Query 020296
Match_columns 328
No_of_seqs 313 out of 1650
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 5.5E-48 1.9E-52 343.7 29.2 240 70-328 3-243 (243)
2 1umk_A B5R, NADH-cytochrome B5 100.0 2.3E-46 7.9E-51 339.3 27.5 243 67-328 5-275 (275)
3 2cnd_A NADH-dependent nitrate 100.0 3.7E-43 1.3E-47 317.3 25.4 235 74-327 8-268 (270)
4 1tvc_A Methane monooxygenase c 100.0 4.3E-43 1.5E-47 313.6 21.5 233 72-327 4-241 (250)
5 2r6h_A NADH:ubiquinone oxidore 100.0 1.2E-41 4E-46 310.5 27.0 240 73-327 5-286 (290)
6 1qfj_A Protein (flavin reducta 100.0 4.9E-42 1.7E-46 303.2 23.2 222 79-327 3-226 (232)
7 4eh1_A Flavohemoprotein; struc 100.0 2.4E-41 8.1E-46 300.7 25.3 225 76-327 1-232 (243)
8 1gvh_A Flavohemoprotein; oxido 100.0 6.9E-41 2.4E-45 318.5 25.7 233 74-327 148-387 (396)
9 1cqx_A Flavohemoprotein; globi 100.0 1.1E-40 3.7E-45 317.9 26.7 232 74-327 150-393 (403)
10 1fdr_A Flavodoxin reductase; f 100.0 2.4E-40 8.1E-45 295.3 23.9 225 77-326 3-237 (248)
11 1krh_A Benzoate 1,2-dioxygenas 100.0 3.4E-40 1.2E-44 307.4 24.4 225 76-327 106-332 (338)
12 4g1v_A Flavohemoglobin; three 100.0 2.6E-39 8.8E-44 308.0 27.2 226 75-327 146-387 (399)
13 2bgi_A Ferredoxin-NADP(H) redu 100.0 4.2E-39 1.4E-43 291.3 23.7 224 78-326 16-256 (272)
14 2qdx_A Ferredoxin reductase; o 100.0 2E-39 6.8E-44 290.9 19.3 224 77-326 2-249 (257)
15 3vo2_A Putative uncharacterize 100.0 1.7E-38 5.7E-43 292.6 24.0 223 71-299 26-278 (310)
16 3lo8_A Ferredoxin--NADP reduct 100.0 1.3E-38 4.4E-43 293.4 23.3 228 69-299 19-279 (311)
17 4fk8_A Ferredoxin--NADP reduct 100.0 1.1E-39 3.9E-44 294.7 15.8 226 75-326 16-258 (271)
18 3jqq_A Ferredoxin NADP reducta 100.0 1.6E-38 5.6E-43 293.3 19.0 237 74-327 11-313 (316)
19 1fnb_A Ferredoxin-NADP+ reduct 100.0 3.1E-37 1E-41 284.7 23.4 223 71-299 30-282 (314)
20 1ep3_B Dihydroorotate dehydrog 100.0 1.3E-37 4.4E-42 280.0 20.4 207 80-321 7-215 (262)
21 2b5o_A FNR, ferredoxin--NADP r 100.0 5E-37 1.7E-41 292.1 23.1 222 71-299 115-370 (402)
22 2pia_A Phthalate dioxygenase r 100.0 8.7E-37 3E-41 282.5 23.1 216 74-327 4-222 (321)
23 2bmw_A Ferredoxin--NADP reduct 100.0 2.9E-36 9.9E-41 276.8 23.5 236 72-322 15-286 (304)
24 2rc5_A Ferredoxin-NADP reducta 100.0 4E-36 1.4E-40 277.1 20.8 228 73-320 16-291 (314)
25 2gpj_A Siderophore-interacting 100.0 8.2E-34 2.8E-38 253.8 20.7 216 75-327 5-223 (252)
26 1ddg_A Sulfite reductase (NADP 100.0 3.6E-30 1.2E-34 242.3 8.7 175 107-299 145-338 (374)
27 1f20_A Nitric-oxide synthase; 99.9 1.2E-27 4.2E-32 229.2 14.3 165 131-299 209-397 (435)
28 4dql_A Bifunctional P-450/NADP 99.9 4.6E-27 1.6E-31 222.3 13.8 163 130-299 169-355 (393)
29 2qtl_A MSR;, methionine syntha 99.9 2.2E-27 7.4E-32 232.5 11.4 168 131-299 290-502 (539)
30 1tll_A Nitric-oxide synthase, 99.9 8.8E-27 3E-31 234.6 15.3 165 131-299 430-618 (688)
31 3qfs_A CPR, P450R, NADPH--cyto 99.9 1.2E-25 4.1E-30 215.7 13.4 164 129-299 231-421 (458)
32 3lrx_A Putative hydrogenase; a 99.9 7.9E-26 2.7E-30 187.8 3.7 133 166-321 1-138 (158)
33 3qe2_A CPR, P450R, NADPH--cyto 99.9 1.1E-24 3.6E-29 217.2 11.8 163 130-299 392-581 (618)
34 2bpo_A CPR, P450R, NADPH-cytoc 99.9 1.1E-25 3.8E-30 226.5 4.6 164 130-299 427-646 (682)
35 3lyu_A Putative hydrogenase; t 99.9 1.8E-24 6.3E-29 176.3 4.9 128 172-322 3-134 (142)
36 3a1f_A Cytochrome B-245 heavy 99.9 7.7E-24 2.6E-28 179.7 8.5 137 172-321 1-172 (186)
37 3s2u_A UDP-N-acetylglucosamine 77.5 2.6 8.7E-05 38.4 5.0 33 188-223 2-36 (365)
38 2f23_A Anti-cleavage anti-GREA 49.4 7.7 0.00026 30.8 2.0 65 107-183 82-149 (156)
39 2l82_A Designed protein OR32; 43.3 75 0.0026 23.4 6.3 56 203-261 15-91 (162)
40 2brj_A Arabidopsis thaliana ge 42.9 13 0.00045 29.9 2.4 48 147-200 70-121 (188)
41 2p4v_A Transcription elongatio 41.4 20 0.00069 28.5 3.3 64 108-183 85-148 (158)
42 2pn0_A Prokaryotic transcripti 40.1 22 0.00075 27.6 3.3 64 108-182 57-121 (141)
43 3bmb_A Regulator of nucleoside 31.9 23 0.00077 27.3 2.1 64 108-182 54-118 (136)
44 3hbm_A UDP-sugar hydrolase; PS 30.9 73 0.0025 27.6 5.6 58 188-253 157-215 (282)
45 1grj_A GREA protein; transcrip 29.8 19 0.00066 28.5 1.4 65 107-182 85-149 (158)
46 2q7x_A UPF0052 protein SP_1565 26.0 48 0.0016 29.7 3.5 22 189-210 5-26 (326)
47 2p0y_A Hypothetical protein LP 23.4 47 0.0016 29.9 2.9 24 187-210 9-32 (341)
48 3zth_A STU0660; DNA binding, c 22.8 3.3E+02 0.011 24.2 8.0 60 194-257 175-241 (350)
49 3stb_C RNA-editing complex pro 21.2 93 0.0032 24.3 3.8 50 149-199 88-143 (148)
50 1ddg_A Sulfite reductase (NADP 20.5 2.1E+02 0.0071 25.8 6.8 44 76-120 9-57 (374)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=5.5e-48 Score=343.66 Aligned_cols=240 Identities=45% Similarity=0.845 Sum_probs=217.8
Q ss_pred CccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEE
Q 020296 70 KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD 148 (328)
Q Consensus 70 ~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~ 148 (328)
+..+++..|++++|++++.+++++.+|+|+.+. .....+.||||+.++++.. +....|+|||+|.+.+.+.++
T Consensus 3 ~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~------g~~~~R~ysi~s~~~~~~~~~ 76 (243)
T 2eix_A 3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVD------GKEIYRPYTPVSSDDEKGYFD 76 (243)
T ss_dssp CCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTTCCSEEE
T ss_pred cccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeC------CCEEEeeeeecCCCCCCCEEE
Confidence 467889999999999999999999999999886 4467899999999999854 556899999999988789999
Q ss_pred EEEEEeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296 149 LLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS 228 (328)
Q Consensus 149 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~ 228 (328)
|+||.+++|.+|+||+++++||+|.|.||+|+|.++.+..++++||||||||||+++|++++..+++...+++|+|++|+
T Consensus 77 l~vk~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~ 156 (243)
T 2eix_A 77 LIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVN 156 (243)
T ss_dssp EEEECCTTCHHHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEE
T ss_pred EEEEEcCCCCcchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCC
Confidence 99999999999999999999999999999999988776678999999999999999999999876444579999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296 229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQ 308 (328)
Q Consensus 229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~q 308 (328)
.+|+++.+||++|+++++++++++++++++++|.+..|+++++.+++.++.+..+..||+|||++|+++++
T Consensus 157 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m~~~v~--------- 227 (243)
T 2eix_A 157 EDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMMNKAMQ--------- 227 (243)
T ss_dssp GGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHHHHHHH---------
T ss_pred HHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHHHHHHH---------
Confidence 99999999999999999999999999988778889999999878887776654567899999999999998
Q ss_pred chHHHHHhhcCCCCCCeEeC
Q 020296 309 GELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 309 g~~~~~L~~~G~~~~~I~~f 328 (328)
+.|+++|+++++||.|
T Consensus 228 ----~~l~~~G~~~~~i~~f 243 (243)
T 2eix_A 228 ----GHLETLGYTPEQWFIF 243 (243)
T ss_dssp ----HHHHHHTCCGGGEEEC
T ss_pred ----HHHHHcCCCHHHEEeC
Confidence 9999999999999998
No 2
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=2.3e-46 Score=339.25 Aligned_cols=243 Identities=42% Similarity=0.731 Sum_probs=215.2
Q ss_pred CCCCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296 67 TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG 145 (328)
Q Consensus 67 ~~~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~ 145 (328)
+..+..+++..|..++|++++.+++++..|+|+.+. .....+.||||+.++++.. +....|+|||++.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~~~~~~ 78 (275)
T 1umk_A 5 TPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARID------GNLVVRPYTPISSDDDKG 78 (275)
T ss_dssp CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEET------TEEEEEEECCSSCTTCCS
T ss_pred CCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeC------CcEEEeccccCCccCCCC
Confidence 345577899999999999999999999999999886 3457899999999998765 567899999999988789
Q ss_pred eEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccC--------C--------CCCceEEEEecCccH
Q 020296 146 HFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS--------P--------NMKKHIGMIAGGTGI 200 (328)
Q Consensus 146 ~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~--------~--------~~~~~ivlIAgGtGI 200 (328)
.++|+||.+ ++|.+|+||+++++||+|.|+||+|.|.+. + ...++++||||||||
T Consensus 79 ~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGI 158 (275)
T 1umk_A 79 FVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGI 158 (275)
T ss_dssp EEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGH
T ss_pred eEEEEEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccH
Confidence 999999998 789999999999999999999999997542 1 135799999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC
Q 020296 201 TPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS 279 (328)
Q Consensus 201 tP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~ 279 (328)
||+++|++++..++++..+++|+|++|+.+|+++.+||++|++++++ ++++++++++...|.+..|+++++++++.++.
T Consensus 159 aP~~~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~ 238 (275)
T 1umk_A 159 TPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPP 238 (275)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCC
T ss_pred hHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCC
Confidence 99999999998764455899999999999999999999999999985 99999999888889999999998778777765
Q ss_pred CCCCcEEEEECChhhHH-hhhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296 280 PSDDALILVCGPPGMMK-HVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328 (328)
Q Consensus 280 ~~~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f 328 (328)
..++..||+|||++|++ +++ ..|+++|+++++||.|
T Consensus 239 ~~~~~~vyvCGp~~m~~~~v~-------------~~L~~~G~~~~~I~~f 275 (275)
T 1umk_A 239 PEEEPLVLMCGPPPMIQYACL-------------PNLDHVGHPTERCFVF 275 (275)
T ss_dssp GGGCCEEEEESCHHHHHHTTH-------------HHHHHHTCCGGGEEEC
T ss_pred CCCCeEEEEECCHHHHHHHHH-------------HHHHHcCCCHHHEEeC
Confidence 43468999999999999 887 8999999999999998
No 3
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=3.7e-43 Score=317.30 Aligned_cols=235 Identities=39% Similarity=0.719 Sum_probs=201.3
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
++..|.+++|++++.+++++.+|+|+.+. .....+.||||+.++++.. +....|+|||++.+.+.+.++|+||
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~~~~~~~~~l~vk 81 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIE------GKLCMRAYTPTSMVDEIGHFDLLVK 81 (270)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTTCCSEEEEEEE
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeC------CcEEEEeeccCCCccCCCEEEEEEE
Confidence 67789999999999999999999999886 4467899999999998765 5668999999999877799999999
Q ss_pred Ee---------CCCccchhhhcCCCCCEEEEEceeec--------cccCC--CCCceEEEEecCccHHHHHHHHHHHHhC
Q 020296 153 VY---------PEGKMSQHFASLKPGDVVEVKGPIEK--------LRYSP--NMKKHIGMIAGGTGITPMLQVIEAILKN 213 (328)
Q Consensus 153 ~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~--------~~~~~--~~~~~ivlIAgGtGItP~~~ll~~l~~~ 213 (328)
.+ ++|.+|+||+++++||+|.|.||+|. |.++. +..++++||||||||||+++|++++..+
T Consensus 82 ~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~ 161 (270)
T 2cnd_A 82 VYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRD 161 (270)
T ss_dssp CCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred EeccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhc
Confidence 86 46999999999999999999999997 44443 2468999999999999999999999875
Q ss_pred -CCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeC---CCCCCCCcccccCHHHHhhcCCCCCCCcEEEE
Q 020296 214 -PDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDN---PTKNWKGGVGYISKDTALKGLPSPSDDALILV 288 (328)
Q Consensus 214 -~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~---~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~v 288 (328)
++...+++|+|++|+.+|+++.+||++|++++++ +++++++++ ++++|.+..|+++++++++.++....+..||+
T Consensus 162 ~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyv 241 (270)
T 2cnd_A 162 QPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALA 241 (270)
T ss_dssp TTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEE
T ss_pred CCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEE
Confidence 2345799999999999999999999999999885 999998877 45678888999998777777665444578999
Q ss_pred ECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 289 CGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 289 CGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
|||++|+++ ++ ..|+++|+++++|+-
T Consensus 242 CGp~~m~~~~~~-------------~~L~~~G~~~~~i~~ 268 (270)
T 2cnd_A 242 CGPPPMIQFAIS-------------PNLEKMKYDMANSFV 268 (270)
T ss_dssp ECCHHHHHTTTH-------------HHHHTTTCCHHHHEE
T ss_pred ECCHHHHHHHHH-------------HHHHHcCCChhhcEE
Confidence 999999997 45 899999999988764
No 4
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=4.3e-43 Score=313.56 Aligned_cols=233 Identities=22% Similarity=0.398 Sum_probs=203.1
Q ss_pred cCCCCCeEEEEEEEEEEecCCeeEEEEEc-C-CC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeE
Q 020296 72 ALNPDKWIGFKLQDTARVSHNSHLFRFSF-D-PS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHF 147 (328)
Q Consensus 72 ~l~~~~~~~~~v~~~~~~s~~~~~~~~~~-p-~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l 147 (328)
.+....+..++|++++.+++++.+|+|+. + .. ....+.||||+.++++. ....|+|||++.+.+.+.+
T Consensus 4 ~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--------~~~~R~ySi~s~~~~~~~l 75 (250)
T 1tvc_A 4 SFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--------TDVSRSYSPANLPNPEGRL 75 (250)
T ss_dssp CSCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--------CSSSEEECCBCCSSSSCCE
T ss_pred ecCCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--------CccccccccCCCCCCCCeE
Confidence 34556778999999999999999999998 7 53 25789999999998753 2478999999998877999
Q ss_pred EEEEEEeCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEee
Q 020296 148 DLLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGN 226 (328)
Q Consensus 148 ~l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~ 226 (328)
+|+||.+++|.+|+||+ ++++||+|.|.||+|+|.+.++..++++||||||||||+++|++++..+. +..+++|+|++
T Consensus 76 ~i~vk~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~ 154 (250)
T 1tvc_A 76 EFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGV 154 (250)
T ss_dssp EEEECCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEEC
T ss_pred EEEEEECCCCCchHHHHhcCCCCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEe
Confidence 99999999999999997 89999999999999999887665689999999999999999999998753 34789999999
Q ss_pred CCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296 227 ISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY 306 (328)
Q Consensus 227 r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~ 306 (328)
|+.+|+++.+||++|.++++++++++++++++++|.+..|++++.+. +.+++...+..||+|||++|+++++
T Consensus 155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~-~~~~~~~~~~~vyvCGp~~m~~~v~------- 226 (250)
T 1tvc_A 155 NTEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALR-EDLESSDANPDIYLCGPPGMIDAAC------- 226 (250)
T ss_dssp SSSTTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHH-HHHHHSSSSSEEEEESSHHHHHHHH-------
T ss_pred CCHHHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHH-hhhhcccCCcEEEEeCCHHHHHHHH-------
Confidence 99999999999999998899999999998877788899999986544 3333312357899999999999998
Q ss_pred CcchHHHHHhhcCCCCCCeEe
Q 020296 307 SQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 307 ~qg~~~~~L~~~G~~~~~I~~ 327 (328)
..|+++|+++++||.
T Consensus 227 ------~~l~~~G~~~~~i~~ 241 (250)
T 1tvc_A 227 ------ELVRSRGIPGEQVFF 241 (250)
T ss_dssp ------HHHHHHCCCCSEEEE
T ss_pred ------HHHHHcCCCHHHEEE
Confidence 999999999999984
No 5
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.2e-41 Score=310.53 Aligned_cols=240 Identities=23% Similarity=0.392 Sum_probs=201.5
Q ss_pred CCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC----CC-------------------CCCc
Q 020296 73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD----AE-------------------GNTK 129 (328)
Q Consensus 73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~----~~-------------------~~~~ 129 (328)
+.+ .+..++|++++.+++++++|+|+.++.....+.||||+.++++.... .+ ..+.
T Consensus 5 ~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 83 (290)
T 2r6h_A 5 FGV-KEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEE 83 (290)
T ss_dssp -CC-CEEEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECS
T ss_pred ccc-eEEEEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCC
Confidence 444 45579999999999999999999886445679999999999874200 00 0134
Q ss_pred cccccccCCcCCCCCCeEEEEEEE---------------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEE
Q 020296 130 YVVRPYTPISDTEAKGHFDLLIKV---------------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMI 194 (328)
Q Consensus 130 ~~~RpYTi~s~~~~~~~l~l~Vk~---------------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlI 194 (328)
...|+|||++.+.+.+.++|+||. +++|.+|+||+++++||+|.|.||+|.|.++ +..++++||
T Consensus 84 ~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-~~~~~~vli 162 (290)
T 2r6h_A 84 ETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ-DTDAEMLYI 162 (290)
T ss_dssp CEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC-SSSCEEEEE
T ss_pred CcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC-CCCCeEEEE
Confidence 578999999999878999999997 4679999999999999999999999998875 457899999
Q ss_pred ecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHH
Q 020296 195 AGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDT 272 (328)
Q Consensus 195 AgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~ 272 (328)
||||||||+++|+++++.......+++|+|++|+.+|+++.+||+++.+++++++++++++++ ++.|.+..|++++.+
T Consensus 163 agGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~~ 242 (290)
T 2r6h_A 163 GGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVI 242 (290)
T ss_dssp EEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCBSCHHHHH
T ss_pred ECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCeeEecCHHH
Confidence 999999999999999887644457899999999999999999999999989999999999875 356888899998777
Q ss_pred HhhcCCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 273 ALKGLPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 273 l~~~~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+++.+... ..+..||+|||++|+++++ +.|+++|+++++||.
T Consensus 243 ~~~~l~~~~~~~~~~vyvCGp~~m~~~v~-------------~~l~~~G~~~~~i~~ 286 (290)
T 2r6h_A 243 YDNYLKDHDAPEDIEYYMCGPGPMANAVK-------------GMLENLGVPRNMLFF 286 (290)
T ss_dssp HHHTTTTCSCGGGEEEEEECCHHHHHHHH-------------HHHHHHTCCGGGEEE
T ss_pred HHhHHhhccCcCCcEEEEECCHHHHHHHH-------------HHHHHcCCCHHHEEe
Confidence 66655431 2357899999999999998 999999999999984
No 6
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=4.9e-42 Score=303.18 Aligned_cols=222 Identities=17% Similarity=0.285 Sum_probs=191.0
Q ss_pred EEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc
Q 020296 79 IGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK 158 (328)
Q Consensus 79 ~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~ 158 (328)
..++|++++.+++++.+|+|+.+. ...+.||||+.++++.. ..|+|||++.+.+.+.++|+||.+++|.
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGq~v~l~~~~~---------~~R~ySi~s~~~~~~~l~l~i~~~~~G~ 71 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDA--AFSFRAGQYLMVVMDER---------DKRPFSMASTPDEKGFIELHIGASEINL 71 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESS--CCCCCTTCEEEEESSSS---------CEEEEECCSCTTSTTCEEEEEC------
T ss_pred eEEEEEEEEecCCCEEEEEEecCC--CCCcCCCCEEEEECCCC---------ceeeeecCCCCCCCCcEEEEEEEccCCc
Confidence 578999999999999999999874 45899999999998642 7899999999987789999999998888
Q ss_pred cchh-hhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHH
Q 020296 159 MSQH-FASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK 237 (328)
Q Consensus 159 ~S~~-L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~e 237 (328)
+|++ +.++++||+|.|.||+|+|.+.++..++++||||||||||+++|++++..+. +..+++|+|++|+.+|+++.+|
T Consensus 72 ~s~~~~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~e 150 (232)
T 1qfj_A 72 YAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCE 150 (232)
T ss_dssp CCHHHHHHHHHHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHH
T ss_pred hhHHHHHhCCCCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhhHHH
Confidence 8886 4589999999999999999887666789999999999999999999998753 3478999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH-h
Q 020296 238 LDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL-K 316 (328)
Q Consensus 238 l~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L-~ 316 (328)
|++++++++++++++++++++++|.+..|++++.+++.. .+. .+..||+|||++|+++++ +.| +
T Consensus 151 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~-~~~-~~~~vyvCGp~~m~~~v~-------------~~l~~ 215 (232)
T 1qfj_A 151 LEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDH-GTL-AEHDIYIAGRFEMAKIAR-------------DLFCS 215 (232)
T ss_dssp HHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHHC-SCC-TTCEEEEESCHHHHHHHH-------------HHHHH
T ss_pred HHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHhc-CCc-cccEEEEECCHHHHHHHH-------------HHHHH
Confidence 999999999999999999888889999999997666553 332 358899999999999998 888 9
Q ss_pred hcCCCCCCeEe
Q 020296 317 DLGYTEQMVYK 327 (328)
Q Consensus 317 ~~G~~~~~I~~ 327 (328)
++|+++++||.
T Consensus 216 ~~g~~~~~i~~ 226 (232)
T 1qfj_A 216 ERNAREDRLFG 226 (232)
T ss_dssp HSCCCGGGEEC
T ss_pred HcCCCHHHEEE
Confidence 99999999984
No 7
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.4e-41 Score=300.74 Aligned_cols=225 Identities=20% Similarity=0.242 Sum_probs=195.3
Q ss_pred CCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296 76 DKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154 (328)
Q Consensus 76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~ 154 (328)
+.|++++|++++.+++++.+|+|+.++ .....+.||||+.++++... ......|+|||++.+.+ +.++|+||.+
T Consensus 1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~----~~~~~~R~ySi~s~~~~-~~~~i~vk~~ 75 (243)
T 4eh1_A 1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEG----SDYREIRQYSLSHASNG-REYRISVKRE 75 (243)
T ss_dssp CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSS----CSSCEEEEEEBCSCCCS-SCEEEEEECT
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCC----CccccceeeEeccCCCC-CeEEEEEEEe
Confidence 368999999999999999999999886 34578999999999998651 11225799999998864 8899999999
Q ss_pred -----CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296 155 -----PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS 228 (328)
Q Consensus 155 -----~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~ 228 (328)
++|.+|+||+ ++++||+|.|.||+|.|.++ +..++++||||||||||+++|++++..+... . ++|+|++|+
T Consensus 76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~~-~-v~l~~~~r~ 152 (243)
T 4eh1_A 76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNKS-G-VTYLYACNS 152 (243)
T ss_dssp TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC-S-EEEEEEESS
T ss_pred ecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCCC-e-EEEEEEeCC
Confidence 8899999998 69999999999999999877 5679999999999999999999999986432 3 999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296 229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQ 308 (328)
Q Consensus 229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~q 308 (328)
.+|+++.+||++|.+++ +++++++++++...|. ..|+++.+.+ .++. .+..||+|||++|+++++
T Consensus 153 ~~~~~~~~el~~l~~~~-~~~~~~~~s~~~~~~~-~~g~~~~~~~--~~~~--~~~~vyvCGp~~m~~~v~--------- 217 (243)
T 4eh1_A 153 AKEHTFAQETAQLIAQQ-GWMQQVWYRDESADDV-LQGEMQLAEL--ILPI--EDGDFYLCGPIGFMQYVV--------- 217 (243)
T ss_dssp GGGCTTHHHHHHHHHHH-TCEEEEEESSCCCTTC-EESSCCCTTS--CCCT--TTCEEEEEECHHHHHHHH---------
T ss_pred hhhhhHHHHHHHHHHhC-CeEEEEEEccCCCccc-ccCCccHHHe--eccC--CCcEEEEECCHHHHHHHH---------
Confidence 99999999999999887 8999999988766554 7789987655 3332 468999999999999998
Q ss_pred chHHHHHhhcCCCCCCeEe
Q 020296 309 GELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 309 g~~~~~L~~~G~~~~~I~~ 327 (328)
+.|+++|+++++||.
T Consensus 218 ----~~l~~~g~~~~~i~~ 232 (243)
T 4eh1_A 218 ----KQLLALGVDKARIHY 232 (243)
T ss_dssp ----HHHHHHTCCGGGEEE
T ss_pred ----HHHHHcCCCHHHEEE
Confidence 999999999999984
No 8
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=6.9e-41 Score=318.55 Aligned_cols=233 Identities=18% Similarity=0.246 Sum_probs=200.9
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
++..|++++|++++.+++++..|+|+.++ .....+.||||+.++++.. +......|+|||++.|. ++.++|.||
T Consensus 148 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~----~~~~~~~R~YSi~s~p~-~~~~~i~Vk 222 (396)
T 1gvh_A 148 GWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPE----GFPHQEIRQYSLTRKPD-GKGYRIAVK 222 (396)
T ss_dssp CCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCT----TCSSCEEEEEECCSCCC-SSCEEEEEE
T ss_pred CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCC----CCccceeecceeccCCC-CCeEEEEEE
Confidence 46789999999999999999999999876 3456899999999999743 11235789999999986 589999999
Q ss_pred EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296 153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD 231 (328)
Q Consensus 153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d 231 (328)
.+++|.+|+||++ +++||+|.++||+|.|.++.+..++++|||||||||||++|++++.... +.++++|+|++|+.++
T Consensus 223 ~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~ 301 (396)
T 1gvh_A 223 REEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDV 301 (396)
T ss_dssp CCTTCHHHHHHHHTCCTTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTT
T ss_pred EcCCCcchHHHHhcCCCCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC-CCCcEEEEEEeCCHHH
Confidence 9999999999996 9999999999999999887556789999999999999999999998753 3478999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeCCCCCC-----CCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296 232 ILLKQKLDILAASHPNLKVFYTVDNPTKNW-----KGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY 306 (328)
Q Consensus 232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~~~-----~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~ 306 (328)
+++.+||++|++++++++++++++++...| .+..|+++.+.+++....+ +..||+|||++||++++
T Consensus 302 ~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~--~~~vyvCGp~~m~~~v~------- 372 (396)
T 1gvh_A 302 HAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDP--TMQFYLCGPVGFMQFTA------- 372 (396)
T ss_dssp CCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCCCCT--TCEEEEESCHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhhccCCC--CCEEEEeCCHHHHHHHH-------
Confidence 999999999999999999999988865433 4567899876665532222 58899999999999998
Q ss_pred CcchHHHHHhhcCCCCCCeEe
Q 020296 307 SQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 307 ~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+.|+++|+++++||.
T Consensus 373 ------~~L~~~Gv~~~~i~~ 387 (396)
T 1gvh_A 373 ------KQLVDLGVKQENIHY 387 (396)
T ss_dssp ------HHHHHTTCCGGGEEE
T ss_pred ------HHHHHcCCCHHHEEE
Confidence 999999999999984
No 9
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=1.1e-40 Score=317.94 Aligned_cols=232 Identities=20% Similarity=0.291 Sum_probs=200.2
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
++..|++++|++++.+++++..|+|+.++ .....+.||||+.++++.++ ......|+|||++.|. .+.++|.||
T Consensus 150 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~YSi~s~p~-~~~~~i~Vk 224 (403)
T 1cqx_A 150 GWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPA----LGLQQIRQYSLSDMPN-GRTYRISVK 224 (403)
T ss_dssp CCSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETT----TTEEEEEEEECCSCCC-SSCEEEEEE
T ss_pred CCCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCC----CCcceeecceecCCCC-CCeEEEEEE
Confidence 46789999999999999999999999876 34568999999999998530 1225789999999986 589999999
Q ss_pred EeC-----CCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEee
Q 020296 153 VYP-----EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGN 226 (328)
Q Consensus 153 ~~~-----~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~ 226 (328)
.++ +|.+|+||+ ++++||+|.|.||+|.|.++.+..++++|||||||||||++|++++.. .+.++++|+|++
T Consensus 225 ~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~~~v~l~~~~ 302 (403)
T 1cqx_A 225 REGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APPRQVVFVHGA 302 (403)
T ss_dssp CCCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSCCCEEEEEEE
T ss_pred ECCCCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCCCcEEEEEEe
Confidence 986 699999999 699999999999999998865567899999999999999999999987 234789999999
Q ss_pred CCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCC-----CCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcc
Q 020296 227 ISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNW-----KGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGE 301 (328)
Q Consensus 227 r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~-----~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~ 301 (328)
|+.+++++.+||++|++++++++++++++++...| .+..|+++.+.+.+.+..+ +..||+|||++||++++
T Consensus 303 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~--~~~vyvCGp~~m~~~v~-- 378 (403)
T 1cqx_A 303 RNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLP--DADYYICGPIPFMRMQH-- 378 (403)
T ss_dssp SCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHCCT--TCEEEEESSHHHHHHHH--
T ss_pred CChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhccCCC--CCEEEEeCCHHHHHHHH--
Confidence 99999999999999999999999999988876554 3567899876666532122 58899999999999998
Q ss_pred cccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 302 KAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 302 ~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+.|+++|+++++||.
T Consensus 379 -----------~~L~~~Gv~~~~i~~ 393 (403)
T 1cqx_A 379 -----------DALKNLGIHEARIHY 393 (403)
T ss_dssp -----------HHHHHTTCCGGGEEE
T ss_pred -----------HHHHHcCCCHHHeEE
Confidence 999999999999985
No 10
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=2.4e-40 Score=295.26 Aligned_cols=225 Identities=19% Similarity=0.275 Sum_probs=189.5
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
.|.+++|++++.+++++.+|+|+ ++ ...+.||||+.++++.. +....|+|||++.+.+ +.++|+||.+++
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~--~~~~~pGq~v~l~~~~~------g~~~~R~ySi~s~~~~-~~l~~~v~~~~~ 72 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-AP--VLPFTAGQFTKLGLEID------GERVQRAYSYVNSPDN-PDLEFYLVTVPD 72 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CC--CCCCCTTCEEEEEECC---------CEEEEEECCSCTTC-SSEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CC--CCCcCCCCcEEEEccCC------CCeeeeeecccCCCCC-CcEEEEEEEeCC
Confidence 58899999999999999999997 42 36899999999999864 4568999999999875 899999999999
Q ss_pred CccchhhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296 157 GKMSQHFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL 234 (328)
Q Consensus 157 G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~ 234 (328)
|.+|+||+++++||+|.|. ||+|.|.++.+ ..++++||||||||||+++|++++.... +..+++|+|++|+.+|+++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 151 (248)
T 1fdr_A 73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSY 151 (248)
T ss_dssp CSSHHHHHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTT
T ss_pred CchhhHHHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC-CCCcEEEEEEcCCHHHhhH
Confidence 9999999999999999999 99999887654 3689999999999999999999987542 3478999999999999999
Q ss_pred HHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC------CCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296 235 KQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL------PSPSDDALILVCGPPGMMKHVSGEKAKDYS 307 (328)
Q Consensus 235 ~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~------~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~ 307 (328)
.+||++++++++ ++++++++++++. +.+..|++++.+.+..+ .....+..||+|||++|+++++
T Consensus 152 ~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~-------- 222 (248)
T 1fdr_A 152 LPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQ-------- 222 (248)
T ss_dssp HHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHH--------
T ss_pred HHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHH--------
Confidence 999999998886 5999998887643 33467898865443221 1122468999999999999998
Q ss_pred cchHHHHH-hhcCCCCCCeE
Q 020296 308 QGELSGIL-KDLGYTEQMVY 326 (328)
Q Consensus 308 qg~~~~~L-~~~G~~~~~I~ 326 (328)
+.| +++|+++++|+
T Consensus 223 -----~~l~~~~G~~~~~i~ 237 (248)
T 1fdr_A 223 -----QLLKETRQMTKHLRR 237 (248)
T ss_dssp -----HHHHHHHCCCBCBTT
T ss_pred -----HHHHHHcCCChHHcC
Confidence 899 99999999865
No 11
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=3.4e-40 Score=307.42 Aligned_cols=225 Identities=21% Similarity=0.342 Sum_probs=197.1
Q ss_pred CCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296 76 DKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154 (328)
Q Consensus 76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~ 154 (328)
..+..++|++++.+++++.+|+|+.+.. ....|.||||+.++++.. ...|+|||++.+. .+.++|+||.+
T Consensus 106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~-~~~l~~~vk~~ 176 (338)
T 1krh_A 106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--------TETRSYSFSSQPG-NRLTGFVVRNV 176 (338)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--------SCEEEEECCSCTT-CSEEEEEEECC
T ss_pred ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCC--------CccccccccCCCC-CCeEEEEEEEc
Confidence 4577899999999999999999998862 357899999999998642 3789999999987 79999999999
Q ss_pred CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296 155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL 233 (328)
Q Consensus 155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~ 233 (328)
++|.+|+||+ ++++||+|.|.||+|+|.++++ .++++||||||||||+++|++++..++ ...+++|+|++|+.+|++
T Consensus 177 ~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~ 254 (338)
T 1krh_A 177 PQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLV 254 (338)
T ss_dssp TTCHHHHHHHTTCCTTCEEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCC
T ss_pred CCCCchhhHhhccCCCCEEEEECCccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhh
Confidence 9999999996 8999999999999999987765 489999999999999999999998763 347899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHH
Q 020296 234 LKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSG 313 (328)
Q Consensus 234 ~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~ 313 (328)
+.+||++|+++++++++++++++++..|. ..|++++.+.++.++. .+..||+|||++|+++++ +
T Consensus 255 ~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~~--~~~~vy~CGp~~m~~~v~-------------~ 318 (338)
T 1krh_A 255 ALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYDWLNG--GEVDVYLCGPVPMVEAVR-------------S 318 (338)
T ss_dssp CHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGGGGGG--GCSEEEEEEEHHHHHHHH-------------H
T ss_pred hHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHhhccc--CCcEEEEECCHHHHHHHH-------------H
Confidence 99999999999999999999988776665 6789886544344443 357899999999999998 9
Q ss_pred HHhhcCCCCCCeEe
Q 020296 314 ILKDLGYTEQMVYK 327 (328)
Q Consensus 314 ~L~~~G~~~~~I~~ 327 (328)
.|+++|+++++||.
T Consensus 319 ~l~~~G~~~~~i~~ 332 (338)
T 1krh_A 319 WLDTQGIQPANFLF 332 (338)
T ss_dssp HHHHHTCCCSEEEE
T ss_pred HHHHcCCCHHHEEE
Confidence 99999999999984
No 12
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=2.6e-39 Score=308.03 Aligned_cols=226 Identities=18% Similarity=0.284 Sum_probs=197.4
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCC-----CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-----GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDL 149 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~-----~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l 149 (328)
+..|++++|++++.+++++..|+|+.++.... .+.||||+.++++.++. +......|+|||++.|.+ +.++|
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~~~~R~ySi~s~p~~-~~~~i 222 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQ--ENQYDALRHYSLCSASTK-NGLRF 222 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCST--TCCSCEEEEEEBSCSCCT-TCEEE
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCC--CCccceeeeecccCCCCC-CeEEE
Confidence 78899999999999999999999998863333 89999999999854200 013357899999999864 88999
Q ss_pred EEEEe------CCCccchhhh-cCCCCCEEEEEceeeccccCCC----CCceEEEEecCccHHHHHHHHHHHHhCCCCCC
Q 020296 150 LIKVY------PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPN----MKKHIGMIAGGTGITPMLQVIEAILKNPDDNT 218 (328)
Q Consensus 150 ~Vk~~------~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~----~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~ 218 (328)
.||.+ ++|.+|+||+ ++++||+|.|.||+|.|.++.+ ..++++||||||||||+++|++++..++ ..+
T Consensus 223 ~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~ 301 (399)
T 4g1v_A 223 AVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNR 301 (399)
T ss_dssp EEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTS
T ss_pred EEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCC
Confidence 99994 6899999997 8999999999999999988765 5789999999999999999999998764 347
Q ss_pred eEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhh
Q 020296 219 QVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298 (328)
Q Consensus 219 ~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v 298 (328)
+|+++|++|+.+++++.+||+++.+++++++++++++++. |+++.+.+.+.++. +..||+|||++|++++
T Consensus 302 ~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~~~~~---~~~vyvCGp~~m~~~v 371 (399)
T 4g1v_A 302 PIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKEKSPA---HADVYTCGSLAFMQAM 371 (399)
T ss_dssp CEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHHHSCS---SCEEEEEECHHHHHHH
T ss_pred CEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHhhCCC---CCEEEEECCHHHHHHH
Confidence 8999999999999999999999999999999999987653 78988888777654 5899999999999999
Q ss_pred hcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296 299 SGEKAKDYSQGELSGILKDLGYTEQMVYK 327 (328)
Q Consensus 299 ~g~~~~~~~qg~~~~~L~~~G~~~~~I~~ 327 (328)
+ +.|+++|+++++||.
T Consensus 372 ~-------------~~L~~~Gv~~~~i~~ 387 (399)
T 4g1v_A 372 I-------------GHLKELEHRDDMIHY 387 (399)
T ss_dssp H-------------HHHHHTTCCGGGEEE
T ss_pred H-------------HHHHHcCCCHHHeee
Confidence 8 999999999999985
No 13
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=4.2e-39 Score=291.26 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=188.7
Q ss_pred eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296 78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG 157 (328)
Q Consensus 78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G 157 (328)
+..++|++++.+++++.+|+|+.++ ...+.||||+.++++.. .+....|+|||++.+.+ +.++|+||.+++|
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~-----~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G 87 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRPQ--TLRFRSGEFVMIGLLDD-----NGKPIMRAYSIASPAWD-EELEFYSIKVPDG 87 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCT--TCCCCTTCEEEEEEECT-----TSCEEEEEEECCSCTTC-SEEEEEEECCTTC
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCCC--CCccCCCCEEEEEeccC-----CCCeeeeeeeeccCCCC-CeEEEEEEEccCC
Confidence 4679999999999999999999874 35799999999999843 24568999999999875 8999999999999
Q ss_pred ccchhhhcCCCCCEEEEE-ceeeccccCCCC-CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296 158 KMSQHFASLKPGDVVEVK-GPIEKLRYSPNM-KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK 235 (328)
Q Consensus 158 ~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~-~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~ 235 (328)
.+|+||+++++||+|.+. ||+|.|.++... .++++||||||||||+++|++++.... ...+++|+|++|+.+|++|.
T Consensus 88 ~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~ 166 (272)
T 2bgi_A 88 PLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE-KFDEVIMMHACRTVAELEYG 166 (272)
T ss_dssp TTHHHHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT-SCSEEEEEEEESSSGGGHHH
T ss_pred CchhHHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHH
Confidence 999999999999999999 999998876543 689999999999999999999987642 34789999999999999999
Q ss_pred HHHH-HHHH-----hC--CCeEEEEEEeCCCCCCCCcccccCHHHHhhc------CCCC-CCCcEEEEECChhhHHhhhc
Q 020296 236 QKLD-ILAA-----SH--PNLKVFYTVDNPTKNWKGGVGYISKDTALKG------LPSP-SDDALILVCGPPGMMKHVSG 300 (328)
Q Consensus 236 ~el~-~l~~-----~~--~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~------~~~~-~~~~~v~vCGP~~m~~~v~g 300 (328)
+||+ +|++ ++ ++++++++++++. .+..|++++.+.+.. ++.. .++..||+|||++|+++++
T Consensus 167 ~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~- 242 (272)
T 2bgi_A 167 RQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFNVDVM- 242 (272)
T ss_dssp HHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHHHHHH-
T ss_pred HHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHHHHHH-
Confidence 9999 9987 55 5799998888763 346788886544322 2211 2468999999999999998
Q ss_pred ccccCCCcchHHHHHhhcCCCCCCeE
Q 020296 301 EKAKDYSQGELSGILKDLGYTEQMVY 326 (328)
Q Consensus 301 ~~~~~~~qg~~~~~L~~~G~~~~~I~ 326 (328)
+.|+++|+++++|+
T Consensus 243 ------------~~l~~~G~~~~~i~ 256 (272)
T 2bgi_A 243 ------------KVLESYGLREGANS 256 (272)
T ss_dssp ------------HHHHTTTCCBCBTT
T ss_pred ------------HHHHHcCCChHHcC
Confidence 99999999998764
No 14
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=2e-39 Score=290.91 Aligned_cols=224 Identities=19% Similarity=0.301 Sum_probs=188.8
Q ss_pred CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296 77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE 156 (328)
Q Consensus 77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~ 156 (328)
.|++++|++++.+++++.+|+|+.++ ...+.||||+.++++.. +....|+|||++.+.+ +.++|+||.+++
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGq~v~l~~~~~------g~~~~R~ySi~s~~~~-~~~~~~i~~~~~ 72 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNP--GLRFKTGQFVMIGLEVD------GRPLMRAYSIASPNYE-EHLEFFSIKVPD 72 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCT--TCCCCTTCEEEEEEEET------TEEEEEEEECCSCTTS-SEEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCC--CCccCCCCEEEEEecCC------CCceeeeeEeecCCCC-CeEEEEEEEeCC
Confidence 58899999999999999999999774 35789999999999864 5568999999999875 899999999999
Q ss_pred CccchhhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296 157 GKMSQHFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL 234 (328)
Q Consensus 157 G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~ 234 (328)
|.+|+||+++++||+|.|. ||+|.|.++.. ..++++||||||||||+++|++++.... ...+++|+|++|+.+|+++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 151 (257)
T 2qdx_A 73 GPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE-RYEKVILVHGVRWVSELAY 151 (257)
T ss_dssp CTTHHHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTT
T ss_pred CcchhHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC-CCCeEEEEEEcCCHHHhHh
Confidence 9999999999999999999 99999887653 3689999999999999999999887542 2368999999999999999
Q ss_pred HHHHH-HHHH-----hC--CCeEEEEEEeCCCCCCCCcccccCHHHHhhc------CC-CCCCCcEEEEECChhhHHhhh
Q 020296 235 KQKLD-ILAA-----SH--PNLKVFYTVDNPTKNWKGGVGYISKDTALKG------LP-SPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 235 ~~el~-~l~~-----~~--~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~------~~-~~~~~~~v~vCGP~~m~~~v~ 299 (328)
.+||+ +|++ ++ +++++++++++++ .+..|++++.+.+.. ++ ....+..||+|||++|+++++
T Consensus 152 ~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~ 228 (257)
T 2qdx_A 152 ADFITKVLPEHEYFGDQVKEKLIYYPLVTREP---FRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETS 228 (257)
T ss_dssp HHHHHTTGGGCTTTHHHHHHHEEEEEEESSSC---CSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhchhhhccCCCcEEEEEEecCCC---cccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHHHHH
Confidence 99999 8876 43 4699988888763 245788886544322 22 112468999999999999998
Q ss_pred cccccCCCcchHHHHHhhcCCCCC-------CeE
Q 020296 300 GEKAKDYSQGELSGILKDLGYTEQ-------MVY 326 (328)
Q Consensus 300 g~~~~~~~qg~~~~~L~~~G~~~~-------~I~ 326 (328)
+.|+++|++++ +|+
T Consensus 229 -------------~~l~~~G~~~~~~~~~~~~i~ 249 (257)
T 2qdx_A 229 -------------AVLDSFGLKISPRMGEPGDYL 249 (257)
T ss_dssp -------------HHHHHTTCCBCSSTTSCBSEE
T ss_pred -------------HHHHHcCCChHHhcCCCCcEE
Confidence 99999999999 886
No 15
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.7e-38 Score=292.64 Aligned_cols=223 Identities=22% Similarity=0.322 Sum_probs=184.8
Q ss_pred ccCCCCCeEEEEEEEEEEecCC-----eeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCc-cccccccCCcCCC--
Q 020296 71 IALNPDKWIGFKLQDTARVSHN-----SHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTK-YVVRPYTPISDTE-- 142 (328)
Q Consensus 71 ~~l~~~~~~~~~v~~~~~~s~~-----~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~-~~~RpYTi~s~~~-- 142 (328)
....+.....++|++++.++++ +.+|+|+.+. .+.|.||||+.|+++... ..+. ...|+|||+|.|.
T Consensus 26 ~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~---~~g~~~~~R~ySias~p~~~ 100 (310)
T 3vo2_A 26 NKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG--EIPYREGQSIGIIADGED---KNGKPHKLRLYSIASSALGD 100 (310)
T ss_dssp CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT--CCCCCTTCEEEEECSSBC---TTSCBCCCEEEECCSCTTTT
T ss_pred eeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC--CCcccCCCEEEEECCCcC---CCCCcCcceeeecCCCCccc
Confidence 3456777789999999999998 9999999663 467999999999986531 1132 3689999999986
Q ss_pred --CCCeEEEEEEEeC---------CCccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHH
Q 020296 143 --AKGHFDLLIKVYP---------EGKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAI 210 (328)
Q Consensus 143 --~~~~l~l~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l 210 (328)
+.+.++|+||.++ +|.+|+||+++++||+|.|.||+|.+.+.+ +..++++|||||||||||++|++++
T Consensus 101 ~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~ 180 (310)
T 3vo2_A 101 FGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKM 180 (310)
T ss_dssp TTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHH
Confidence 5689999999873 699999999999999999999999876543 4568999999999999999999999
Q ss_pred HhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----C
Q 020296 211 LKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----P 280 (328)
Q Consensus 211 ~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~ 280 (328)
+....+ ..+++|+|++|+.+|++|.+||++|++++| +|++++++++++.+|.+.+++++.. +.+.... .
T Consensus 181 ~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~-l~~~~~~l~~~l~ 259 (310)
T 3vo2_A 181 FLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTR-MAEYREELWELLK 259 (310)
T ss_dssp HSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHH-HHTTHHHHHHHHT
T ss_pred HHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHH-HHHHHHHHHHhcc
Confidence 865322 268999999999999999999999999998 6999999999888898888888743 3322110 1
Q ss_pred CCCcEEEEECChhhHHhhh
Q 020296 281 SDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 281 ~~~~~v~vCGP~~m~~~v~ 299 (328)
.++..||+|||++|+++++
T Consensus 260 ~~~~~vyvCGp~~M~~~v~ 278 (310)
T 3vo2_A 260 KDNTYVYMCGLKGMEKGID 278 (310)
T ss_dssp STTEEEEEEESTTHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHH
Confidence 2368999999999999997
No 16
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.3e-38 Score=293.43 Aligned_cols=228 Identities=19% Similarity=0.240 Sum_probs=181.8
Q ss_pred CCccCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC
Q 020296 69 PKIALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA 143 (328)
Q Consensus 69 ~~~~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~ 143 (328)
+.....+..+..++|++++.++ +++.+|+|+.+. .+.|.||||+.|+++.......+.....|+|||+|.|.+
T Consensus 19 ~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~ 96 (311)
T 3lo8_A 19 PLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYG 96 (311)
T ss_dssp CCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT--SSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTT
T ss_pred CccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC--CCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcc
Confidence 3445567788899999999999 999999999874 478999999999987631000012347899999999864
Q ss_pred ----CCeEEEEEEEe-------------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEEecCccHHHHH
Q 020296 144 ----KGHFDLLIKVY-------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMIAGGTGITPML 204 (328)
Q Consensus 144 ----~~~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlIAgGtGItP~~ 204 (328)
.+.++|+||.+ ++|.+|+||+++++||+|.|.||+|.|.+.+ +..++++||||||||||++
T Consensus 97 ~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~ 176 (311)
T 3lo8_A 97 DNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFR 176 (311)
T ss_dssp TTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHH
T ss_pred cCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHH
Confidence 48999999987 7899999999999999999999999987655 3578999999999999999
Q ss_pred HHHHHHHhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC--
Q 020296 205 QVIEAILKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL-- 277 (328)
Q Consensus 205 ~ll~~l~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~-- 277 (328)
+|+++++.+..+ ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++..|.+..++++.. +.+..
T Consensus 177 s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~-l~~~~~~ 255 (311)
T 3lo8_A 177 GYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDK-IEEYSDE 255 (311)
T ss_dssp HHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHH-HHHTHHH
T ss_pred HHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHH-HHHHHHH
Confidence 999999865322 258999999999999999999999999998 6999999999888888888888743 33221
Q ss_pred --CCCCCCcEEEEECChhhHHhhh
Q 020296 278 --PSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 278 --~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
.....+..||+|||++|+++++
T Consensus 256 ~~~~~~~~~~vyvCGp~~m~~~v~ 279 (311)
T 3lo8_A 256 IFKLLDGGAHIYFCGLKGMMPGIQ 279 (311)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHH
T ss_pred HHHhhcCCcEEEEECCHHHHHHHH
Confidence 0011358999999999999997
No 17
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=1.1e-39 Score=294.71 Aligned_cols=226 Identities=19% Similarity=0.246 Sum_probs=186.6
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~ 154 (328)
...|++++|++++.+++++.+++|+.+. ...++||||+.++++.. +....|||||++.+. ++.++|+||++
T Consensus 16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~-~~~~~~~v~~~ 86 (271)
T 4fk8_A 16 MSKFDTATVLSVHHWTDTLFSFTCTRDQ--ALRFNNGEFTMVGLEVD------GKPLTRAYSIVSPNY-EEHLEFFSIKV 86 (271)
T ss_dssp --CEEEEEEEEEEEEETTEEEEEECCCT--TCCCCTTCEEEEEEEET------TEEEEEEEECCSCTT-SSSEEEEEECC
T ss_pred cccceeEEEEEEEEcCCCEEEEEEEcCC--CCCcCCCCEEEEEccCC------CceeeeeEeccCCCC-CCcEEEEEEEE
Confidence 4579999999999999999999998774 46899999999999865 566899999999886 47899999999
Q ss_pred CCCccchhhhcCCCCCEEEEE-ceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 155 PEGKMSQHFASLKPGDVVEVK-GPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 155 ~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
++|.+|+||+++++||+|.+. ||+|.|.++. +..++++||||||||||++++++++.... +..+++|+|++|+.+|+
T Consensus 87 ~~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~ 165 (271)
T 4fk8_A 87 QNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE-RFDKVVLTHTCRLKGEL 165 (271)
T ss_dssp TTCTTHHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH-HCSEEEEEECCCSHHHH
T ss_pred CCCchhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC-CCCCEEEEEecCCHHHH
Confidence 999999999999999999999 9999988765 35789999999999999999999987542 23699999999999999
Q ss_pred hhHHHHHHHHHhCC--------CeEEEEEEeCCCCCCCCcccccCHHHHhh----cC--C-CCCCCcEEEEECChhhHHh
Q 020296 233 LLKQKLDILAASHP--------NLKVFYTVDNPTKNWKGGVGYISKDTALK----GL--P-SPSDDALILVCGPPGMMKH 297 (328)
Q Consensus 233 ~~~~el~~l~~~~~--------~~~v~~~~~~~~~~~~g~~g~i~~~~l~~----~~--~-~~~~~~~v~vCGP~~m~~~ 297 (328)
++.+||+++.++++ +++++++++++.. +..|++++.+++. .+ + ...++..||+|||++|+++
T Consensus 166 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~~~ 242 (271)
T 4fk8_A 166 AYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKD 242 (271)
T ss_dssp HHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHHHH
T ss_pred hHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHHHH
Confidence 99999999988877 4777777666543 4568888655442 11 1 1224689999999999999
Q ss_pred hhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296 298 VSGEKAKDYSQGELSGILKDLGYTEQMVY 326 (328)
Q Consensus 298 v~g~~~~~~~qg~~~~~L~~~G~~~~~I~ 326 (328)
++ +.|+++|+++++++
T Consensus 243 v~-------------~~l~~~gv~~~~i~ 258 (271)
T 4fk8_A 243 TT-------------ELLKKAGLVEGKNS 258 (271)
T ss_dssp HH-------------HHHHHTTCCBCBTT
T ss_pred HH-------------HHHHHcCCchhhcC
Confidence 98 99999999998764
No 18
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=1.6e-38 Score=293.32 Aligned_cols=237 Identities=16% Similarity=0.224 Sum_probs=189.2
Q ss_pred CCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-------------------------
Q 020296 74 NPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD------------------------- 123 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~------------------------- 123 (328)
.++.-..++|+++++++ +++..++|..+. .+.|.+||++.+..+....
T Consensus 11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 88 (316)
T 3jqq_A 11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG--LFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNN 88 (316)
T ss_dssp CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT--CCCCCTTCEEEECTTCC---------------------------
T ss_pred cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC--CcceecCcEeEEECCCcccccccccccccccccccccccccccc
Confidence 45555679999999998 889999998763 5899999999998765310
Q ss_pred ---CCCCCccccccccCCcCCCCCCeEEEEEEEe------------CCCccchhhhcCCCCCEEEEEceeeccccCCC--
Q 020296 124 ---AEGNTKYVVRPYTPISDTEAKGHFDLLIKVY------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPN-- 186 (328)
Q Consensus 124 ---~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~-- 186 (328)
...++...+|+|||+|.|.+ +.++|+||.. ++|.+|+||+++++||+|.|+||+|.|.++.+
T Consensus 89 ~~~~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~l~~~~~ 167 (316)
T 3jqq_A 89 IALSHIKKQRCARLYSISSSNNM-ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDAI 167 (316)
T ss_dssp --------CCCCEEEEBCSCTTS-SSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCCCCTTHH
T ss_pred cccccCCCcccceeeecccCCCC-CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceEcCCccc
Confidence 01124568999999999875 7999999975 67999999999999999999999999988765
Q ss_pred -CCceEEEEecCccHHHHHHHHHHHHhCCC---------CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEe
Q 020296 187 -MKKHIGMIAGGTGITPMLQVIEAILKNPD---------DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVD 255 (328)
Q Consensus 187 -~~~~ivlIAgGtGItP~~~ll~~l~~~~~---------~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~ 255 (328)
..++++|||||||||||++|++++..... ...+++|+|++|+.++++|.+||++|.++++ +++++++++
T Consensus 168 ~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~~~~~~s 247 (316)
T 3jqq_A 168 QKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFS 247 (316)
T ss_dssp HHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEEG
T ss_pred CCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEEEEEEEC
Confidence 36899999999999999999999987531 2478999999999999999999999999998 599999998
Q ss_pred CCCCCCCCcccccCHHHHhhc--CCC--CCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC----CCCCeEe
Q 020296 256 NPTKNWKGGVGYISKDTALKG--LPS--PSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY----TEQMVYK 327 (328)
Q Consensus 256 ~~~~~~~g~~g~i~~~~l~~~--~~~--~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~----~~~~I~~ 327 (328)
++ .+|.+..|+++..+.+.. +.+ ...+..||+|||++|+++++ +.|+++|+ ++++||.
T Consensus 248 ~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~-------------~~l~~~G~~~~v~~~rih~ 313 (316)
T 3jqq_A 248 YK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVM-------------DILKSHDQFDEKKKKRVHV 313 (316)
T ss_dssp GG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHH-------------HHHHC----CHHHHTTEEE
T ss_pred CC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHH-------------HHHHHcCCCcccccccEEE
Confidence 87 568888999986544321 000 01358999999999999998 99999994 8888874
No 19
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=3.1e-37 Score=284.65 Aligned_cols=223 Identities=20% Similarity=0.280 Sum_probs=182.6
Q ss_pred ccCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCC--
Q 020296 71 IALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTE-- 142 (328)
Q Consensus 71 ~~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~-- 142 (328)
..+.+..+..++|++++.+++ ++.+++|+.+.. ..|.||||+.++++.. +..+ ....|+|||++.+.
T Consensus 30 ~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySi~s~p~~~ 104 (314)
T 1fnb_A 30 NKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE--IPYREGQSVGVIPDGE---DKNGKPHKLRLYSIASSALGD 104 (314)
T ss_dssp CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC--CCCCTTCEEEEECSSB---CTTSSBCCCEEEECCSCSSCT
T ss_pred cccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--CCcCCCCEEEEecCCC---CcCCCcCCceeEecCCCCccc
Confidence 445567778899999999998 899999998752 6799999999997652 0012 34789999999885
Q ss_pred --CCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHHHH
Q 020296 143 --AKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIEAI 210 (328)
Q Consensus 143 --~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~~l 210 (328)
+.+.++|+||.+ ++|.+|+||+++++||+|.|.||+|.|.. +.+..++++||||||||||+++|++++
T Consensus 105 ~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~ 184 (314)
T 1fnb_A 105 FGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKM 184 (314)
T ss_dssp TSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 358999999975 57999999999999999999999998754 333468999999999999999999999
Q ss_pred HhCCC----CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC----CCC-
Q 020296 211 LKNPD----DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL----PSP- 280 (328)
Q Consensus 211 ~~~~~----~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~----~~~- 280 (328)
+.... ...+++|+|++|+.+|++|.+||+++.++++ ++++++++++++++|.+..|+++. .+.+.+ ...
T Consensus 185 ~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~-~l~~~~~~~~~~~~ 263 (314)
T 1fnb_A 185 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQT-RMAQYAVELWEMLK 263 (314)
T ss_dssp HTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH-HHHTTHHHHHHHTT
T ss_pred HHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechH-HHHHhHHHHHHHHh
Confidence 86532 1368999999999999999999999999988 599999999887888888888874 333211 001
Q ss_pred CCCcEEEEECChhhHHhhh
Q 020296 281 SDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 281 ~~~~~v~vCGP~~m~~~v~ 299 (328)
.++..||+|||++|+++++
T Consensus 264 ~~~~~vyvCGp~~m~~~v~ 282 (314)
T 1fnb_A 264 KDNTYVYMCGLKGMEKGID 282 (314)
T ss_dssp STTEEEEEEECTTHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHH
Confidence 1358899999999999997
No 20
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=1.3e-37 Score=280.02 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=177.4
Q ss_pred EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296 80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM 159 (328)
Q Consensus 80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~ 159 (328)
+++|++++.+++++.+|+|+.+. ....+.||||+.++++.. +....|+|||++.+.+.+.++|+||.++.|.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~-~~~~~~pGQ~v~l~~~~~------~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~ 79 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTL-VDEMDLPGQFLHLAVPNG------AMLLRRPISISSWDKRAKTCTILYRIGDETTG 79 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGG-GGGCCSTTCEEEECCSCT------TCCSCEEEECCEEETTTTEEEEEEECCCTTSH
T ss_pred ceEEEEEEEecCCEEEEEEEcCc-ccccCCCCceEEEEcCCC------CceeeEEEEeeeecCCCCEEEEEEEEecCCch
Confidence 79999999999999999999874 245789999999998753 35689999999998777999999999888999
Q ss_pred chhhhcCCCCCEEEEEceeec-cccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHH
Q 020296 160 SQHFASLKPGDVVEVKGPIEK-LRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK 237 (328)
Q Consensus 160 S~~L~~l~~Gd~v~v~GP~G~-~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~e 237 (328)
|+||+++++||+|.+.||+|+ |.++.+ ..++++||||||||||+++|++++..+. .+++|+|++|+.+|+++.+|
T Consensus 80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~~~e 156 (262)
T 1ep3_B 80 TYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENE 156 (262)
T ss_dssp HHHHHTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHH
T ss_pred HHHHhcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHH
Confidence 999999999999999999999 887654 4689999999999999999999998752 68999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhh
Q 020296 238 LDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKD 317 (328)
Q Consensus 238 l~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~ 317 (328)
|++|+.. +++++. ++.|.+..|++++ .+++.+++ ...||+|||++|+++++ + |++
T Consensus 157 l~~l~~~----~~~~~~---~~~~~~~~g~v~~-~l~~~~~~---~~~vyvCGp~~m~~~v~-------------~-l~~ 211 (262)
T 1ep3_B 157 FSNLKNV----TLKIAT---DDGSYGTKGHVGM-LMNEIDFE---VDALYTCGAPAMLKAVA-------------K-KYD 211 (262)
T ss_dssp HHTSTTE----EEEEEE---TTCSSSEESCHHH-HHHHCCSC---CSEEEEESCHHHHHHHH-------------H-HTT
T ss_pred HhhhccC----cEEEEE---CCCCCcceeehHH-HHHhhccC---CCEEEEECCHHHHHHHH-------------H-HHh
Confidence 9987532 444432 2346677899985 67665543 47999999999999998 8 999
Q ss_pred cCCC
Q 020296 318 LGYT 321 (328)
Q Consensus 318 ~G~~ 321 (328)
+|++
T Consensus 212 ~gv~ 215 (262)
T 1ep3_B 212 QLER 215 (262)
T ss_dssp TCSS
T ss_pred CCCC
Confidence 9998
No 21
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=5e-37 Score=292.15 Aligned_cols=222 Identities=21% Similarity=0.319 Sum_probs=183.2
Q ss_pred ccCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCCC-
Q 020296 71 IALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTEA- 143 (328)
Q Consensus 71 ~~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~~- 143 (328)
..+.+..+..++|++++.+++ ++..|+|+.+.. ...|.||||+.|+++.. +..+ ....|+|||++.+.+
T Consensus 115 ~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySIas~p~~~ 190 (402)
T 2b5o_A 115 NIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG-DLRYLEGQSIGIIPPGE---DKNGKPHKLRLYSIASTRHGD 190 (402)
T ss_dssp CSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS-CCCCCTTCEEEEECSSE---ETTTEECCCEEEEBCSCTTTT
T ss_pred ccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC-CCCcCCCCEEEEEecCC---CcCCCccCceeeeccCCCccc
Confidence 345566677899999999999 999999998742 47899999999997642 0012 247899999998863
Q ss_pred ---CCeEEEEEEEe----------CCCccchhhhcCCCC-CEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHH
Q 020296 144 ---KGHFDLLIKVY----------PEGKMSQHFASLKPG-DVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIE 208 (328)
Q Consensus 144 ---~~~l~l~Vk~~----------~~G~~S~~L~~l~~G-d~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~ 208 (328)
.+.++|+||.. +.|.+|+||+++++| |+|.|.||+|+|.. +.+..++++||||||||||+++|++
T Consensus 191 ~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~ 270 (402)
T 2b5o_A 191 MEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLW 270 (402)
T ss_dssp TTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHH
T ss_pred cCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHH
Confidence 68999999983 469999999999999 99999999998754 4345689999999999999999999
Q ss_pred HHHhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhc-------
Q 020296 209 AILKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKG------- 276 (328)
Q Consensus 209 ~l~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~------- 276 (328)
+++....+ ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++++|.+..++++.. +.+.
T Consensus 271 ~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~-l~~~~~~l~~~ 349 (402)
T 2b5o_A 271 RMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSR-VSEYADELFEM 349 (402)
T ss_dssp HHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHH-HHHTHHHHHHH
T ss_pred HHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHH-HHHhHHHHHHH
Confidence 99876421 368999999999999999999999999998 6999999998877888888888743 3321
Q ss_pred CCCCCCCcEEEEECChhhHHhhh
Q 020296 277 LPSPSDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 277 ~~~~~~~~~v~vCGP~~m~~~v~ 299 (328)
+. ..+..||+|||++|+++++
T Consensus 350 l~--~~~~~vyvCGP~~M~~~v~ 370 (402)
T 2b5o_A 350 IQ--KPNTHVYMCGLKGMQPPID 370 (402)
T ss_dssp HT--STTEEEEEEECGGGHHHHH
T ss_pred hc--cCCcEEEEECCHHHHHHHH
Confidence 21 1358999999999999997
No 22
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=8.7e-37 Score=282.48 Aligned_cols=216 Identities=18% Similarity=0.304 Sum_probs=179.4
Q ss_pred CCCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296 74 NPDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152 (328)
Q Consensus 74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk 152 (328)
.++.|+.++|++++.++++++.|+|+.++. ....|.||||+.++++. + ..|+|||++.+.+.+.++|.||
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~-------g--~~R~ySi~s~~~~~~~l~i~Vk 74 (321)
T 2pia_A 4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPN-------G--SRRTYSLCNDSQERNRYVIAVK 74 (321)
T ss_dssp TTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTT-------S--CEEEEECCSCTTCCSEEEEEEE
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCC-------C--CcEEEEeCCCCCCCCeEEEEEE
Confidence 356789999999999999999999998863 34589999999999863 3 8899999999987789999999
Q ss_pred EeCCCc-cchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCc
Q 020296 153 VYPEGK-MSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPD 230 (328)
Q Consensus 153 ~~~~G~-~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~ 230 (328)
.+++|. +|+||+ ++++||+|.|.||+|.|.++++ .++++||||||||||+++|++++...+ . .+++|+|++|+.+
T Consensus 75 ~~~~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-~-~~v~l~~~~r~~~ 151 (321)
T 2pia_A 75 RDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-L-RSFRLYYLTRDPE 151 (321)
T ss_dssp CCTTSCSHHHHHHHSCCTTCEEEECCCBCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-S-SEEEEEEEESCGG
T ss_pred EecCCcchhHHHHhcCCCCCEEEEeCCccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-C-CcEEEEEEECChh
Confidence 999998 999999 8999999999999999988764 689999999999999999999998764 2 6899999999999
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcch
Q 020296 231 DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGE 310 (328)
Q Consensus 231 d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~ 310 (328)
+++|.+||++|+ ..+++++++ +.... .|++..+.+.+. ...+..||+|||++|+++++
T Consensus 152 ~~~~~~el~~l~-~~~~~~~~~--~~~~~-----~g~~~~~~ll~~---~~~~~~vyvCGP~~m~~~v~----------- 209 (321)
T 2pia_A 152 GTAFFDELTSDE-WRSDVKIHH--DHGDP-----TKAFDFWSVFEK---SKPAQHVYCCGPQALMDTVR----------- 209 (321)
T ss_dssp GCTTHHHHHSTT-TTTTEEEEE--CTTCT-----TSCCCHHHHHSS---CCTTEEEEEESCHHHHHHHH-----------
T ss_pred hhHHHHHHhcCc-cCCeEEEEE--CCCcc-----cCccCHHHHhcc---cCCCCEEEEECCHHHHHHHH-----------
Confidence 999999999886 334577754 33221 234432222222 22468999999999999998
Q ss_pred HHHHHhhcCCCCCCeEe
Q 020296 311 LSGILKDLGYTEQMVYK 327 (328)
Q Consensus 311 ~~~~L~~~G~~~~~I~~ 327 (328)
..|++ +++++||.
T Consensus 210 --~~l~~--~~~~~i~~ 222 (321)
T 2pia_A 210 --DMTGH--WPSGTVHF 222 (321)
T ss_dssp --HHTTT--SCTTCEEE
T ss_pred --HHHHh--CCHhhEEE
Confidence 88877 89999984
No 23
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=2.9e-36 Score=276.83 Aligned_cols=236 Identities=23% Similarity=0.341 Sum_probs=185.4
Q ss_pred cCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCC---
Q 020296 72 ALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTE--- 142 (328)
Q Consensus 72 ~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~--- 142 (328)
...+.....++|++++.+++ ++.+++|+++.. ...+.||||+.+.++.. +..+ ....|+|||+|.+.
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~-~~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySias~~~~~~ 90 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG-NLKYIEGQSIGIIPPGV---DKNGKPEKLRLYSIASTRHGDD 90 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS-CCCCCTTCEEEEECSSB---CTTSCBCCCEEEEBCSCTTTTT
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-ccccCCCCEEEEEcCCC---cccCCCCCCcceecCCCCcccC
Confidence 34456666899999999999 899999998752 36899999999997643 0012 24689999999875
Q ss_pred -CCCeEEEEEEEe----------CCCccchhhhcCCCCCEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHHHH
Q 020296 143 -AKGHFDLLIKVY----------PEGKMSQHFASLKPGDVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIEAI 210 (328)
Q Consensus 143 -~~~~l~l~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~~l 210 (328)
+.+.++|+||.. +.|.+|+||+++++||+|.|.||+|.+.. +.+..++++||||||||||++++++++
T Consensus 91 ~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~ 170 (304)
T 2bmw_A 91 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRM 170 (304)
T ss_dssp TSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 368999999982 35899999999999999999999998653 434568999999999999999999998
Q ss_pred HhCC------C--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHh------h
Q 020296 211 LKNP------D--DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTAL------K 275 (328)
Q Consensus 211 ~~~~------~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~------~ 275 (328)
+... . ...+++|+|++|+.+|++|.+||+++.++++ +++++++++++.+.|.+..++++..+.+ +
T Consensus 171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~ 250 (304)
T 2bmw_A 171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 250 (304)
T ss_dssp HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence 7542 0 1368999999999999999999999999988 6999999998877777777776532221 1
Q ss_pred cCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296 276 GLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322 (328)
Q Consensus 276 ~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~ 322 (328)
.+.. .+..||+|||++|+++++.. +..++.+.|++.
T Consensus 251 ~~~~--~~~~vyvCGp~~m~~~v~~~---------l~~~~~~~g~~~ 286 (304)
T 2bmw_A 251 LIKN--QKTHTYICGPPPMEEGIDAA---------LSAAAAKEGVTW 286 (304)
T ss_dssp HHTS--TTEEEEEEECTTHHHHHHHH---------HHHHHHTTTCCH
T ss_pred Hhhc--CCcEEEEECCHHHHHHHHHH---------HHHHHHHcCccH
Confidence 1222 35789999999999998622 234556667654
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=4e-36 Score=277.13 Aligned_cols=228 Identities=25% Similarity=0.380 Sum_probs=183.1
Q ss_pred CCCCCeEEEEEEEEEEecCC--------------eeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCc--------c
Q 020296 73 LNPDKWIGFKLQDTARVSHN--------------SHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTK--------Y 130 (328)
Q Consensus 73 l~~~~~~~~~v~~~~~~s~~--------------~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~--------~ 130 (328)
..+.....++|++++.++++ +.+++|+.+. ....+.||||+.|+++... ..+. .
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~-~~~~~~pGQ~v~l~~~~~~---~~g~~~~~~~~~~ 91 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDH-SAYPYVIGQSGGVIPPGED---PEKKAKGLADVGY 91 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCT-TTCCCCTTCEEEEECSSBC---HHHHHTTCSCCBC
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCC-CcCcccCCCEEEEECCCCc---cccCccchhhcCC
Confidence 34455678999999999998 9999999874 3467999999999976430 0011 3
Q ss_pred ccccccCCcCCC----CCCeEEEEEEEe----------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEE
Q 020296 131 VVRPYTPISDTE----AKGHFDLLIKVY----------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMI 194 (328)
Q Consensus 131 ~~RpYTi~s~~~----~~~~l~l~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlI 194 (328)
..|+|||++.+. +.+.++|+||.+ ++|.+|+||+++++||+|.|.||+|.|...+ +..++++||
T Consensus 92 ~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlI 171 (314)
T 2rc5_A 92 TVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFL 171 (314)
T ss_dssp CCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEE
T ss_pred CceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEE
Confidence 679999999985 468999999997 3688999999999999999999999976544 346899999
Q ss_pred ecCccHHHHHHHHHHHHhCCC--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCC-CCCcccccCHH
Q 020296 195 AGGTGITPMLQVIEAILKNPD--DNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKN-WKGGVGYISKD 271 (328)
Q Consensus 195 AgGtGItP~~~ll~~l~~~~~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~-~~g~~g~i~~~ 271 (328)
||||||||+++|++++..... ...+++|+|++|+.+|++|.+||+++.+++++++++++++++... |.+..|+++..
T Consensus 172 agGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~ 251 (314)
T 2rc5_A 172 ATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHR 251 (314)
T ss_dssp EEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHH
T ss_pred ECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHH
Confidence 999999999999999986532 236899999999999999999999999888899999999887554 47777887743
Q ss_pred HHh------hcCCCCCCCcEEEEE-CChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 272 TAL------KGLPSPSDDALILVC-GPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 272 ~l~------~~~~~~~~~~~v~vC-GP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
+.+ +.++. . ..+|+| ||++|+++++ ..|.++|+
T Consensus 252 l~~~~~~l~~~~~~--~-~~~yvCGGp~~m~~~v~-------------~~L~~~g~ 291 (314)
T 2rc5_A 252 VREQAEAVKKILNG--G-GRFYICGGPKGMEKGVI-------------EEIQKISG 291 (314)
T ss_dssp HHHTHHHHHHHHHH--T-CEEEEEESSTTTHHHHH-------------HHHHHHHT
T ss_pred HHHhHHHHHHHhhc--C-CeEEEeCCcHHHHHHHH-------------HHHHHHHh
Confidence 322 11211 2 335999 9999999998 88888887
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=100.00 E-value=8.2e-34 Score=253.78 Aligned_cols=216 Identities=10% Similarity=0.073 Sum_probs=171.1
Q ss_pred CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296 75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153 (328)
Q Consensus 75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~ 153 (328)
+..|+.++|++++.+++++++|+|+.++ .....+.|||||.++++.. .+....|+||+++.+. +.++|.|+.
T Consensus 5 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~~~~R~YSi~~~~~--~~~~i~~~~ 77 (252)
T 2gpj_A 5 KPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQA-----GERPLMRTYTIRQQRD--DEIDVDFVL 77 (252)
T ss_dssp -CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCT-----TSCCEEEEEECCEEET--TEEEEEEEC
T ss_pred CCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccC-----CCCCCCCceeeeccCC--CEEEEEEEE
Confidence 4568899999999999999999999876 3334689999999999853 2456899999999765 789999988
Q ss_pred eCC-CccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296 154 YPE-GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI 232 (328)
Q Consensus 154 ~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~ 232 (328)
+++ |.+|+||+++++||+|.|.||.|.|.+++. .++++|||||||||||++|++++... .++++++++++.+|+
T Consensus 78 ~~~~G~~S~~l~~l~~Gd~l~v~gP~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~~~~d~ 152 (252)
T 2gpj_A 78 HDTDGPASSWAKTAQVGELIQIGGPGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVLSEADI 152 (252)
T ss_dssp CSSCCHHHHHHHHCCTTCEEEEEEEECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEESSGGGC
T ss_pred eCCCCcHHHHHhhCCCCCEEEEecCCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEECCHHHh
Confidence 876 999999999999999999999999988654 57899999999999999999998432 578899999998886
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296 233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312 (328)
Q Consensus 233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~ 312 (328)
...+ ..++++++++.+.... +. |....+.+.+.. .+..+..+|+|||++||++++
T Consensus 153 ~~l~-------~~~~~~v~~~~~~~~~-~~---g~~~~~~l~~~~-~~~~~~~vy~CGP~~m~~av~------------- 207 (252)
T 2gpj_A 153 QPLV-------HPEHVELHWVINPEAD-PE---GRPLVERIAQLP-WLAGEPAVWIACEFNSMRALR------------- 207 (252)
T ss_dssp CCCC-------CCTEEEEEEEECSSCC-TT---CHHHHHHHTTSC-CCSSCEEEEEEEEHHHHHHHH-------------
T ss_pred hccc-------CCCCcEEEEEeCCCCC-cc---cHHHHHHHHhcc-CCCCCcEEEEEcCHHHHHHHH-------------
Confidence 5321 2345888887755422 11 222234454431 122357899999999999998
Q ss_pred HHHh-hcCCCCCCeEe
Q 020296 313 GILK-DLGYTEQMVYK 327 (328)
Q Consensus 313 ~~L~-~~G~~~~~I~~ 327 (328)
..|. ++|+++++||.
T Consensus 208 ~~l~~~~G~~~~~i~~ 223 (252)
T 2gpj_A 208 RHFKQAHALPKSHFYT 223 (252)
T ss_dssp HHHHHHCCCCGGGEEE
T ss_pred HHHHHhcCCCHHHeEE
Confidence 8887 89999999984
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.96 E-value=3.6e-30 Score=242.33 Aligned_cols=175 Identities=22% Similarity=0.267 Sum_probs=144.4
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEe--------CCCccchhhhc-CCCCCEEEEEc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVY--------PEGKMSQHFAS-LKPGDVVEVKG 176 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~G 176 (328)
.+.+|||+.+..+ ...|+|||+|+|.+ .+.++|+||.+ ++|.+|+||++ +++||+|.+.|
T Consensus 145 ~~~~Gq~v~l~~~----------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~ 214 (374)
T 1ddg_A 145 QLDAEALINLLRP----------LTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFI 214 (374)
T ss_dssp CCCHHHHHHHSCB----------CCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEE
T ss_pred CCCHHHHHhhccC----------CCCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEE
Confidence 7899999987643 27899999999875 78999999987 67999999997 99999999999
Q ss_pred -eeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEE
Q 020296 177 -PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTV 254 (328)
Q Consensus 177 -P~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~ 254 (328)
|.|.|.++.+...+++|||||||||||+++++++.... ...+++|+|++|+. +|++|.+||+++.+.++.++++++.
T Consensus 215 ~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~ 293 (374)
T 1ddg_A 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAW 293 (374)
T ss_dssp ECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEE
T ss_pred eeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEE
Confidence 55689887766789999999999999999999988653 34789999999998 7999999999999888778998888
Q ss_pred eCCCCCCCCcccccCHHHHh------hcCCCCCCCcEEEEEC-ChhhHHhhh
Q 020296 255 DNPTKNWKGGVGYISKDTAL------KGLPSPSDDALILVCG-PPGMMKHVS 299 (328)
Q Consensus 255 ~~~~~~~~g~~g~i~~~~l~------~~~~~~~~~~~v~vCG-P~~m~~~v~ 299 (328)
+++.. .+++++..+.+ +.+. ++..||||| |++|++++.
T Consensus 294 Srd~~----~k~yVq~~l~~~~~~l~~~l~---~~~~vYvCG~p~~M~~~V~ 338 (374)
T 1ddg_A 294 SRDQK----EKVYVQDKLREQGAELWRWIN---DGAHIYVCGDANRMAKDVE 338 (374)
T ss_dssp TTSSS----SCCCHHHHHHHTHHHHHHHHH---TTCEEEEEECTTTHHHHHH
T ss_pred ecCCC----CCccHHHHHHHhHHHHHHHHh---CCcEEEEECCCHHHHHHHH
Confidence 87653 23555432221 1221 258999999 999999997
No 27
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.95 E-value=1.2e-27 Score=229.25 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=132.4
Q ss_pred ccccccCCcCCCC-CCeEEEEEEEe----C-------CCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecC
Q 020296 131 VVRPYTPISDTEA-KGHFDLLIKVY----P-------EGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGG 197 (328)
Q Consensus 131 ~~RpYTi~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgG 197 (328)
..|+|||+|+|.+ .+.++|+|+.+ + .|.+|+||+++++||+|.|.| |.|.|.++.+...+++|||||
T Consensus 209 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagG 288 (435)
T 1f20_A 209 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG 288 (435)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCG
T ss_pred CCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECC
Confidence 5699999999875 68999999864 2 388999999999999999999 667998887667899999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296 198 TGITPMLQVIEAILKN----PDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT 272 (328)
Q Consensus 198 tGItP~~~ll~~l~~~----~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~ 272 (328)
||||||++|++++... .....+++|+|++|+.+ |++|.+||++|.+.++.++++.++++++..+ +++++..
T Consensus 289 tGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~~---k~yVq~~- 364 (435)
T 1f20_A 289 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KKYVQDV- 364 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CCCHHHH-
T ss_pred cCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCCC---CcchhhH-
Confidence 9999999999998753 12347899999999997 7899999999998877788988888875433 4566532
Q ss_pred HhhcCC-----CC-CCCcEEEEECChhhHHhhh
Q 020296 273 ALKGLP-----SP-SDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 273 l~~~~~-----~~-~~~~~v~vCGP~~m~~~v~ 299 (328)
+.+.+. .. .++..||||||++|++++.
T Consensus 365 l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~ 397 (435)
T 1f20_A 365 LQEQLAESVYRALKEQGGHIYVCGDVTMAADVL 397 (435)
T ss_dssp HHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHH
T ss_pred HHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHH
Confidence 222110 00 1357899999999999997
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.94 E-value=4.6e-27 Score=222.30 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=129.7
Q ss_pred cccccccCCcCCCC-CCeEEEEEEEeCC----------CccchhhhcCCCCCEEE--EEceeeccccCCCCCceEEEEec
Q 020296 130 YVVRPYTPISDTEA-KGHFDLLIKVYPE----------GKMSQHFASLKPGDVVE--VKGPIEKLRYSPNMKKHIGMIAG 196 (328)
Q Consensus 130 ~~~RpYTi~s~~~~-~~~l~l~Vk~~~~----------G~~S~~L~~l~~Gd~v~--v~GP~G~~~~~~~~~~~ivlIAg 196 (328)
...|+|||+|+|.. .+.++|+|+.++. |.+|+||+++++||+|. |+||+|.|.++.+...+++||||
T Consensus 169 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~~~~~piImIg~ 248 (393)
T 4dql_A 169 IRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGP 248 (393)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSSCCCCCSSTTSCEEEECC
T ss_pred CcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCCCcccCccCCCCeEEEcc
Confidence 47899999999875 5899999997743 88999999999999998 78999999998776789999999
Q ss_pred CccHHHHHHHHHHH---HhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296 197 GTGITPMLQVIEAI---LKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT 272 (328)
Q Consensus 197 GtGItP~~~ll~~l---~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~ 272 (328)
|||||||++++++. ...+.+..+++|+|++|+ .+|++|.+||+++.+. ++++++.+.++++.. .+++++..+
T Consensus 249 GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l~l~~a~Sr~~~~---~k~yVq~~l 324 (393)
T 4dql_A 249 GTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GIITLHTAFSRMPNQ---PKTYVQHVM 324 (393)
T ss_dssp GGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSCEEEEEESSCTTS---CCCCHHHHH
T ss_pred CceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCeEEEEEEeCCCCC---CCcchhhHH
Confidence 99999999999984 334334468999999999 5899999999999875 668999998885432 245554322
Q ss_pred ------HhhcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296 273 ------ALKGLPSPSDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 273 ------l~~~~~~~~~~~~v~vCGP~-~m~~~v~ 299 (328)
+.+.+ .++..||||||. .|.++++
T Consensus 325 ~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~ 355 (393)
T 4dql_A 325 EQDGKKLIELL---DQGAHFYICGDGSQMAPAVE 355 (393)
T ss_dssp HHTHHHHHHHH---HTTCEEEEEEETTTHHHHHH
T ss_pred HhCHHHHHHHH---hCCcEEEEECCchhhHHHHH
Confidence 11122 135899999995 5666776
No 29
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.94 E-value=2.2e-27 Score=232.45 Aligned_cols=168 Identities=18% Similarity=0.258 Sum_probs=131.7
Q ss_pred ccccccCCcCCC-CCCeEEEEEEEe-----------CCCccchhhhcC-----------CCCC-------EEEEEceee-
Q 020296 131 VVRPYTPISDTE-AKGHFDLLIKVY-----------PEGKMSQHFASL-----------KPGD-------VVEVKGPIE- 179 (328)
Q Consensus 131 ~~RpYTi~s~~~-~~~~l~l~Vk~~-----------~~G~~S~~L~~l-----------~~Gd-------~v~v~GP~G- 179 (328)
..|+|||+|++. +.+.++|+||.+ ++|.+|+||+++ ++|| .|.|.||.|
T Consensus 290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~ 369 (539)
T 2qtl_A 290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN 369 (539)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence 569999999986 478999999987 458999999976 8999 999999986
Q ss_pred ccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---C--CCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296 180 KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---P--DDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 180 ~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~--~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
.|.++.+...+++|||||||||||+++++++... . ....+++|||++|+. +|++|.+||++|.+.++.++++++
T Consensus 370 ~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 449 (539)
T 2qtl_A 370 SFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVS 449 (539)
T ss_dssp CCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEE
T ss_pred CccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCCcEEEEE
Confidence 8988876678999999999999999999985321 1 134789999999999 799999999999998877899999
Q ss_pred EeCCCC--CCCCcccccCHHHHhhcCCCC-----CCCcEEEEECCh-hhHHhhh
Q 020296 254 VDNPTK--NWKGGVGYISKDTALKGLPSP-----SDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 254 ~~~~~~--~~~g~~g~i~~~~l~~~~~~~-----~~~~~v~vCGP~-~m~~~v~ 299 (328)
++++.. .|.+.++|++. .|.+..... ..+..||||||+ +|++++.
T Consensus 450 fSRd~~~~~~~g~k~yVqd-~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~ 502 (539)
T 2qtl_A 450 FSRDAPVGEEEAPAKYVQD-NIQLHGQQVARILLQENGHIYVCGDAKNMAKDVH 502 (539)
T ss_dssp ESSSCC------CCCSHHH-HHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHH
T ss_pred EccCCCccccCCCccchhH-HHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHH
Confidence 888654 36778899984 443322110 125789999997 9999997
No 30
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.94 E-value=8.8e-27 Score=234.65 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred ccccccCCcCCCC-CCeEEEEEEEe----C-------CCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecC
Q 020296 131 VVRPYTPISDTEA-KGHFDLLIKVY----P-------EGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGG 197 (328)
Q Consensus 131 ~~RpYTi~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgG 197 (328)
..|+|||+|+|.+ .+.++|+|+.+ + .|.+|+||+++++||+|.|.+ |.|.|.++.+...+++|||||
T Consensus 430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagG 509 (688)
T 1tll_A 430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG 509 (688)
T ss_dssp CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEG
T ss_pred ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcC
Confidence 5799999999875 68899999864 2 288999999999999999999 667999887667899999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296 198 TGITPMLQVIEAILKN----PDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT 272 (328)
Q Consensus 198 tGItP~~~ll~~l~~~----~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~ 272 (328)
||||||++|++++... .....+++|+|++|+.+ |++|.+||++|.+.+++++++++++++...| +++++. .
T Consensus 510 tGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~---k~yVq~-~ 585 (688)
T 1tll_A 510 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KKYVQD-V 585 (688)
T ss_dssp GGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CCCHHH-H
T ss_pred cchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCC---ccchhh-h
Confidence 9999999999998753 22347899999999998 7899999999998887789999988876543 355553 2
Q ss_pred HhhcC-----CCC-CCCcEEEEECChhhHHhhh
Q 020296 273 ALKGL-----PSP-SDDALILVCGPPGMMKHVS 299 (328)
Q Consensus 273 l~~~~-----~~~-~~~~~v~vCGP~~m~~~v~ 299 (328)
|.+.+ ... ..+..||||||++|++++.
T Consensus 586 l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~ 618 (688)
T 1tll_A 586 LQEQLAESVYRALKEQGGHIYVCGDVTMAADVL 618 (688)
T ss_dssp HHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHH
T ss_pred hHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 22211 000 1358999999999999997
No 31
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.93 E-value=1.2e-25 Score=215.68 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=131.1
Q ss_pred ccccccccCCcCCCC-CCeEEEEEEEe---------CCCccchhhhcCCCCC------EEEEEceeeccccCCCCCceEE
Q 020296 129 KYVVRPYTPISDTEA-KGHFDLLIKVY---------PEGKMSQHFASLKPGD------VVEVKGPIEKLRYSPNMKKHIG 192 (328)
Q Consensus 129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~GP~G~~~~~~~~~~~iv 192 (328)
....|+|||+|++.. .+.++|+|+.+ +.|.+|+||+++.+|+ .|.+.+|.|.|.++.+...+++
T Consensus 231 ~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piI 310 (458)
T 3qfs_A 231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVI 310 (458)
T ss_dssp BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEE
T ss_pred CCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceE
Confidence 347899999999864 68899988642 3589999999887765 6999999999999877678999
Q ss_pred EEecCccHHHHHHHHHHHH---hCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296 193 MIAGGTGITPMLQVIEAIL---KNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI 268 (328)
Q Consensus 193 lIAgGtGItP~~~ll~~l~---~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i 268 (328)
|||||||||||++|+++.. +.+.+..+++|||++|+. +|++|.+||++|.+.++.++++.+++++.. .++++
T Consensus 311 mIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~----~k~yV 386 (458)
T 3qfs_A 311 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----HKVYV 386 (458)
T ss_dssp EECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----SCCCH
T ss_pred EEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCC----CcccH
Confidence 9999999999999999853 232234689999999996 799999999999998766688888887642 45777
Q ss_pred CHHHHh------hcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296 269 SKDTAL------KGLPSPSDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 269 ~~~~l~------~~~~~~~~~~~v~vCGP~-~m~~~v~ 299 (328)
+..+.+ +.+ .++..||||||+ .|+++++
T Consensus 387 qd~l~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~ 421 (458)
T 3qfs_A 387 QHLLKQDREHLWKLI---EGGAHIYVCGDARNMARDVQ 421 (458)
T ss_dssp HHHHHHTHHHHHHHH---HTTCEEEEEEETTTHHHHHH
T ss_pred hHHHHHhHHHHHHHh---cCCCEEEEECCCHHHHHHHH
Confidence 643322 112 135899999996 7999997
No 32
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.91 E-value=7.9e-26 Score=187.76 Aligned_cols=133 Identities=25% Similarity=0.251 Sum_probs=97.0
Q ss_pred CCCCCE-EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHh
Q 020296 166 LKPGDV-VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244 (328)
Q Consensus 166 l~~Gd~-v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~ 244 (328)
|++||+ +.|+||+|+|...+ ..++++||||||||||+++|++++.+.+ .+++|+ ++|+.+|+++.+||++|+.+
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~~~~el~~l~~~ 75 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR 75 (158)
T ss_dssp -----------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred CcCCCEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence 579999 69999999965433 4689999999999999999999998653 489999 99999999999999998642
Q ss_pred CCCeEEEEEEeCC----CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296 245 HPNLKVFYTVDNP----TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY 320 (328)
Q Consensus 245 ~~~~~v~~~~~~~----~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~ 320 (328)
+.+.++++.+ +++|.+..|++++ .+++.++.. +...||+|||++||++++ +.|+++|+
T Consensus 76 ---~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~~~-~~~~vy~CGP~~mm~~v~-------------~~l~~~Gv 137 (158)
T 3lrx_A 76 ---HIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLESE-DWDLVFMVGPVGDQKQVF-------------EVVKEYGV 137 (158)
T ss_dssp ---EEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHHHS-CCSEEEEESCHHHHHHHH-------------HHHGGGTC
T ss_pred ---eEEEEeeccccccCCCCCCCCcccccH-HHHHhhccC-CCCEEEEECCHHHHHHHH-------------HHHHHcCC
Confidence 4443333332 2346778899985 555544433 346899999999999998 99999999
Q ss_pred C
Q 020296 321 T 321 (328)
Q Consensus 321 ~ 321 (328)
+
T Consensus 138 ~ 138 (158)
T 3lrx_A 138 P 138 (158)
T ss_dssp C
T ss_pred C
Confidence 8
No 33
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.91 E-value=1.1e-24 Score=217.17 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=129.3
Q ss_pred cccccccCCcCCCC-CCeEEEEEEE---------eCCCccchhhhcCCC-CC-----EEEEEceeeccccCCCCCceEEE
Q 020296 130 YVVRPYTPISDTEA-KGHFDLLIKV---------YPEGKMSQHFASLKP-GD-----VVEVKGPIEKLRYSPNMKKHIGM 193 (328)
Q Consensus 130 ~~~RpYTi~s~~~~-~~~l~l~Vk~---------~~~G~~S~~L~~l~~-Gd-----~v~v~GP~G~~~~~~~~~~~ivl 193 (328)
...|+|||+|+|.. .+.++|+|+. .+.|.+|+||+++.+ || +|.|.+|.|.|.++.+...+++|
T Consensus 392 l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piim 471 (618)
T 3qe2_A 392 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIM 471 (618)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEE
T ss_pred cccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEE
Confidence 36799999999864 5788888753 235999999998888 88 99999999999998776789999
Q ss_pred EecCccHHHHHHHHHHHHh---CCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccC
Q 020296 194 IAGGTGITPMLQVIEAILK---NPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYIS 269 (328)
Q Consensus 194 IAgGtGItP~~~ll~~l~~---~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~ 269 (328)
||||||||||+++++++.. .+.+..+++|+|++|+. +|++|.+||++|.+....++++.+.+++.. .+++++
T Consensus 472 Ig~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~----~k~yVq 547 (618)
T 3qe2_A 472 VGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----HKVYVQ 547 (618)
T ss_dssp ECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----SCCCHH
T ss_pred EcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----CCCcHH
Confidence 9999999999999999763 32234789999999999 599999999999988554689998888653 356776
Q ss_pred HHHHhh------cCCCCCCCcEEEEECCh-hhHHhhh
Q 020296 270 KDTALK------GLPSPSDDALILVCGPP-GMMKHVS 299 (328)
Q Consensus 270 ~~~l~~------~~~~~~~~~~v~vCGP~-~m~~~v~ 299 (328)
..+.+. .+ .++..||||||+ .|+++++
T Consensus 548 d~l~~~~~~l~~~l---~~~a~vYvCGp~~~M~~~V~ 581 (618)
T 3qe2_A 548 HLLKQDREHLWKLI---EGGAHIYVCGDARNMARDVQ 581 (618)
T ss_dssp HHHHHTHHHHHHHH---HHTCEEEEEEETTTHHHHHH
T ss_pred HHHHHhHHHHHHHH---hCCcEEEEECCchHHHHHHH
Confidence 433221 12 235799999996 9999997
No 34
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.91 E-value=1.1e-25 Score=226.54 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=129.5
Q ss_pred cccccccCCcCCCC-CCeEEEEEEE------------eCCCccchhhhcCCC------------CCEEEEEceeecc---
Q 020296 130 YVVRPYTPISDTEA-KGHFDLLIKV------------YPEGKMSQHFASLKP------------GDVVEVKGPIEKL--- 181 (328)
Q Consensus 130 ~~~RpYTi~s~~~~-~~~l~l~Vk~------------~~~G~~S~~L~~l~~------------Gd~v~v~GP~G~~--- 181 (328)
...|+|||+|+|.. .+.++|+|+. .+.|.+|+||+++++ |++|.|.||+|.|
T Consensus 427 l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~ 506 (682)
T 2bpo_A 427 MTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANY 506 (682)
T ss_dssp CCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTT
T ss_pred cccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccCcCcccCc
Confidence 37899999999874 5889998753 235899999998877 9999999999996
Q ss_pred -----------ccCCCCCceEEEEecCccHHHHHHHHHHHHhCC---------CCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296 182 -----------RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP---------DDNTQVSLLYGNISPDDILLKQKLDIL 241 (328)
Q Consensus 182 -----------~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~---------~~~~~i~L~~~~r~~~d~~~~~el~~l 241 (328)
.++.+...+++|||+|||||||+++++++.... ....+++|||++|+.+|++|.+||++|
T Consensus 507 ~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~~~ 586 (682)
T 2bpo_A 507 KLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEY 586 (682)
T ss_dssp EECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHHHH
T ss_pred eEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHHHH
Confidence 334444689999999999999999999987432 124689999999999999999999999
Q ss_pred HHh-CCCeEEEEEEeCCCCCCCCcccccCHHHHh------hcCCCCCCCcEEEEECC-hhhHHhhh
Q 020296 242 AAS-HPNLKVFYTVDNPTKNWKGGVGYISKDTAL------KGLPSPSDDALILVCGP-PGMMKHVS 299 (328)
Q Consensus 242 ~~~-~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~------~~~~~~~~~~~v~vCGP-~~m~~~v~ 299 (328)
+.+ ..++++++++++++. +.++||+..+.+ +.+. ++..|||||| ++|++++.
T Consensus 587 ~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l~---~~~~vYvCGpa~~M~~~V~ 646 (682)
T 2bpo_A 587 AKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMIN---NGAFIYVCGDAKGMAKGVS 646 (682)
T ss_dssp HHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHHT---TTCEEEEEECSTTHHHHHH
T ss_pred HHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHHh---CCcEEEEeCCchHhHHHHH
Confidence 654 345899999888432 356788743332 1231 3589999999 79999997
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.89 E-value=1.8e-24 Score=176.28 Aligned_cols=128 Identities=23% Similarity=0.218 Sum_probs=99.3
Q ss_pred EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEE
Q 020296 172 VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251 (328)
Q Consensus 172 v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~ 251 (328)
+.|.||+|++...+ ..++++|||||+||||+++|++++.+.+ .+++++ ++|+.+|+++.+||++|..+ +.+.
T Consensus 3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~~el~~l~~~---~~~~ 74 (142)
T 3lyu_A 3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR---HIVE 74 (142)
T ss_dssp ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSHHHHHTTSSE---EEEE
T ss_pred eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhh---eEEE
Confidence 57899999976554 3689999999999999999999998763 589999 99999999999999987643 4444
Q ss_pred EEEeCC----CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296 252 YTVDNP----TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322 (328)
Q Consensus 252 ~~~~~~----~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~ 322 (328)
++++.+ +++|.+.+|+++ +.+++.++.. +...||+|||++||+++. +.+++.|++-
T Consensus 75 ~~~~~~~~~~~d~~~g~~G~v~-~~l~~~~~~~-~~~~vy~CGP~~Mm~av~-------------~~l~~~~~~~ 134 (142)
T 3lyu_A 75 PVPLNPNQDFLANMKNVSQRLK-EKVRELLESE-DWDLVFMVGPVGDQKQVF-------------EVVKEYGVPM 134 (142)
T ss_dssp EECCCTTSCHHHHHHHHHHHHH-HHHHHHHHSS-CCSEEEEESCHHHHHHHH-------------HHHHHHTCCB
T ss_pred EeecccccCCCCCCCCCccchh-HHHHHhcccC-CCCEEEEECCHHHHHHHH-------------HHHHHcCCch
Confidence 444432 234677889998 4566655443 346899999999999998 9999999975
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.89 E-value=7.7e-24 Score=179.66 Aligned_cols=137 Identities=13% Similarity=0.180 Sum_probs=104.8
Q ss_pred EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC------CCCCeEEEEEeeCCCchhh-hHHHHHHHHHh
Q 020296 172 VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP------DDNTQVSLLYGNISPDDIL-LKQKLDILAAS 244 (328)
Q Consensus 172 v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~------~~~~~i~L~~~~r~~~d~~-~~~el~~l~~~ 244 (328)
|.|.||+|.|.++....++++||||||||||+++|+++++... ....+|+|+|++|+.++++ +.+||++|.++
T Consensus 1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ 80 (186)
T ss_dssp CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence 3578999998765456789999999999999999999998641 2357899999999999998 99999999887
Q ss_pred C-----C-CeEEEEEEeCCCCC---------------CCC-----cccccCHHH-HhhcCCC-CCCCcEEEEECChhhHH
Q 020296 245 H-----P-NLKVFYTVDNPTKN---------------WKG-----GVGYISKDT-ALKGLPS-PSDDALILVCGPPGMMK 296 (328)
Q Consensus 245 ~-----~-~~~v~~~~~~~~~~---------------~~g-----~~g~i~~~~-l~~~~~~-~~~~~~v~vCGP~~m~~ 296 (328)
+ + +++++++++++... +.+ ..||++.+. ++..... ...+..||+|||++|++
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~ 160 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAE 160 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHH
T ss_pred HhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHH
Confidence 5 5 59999998875321 111 127777554 3332211 11357899999999999
Q ss_pred hhhcccccCCCcchHHHHHhhcCCC
Q 020296 297 HVSGEKAKDYSQGELSGILKDLGYT 321 (328)
Q Consensus 297 ~v~g~~~~~~~qg~~~~~L~~~G~~ 321 (328)
+++ ..|.++|+.
T Consensus 161 ~v~-------------~~l~~~g~~ 172 (186)
T 3a1f_A 161 TLS-------------KQSISNSES 172 (186)
T ss_dssp HHH-------------HHHHHTCCC
T ss_pred HHH-------------HHHHHhhcc
Confidence 998 999999985
No 37
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=77.47 E-value=2.6 Score=38.36 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=26.0
Q ss_pred CceEEEEecCcc--HHHHHHHHHHHHhCCCCCCeEEEE
Q 020296 188 KKHIGMIAGGTG--ITPMLQVIEAILKNPDDNTQVSLL 223 (328)
Q Consensus 188 ~~~ivlIAgGtG--ItP~~~ll~~l~~~~~~~~~i~L~ 223 (328)
.++|++.||||| |.|.+++++++.+.+ .+|.++
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~g---~~V~~v 36 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQARG---YAVHWL 36 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhCC---CEEEEE
Confidence 468999999997 899999999998763 355544
No 38
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=49.39 E-value=7.7 Score=30.80 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=43.9
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCC---CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE---AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
....|..|.+..... + ..+.|+++.+.. ..+. .+.....++.+.|...++||+|.+..|.|...+
T Consensus 82 ~V~~Gs~V~l~~~~~------~--~~~~~~iVg~~ead~~~~~----~~IS~~SPlG~ALlGk~~GD~v~~~~p~G~~~~ 149 (156)
T 2f23_A 82 VIGLGSVVELEDPLS------G--ERLSVQVVSPAEANVLDTP----MKISDASPMGKALLGHRVGDVLSLDTPKGKREF 149 (156)
T ss_dssp CCCTTCEEEEECTTT------C--CEEEEEEECGGGCBTTSSS----EEEETTSHHHHHHTTCCTTCEEEEEETTEEEEE
T ss_pred EEEeCcEEEEEEcCC------C--CEEEEEEEChhHcCcCCCC----EEECCCCHHHHHHcCCCCCCEEEEEcCCCcEEE
Confidence 356788887765332 2 446677765532 2332 334445888999999999999999999996433
No 39
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=43.27 E-value=75 Score=23.40 Aligned_cols=56 Identities=20% Similarity=0.399 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeeCCCchh---------------------hhHHHHHHHHHhCCCeEEEEEEeCCCCCC
Q 020296 203 MLQVIEAILKNPDDNTQVSLLYGNISPDDI---------------------LLKQKLDILAASHPNLKVFYTVDNPTKNW 261 (328)
Q Consensus 203 ~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~---------------------~~~~el~~l~~~~~~~~v~~~~~~~~~~~ 261 (328)
+..+.+.+.+.+ .++.|+|+..++..- -|++.+.++-.+||.+++...++..++.|
T Consensus 15 lkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivttddkew 91 (162)
T 2l82_A 15 LKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEW 91 (162)
T ss_dssp HHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHH
T ss_pred HHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHH
Confidence 456677777664 689999998764211 25666777777889988888887776555
No 40
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=42.92 E-value=13 Score=29.88 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=30.8
Q ss_pred EEEEEEEeCCCccchhhh--cC--CCCCEEEEEceeeccccCCCCCceEEEEecCccH
Q 020296 147 FDLLIKVYPEGKMSQHFA--SL--KPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGI 200 (328)
Q Consensus 147 l~l~Vk~~~~G~~S~~L~--~l--~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGI 200 (328)
+-+.++..|+...-+|-+ .+ -.+-.|.+.||+-.+ .+..+-|-|||||
T Consensus 70 ~Cv~~~~~p~~~gdryE~tyS~yfgd~GhISvQGpy~t~------~Dt~LAITGGTGi 121 (188)
T 2brj_A 70 LCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTY------EDSFLAITGGAGI 121 (188)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECGGGEEEEEEEEEETT------BCEEEEEEEEEET
T ss_pred EEEEEEecCCCCCcEEEEEEEEEeCCCceEEEecccccc------ccceeeEecCcce
Confidence 445566655443344433 33 345588889988765 3467899999997
No 41
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=41.36 E-value=20 Score=28.45 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=42.7
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeecccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 183 (328)
...|..|.+.. .. + ..+.|+|+.....+. .. -+.....++.+.|...++||+|.+..|.|...+
T Consensus 85 V~~Gs~V~l~~-~~------g--~~~~y~iVg~~ead~-~~--~~IS~~SPlg~ALlGk~vGD~v~v~~P~G~~~~ 148 (158)
T 2p4v_A 85 VFFGAWVEIEN-DD------G--VTHRFRIVGYDEIFG-RK--DYISIDSPMARALLKKEVGDLAVVNTPAGEASW 148 (158)
T ss_dssp CSSSCEEEEEC-TT------C--CCEEEEBCCSTTCCS-SS--CCBCTTSHHHHHSTTCCTTCEEEEECSSCEEEE
T ss_pred EeccEEEEEEE-CC------C--CEEEEEEECHHHcCc-cC--CeecCCCHHHHHhcCCCCCCEEEEEcCCCcEEE
Confidence 56788888765 32 2 456788876653211 11 122334677888889999999999999996443
No 42
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=40.14 E-value=22 Score=27.58 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=42.6
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceee-ccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE-KLR 182 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G-~~~ 182 (328)
...|..|.+..... + ..+.|+++.....+. .. -|.....++.+.|-..++||+|.+..|.| ...
T Consensus 57 V~~Gs~V~l~d~~~------g--~~~~~~iVg~~ead~-~~--~~IS~~SPlG~ALlGk~vGD~v~v~~P~G~~~~ 121 (141)
T 2pn0_A 57 VTMNSTVRFRVESS------A--EEFCLTLVYPKDVDT-SG--EKISILAPVGSALLGLAQGDEIEWPKPGGGVLR 121 (141)
T ss_dssp CCTTCEEEEEETTT------C--CEEEEEEECGGGCCS-SS--CEEETTSTTHHHHTTCBTTCEEEEECTTSSEEE
T ss_pred EEeCcEEEEEECCC------C--CEEEEEEECHhHcCc-cC--CEEcCCCHHHHHHcCCCCCCEEEEEcCCCCEEE
Confidence 56788887765432 2 456788776543211 11 12334577888999999999999999999 543
No 43
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=31.95 E-value=23 Score=27.31 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=41.3
Q ss_pred cccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceee-ccc
Q 020296 108 LDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE-KLR 182 (328)
Q Consensus 108 ~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G-~~~ 182 (328)
...|..|.+..... + ..+.|+++..... +... -+.....++.+.|-..++||+|.+..|.| ...
T Consensus 54 V~~Gs~V~l~~~~~------g--~~~~~~iVg~~ea-d~~~--~~IS~~SPlG~ALlGk~~GD~v~v~~p~G~~~~ 118 (136)
T 3bmb_A 54 VTMNSRVKFRNLSD------G--EVRVRTLVYPAKM-TDSN--TQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 (136)
T ss_dssp CCTTCEEEEEETTT------C--CEEEEEEECGGGC-CCTT--TEEETTSHHHHHHTTCBTTCEEEEEETTTEEEE
T ss_pred EEeCcEEEEEECCC------C--CEEEEEEEChHHc-Cccc--cEecCCCHHHHHHcCCCCCCEEEEEcCCCCEEE
Confidence 56788887765332 2 3466777654321 1100 03334577888999999999999999999 543
No 44
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=30.89 E-value=73 Score=27.63 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=35.9
Q ss_pred CceEEEEecCccHHHHH-HHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEE
Q 020296 188 KKHIGMIAGGTGITPML-QVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYT 253 (328)
Q Consensus 188 ~~~ivlIAgGtGItP~~-~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~ 253 (328)
..++++..||++...+. .+++.+... .++.++.+.... ..+++.++.++.+++++..+
T Consensus 157 ~~~ILv~~GG~d~~~l~~~vl~~L~~~----~~i~vv~G~~~~----~~~~l~~~~~~~~~v~v~~~ 215 (282)
T 3hbm_A 157 KYDFFICMGGTDIKNLSLQIASELPKT----KIISIATSSSNP----NLKKLQKFAKLHNNIRLFID 215 (282)
T ss_dssp CEEEEEECCSCCTTCHHHHHHHHSCTT----SCEEEEECTTCT----THHHHHHHHHTCSSEEEEES
T ss_pred CCeEEEEECCCchhhHHHHHHHHhhcC----CCEEEEECCCch----HHHHHHHHHhhCCCEEEEeC
Confidence 34677778888865544 344444322 368888877644 24677777666677776544
No 45
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.82 E-value=19 Score=28.52 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=38.2
Q ss_pred CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceeeccc
Q 020296 107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLR 182 (328)
Q Consensus 107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~ 182 (328)
....|..|.+..... + ..+.|+++..... +...- +.....++.+.|...++||+|.+..|.|...
T Consensus 85 ~V~~Gs~V~l~~~~~------~--~~~~y~iVg~~ea-d~~~~--~IS~~SPlG~ALlGk~~GD~v~v~~p~G~~~ 149 (158)
T 1grj_A 85 RVIFGATVTVLNLDS------D--EEQTYRIVGDDEA-DFKQN--LISVNSPIARGLIGKEEDDVVVIKTPGGEVE 149 (158)
T ss_dssp BCCTTCEEEEEETTT------T--EEEEEEEECTTTC-BGGGT--EEESSSHHHHHHTTCBTTCEECC------CC
T ss_pred EEEeCcEEEEEECCC------C--CEEEEEEECHHHh-CCcCC--EEcCCCHHHHHHcCCCCCCEEEEEcCCCcEE
Confidence 356788888765332 2 4567888766432 11111 2334578888999999999999999999643
No 46
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=25.99 E-value=48 Score=29.66 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.2
Q ss_pred ceEEEEecCccHHHHHHHHHHH
Q 020296 189 KHIGMIAGGTGITPMLQVIEAI 210 (328)
Q Consensus 189 ~~ivlIAgGtGItP~~~ll~~l 210 (328)
.+|+.|+||||..-++.-++++
T Consensus 5 ~~IV~igGGtGl~~ll~gLk~~ 26 (326)
T 2q7x_A 5 PXITVIGGGTGSPVILXSLREX 26 (326)
T ss_dssp CEEEEECCCTTHHHHHHHHHHS
T ss_pred CeEEEEcCcccHHHHHHHhccC
Confidence 5899999999999998888764
No 47
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=23.38 E-value=47 Score=29.90 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.6
Q ss_pred CCceEEEEecCccHHHHHHHHHHH
Q 020296 187 MKKHIGMIAGGTGITPMLQVIEAI 210 (328)
Q Consensus 187 ~~~~ivlIAgGtGItP~~~ll~~l 210 (328)
...+|+.|+||||..-++.-++++
T Consensus 9 ~~~kIVvigGGtGl~~ll~gLk~~ 32 (341)
T 2p0y_A 9 QRPKIVVIGGGTGLPVVLNGLRKQ 32 (341)
T ss_dssp -CCEEEEECCGGGHHHHHHHHHHS
T ss_pred CCCeEEEECCcccHHHHHHHHHhC
Confidence 346899999999999998877754
No 48
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=22.76 E-value=3.3e+02 Score=24.16 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=43.7
Q ss_pred EecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh-------hHHHHHHHHHhCCCeEEEEEEeCC
Q 020296 194 IAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL-------LKQKLDILAASHPNLKVFYTVDNP 257 (328)
Q Consensus 194 IAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~-------~~~el~~l~~~~~~~~v~~~~~~~ 257 (328)
+..-+=+.-++.|++.++++. ..++.|+.-| .++.+ +.+.++++.+++|++.+..+.+..
T Consensus 175 vsn~ekl~~fL~mL~~~ls~~--t~k~LLV~kN--iD~~Ls~~sy~~i~~~~~~ls~k~~nl~fi~fpS~e 241 (350)
T 3zth_A 175 VSNIDKLSLFLEMLDHLLSQT--TEKYLIVLKN--IDGFISEESYTIFYRQICHLVKKYPNLTFILFPSDQ 241 (350)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC--CSCEEEEEES--CGGGSCHHHHHHHHHHHHHHHHHCTTEEEEEECCSS
T ss_pred hccHHHHHHHHHHHHHHHhcC--CCcEEEEEeC--HHHhhcHHHHHHHHHHHHHHHhhCCCeEEEEEecCC
Confidence 444455777999999998873 3567777655 56654 456688899999999988886653
No 49
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=21.19 E-value=93 Score=24.34 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=35.3
Q ss_pred EEEEEeCCCccchhhh-cCCCCCEEEEEceeeccccCC-CCC----ceEEEEecCcc
Q 020296 149 LLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSP-NMK----KHIGMIAGGTG 199 (328)
Q Consensus 149 l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~-~~~----~~ivlIAgGtG 199 (328)
+.||... |.....+. .++.|++|.|.|=...-.+.. +.. -+++-+.-|+|
T Consensus 88 ~~V~vfG-g~lAE~i~~ylkkG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i~V~~~~g 143 (148)
T 3stb_C 88 HTVRVFD-SDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPGCG 143 (148)
T ss_dssp EEEEECS-HHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTTTEEEEEEEEEECBTTB
T ss_pred EEEEEEC-ChHHHHHHHHhcCCCEEEEEEEEEcceeECCCCCEEeeccEEEEeCCcc
Confidence 4677774 57788887 799999999999766444432 211 35688888887
No 50
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=20.54 E-value=2.1e+02 Score=25.75 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=32.7
Q ss_pred CCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecC
Q 020296 76 DKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPL 120 (328)
Q Consensus 76 ~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~ 120 (328)
..-..++|++.+.+++ +++.+.|.++. ....|.+|+++.+....
T Consensus 9 ~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~-~~~~y~~GD~l~v~p~N 57 (374)
T 1ddg_A 9 DAPLVASLSVNQKITGRNSEKDVRHIEIDLGD-SGLRYQPGDALGVWYQN 57 (374)
T ss_dssp TBCEEEEEEEEEECSCTTCSSEEEEEEEECTT-SCCCCCTTCEEEECCCC
T ss_pred CCCEEEEEEEEEEeCCCCCCceEEEEEEEcCC-CCcccCCCCEEEEEcCC
Confidence 3334588999999985 36778887763 35789999999998654
Done!