE
Confidence 57888888899999999998775
No 113
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=39.73 E-value=37 Score=28.11 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=42.6
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeE--EEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHF--DLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l--~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
....|..|.+...+ + ..+.|+|...+..+ .. .. =+.....++.+.|-..++||+|.+..|.|...+
T Consensus 82 ~V~~Gs~Vtl~~~~-------g--~~~~~~IVg~~e~d-~~~~~~-~~IS~~SPlG~ALlGk~vGD~v~v~~p~g~~~~ 149 (158)
T PRK05892 82 TLPGGTEVTLRFPD-------G--EVETMHVISVVEET-PVGREA-ETLTADSPLGQALAGHQAGDTVTYSTPQGPAQV 149 (158)
T ss_pred EEEcCcEEEEEECC-------C--CEEEEEEeCchhcC-cccccC-CEEccCCHHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 34567888777522 2 45678887654321 11 01 122345778889999999999999999986443
No 114
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=38.85 E-value=53 Score=31.08 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.4
Q ss_pred eEEEEecCcc--HHHHHHHHHHHHhCC
Q 020296 190 HIGMIAGGTG--ITPMLQVIEAILKNP 214 (328)
Q Consensus 190 ~ivlIAgGtG--ItP~~~ll~~l~~~~ 214 (328)
.++|.||||| |.|.+++++++.+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g 28 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG 28 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC
Confidence 5789999998 999999999998875
No 115
>PHA02099 hypothetical protein
Probab=37.99 E-value=40 Score=23.53 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=34.2
Q ss_pred eEEEEEEEeCCCccchhhhcCCCCCEEEEEceeec-c-ccCCCCCceEEEEecCc
Q 020296 146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK-L-RYSPNMKKHIGMIAGGT 198 (328)
Q Consensus 146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~-~-~~~~~~~~~ivlIAgGt 198 (328)
+|.++|+....|+.-+|+.+|+.-++|. |.|. + .+.......|+|-|.|-
T Consensus 2 efkiiv~s~~~gpid~yi~~lkn~~rv~---pg~~emhilr~~~g~diifha~gy 53 (84)
T PHA02099 2 EFKIIVKSSAKGPVDQYIANLKNAGRVG---PGESEMHILRNFEGVDIVFHAEGY 53 (84)
T ss_pred ceEEEEecccCCCHHHHHHhhhccCccC---CCCcEEEEEeecCCccEEEEcCCC
Confidence 4778899888899999999999877763 5552 1 22333445666666653
No 116
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=36.69 E-value=39 Score=27.79 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=40.3
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
....|..|.++.... + ....|+++.+... +.-.-.| ....+..+.|-..++||+|.+..|.|...+
T Consensus 85 ~V~~Gs~V~l~~~~~------~--~~~~~~lvg~~e~-d~~~~~I--S~~SPlG~aLlGk~~Gd~v~~~~p~g~~~~ 150 (157)
T PRK00226 85 KVKFGSTVTLKDLDT------D--EEETYQIVGSDEA-DPKQGKI--SIESPIARALIGKKVGDTVEVTTPGGEYEY 150 (157)
T ss_pred EEecCCEEEEEECCC------C--CEEEEEEEChhhc-CccCCee--ccCChHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 345677777764332 2 3456776644321 2111122 234677888999999999999999986443
No 117
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=36.55 E-value=43 Score=27.35 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=38.7
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
...|..|.+..... + ....|+++.+...+ .... +.....++.+.|...++||.|.+..|.|...+
T Consensus 81 V~~Gs~V~l~~~~~------g--~~~~~~lVgp~e~d--~~~~-~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~~~~ 145 (151)
T TIGR01462 81 VGFGSTVTIKDLDT------G--EEETYTIVGSWEAD--PKEG-KISIDSPLGKALIGKKVGDVVEVQTPKGEKEY 145 (151)
T ss_pred EeeCCEEEEEECCC------C--CEEEEEEECchhcC--ccCC-eecCCCHHHHHHcCCCCCCEEEEEeCCCcEEE
Confidence 45566666664321 2 33456665543211 1111 22234677788899999999999999986443
No 118
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=36.30 E-value=69 Score=24.95 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=23.8
Q ss_pred EEEEecCcc--HHHHHHHHHHHHhCCCCCCeEEE
Q 020296 191 IGMIAGGTG--ITPMLQVIEAILKNPDDNTQVSL 222 (328)
Q Consensus 191 ivlIAgGtG--ItP~~~ll~~l~~~~~~~~~i~L 222 (328)
|+++++||+ +-|++++.++|.+++ -+|.+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG---h~V~~ 31 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG---HEVRL 31 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC---CeEEE
Confidence 678899997 999999999999875 35663
No 119
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=34.63 E-value=1.1e+02 Score=26.40 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCC
Q 020296 75 PDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLG 121 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~ 121 (328)
.+....++|++.+.++. ++..++|.+++ ....|.||.++.|.....
T Consensus 5 ~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~-~~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 5 RKNPFPATVLENRRLTSPGSDRSTRHIELDLSD-SGLSYQPGDHLGVYPPND 55 (219)
T ss_dssp TTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TT-STG---TT-EEEEE-SSE
T ss_pred CCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCC-CCCcccCCCEEEEEccCC
Confidence 45566799999999976 36778888774 368899999999986543
No 120
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=34.18 E-value=4.3e+02 Score=25.36 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=61.0
Q ss_pred ceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEeeCCCc-h--hhhHHHHH-HHHHhCCCeEEEEEEeCCCCC
Q 020296 189 KHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYGNISPD-D--ILLKQKLD-ILAASHPNLKVFYTVDNPTKN 260 (328)
Q Consensus 189 ~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r~~~-d--~~~~~el~-~l~~~~~~~~v~~~~~~~~~~ 260 (328)
+++++|+.|+-=-| ++.+..+..++.. ...=.++|+.+... . .-....++ .+.+. +.+++.-+ .
T Consensus 286 ~~~vii~tg~~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~-----h 357 (422)
T TIGR00649 286 ENYLIITTGSQGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEV--GARVIKRI-----H 357 (422)
T ss_pred ccEEEEEeCCCCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhc--CCEEEece-----E
Confidence 57788886665555 4445556554321 01123777764322 1 11112233 23332 23332200 1
Q ss_pred CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296 261 WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY 326 (328)
Q Consensus 261 ~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~ 326 (328)
..|..+.+.++..+.....+..|-|-|...+....+ ..+++.|++.++|+
T Consensus 358 ---~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~-------------~~a~~~g~~~~~~~ 407 (422)
T TIGR00649 358 ---VSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHT-------------KLAEEEGYPGENIF 407 (422)
T ss_pred ---ecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHH-------------HHHHHcCCCcccEE
Confidence 123444455554433323357788999999988887 88899999988876
No 121
>PLN02343 allene oxide cyclase
Probab=33.75 E-value=52 Score=28.11 Aligned_cols=49 Identities=33% Similarity=0.445 Sum_probs=30.7
Q ss_pred eEEEEEEEeCCCccchh--hhcCCCCC--EEEEEceeeccccCCCCCceEEEEecCccH
Q 020296 146 HFDLLIKVYPEGKMSQH--FASLKPGD--VVEVKGPIEKLRYSPNMKKHIGMIAGGTGI 200 (328)
Q Consensus 146 ~l~l~Vk~~~~G~~S~~--L~~l~~Gd--~v~v~GP~G~~~~~~~~~~~ivlIAgGtGI 200 (328)
-+-++|+.+|+-..-+| +.+.--|| .|.+.|||-.|. +..+-|.||+||
T Consensus 111 G~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpyltye------Dt~LaiTGGsGi 163 (229)
T PLN02343 111 GLCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYE------DTYLAITGGSGI 163 (229)
T ss_pred eeEEEEEeccccCCceeEEEEEEEecCcceeEEeccccccc------cceEEeecCcce
Confidence 36677887764222222 22333454 577788876642 467899999997
No 122
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=32.61 E-value=61 Score=26.58 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=43.0
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
....|+.|.+...+. + ..+.|+|+.....+. ..=.|- -..++.+.|...++||++.+.+|.|...+
T Consensus 78 ~V~~Gs~V~~~~~~~------g--e~~~~~iVg~~ead~-~~~~IS--~~SPig~aLlGk~vGd~v~v~~p~g~~~~ 143 (151)
T COG0782 78 VVTFGSTVTLENLDD------G--EEVTYTIVGPDEADP-AKGKIS--VDSPLGRALLGKKVGDTVEVNTPGGEKEV 143 (151)
T ss_pred EEecCCEEEEEECCC------C--CEEEEEEEccccccc-ccCcee--ccCHHHHHHhCCCCCCEEEEecCCceEEE
Confidence 456788888775542 2 567899887754221 000111 13678888999999999999999555443
No 123
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=32.56 E-value=15 Score=30.96 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhc
Q 020296 21 FGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFS 53 (328)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (328)
.++.|.++.+|....+.+++..+| ++||-|.+
T Consensus 35 S~g~pG~sGsN~~Y~l~vG~t~~g-ag~YaYkT 66 (180)
T PF14962_consen 35 SSGVPGGSGSNMVYYLVVGVTVSG-AGYYAYKT 66 (180)
T ss_dssp ---------------------------------
T ss_pred cCCCCCCCCceEEEEEEECeEEEe-eEEEEEEe
Confidence 344555555544444444444444 55545643
No 124
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=31.68 E-value=3.5e+02 Score=24.99 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=42.2
Q ss_pred eEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-e--EEEEE
Q 020296 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-L--KVFYT 253 (328)
Q Consensus 190 ~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~--~v~~~ 253 (328)
++++|+.|..+-+++.++.+++.... ..++++.-+.+.-+-.+.+.|++|...+.. + +++.+
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I 66 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPI 66 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEE
Confidence 67899999999999999999876532 466666666543334455568888665543 4 55433
No 125
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=29.44 E-value=4.7e+02 Score=25.07 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=25.6
Q ss_pred EEEEEEEEE-ecC--CeeEEEEEcCCCCCCCcccceEEEEEecCC
Q 020296 80 GFKLQDTAR-VSH--NSHLFRFSFDPSAKLGLDVASCILTRAPLG 121 (328)
Q Consensus 80 ~~~v~~~~~-~s~--~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~ 121 (328)
..+|..+.+ +++ .+..+++.++. ....++||+++.+.+...
T Consensus 279 ~g~v~~i~p~vd~~trt~~vrv~l~N-~~~~L~pGm~v~v~i~~~ 322 (409)
T PRK09783 279 TIRKWTLLPSVDAATRTLQLRLEVDN-ADEALKPGMNAWLQLNTA 322 (409)
T ss_pred EEEEEEEccccCCCCcEEEEEEEEeC-CCCccCCCCEEEEEEecC
Confidence 456665553 233 34456666653 345689999999988643
No 126
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=29.28 E-value=3e+02 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=26.6
Q ss_pred EEEEEEEEEEec-CC--eeEEEEEcCCCCCCCcccceEEEEEecCC
Q 020296 79 IGFKLQDTARVS-HN--SHLFRFSFDPSAKLGLDVASCILTRAPLG 121 (328)
Q Consensus 79 ~~~~v~~~~~~s-~~--~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~ 121 (328)
.+.+|.++.... +. +..+++.++. ....+.+|+++.+.+...
T Consensus 155 ~~g~v~~I~~~~~~~~~~~~v~~~~~~-~~~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 155 LPARVDYVGPEVDGSSRTAKVRVLIKN-ENLTLKPGLFVQVRVETK 199 (265)
T ss_pred EEEEEEEEccccCCCCceEEEEEEEeC-CCCccCCCCEEEEEEecC
Confidence 457777777442 23 3445555553 234589999999998654
No 127
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.66 E-value=96 Score=25.55 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=39.5
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCCC---CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE---AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
...|..|.+.... + ..+.|+++.+.. ..+.+. ...++.+.|...++||+|.+..|.|...+
T Consensus 84 V~~Gs~V~l~d~~-------~--~~~~~~iVgp~ead~~~~~IS------~~SPlG~ALlGk~~GD~v~v~~p~g~~~~ 147 (156)
T TIGR01461 84 VFFGAWVELENDD-------G--VTHRFRIVGYDEIDGRKNYIS------IDSPLARALLKKEVGDEVVVNTPAGEASW 147 (156)
T ss_pred EecCeEEEEEECC-------C--CEEEEEEEChHHhCcCCCeEC------CCCHHHHHHcCCCCCCEEEEEcCCCcEEE
Confidence 4557777776422 2 345676654432 223332 44778888999999999999999996544
No 128
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=28.20 E-value=87 Score=28.90 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.8
Q ss_pred eEEEEecCccHHHHHHHHHHHH
Q 020296 190 HIGMIAGGTGITPMLQVIEAIL 211 (328)
Q Consensus 190 ~ivlIAgGtGItP~~~ll~~l~ 211 (328)
+++.|+||||.+-+++=++++.
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~ 23 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVL 23 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhcc
Confidence 6899999999999999998874
No 129
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=27.07 E-value=1e+02 Score=24.61 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeeccccC
Q 020296 140 DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYS 184 (328)
Q Consensus 140 ~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~ 184 (328)
.|.++|..-|.=-+...|.+=..|.++++||.|.+.-+.+.+.|.
T Consensus 40 ~pG~~gn~viaGH~~~~~~~F~~L~~l~~Gd~i~v~~~~~~~~Y~ 84 (137)
T cd05830 40 MPGEVGNFAVAGHRTTYGAPFNDLDKLRPGDKIVVETADGWYTYV 84 (137)
T ss_pred CCCCCCcEEEEecCCCCCcccccHhhCCCCCEEEEEECCeEEEEE
Confidence 333345544433222223344567899999999999888877665
No 130
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=26.56 E-value=37 Score=34.91 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=46.8
Q ss_pred EEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhc
Q 020296 221 SLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300 (328)
Q Consensus 221 ~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g 300 (328)
.+-|++.+..+-++--+|-.... .|.++++-++++.. +...|...+...+|+|||.-.-..=-|
T Consensus 202 ~~~~~~~~~gerylst~~~~~~~-~~~l~lyNTltr~k---------------e~f~P~~~~~V~mYvCGPTVYd~~HIG 265 (699)
T PRK14535 202 NVPWSVSTGTEQKLSSEQQRLIH-NPMTTIYNTLTRQK---------------EPFAPIDPENVRMYVCGMTVYDYCHLG 265 (699)
T ss_pred CCCceeccCcceeechhhhcccc-cCceEEEECCCCCe---------------eccccCCCCceEEEecCCcCCCCCccc
Confidence 45677777777666665554442 34577766655421 122233334688999999754332222
Q ss_pred ccccCCCcchHHHHHhhcCCCC
Q 020296 301 EKAKDYSQGELSGILKDLGYTE 322 (328)
Q Consensus 301 ~~~~~~~qg~~~~~L~~~G~~~ 322 (328)
..+.-..-.-+...|+.+|++-
T Consensus 266 HaRt~V~~DVL~R~Lr~~Gy~V 287 (699)
T PRK14535 266 HARVMVVFDMIARWLRECGYPL 287 (699)
T ss_pred chhHHHHHHHHHHHHHHcCCce
Confidence 2222222233457777777643
No 131
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=26.49 E-value=1.9e+02 Score=28.10 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=34.2
Q ss_pred eEEEEecCccHHHHHHHHHHHHhCCCC--CCeEEEEEeeCCCchhhhHHHHHHHHHhC-CCeEEEEEEeC
Q 020296 190 HIGMIAGGTGITPMLQVIEAILKNPDD--NTQVSLLYGNISPDDILLKQKLDILAASH-PNLKVFYTVDN 256 (328)
Q Consensus 190 ~ivlIAgGtGItP~~~ll~~l~~~~~~--~~~i~L~~~~r~~~d~~~~~el~~l~~~~-~~~~v~~~~~~ 256 (328)
+|++|+||+.-| ..+++.++..++. ...|.|+=......+. ...-.+.+.++. +++++..+.+.
T Consensus 2 KI~iIGgGS~~t--p~li~~l~~~~~~l~~~ei~L~Did~~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~ 68 (425)
T cd05197 2 KIAIIGGGSSFT--PELVSGLLKTPEELPISEVTLYDIDEERLDI-ILTIAKRYVEEVGADIKFEKTMDL 68 (425)
T ss_pred EEEEECCchHhH--HHHHHHHHcChhhCCCCEEEEEcCCHHHHHH-HHHHHHHHHHhhCCCeEEEEeCCH
Confidence 589999999644 4688888877632 2445554322211222 222233344433 34777666543
No 132
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=25.15 E-value=3e+02 Score=22.41 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEE
Q 020296 105 KLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEV 174 (328)
Q Consensus 105 ~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v 174 (328)
.-++-+|-.-+...... +...+|.|.+...|+=+|...+.||.. |.+. +.+|....+
T Consensus 98 ~~NilVG~~~~MEYsv~------g~~~W~~y~p~npP~~~G~~~V~VR~K--~~mn-----~~~G~~~~l 154 (158)
T PF13285_consen 98 EKNILVGATEYMEYSVD------GGNNWHTYDPANPPDFSGDQTVYVRHK--GEMN-----LEAGETTTL 154 (158)
T ss_pred ccceEeccccEEEEeec------CccccEeCCcCCCCCCCCceEEEEEec--cccc-----CCCCceEEE
Confidence 34455555555555554 556899999999998889999999986 6553 566665544
No 133
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=24.06 E-value=5.5e+02 Score=23.38 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=35.0
Q ss_pred CceEEEEec---CccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC--eEEEEEE
Q 020296 188 KKHIGMIAG---GTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN--LKVFYTV 254 (328)
Q Consensus 188 ~~~ivlIAg---GtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~--~~v~~~~ 254 (328)
.+++++|.| |.|.+-. ..++...+.+.+++++..+|+.... .+-..++..-||. .++.+++
T Consensus 2 ~RKvalITGanSglGl~i~----~RLl~~~De~~~ltl~ltcR~~~ka--e~vc~~lk~f~p~~~i~~~yvl 67 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAIC----KRLLAEDDENVRLTLCLTCRNMSKA--EAVCAALKAFHPKSTIEVTYVL 67 (341)
T ss_pred CceEEEEecCCCcccHHHH----HHHHhccCCceeEEEEEEeCChhHH--HHHHHHHHHhCCCceeEEEEEE
Confidence 356777765 4555544 4444444445789999999986542 1224455555663 5555543
No 134
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=23.61 E-value=3.9e+02 Score=22.76 Aligned_cols=18 Identities=0% Similarity=-0.241 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHHHHh
Q 020296 31 KFRFPFGAIAAVAGGVSY 48 (328)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~ 48 (328)
.+|+.+.++++++++++|
T Consensus 5 ~~~~~~il~~~~l~l~~W 22 (192)
T PRK10893 5 RRWVIILLALIALVLIGW 22 (192)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777777777677777
No 135
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=57 Score=31.94 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=30.9
Q ss_pred CCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296 277 LPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT 321 (328)
Q Consensus 277 ~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~ 321 (328)
.|...+...+|||||.-.-..=-|..+......-+..+|+.+|+.
T Consensus 16 ~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~ 60 (464)
T COG0215 16 VPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60 (464)
T ss_pred cCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCe
Confidence 333334589999999766555555555555566677899999883
No 136
>PRK11797 D-ribose pyranase; Provisional
Probab=23.49 E-value=1e+02 Score=24.93 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=40.3
Q ss_pred ccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhC
Q 020296 158 KMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 213 (328)
Q Consensus 158 ~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~ 213 (328)
+.+..|.++.=||+|.|. ..+|+.++. .+.+..+-|.|+..+.++++.++..
T Consensus 10 ~Ll~~La~mGHgD~ivI~--Dag~P~~~~--~~~idla~~~g~p~f~~vl~aIL~~ 61 (139)
T PRK11797 10 EISSVIARLGHTDTLVIC--DAGLPIPNG--VERIDLALTKGVPSFLDVLDVVLSE 61 (139)
T ss_pred HHHHHHHHcCCCCeEEEc--CCCCCCCCC--CceEEeccCCCCCCHHHHHHHHHHh
Confidence 345566788899999885 456666543 4568999999999999999999865
No 137
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=23.37 E-value=1.4e+02 Score=27.40 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.8
Q ss_pred eEEEEecCcc---HHHHHHHHHHHHh
Q 020296 190 HIGMIAGGTG---ITPMLQVIEAILK 212 (328)
Q Consensus 190 ~ivlIAgGtG---ItP~~~ll~~l~~ 212 (328)
+|++.++|+| ++|.+++++++.+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~ 26 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN 26 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC
Confidence 4788899999 8999999999775
No 138
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=23.09 E-value=52 Score=20.59 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=7.7
Q ss_pred CCCCCCchhHHHHHHHH
Q 020296 26 KSDFNKFRFPFGAIAAV 42 (328)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ 42 (328)
....+|.+|.++..+++
T Consensus 7 ~~~~RRdFL~~at~~~g 23 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVG 23 (41)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 44446677755544333
No 139
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=22.20 E-value=34 Score=28.67 Aligned_cols=14 Identities=50% Similarity=0.897 Sum_probs=12.8
Q ss_pred ceEEEEecCccHHH
Q 020296 189 KHIGMIAGGTGITP 202 (328)
Q Consensus 189 ~~ivlIAgGtGItP 202 (328)
-.+++.-||||+||
T Consensus 68 ~DvvlttGGTG~t~ 81 (169)
T COG0521 68 VDVVLTTGGTGITP 81 (169)
T ss_pred CCEEEEcCCccCCC
Confidence 57899999999998
No 140
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=90 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.9
Q ss_pred CCceEEEEecCccHHHHHHHHHHHH
Q 020296 187 MKKHIGMIAGGTGITPMLQVIEAIL 211 (328)
Q Consensus 187 ~~~~ivlIAgGtGItP~~~ll~~l~ 211 (328)
+...++.|+||||+.-+++-++.+.
T Consensus 6 ~~~kvvvlgGGtGl~~lL~gLk~~~ 30 (323)
T COG0391 6 KKPKVVVLGGGTGLPKLLSGLKRLL 30 (323)
T ss_pred cCceEEEEcCCCCHHHHHHHHHhhc
Confidence 3468999999999999999999876
No 141
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=21.73 E-value=1.6e+02 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=27.7
Q ss_pred cCCCCCCeEEEEEEEe-CCCccchhhhcCCCCCEEEEEceeeccccC
Q 020296 139 SDTEAKGHFDLLIKVY-PEGKMSQHFASLKPGDVVEVKGPIEKLRYS 184 (328)
Q Consensus 139 s~~~~~~~l~l~Vk~~-~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~ 184 (328)
..|.+.|.+-|.=-.. ..|.+=..|.+|++||.|.+.-..+.+.|.
T Consensus 37 ~~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~~~~~~Y~ 83 (126)
T cd06166 37 AMPGENGNFAIAGHRSYTYGRIFNRLDEVEKGDEIKVTTKNGTYKYK 83 (126)
T ss_pred CCCCCCceEEEEeCcCCCCCcccCChHHCCCCCEEEEEECCEEEEEE
Confidence 3444445544433221 134444568899999999999876655554
No 142
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.58 E-value=2.6e+02 Score=25.10 Aligned_cols=59 Identities=22% Similarity=0.412 Sum_probs=36.0
Q ss_pred ceEEEEecCccHHHH-HHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEE
Q 020296 189 KHIGMIAGGTGITPM-LQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252 (328)
Q Consensus 189 ~~ivlIAgGtGItP~-~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~ 252 (328)
.++++..||++-..+ ..+++.+.+.. ..-+++++.+.... ..++++++.+.+++++++.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~----~~~~l~~~~~~~~~i~~~~ 230 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP----NLDELKKFAKEYPNIILFI 230 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc----CHHHHHHHHHhCCCEEEEe
Confidence 467777888887654 35566554432 22467777665443 2367878777777766543
No 143
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=21.54 E-value=1.2e+02 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceee
Q 020296 143 AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE 179 (328)
Q Consensus 143 ~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G 179 (328)
..+.+..++.....+.+..++..++.|+.|.+.|-..
T Consensus 25 ~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~ 61 (85)
T cd04100 25 GSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVV 61 (85)
T ss_pred CCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEE
Confidence 3466777766433233445677899999999998544
No 144
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.42 E-value=1.6e+02 Score=22.08 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred ecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHH
Q 020296 195 AGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTA 273 (328)
Q Consensus 195 AgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l 273 (328)
-|+.=|.-....++.+.+.+ +-.++..|.+ ...--+.+.|..+- -.+...-+++ .+....+.+
T Consensus 11 ~g~~~ipga~e~l~~L~~~g----~~~~~lTNns~~s~~~~~~~L~~~G---i~~~~~~i~t---------s~~~~~~~l 74 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRERG----KPVVFLTNNSSRSREEYAKKLKKLG---IPVDEDEIIT---------SGMAAAEYL 74 (101)
T ss_dssp ETTEE-TTHHHHHHHHHHTT----SEEEEEES-SSS-HHHHHHHHHHTT---TT--GGGEEE---------HHHHHHHHH
T ss_pred eCCCcCcCHHHHHHHHHHcC----CCEEEEeCCCCCCHHHHHHHHHhcC---cCCCcCEEEC---------hHHHHHHHH
Confidence 36666777777888777663 3344444443 33334444444431 1111111111 234445556
Q ss_pred hhcCCCCCCCcEEEEECChhhHHhhh
Q 020296 274 LKGLPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 274 ~~~~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
++. .....||+.|++++.+.++
T Consensus 75 ~~~----~~~~~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 75 KEH----KGGKKVYVLGSDGLREELR 96 (101)
T ss_dssp HHH----TTSSEEEEES-HHHHHHHH
T ss_pred Hhc----CCCCEEEEEcCHHHHHHHH
Confidence 554 2358999999998866654
No 145
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=21.13 E-value=1.7e+02 Score=21.56 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecc
Q 020296 145 GHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKL 181 (328)
Q Consensus 145 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 181 (328)
+.+...+=+ +.|.+.+....+++||+|.+.|-...+
T Consensus 28 ~~i~cv~f~-~~g~~~~~~~~l~~Gd~V~v~G~v~~y 63 (91)
T cd04482 28 GEIDCAAYE-PTKEFRDVVRLLIPGDEVTVYGSVRPG 63 (91)
T ss_pred cEEEEEEEC-cccccccccCCCCCCCEEEEEEEEecC
Confidence 345443322 224455555689999999999865544
No 146
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=20.46 E-value=68 Score=29.72 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=17.4
Q ss_pred EEEEecCccHHHHHHHHHHHH
Q 020296 191 IGMIAGGTGITPMLQVIEAIL 211 (328)
Q Consensus 191 ivlIAgGtGItP~~~ll~~l~ 211 (328)
|++|+||||..-+++=++++.
T Consensus 1 iv~igGGtGl~~ll~gLk~~~ 21 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFP 21 (309)
T ss_pred CEEEeccccHHHHHHHHHhcC
Confidence 589999999999887777553
No 147
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.01 E-value=2.5e+02 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=19.1
Q ss_pred CcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 283 DALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 283 ~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
-..||.|.|......+. ..+.+.|+
T Consensus 67 ~Dvvf~a~~~~~~~~~~-------------~~~~~~g~ 91 (121)
T PF01118_consen 67 VDVVFLALPHGASKELA-------------PKLLKAGI 91 (121)
T ss_dssp ESEEEE-SCHHHHHHHH-------------HHHHHTTS
T ss_pred CCEEEecCchhHHHHHH-------------HHHhhCCc
Confidence 36899999999998887 66666665
Done!