Query 020297
Match_columns 328
No_of_seqs 150 out of 1953
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.7E-32 1.5E-36 249.1 21.1 162 46-304 104-277 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-30 2.2E-35 244.7 26.7 78 222-302 268-349 (352)
3 KOG1457 RNA binding protein (c 100.0 2.3E-30 5.1E-35 214.7 19.6 248 43-297 28-284 (284)
4 TIGR01645 half-pint poly-U bin 100.0 9.9E-30 2.2E-34 246.6 22.1 168 47-302 105-284 (612)
5 KOG0117 Heterogeneous nuclear 100.0 4.1E-30 9E-35 232.3 16.6 229 41-309 75-338 (506)
6 KOG0148 Apoptosis-promoting RN 100.0 2.7E-29 5.8E-34 214.0 16.5 176 49-305 62-241 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.5E-28 2.1E-32 232.8 26.4 195 46-302 272-480 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.1E-28 8.9E-33 235.4 22.1 171 48-303 1-175 (481)
9 KOG0144 RNA-binding protein CU 100.0 3.9E-28 8.4E-33 218.7 15.9 163 47-302 32-206 (510)
10 TIGR01622 SF-CC1 splicing fact 100.0 3.9E-27 8.4E-32 228.0 23.4 168 46-301 86-265 (457)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 1.3E-27 2.8E-32 231.6 19.2 220 46-305 55-310 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.5E-26 1.2E-30 222.8 27.0 192 44-302 170-375 (509)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1E-26 2.2E-31 230.4 19.6 155 51-302 2-167 (562)
14 KOG0109 RNA-binding protein LA 99.9 4.2E-27 9.2E-32 202.4 12.0 149 50-303 3-151 (346)
15 TIGR01628 PABP-1234 polyadenyl 99.9 3.3E-26 7.2E-31 226.8 19.4 178 47-302 176-364 (562)
16 KOG0146 RNA-binding protein ET 99.9 3E-26 6.6E-31 195.0 16.1 270 33-306 4-369 (371)
17 KOG0145 RNA-binding protein EL 99.9 4.9E-26 1.1E-30 193.0 16.7 168 47-307 39-214 (360)
18 KOG0131 Splicing factor 3b, su 99.9 6E-26 1.3E-30 183.2 12.7 163 46-306 6-181 (203)
19 KOG4206 Spliceosomal protein s 99.9 9.9E-25 2.2E-29 182.9 19.1 206 46-300 6-220 (221)
20 KOG0145 RNA-binding protein EL 99.9 7.6E-25 1.6E-29 185.8 18.2 220 49-302 127-358 (360)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.4E-24 7.4E-29 210.2 24.0 183 47-300 293-500 (509)
22 KOG0127 Nucleolar protein fibr 99.9 7E-24 1.5E-28 196.2 21.1 236 48-300 116-376 (678)
23 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-23 6.2E-28 201.0 24.2 235 49-300 186-446 (457)
24 KOG0127 Nucleolar protein fibr 99.9 2.9E-24 6.4E-29 198.7 15.8 184 50-302 6-196 (678)
25 KOG0144 RNA-binding protein CU 99.9 1.7E-23 3.6E-28 188.9 14.6 81 219-302 420-504 (510)
26 KOG0110 RNA-binding protein (R 99.9 1.5E-21 3.2E-26 186.1 12.3 161 52-302 518-693 (725)
27 KOG0123 Polyadenylate-binding 99.9 1.6E-20 3.5E-25 174.5 15.9 145 50-302 2-153 (369)
28 KOG0124 Polypyrimidine tract-b 99.8 6.7E-21 1.5E-25 168.8 11.9 165 50-302 114-290 (544)
29 KOG1190 Polypyrimidine tract-b 99.8 8.9E-19 1.9E-23 157.5 21.0 188 49-301 297-490 (492)
30 KOG0105 Alternative splicing f 99.8 1.1E-18 2.3E-23 141.5 18.5 168 48-288 5-177 (241)
31 TIGR01645 half-pint poly-U bin 99.8 6.8E-18 1.5E-22 164.4 27.4 74 48-128 203-284 (612)
32 KOG1190 Polypyrimidine tract-b 99.8 1.7E-18 3.7E-23 155.6 18.2 214 49-302 150-373 (492)
33 KOG0147 Transcriptional coacti 99.8 2.2E-19 4.7E-24 167.3 8.0 175 46-306 176-362 (549)
34 KOG0148 Apoptosis-promoting RN 99.8 1.3E-18 2.8E-23 148.9 11.3 77 223-302 62-142 (321)
35 KOG0123 Polyadenylate-binding 99.8 3.5E-18 7.7E-23 158.9 14.5 159 52-302 79-246 (369)
36 KOG1456 Heterogeneous nuclear 99.8 2.7E-16 5.9E-21 140.1 23.4 231 46-303 117-364 (494)
37 PLN03134 glycine-rich RNA-bind 99.7 3.6E-17 7.8E-22 133.0 13.1 78 223-303 34-115 (144)
38 KOG0110 RNA-binding protein (R 99.7 2.1E-16 4.5E-21 151.3 15.6 203 49-300 385-596 (725)
39 KOG0106 Alternative splicing f 99.7 6.7E-17 1.5E-21 137.1 8.4 166 50-298 2-167 (216)
40 KOG4205 RNA-binding protein mu 99.7 3.8E-16 8.3E-21 140.7 10.8 163 48-305 5-179 (311)
41 PF00076 RRM_1: RNA recognitio 99.6 8.7E-16 1.9E-20 109.1 8.7 67 226-295 1-70 (70)
42 KOG4212 RNA-binding protein hn 99.6 1.9E-14 4.2E-19 130.7 18.8 235 48-302 43-294 (608)
43 TIGR01659 sex-lethal sex-letha 99.6 1.6E-15 3.5E-20 140.4 10.9 81 219-302 103-187 (346)
44 PLN03134 glycine-rich RNA-bind 99.6 5.2E-15 1.1E-19 120.4 12.3 78 45-129 30-115 (144)
45 KOG0147 Transcriptional coacti 99.6 2.7E-15 5.9E-20 140.1 11.3 229 47-299 276-525 (549)
46 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.1E-15 4.6E-20 141.2 10.5 77 223-302 3-83 (352)
47 KOG1548 Transcription elongati 99.6 6E-14 1.3E-18 124.3 18.8 201 43-300 128-350 (382)
48 PLN03120 nucleic acid binding 99.6 9E-15 1.9E-19 127.5 10.5 76 223-302 4-80 (260)
49 KOG0107 Alternative splicing f 99.6 5.9E-15 1.3E-19 119.0 8.1 76 223-302 10-85 (195)
50 KOG0125 Ataxin 2-binding prote 99.6 1E-14 2.2E-19 128.2 9.7 84 222-308 95-180 (376)
51 TIGR01648 hnRNP-R-Q heterogene 99.6 2.4E-14 5.1E-19 139.6 12.5 77 48-129 232-308 (578)
52 PLN03213 repressor of silencin 99.6 9.7E-15 2.1E-19 134.5 9.2 81 222-305 9-91 (759)
53 KOG0114 Predicted RNA-binding 99.6 1.8E-14 3.9E-19 106.3 8.7 75 222-299 17-92 (124)
54 KOG0122 Translation initiation 99.5 1.9E-14 4.1E-19 121.9 9.0 77 223-302 189-269 (270)
55 KOG0125 Ataxin 2-binding prote 99.5 8.5E-14 1.8E-18 122.5 11.1 77 45-128 92-174 (376)
56 KOG0121 Nuclear cap-binding pr 99.5 5.3E-14 1.2E-18 107.7 7.0 75 222-299 35-113 (153)
57 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 2.9E-18 98.0 8.8 67 226-295 1-70 (70)
58 KOG0107 Alternative splicing f 99.5 9.3E-14 2E-18 112.2 7.5 76 47-129 8-86 (195)
59 KOG0109 RNA-binding protein LA 99.5 8.2E-14 1.8E-18 120.8 7.2 74 224-304 3-76 (346)
60 KOG1456 Heterogeneous nuclear 99.5 1.8E-12 3.8E-17 116.0 15.5 166 49-303 31-200 (494)
61 KOG0105 Alternative splicing f 99.5 2.5E-13 5.5E-18 110.5 9.2 77 223-302 6-83 (241)
62 PLN03121 nucleic acid binding 99.5 3.2E-13 6.8E-18 116.0 10.0 76 223-302 5-81 (243)
63 smart00362 RRM_2 RNA recogniti 99.5 4.4E-13 9.5E-18 94.7 8.9 70 225-297 1-72 (72)
64 KOG0114 Predicted RNA-binding 99.4 5.6E-13 1.2E-17 98.4 9.0 76 46-128 15-95 (124)
65 PF00076 RRM_1: RNA recognitio 99.4 3.7E-13 7.9E-18 95.4 7.8 63 52-121 1-70 (70)
66 KOG4206 Spliceosomal protein s 99.4 2.7E-13 5.8E-18 114.3 8.1 78 222-302 8-90 (221)
67 PF13893 RRM_5: RNA recognitio 99.4 5.6E-13 1.2E-17 90.5 8.1 56 240-299 1-56 (56)
68 KOG4207 Predicted splicing fac 99.4 1.9E-13 4.2E-18 113.0 6.5 77 223-302 13-93 (256)
69 KOG0120 Splicing factor U2AF, 99.4 1.9E-12 4.1E-17 122.5 13.2 182 47-299 287-489 (500)
70 KOG0124 Polypyrimidine tract-b 99.4 8.2E-12 1.8E-16 111.5 16.4 72 49-127 210-289 (544)
71 COG0724 RNA-binding proteins ( 99.4 3.8E-12 8.2E-17 113.7 14.2 72 49-127 115-194 (306)
72 KOG0122 Translation initiation 99.4 1.7E-12 3.7E-17 110.2 10.8 78 44-128 184-269 (270)
73 KOG4212 RNA-binding protein hn 99.4 4.5E-11 9.8E-16 109.1 19.1 75 221-299 534-608 (608)
74 PLN03120 nucleic acid binding 99.4 2E-12 4.3E-17 112.9 9.9 71 49-127 4-79 (260)
75 KOG0121 Nuclear cap-binding pr 99.4 8.5E-13 1.8E-17 101.2 6.7 70 49-125 36-113 (153)
76 KOG0111 Cyclophilin-type pepti 99.4 3.2E-13 7E-18 112.7 4.7 80 223-305 10-93 (298)
77 cd00590 RRM RRM (RNA recogniti 99.4 3.8E-12 8.1E-17 90.3 9.6 71 225-298 1-74 (74)
78 KOG0130 RNA-binding protein RB 99.4 1.3E-12 2.9E-17 101.0 7.4 79 223-304 72-154 (170)
79 smart00360 RRM RNA recognition 99.4 2.9E-12 6.2E-17 90.0 7.9 67 228-297 1-71 (71)
80 KOG0149 Predicted RNA-binding 99.4 3.3E-12 7.1E-17 108.1 9.1 74 223-300 12-89 (247)
81 KOG0126 Predicted RNA-binding 99.4 1.1E-13 2.4E-18 112.3 0.2 76 223-301 35-114 (219)
82 KOG0117 Heterogeneous nuclear 99.3 2.5E-12 5.4E-17 117.6 8.1 78 48-132 258-335 (506)
83 KOG4211 Splicing factor hnRNP- 99.3 4.5E-11 9.8E-16 110.8 15.7 164 48-298 9-178 (510)
84 KOG0108 mRNA cleavage and poly 99.3 5.6E-12 1.2E-16 118.7 8.6 76 224-302 19-98 (435)
85 PLN03213 repressor of silencin 99.3 9E-12 2E-16 115.1 9.3 76 47-129 8-89 (759)
86 COG0724 RNA-binding proteins ( 99.3 1.2E-11 2.5E-16 110.5 9.9 76 223-301 115-194 (306)
87 KOG0113 U1 small nuclear ribon 99.3 1.7E-11 3.6E-16 107.0 10.1 80 219-301 97-180 (335)
88 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 88.2 7.4 63 52-121 1-70 (70)
89 KOG1457 RNA binding protein (c 99.3 1.2E-10 2.6E-15 97.8 13.9 82 221-302 32-118 (284)
90 KOG0132 RNA polymerase II C-te 99.3 1E-11 2.2E-16 120.3 8.7 82 220-307 418-499 (894)
91 KOG0153 Predicted RNA-binding 99.3 1.9E-11 4.2E-16 108.7 9.3 77 222-303 227-304 (377)
92 KOG0108 mRNA cleavage and poly 99.2 2.1E-11 4.6E-16 114.8 7.8 74 50-130 19-100 (435)
93 PLN03121 nucleic acid binding 99.2 7.5E-11 1.6E-15 101.5 9.9 71 48-126 4-79 (243)
94 smart00362 RRM_2 RNA recogniti 99.2 9.3E-11 2E-15 82.5 8.8 65 51-122 1-71 (72)
95 KOG4207 Predicted splicing fac 99.2 3E-11 6.4E-16 100.2 6.6 77 45-128 9-93 (256)
96 KOG0131 Splicing factor 3b, su 99.2 4.5E-11 9.7E-16 97.3 6.4 75 223-300 9-87 (203)
97 KOG0149 Predicted RNA-binding 99.2 4.7E-11 1E-15 101.2 6.6 73 47-127 10-90 (247)
98 KOG0129 Predicted RNA-binding 99.2 8E-10 1.7E-14 103.3 15.2 156 49-280 259-432 (520)
99 KOG0151 Predicted splicing reg 99.2 1.7E-10 3.7E-15 110.9 10.8 85 215-302 166-257 (877)
100 KOG0113 U1 small nuclear ribon 99.2 1.9E-10 4.2E-15 100.4 9.8 81 39-126 91-179 (335)
101 KOG0111 Cyclophilin-type pepti 99.1 3.7E-11 8E-16 100.5 4.4 77 47-130 8-92 (298)
102 KOG0112 Large RNA-binding prot 99.1 4.9E-11 1.1E-15 117.4 5.3 161 47-308 370-537 (975)
103 smart00361 RRM_1 RNA recogniti 99.1 1.9E-10 4.2E-15 81.8 7.0 58 237-297 2-70 (70)
104 KOG0130 RNA-binding protein RB 99.1 9.9E-11 2.1E-15 90.7 5.7 74 48-128 71-152 (170)
105 KOG0120 Splicing factor U2AF, 99.1 6.5E-10 1.4E-14 105.5 11.7 185 45-302 171-369 (500)
106 PF13893 RRM_5: RNA recognitio 99.1 5.2E-10 1.1E-14 75.8 7.9 53 66-125 1-56 (56)
107 cd00590 RRM RRM (RNA recogniti 99.1 8.4E-10 1.8E-14 78.0 9.3 67 51-124 1-74 (74)
108 KOG4454 RNA binding protein (R 99.1 5.4E-11 1.2E-15 99.5 3.3 133 47-288 7-152 (267)
109 KOG2193 IGF-II mRNA-binding pr 99.0 6.1E-11 1.3E-15 107.8 2.1 151 50-299 2-154 (584)
110 KOG0146 RNA-binding protein ET 99.0 4.5E-10 9.8E-15 96.6 7.2 80 222-302 18-101 (371)
111 smart00360 RRM RNA recognition 99.0 1E-09 2.2E-14 76.8 7.6 62 54-122 1-70 (71)
112 KOG4660 Protein Mei2, essentia 99.0 2.4E-09 5.3E-14 100.9 10.9 175 46-301 72-249 (549)
113 KOG0126 Predicted RNA-binding 99.0 3.9E-11 8.4E-16 97.6 -1.3 70 49-125 35-112 (219)
114 KOG0132 RNA polymerase II C-te 99.0 1.1E-09 2.3E-14 106.5 7.7 73 49-128 421-495 (894)
115 KOG0415 Predicted peptidyl pro 98.9 1.7E-09 3.6E-14 96.6 6.9 82 217-301 233-318 (479)
116 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.7E-09 8.1E-14 99.5 7.3 78 222-302 404-485 (940)
117 KOG4208 Nucleolar RNA-binding 98.9 7.9E-09 1.7E-13 86.1 7.7 76 223-301 49-129 (214)
118 KOG4660 Protein Mei2, essentia 98.9 1.9E-09 4.2E-14 101.6 4.5 72 220-295 72-143 (549)
119 smart00361 RRM_1 RNA recogniti 98.8 1.4E-08 3.1E-13 72.1 7.0 54 62-122 1-69 (70)
120 KOG0106 Alternative splicing f 98.8 7.8E-09 1.7E-13 88.2 6.0 76 224-306 2-77 (216)
121 KOG0128 RNA-binding protein SA 98.8 1.7E-09 3.6E-14 106.4 0.3 137 50-302 668-815 (881)
122 KOG0226 RNA-binding proteins [ 98.7 6.6E-08 1.4E-12 83.0 9.4 74 223-299 190-267 (290)
123 KOG0153 Predicted RNA-binding 98.7 4.7E-08 1E-12 87.3 8.8 74 47-127 226-302 (377)
124 KOG4210 Nuclear localization s 98.7 1.7E-08 3.7E-13 91.0 5.9 165 48-302 87-264 (285)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 8.3E-08 1.8E-12 90.6 9.7 79 47-128 403-485 (940)
126 KOG4211 Splicing factor hnRNP- 98.6 1.5E-05 3.3E-10 74.6 20.7 75 48-126 102-180 (510)
127 KOG0533 RRM motif-containing p 98.5 2.7E-07 5.9E-12 80.5 8.0 77 223-302 83-162 (243)
128 KOG4676 Splicing factor, argin 98.5 1.1E-07 2.3E-12 86.2 5.1 198 49-288 7-215 (479)
129 KOG4208 Nucleolar RNA-binding 98.5 5.1E-07 1.1E-11 75.5 7.8 77 46-128 46-130 (214)
130 KOG1365 RNA-binding protein Fu 98.5 2.8E-07 6E-12 83.4 6.6 74 223-299 280-359 (508)
131 KOG1548 Transcription elongati 98.5 6.4E-07 1.4E-11 80.2 8.4 83 222-307 133-226 (382)
132 KOG0116 RasGAP SH3 binding pro 98.5 7.3E-07 1.6E-11 83.9 9.2 76 223-302 288-367 (419)
133 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.7E-11 62.7 7.8 70 224-302 3-77 (90)
134 PF04059 RRM_2: RNA recognitio 98.4 2E-06 4.3E-11 64.5 8.9 79 50-128 2-87 (97)
135 KOG0415 Predicted peptidyl pro 98.4 4.9E-07 1.1E-11 81.0 5.6 78 46-130 236-321 (479)
136 KOG4454 RNA binding protein (R 98.4 1.4E-07 3E-12 79.4 2.0 73 223-298 9-83 (267)
137 PF11608 Limkain-b1: Limkain b 98.4 2E-06 4.3E-11 61.7 7.2 74 50-128 3-77 (90)
138 KOG0533 RRM motif-containing p 98.4 1.9E-06 4E-11 75.3 8.6 75 49-130 83-164 (243)
139 KOG0151 Predicted splicing reg 98.4 1.4E-06 3E-11 84.6 8.3 76 46-128 171-257 (877)
140 KOG4307 RNA binding protein RB 98.3 6.9E-05 1.5E-09 73.0 19.3 72 223-297 867-942 (944)
141 KOG0116 RasGAP SH3 binding pro 98.3 3.4E-06 7.3E-11 79.5 10.0 74 46-127 285-366 (419)
142 KOG4209 Splicing factor RNPS1, 98.3 1E-06 2.2E-11 77.0 6.1 77 222-302 100-180 (231)
143 PF04059 RRM_2: RNA recognitio 98.3 4.4E-06 9.5E-11 62.7 8.4 79 224-302 2-87 (97)
144 KOG4205 RNA-binding protein mu 98.3 6.8E-07 1.5E-11 81.1 4.6 76 223-302 6-85 (311)
145 KOG1365 RNA-binding protein Fu 98.3 2.1E-05 4.5E-10 71.5 13.8 157 47-280 58-225 (508)
146 PF08777 RRM_3: RNA binding mo 98.3 2.9E-06 6.2E-11 65.0 6.8 59 224-284 2-60 (105)
147 KOG0226 RNA-binding proteins [ 97.9 1.9E-05 4.2E-10 68.1 4.8 72 49-123 190-265 (290)
148 KOG4307 RNA binding protein RB 97.8 0.00027 5.8E-09 69.0 11.6 74 47-123 865-942 (944)
149 COG5175 MOT2 Transcriptional r 97.8 5.8E-05 1.3E-09 67.6 6.2 77 223-302 114-203 (480)
150 KOG1855 Predicted RNA-binding 97.7 5.3E-05 1.2E-09 69.9 5.4 66 222-287 230-312 (484)
151 KOG4209 Splicing factor RNPS1, 97.6 9.8E-05 2.1E-09 64.7 5.4 79 46-128 98-180 (231)
152 KOG0112 Large RNA-binding prot 97.5 8.7E-05 1.9E-09 74.3 4.3 84 214-300 363-449 (975)
153 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00031 6.6E-09 46.7 5.6 52 224-278 2-53 (53)
154 KOG0115 RNA-binding protein p5 97.5 0.00038 8.1E-09 60.4 6.8 62 225-286 33-97 (275)
155 PF08952 DUF1866: Domain of un 97.4 0.00079 1.7E-08 54.0 8.1 74 220-301 24-106 (146)
156 KOG2416 Acinus (induces apopto 97.4 0.00038 8.3E-09 66.8 7.1 78 47-128 442-522 (718)
157 COG5175 MOT2 Transcriptional r 97.4 0.0002 4.4E-09 64.2 4.8 77 50-129 115-204 (480)
158 KOG1995 Conserved Zn-finger pr 97.4 0.00022 4.7E-09 64.7 4.8 81 220-303 63-155 (351)
159 KOG3152 TBP-binding protein, a 97.2 0.0002 4.3E-09 62.0 2.4 66 223-288 74-155 (278)
160 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0022 4.7E-08 48.5 7.7 74 223-300 6-90 (100)
161 PF08777 RRM_3: RNA binding mo 97.2 0.00091 2E-08 51.2 5.7 57 50-110 2-60 (105)
162 KOG2416 Acinus (induces apopto 97.2 0.00043 9.3E-09 66.5 4.4 80 219-300 440-520 (718)
163 KOG4676 Splicing factor, argin 97.1 0.0006 1.3E-08 62.4 4.8 75 224-302 8-90 (479)
164 KOG2202 U2 snRNP splicing fact 97.1 0.00025 5.3E-09 61.6 2.0 60 238-300 83-146 (260)
165 KOG1996 mRNA splicing factor [ 97.0 0.0021 4.6E-08 56.8 6.4 75 222-299 280-364 (378)
166 KOG2314 Translation initiation 96.8 0.0025 5.3E-08 61.1 6.1 74 49-124 58-140 (698)
167 KOG2314 Translation initiation 96.8 0.002 4.4E-08 61.7 5.4 74 223-298 58-140 (698)
168 PF15023 DUF4523: Protein of u 96.7 0.0078 1.7E-07 47.8 7.2 74 220-300 83-160 (166)
169 PF10309 DUF2414: Protein of u 96.6 0.011 2.4E-07 40.4 6.7 54 224-281 6-62 (62)
170 KOG2193 IGF-II mRNA-binding pr 96.6 0.0018 3.9E-08 59.9 3.7 72 224-302 2-76 (584)
171 KOG1995 Conserved Zn-finger pr 96.6 0.0026 5.5E-08 57.9 4.5 77 47-130 64-156 (351)
172 KOG0129 Predicted RNA-binding 96.6 0.0053 1.2E-07 58.4 6.4 74 43-123 364-449 (520)
173 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0079 1.7E-07 39.9 5.3 50 50-104 2-53 (53)
174 KOG4849 mRNA cleavage factor I 96.5 0.043 9.4E-07 49.8 11.1 70 49-123 80-157 (498)
175 PF10309 DUF2414: Protein of u 96.4 0.022 4.8E-07 38.9 6.8 56 50-107 6-62 (62)
176 KOG4210 Nuclear localization s 96.2 0.0029 6.2E-08 57.3 2.5 74 47-128 182-264 (285)
177 PF08952 DUF1866: Domain of un 96.2 0.017 3.7E-07 46.4 6.5 72 47-126 25-105 (146)
178 KOG0128 RNA-binding protein SA 96.1 0.00029 6.3E-09 70.3 -5.0 64 223-286 667-734 (881)
179 KOG4849 mRNA cleavage factor I 96.0 0.0066 1.4E-07 55.0 3.5 76 223-300 80-161 (498)
180 KOG1855 Predicted RNA-binding 95.9 0.01 2.2E-07 55.2 4.4 61 46-110 228-309 (484)
181 KOG3152 TBP-binding protein, a 95.9 0.0059 1.3E-07 53.1 2.6 61 49-113 74-154 (278)
182 KOG2253 U1 snRNP complex, subu 95.8 0.017 3.8E-07 56.6 5.8 70 47-124 38-107 (668)
183 PF04847 Calcipressin: Calcipr 95.8 0.031 6.7E-07 47.2 6.7 62 236-302 8-71 (184)
184 KOG2068 MOT2 transcription fac 95.7 0.004 8.6E-08 56.3 1.1 79 224-305 78-166 (327)
185 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.07 1.5E-06 40.3 7.7 71 48-127 5-91 (100)
186 KOG2202 U2 snRNP splicing fact 95.7 0.0053 1.2E-07 53.4 1.5 58 68-128 84-148 (260)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.014 3E-07 49.1 3.4 82 47-128 5-98 (176)
188 KOG4574 RNA-binding protein (c 95.4 0.012 2.6E-07 59.1 3.0 79 221-302 296-374 (1007)
189 PF08675 RNA_bind: RNA binding 95.2 0.084 1.8E-06 38.1 6.2 55 49-109 9-64 (87)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.041 8.8E-07 46.3 5.0 77 223-299 7-95 (176)
191 PF03880 DbpA: DbpA RNA bindin 95.0 0.1 2.2E-06 37.1 6.1 66 225-299 2-74 (74)
192 PF15023 DUF4523: Protein of u 94.8 0.17 3.8E-06 40.3 7.5 77 45-126 82-160 (166)
193 PF08675 RNA_bind: RNA binding 94.7 0.19 4E-06 36.4 6.8 54 224-282 10-63 (87)
194 PF07576 BRAP2: BRCA1-associat 94.5 0.75 1.6E-05 35.4 10.2 77 223-299 13-92 (110)
195 KOG4410 5-formyltetrahydrofola 94.3 0.38 8.3E-06 42.7 9.3 47 48-98 329-378 (396)
196 KOG2253 U1 snRNP complex, subu 94.3 0.084 1.8E-06 52.0 5.6 71 222-300 39-109 (668)
197 KOG4285 Mitotic phosphoprotein 94.1 0.22 4.7E-06 44.6 7.3 68 224-299 198-265 (350)
198 PF04847 Calcipressin: Calcipr 93.8 0.11 2.5E-06 43.8 4.8 58 63-127 9-70 (184)
199 PF11767 SET_assoc: Histone ly 93.5 0.37 8.1E-06 33.4 6.2 49 60-113 11-59 (66)
200 PF07576 BRAP2: BRCA1-associat 93.1 1.7 3.8E-05 33.4 10.0 78 47-125 11-92 (110)
201 KOG0115 RNA-binding protein p5 92.8 0.14 3.1E-06 44.8 4.0 75 50-124 32-110 (275)
202 KOG2135 Proteins containing th 92.8 0.076 1.7E-06 50.2 2.5 74 223-302 372-446 (526)
203 KOG1996 mRNA splicing factor [ 91.9 0.45 9.7E-06 42.5 6.1 59 63-128 300-367 (378)
204 KOG4574 RNA-binding protein (c 91.6 0.13 2.8E-06 52.0 2.6 74 50-128 299-374 (1007)
205 KOG0804 Cytoplasmic Zn-finger 90.4 1.3 2.9E-05 41.9 7.9 77 223-299 74-153 (493)
206 KOG2068 MOT2 transcription fac 89.0 0.14 2.9E-06 46.6 0.4 77 49-129 77-164 (327)
207 KOG2591 c-Mpl binding protein, 88.1 1.5 3.3E-05 42.6 6.7 63 223-288 175-246 (684)
208 KOG2318 Uncharacterized conser 87.9 3 6.5E-05 40.9 8.5 79 220-299 171-305 (650)
209 PF03880 DbpA: DbpA RNA bindin 86.7 3.3 7.2E-05 29.2 6.3 63 59-125 11-74 (74)
210 PF07292 NID: Nmi/IFP 35 domai 86.3 1.9 4E-05 31.8 4.9 23 223-245 52-74 (88)
211 KOG4410 5-formyltetrahydrofola 82.7 11 0.00023 33.8 8.8 48 223-272 330-378 (396)
212 PF11767 SET_assoc: Histone ly 78.6 9.3 0.0002 26.5 5.7 55 234-296 11-65 (66)
213 KOG2318 Uncharacterized conser 78.3 12 0.00025 37.0 8.2 79 46-125 171-305 (650)
214 KOG4019 Calcineurin-mediated s 77.7 1.8 3.8E-05 36.1 2.2 74 224-302 11-90 (193)
215 KOG2591 c-Mpl binding protein, 76.0 10 0.00022 37.2 7.1 57 49-108 175-233 (684)
216 KOG2135 Proteins containing th 74.6 2.3 4.9E-05 40.6 2.4 72 49-128 372-446 (526)
217 KOG4285 Mitotic phosphoprotein 73.2 37 0.0008 30.9 9.4 56 52-113 200-257 (350)
218 KOG2891 Surface glycoprotein [ 70.5 2.3 5E-05 37.8 1.3 68 235-302 173-268 (445)
219 KOG0804 Cytoplasmic Zn-finger 69.3 22 0.00049 34.0 7.5 65 49-113 74-141 (493)
220 PF07292 NID: Nmi/IFP 35 domai 65.7 2.1 4.5E-05 31.5 0.1 26 49-74 52-77 (88)
221 KOG4483 Uncharacterized conser 65.3 9.2 0.0002 35.9 4.1 55 223-280 391-446 (528)
222 KOG4483 Uncharacterized conser 64.5 17 0.00036 34.3 5.6 61 48-112 390-450 (528)
223 PF14111 DUF4283: Domain of un 61.9 15 0.00031 29.5 4.5 70 50-123 16-87 (153)
224 cd04908 ACT_Bt0572_1 N-termina 61.2 48 0.001 22.3 8.3 49 237-286 15-64 (66)
225 PF03468 XS: XS domain; Inter 59.6 11 0.00023 29.3 3.1 47 225-271 10-66 (116)
226 KOG2295 C2H2 Zn-finger protein 57.0 1.7 3.6E-05 42.3 -2.1 65 49-113 231-299 (648)
227 PF10567 Nab6_mRNP_bdg: RNA-re 56.0 16 0.00035 32.9 3.9 81 222-305 14-111 (309)
228 cd04889 ACT_PDH-BS-like C-term 55.4 44 0.00094 21.5 5.2 41 238-278 13-55 (56)
229 COG0150 PurM Phosphoribosylami 52.3 3.7 8E-05 37.8 -0.7 48 237-284 275-322 (345)
230 PF15513 DUF4651: Domain of un 52.0 33 0.00071 23.4 4.0 18 238-255 9-26 (62)
231 PF08544 GHMP_kinases_C: GHMP 49.9 64 0.0014 22.6 5.8 44 238-282 37-80 (85)
232 KOG4019 Calcineurin-mediated s 49.3 22 0.00049 29.7 3.5 76 49-127 10-89 (193)
233 PF13820 Nucleic_acid_bd: Puta 46.8 44 0.00096 27.2 4.8 58 51-108 6-66 (149)
234 PRK15464 cold shock-like prote 44.6 20 0.00043 25.1 2.2 20 77-96 6-25 (70)
235 KOG1924 RhoA GTPase effector D 44.5 44 0.00095 34.5 5.3 12 54-65 607-618 (1102)
236 PRK09507 cspE cold shock prote 42.1 24 0.00051 24.6 2.3 20 77-96 5-24 (69)
237 PRK10943 cold shock-like prote 42.0 24 0.00052 24.5 2.3 20 77-96 5-24 (69)
238 KOG2295 C2H2 Zn-finger protein 39.8 6.5 0.00014 38.4 -1.1 66 223-288 231-300 (648)
239 PF14893 PNMA: PNMA 38.8 29 0.00063 32.2 3.0 50 47-96 16-71 (331)
240 PF08544 GHMP_kinases_C: GHMP 38.2 1.4E+02 0.003 20.8 6.5 41 64-108 37-80 (85)
241 PRK09937 stationary phase/star 37.0 32 0.00069 24.3 2.3 19 78-96 4-22 (74)
242 PF08734 GYD: GYD domain; Int 36.8 1.3E+02 0.0027 22.1 5.6 46 237-282 22-68 (91)
243 PRK14998 cold shock-like prote 36.7 33 0.00071 24.2 2.3 19 78-96 4-22 (73)
244 PRK15463 cold shock-like prote 36.5 33 0.00071 23.9 2.3 20 77-96 6-25 (70)
245 PF00313 CSD: 'Cold-shock' DNA 34.6 49 0.0011 22.4 2.9 20 77-96 2-21 (66)
246 PRK14548 50S ribosomal protein 34.0 1.8E+02 0.0038 21.2 5.8 56 225-280 22-80 (84)
247 PF02714 DUF221: Domain of unk 33.7 49 0.0011 30.3 3.7 36 90-130 1-36 (325)
248 KOG4365 Uncharacterized conser 33.5 5 0.00011 38.0 -2.8 81 224-308 4-88 (572)
249 PRK11901 hypothetical protein; 33.5 3.5E+02 0.0075 25.1 8.8 53 57-110 250-307 (327)
250 KOG2187 tRNA uracil-5-methyltr 33.5 38 0.00083 33.2 2.9 43 85-130 61-103 (534)
251 PRK09890 cold shock protein Cs 33.2 39 0.00085 23.5 2.2 20 77-96 6-25 (70)
252 PF02714 DUF221: Domain of unk 33.1 48 0.001 30.4 3.5 32 264-300 1-32 (325)
253 cd04882 ACT_Bt0572_2 C-termina 32.8 1.4E+02 0.0031 19.4 5.5 48 238-286 14-64 (65)
254 PRK10354 RNA chaperone/anti-te 32.5 39 0.00085 23.5 2.2 20 77-96 6-25 (70)
255 PF11411 DNA_ligase_IV: DNA li 32.4 30 0.00066 20.8 1.3 16 233-248 19-34 (36)
256 TIGR02381 cspD cold shock doma 31.5 45 0.00096 23.0 2.3 19 78-96 4-22 (68)
257 KOG3671 Actin regulatory prote 31.4 1.7E+02 0.0037 28.7 6.7 69 233-302 88-156 (569)
258 cd04458 CSP_CDS Cold-Shock Pro 28.7 60 0.0013 21.8 2.6 19 78-96 3-21 (65)
259 PF00403 HMA: Heavy-metal-asso 28.5 1.7E+02 0.0038 19.0 6.3 54 225-280 1-58 (62)
260 PF14893 PNMA: PNMA 28.1 41 0.00089 31.2 2.1 49 222-270 17-71 (331)
261 KOG1295 Nonsense-mediated deca 28.0 90 0.002 29.3 4.3 69 49-117 7-82 (376)
262 KOG4213 RNA-binding protein La 27.6 68 0.0015 26.9 3.0 51 49-105 111-168 (205)
263 TIGR03636 L23_arch archaeal ri 27.4 2.3E+02 0.005 20.2 5.9 55 225-279 15-72 (77)
264 KOG1295 Nonsense-mediated deca 27.2 86 0.0019 29.5 4.0 67 223-289 7-80 (376)
265 PF09707 Cas_Cas2CT1978: CRISP 26.8 1.3E+02 0.0027 22.1 4.0 43 50-94 26-71 (86)
266 PRK11558 putative ssRNA endonu 26.7 1.1E+02 0.0023 23.0 3.7 46 49-96 27-75 (97)
267 TIGR01873 cas_CT1978 CRISPR-as 26.5 1.2E+02 0.0027 22.2 3.9 47 49-96 25-74 (87)
268 PHA01632 hypothetical protein 25.7 67 0.0014 21.3 2.1 24 52-75 19-42 (64)
269 PRK10905 cell division protein 25.4 3.6E+02 0.0079 24.9 7.5 57 49-109 247-308 (328)
270 cd04879 ACT_3PGDH-like ACT_3PG 25.3 2E+02 0.0043 18.6 6.3 43 226-268 2-45 (71)
271 PF12829 Mhr1: Transcriptional 24.8 1.8E+02 0.0039 21.5 4.5 55 228-282 17-72 (91)
272 KOG4008 rRNA processing protei 24.4 52 0.0011 28.8 1.9 28 47-74 38-65 (261)
273 PF10567 Nab6_mRNP_bdg: RNA-re 23.4 5.7E+02 0.012 23.3 13.0 77 45-128 11-108 (309)
274 PF11823 DUF3343: Protein of u 22.4 1E+02 0.0023 21.3 2.9 27 262-288 2-28 (73)
275 COG0030 KsgA Dimethyladenosine 21.6 1.2E+02 0.0026 27.2 3.7 24 50-73 96-119 (259)
276 KOG4213 RNA-binding protein La 21.2 1.1E+02 0.0024 25.7 3.1 65 223-298 111-183 (205)
277 PF03439 Spt5-NGN: Early trans 21.1 1.5E+02 0.0033 21.2 3.6 29 84-112 41-69 (84)
278 KOG2187 tRNA uracil-5-methyltr 20.1 90 0.002 30.8 2.8 76 228-308 30-107 (534)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.7e-32 Score=249.14 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=137.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
....++|||+|||.++|+++|+++|+.| |.|+.++ ..||||||+|.+.++|++|++.|+|+.+. +
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---g 176 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTI----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR---N 176 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC---C
Confidence 3457899999999999999999999999 7664331 23699999999999999999999999998 8
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
++|+|.|++......
T Consensus 177 r~i~V~~a~p~~~~~----------------------------------------------------------------- 191 (346)
T TIGR01659 177 KRLKVSYARPGGESI----------------------------------------------------------------- 191 (346)
T ss_pred ceeeeeccccccccc-----------------------------------------------------------------
Confidence 999999885321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNS 273 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~ 273 (328)
..++|||+||+.++||++|+++|++||.|+.++|+++.. ++||||+|.+.++
T Consensus 192 ------------------------~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 192 ------------------------KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred ------------------------ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 135799999999999999999999999999999987643 6899999999999
Q ss_pred HHHHHHHhCCCeeCCCCCceeEEEeecCCCC
Q 020297 274 ASSVHHNLQGAVIPSSGSVGMRIQYSKNPFG 304 (328)
Q Consensus 274 A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~ 304 (328)
|++||+.|||..|.+. .++|+|.|++....
T Consensus 248 A~~Ai~~lng~~~~g~-~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 248 AQEAISALNNVIPEGG-SQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHhCCCccCCC-ceeEEEEECCcccc
Confidence 9999999999999763 26999999986533
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1e-30 Score=244.66 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.+|||+||++++++++|+++|++||.|++++|+.+. .||||||+|.+.++|.+||+.|||+.|.| +.|+|.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g---r~i~V~ 344 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN---RVLQVS 344 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 35589999999999999999999999999999998765 39999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+.++
T Consensus 345 ~~~~~ 349 (352)
T TIGR01661 345 FKTNK 349 (352)
T ss_pred EccCC
Confidence 98876
No 3
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=214.72 Aligned_cols=248 Identities=33% Similarity=0.490 Sum_probs=161.0
Q ss_pred CCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCC-----cceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 43 RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE-----KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 43 ~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~-----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
....+..|||||.+||.+++..||..||.+|.|+||+.++++.. +-+|||.|.+..+|..|+++|||++|+.+++
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 44456799999999999999999999999999999999999643 3899999999999999999999999999999
Q ss_pred CeEEEEEcccccccccccccC----CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVAD----TNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYG 193 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (328)
..|+|+++|+..++++.+... ..+..........++....... .... .+...... .-.+.+++.+.+..-.
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd--~~l~-~p~~l~~~--~~a~al~~~~~t~~~~ 182 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHD--EGLS-DPDELQEP--GNADALKENDTTKSEA 182 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcc--cccc-CccccCCc--cccccCCCccccchhh
Confidence 999999999887766543211 0011111111111100000000 0000 00000000 0000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHH
Q 020297 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNS 273 (328)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~ 273 (328)
-..+....|.... ......+.......+.||||.||..+|||++|+.+|++|..+..++|....+..+|||+|++.+.
T Consensus 183 l~a~~~~~P~a~a--~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~ 260 (284)
T KOG1457|consen 183 LSAPDSKAPSANA--HLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQ 260 (284)
T ss_pred hhhhhhcCCcccc--hhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHH
Confidence 0000000000000 00011111223345889999999999999999999999999999999876668899999999999
Q ss_pred HHHHHHHhCCCeeCCCCCceeEEE
Q 020297 274 ASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 274 A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
|..||..|+|..|-.+|+..|+|+
T Consensus 261 at~am~~lqg~~~s~~drgg~~ie 284 (284)
T KOG1457|consen 261 ATDAMNHLQGNLLSSSDRGGMHIE 284 (284)
T ss_pred HHHHHHHhhcceeccccCCCcccC
Confidence 999999999999998877777763
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=9.9e-30 Score=246.58 Aligned_cols=168 Identities=11% Similarity=0.204 Sum_probs=137.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...++|||+||++++++++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+. ||
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~f----G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR 177 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GR 177 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHcc----CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cc
Confidence 346799999999999999999999999 7774432 24699999999999999999999999998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|+|.+......... . .+
T Consensus 178 ~IkV~rp~~~p~a~~-------~----------~~--------------------------------------------- 195 (612)
T TIGR01645 178 NIKVGRPSNMPQAQP-------I----------ID--------------------------------------------- 195 (612)
T ss_pred eeeeccccccccccc-------c----------cc---------------------------------------------
Confidence 999985432110000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSA 274 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A 274 (328)
.........++|||+||++++++++|+++|+.||.|++++|.++. .||||||+|.+.++|
T Consensus 196 ----------------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 196 ----------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred ----------------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 000001124789999999999999999999999999999998754 389999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.+||+.|||+.|+| +.|+|.++..+
T Consensus 260 ~kAI~amNg~elgG---r~LrV~kAi~p 284 (612)
T TIGR01645 260 SEAIASMNLFDLGG---QYLRVGKCVTP 284 (612)
T ss_pred HHHHHHhCCCeeCC---eEEEEEecCCC
Confidence 99999999999999 99999998865
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=232.35 Aligned_cols=229 Identities=17% Similarity=0.209 Sum_probs=157.1
Q ss_pred CCCCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 41 TNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 41 ~~~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
+.++.....+.||||.||.++.|+||+-||++. |.|..++ .+||||||.|.+.++|++|++.||++.|
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEki----G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKI----GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhc----cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 555555678999999999999999999999999 8885553 3479999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccccc-----ccccccCCcccccccc---------------ccCCCCCCCCCCCCCCCC-------
Q 020297 113 DAETKSVLHTEMAKKNLFV-----KRGIVADTNAYDQSKR---------------LRTGGDYTHTGYSAPSPF------- 165 (328)
Q Consensus 113 ~~~~gr~l~v~~a~~~~~~-----~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~------- 165 (328)
.. |+.|.|+.+..++.. .+.+..+.-..+..+- +...+.+..-...++...
T Consensus 151 r~--GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 151 RP--GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred cC--CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 76 999999988766541 1111100000000000 000000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhc
Q 020297 166 HAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS 245 (328)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~ 245 (328)
-+..-.+|++.... .++-.......+.....+.|||+||+.++|||.|+.+|+
T Consensus 229 ~~g~~klwgn~~tV---------------------------dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~ 281 (506)
T KOG0117|consen 229 MPGKIKLWGNAITV---------------------------DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN 281 (506)
T ss_pred cCCceeecCCccee---------------------------eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH
Confidence 00000122211100 011001111122344578999999999999999999999
Q ss_pred cCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCCCCCC
Q 020297 246 AQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKRKDG 309 (328)
Q Consensus 246 ~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~~~~~ 309 (328)
+||.|+.|+.++ -||||+|.++++|.+||+.|||++|.| ..|.|.++|+...++...
T Consensus 282 ~~G~veRVkk~r----DYaFVHf~eR~davkAm~~~ngkeldG---~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 282 EFGKVERVKKPR----DYAFVHFAEREDAVKAMKETNGKELDG---SPIEVTLAKPVDKKKKER 338 (506)
T ss_pred hccceEEeeccc----ceeEEeecchHHHHHHHHHhcCceecC---ceEEEEecCChhhhccch
Confidence 999999999985 499999999999999999999999999 899999999998777764
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-29 Score=213.99 Aligned_cols=176 Identities=15% Similarity=0.262 Sum_probs=139.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCc-ccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYE-ASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~-g~i~~~-~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
---+||+.|...++-|+||+.|.+|+.+. ..||+- . .+||||||.|.+.++|+.||+.|||..+. +|.||.+|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG---~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG---RRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec---cceeeccc
Confidence 34599999999999999999999993221 122221 1 34799999999999999999999999998 79999999
Q ss_pred cccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (328)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (328)
|..|-...- ++ . ..+.
T Consensus 139 ATRKp~e~n-----~~------~----ltfd------------------------------------------------- 154 (321)
T KOG0148|consen 139 ATRKPSEMN-----GK------P----LTFD------------------------------------------------- 154 (321)
T ss_pred cccCccccC-----CC------C----ccHH-------------------------------------------------
Confidence 965531000 00 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC
Q 020297 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
. .-....+.+++|||||+..-+||++||..|++||.|.+|||. +.+||+||+|.+.|+|..||..|||.
T Consensus 155 --------e-V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF--k~qGYaFVrF~tkEaAahAIv~mNnt 223 (321)
T KOG0148|consen 155 --------E-VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF--KDQGYAFVRFETKEAAAHAIVQMNNT 223 (321)
T ss_pred --------H-HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe--cccceEEEEecchhhHHHHHHHhcCc
Confidence 0 001122348999999999999999999999999999999998 56899999999999999999999999
Q ss_pred eeCCCCCceeEEEeecCCCCC
Q 020297 285 VIPSSGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 285 ~i~g~~~~~l~V~~ak~~~~~ 305 (328)
+|.| +.+||+|+|.....
T Consensus 224 ei~G---~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 224 EIGG---QLVRCSWGKEGDDG 241 (321)
T ss_pred eeCc---eEEEEeccccCCCC
Confidence 9999 99999999876433
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=9.5e-28 Score=232.81 Aligned_cols=195 Identities=19% Similarity=0.258 Sum_probs=142.4
Q ss_pred CCCcceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
..++++|||+||+. .+|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~y----G~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~---g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVY----GNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF---GKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEE
Confidence 45688999999997 69999999999999 8886653 45799999999999999999999999998 89999
Q ss_pred EEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (328)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (328)
|.+++.+...... . ...+... . ..+++......+. . .
T Consensus 345 v~~s~~~~~~~~~---~-~~~~~~~-~-~~~d~~~~~~~r~-----------~-----~--------------------- 381 (481)
T TIGR01649 345 VCPSKQQNVQPPR---E-GQLDDGL-T-SYKDYSSSRNHRF-----------K-----K--------------------- 381 (481)
T ss_pred EEEcccccccCCC---C-CcCcCCC-c-ccccccCCccccC-----------C-----C---------------------
Confidence 9998765331110 0 0000000 0 0000000000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEEecC--CcceEEEEEccHHHHHHH
Q 020297 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQE--RHTVCFIEFEDVNSASSV 277 (328)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~--i~~v~i~~~~--~~g~aFV~F~~~~~A~~A 277 (328)
+.. ..-....+++.+|||+|||.++|+++|+++|+.||. |..+++.... .+++|||+|.+.++|.+|
T Consensus 382 ------~~~---~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~A 452 (481)
T TIGR01649 382 ------PGS---ANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEA 452 (481)
T ss_pred ------ccc---ccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHH
Confidence 000 000011245789999999999999999999999998 8899987433 268999999999999999
Q ss_pred HHHhCCCeeCCCCCc------eeEEEeecCC
Q 020297 278 HHNLQGAVIPSSGSV------GMRIQYSKNP 302 (328)
Q Consensus 278 l~~lnG~~i~g~~~~------~l~V~~ak~~ 302 (328)
|..|||+.|.+ + .|+|+|++++
T Consensus 453 l~~ln~~~l~~---~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 453 LIALNHHQLNE---PNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHhcCCccCC---CCCCccceEEEEeccCC
Confidence 99999999998 5 4999999865
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.1e-28 Score=235.37 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=138.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHh--cCceeCCCCCCeEEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDAL--QEMIFDAETKSVLHTE 123 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l--~g~~~~~~~gr~l~v~ 123 (328)
+.++|||+|||.++++++|+++|+.| |.|..++ ..|+||||+|++.++|.+|++.| ++..+. |+.|+|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~f----G~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~---g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPF----GPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIR---GQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEc---CeEEEEE
Confidence 36899999999999999999999999 8885543 46799999999999999999875 678888 8999999
Q ss_pred EcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (328)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (328)
|+..+..... . . . . ..
T Consensus 74 ~s~~~~~~~~-~--~-------------~----~-~~------------------------------------------- 89 (481)
T TIGR01649 74 YSTSQEIKRD-G--N-------------S----D-FD------------------------------------------- 89 (481)
T ss_pred ecCCcccccC-C--C-------------C----c-cc-------------------------------------------
Confidence 9975421110 0 0 0 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCC
Q 020297 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (328)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (328)
........+|||+||++.+|+++|+++|+.||.|.+|+|+++.++++|||+|.+.++|.+|++.|||
T Consensus 90 -------------~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng 156 (481)
T TIGR01649 90 -------------SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNG 156 (481)
T ss_pred -------------CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcC
Confidence 0000113579999999999999999999999999999998766678999999999999999999999
Q ss_pred CeeCCCCCceeEEEeecCCC
Q 020297 284 AVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 284 ~~i~g~~~~~l~V~~ak~~~ 303 (328)
..|.+. ++.|+|.|+|...
T Consensus 157 ~~i~~~-~~~l~v~~sk~~~ 175 (481)
T TIGR01649 157 ADIYNG-CCTLKIEYAKPTR 175 (481)
T ss_pred CcccCC-ceEEEEEEecCCC
Confidence 999762 3689999998643
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.9e-28 Score=218.67 Aligned_cols=163 Identities=18% Similarity=0.275 Sum_probs=138.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-----e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-----~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...-+|||+.||..++|+||+++|++| |.|.++ | -+||||||.|.+.++|.+|+.+|+.+....+...
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~y----g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKY----GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHh----CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 456789999999999999999999999 666443 2 2369999999999999999999999877654468
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
++.|.||.....+.
T Consensus 108 pvqvk~Ad~E~er~------------------------------------------------------------------ 121 (510)
T KOG0144|consen 108 PVQVKYADGERERI------------------------------------------------------------------ 121 (510)
T ss_pred ceeecccchhhhcc------------------------------------------------------------------
Confidence 89999986543221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~ 275 (328)
...+.|||+-|+..+||.|++++|++||.|+++.|+++.. ||||||+|.+++.|.
T Consensus 122 ----------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~ 179 (510)
T KOG0144|consen 122 ----------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAV 179 (510)
T ss_pred ----------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHH
Confidence 0146799999999999999999999999999999998765 999999999999999
Q ss_pred HHHHHhCCC-eeCCCCCceeEEEeecCC
Q 020297 276 SVHHNLQGA-VIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 276 ~Al~~lnG~-~i~g~~~~~l~V~~ak~~ 302 (328)
.||++|||. ++.|.. .+|.|.|+..+
T Consensus 180 ~Aika~ng~~tmeGcs-~PLVVkFADtq 206 (510)
T KOG0144|consen 180 AAIKALNGTQTMEGCS-QPLVVKFADTQ 206 (510)
T ss_pred HHHHhhccceeeccCC-CceEEEecccC
Confidence 999999995 566643 69999999766
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3.9e-27 Score=228.00 Aligned_cols=168 Identities=19% Similarity=0.311 Sum_probs=136.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
+.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+||. |+|..+. |
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~----G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g 157 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKV----GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---G 157 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---C
Confidence 3457899999999999999999999999 7663331 236999999999999999997 9999998 8
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
++|.|.++.......... .. .
T Consensus 158 ~~i~v~~~~~~~~~~~~~------------------~~---~-------------------------------------- 178 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKA------------------AT---H-------------------------------------- 178 (457)
T ss_pred eeeEEeecchhhhhhhhc------------------cc---c--------------------------------------
Confidence 999998764332111000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNS 273 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~ 273 (328)
.....+..++|||+||+..+++++|+++|++||.|..|+|+.+.. +|||||+|.+.++
T Consensus 179 ------------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 179 ------------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred ------------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 000011257899999999999999999999999999999986543 7899999999999
Q ss_pred HHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 274 ASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 274 A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
|.+|++.|||..|.| +.|+|.|+..
T Consensus 241 A~~A~~~l~g~~i~g---~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAG---RPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECC---EEEEEEEccC
Confidence 999999999999999 9999999763
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.3e-27 Score=231.61 Aligned_cols=220 Identities=17% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+..++|||+|||.+++|++|+++|+.| |.|+.++ .+||||||+|.+.++|++||+.||+..+.. |+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~----G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~--Gr 128 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKA----GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP--GR 128 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhh----CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecC--Cc
Confidence 3457899999999999999999999999 7664432 347999999999999999999999999954 78
Q ss_pred eEEEEEcccccccc-----cccccCCc--cccc-----ccccc--CCCCCCCCCCCCCCCCCCCCC-------------C
Q 020297 119 VLHTEMAKKNLFVK-----RGIVADTN--AYDQ-----SKRLR--TGGDYTHTGYSAPSPFHAPPA-------------P 171 (328)
Q Consensus 119 ~l~v~~a~~~~~~~-----~~~~~~~~--~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~ 171 (328)
.|.|.++..+..+. .....+.- .+.. ..... ...+......-....+..... .
T Consensus 129 ~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 129 LLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred cccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 88887765433211 00000000 0000 00000 000000000000000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccC--CC
Q 020297 172 VWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQ--PG 249 (328)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~--G~ 249 (328)
.++..... . .+..............++|||+||+.++|+++|+++|++| |.
T Consensus 209 l~Gr~I~V------------------------d---wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~ 261 (578)
T TIGR01648 209 LWGHVIAV------------------------D---WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK 261 (578)
T ss_pred ecCceEEE------------------------E---eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc
Confidence 00000000 0 0000000001122345789999999999999999999999 99
Q ss_pred eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCC
Q 020297 250 FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 250 i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~ 305 (328)
|++|++++ +||||+|.+.++|++||+.|||.+|.| +.|+|.|++++..+
T Consensus 262 I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~G---r~I~V~~Akp~~~~ 310 (578)
T TIGR01648 262 VERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEG---SEIEVTLAKPVDKK 310 (578)
T ss_pred eEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEEccCCCcc
Confidence 99998873 799999999999999999999999999 99999999887443
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.5e-26 Score=222.82 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=137.2
Q ss_pred CCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCc--------ccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020297 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYE--------ASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (328)
Q Consensus 44 ~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~--------g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~ 113 (328)
......++|||+|||+++|+++|+++|..++... +.|..+ ...+|||||+|.+.++|..||+ |+|+.|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 3455689999999999999999999999863211 233333 3457999999999999999995 9999998
Q ss_pred CCCCCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 114 AETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYG 193 (328)
Q Consensus 114 ~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (328)
|+.|+|...+........ . .......+ .. ..
T Consensus 249 ---g~~l~v~r~~~~~~~~~~-----~----------------~~~~~~~~-----------~~----------~~---- 279 (509)
T TIGR01642 249 ---NVFLKIRRPHDYIPVPQI-----T----------------PEVSQKNP-----------DD----------NA---- 279 (509)
T ss_pred ---CceeEecCccccCCcccc-----C----------------CCCCCCCC-----------cc----------cc----
Confidence 899999654322100000 0 00000000 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEc
Q 020297 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFE 269 (328)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~ 269 (328)
................++|||+|||..+|+++|+++|+.||.|..+.|+.+. .+|||||+|.
T Consensus 280 --------------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~ 345 (509)
T TIGR01642 280 --------------KNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYK 345 (509)
T ss_pred --------------cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEEC
Confidence 0000000000111235799999999999999999999999999999997653 3899999999
Q ss_pred cHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 270 DVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 270 ~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
+.++|..||+.|||..|.| +.|+|.|+...
T Consensus 346 ~~~~a~~A~~~l~g~~~~~---~~l~v~~a~~~ 375 (509)
T TIGR01642 346 DPSVTDVAIAALNGKDTGD---NKLHVQRACVG 375 (509)
T ss_pred CHHHHHHHHHHcCCCEECC---eEEEEEECccC
Confidence 9999999999999999999 89999998654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1e-26 Score=230.39 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=133.8
Q ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 51 ~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
+|||+|||.++||++|+++|+.| |.|+.++ .++|||||+|.+.++|++|++.|++..+. |+.|+|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~----G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i 74 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPF----GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRI 74 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEe
Confidence 79999999999999999999999 7764432 23599999999999999999999999998 899999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|+.......+
T Consensus 75 ~~s~~~~~~~~--------------------------------------------------------------------- 85 (562)
T TIGR01628 75 MWSQRDPSLRR--------------------------------------------------------------------- 85 (562)
T ss_pred ecccccccccc---------------------------------------------------------------------
Confidence 99853211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHH
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHH 279 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~ 279 (328)
....+|||+||+.++++++|+++|++||.|++|+|..+. .+|||||+|.+.++|.+|++
T Consensus 86 ------------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 86 ------------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred ------------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 013579999999999999999999999999999998654 38999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeecCC
Q 020297 280 NLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 280 ~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.|||..+.+ +.|.|.+.+.+
T Consensus 148 ~lng~~~~~---~~i~v~~~~~~ 167 (562)
T TIGR01628 148 KVNGMLLND---KEVYVGRFIKK 167 (562)
T ss_pred HhcccEecC---ceEEEeccccc
Confidence 999999999 89999876655
No 14
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=4.2e-27 Score=202.43 Aligned_cols=149 Identities=20% Similarity=0.324 Sum_probs=138.4
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccccc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~~ 129 (328)
-+|||+|||..+++.+|+.||+.| |+|+++.--|.||||+.+|...|+.|+..|||..++ |..|.|+-+|+|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~y----gkVlECDIvKNYgFVHiEdktaaedairNLhgYtLh---g~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQY----GKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLH---GVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhh----CceEeeeeecccceEEeecccccHHHHhhcccceec---ceEEEEEeccccC
Confidence 369999999999999999999999 999999888899999999999999999999999999 8999999887763
Q ss_pred ccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (328)
+.
T Consensus 76 k~------------------------------------------------------------------------------ 77 (346)
T KOG0109|consen 76 KA------------------------------------------------------------------------------ 77 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
.++|+|+||.+.++.+||+..|++||.|.+++|++ +|+||+|.-.++|..|++.|+|.+++|
T Consensus 78 -------------stkl~vgNis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~g- 139 (346)
T KOG0109|consen 78 -------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQG- 139 (346)
T ss_pred -------------ccccccCCCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhccccccccc-
Confidence 46799999999999999999999999999999985 799999999999999999999999999
Q ss_pred CCceeEEEeecCCC
Q 020297 290 GSVGMRIQYSKNPF 303 (328)
Q Consensus 290 ~~~~l~V~~ak~~~ 303 (328)
++|+|+.+-++.
T Consensus 140 --k~m~vq~stsrl 151 (346)
T KOG0109|consen 140 --KRMHVQLSTSRL 151 (346)
T ss_pred --ceeeeeeecccc
Confidence 999999976654
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=3.3e-26 Score=226.77 Aligned_cols=178 Identities=17% Similarity=0.281 Sum_probs=139.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeC-CCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFD-AETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~-~~~gr 118 (328)
...++|||+||+.++|+++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|+|..+. ...|+
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~f----G~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~ 251 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKF----GEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK 251 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhc----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccce
Confidence 345789999999999999999999999 7664431 23699999999999999999999999985 12268
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|.|.++..+....... ..+..... .
T Consensus 252 ~l~v~~a~~k~er~~~~---------~~~~~~~~--~------------------------------------------- 277 (562)
T TIGR01628 252 KLYVGRAQKRAEREAEL---------RRKFEELQ--Q------------------------------------------- 277 (562)
T ss_pred eeEeecccChhhhHHHH---------HhhHHhhh--h-------------------------------------------
Confidence 88888876553321100 00000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~ 275 (328)
........++|||+||+..+|+++|+++|++||.|.+++|+.+.. +|||||+|.+.++|.
T Consensus 278 -----------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~ 340 (562)
T TIGR01628 278 -----------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEAN 340 (562)
T ss_pred -----------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHH
Confidence 000011257899999999999999999999999999999987642 899999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
+|++.|||+.|+| ++|+|.|++.+
T Consensus 341 ~A~~~~~g~~~~g---k~l~V~~a~~k 364 (562)
T TIGR01628 341 RAVTEMHGRMLGG---KPLYVALAQRK 364 (562)
T ss_pred HHHHHhcCCeeCC---ceeEEEeccCc
Confidence 9999999999999 99999999865
No 16
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=194.97 Aligned_cols=270 Identities=20% Similarity=0.256 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcC
Q 020297 33 PPPVPYDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQE 109 (328)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~~~kg~aFV~F~~~~~A~~A~~~l~g 109 (328)
+..+.+...++.. .+.|+||||.|...-.|||++++|..|+..+.+.+-. ..+||||||.|.+..+|..||+.|+|
T Consensus 4 piqvkpadsesrg-~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 4 PIQVKPADSESRG-GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred CccccccccccCC-ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcc
Confidence 3344444444322 2578999999999999999999999993332222211 24589999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEcccccc--cccccccC---Cccccc------------------------cccc------------
Q 020297 110 MIFDAETKSVLHTEMAKKNLF--VKRGIVAD---TNAYDQ------------------------SKRL------------ 148 (328)
Q Consensus 110 ~~~~~~~gr~l~v~~a~~~~~--~~~~~~~~---~~~~~~------------------------~~~~------------ 148 (328)
.....+....|.|+|+..... .+|-+++- +...+. ....
T Consensus 83 SqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~ 162 (371)
T KOG0146|consen 83 SQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQ 162 (371)
T ss_pred cccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHH
Confidence 988776678999999976543 22221110 000000 0000
Q ss_pred ----------cCCCCCC-C-CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCC
Q 020297 149 ----------RTGGDYT-H-TGYSAPSPFH----APPAPVWGPHGYMAPPPPPY----------DPYGGYGVPPVQMPAP 202 (328)
Q Consensus 149 ----------~~~~~~~-~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 202 (328)
.....-. + .+..++.... ..-.+..+.+++..-++.+. +....|+...+....+
T Consensus 163 mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~ 242 (371)
T KOG0146|consen 163 MQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADP 242 (371)
T ss_pred HHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccch
Confidence 0000000 0 0000000000 00011122222221111111 1222232222222111
Q ss_pred CCC----------CCCCCCCCC------------CCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-
Q 020297 203 APV----------PAPSSYVPV------------QNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE- 259 (328)
Q Consensus 203 ~~~----------~~~~~~~~~------------~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~- 259 (328)
... ..++.+.+. +-...++.+++|||..||.+..+.||...|-.||.|++.++.-++
T Consensus 243 lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA 322 (371)
T KOG0146|consen 243 LQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA 322 (371)
T ss_pred hhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc
Confidence 000 001111110 112357789999999999999999999999999999999986543
Q ss_pred ---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCCC
Q 020297 260 ---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306 (328)
Q Consensus 260 ---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~~ 306 (328)
+|.||||.|++..+|+.||.+|||+.|+. ++|||++.|++.++|
T Consensus 323 TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM---KRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 323 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM---KRLKVQLKRPKDANR 369 (371)
T ss_pred cccccceeeEecCCchhHHHHHHHhcchhhhh---hhhhhhhcCccccCC
Confidence 38999999999999999999999999999 999999999997665
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.9e-26 Score=193.03 Aligned_cols=168 Identities=18% Similarity=0.323 Sum_probs=142.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e--CC-cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GE-KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~--~~-kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
+...+|.|.-||..+|+||||.||..++.+|.|-+.. + +. -|||||.|.++++|++|+..|||..+. .++|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cceEEE
Confidence 4456799999999999999999999995444443222 1 22 299999999999999999999999999 699999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|+++.+..++
T Consensus 116 SyARPSs~~Ik--------------------------------------------------------------------- 126 (360)
T KOG0145|consen 116 SYARPSSDSIK--------------------------------------------------------------------- 126 (360)
T ss_pred EeccCChhhhc---------------------------------------------------------------------
Confidence 99988766554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHH
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al 278 (328)
..+|||.+||..+|..||.++|++||.|..-+|..+. .||+|||+|..+.+|+.||
T Consensus 127 --------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 127 --------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred --------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 3569999999999999999999999999887775433 3999999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCCCCCCC
Q 020297 279 HNLQGAVIPSSGSVGMRIQYSKNPFGKRK 307 (328)
Q Consensus 279 ~~lnG~~i~g~~~~~l~V~~ak~~~~~~~ 307 (328)
..|||..-.|.. -+|.|.|+.++..++.
T Consensus 187 k~lNG~~P~g~t-epItVKFannPsq~t~ 214 (360)
T KOG0145|consen 187 KGLNGQKPSGCT-EPITVKFANNPSQKTN 214 (360)
T ss_pred HhccCCCCCCCC-CCeEEEecCCcccccc
Confidence 999999888754 4999999998855543
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=6e-26 Score=183.20 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=137.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.....||||+||+..++++-|.+||-.. |.|+.++ ..+|||||+|.+.|+|+.|++.||.+.++ |
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---g 78 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---G 78 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---C
Confidence 3567899999999999999999999999 9987774 13599999999999999999999999999 9
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
|+|+|.-+... ...
T Consensus 79 rpIrv~kas~~-~~n----------------------------------------------------------------- 92 (203)
T KOG0131|consen 79 RPIRVNKASAH-QKN----------------------------------------------------------------- 92 (203)
T ss_pred ceeEEEecccc-ccc-----------------------------------------------------------------
Confidence 99999866410 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEEecCC----cceEEEEEccHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM-KVLRQER----HTVCFIEFEDVN 272 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v-~i~~~~~----~g~aFV~F~~~~ 272 (328)
...+.+|||+||.+.++|..|.++|+.||.|... +|+++.. ++||||.|.+.+
T Consensus 93 ----------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 93 ----------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ----------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 0013679999999999999999999999987653 5554433 889999999999
Q ss_pred HHHHHHHHhCCCeeCCCCCceeEEEeecCCCCCC
Q 020297 273 SASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306 (328)
Q Consensus 273 ~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~~ 306 (328)
.+.+|+..|||.-+.. ++|.|+|++.+.++.
T Consensus 151 asd~ai~s~ngq~l~n---r~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCN---RPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHHHhccchhcC---CceEEEEEEecCCCc
Confidence 9999999999999998 999999998775554
No 19
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.93 E-value=9.9e-25 Score=182.85 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=152.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHH----HHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQN----LLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~----~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..++.||||.||++.+..++|++ ||+.| |.|+.+. .+||.|||.|.+.+.|..|+.+|+|+.|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--- 78 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY--- 78 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc---
Confidence 34577999999999999999999 88888 9887663 34699999999999999999999999999
Q ss_pred CCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 117 KSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPP 196 (328)
Q Consensus 117 gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (328)
|+.++|.||+++++..... .+...+..++.+..+..... .+....+....+. .
T Consensus 79 gK~mriqyA~s~sdii~~~--~~~~v~~~~k~~~~~~~~~~----------~~~~~ng~~~~~~---------------~ 131 (221)
T KOG4206|consen 79 GKPMRIQYAKSDSDIIAQA--PGTFVEKEKKINGEILARIK----------QPLDTNGHFYNMN---------------R 131 (221)
T ss_pred CchhheecccCccchhhcc--CceeccccCccccccccccC----------Ccccccccccccc---------------c
Confidence 8999999999998855432 23444444432222211111 0000111100000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHH
Q 020297 197 VQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276 (328)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~ 276 (328)
... ++.......+++.+||+.|||..++.+.|..+|++|...++++++. ..++.|||+|.+...|..
T Consensus 132 ~~~------------p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~ 198 (221)
T KOG4206|consen 132 MNL------------PPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASA 198 (221)
T ss_pred ccC------------CCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHH
Confidence 000 0000123345689999999999999999999999999999999995 567999999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEeec
Q 020297 277 VHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 277 Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
|.+.|+|..|-- ++.|+|.|++
T Consensus 199 a~~~lq~~~it~--~~~m~i~~a~ 220 (221)
T KOG4206|consen 199 AQQALQGFKITK--KNTMQITFAK 220 (221)
T ss_pred Hhhhhccceecc--CceEEecccC
Confidence 999999999984 2799999976
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.6e-25 Score=185.82 Aligned_cols=220 Identities=15% Similarity=0.200 Sum_probs=144.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..+|||++||..+|..||+.+|++| |.||.-+ -+||.|||.|...++|+.||..|||..=. ++-.+|
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-g~tepI 201 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-GCTEPI 201 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-CCCCCe
Confidence 5679999999999999999999999 8775432 24799999999999999999999998763 235899
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (328)
.|.|+..-+......- .... +..+......+.|....... .. ..+++......+++--..+
T Consensus 202 tVKFannPsq~t~~a~-ls~l------------y~sp~rr~~Gp~hh~~~r~r--~~---~~~~~~~~~~rfsP~~~d~- 262 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQAL-LSQL------------YQSPARRYGGPMHHQAQRFR--LD---NLLNPHAAQARFSPMTIDG- 262 (360)
T ss_pred EEEecCCcccccchhh-hHHh------------hcCccccCCCcccchhhhhc--cc---cccchhhhhccCCCccccc-
Confidence 9999976532111000 0000 00000000111111000000 00 0001111111111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHH
Q 020297 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASS 276 (328)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~ 276 (328)
.+.............+=.|||.||.++.+|.-|..+|++||.|..|+|+++.. ||||||++.+.++|..
T Consensus 263 -------m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAam 335 (360)
T KOG0145|consen 263 -------MSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 335 (360)
T ss_pred -------cceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHH
Confidence 00001111111122245799999999999999999999999999999998766 9999999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 277 VHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 277 Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
||..|||+.+++ |.|.|+|.-++
T Consensus 336 Ai~sLNGy~lg~---rvLQVsFKtnk 358 (360)
T KOG0145|consen 336 AIASLNGYRLGD---RVLQVSFKTNK 358 (360)
T ss_pred HHHHhcCccccc---eEEEEEEecCC
Confidence 999999999999 99999997665
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.4e-24 Score=210.16 Aligned_cols=183 Identities=18% Similarity=0.187 Sum_probs=132.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---e-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
+..++|||+|||..+++++|+++|+.| |.|..+ + ..+|||||+|.+.++|..|++.|+|+.|+ |+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~ 365 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DN 365 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 457899999999999999999999999 665332 1 24699999999999999999999999998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|.|.++.............+ ... ....
T Consensus 366 ~l~v~~a~~~~~~~~~~~~~~--------------------~~~--~~~~------------------------------ 393 (509)
T TIGR01642 366 KLHVQRACVGANQATIDTSNG--------------------MAP--VTLL------------------------------ 393 (509)
T ss_pred EEEEEECccCCCCCCcccccc--------------------ccc--cccc------------------------------
Confidence 999999864422110000000 000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCC--C--------CHHHHHHHhccCCCeeEEEEEecC-------Cc
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGES--I--------NEEELRGLFSAQPGFKQMKVLRQE-------RH 261 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~--~--------te~~L~~~F~~~G~i~~v~i~~~~-------~~ 261 (328)
..............++.+|+|.||... + ..++|+++|++||.|+.|+|.++. ++
T Consensus 394 ---------~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~ 464 (509)
T TIGR01642 394 ---------AKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGV 464 (509)
T ss_pred ---------cccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCc
Confidence 000000000011234688999999632 1 126789999999999999998641 26
Q ss_pred ceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
|++||+|.+.++|++||..|||..|.| +.|.|.|..
T Consensus 465 G~~fV~F~~~e~A~~A~~~lnGr~~~g---r~v~~~~~~ 500 (509)
T TIGR01642 465 GKVFLEYADVRSAEKAMEGMNGRKFND---RVVVAAFYG 500 (509)
T ss_pred ceEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEeC
Confidence 899999999999999999999999999 999999953
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7e-24 Score=196.16 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=143.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
+.-+|+|+|||+.+.+++|+.+|+.| |.++.+. .++|||||+|.+..+|.+|++.+||..|+ ||++
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---gR~V 188 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNF----GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---GRPV 188 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhc----ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec---Ccee
Confidence 35689999999999999999999999 9997763 23599999999999999999999999999 9999
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYS-----APSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVP 195 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (328)
.|+||..+..-......+....-...+............. ..+.-+..-....++...... ......-
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee-------~~~~Eee 261 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEE-------GEESEEE 261 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhc-------ccccccc
Confidence 9999987754222111000000000000000000000000 000000000000000000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEE
Q 020297 196 PVQMPAPAPVPAPSSYVPVQ---NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEF 268 (328)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F 268 (328)
.........+.........+ ..++..-..+|||+||++++|+++|...|++||.|.++.|+.++. +|+|||.|
T Consensus 262 ~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F 341 (678)
T KOG0127|consen 262 EDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF 341 (678)
T ss_pred ccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe
Confidence 00000000000000000011 122333468999999999999999999999999999999986654 89999999
Q ss_pred ccHHHHHHHHHHh-----CC-CeeCCCCCceeEEEeec
Q 020297 269 EDVNSASSVHHNL-----QG-AVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 269 ~~~~~A~~Al~~l-----nG-~~i~g~~~~~l~V~~ak 300 (328)
.+..+|+.||.+. .| ..|.| |.|+|..+-
T Consensus 342 kt~~~~~~ci~~Aspa~e~g~~ll~G---R~Lkv~~Av 376 (678)
T KOG0127|consen 342 KTQIAAQNCIEAASPASEDGSVLLDG---RLLKVTLAV 376 (678)
T ss_pred ccHHHHHHHHHhcCccCCCceEEEec---cEEeeeecc
Confidence 9999999999987 34 67888 999998864
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.8e-23 Score=201.02 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=138.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.++|||+|||..+|+++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~~i 258 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA---GRPI 258 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC---CEEE
Confidence 7899999999999999999999999 7764331 23699999999999999999999999998 8999
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC---CC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPY--DPYGGYG---VP 195 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~ 195 (328)
+|.|+.......... .................. .... .+ ......++..+....++... ..+..+. ..
T Consensus 259 ~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (457)
T TIGR01622 259 KVGYAQDSTYLLDAA---NTFEDIDKQQQMGKNLNT--EERE-QL-MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGII 331 (457)
T ss_pred EEEEccCCCccccch---hhhccccccccCCcCCCc--cchH-HH-HHhhccCCCCccccCCCccchhhhhccccccccc
Confidence 999987332211100 000000000000000000 0000 00 00000000000000000000 0000000 00
Q ss_pred CCCCCC-CCCCCCCCCCC--CCCCCCCCCCCCeEEEeCCCCCCC----------HHHHHHHhccCCCeeEEEEEecCCcc
Q 020297 196 PVQMPA-PAPVPAPSSYV--PVQNTKDNPPCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERHT 262 (328)
Q Consensus 196 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~LfV~NL~~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~g 262 (328)
....+. +.......... .........+.++|+|.||-...+ .++|++.|++||.|+.|.|......|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G 411 (457)
T TIGR01622 332 DPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAG 411 (457)
T ss_pred cccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCce
Confidence 000000 00000000000 000111234578999999965544 36899999999999999998666789
Q ss_pred eEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 263 VCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 263 ~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
++||+|.+.++|.+|++.|||+.|+| +.|.|.|..
T Consensus 412 ~~fV~F~~~e~A~~A~~~lnGr~f~g---r~i~~~~~~ 446 (457)
T TIGR01622 412 KIYLKFSSVDAALAAFQALNGRYFGG---KMITAAFVV 446 (457)
T ss_pred eEEEEECCHHHHHHHHHHhcCcccCC---eEEEEEEEc
Confidence 99999999999999999999999999 999999964
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.9e-24 Score=198.66 Aligned_cols=184 Identities=17% Similarity=0.276 Sum_probs=142.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-eC---CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~~---~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
.||||++||++++.++|.++|+.++.+-++++.- ++ .||||||.|.-.+++++|++.+++..|. ||.|+|+++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~---Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE---GRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc---ceecccccc
Confidence 7999999999999999999999996666665443 22 3699999999999999999999999998 999999999
Q ss_pred ccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (328)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
+........ +.+......+......
T Consensus 83 ~~R~r~e~~---~~~e~~~veK~~~q~~---------------------------------------------------- 107 (678)
T KOG0127|consen 83 KKRARSEEV---EKGENKAVEKPIEQKR---------------------------------------------------- 107 (678)
T ss_pred cccccchhc---ccccchhhhcccccCC----------------------------------------------------
Confidence 765433210 0000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhC
Q 020297 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~ln 282 (328)
..-.....+.-+|.|+|||+.|.+.+|..+|++||.|.+|.|.+..+ +|||||+|.+..+|.+||+.||
T Consensus 108 --------~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N 179 (678)
T KOG0127|consen 108 --------PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFN 179 (678)
T ss_pred --------cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhcc
Confidence 00000111245799999999999999999999999999999976554 8999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020297 283 GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~~ 302 (328)
|.+|.| |+|.|.|+-.+
T Consensus 180 ~~~i~g---R~VAVDWAV~K 196 (678)
T KOG0127|consen 180 GNKIDG---RPVAVDWAVDK 196 (678)
T ss_pred CceecC---ceeEEeeeccc
Confidence 999999 99999998765
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=188.88 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
.++.+..|||++||.+.-+.+|...|..||.|++.++.-++- +.|+||.|++..+|..||..|||+.|++ ++|
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~---Krl 496 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGS---KRL 496 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcc---ccc
Confidence 466788999999999999999999999999999999865443 8899999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020297 295 RIQYSKNP 302 (328)
Q Consensus 295 ~V~~ak~~ 302 (328)
+|+..+.+
T Consensus 497 kVQlk~~~ 504 (510)
T KOG0144|consen 497 KVQLKRDR 504 (510)
T ss_pred eEEeeecc
Confidence 99998866
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=186.15 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=134.1
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----eC-------CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY----KG-------EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~~-------~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
|||+||++++|.++|..+|... |.|+.+ +. +.|||||+|.+.++|+.|++.|+|+.++ |..|
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~l 590 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHKL 590 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---CceE
Confidence 9999999999999999999998 776444 21 1299999999999999999999999999 9999
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (328)
.|.++..+....- . ++
T Consensus 591 ~lk~S~~k~~~~~---------g--K~----------------------------------------------------- 606 (725)
T KOG0110|consen 591 ELKISENKPASTV---------G--KK----------------------------------------------------- 606 (725)
T ss_pred EEEeccCcccccc---------c--cc-----------------------------------------------------
Confidence 9999973211000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHH
Q 020297 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASS 276 (328)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~ 276 (328)
......++.|.|+|||+..+-.+++.+|+.||.|++|+|.... .+|||||+|.+..+|..
T Consensus 607 ----------------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 607 ----------------KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred ----------------cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 0001125789999999999999999999999999999996431 28999999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 277 VHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 277 Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
|+++|.+.-|.| |+|-++|++..
T Consensus 671 A~~al~STHlyG---RrLVLEwA~~d 693 (725)
T KOG0110|consen 671 AFDALGSTHLYG---RRLVLEWAKSD 693 (725)
T ss_pred HHHhhcccceec---hhhheehhccc
Confidence 999999999999 99999999864
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.6e-20 Score=174.51 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=128.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
..|||| .++||..|.+.|+.+ |.++.++ ++-|||||.|.+.++|++|++.||...+. |++++|-|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~----~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~---~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPA----GPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLK---GKPIRIMW 71 (369)
T ss_pred CceecC---CcCChHHHHHHhccc----CCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccC---CcEEEeeh
Confidence 369999 999999999999999 6664332 34499999999999999999999999998 89999999
Q ss_pred cccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (328)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (328)
+...
T Consensus 72 s~rd---------------------------------------------------------------------------- 75 (369)
T KOG0123|consen 72 SQRD---------------------------------------------------------------------------- 75 (369)
T ss_pred hccC----------------------------------------------------------------------------
Confidence 8422
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhC
Q 020297 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~ln 282 (328)
...|||.||+++++..+|.+.|+.||.|++|++.++.+ +|| ||+|.+.++|.+||..||
T Consensus 76 ------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 76 ------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 12299999999999999999999999999999988665 889 999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020297 283 GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~~ 302 (328)
|..+.+ +.|.|.....+
T Consensus 137 g~ll~~---kki~vg~~~~~ 153 (369)
T KOG0123|consen 137 GMLLNG---KKIYVGLFERK 153 (369)
T ss_pred CcccCC---CeeEEeeccch
Confidence 999999 89999887655
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6.7e-21 Score=168.79 Aligned_cols=165 Identities=12% Similarity=0.235 Sum_probs=133.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEe--e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY--K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~--~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
++||||.|.+.+.|+.||..|..| |.| |.| . ..||||||+|+-+|.|+.|++.|||..+. ||.|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PF----GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNiK 186 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIK 186 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCC----CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc---Ccccc
Confidence 789999999999999999999999 887 333 1 23699999999999999999999999998 89999
Q ss_pred EEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (328)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (328)
|..-.+-.... -.++..
T Consensus 187 VgrPsNmpQAQ-------piID~v-------------------------------------------------------- 203 (544)
T KOG0124|consen 187 VGRPSNMPQAQ-------PIIDMV-------------------------------------------------------- 203 (544)
T ss_pred ccCCCCCcccc-------hHHHHH--------------------------------------------------------
Confidence 97432110000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHH
Q 020297 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSV 277 (328)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~A 277 (328)
..+...-.+|||..++++++|+||+++|+.||+|++|.+.+... ||||||+|.+..+...|
T Consensus 204 ---------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 204 ---------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred ---------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 00011246899999999999999999999999999999987554 89999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeecCC
Q 020297 278 HHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 278 l~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
|..||=+.++| +-|||.-+--+
T Consensus 269 iasMNlFDLGG---QyLRVGk~vTP 290 (544)
T KOG0124|consen 269 IASMNLFDLGG---QYLRVGKCVTP 290 (544)
T ss_pred hhhcchhhccc---ceEecccccCC
Confidence 99999999999 89998776433
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=8.9e-19 Score=157.50 Aligned_cols=188 Identities=22% Similarity=0.293 Sum_probs=143.1
Q ss_pred cceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 49 VRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 49 ~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
+..|.|.||... +|.+.|..+|.-| |.|.+++ +.+-.|+|+|.|...|+.|++.|+|..|+ |+.|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvY----GdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVY----GDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhh----cceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec---CceEEEee
Confidence 688999999866 9999999999999 9997764 55689999999999999999999999999 89999999
Q ss_pred cccccc-cccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLF-VKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (328)
Q Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (328)
+|+..- .++....+.+. ..+ -..++++.-..++..
T Consensus 370 SKH~~vqlp~egq~d~gl-------------T~d--y~~spLhrfkkpgsK----------------------------- 405 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGL-------------TKD--YGNSPLHRFKKPGSK----------------------------- 405 (492)
T ss_pred ccCccccCCCCCCccccc-------------ccc--CCCCchhhccCcccc-----------------------------
Confidence 988753 22211111110 000 001111111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
+.....+++.+|.+.|+|.+++||+|+.+|..-|.. +..++. .+++.++.+++.+.|+|..|+..||
T Consensus 406 -----------N~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-~kd~kmal~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 406 -----------NYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-QKDRKMALPQLESVEEAIQALIDLH 473 (492)
T ss_pred -----------cccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-CCCcceeecccCChhHhhhhccccc
Confidence 112234568899999999999999999999999976 445554 5778999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecC
Q 020297 283 GAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~ 301 (328)
++.++++ .-|||+|+|+
T Consensus 474 nh~lgen--~hlRvSFSks 490 (492)
T KOG1190|consen 474 NHYLGEN--HHLRVSFSKS 490 (492)
T ss_pred cccCCCC--ceEEEEeecc
Confidence 9999995 6999999985
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=141.54 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=126.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCc---ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEK---PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~k---g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..++|||+|||.++.+.||++||.+| |.|..+ |+.. .||||+|++..+|+.||..-+|..++ |..|+|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC---cceEEE
Confidence 46899999999999999999999999 999554 5443 89999999999999999999999999 999999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
+|+..-....... +.. . .... ..++.-..-
T Consensus 78 Efprggr~s~~~~---G~y-------------~--gggr---------gGgg~gg~r----------------------- 107 (241)
T KOG0105|consen 78 EFPRGGRSSSDRR---GSY-------------S--GGGR---------GGGGGGGRR----------------------- 107 (241)
T ss_pred EeccCCCcccccc---ccc-------------C--CCCC---------CCCCCCccc-----------------------
Confidence 9986542111000 000 0 0000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
.++ .-....+|.|.+||.+-+|++|++.+...|.|+...+.++ |++.|+|...|+..-|+..|.
T Consensus 108 --------gpp-----srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 108 --------GPP-----SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred --------CCc-----ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhc
Confidence 000 0001357889999999999999999999999999999865 689999999999999999999
Q ss_pred CCeeCC
Q 020297 283 GAVIPS 288 (328)
Q Consensus 283 G~~i~g 288 (328)
...+..
T Consensus 172 ~~~~~s 177 (241)
T KOG0105|consen 172 DQKFRS 177 (241)
T ss_pred cccccC
Confidence 887765
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=6.8e-18 Score=164.39 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=65.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..++|||+||+.++++++|+++|+.| |.|..++ ..||||||+|++.++|.+|++.|||+.+. |+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg---Gr~ 275 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQY 275 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 45799999999999999999999999 7764431 24699999999999999999999999998 999
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|.++...
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999998754
No 32
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=1.7e-18 Score=155.65 Aligned_cols=214 Identities=21% Similarity=0.253 Sum_probs=142.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
.-+++|.|+-+-++.|-|..+|++| |.|+++. +..-.|+|+|.|.++|..|+.+|+|..|++ ..+.|+|+|
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~f----G~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyn-gcCtLrId~ 224 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKF----GFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYN-GCCTLRIDF 224 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhc----ceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccC-ceeEEEeeh
Confidence 4567899999999999999999999 9887773 444789999999999999999999999976 237999999
Q ss_pred cccccc-cccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLF-VKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (328)
Q Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (328)
++...- .+.. ..|...-..-..+.+...+ .......+..+ ..+...+ .
T Consensus 225 Sklt~LnvKyn---------ndkSRDyTnp~LP~gd~~p-~l~~~~~aa~~------------------~~~~~~g---~ 273 (492)
T KOG1190|consen 225 SKLTDLNVKYN---------NDKSRDYTNPDLPVGDGQP-SLDQLMAAAFG------------------SVPAVHG---A 273 (492)
T ss_pred hhcccceeecc---------ccccccccCCCCCCCcccc-ccchhhhcccc------------------ccccccC---C
Confidence 987542 2210 0010000000000110000 00000000010 0000000 0
Q ss_pred CCCCCCCCCCCC---CCCCCC-CCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHH
Q 020297 204 PVPAPSSYVPVQ---NTKDNP-PCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 204 ~~~~~~~~~~~~---~~~~~~-~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al 278 (328)
+...+....... .....+ .+..|.|.||.. .+|.+.|..+|+.||+|.+|+|+.+ ++.-|.|+|.|...|+.|+
T Consensus 274 p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~ 352 (492)
T KOG1190|consen 274 PLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAM 352 (492)
T ss_pred cccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHH
Confidence 000000000000 000011 268889999987 5899999999999999999999964 4588999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020297 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 279 ~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
..|+|.+|.| ++|+|.|+|..
T Consensus 353 ~hL~g~~l~g---k~lrvt~SKH~ 373 (492)
T KOG1190|consen 353 EHLEGHKLYG---KKLRVTLSKHT 373 (492)
T ss_pred HHhhcceecC---ceEEEeeccCc
Confidence 9999999999 99999999875
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=2.2e-19 Score=167.27 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=137.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
+-..||||+-.|...+++-+|.++|+.+ |.|..++ ..||.|+|+|.|.++...|+. |.|..+. |
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~----gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrll---g 247 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIV----GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLL---G 247 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhh----cCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCccc---C
Confidence 3458999999999999999999999999 8773331 346999999999999999995 9999998 8
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
.+|.|.......+..+.. . .+.
T Consensus 248 ~pv~vq~sEaeknr~a~~---s--------------------------------~a~----------------------- 269 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANA---S--------------------------------PAL----------------------- 269 (549)
T ss_pred ceeEecccHHHHHHHHhc---c--------------------------------ccc-----------------------
Confidence 999998654332211100 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNS 273 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~ 273 (328)
....-..+-..|||+||++++++++|+.+|+.||.|+.|.+..+. .+|||||+|.+.++
T Consensus 270 -----------------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 270 -----------------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred -----------------cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 000000112349999999999999999999999999999998764 29999999999999
Q ss_pred HHHHHHHhCCCeeCCCCCceeEEEeecCCCCCC
Q 020297 274 ASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306 (328)
Q Consensus 274 A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~~ 306 (328)
|.+|+..|||++|-| +.|+|+..-.+....
T Consensus 333 ar~a~e~lngfelAG---r~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 333 ARKALEQLNGFELAG---RLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHhccceecC---ceEEEEEeeeecccc
Confidence 999999999999999 999999876554443
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.3e-18 Score=148.87 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..-+||+.|...++.|.||+.|.+||+|.+++|++|.. ||||||.|.++++|+.||+.|||.=|++ |.||-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~---R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR---RTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc---ceeeccc
Confidence 34599999999999999999999999999999998764 9999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+-.|
T Consensus 139 ATRK 142 (321)
T KOG0148|consen 139 ATRK 142 (321)
T ss_pred cccC
Confidence 8544
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.5e-18 Score=158.91 Aligned_cols=159 Identities=19% Similarity=0.344 Sum_probs=134.0
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
|||.||+.+++.++|.++|+.| |.|+.++ ++||| ||+|++.++|.+|++.|||..+. |+.+.|...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~---~kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN---GKKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC---CCeeEEeec
Confidence 9999999999999999999999 8886664 56899 99999999999999999999998 799999876
Q ss_pred ccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (328)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
..+..+.+...
T Consensus 151 ~~~~er~~~~~--------------------------------------------------------------------- 161 (369)
T KOG0123|consen 151 ERKEEREAPLG--------------------------------------------------------------------- 161 (369)
T ss_pred cchhhhccccc---------------------------------------------------------------------
Confidence 55433221000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhC
Q 020297 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~ln 282 (328)
. ....-+.+||.|+..++++++|.+.|..||.|.++.++.+.. ++|+||.|.+.++|..|+..||
T Consensus 162 -----------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 162 -----------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred -----------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 0 000135699999999999999999999999999999987543 8999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020297 283 GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~~ 302 (328)
|..+.+ ..|.|.-+..+
T Consensus 230 ~~~~~~---~~~~V~~aqkk 246 (369)
T KOG0123|consen 230 GKIFGD---KELYVGRAQKK 246 (369)
T ss_pred CCcCCc---cceeecccccc
Confidence 999998 78888776653
No 36
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.76 E-value=2.7e-16 Score=140.10 Aligned_cols=231 Identities=19% Similarity=0.254 Sum_probs=150.8
Q ss_pred CCCcceEEEcCCC--CcCCHHHHHHHHHhCCCCcccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC-Ce
Q 020297 46 HDEVRTIFITGLP--DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK-SV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp--~~~te~~L~~~f~~~~~~~g~i~~~---~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g-r~ 119 (328)
..+++.|++.=|. +.+|.+.|..++... |.|+++ +.+--.|.|+|++.+.|++|+++|||.+|+. | ++
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYs--GCCT 190 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYS--GCCT 190 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccc--ccee
Confidence 3557888877666 568999988888888 888665 4444789999999999999999999999986 4 79
Q ss_pred EEEEEcccccccccccccCCccccccccc-cCCCCCCC-CCCCCCCCCCCCCCCCCCC--CCC-----CCCC-CCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRL-RTGGDYTH-TGYSAPSPFHAPPAPVWGP--HGY-----MAPP-PPPYDPY 189 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~-----~~~~-~~~~~~~ 189 (328)
|+|+|||...-.-.....+.|++...... ....+... +....+......+ ..|+. .+| .-|+ ++|..-.
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~p-ss~~G~h~~y~sg~~~~p~~~~P~r~~ 269 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHP-SSRGGGHSGYYSGDRHGPPHPPPSRYR 269 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCCh-hhcCCCCCCCcccccCCCCCCCCCCCc
Confidence 99999998764222222344554332211 11111111 1111111111111 11221 111 1111 1111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEE
Q 020297 190 GGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEF 268 (328)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F 268 (328)
..+-.. ... .......++..+-|.+|+. .++.+.|.++|+.||.|+.|++++ ...|.|.|++
T Consensus 270 ~~~~~~-------------~g~---a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVem 332 (494)
T KOG1456|consen 270 DGYRDG-------------RGY---ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEM 332 (494)
T ss_pred cccccC-------------CCC---CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEc
Confidence 000000 000 0113344578899999997 589999999999999999999996 4569999999
Q ss_pred ccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020297 269 EDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 269 ~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~ 303 (328)
.|..+.++|+..|||..+.| .+|.|.++|...
T Consensus 333 gd~~aver~v~hLnn~~lfG---~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 333 GDAYAVERAVTHLNNIPLFG---GKLNVCVSKQNF 364 (494)
T ss_pred CcHHHHHHHHHHhccCcccc---ceEEEeeccccc
Confidence 99999999999999999999 899999988653
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.6e-17 Score=133.04 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+||+++++|++|+++|++||.|++++|+.+. .+|||||+|.+.++|+.||+.|||..|.| +.|+|.|
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G---r~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG---RHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEe
Confidence 6789999999999999999999999999999998654 38999999999999999999999999999 9999999
Q ss_pred ecCCC
Q 020297 299 SKNPF 303 (328)
Q Consensus 299 ak~~~ 303 (328)
++.+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97653
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.1e-16 Score=151.27 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=133.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-CCcc-eEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEKP-MGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-~~kg-~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.+.++|+|||..+..++|..+|.+| |.|.++- ..-| .++|+|.+..+|++|...|....+. ..+|.+.|+.
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~f----G~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k---~~plyle~aP 457 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRF----GEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFK---SAPLYLEWAP 457 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcc----cccceeecCcccceeeeeecCccchHHHHHHhchhhhc---cCccccccCh
Confidence 5779999999999999999999999 7774441 1223 4999999999999999999999997 4788888875
Q ss_pred cccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (328)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (328)
........+ ............. ...+..... ...+........
T Consensus 458 ~dvf~~~pk---a~~~~~e~~~~~e--------e~~~Er~s~--------------------------~d~~v~eD~d~t 500 (725)
T KOG0110|consen 458 EDVFTEDPK---ADDLSAESRSKME--------ENPSERVSA--------------------------EDGQVEEDKDPT 500 (725)
T ss_pred hhhccCCcc---ccccccccccccc--------cCcceeccc--------------------------ccccccccCCcc
Confidence 432211000 0000000000000 000000000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-------cceEEEEEccHHHHHHHHH
Q 020297 207 APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHH 279 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~ 279 (328)
..++.. .....-...++|||.||.++++.++|..+|..+|.|+++.|...++ .|||||+|.+.++|+.|++
T Consensus 501 e~ss~a--~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k 578 (725)
T KOG0110|consen 501 EESSLA--RVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALK 578 (725)
T ss_pred ccccch--hhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHH
Confidence 000000 0000111123399999999999999999999999999998865443 4999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeec
Q 020297 280 NLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 280 ~lnG~~i~g~~~~~l~V~~ak 300 (328)
.|+|+.|+| +.|.|.++.
T Consensus 579 ~lqgtvldG---H~l~lk~S~ 596 (725)
T KOG0110|consen 579 ALQGTVLDG---HKLELKISE 596 (725)
T ss_pred HhcCceecC---ceEEEEecc
Confidence 999999999 999999998
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=6.7e-17 Score=137.15 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=128.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccccc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~~ 129 (328)
.++||++||+.+.+.+|.++|..| |.+..+....||+||+|.|..+|..|+..|||..|. |..+.|+|++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y----g~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY----GKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELC---GERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc----cccccceeecccceeccCchhhhhcccchhcCceec---ceeeeeecccccc
Confidence 469999999999999999999999 988666555599999999999999999999999998 6668999986431
Q ss_pred ccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (328)
.-. +. ..++.... | ... +.
T Consensus 75 ~~~------g~---------------~~~g~r~~---------~-~~~--------------~~---------------- 93 (216)
T KOG0106|consen 75 RGR------GR---------------PRGGDRRS---------D-SRR--------------YR---------------- 93 (216)
T ss_pred ccc------CC---------------CCCCCccc---------h-hhc--------------cC----------------
Confidence 100 00 00000000 0 000 00
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
......+.|+|.|+.-.+.+.+|.+.|+++|.+.++.++ .+++||+|...++|.+|+..|+|..+.+
T Consensus 94 --------~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~----~~~~~v~Fs~~~da~ra~~~l~~~~~~~- 160 (216)
T KOG0106|consen 94 --------PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR----RNFAFVEFSEQEDAKRALEKLDGKKLNG- 160 (216)
T ss_pred --------CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh----ccccceeehhhhhhhhcchhccchhhcC-
Confidence 000125789999999999999999999999999666663 4899999999999999999999999999
Q ss_pred CCceeEEEe
Q 020297 290 GSVGMRIQY 298 (328)
Q Consensus 290 ~~~~l~V~~ 298 (328)
+.|.+.+
T Consensus 161 --~~l~~~~ 167 (216)
T KOG0106|consen 161 --RRISVEK 167 (216)
T ss_pred --ceeeecc
Confidence 8999944
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.66 E-value=3.8e-16 Score=140.71 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=128.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||++|++++++|.|++.|..| |.|+.+. ..+||+||+|.+.+...+++. ..-+.++ |+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~----Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~d---gr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQF----GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLD---GRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhccc----CceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccC---Ccc
Confidence 67899999999999999999999999 6664432 235999999999999999886 4445566 788
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
+.+.-+.+........
T Consensus 77 ve~k~av~r~~~~~~~---------------------------------------------------------------- 92 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVG---------------------------------------------------------------- 92 (311)
T ss_pred ccceeccCcccccccc----------------------------------------------------------------
Confidence 8887665543211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~ 275 (328)
.......+||+.|+.++++++|++.|.+||.|..+.++.+.. ++|+||.|.++++..
T Consensus 93 -------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 93 -------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred -------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 000257899999999999999999999999998888876554 899999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCCCCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~ 305 (328)
+++. ..-+.|.+ +.+.|.-+-++...
T Consensus 154 kv~~-~~f~~~~g---k~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 154 KVTL-QKFHDFNG---KKVEVKRAIPKEVM 179 (311)
T ss_pred eecc-cceeeecC---ceeeEeeccchhhc
Confidence 9876 68888998 88888887766444
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.7e-16 Score=109.06 Aligned_cols=67 Identities=34% Similarity=0.577 Sum_probs=62.8
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 226 LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
|||+|||.++|+++|+++|++||.|..+++..+. .+++|||+|.+.++|.+|++.|||..|.| +.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~---~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING---RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc---cCcC
Confidence 7999999999999999999999999999998752 28899999999999999999999999999 8886
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.64 E-value=1.9e-14 Score=130.69 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=138.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCC-CcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPG-YEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~-~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
..|.+||.|||+++.|.+|++||.+..+ ++-+.+-+. ..||||.|+|+++|.+++|++.||.+.+. ||+|.|.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l~vK 119 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GRELVVK 119 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceEEEe
Confidence 4677999999999999999999997732 222223332 24699999999999999999999999998 9999997
Q ss_pred Ecccccccccccc-cCCc-cccccccccC-CCCCCCCCCC------CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 124 MAKKNLFVKRGIV-ADTN-AYDQSKRLRT-GGDYTHTGYS------APSPFHAP-PAPVWGPHGYMAPPPPPYDPYGGYG 193 (328)
Q Consensus 124 ~a~~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (328)
=.......++.+. .++. .+...-..+. .......... ........ .....+...+... .+....|.
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~----~~~~~~~~ 195 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSND----YNNSSNYN 195 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccc----cccchhhh
Confidence 5433221111110 0110 0000000000 0000000000 00000000 0000000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEcc
Q 020297 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFED 270 (328)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~ 270 (328)
.-.- ...+-.......+|-...+||.||...+..+.|++.|.-.|.|..|.+--++. +||+.++|.+
T Consensus 196 lfgl----------~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~h 265 (608)
T KOG4212|consen 196 LFGL----------SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDH 265 (608)
T ss_pred cccc----------hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecc
Confidence 0000 00000000012333467899999999999999999999999999998855443 8999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 271 VNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 271 ~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.-.|..||..|++..+.. +++.+.+.+.+
T Consensus 266 pveavqaIsml~~~g~~~---~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 266 PVEAVQAISMLDRQGLFD---RRMTVRLDRIP 294 (608)
T ss_pred hHHHHHHHHhhccCCCcc---ccceeeccccc
Confidence 999999999999977777 88888886655
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.6e-15 Score=140.40 Aligned_cols=81 Identities=17% Similarity=0.396 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
.....++|||+||+.++||++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|++||+.|||..|.+ ++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---cee
Confidence 445679999999999999999999999999999999986543 7999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020297 295 RIQYSKNP 302 (328)
Q Consensus 295 ~V~~ak~~ 302 (328)
+|.|++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998764
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=5.2e-15 Score=120.37 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
.....++|||+||+.+++|++|+++|+.| |.|..++ ..||||||+|++.++|++|++.||+..|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--- 102 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--- 102 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 34568899999999999999999999999 7764431 23699999999999999999999999998
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
|+.|+|+|++.+.
T Consensus 103 Gr~l~V~~a~~~~ 115 (144)
T PLN03134 103 GRHIRVNPANDRP 115 (144)
T ss_pred CEEEEEEeCCcCC
Confidence 8999999997543
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=2.7e-15 Score=140.13 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=127.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE----EEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i----~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+-++||||||.+++++++|+..|+.| |.| +.+. ..||||||+|.+.++|++|++.|||+.+- |+
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA---Gr 348 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA---GR 348 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCc----ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---Cc
Confidence 345559999999999999999999999 666 2222 23699999999999999999999998887 99
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCCCC-C
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPA-PVWGPHGYMAPPPPPY-DPYGGYGV-P 195 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~ 195 (328)
.|+|.........+... ....+.. ........-+..+ ..+... -..+.........-.. ........ .
T Consensus 349 ~ikV~~v~~r~~~~~a~---~~~~d~D---~~d~~gl~~~~~g---~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~ 419 (549)
T KOG0147|consen 349 LIKVSVVTERVDTKEAA---VTQFDFD---EDDRQGLSLGSGG---RNQLMAKLAEGKGRSLPSTAISALLLLAKLASAA 419 (549)
T ss_pred eEEEEEeeeeccccccc---ccccccc---hhhcccccccccc---HHHHHHHHhccCCccccchhhhHHHhccccchHH
Confidence 99998654433221100 0000000 0000000000000 000000 0000000000000000 00000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCC----------HHHHHHHhccCCCeeEEEEEecCCcceEE
Q 020297 196 PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERHTVCF 265 (328)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~g~aF 265 (328)
+..+-.......++. ..+... .++..|.+.|+=..-| .|++.+.+.+||.|..|.+..+ .-||.|
T Consensus 420 ~~~~~~~~~~~~p~~---~~p~~~-i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VY 494 (549)
T KOG0147|consen 420 QFNGVVRVRSVDPAD---ASPAFD-IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVY 494 (549)
T ss_pred hhcCCcCccccCccc---cccccC-CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEE
Confidence 000000000000000 011111 3344556666543222 2567777899999999988643 349999
Q ss_pred EEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 266 IEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 266 V~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
|.|.+.+.|..|+++|||.=|.| +.|.+.|-
T Consensus 495 vrc~s~~~A~~a~~alhgrWF~g---r~Ita~~~ 525 (549)
T KOG0147|consen 495 VRCPSAEAAGTAVKALHGRWFAG---RMITAKYL 525 (549)
T ss_pred EecCcHHHHHHHHHHHhhhhhcc---ceeEEEEe
Confidence 99999999999999999999999 99999984
No 46
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=2.1e-15 Score=141.16 Aligned_cols=77 Identities=18% Similarity=0.406 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++++++|+++|++||.|.+|+|++++ .+|||||+|.+.++|.+||+.|||..|.| +.|+|.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g---~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN---KTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC---eeEEEEe
Confidence 5799999999999999999999999999999998764 37899999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++++
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 9866
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=6e-14 Score=124.30 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=134.4
Q ss_pred CCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE------EEee-----CCcceEEEEeCCHHHHHHHHHHhcCce
Q 020297 43 RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ------VNYK-----GEKPMGFALFSTAQLAVAAKDALQEMI 111 (328)
Q Consensus 43 ~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i------~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~ 111 (328)
.+...-+..|||+|||.++|.+++.++|+.++.+.-.+ +++. ..||-|++.|--.++...|++.|++..
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc
Confidence 33445578899999999999999999999993322111 3331 247999999999999999999999999
Q ss_pred eCCCCCCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 112 FDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGG 191 (328)
Q Consensus 112 ~~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (328)
+. |+.|+|+.|+-..+-... ...+..+...+...........+ .|....
T Consensus 208 ~r---g~~~rVerAkfq~Kge~~--------~~~k~k~k~~~~kk~~k~q~k~~------dw~pd~-------------- 256 (382)
T KOG1548|consen 208 LR---GKKLRVERAKFQMKGEYD--------ASKKEKGKCKDKKKLKKQQQKLL------DWRPDR-------------- 256 (382)
T ss_pred cc---CcEEEEehhhhhhccCcC--------cccccccccccHHHHHHHHHhhc------ccCCCc--------------
Confidence 98 999999988755431111 00000000000000000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC----CCC-------HHHHHHHhccCCCeeEEEEEecCC
Q 020297 192 YGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE----SIN-------EEELRGLFSAQPGFKQMKVLRQER 260 (328)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~----~~t-------e~~L~~~F~~~G~i~~v~i~~~~~ 260 (328)
....-....++|.++|+=. ..+ +++|++-..+||.|..|.|.....
T Consensus 257 -----------------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP 313 (382)
T KOG1548|consen 257 -----------------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP 313 (382)
T ss_pred -----------------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC
Confidence 0000011257899999862 233 366777899999999999986556
Q ss_pred cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 261 HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 261 ~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.|++-|.|.+.++|..||+.|+|+-+.| |.|..+...
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdg---Rql~A~i~D 350 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDG---RQLTASIWD 350 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecc---eEEEEEEeC
Confidence 8999999999999999999999999999 899877643
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=9e-15 Score=127.45 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
.++|||+||++.+|+++|+++|+.||.|++|+|..+.. +|||||+|.+.++|..||. |||..|.| +.|+|.+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g---r~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD---QSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC---ceEEEEeccC
Confidence 57999999999999999999999999999999987663 7999999999999999995 99999999 9999999875
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.9e-15 Score=119.03 Aligned_cols=76 Identities=28% Similarity=0.434 Sum_probs=71.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.+.|||+||+.++++.||..+|..||.|..|.|.. .-.|||||+|+|..+|+.|+..|+|..|.| ..|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG---~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG---SRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC---ceEEEEeecCC
Confidence 68999999999999999999999999999999987 346999999999999999999999999999 79999998755
No 50
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1e-14 Score=128.23 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
..++|+|.|||+..-|-||+.+|.+||.|++|.|+.+.+ ||||||+|++.++|++|.++|||.+|.| |+|.|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG---RkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG---RKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec---eEEEEecc
Confidence 358999999999999999999999999999999987655 9999999999999999999999999999 99999998
Q ss_pred cCCCCCCCC
Q 020297 300 KNPFGKRKD 308 (328)
Q Consensus 300 k~~~~~~~~ 308 (328)
-.+..+++.
T Consensus 172 TarV~n~K~ 180 (376)
T KOG0125|consen 172 TARVHNKKK 180 (376)
T ss_pred chhhccCCc
Confidence 776655554
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=2.4e-14 Score=139.57 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~ 127 (328)
..++|||+||+.++++++|+++|+.| ..|.|.+++..++||||+|++.++|.+|++.|||..|. |+.|+|+|++.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f--~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~---Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEF--KPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELE---GSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhc--CCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEEEEccC
Confidence 46889999999999999999999988 22466666656799999999999999999999999998 89999999987
Q ss_pred cc
Q 020297 128 NL 129 (328)
Q Consensus 128 ~~ 129 (328)
..
T Consensus 307 ~~ 308 (578)
T TIGR01648 307 VD 308 (578)
T ss_pred CC
Confidence 54
No 52
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=9.7e-15 Score=134.49 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccH--HHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV--NSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~--~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
...+||||||.+.+++++|+.+|+.||.|.+|.|++..+||||||+|.+. .++.+||..|||.++.| +.|+|.-|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG---R~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG---GRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC---ceeEEeec
Confidence 36789999999999999999999999999999999888899999999987 78999999999999999 99999999
Q ss_pred cCCCCC
Q 020297 300 KNPFGK 305 (328)
Q Consensus 300 k~~~~~ 305 (328)
|+.+-.
T Consensus 86 KP~YLe 91 (759)
T PLN03213 86 KEHYLA 91 (759)
T ss_pred cHHHHH
Confidence 886543
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=106.27 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=69.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.++.|||+|||+++|.|+..++|.+||.|..++|--.+. +|.|||.|+|..+|.+|++.|+|+-+.+ +-|.|-|-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEec
Confidence 378999999999999999999999999999999964443 9999999999999999999999999999 89999884
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.9e-14 Score=121.92 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..+|-|.||+.+++|++|++||.+||.|..+.|.+++. ||||||+|.++++|++||+.|||+-++. --|+|+|
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---LILrvEw 265 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---LILRVEW 265 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce---EEEEEEe
Confidence 57899999999999999999999999999999988776 9999999999999999999999999998 8999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+|++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9975
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.5e-14 Score=122.53 Aligned_cols=77 Identities=14% Similarity=0.333 Sum_probs=69.5
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe------eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~------~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.-++|+|+|||+...|.||+.+|++| |.|+.+ +++||||||+|++.++|++|.++|||..+. ||
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GR 164 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GR 164 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ce
Confidence 34567899999999999999999999999 888554 578999999999999999999999999999 99
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|.|+.+...
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999987543
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.3e-14 Score=107.75 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.++||||+||.+.++||.|.+||++.|.|..|.+-.++. .|||||+|.+.++|..||+-+||+.++. +.|+|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---cceeee
Confidence 378999999999999999999999999999997744433 8899999999999999999999999999 999999
Q ss_pred ee
Q 020297 298 YS 299 (328)
Q Consensus 298 ~a 299 (328)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.4e-13 Score=98.01 Aligned_cols=67 Identities=27% Similarity=0.473 Sum_probs=60.6
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 226 LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
|||+|||+.+++++|+++|+.||.|..+++..++. +++|||+|.+.++|.+|++.++|..|+| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g---~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG---RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC---EEcC
Confidence 79999999999999999999999999999987643 7999999999999999999999999999 7774
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.3e-14 Score=112.16 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEe-eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY-KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~-~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.-+++|||+||+.++++.||..+|..| |.+ +.| .+--|||||+|+|..+|+.|+..|+|..|+ |..|+|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc---CceEEEE
Confidence 347899999999999999999999999 777 333 334599999999999999999999999998 9999999
Q ss_pred Eccccc
Q 020297 124 MAKKNL 129 (328)
Q Consensus 124 ~a~~~~ 129 (328)
++.-..
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 987554
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=8.2e-14 Score=120.77 Aligned_cols=74 Identities=30% Similarity=0.464 Sum_probs=70.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~ 303 (328)
..|||+|||.++++.+|+.+|++||.|++++|+. +||||+.++...|+.||..|||++|+| ..|.|+-+|+|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg---~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHG---VNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecc---eEEEEEeccccC
Confidence 4699999999999999999999999999999994 799999999999999999999999999 999999999883
Q ss_pred C
Q 020297 304 G 304 (328)
Q Consensus 304 ~ 304 (328)
+
T Consensus 76 k 76 (346)
T KOG0109|consen 76 K 76 (346)
T ss_pred C
Confidence 3
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=1.8e-12 Score=115.98 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=128.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.-.|.|++|-..++|.||.+.++.| |.|.-+. ..+..|+|+|+|.+.|..++.--..-.++ ..|+.--++|+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~f----G~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~-i~gq~Al~NySt 105 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNF----GPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIY-IAGQQALFNYST 105 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcC----CceEEEEeccccceeeeeeccccchhhheehhccCccc-ccCchhhcccch
Confidence 4569999999999999999999999 9885543 44689999999999999998633222221 116666677775
Q ss_pred cccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (328)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (328)
+++..+. +
T Consensus 106 sq~i~R~-----g------------------------------------------------------------------- 113 (494)
T KOG1456|consen 106 SQCIERP-----G------------------------------------------------------------------- 113 (494)
T ss_pred hhhhccC-----C-------------------------------------------------------------------
Confidence 5433211 0
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEe--CCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC
Q 020297 207 APSSYVPVQNTKDNPPCNTLFIG--NLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~--NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
.+...+++.|.+. |--..+|-+.|..+....|.|.+|.|++ ++.-.|.|+|++.+.|++|..+|||.
T Consensus 114 ----------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 114 ----------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred ----------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccc
Confidence 0011135666654 6667899999999999999999999996 45568999999999999999999999
Q ss_pred eeCCCCCceeEEEeecCCC
Q 020297 285 VIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 285 ~i~g~~~~~l~V~~ak~~~ 303 (328)
.|.. +|..|||+|+|+..
T Consensus 183 DIYs-GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 183 DIYS-GCCTLKIEYAKPTR 200 (494)
T ss_pred cccc-cceeEEEEecCcce
Confidence 9997 68899999999753
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.5e-13 Score=110.46 Aligned_cols=77 Identities=21% Similarity=0.423 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
.++|||+|||.++-|.||.+||.+||.|..|.|..... -.||||+|++..+|+.||..-+|+.++| ..|+|+|.+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg---~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG---CRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc---ceEEEEeccC
Confidence 58899999999999999999999999999999974444 6799999999999999999999999999 9999999875
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 62
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.2e-13 Score=115.99 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
+.+|||+||++.+|+++|+++|+.||.|.+|+|.++.+ ++||||+|.+.++|+.|| .|||..|.+ +.|.|.-...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d---~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD---QRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC---ceEEEEeCcc
Confidence 57999999999999999999999999999999998765 679999999999999999 599999999 8999987654
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 63
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.4e-13 Score=94.66 Aligned_cols=70 Identities=30% Similarity=0.537 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC--CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~--~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+|||+|||..+++++|+++|.+||.|..+++..+. .+++|||+|.+.++|++|++.|+|..+.| +.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~---~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG---RPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC---EEEeeC
Confidence 58999999999999999999999999999998654 36999999999999999999999999998 888873
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.6e-13 Score=98.42 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.+.++.|||+|||+++|.|++.++|-+| |.|..++ ..+|-|||.|++..+|.+|++.|+|+.++ ++-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~---~ryl 87 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD---NRYL 87 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC---CceE
Confidence 4568999999999999999999999999 9996653 34699999999999999999999999998 7999
Q ss_pred EEEEcccc
Q 020297 121 HTEMAKKN 128 (328)
Q Consensus 121 ~v~~a~~~ 128 (328)
.|-|....
T Consensus 88 ~vlyyq~~ 95 (124)
T KOG0114|consen 88 VVLYYQPE 95 (124)
T ss_pred EEEecCHH
Confidence 99887554
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=3.7e-13 Score=95.40 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=55.0
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
|||+|||.++|+++|+++|+.| |.+..+ . ..++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~---~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN---GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC---ccCcC
Confidence 7999999999999999999999 666332 2 12599999999999999999999999998 77775
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.44 E-value=2.7e-13 Score=114.26 Aligned_cols=78 Identities=33% Similarity=0.536 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHH----HhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRG----LFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~----~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
++.||||.||.+.+..++|+. +|++||.|..|....... ||.|||.|.+.+.|..|+.+|+|+.+.| +.|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG---KPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC---chhhe
Confidence 456999999999999999998 999999999998875444 9999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
+||+.+
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 999876
No 67
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=5.6e-13 Score=90.55 Aligned_cols=56 Identities=25% Similarity=0.486 Sum_probs=51.1
Q ss_pred HHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 240 LRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 240 L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
|+++|++||.|..+.+..+. +++|||+|.+.++|.+|++.|||..+.| +.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g---~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG---RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT---EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 68899999999999998533 5999999999999999999999999999 99999996
No 68
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=1.9e-13 Score=113.02 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
-.+|-|-||-+.++.++|+.+|++||.|-+|.|.++.- +|||||.|.+..+|+.||++|.|.+|+| +.|+|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---RelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---RELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc---ceeeehh
Confidence 46899999999999999999999999999999976543 9999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.-
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8743
No 69
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.9e-12 Score=122.53 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=126.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
....++||++||..++++++++++..|+.+.+--+.. ..+|||||.+|.+......|++.|||..+. ++.|.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc---CceeEe
Confidence 3467899999999999999999999993333222222 246899999999999999999999999998 799999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
..+-.......... . .... +..+.
T Consensus 364 q~A~~g~~~~~~~~----------~------------~~~~------------------------~~~~i---------- 387 (500)
T KOG0120|consen 364 QRAIVGASNANVNF----------N------------ISQS------------------------QVPGI---------- 387 (500)
T ss_pred ehhhccchhccccC----------C------------cccc------------------------ccccc----------
Confidence 88754322111000 0 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC--C-CCH-------HHHHHHhccCCCeeEEEEEec-C------CcceEE
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGE--S-INE-------EELRGLFSAQPGFKQMKVLRQ-E------RHTVCF 265 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~--~-~te-------~~L~~~F~~~G~i~~v~i~~~-~------~~g~aF 265 (328)
........+.++.+|.+.|+=. + .++ |+++..+++||.|..|.|-++ . +.|..|
T Consensus 388 ---------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVF 458 (500)
T KOG0120|consen 388 ---------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVF 458 (500)
T ss_pred ---------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEE
Confidence 0000011222355666666431 1 111 456678889999999999765 2 378899
Q ss_pred EEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 266 IEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 266 V~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
|+|.+.+++++|+.+|+|..+.+ +.+..+|-
T Consensus 459 Vefas~ed~qrA~~~L~GrKF~n---RtVvtsYy 489 (500)
T KOG0120|consen 459 VEFADTEDSQRAMEELTGRKFAN---RTVVASYY 489 (500)
T ss_pred EEecChHHHHHHHHHccCceeCC---cEEEEEec
Confidence 99999999999999999999999 89988884
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=8.2e-12 Score=111.47 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=64.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
-.+|||..+..+++|+||+.+|+.| |.|+.++ +.|||||++|.+..+-..|+..||=+++. |+-|
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG---GQyL 282 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYL 282 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc---cceE
Confidence 4689999999999999999999999 8887763 34699999999999999999999999998 8999
Q ss_pred EEEEccc
Q 020297 121 HTEMAKK 127 (328)
Q Consensus 121 ~v~~a~~ 127 (328)
+|.-+..
T Consensus 283 RVGk~vT 289 (544)
T KOG0124|consen 283 RVGKCVT 289 (544)
T ss_pred ecccccC
Confidence 9976543
No 71
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=3.8e-12 Score=113.70 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=63.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.++|||+|||.++++++|+++|..| |.+..+ . ..+|||||.|.+.++|..|+..++|..|. |+.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE---GRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC---Ccee
Confidence 6999999999999999999999999 655222 1 23699999999999999999999999999 8999
Q ss_pred EEEEccc
Q 020297 121 HTEMAKK 127 (328)
Q Consensus 121 ~v~~a~~ 127 (328)
+|.++..
T Consensus 188 ~v~~~~~ 194 (306)
T COG0724 188 RVQKAQP 194 (306)
T ss_pred Eeecccc
Confidence 9999753
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.7e-12 Score=110.17 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=68.7
Q ss_pred CCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------C-CcceEEEEeCCHHHHHHHHHHhcCceeCCC
Q 020297 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------G-EKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (328)
Q Consensus 44 ~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~-~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~ 115 (328)
..++...+|=|.||+.+++|++|++||.+| |.|.++. + .||||||.|++.++|.+||+.|||+-++
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd-- 257 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD-- 257 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc--
Confidence 345678889999999999999999999999 8775551 2 3799999999999999999999999998
Q ss_pred CCCeEEEEEcccc
Q 020297 116 TKSVLHTEMAKKN 128 (328)
Q Consensus 116 ~gr~l~v~~a~~~ 128 (328)
.-.|+|+|++++
T Consensus 258 -~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 -NLILRVEWSKPS 269 (270)
T ss_pred -eEEEEEEecCCC
Confidence 588999999865
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.39 E-value=4.5e-11 Score=109.06 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
...++|||+|||+++||+.|++-|..||.|++++|+. ..+..+.|+|.+.++|++|+..|||..+.| +.|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l~G---r~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRLDG---RNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCcccC---ceeeeeeC
Confidence 3568999999999999999999999999999999973 455567999999999999999999999999 99999873
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=2e-12 Score=112.90 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=63.2
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.++|||+||++++|+++|+++|+.| |.|..+. ..+|||||+|++.++|..|+. |+|..|. |+.|+|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~---gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV---DQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC---CceEEEE
Confidence 6899999999999999999999999 8874442 246999999999999999996 9999998 8999999
Q ss_pred Eccc
Q 020297 124 MAKK 127 (328)
Q Consensus 124 ~a~~ 127 (328)
++..
T Consensus 76 ~a~~ 79 (260)
T PLN03120 76 PAED 79 (260)
T ss_pred eccC
Confidence 9753
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.5e-13 Score=101.20 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=62.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--e--e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--Y--K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~--~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..||||+||++.++||.|.+||++. |.|-+ | . +-.|||||+|.+.++|..|+.-++|+.++ .++|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~i 108 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRPI 108 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc---ccce
Confidence 6899999999999999999999999 87733 3 1 22499999999999999999999999998 6999
Q ss_pred EEEEc
Q 020297 121 HTEMA 125 (328)
Q Consensus 121 ~v~~a 125 (328)
+|+|.
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 99985
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.2e-13 Score=112.70 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEec----CCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~----~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++||||+|..++||.-|...|-+||.|..|.+..+ +.||||||+|.-.|+|..||..||+.+|.| |.|+|.|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN~ 86 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVNL 86 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEee
Confidence 689999999999999999999999999999998532 349999999999999999999999999999 9999999
Q ss_pred ecCCCCC
Q 020297 299 SKNPFGK 305 (328)
Q Consensus 299 ak~~~~~ 305 (328)
+++...+
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9987544
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=3.8e-12 Score=90.30 Aligned_cols=71 Identities=32% Similarity=0.608 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. +++|||+|.+.++|..|++.++|..+.| +.|+|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~---~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG---RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEeC
Confidence 489999999999999999999999999999987553 7899999999999999999999999999 8999875
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.3e-12 Score=100.99 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
+=.|||.+++...||++|.+.|+-||+|+.+.+-.+.. +|||.|+|.+.+.|+.||.+|||..|.| +.|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeEEE
Confidence 45799999999999999999999999999999865554 8999999999999999999999999999 9999999
Q ss_pred ecCCCC
Q 020297 299 SKNPFG 304 (328)
Q Consensus 299 ak~~~~ 304 (328)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 866533
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=2.9e-12 Score=90.03 Aligned_cols=67 Identities=28% Similarity=0.528 Sum_probs=61.6
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 228 IGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 228 V~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
|+||+..+++++|+++|++||.|..+.+..+.. +++|||+|.+.++|..|++.|+|..+.| +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEeC
Confidence 579999999999999999999999999987544 7899999999999999999999999998 888873
No 80
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=3.3e-12 Score=108.08 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=65.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
-+.||||+|++.+..|+|++.|++||+|+++.|+.++. ||||||+|.|.++|++|++. -+-.|+| |+--|.+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdG---R~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDG---RKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccc---cccccch
Confidence 47899999999999999999999999999999987765 99999999999999999985 4467888 7766666
Q ss_pred ec
Q 020297 299 SK 300 (328)
Q Consensus 299 ak 300 (328)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 54
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.1e-13 Score=112.32 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=70.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
+.-|||||||+.+||.+|.-+|++||+|+.|.++++++ +||||+.|+|..+...|+..|||..|.| |.|+|.+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEeee
Confidence 45699999999999999999999999999999998876 8999999999999999999999999999 9999987
Q ss_pred ecC
Q 020297 299 SKN 301 (328)
Q Consensus 299 ak~ 301 (328)
.-.
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 543
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=117.56 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=72.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~ 127 (328)
..+.|||+||+.++|||.|+++|..| |+|.+++..|-||||+|.++++|.+|++.+||..++ |..|.|.+||+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeld---G~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELD---GSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccceeEEeecchHHHHHHHHHhcCceec---CceEEEEecCC
Confidence 36889999999999999999999999 999999888899999999999999999999999999 99999999998
Q ss_pred ccccc
Q 020297 128 NLFVK 132 (328)
Q Consensus 128 ~~~~~ 132 (328)
..+.+
T Consensus 331 ~~k~k 335 (506)
T KOG0117|consen 331 VDKKK 335 (506)
T ss_pred hhhhc
Confidence 76543
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.33 E-value=4.5e-11 Score=110.83 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=109.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-C-CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-~-~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
...-|=+++||+++|++||.++|+.+...- -++... + ..|-|||+|.+.+++++|++ .+...+. .|=|.|.-+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~-~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg---~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCGIEN-LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG---HRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCceeE-EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhC---CceEEEEcc
Confidence 345577899999999999999999882211 122222 2 24999999999999999998 7777775 477777644
Q ss_pred ccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (328)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
..+.-.+- + .
T Consensus 84 ~~~e~d~~--------~-------------------------------------~------------------------- 93 (510)
T KOG4211|consen 84 GGAEADWV--------M-------------------------------------R------------------------- 93 (510)
T ss_pred CCcccccc--------c-------------------------------------c-------------------------
Confidence 32211000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEE---ecCCcceEEEEEccHHHHHHHHHHh
Q 020297 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVL---RQERHTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~-v~i~---~~~~~g~aFV~F~~~~~A~~Al~~l 281 (328)
+.. ........+|-+++||+.||++||.++|+-.--|.. +-+. +-+..|-|||+|++.++|++||..
T Consensus 94 -------~~g-~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r- 164 (510)
T KOG4211|consen 94 -------PGG-PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR- 164 (510)
T ss_pred -------CCC-CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-
Confidence 000 000012456889999999999999999987643333 2222 112278999999999999999984
Q ss_pred CCCeeCCCCCceeEEEe
Q 020297 282 QGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 282 nG~~i~g~~~~~l~V~~ 298 (328)
|-..|+. +=|.|.-
T Consensus 165 hre~iGh---RYIEvF~ 178 (510)
T KOG4211|consen 165 HRENIGH---RYIEVFR 178 (510)
T ss_pred HHHhhcc---ceEEeeh
Confidence 6666665 6666654
No 84
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=5.6e-12 Score=118.68 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+.|||||+++++++++|.++|+..|.|.+++++.|+. +||||++|.+.++|++|++.|||.++.| ++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g---r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG---RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC---ceEEeecc
Confidence 7899999999999999999999999999999987665 8999999999999999999999999999 99999998
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
...
T Consensus 96 ~~~ 98 (435)
T KOG0108|consen 96 SNR 98 (435)
T ss_pred ccc
Confidence 765
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=9e-12 Score=115.14 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----eCCcceEEEEeCCH--HHHHHHHHHhcCceeCCCCCCeE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTA--QLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~~~kg~aFV~F~~~--~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..+.+||||||+++++++||+++|..| |.|..+ .+.||||||+|.+. .++.+||..|||..|. ||.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK---GR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec---Ccee
Confidence 346899999999999999999999999 776333 23489999999987 7899999999999999 9999
Q ss_pred EEEEccccc
Q 020297 121 HTEMAKKNL 129 (328)
Q Consensus 121 ~v~~a~~~~ 129 (328)
+|+-|+...
T Consensus 81 KVNKAKP~Y 89 (759)
T PLN03213 81 RLEKAKEHY 89 (759)
T ss_pred EEeeccHHH
Confidence 999998765
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=110.54 Aligned_cols=76 Identities=33% Similarity=0.540 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..+|||+||+.++++++|+++|..||.|..+++..+. .+|||||+|.+.++|..|+..|||..|.| +.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~---~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG---RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC---ceeEeec
Confidence 6899999999999999999999999999999997664 28999999999999999999999999999 9999999
Q ss_pred ecC
Q 020297 299 SKN 301 (328)
Q Consensus 299 ak~ 301 (328)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 754
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.7e-11 Score=106.96 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
...|-+||||+-|+.+++|..|+..|+.||.|+.|+|+++. .+|||||+|.++.+...|.+..+|.+|+| +.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg---rri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG---RRI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC---cEE
Confidence 34568999999999999999999999999999999998763 39999999999999999999999999999 999
Q ss_pred EEEeecC
Q 020297 295 RIQYSKN 301 (328)
Q Consensus 295 ~V~~ak~ 301 (328)
-|.+-+-
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 9988654
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=1e-11 Score=88.23 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=53.0
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---eC----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY---KG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
|||+|||.++++++|+++|+.+ |.|..+ +. .+|+|||+|.+.++|.+|++.++|..|. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~---g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID---GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC---CEEcC
Confidence 7999999999999999999999 766443 22 2599999999999999999999999998 78764
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=97.75 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=70.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
...+||||.+||.++...||..+|..|-..+...|.-..+ +.+|||+|.+..+|+.|+++|||..++-.....|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3479999999999999999999999999888887753222 46999999999999999999999999764446899
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|+++|+-
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9998865
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.28 E-value=1e-11 Score=120.28 Aligned_cols=82 Identities=16% Similarity=0.354 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
...++|||||.|+.+++|.+|+++|+.||+|.+|.++ ..++||||.+..+.+|.+||++|++..+.+ +.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li--~~R~cAfI~M~~RqdA~kalqkl~n~kv~~---k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI--PPRGCAFIKMVRRQDAEKALQKLSNVKVAD---KTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec--cCCceeEEEEeehhHHHHHHHHHhcccccc---eeeEEeee
Confidence 3347899999999999999999999999999999997 568999999999999999999999999999 99999999
Q ss_pred cCCCCCCC
Q 020297 300 KNPFGKRK 307 (328)
Q Consensus 300 k~~~~~~~ 307 (328)
..+ |-+.
T Consensus 493 ~g~-G~ks 499 (894)
T KOG0132|consen 493 VGK-GPKS 499 (894)
T ss_pred ccC-Ccch
Confidence 987 4433
No 91
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.9e-11 Score=108.65 Aligned_cols=77 Identities=21% Similarity=0.458 Sum_probs=69.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHH-hCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN-LQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~-lnG~~i~g~~~~~l~V~~ak 300 (328)
.-++|||++|...++|.+|++.|.+||+|+++++. .+++||||+|.++++|++|... +|-..|+| ++|+|.|++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~--~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G---~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL--PRKGCAFVTFTTREAAEKAAEKSFNKLVING---FRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEee--cccccceeeehhhHHHHHHHHhhcceeeecc---eEEEEEeCC
Confidence 35899999999999999999999999999999998 4568999999999999998776 56677888 999999999
Q ss_pred CCC
Q 020297 301 NPF 303 (328)
Q Consensus 301 ~~~ 303 (328)
.+.
T Consensus 302 ~~~ 304 (377)
T KOG0153|consen 302 PKQ 304 (377)
T ss_pred Ccc
Confidence 843
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2.1e-11 Score=114.84 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=66.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
+.|||||||++++|++|..+|+.. |.|+.++ ..|||||++|.+.++|.+|++.|||.++. ||+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEE
Confidence 899999999999999999999999 8886653 23699999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020297 122 TEMAKKNLF 130 (328)
Q Consensus 122 v~~a~~~~~ 130 (328)
|+|+.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999876544
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=7.5e-11 Score=101.46 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=61.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
...+|||+||++++|+++|+++|+.| |.|..++ ..+++|||+|++.++|+.|+. |+|..|. +++|.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~---d~~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV---DQRVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC---CceEEE
Confidence 46899999999999999999999999 8874442 234899999999999999996 9999998 799999
Q ss_pred EEcc
Q 020297 123 EMAK 126 (328)
Q Consensus 123 ~~a~ 126 (328)
..+.
T Consensus 76 t~~~ 79 (243)
T PLN03121 76 TRWG 79 (243)
T ss_pred EeCc
Confidence 7653
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=9.3e-11 Score=82.53 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=56.9
Q ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eC----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 51 ~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
+|||+|||..+++++|+++|..| |.+..+ .. .+|+|||+|.+.++|.+|++.++|..+. |+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 59999999999999999999999 776443 22 2599999999999999999999999997 788876
No 95
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=3e-11 Score=100.20 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=67.2
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--------eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--------~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..+...+|-|-||-+.++.++|+.+|++| |.|..+ +..+|||||.|.+..+|+.|+++|+|..++
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--- 81 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--- 81 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---
Confidence 34567889999999999999999999999 666333 134699999999999999999999999999
Q ss_pred CCeEEEEEcccc
Q 020297 117 KSVLHTEMAKKN 128 (328)
Q Consensus 117 gr~l~v~~a~~~ 128 (328)
|+.|+|++|+..
T Consensus 82 gRelrVq~aryg 93 (256)
T KOG4207|consen 82 GRELRVQMARYG 93 (256)
T ss_pred cceeeehhhhcC
Confidence 999999998754
No 96
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=4.5e-11 Score=97.35 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..||||+||+..++++-|.++|-+.|.|+.+++.++. .+|||||+|.++|+|+=|++.||.-.|.| ++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg---rpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---RPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC---ceeEEEe
Confidence 5789999999999999999999999999999995433 48999999999999999999999999999 9999998
Q ss_pred ec
Q 020297 299 SK 300 (328)
Q Consensus 299 ak 300 (328)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 97
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.7e-11 Score=101.15 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=59.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-----e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-----~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..-.+||||+|++.+..|+|++.|+.| |+|++. + .+||||||+|+|.++|++|++.- .-.|+ ||
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piId---GR 81 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIID---GR 81 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCccc---cc
Confidence 346789999999999999999999999 666442 1 35799999999999999998743 33556 89
Q ss_pred eEEEEEccc
Q 020297 119 VLHTEMAKK 127 (328)
Q Consensus 119 ~l~v~~a~~ 127 (328)
+-.|++|..
T Consensus 82 ~aNcnlA~l 90 (247)
T KOG0149|consen 82 KANCNLASL 90 (247)
T ss_pred ccccchhhh
Confidence 999988754
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8e-10 Score=103.32 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=106.0
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEee--C-------Ccc---eEEEEeCCHHHHHHHHHHhcCceeCCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK--G-------EKP---MGFALFSTAQLAVAAKDALQEMIFDAE 115 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~~--~-------~kg---~aFV~F~~~~~A~~A~~~l~g~~~~~~ 115 (328)
.++||||+||.+++|+.|...|..| |.+ +.+- . -+| |+|..|+++.+...-+.+ +...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~F----Gs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~-- 329 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQF----GSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEG-- 329 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccc----cceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhc--
Confidence 5789999999999999999999999 766 4442 1 146 999999999887765443 2222
Q ss_pred CCCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 116 TKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVP 195 (328)
Q Consensus 116 ~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (328)
...+.++.+....+.+.- +-+ .|-...
T Consensus 330 -~~~~yf~vss~~~k~k~V------------QIr----------------------PW~laD------------------ 356 (520)
T KOG0129|consen 330 -EGNYYFKVSSPTIKDKEV------------QIR----------------------PWVLAD------------------ 356 (520)
T ss_pred -ccceEEEEecCcccccce------------eEE----------------------eeEecc------------------
Confidence 233444433322111100 000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhc-cCCCeeEEEEEecCC----cceEEEEEcc
Q 020297 196 PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS-AQPGFKQMKVLRQER----HTVCFIEFED 270 (328)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~-~~G~i~~v~i~~~~~----~g~aFV~F~~ 270 (328)
+.+... ....-.+.+|||||+||..++-+||..+|. -||.|+.|-|-+|.+ +|-|=|+|.+
T Consensus 357 -------------s~fv~d-~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 357 -------------SDFVLD-HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred -------------chhhhc-cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 000000 011122479999999999999999999999 799999999977755 8999999999
Q ss_pred HHHHHHHHHH
Q 020297 271 VNSASSVHHN 280 (328)
Q Consensus 271 ~~~A~~Al~~ 280 (328)
..+-.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999986
No 99
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.17 E-value=1.7e-10 Score=110.87 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=76.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-------cceEEEEEccHHHHHHHHHHhCCCeeC
Q 020297 215 QNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIP 287 (328)
Q Consensus 215 ~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~i~ 287 (328)
+-.++.|.+++|||+||++.++++.|...|++||.|.+|+|+-... +.||||-|.++.+|++|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3445567789999999999999999999999999999999985432 789999999999999999999999999
Q ss_pred CCCCceeEEEeecCC
Q 020297 288 SSGSVGMRIQYSKNP 302 (328)
Q Consensus 288 g~~~~~l~V~~ak~~ 302 (328)
+ ..|++.|+|.-
T Consensus 246 ~---~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 E---YEMKLGWGKAV 257 (877)
T ss_pred e---eeeeecccccc
Confidence 9 99999999754
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.9e-10 Score=100.39 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCCCCCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCc
Q 020297 39 DNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 39 ~~~~~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~ 110 (328)
........++-+||||+-|+++++|.+|++.|+.| |.|-+++ ..||||||+|++..+...|.+..+|+
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 34445556889999999999999999999999999 8873331 24699999999999999999999999
Q ss_pred eeCCCCCCeEEEEEcc
Q 020297 111 IFDAETKSVLHTEMAK 126 (328)
Q Consensus 111 ~~~~~~gr~l~v~~a~ 126 (328)
.|+ |+.|.|++-.
T Consensus 167 ~Id---grri~VDvER 179 (335)
T KOG0113|consen 167 KID---GRRILVDVER 179 (335)
T ss_pred eec---CcEEEEEecc
Confidence 999 8999998753
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.7e-11 Score=100.49 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...||||||+|-.+|+|.-|...|=+| |.|..+. .-||||||+|+-.|+|..||..||+..++ ||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---Gr 80 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GR 80 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ce
Confidence 357899999999999999999999999 8885542 23699999999999999999999999999 99
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
+|+|+||++...
T Consensus 81 tirVN~AkP~ki 92 (298)
T KOG0111|consen 81 TIRVNLAKPEKI 92 (298)
T ss_pred eEEEeecCCccc
Confidence 999999987654
No 102
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=4.9e-11 Score=117.37 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=132.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCC-----cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGE-----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~-----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..++|||++||..++++.+|+..|..+ |.| |.+++- .-||||.|.+...+-.|+..+.+..|.. | .
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~----gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~--g-~ 442 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDES----GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN--G-T 442 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhh----ccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc--C-c
Confidence 348999999999999999999999999 887 444322 3899999999999999999899888863 2 3
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
+++.+...+
T Consensus 443 ~r~glG~~k----------------------------------------------------------------------- 451 (975)
T KOG0112|consen 443 HRIGLGQPK----------------------------------------------------------------------- 451 (975)
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 333333110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~ 279 (328)
..+++.|+|++|..-+....|...|..||.|..|.+. .+.-|++|.|.+...|+.|+.
T Consensus 452 --------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 452 --------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred --------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHH
Confidence 0136789999999999999999999999999999884 556799999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeecCCCCCCCC
Q 020297 280 NLQGAVIPSSGSVGMRIQYSKNPFGKRKD 308 (328)
Q Consensus 280 ~lnG~~i~g~~~~~l~V~~ak~~~~~~~~ 308 (328)
.|-|..|++ .+++|+|.|++...+.-.+
T Consensus 510 ~~rgap~G~-P~~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 510 DMRGAPLGG-PPRRLRVDLASPPGATPQQ 537 (975)
T ss_pred HHhcCcCCC-CCcccccccccCCCCChhh
Confidence 999999998 4578999999988665443
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=1.9e-10 Score=81.75 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=49.9
Q ss_pred HHHHHHHhc----cCCCeeEEE-EEecC------CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 237 EEELRGLFS----AQPGFKQMK-VLRQE------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 237 e~~L~~~F~----~~G~i~~v~-i~~~~------~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+++|+++|+ +||.|.++. |..+. .+|||||+|.+.++|.+|++.|||..+.| +.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g---r~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG---RTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEeC
Confidence 678888888 999999985 43222 38999999999999999999999999999 898863
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.9e-11 Score=90.70 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=65.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e--C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~--~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
++=.|||.++...+||++|.+.|..| |.|-.+ . + .||||+|+|++.++|+.|+.+|||..+. |+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~ 143 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQN 143 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCc
Confidence 35679999999999999999999999 877333 2 1 3799999999999999999999999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
+.|+|+..+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999998655
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=6.5e-10 Score=105.53 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=129.9
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCC---C---c-cc-EEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPG---Y---E-AS-QVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~---~---~-g~-i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~ 114 (328)
..-.++.+||++++..++++.+-.+|..-.- . . |. ++.+ .-.+.+||++|.+.+.|..|+. +++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~- 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFE- 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhC-
Confidence 3456899999999999999999988875521 1 1 22 3333 2346999999999999999986 8888887
Q ss_pred CCCCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 115 ETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGV 194 (328)
Q Consensus 115 ~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (328)
|+.+++.--...-... ... . .
T Consensus 249 --g~~~~~~r~~d~~~~p--------------------------~~~-----------~--------------------~ 269 (500)
T KOG0120|consen 249 --GRPLKIRRPHDYQPVP--------------------------GIT-----------L--------------------S 269 (500)
T ss_pred --CCCceecccccccCCc--------------------------cch-----------h--------------------h
Confidence 7887774211110000 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEcc
Q 020297 195 PPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFED 270 (328)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~ 270 (328)
...+ .............-....+||+||+..++++.++++...||.+..++++.+. ++||||-+|.+
T Consensus 270 ~~~~---------~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~d 340 (500)
T KOG0120|consen 270 PSQL---------GKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCD 340 (500)
T ss_pred hccc---------cccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeC
Confidence 0000 0000000001112235779999999999999999999999999988886543 38999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 271 VNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 271 ~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
..-...|+..|||..+++ +.|.|+.+-.-
T Consensus 341 psvtd~A~agLnGm~lgd---~~lvvq~A~~g 369 (500)
T KOG0120|consen 341 PSVTDQAIAGLNGMQLGD---KKLVVQRAIVG 369 (500)
T ss_pred CcchhhhhcccchhhhcC---ceeEeehhhcc
Confidence 999999999999999999 89999987543
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=5.2e-10 Score=75.82 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHhCCCCcccEEEee--CCc-ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 66 LQNLLRWLPGYEASQVNYK--GEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 66 L~~~f~~~~~~~g~i~~~~--~~k-g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
|+++|++| |.|..+. ..+ ++|||+|.+.++|.+|++.|||..|. |++|+|+||
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCc----ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 68899999 9996664 344 99999999999999999999999998 899999986
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=8.4e-10 Score=77.99 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=58.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 51 ~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
+|||+|||.++++++|+++|..+ |.|..+. . .+|+|||+|.+.++|..|++.+++..+. |+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEe
Confidence 58999999999999999999999 6664431 1 2699999999999999999999999987 8998886
Q ss_pred E
Q 020297 124 M 124 (328)
Q Consensus 124 ~ 124 (328)
|
T Consensus 74 ~ 74 (74)
T cd00590 74 F 74 (74)
T ss_pred C
Confidence 4
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=5.4e-11 Score=99.53 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=111.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
+..+||||.||-..|+||-|.++|-.- |.|++++ ...-||||.|.+.-+...|++.+||..+. ++.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~---~~e~ 79 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE---EDEE 79 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc---cchh
Confidence 568999999999999999999999999 9998874 12259999999999999999999999998 6676
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (328)
.|.+
T Consensus 80 q~~~---------------------------------------------------------------------------- 83 (267)
T KOG4454|consen 80 QRTL---------------------------------------------------------------------------- 83 (267)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 6643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeC----CCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHH
Q 020297 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGN----LGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNS 273 (328)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~N----L~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~ 273 (328)
+-|| |...++++.+...|+.-|.+..+++-++.+ +.++||.+....+
T Consensus 84 --------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 84 --------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred --------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 2333 556678888999999999999999965443 8899999998888
Q ss_pred HHHHHHHhCCCeeCC
Q 020297 274 ASSVHHNLQGAVIPS 288 (328)
Q Consensus 274 A~~Al~~lnG~~i~g 288 (328)
--.+++...+..+.-
T Consensus 138 ~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 138 VPFALDLYQGLELFQ 152 (267)
T ss_pred CcHHhhhhcccCcCC
Confidence 888888888777654
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=6.1e-11 Score=107.79 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=122.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCC-CcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPG-YEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~-~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
..||++||...++..+|+.+|..... ..|. +.++ .||+||.+.|...|.+|++.|+|..-.- |+++.|+++-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~-fl~k--~gyafvd~pdq~wa~kaie~~sgk~elq--Gkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK--SGYAFVDCPDQQWANKAIETLSGKVELQ--GKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc-eeee--cceeeccCCchhhhhhhHHhhchhhhhc--CceeeccchhhH
Confidence 36999999999999999999987632 2233 3333 3999999999999999999999985532 899999887655
Q ss_pred cccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 129 LFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAP 208 (328)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (328)
....
T Consensus 77 kqrs---------------------------------------------------------------------------- 80 (584)
T KOG2193|consen 77 KQRS---------------------------------------------------------------------------- 80 (584)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 3322
Q ss_pred CCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEE-ecCCcceEEEEEccHHHHHHHHHHhCCCeeC
Q 020297 209 SSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVL-RQERHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (328)
Q Consensus 209 ~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~-~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~ 287 (328)
+.+-|+|+++...++.|..|...||.++.+..+ .+...-..-|+|...+.+..||..|||..+.
T Consensus 81 ---------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 81 ---------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred ---------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 336799999999999999999999999888664 2333456678899999999999999999999
Q ss_pred CCCCceeEEEee
Q 020297 288 SSGSVGMRIQYS 299 (328)
Q Consensus 288 g~~~~~l~V~~a 299 (328)
. ..++|+|-
T Consensus 146 n---~~~k~~Yi 154 (584)
T KOG2193|consen 146 N---QHLKVGYI 154 (584)
T ss_pred h---hhhhcccC
Confidence 8 89999983
No 110
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.5e-10 Score=96.64 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=69.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCee-CCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVI-PSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i-~g~~~~~l~V~ 297 (328)
..+.||||-|.+.-.|||++.+|..||.|+++.+.+..+ |||+||.|.+..+|+.||..|||..- .| -..-|-|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG-ASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG-ASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCC-CccceEEE
Confidence 468899999999999999999999999999999987554 99999999999999999999999644 44 23579999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+.-.
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98644
No 111
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=1e-09 Score=76.79 Aligned_cols=62 Identities=27% Similarity=0.357 Sum_probs=53.6
Q ss_pred EcCCCCcCCHHHHHHHHHhCCCCcccEEEee----C----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 54 ITGLPDDVKERELQNLLRWLPGYEASQVNYK----G----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 54 V~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
|+|||.++++++|+++|+.| |.|..+. . .+|+|||+|.+.++|.+|++.|++..+. |+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEe
Confidence 68999999999999999999 7664331 1 2589999999999999999999999997 788876
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=2.4e-09 Score=100.92 Aligned_cols=175 Identities=16% Similarity=0.117 Sum_probs=115.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.-..++|+|-|||.+|++++|+++|+.| |+|-.++ ..+|..||+|.|..+|++|+++|++..|. |+.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~---~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIA---GKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhh---hhhhcC
Confidence 3458999999999999999999999999 7774443 34599999999999999999999999998 777761
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
... ..+.+. . ......|.......
T Consensus 145 ~~~-----~~~~~~--------------~---------------~~~~~~~~~~~~p~---------------------- 168 (549)
T KOG4660|consen 145 PGG-----ARRAMG--------------L---------------QSGTSFLNHFGSPL---------------------- 168 (549)
T ss_pred CCc-----ccccch--------------h---------------cccchhhhhccchh----------------------
Confidence 110 000000 0 00000010000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
.....++-+...+|+ .|.+..+..-++-+|+.||.+.. +... ..+..-|+.|.+..++..++..+
T Consensus 169 -----------a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~-~~~hq~~~~~~~~~s~a~~~~~~- 233 (549)
T KOG4660|consen 169 -----------ANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETP-LLNHQRFVEFADNRSYAFSEPRG- 233 (549)
T ss_pred -----------hcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cccc-chhhhhhhhhccccchhhcccCC-
Confidence 000000111223433 38888888777788889998877 5542 22347899999999998887755
Q ss_pred CCeeCCCCCceeEEEeecC
Q 020297 283 GAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~ 301 (328)
|+.+.+ ...-+.|+++
T Consensus 234 G~~~s~---~~~v~t~S~~ 249 (549)
T KOG4660|consen 234 GFLISN---SSGVITFSGP 249 (549)
T ss_pred ceecCC---CCceEEecCC
Confidence 888887 5677788776
No 113
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=3.9e-11 Score=97.63 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=63.0
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..=|||||||+++||-||--+|+.| |.|+.+. .+|||||..|+|..+-..|+..|||+.+. ||.|
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRti 107 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTI 107 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeE
Confidence 4569999999999999999999999 8886651 24699999999999999999999999999 8999
Q ss_pred EEEEc
Q 020297 121 HTEMA 125 (328)
Q Consensus 121 ~v~~a 125 (328)
+|+..
T Consensus 108 rVDHv 112 (219)
T KOG0126|consen 108 RVDHV 112 (219)
T ss_pred Eeeec
Confidence 99864
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.1e-09 Score=106.52 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=66.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.||||||.|+..++|.||.++|+.| |.| |.+...+|||||.+....+|.+|+.+|+...+. ++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~---~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA---DKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc----ccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc---ceeeEEeeec
Confidence 4899999999999999999999999 988 444577899999999999999999999999997 7999999986
Q ss_pred cc
Q 020297 127 KN 128 (328)
Q Consensus 127 ~~ 128 (328)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 54
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-09 Score=96.55 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcc----eEEEEEccHHHHHHHHHHhCCCeeCCCCCc
Q 020297 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT----VCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (328)
Q Consensus 217 ~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g----~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~ 292 (328)
.+..||.+.|||.-|.+-+|+++|.-+|++||.|.++.|+++...| ||||+|.+.++.++|.=.|.+.-|.. +
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD---r 309 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD---R 309 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---c
Confidence 3456788999999999999999999999999999999999887744 99999999999999999999999999 9
Q ss_pred eeEEEeecC
Q 020297 293 GMRIQYSKN 301 (328)
Q Consensus 293 ~l~V~~ak~ 301 (328)
+|+|.|+-+
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999999643
No 116
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=3.7e-09 Score=99.53 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|+|.+|...+--.+|+.||++||.|+..+|+++.. +.||||++.+-++|.+||+.||-.+|.| +-|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG---rmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG---RMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc---eeeeee
Confidence 367999999999999999999999999999999987654 8899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
-+|+-
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 98764
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=7.9e-09 Score=86.13 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccC-CCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQ-PGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~-G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
...+||..++.-+.+.+|...|.+| |.|..+++-|++. +|||||+|++.+.|..|-+.||++-+.+ +.|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e---~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME---HLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh---heeeeE
Confidence 4679999999999999999999999 6788888855543 9999999999999999999999999999 999999
Q ss_pred eecC
Q 020297 298 YSKN 301 (328)
Q Consensus 298 ~ak~ 301 (328)
|=.+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 8543
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.9e-09 Score=101.60 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=66.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+..+|+|-|||..|++++|+.+|+.||+|++|+..+ ..+|.+||+|.|..+|++|+++||+.+|.| +.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~---~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAG---KRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhh---hhhc
Confidence 44578999999999999999999999999999987764 457999999999999999999999999999 8888
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=1.4e-08 Score=72.08 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=44.4
Q ss_pred CHHHHHHHHH----hCCCCcccEEE-----ee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 62 KERELQNLLR----WLPGYEASQVN-----YK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 62 te~~L~~~f~----~~~~~~g~i~~-----~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.+++|+++|+ .| |.|.. +. ..||||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 1 ~~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 3688999998 66 66532 21 23699999999999999999999999998 888876
No 120
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=7.8e-09 Score=88.19 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=69.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~ 303 (328)
..+||++|++.+.+.+|..+|..||.|..+.+.. ||+||+|.|..+|..|+..|||.+|.+ -.+.|+|++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~---e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCG---ERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecc---eeeeeecccccc
Confidence 3599999999999999999999999999999874 899999999999999999999999999 459999999765
Q ss_pred CCC
Q 020297 304 GKR 306 (328)
Q Consensus 304 ~~~ 306 (328)
+.+
T Consensus 75 ~~~ 77 (216)
T KOG0106|consen 75 RGR 77 (216)
T ss_pred ccc
Confidence 554
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.7e-09 Score=106.38 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=113.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccE----EEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i----~~~----~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
.++||+||+..+.+++|...|..+ +++ +.+ +..||+|+|.|.+.++|.+|+.-..++.+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh--------
Confidence 467999999999999999999988 544 222 123699999999999999999844443332
Q ss_pred EEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (328)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (328)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHH
Q 020297 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al 278 (328)
...|||.|+|+..|.++|+.+|..+|.+.+++++..+. +|.+||.|.+..+|.+++
T Consensus 736 ---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 736 ---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred ---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 13499999999999999999999999999998865444 899999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020297 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 279 ~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
..+.+..+.. +.+.|..+.+.
T Consensus 795 ~s~d~~~~rE---~~~~v~vsnp~ 815 (881)
T KOG0128|consen 795 ASVDVAGKRE---NNGEVQVSNPE 815 (881)
T ss_pred ccchhhhhhh---cCccccccCCc
Confidence 9999999988 78888885553
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=6.6e-08 Score=82.99 Aligned_cols=74 Identities=26% Similarity=0.492 Sum_probs=67.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..+||.|.|..+++++-|...|.+|-.+...+++++.+ +||+||.|.+.+++..||..|||.-++. +.|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs---rpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS---RPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc---chhHhhh
Confidence 46899999999999999999999999999998887665 8999999999999999999999999998 8888754
Q ss_pred e
Q 020297 299 S 299 (328)
Q Consensus 299 a 299 (328)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=4.7e-08 Score=87.34 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=62.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHh-cCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l-~g~~~~~~~gr~l~v~ 123 (328)
.-.++|||++|...++|.+|++.|+.| |.| +.+-..++||||+|.+.++|++|.+.+ +-..|. |++|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~---G~Rl~i~ 298 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVIN---GFRLKIK 298 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeec---ceEEEEE
Confidence 347899999999999999999999999 887 333455789999999999999988655 544556 9999999
Q ss_pred Eccc
Q 020297 124 MAKK 127 (328)
Q Consensus 124 ~a~~ 127 (328)
|++.
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.72 E-value=1.7e-08 Score=91.03 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=120.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-----e---CCcceEEEEeCCHHHHHHHHHHhcCc-eeCCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K---GEKPMGFALFSTAQLAVAAKDALQEM-IFDAETKS 118 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-----~---~~kg~aFV~F~~~~~A~~A~~~l~g~-~~~~~~gr 118 (328)
...++|++++.+.+.+.++..++... |..+.. . ..+|++.|.|...+.+..|++ +.+. ..+ ++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~----g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~---~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEA----GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLD---GN 158 (285)
T ss_pred ccccccccccccchhhccccccchhh----cCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccc---cc
Confidence 36789999999999999888888888 544322 1 347999999999999999998 4443 444 34
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.+...+......... ...
T Consensus 159 ~~~~dl~~~~~~~~~---------------------n~~----------------------------------------- 176 (285)
T KOG4210|consen 159 KGEKDLNTRRGLRPK---------------------NKL----------------------------------------- 176 (285)
T ss_pred cccCccccccccccc---------------------chh-----------------------------------------
Confidence 444433321110000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (328)
.....+...+.++|+||++++++++|+..|..+|.|..+++..... +|||+|+|.+.+.+
T Consensus 177 ----------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 177 ----------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred ----------------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 0000111123455999999999999999999999999999976554 88999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
..++.. +...+.+ +.++|.+.+..
T Consensus 241 ~~~~~~-~~~~~~~---~~~~~~~~~~~ 264 (285)
T KOG4210|consen 241 KLALND-QTRSIGG---RPLRLEEDEPR 264 (285)
T ss_pred HHHhhc-ccCcccC---cccccccCCCC
Confidence 999988 8889998 89999998766
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.70 E-value=8.3e-08 Score=90.64 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.-.|+|||.+|...+.-.+|++||++|+.+.|.-|... +-+=|+||++.+.++|.+||+.|+.+.+. |+.|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeeee
Confidence 34789999999999999999999999944333322221 23589999999999999999999999999 999999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
+-+++.
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 998765
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.57 E-value=1.5e-05 Score=74.64 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEe-eCC--cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY-KGE--KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~-~~~--kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
....|=+++||+.||++||.++|+-...+---| +.+ ... .|-|||+|++.+.|++|+. -|...|. .|=|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iG---hRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIG---HRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhc---cceEEee
Confidence 356788999999999999999999884332223 333 222 3999999999999999987 5566665 3667776
Q ss_pred Ecc
Q 020297 124 MAK 126 (328)
Q Consensus 124 ~a~ 126 (328)
.+.
T Consensus 178 ~Ss 180 (510)
T KOG4211|consen 178 RSS 180 (510)
T ss_pred hhH
Confidence 553
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.7e-07 Score=80.49 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=68.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.++|+|.||+..+++++|+++|..||.++.+-+.-+.. .|+|=|.|...++|.+|++.+||..++| +.|++...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG---~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG---RPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC---ceeeeEEe
Confidence 47899999999999999999999999998888865444 6899999999999999999999999999 89999885
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
..+
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 443
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.53 E-value=1.1e-07 Score=86.24 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=117.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--e---------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K---------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~---------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
...|-|.||...+|.++++.||..+ |.|-.+ . .....|||.|.|..++..|.. |..++|- +
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv---d 78 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV---D 78 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee---e
Confidence 3489999999999999999999888 766222 1 234899999999999999987 7777775 4
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
+.|.|-..-..-... ..++...+... ..+... .+....++.-+....+..+-...
T Consensus 79 raliv~p~~~~~~p~------r~af~~l~~~n------------avprll-------~pdg~Lp~~~~lt~~nh~p~ail 133 (479)
T KOG4676|consen 79 RALIVRPYGDEVIPD------RFAFVELADQN------------AVPRLL-------PPDGVLPGDRPLTKINHSPNAIL 133 (479)
T ss_pred eeEEEEecCCCCCcc------HHHHHhcCccc------------cccccc-------CCCCccCCCCccccccCCcccee
Confidence 677665432211100 00110000000 000000 00001111111111111100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSV 277 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~A 277 (328)
.. +.. +. .........-.+|++|++|...+...++..+|..||+|.+.++.......+|-|.|....+-..|
T Consensus 134 kt---P~L--p~---~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 134 KT---PEL--PP---QAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cC---CCC--Ch---HhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHH
Confidence 00 000 00 00000111124789999999999999999999999999999997656677888999988888888
Q ss_pred HHHhCCCeeCC
Q 020297 278 HHNLQGAVIPS 288 (328)
Q Consensus 278 l~~lnG~~i~g 288 (328)
+. ++|+++.-
T Consensus 206 lr-~~gre~k~ 215 (479)
T KOG4676|consen 206 LR-SHGRERKR 215 (479)
T ss_pred HH-hcchhhhh
Confidence 87 68887754
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=5.1e-07 Score=75.45 Aligned_cols=77 Identities=14% Similarity=0.342 Sum_probs=64.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---e-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
......+||+.+|.-+.+.++..+|..|+ |.+.++ + ++||||||+|++.+.|..|-+.||++.|+ +
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e 119 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---E 119 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---h
Confidence 34456799999999999999999999984 333332 1 34799999999999999999999999998 8
Q ss_pred CeEEEEEcccc
Q 020297 118 SVLHTEMAKKN 128 (328)
Q Consensus 118 r~l~v~~a~~~ 128 (328)
+.|.|.+-...
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 99999987654
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.48 E-value=2.8e-07 Score=83.41 Aligned_cols=74 Identities=8% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCC-eeE--EEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPG-FKQ--MKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~--v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
...|-+++||+..+.|+|.++|..|-. |.. |.++-+.. .|-|||+|.+.++|..|.+.-|.....+ |-|.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~---RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS---RYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc---ceEEE
Confidence 456888999999999999999988863 332 55543322 7899999999999999999988877766 77777
Q ss_pred Eee
Q 020297 297 QYS 299 (328)
Q Consensus 297 ~~a 299 (328)
.-+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 653
No 131
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.46 E-value=6.4e-07 Score=80.16 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCe--------eEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGF--------KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i--------~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
.++.|||.|||.++|.+|+..+|+++|.| -.|+|.++.. +|=|.+.|...++...|++.|++..|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg-- 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG-- 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC--
Confidence 36779999999999999999999999977 3567776554 8999999999999999999999999999
Q ss_pred CceeEEEeecCCCCCCC
Q 020297 291 SVGMRIQYSKNPFGKRK 307 (328)
Q Consensus 291 ~~~l~V~~ak~~~~~~~ 307 (328)
+.|+|+-|+-.+....
T Consensus 211 -~~~rVerAkfq~Kge~ 226 (382)
T KOG1548|consen 211 -KKLRVERAKFQMKGEY 226 (382)
T ss_pred -cEEEEehhhhhhccCc
Confidence 9999999887654433
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=7.3e-07 Score=83.91 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC--C--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--R--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~--~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..+|||+|||.++++++|.++|.+||.|+...|.... + .+||||+|.+.++++.||.+ +-..|++ ++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~---~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGG---RKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCC---eeEEEEe
Confidence 4569999999999999999999999999998885422 2 48999999999999999986 4677777 8999998
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
.+..
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7763
No 133
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.2e-06 Score=62.70 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=48.5
Q ss_pred CeEEEeCCCCCCCHHHH----HHHhccCCC-eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 224 NTLFIGNLGESINEEEL----RGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L----~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
+.|||.|||.+.+...| +.++...|. |.+| . .+.|+|.|.+.+.|.+|.+.|+|..+.| ++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVFG---NKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhccccccc---ceEEEEE
Confidence 56999999999888655 466667774 5555 2 3789999999999999999999999999 8999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7533
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=2e-06 Score=64.53 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=61.5
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCC-CCcccE-EEe--e--CCcceEEEEeCCHHHHHHHHHHhcCceeCC-CCCCeEEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLP-GYEASQ-VNY--K--GEKPMGFALFSTAQLAVAAKDALQEMIFDA-ETKSVLHT 122 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~-~~~g~i-~~~--~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~-~~gr~l~v 122 (328)
+||-|+|||-..|.++|.+++...+ +.+.-+ +.+ + .+.|||||.|.+.+.|.+-.+.++|..|.. ...+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999998763 222222 333 2 345999999999999999999999999942 22577788
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888644
No 135
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.9e-07 Score=81.04 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe------eC-C-cceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY------KG-E-KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~------~~-~-kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.++...|||-.|.+-+|.++|.-+|++| |.|+.+ ++ . --||||+|++.+++++|.=.|++..|+ .
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID---D 308 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID---D 308 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---c
Confidence 3567899999999999999999999999 665332 11 1 279999999999999999999999998 6
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|+|+.+-++
T Consensus 309 rRIHVDFSQSVsk 321 (479)
T KOG0415|consen 309 RRIHVDFSQSVSK 321 (479)
T ss_pred ceEEeehhhhhhh
Confidence 9999999876554
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.4e-07 Score=79.35 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=66.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.+||||+|+-..++|+-|.++|-+.|.|..|.|....+ ..||||.|.++.+..-|++.|||-.+.+ +.|+|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~---~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE---DEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc---chhhccc
Confidence 58999999999999999999999999999999964433 4499999999999999999999999999 8888877
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2e-06 Score=61.66 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=49.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCC-CcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPG-YEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~-~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
..|||.|||.+.....|+.-+.+... --|.|+.+.+ +.|.|.|.+.+.|.+|++-|+|..+. |+.|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~--~tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSG--GTAILRFPNQEFAERAQKRMEGEDVF---GNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--T--T-EEEEESSHHHHHHHHHHHTT--SS---SS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeC--CEEEEEeCCHHHHHHHHHhhcccccc---cceEEEEEcCCc
Confidence 35999999999998887766665532 2356777754 89999999999999999999999998 899999998543
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.9e-06 Score=75.32 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=62.9
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE----ee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN----YK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~----~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
..+|+|.||++.|+++||++||+.| +.+.. +. .+.|+|-|.|...++|.+|++.++|+.++ |+.|+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~mk 155 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPMK 155 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---Cceee
Confidence 4789999999999999999999999 54422 22 22499999999999999999999998888 99999
Q ss_pred EEEcccccc
Q 020297 122 TEMAKKNLF 130 (328)
Q Consensus 122 v~~a~~~~~ 130 (328)
+........
T Consensus 156 ~~~i~~~~~ 164 (243)
T KOG0533|consen 156 IEIISSPSQ 164 (243)
T ss_pred eEEecCccc
Confidence 987755443
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=84.55 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----------CCcceEEEEeCCHHHHHHHHHHhcCceeCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~ 114 (328)
.+.+++|||+||+..++|+.|-..|-+| |.|..++ ..+.||||.|-+..+|++|++.|+|+.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~- 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM- 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-
Confidence 4557889999999999999999999999 6663332 23599999999999999999999999998
Q ss_pred CCCCeEEEEEcccc
Q 020297 115 ETKSVLHTEMAKKN 128 (328)
Q Consensus 115 ~~gr~l~v~~a~~~ 128 (328)
+..+++-|++.-
T Consensus 246 --~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 --EYEMKLGWGKAV 257 (877)
T ss_pred --eeeeeecccccc
Confidence 799999999754
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.34 E-value=6.9e-05 Score=72.96 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=60.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i-~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
++.|-+.|+|++++-+||.++|.-|-.+ -+|.+..+.+ .|-|.|.|++.++|..|...|+++.|.. +.++|-
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n---r~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN---RVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc---eeEEEE
Confidence 4578899999999999999999999755 4455544333 7789999999999999999999999998 787764
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=3.4e-06 Score=79.49 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=58.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE----EEeeC--Cc--ceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYKG--EK--PMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i----~~~~~--~k--g~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.....+|||+|||.++++++|+++|..| |.| |.++. .+ .||||+|++.+++..|+++- -..+. +
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig---~ 356 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG---G 356 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC---C
Confidence 3445669999999999999999999999 666 33332 33 89999999999999999855 44555 7
Q ss_pred CeEEEEEccc
Q 020297 118 SVLHTEMAKK 127 (328)
Q Consensus 118 r~l~v~~a~~ 127 (328)
+.|.|+--+.
T Consensus 357 ~kl~Veek~~ 366 (419)
T KOG0116|consen 357 RKLNVEEKRP 366 (419)
T ss_pred eeEEEEeccc
Confidence 9999975443
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=1e-06 Score=77.04 Aligned_cols=77 Identities=14% Similarity=0.342 Sum_probs=68.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
....+||+|+.+.+|.+++...|+.+|.|..+.|..+.. +||+||+|.+.+..+.|++ |||..|.+ +.++|.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~---~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG---PAIEVT 175 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc---ccceee
Confidence 357899999999999999999999999998777754433 7899999999999999999 99999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97655
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.31 E-value=4.4e-06 Score=62.68 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=62.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccC--CCeeEE--EE--EecCCcceEEEEEccHHHHHHHHHHhCCCeeCCC-CCceeEE
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQ--PGFKQM--KV--LRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS-GSVGMRI 296 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~--G~i~~v--~i--~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~-~~~~l~V 296 (328)
+||-|+|+|...|.++|.+++... |.+.-+ .+ ...-+.|||||.|.+.+.|.+-.+.+||..+... .++...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888653 444333 33 2223489999999999999999999999999632 1368899
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 999866
No 144
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.30 E-value=6.8e-07 Score=81.10 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=63.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.+.|||++|.+++++|.|++.|++||+|.++.++++.. ++|+||+|.+.+.-..+|.. --..|.| +.|.+.=
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg---r~ve~k~ 81 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG---RSVEPKR 81 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCC---cccccee
Confidence 67899999999999999999999999999999997654 89999999999998888764 3345666 6666555
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+-++
T Consensus 82 av~r 85 (311)
T KOG4205|consen 82 AVSR 85 (311)
T ss_pred ccCc
Confidence 5444
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=2.1e-05 Score=71.52 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=101.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCc-ccEEEe--eCCc-ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYE-ASQVNY--KGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~-g~i~~~--~~~k-g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
+.+..+=.++||+.-++.+|-.+|.-.-... |..+.. .++| |+|+|.|.|.|.=+.|++ -+...+. +|.+.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g---~ryiev 133 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMG---TRYIEV 133 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhcc---CCceee
Confidence 4455666899999999999999998663333 333443 2333 999999999998888887 4555555 577777
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.-+...+..+.. + +... .
T Consensus 134 Yka~ge~f~~ia----g-------------------g~s~--------------e------------------------- 151 (508)
T KOG1365|consen 134 YKATGEEFLKIA----G-------------------GTSN--------------E------------------------- 151 (508)
T ss_pred eccCchhheEec----C-------------------Cccc--------------c-------------------------
Confidence 545433322210 0 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhc---cC-CCeeEEEEEecCC---cceEEEEEccHHHHH
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS---AQ-PGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~---~~-G~i~~v~i~~~~~---~g~aFV~F~~~~~A~ 275 (328)
...-........|-.++||+++++.++.++|. .. |..+.|.+++..+ .|-|||.|..+++|+
T Consensus 152 -----------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 152 -----------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred -----------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 00000000123456789999999999999996 32 3566666655433 789999999999999
Q ss_pred HHHHH
Q 020297 276 SVHHN 280 (328)
Q Consensus 276 ~Al~~ 280 (328)
.||..
T Consensus 221 ~aL~k 225 (508)
T KOG1365|consen 221 FALRK 225 (508)
T ss_pred HHHHH
Confidence 99975
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.26 E-value=2.9e-06 Score=65.04 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=40.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
..|+|.+++..++.++|+++|+.||.|..|++. .+...|+|.|.+.+.|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE----TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec--CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999996 34568999999999999999987544
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.86 E-value=1.9e-05 Score=68.10 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=61.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCccc-EEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~-i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.-+||+|.|.-+++++.|-+.|.+|..+.+. +++-+ ..|||+||.|.+.+++.+|+..|+|.-+. .|+|+..
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg---srpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG---SRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc---cchhHhh
Confidence 5789999999999999999999999877664 34432 24699999999999999999999999997 4777664
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.78 E-value=0.00027 Score=69.01 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCC----cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
...+.|-|.|+|++++.+||.++|+.|.-.-+.|+.-.+. .|-|.|-|++.++|++|...|++..|. .|.+.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~---nr~V~l 941 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR---NRVVSL 941 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc---ceeEEE
Confidence 3356888999999999999999999996555665444333 399999999999999999999999998 477766
Q ss_pred E
Q 020297 123 E 123 (328)
Q Consensus 123 ~ 123 (328)
.
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 4
No 149
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.76 E-value=5.8e-05 Score=67.56 Aligned_cols=77 Identities=14% Similarity=0.311 Sum_probs=62.7
Q ss_pred CCeEEEeCCCCCCCHHH----H--HHHhccCCCeeEEEEEecCC-----cc--eEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 223 CNTLFIGNLGESINEEE----L--RGLFSAQPGFKQMKVLRQER-----HT--VCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~----L--~~~F~~~G~i~~v~i~~~~~-----~g--~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
..-+||-+|++.+-.|+ | .+.|++||.|..+.|-+... .+ -.||+|.+.++|.+||....|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 45689999999877666 3 27899999999998854321 12 24999999999999999999999999
Q ss_pred CCceeEEEeecCC
Q 020297 290 GSVGMRIQYSKNP 302 (328)
Q Consensus 290 ~~~~l~V~~ak~~ 302 (328)
|.|+..|+--+
T Consensus 193 --r~lkatYGTTK 203 (480)
T COG5175 193 --RVLKATYGTTK 203 (480)
T ss_pred --ceEeeecCchH
Confidence 99999997544
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.71 E-value=5.3e-05 Score=69.89 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=56.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-----------------CcceEEEEEccHHHHHHHHHHhCCC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------------RHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-----------------~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
+.+||.+.|||.+-.-+-|..||+.+|.|+.|+|.... .+-||||+|...+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 57999999999998889999999999999999997541 1569999999999999999988655
Q ss_pred eeC
Q 020297 285 VIP 287 (328)
Q Consensus 285 ~i~ 287 (328)
.-.
T Consensus 310 ~~w 312 (484)
T KOG1855|consen 310 QNW 312 (484)
T ss_pred hhh
Confidence 433
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.60 E-value=9.8e-05 Score=64.65 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
....+.+||+|+.+.+|.+++..-|+.+++..+..+.+. ..|||+||+|.+.+.++.|+. |+|..+. |+.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~---~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP---GPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---cccce
Confidence 455889999999999999999999999933332223332 247999999999999999999 9999998 89999
Q ss_pred EEEcccc
Q 020297 122 TEMAKKN 128 (328)
Q Consensus 122 v~~a~~~ 128 (328)
|.+.+-.
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9876543
No 152
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.52 E-value=8.7e-05 Score=74.27 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 214 VQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 214 ~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
+...++...+.|||++||+..+++.+|+..|..||.|.+|+|.+..- -.|+||.|.+..++-.|...|.|..|..
T Consensus 363 v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~-- 440 (975)
T KOG0112|consen 363 VLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN-- 440 (975)
T ss_pred cccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc--
Confidence 34455666789999999999999999999999999999999976422 4599999999999999999999999987
Q ss_pred CceeEEEeec
Q 020297 291 SVGMRIQYSK 300 (328)
Q Consensus 291 ~~~l~V~~ak 300 (328)
..+++.|+.
T Consensus 441 -g~~r~glG~ 449 (975)
T KOG0112|consen 441 -GTHRIGLGQ 449 (975)
T ss_pred -Ccccccccc
Confidence 577777764
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00031 Score=46.72 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=43.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHH
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al 278 (328)
+.|-|.+.+.... +.++..|..||+|+.+.+. .+..+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 4677888887754 5566699999999999885 45689999999999999985
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.00038 Score=60.37 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=51.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCee
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i 286 (328)
.|||.||..-++-|.|.+.|+.||.|....+..+.. .+-++|.|...-.|.+|+...+-..+
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 499999999999999999999999998776654333 56799999999999999988744333
No 155
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.45 E-value=0.00079 Score=54.00 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=53.5
Q ss_pred CCCCCeEEEeCCC----C--CCCH---HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 220 NPPCNTLFIGNLG----E--SINE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 220 ~~~~~~LfV~NL~----~--~~te---~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
+|+..||.|.=+. . ..++ .+|.+.|..||++.-+|+.. +.-+|+|.+-++|.+|++ |+|.+|+|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g-- 96 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNG-- 96 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETT--
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECC--
Confidence 3445667665444 1 2232 37788999999999999984 468999999999999997 99999999
Q ss_pred CceeEEEeecC
Q 020297 291 SVGMRIQYSKN 301 (328)
Q Consensus 291 ~~~l~V~~ak~ 301 (328)
+.|+|...-+
T Consensus 97 -~~l~i~LKtp 106 (146)
T PF08952_consen 97 -RTLKIRLKTP 106 (146)
T ss_dssp -EEEEEEE---
T ss_pred -EEEEEEeCCc
Confidence 9999987543
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.42 E-value=0.00038 Score=66.81 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE---EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i---~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.....|||.||=.-.|.-.|+.|+.+- |.+ ..|..-|..|||.|.+.++|..-+.+|||..|-..+++.|.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rt----gg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRT----GGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhc----cCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 346789999999999999999999977 443 2345556899999999999999999999999977778999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
|....
T Consensus 518 f~~~d 522 (718)
T KOG2416|consen 518 FVRAD 522 (718)
T ss_pred ecchh
Confidence 98543
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.41 E-value=0.0002 Score=64.20 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=61.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHHH--hCCCCcccEEEee----CC-----cceE--EEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 50 RTIFITGLPDDVKERELQNLLR--WLPGYEASQVNYK----GE-----KPMG--FALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~--~~~~~~g~i~~~~----~~-----kg~a--FV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
.-+||-+|+..+..|+...++. .|||-+|.|.++- .. .+.+ +|+|.+.++|.+||+..+|..++
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D--- 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD--- 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc---
Confidence 3479999999999888766665 4467779996652 10 1444 99999999999999999999999
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
||.|+..|...+.
T Consensus 192 Gr~lkatYGTTKY 204 (480)
T COG5175 192 GRVLKATYGTTKY 204 (480)
T ss_pred CceEeeecCchHH
Confidence 9999999987664
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.39 E-value=0.00022 Score=64.71 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCee--------EEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeC
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~--------~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~ 287 (328)
...+.++||-+|+.++++++|.+.|.+.|.|. .++|.+++ .|+-|.|+|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44578999999999999999999999999773 23333322 3889999999999999999999999999
Q ss_pred CCCCceeEEEeecCCC
Q 020297 288 SSGSVGMRIQYSKNPF 303 (328)
Q Consensus 288 g~~~~~l~V~~ak~~~ 303 (328)
+ ..|+|.++..+.
T Consensus 143 g---n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 G---NTIKVSLAERRT 155 (351)
T ss_pred C---CCchhhhhhhcc
Confidence 9 899999987664
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.21 E-value=0.0002 Score=62.01 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----------------cceEEEEEccHHHHHHHHHHhCCCee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----------------HTVCFIEFEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----------------~g~aFV~F~~~~~A~~Al~~lnG~~i 286 (328)
.-.||++|||+.++...||++|++||.|-.|.+-.... -.-|.|+|.+...|..+-..|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999999999998843221 11588999999999999999999999
Q ss_pred CC
Q 020297 287 PS 288 (328)
Q Consensus 287 ~g 288 (328)
+|
T Consensus 154 gg 155 (278)
T KOG3152|consen 154 GG 155 (278)
T ss_pred CC
Confidence 98
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.20 E-value=0.0022 Score=48.51 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=52.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEE-E----------EecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMK-V----------LRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~-i----------~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
.+-|.|-+.|.. ....|.+.|++||.|++.. + ....+.++--|+|.++.+|.+||+ -||..|.|+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~-- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS-- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC--
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc--
Confidence 456888888888 4567888999999998875 0 112457899999999999999998 699999982
Q ss_pred ceeEEEeec
Q 020297 292 VGMRIQYSK 300 (328)
Q Consensus 292 ~~l~V~~ak 300 (328)
--+-|.|.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 344466653
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.19 E-value=0.00091 Score=51.24 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=36.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~ 110 (328)
..|.|.++...++-++|+++|..| |.| |.+...-..|+|.|.+.+.|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468999999999999999999999 888 444444478999999999999999887544
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00043 Score=66.50 Aligned_cols=80 Identities=19% Similarity=0.413 Sum_probs=67.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
-+...+.|||.||-..+|.-.|+.++.+-|. |+++ +| ++-+.-|||.|.+.++|...+.+|||..+..+.-+.|-+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 4556789999999999999999999997664 5666 44 3556779999999999999999999999977655789888
Q ss_pred eec
Q 020297 298 YSK 300 (328)
Q Consensus 298 ~ak 300 (328)
|+.
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 875
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.13 E-value=0.0006 Score=62.40 Aligned_cols=75 Identities=15% Similarity=0.389 Sum_probs=61.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-------cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..|.|.||.++++.+.+..||...|.|.+++|+...+ .-.|||.|.|..++..| +.|-++++-+ +.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvd---raliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVD---RALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeee---eeEEE
Confidence 4799999999999999999999999999999975333 55899999999999988 5687777777 55554
Q ss_pred -EeecCC
Q 020297 297 -QYSKNP 302 (328)
Q Consensus 297 -~~ak~~ 302 (328)
-|+...
T Consensus 84 ~p~~~~~ 90 (479)
T KOG4676|consen 84 RPYGDEV 90 (479)
T ss_pred EecCCCC
Confidence 444433
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.11 E-value=0.00025 Score=61.56 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=51.0
Q ss_pred HHHHHHhc-cCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 238 EELRGLFS-AQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 238 ~~L~~~F~-~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
++|...|+ +||+|++++|-.+.. .|-++|.|...++|++|++.|||.-+.| ++|...++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G---~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG---RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC---CcceeeecC
Confidence 45555666 999999998865443 7889999999999999999999999999 999988853
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.0021 Score=56.78 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=58.0
Q ss_pred CCCeEEEeCCCC--CCC---HHHHHHHhccCCCeeEEEEEecCC-----cceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 222 PCNTLFIGNLGE--SIN---EEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 222 ~~~~LfV~NL~~--~~t---e~~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
+++.|.++|+-. .++ +++++..+.+||.|..|.|+-..+ .---||+|...++|.+|+-.|||+-|+|
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG--- 356 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG--- 356 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc---
Confidence 344566665532 233 467889999999999998864443 2358999999999999999999999999
Q ss_pred ceeEEEee
Q 020297 292 VGMRIQYS 299 (328)
Q Consensus 292 ~~l~V~~a 299 (328)
+.++..|-
T Consensus 357 r~v~A~Fy 364 (378)
T KOG1996|consen 357 RVVSACFY 364 (378)
T ss_pred eeeeheec
Confidence 88887774
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0025 Score=61.11 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=56.8
Q ss_pred cceEEEcCCCC--cCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 49 VRTIFITGLPD--DVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 49 ~~~LfV~nLp~--~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
...|+|-|+|- ....+.|+.++.+.+...|.++.+. +.+||.|++|.+..+|..|++.|||..++. ..+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk--nHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK--NHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc--cce
Confidence 56789999984 3556666666555555559887762 347999999999999999999999999964 566
Q ss_pred EEEEE
Q 020297 120 LHTEM 124 (328)
Q Consensus 120 l~v~~ 124 (328)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.002 Score=61.66 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCCC--C----HHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCce
Q 020297 223 CNTLFIGNLGESI--N----EEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (328)
Q Consensus 223 ~~~LfV~NL~~~~--t----e~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~ 293 (328)
...|+|-|+|.-- - ...|..+|+++|.|..+.+.-+. .+||.|++|.+..+|..|++.|||+.|+-+ +.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Ht 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ce
Confidence 4678899988421 1 13456899999999988885332 289999999999999999999999999985 66
Q ss_pred eEEEe
Q 020297 294 MRIQY 298 (328)
Q Consensus 294 l~V~~ 298 (328)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66643
No 168
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.71 E-value=0.0078 Score=47.79 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=57.3
Q ss_pred CCCCCeEEEeCCCCCCC-HHHHH---HHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESIN-EEELR---GLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~t-e~~L~---~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
.++-.||.|+=|..++. .+||+ ..++.||.|.+|.+. ++.-|.|.|.|..+|=+|+.+++.. ..| ..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s~-~pg---tm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQSR-APG---TMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcCC-CCC---ceEE
Confidence 34567888987776653 34454 566789999999986 3567999999999999999999984 445 6999
Q ss_pred EEeec
Q 020297 296 IQYSK 300 (328)
Q Consensus 296 V~~ak 300 (328)
++|--
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99953
No 169
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.65 E-value=0.011 Score=40.35 Aligned_cols=54 Identities=17% Similarity=0.385 Sum_probs=44.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccC---CCeeEEEEEecCCcceEEEEEccHHHHHHHHHHh
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQ---PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (328)
..|+|++++ +++.++|+..|..| .....|..+.+.+ |-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 569999996 57889999999999 2356788886644 899999999999999875
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.64 E-value=0.0018 Score=59.94 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=58.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC-eeCCCCCceeEEEeec
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA-VIPSSGSVGMRIQYSK 300 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~-~i~g~~~~~l~V~~ak 300 (328)
+.||++||.+.++..+|+++|... +.-..+.+. .||+||.+.|..-|.+|++.++|. ++.| +++.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqG---kr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQG---KRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcC---ceeeccchh
Confidence 359999999999999999999754 222233222 489999999999999999999996 6777 899999876
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
++
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 55
No 171
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.61 E-value=0.0026 Score=57.90 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE----------EEee------CCcceEEEEeCCHHHHHHHHHHhcCc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----------VNYK------GEKPMGFALFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i----------~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~ 110 (328)
..+.+|||-+|+..+++++|.++|..+ +.| |.+. ..||-|.|.|+|.-.|+.|+..+++.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 457899999999999999999999998 444 1111 13699999999999999999999999
Q ss_pred eeCCCCCCeEEEEEcccccc
Q 020297 111 IFDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 111 ~~~~~~gr~l~v~~a~~~~~ 130 (328)
.|. |.+|+|.++..+..
T Consensus 140 df~---gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFC---GNTIKVSLAERRTG 156 (351)
T ss_pred ccc---CCCchhhhhhhccC
Confidence 998 79999988876553
No 172
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.0053 Score=58.37 Aligned_cols=74 Identities=26% Similarity=0.307 Sum_probs=55.1
Q ss_pred CCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE----EEee----CCcceEEEEeCCHHHHHHHHHH----hcCc
Q 020297 43 RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNYK----GEKPMGFALFSTAQLAVAAKDA----LQEM 110 (328)
Q Consensus 43 ~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i----~~~~----~~kg~aFV~F~~~~~A~~A~~~----l~g~ 110 (328)
...-++.+|||||+||.-++-++|-.+|++.+ |.| |... --||-|=|.|++..+=.+||.+ |+..
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~ly---GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~ 440 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLF---GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHT 440 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhc---CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecc
Confidence 33457899999999999999999999999442 444 3322 2259999999999999999974 3444
Q ss_pred eeCCCCCCeEEEE
Q 020297 111 IFDAETKSVLHTE 123 (328)
Q Consensus 111 ~~~~~~gr~l~v~ 123 (328)
+|. +++.|+
T Consensus 441 d~~----KRVEIk 449 (520)
T KOG0129|consen 441 DID----KRVEIK 449 (520)
T ss_pred ccc----eeeeec
Confidence 554 555554
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.52 E-value=0.0079 Score=39.89 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=40.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeC--CcceEEEEeCCHHHHHHHH
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAK 104 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~--~kg~aFV~F~~~~~A~~A~ 104 (328)
+.|-|.+.+.+..++-|+ .|..| |.|+.+.- .+.+.+|.|++..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~f----GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASF----GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhc----CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 467899999887755555 77789 99988753 4699999999999999985
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.45 E-value=0.043 Score=49.81 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=53.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.-.+|||||-+++|++||-+.+...+-. .++.|+ -+||||+|...+..+..+-++.|-...+. |+.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~--~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH---GQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLA--QFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH---GQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHH--HHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec---CCCC
Confidence 3458999999999999999888877211 223332 24799999999999999999999998987 6555
Q ss_pred EEE
Q 020297 121 HTE 123 (328)
Q Consensus 121 ~v~ 123 (328)
.|.
T Consensus 155 ~V~ 157 (498)
T KOG4849|consen 155 TVL 157 (498)
T ss_pred eee
Confidence 443
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.37 E-value=0.022 Score=38.88 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=44.5
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCccc-EEEeeCCcceEEEEeCCHHHHHHHHHHh
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYKGEKPMGFALFSTAQLAVAAKDAL 107 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~-i~~~~~~kg~aFV~F~~~~~A~~A~~~l 107 (328)
..|+|+++ .+++.++|+.+|..|+...+. -|++-.. ..|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 46999999 569999999999999654443 3666433 35889999999999999865
No 176
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.23 E-value=0.0029 Score=57.33 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCcceEE-EcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIF-ITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~Lf-V~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.+..++| |++|++.+++++|+..|..+ |.|..++ ..+|||+|.|.+..++..++.. +...+. |
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~---~ 253 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG---G 253 (285)
T ss_pred CccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc---C
Confidence 3455666 99999999999999777777 8776653 2359999999999999999886 677777 7
Q ss_pred CeEEEEEcccc
Q 020297 118 SVLHTEMAKKN 128 (328)
Q Consensus 118 r~l~v~~a~~~ 128 (328)
+++++++....
T Consensus 254 ~~~~~~~~~~~ 264 (285)
T KOG4210|consen 254 RPLRLEEDEPR 264 (285)
T ss_pred cccccccCCCC
Confidence 99999987654
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.21 E-value=0.017 Score=46.43 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCcceEEEcCCC-----CcCCHH----HHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLP-----DDVKER----ELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp-----~~~te~----~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
++..||.|.=+. ...-.+ +|-+.|..| |.++-+|--.+.-+|+|.+-++|.+|++ |+|..+. |
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~---g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVN---G 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEET---T
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEEC---C
Confidence 456678777776 223333 445556666 8875554334789999999999999998 9999998 8
Q ss_pred CeEEEEEcc
Q 020297 118 SVLHTEMAK 126 (328)
Q Consensus 118 r~l~v~~a~ 126 (328)
+.|+|....
T Consensus 97 ~~l~i~LKt 105 (146)
T PF08952_consen 97 RTLKIRLKT 105 (146)
T ss_dssp EEEEEEE--
T ss_pred EEEEEEeCC
Confidence 999998653
No 178
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.08 E-value=0.00029 Score=70.30 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=51.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEE--ecC--CcceEEEEEccHHHHHHHHHHhCCCee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVL--RQE--RHTVCFIEFEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~--~~~--~~g~aFV~F~~~~~A~~Al~~lnG~~i 286 (328)
-.++||+||+..+.+++|...|..+|.+..+.+. .+. -||.|+|.|.+.+.+.+|+....+..+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3579999999999999999999999988777664 111 289999999999999999975444333
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.98 E-value=0.0066 Score=54.96 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=61.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G--~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.-.+|||||-+-+|+++|...+...| .|.+++++-+. .||||.|-..+..+..+-|+.|--++|.|. .+..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CCeee
Confidence 34689999999999999999988887 56677765332 299999999999999999999999999983 45555
Q ss_pred Eeec
Q 020297 297 QYSK 300 (328)
Q Consensus 297 ~~ak 300 (328)
.|-|
T Consensus 158 ~~NK 161 (498)
T KOG4849|consen 158 SYNK 161 (498)
T ss_pred ccch
Confidence 5544
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.89 E-value=0.01 Score=55.22 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=50.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---------------------CCcceEEEEeCCHHHHHHHH
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------------------GEKPMGFALFSTAQLAVAAK 104 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---------------------~~kg~aFV~F~~~~~A~~A~ 104 (328)
+-+.|+|.+-|||.+-.-+.|..+|..+ |.|-.++ ..+-||||+|+..+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3578999999999998889999999999 7662221 12589999999999999999
Q ss_pred HHhcCc
Q 020297 105 DALQEM 110 (328)
Q Consensus 105 ~~l~g~ 110 (328)
+.|+..
T Consensus 304 e~~~~e 309 (484)
T KOG1855|consen 304 ELLNPE 309 (484)
T ss_pred Hhhchh
Confidence 988543
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.85 E-value=0.0059 Score=53.09 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=50.5
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--e--------------CCc----ceEEEEeCCHHHHHHHHHHhc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K--------------GEK----PMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~--------------~~k----g~aFV~F~~~~~A~~A~~~l~ 108 (328)
...||+++||..+....|+++|+.| |.|=++ . +++ .-|+|+|.+...|.+.-+.||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999 666222 0 111 458999999999999999999
Q ss_pred CceeC
Q 020297 109 EMIFD 113 (328)
Q Consensus 109 g~~~~ 113 (328)
+..|.
T Consensus 150 n~~Ig 154 (278)
T KOG3152|consen 150 NTPIG 154 (278)
T ss_pred CCccC
Confidence 99997
No 182
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.82 E-value=0.017 Score=56.57 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
++.-++||+|+.+.+..+-++.++..+ |.|..++..+ |||..|....-+.+|+..|+-..++ |..+.++.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~---~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNID---DQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh-hcccchhhHHHHHHHHHHhcccCCC---cchhhccc
Confidence 456789999999999999999999999 9998887666 9999999999999999999888886 56655543
No 183
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.81 E-value=0.031 Score=47.23 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=46.6
Q ss_pred CHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC--CCeeCCCCCceeEEEeecCC
Q 020297 236 NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 236 te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln--G~~i~g~~~~~l~V~~ak~~ 302 (328)
..+.|+++|..|+.+..+...+.- +-..|.|.+.+.|++|+..|+ +..+.| ..|+|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g---~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNG---KRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETT---EE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCC---CceEEEEcccc
Confidence 458899999999999998887433 348999999999999999999 999999 89999999544
No 184
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.73 E-value=0.004 Score=56.32 Aligned_cols=79 Identities=11% Similarity=0.243 Sum_probs=63.2
Q ss_pred CeEEEeCCCCCCCHHHHH---HHhccCCCeeEEEEEecCC-------cceEEEEEccHHHHHHHHHHhCCCeeCCCCCce
Q 020297 224 NTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~---~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~ 293 (328)
.-+||-+|+..+-.+.+. +.|.+||.|..|.+.++.. ..-++|+|...++|..||+..+|+.+.| +.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg---~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG---RA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh---hh
Confidence 457788888776555443 6899999999998876441 2248999999999999999999999999 88
Q ss_pred eEEEeecCCCCC
Q 020297 294 MRIQYSKNPFGK 305 (328)
Q Consensus 294 l~V~~ak~~~~~ 305 (328)
|+.+|+-.++-.
T Consensus 155 lka~~gttkycs 166 (327)
T KOG2068|consen 155 LKASLGTTKYCS 166 (327)
T ss_pred hHHhhCCCcchh
Confidence 999988766543
No 185
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.73 E-value=0.07 Score=40.34 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=51.5
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---------------CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---------------~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
..+-|.|=+.|... ...+-+.|++| |.|++.. .....--|+|.+..+|.+||. .||..+
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 35568888898884 46677899999 9997773 335889999999999999998 999999
Q ss_pred CCCCCCeE-EEEEccc
Q 020297 113 DAETKSVL-HTEMAKK 127 (328)
Q Consensus 113 ~~~~gr~l-~v~~a~~ 127 (328)
. |..| -|.|+++
T Consensus 79 ~---g~~mvGV~~~~~ 91 (100)
T PF05172_consen 79 S---GSLMVGVKPCDP 91 (100)
T ss_dssp T---TCEEEEEEE-HH
T ss_pred c---CcEEEEEEEcHH
Confidence 7 5444 4677743
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.66 E-value=0.0053 Score=53.44 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHhCCCCcccEEEee---C----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 020297 68 NLLRWLPGYEASQVNYK---G----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 68 ~~f~~~~~~~g~i~~~~---~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
++|..+...+|.|..+. + .+|-++|.|...++|++|++.||+-.|. |++|..++....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeecCcC
Confidence 33333333568874442 2 2599999999999999999999999998 999999987543
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.45 E-value=0.014 Score=49.05 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=50.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc--cEEEe----eCC----cceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNY----KGE----KPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g--~i~~~----~~~----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
....+|.||+||+.+||+++.+.+..+.+... ..+.. ... -.-|+|.|.+.++...-.+.++|+.|.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34678999999999999998887766211110 01111 111 167999999999999999999999995444
Q ss_pred C--CeEEEEEcccc
Q 020297 117 K--SVLHTEMAKKN 128 (328)
Q Consensus 117 g--r~l~v~~a~~~ 128 (328)
| ....|+||-.+
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 5 35577887553
No 188
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.36 E-value=0.012 Score=59.10 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
+-..+.++.|..-+.+-.-|..+|..||.|.+.+..++. ..|.|+|...++|..|+++|+|+++...| -+-+|.|+|
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~~g-~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSVTG-APSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCcccccC-CceeEEecc
Confidence 334567788888888999999999999999999987643 57999999999999999999999886543 589999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 54
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.22 E-value=0.084 Score=38.14 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=42.9
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEeeCCcceEEEEeCCHHHHHHHHHHhcC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQE 109 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~~~~kg~aFV~F~~~~~A~~A~~~l~g 109 (328)
.+..||+ .|......||.++|+.| |.| |.+-+. ..|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspf----G~I~VsWi~d-TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPF----GQIYVSWIND-TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCC----CCEEEEEECT-TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccC----CcEEEEEEcC-CcEEEEeecHHHHHHHHHHhcc
Confidence 5667787 99999999999999999 988 555433 5899999999999999988863
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.09 E-value=0.041 Score=46.28 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=51.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhcc-CCCe---eEEEEEecCC------cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc
Q 020297 223 CNTLFIGNLGESINEEELRGLFSA-QPGF---KQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~-~G~i---~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~ 292 (328)
...|.|++||+++||+++.+.++. ++.- .++.-..... -.-|+|.|.+.++...=++.++|+.+.++.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999998887 7765 4444211111 33799999999999999999999988664222
Q ss_pred --eeEEEee
Q 020297 293 --GMRIQYS 299 (328)
Q Consensus 293 --~l~V~~a 299 (328)
.-.|+||
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 3456665
No 191
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.96 E-value=0.1 Score=37.14 Aligned_cols=66 Identities=23% Similarity=0.494 Sum_probs=41.1
Q ss_pred eEEEeCCC--CCCCHHHHHHHhccCCC-----eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 225 TLFIGNLG--ESINEEELRGLFSAQPG-----FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 225 ~LfV~NL~--~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+||| |+. ..++..+|..+++..+. |-.++|.. .|.||+-. .+.|..+++.|++..+.| +.|+|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~-~~~a~~v~~~l~~~~~~g---k~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVP-EEVAEKVLEALNGKKIKG---KKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE--TT-HHHHHHHHTT--SSS-------EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEEC-HHHHHHHHHHhcCCCCCC---eeEEEE
Confidence 5666 444 46899999999988864 56777763 68999865 568999999999999999 999997
Q ss_pred ee
Q 020297 298 YS 299 (328)
Q Consensus 298 ~a 299 (328)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.80 E-value=0.17 Score=40.31 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCCCcceEEEcCCCCcCC-HHHHHHHHHhCCCCcccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 45 AHDEVRTIFITGLPDDVK-ERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~t-e~~L~~~f~~~~~~~g~i~~~~-~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.+++-.||.|+=|..++. .+||+.+..+. ...|.|..+. -.|-.|.|.|+|..+|-+|+.+++.. .. |.-+++
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~-~p---gtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSR-AP---GTMFQC 156 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCC-CC---CceEEe
Confidence 356788999987776643 34565554432 2228887765 34678999999999999999999773 22 677888
Q ss_pred EEcc
Q 020297 123 EMAK 126 (328)
Q Consensus 123 ~~a~ 126 (328)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8753
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.73 E-value=0.19 Score=36.41 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=40.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
...||. .|..--..||.++|+.||.|.-- .+.+ .-|||...+++.|..|++.+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEE-EECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 344555 89999999999999999997544 4434 459999999999999999886
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.47 E-value=0.75 Score=35.42 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
...+.+...+.-++.++|..+.+.+- .|..++|+++.. +-.+.++|.+.++|..=...+||+.+..-+....+|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 34444555666667777776666654 578889987654 668999999999999999999999887644345555553
No 195
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=94.33 E-value=0.38 Score=42.70 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=40.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE---EEeeCCcceEEEEeCCHH
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYKGEKPMGFALFSTAQ 98 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i---~~~~~~kg~aFV~F~~~~ 98 (328)
-...|||+||+.++...||+..+.+. +++ +.+++-.|-||.+|-+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~----~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKR----ECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhc----CCCceeEeeecCCcceeEecCCcc
Confidence 34569999999999999999999999 877 667888899999998743
No 196
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.28 E-value=0.084 Score=51.95 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
+.-++||+|+-..+..+-++.+....|.|.+++... |||-.|.+...+..|+..++-..+++ +.|-+.-.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~---~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDD---QKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCc---chhhccchh
Confidence 357899999999999999999999999999888762 89999999999999999999999988 666655433
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.08 E-value=0.22 Score=44.62 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=52.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.=|-|-+.++. .-.-|..+|++||+|+....- .+.++-.|.|.++-+|++||. -||+.|+| .+.|...
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g----~vmiGVk 265 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDG----DVMIGVK 265 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeecc----ceEEeee
Confidence 34555677765 456788999999999887664 456799999999999999998 59999998 4455443
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.76 E-value=0.11 Score=43.83 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCcccEEEeeCCc--ceEEEEeCCHHHHHHHHHHhc--CceeCCCCCCeEEEEEccc
Q 020297 63 ERELQNLLRWLPGYEASQVNYKGEK--PMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVLHTEMAKK 127 (328)
Q Consensus 63 e~~L~~~f~~~~~~~g~i~~~~~~k--g~aFV~F~~~~~A~~A~~~l~--g~~~~~~~gr~l~v~~a~~ 127 (328)
.+.|+++|..+ +.++.+.-.+ +=..|.|.+.++|.+|+..|+ +..+. |..++|.|+..
T Consensus 9 ~~~l~~l~~~~----~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTY----DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-----SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE----
T ss_pred HHHHHHHHHhc----CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEccc
Confidence 46788888888 7776654332 558999999999999999999 99998 89999999843
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.46 E-value=0.37 Score=33.39 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020297 60 DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (328)
Q Consensus 60 ~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~ 113 (328)
.++.+||+.-|..| .-.--.....|| ||.|.|..+|+++....+|..+.
T Consensus 11 ~~~v~d~K~~Lr~y----~~~~I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY----RWDRIRDDRTGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcC----CcceEEecCCEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 46788999999998 543222222364 89999999999999999999886
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.10 E-value=1.7 Score=33.40 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.....+.+-..|+.++.++|..+.+.+...... +++ + .++=.+++.|.+.++|..-...+||..|..-....-+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~-~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv 89 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEH-IRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV 89 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEE-EEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence 345566777788888888888777777322222 333 2 23568999999999999999999999994322333444
Q ss_pred EEc
Q 020297 123 EMA 125 (328)
Q Consensus 123 ~~a 125 (328)
-|-
T Consensus 90 vfV 92 (110)
T PF07576_consen 90 VFV 92 (110)
T ss_pred EEE
Confidence 443
No 201
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.82 E-value=0.14 Score=44.76 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=56.4
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCC---cceEEEEeCCHHHHHHHHHHhcCcee-CCCCCCeEEEEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE---KPMGFALFSTAQLAVAAKDALQEMIF-DAETKSVLHTEM 124 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~---kg~aFV~F~~~~~A~~A~~~l~g~~~-~~~~gr~l~v~~ 124 (328)
..|||.||+.-+.-|.|.+.|+.|+.++-.|+.+... .+-++|.|...-.|.+|+.....--| +...+++.-|.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999996666666666422 38899999999999999987742222 333355555543
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.79 E-value=0.076 Score=50.21 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=59.1
Q ss_pred CCeEEEeCCCCCC-CHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~~~-te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
.+.|-+.-.++.+ +-++|...|.+||.|+.+.+-.. ---|.|+|.+..+|-+|-. .+|..|++ +.|||.|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnn---r~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNN---RFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecC---ceeEEEEecC
Confidence 4556665555544 56889999999999999988532 2459999999999977754 79999999 9999999776
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 203
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.95 E-value=0.45 Score=42.50 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCcccEEEe----eCC-----cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 020297 63 ERELQNLLRWLPGYEASQVNY----KGE-----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 63 e~~L~~~f~~~~~~~g~i~~~----~~~-----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
++++++-+++| |.|.++ ..+ .---||+|+..++|.+|+-.|||.-|. ||.++..|....
T Consensus 300 ede~keEceKy----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---Gr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKY----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---GRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhh----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---ceeeeheeccHH
Confidence 34667777777 666333 111 245899999999999999999999999 899998887544
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.55 E-value=0.13 Score=52.04 Aligned_cols=74 Identities=20% Similarity=0.107 Sum_probs=62.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCc--ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~k--g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~ 127 (328)
.+.++.|..-..+..-|..+|..| |.++.....| ..|.|.|.+.++|..|+++|+|.+.. ..|-+.+|.|++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhh----cchhhheecccccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEeccc
Confidence 445677778888999999999999 9887766544 78999999999999999999999883 2378999999976
Q ss_pred c
Q 020297 128 N 128 (328)
Q Consensus 128 ~ 128 (328)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.36 E-value=1.3 Score=41.90 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+++|+|-.+|-.++..||..+...+= .|..++|+++.. +-...|+|.+.++|..=.+.+||..|...+--..+|-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 78999999999999999998887664 689999998554 668999999999999999999999987654444555444
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.03 E-value=0.14 Score=46.63 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=55.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCC-----------cceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE-----------KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~-----------kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..-+||-+|+..+-.+.+-+-- .|++.||.|.++... .--++|+|...++|..||...+|+.++ |
T Consensus 77 knlvyvvgl~~~~ade~~l~~~-eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERT-EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---G 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCc-ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---h
Confidence 3457899999887555443322 234566888665311 134899999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|++.+...+.
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 998888876654
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.14 E-value=1.5 Score=42.56 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhcc--CCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHh-------CCCeeCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSA--QPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL-------QGAVIPS 288 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l-------nG~~i~g 288 (328)
.+.|.++-|+..+..|+++.||.. .-.+.++.+..+.+ =||+|++..+|+.|.+.| .|+.|.-
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 578889999999999999999975 45788888865433 699999999999997765 5555554
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=3 Score=40.86 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=63.5
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHhccC----CCeeEEEEEec--------------C---------------------
Q 020297 220 NPPCNTLFIGNLGES-INEEELRGLFSAQ----PGFKQMKVLRQ--------------E--------------------- 259 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~-~te~~L~~~F~~~----G~i~~v~i~~~--------------~--------------------- 259 (328)
...+++|-|-||.++ +.-++|.-+|+.| |.|.+|.|... +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999995 8999999888876 58999998321 1
Q ss_pred ----------------CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 260 ----------------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 260 ----------------~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+-.||.|+|.+.+.|........|.++..+. ..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~-~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA-NKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc-ceeeeeec
Confidence 0239999999999999999999999998853 46666663
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.69 E-value=3.3 Score=29.24 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=36.7
Q ss_pred CcCCHHHHHHHHHhCCCCccc-EEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 59 DDVKERELQNLLRWLPGYEAS-QVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 59 ~~~te~~L~~~f~~~~~~~g~-i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
..++..+|..++....+..+. |=.+.-...|+||+-.. +.|..+++.|++..+. |+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SS---S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 447888999999988665443 43333334799999865 4788899999999998 899999864
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.31 E-value=1.9 Score=31.77 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhc
Q 020297 223 CNTLFIGNLGESINEEELRGLFS 245 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~ 245 (328)
.++|.|.|||..+++|+|++...
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 57899999999999999987653
No 211
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.72 E-value=11 Score=33.85 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=38.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEEecCCcceEEEEEccHH
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQERHTVCFIEFEDVN 272 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~aFV~F~~~~ 272 (328)
.+-||++||+.++--.+|++.+.+.|.+ .++.. +...+-||++|.|..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee--ecCCcceeEecCCcc
Confidence 4569999999999999999999888754 44444 345678999998863
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.64 E-value=9.3 Score=26.45 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 234 SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 234 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.++-++|+..+..|+- ..|... ..| =||.|.|..+|+++....||..+.+ -.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d---~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~---y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD---RTG-FYIVFNDSKEAERCFRAEDGTLFFT---YRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec---CCE-EEEEECChHHHHHHHHhcCCCEEEE---EEEEe
Confidence 4677899999999964 333332 234 4899999999999999999999887 45543
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.33 E-value=12 Score=36.97 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCcceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEee-----------------CC---------------------
Q 020297 46 HDEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYK-----------------GE--------------------- 86 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~~-----------------~~--------------------- 86 (328)
..++++|-|-||.++ +..++|.-+|..|...-|.|+.++ +-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 466899999999987 999999999999988888886652 00
Q ss_pred ----------------c-ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 87 ----------------K-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 87 ----------------k-g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
+ =||.|+|.+.+.|.+..+..+|+.|.. .+..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs-S~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES-SANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc-ccceeeeeec
Confidence 1 489999999999999999999999952 1344444444
No 214
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.68 E-value=1.8 Score=36.11 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=53.7
Q ss_pred CeEEEeCCCCCCCH-----HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCc-eeEEE
Q 020297 224 NTLFIGNLGESINE-----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV-GMRIQ 297 (328)
Q Consensus 224 ~~LfV~NL~~~~te-----~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~-~l~V~ 297 (328)
+++++.+++.++-. ....++|.+|-+..-+++++ ..+..-|-|.+.+.|..|...++++.|.| + .|++-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~---~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNG---KNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCC---CceEEEE
Confidence 56778888865422 33457888887776666653 23345677999999999999999999999 5 78877
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+-.-
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 76433
No 215
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=75.96 E-value=10 Score=37.16 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=41.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhC--CCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWL--PGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~--~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
.+.|+++-||.++.+|+++.||..- ..+..|-.... .-=||+|++..+|+.|...|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N---~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN---DNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec---CceEEEeecchhHHHHHHHHH
Confidence 4567899999999999999999853 12222222222 236899999999999987764
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.60 E-value=2.3 Score=40.63 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=55.4
Q ss_pred cceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 49 VRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 49 ~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
++.|=+.-.|+. -+.++|-.-|..| |.|..+. -..-.|.|+|.+..+|-+|-. .++..|. +|.|+|.|-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avln---nr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLN---NRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhc----CccccccccCchhhheeeeeccccccchhc-cccceec---CceeEEEEe
Confidence 455555666665 3567889999999 8885543 223679999999999988876 8899998 799999998
Q ss_pred ccc
Q 020297 126 KKN 128 (328)
Q Consensus 126 ~~~ 128 (328)
+..
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 764
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.20 E-value=37 Score=30.86 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=42.7
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-CCc-ceEEEEeCCHHHHHHHHHHhcCceeC
Q 020297 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEK-PMGFALFSTAQLAVAAKDALQEMIFD 113 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-~~k-g~aFV~F~~~~~A~~A~~~l~g~~~~ 113 (328)
|=|=++|.... .-|-++|+++ |.|++.- .++ .+-.|.|.+.-+|++||. -||..|+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~c----G~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRC----GEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhh----CeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 33445655544 3556789999 9998873 333 789999999999999998 8899886
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.47 E-value=2.3 Score=37.78 Aligned_cols=68 Identities=15% Similarity=0.363 Sum_probs=43.5
Q ss_pred CCHHHHHHHhccCCCeeEEEEE---------ecCC-----cceE---------EEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 235 INEEELRGLFSAQPGFKQMKVL---------RQER-----HTVC---------FIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 235 ~te~~L~~~F~~~G~i~~v~i~---------~~~~-----~g~a---------FV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
-+++.|+..|..||.|..|+|. ..+. +||+ ||+|.....-..||.+|-|..+.-.+.
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 4678899999999999999882 1111 3443 466666666667777777765421000
Q ss_pred -c----eeEEEeecCC
Q 020297 292 -V----GMRIQYSKNP 302 (328)
Q Consensus 292 -~----~l~V~~ak~~ 302 (328)
+ .++|.|.++.
T Consensus 253 ~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRSR 268 (445)
T ss_pred Ccccccccccccchhh
Confidence 1 5777776654
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.25 E-value=22 Score=33.97 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=52.5
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~ 113 (328)
.+.|+|=-+|..++..||-.++..+......|.-++ .++-..+|.|.+.++|..-.+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 788999999999999999999987733333332223 34678999999999999999999999983
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.71 E-value=2.1 Score=31.52 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLP 74 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~ 74 (328)
.|+|.|+|||..+.+|+|++.++-+|
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~LeIhF 77 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLEIHF 77 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEEEEE
Confidence 68999999999999999999887664
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.27 E-value=9.2 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEEecCCcceEEEEEccHHHHHHHHHH
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ 280 (328)
...|-|.++|...-.++|..+|+.|++ =..|+++.+ ..+|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd---thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD---THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec---ceeEEeecchHHHHHHhhc
Confidence 468889999999888999999999985 244555533 5699999999999999863
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.49 E-value=17 Score=34.27 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=47.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
--+.|=|-++|.....+||-.+|+.|.+.-..|..|.. -+||..|++...|..||- | ++.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--thalaVFss~~~AaeaLt-~-kh~~ 450 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--THALAVFSSVNRAAEALT-L-KHDW 450 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--ceeEEeecchHHHHHHhh-c-cCce
Confidence 35778899999999999999999999544444444432 489999999999999987 4 4444
No 223
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.91 E-value=15 Score=29.55 Aligned_cols=70 Identities=7% Similarity=-0.035 Sum_probs=43.3
Q ss_pred ceEEEcCC-C-CcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 50 RTIFITGL-P-DDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 50 ~~LfV~nL-p-~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
+...|+.+ . ...+-..|.+.+...-+..+.+--..-..++..++|.+.+++.++++ .....+. |..+.+.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~---~~~~~l~ 87 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFN---GHFLILQ 87 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-ccccccc---ccchhhh
Confidence 33445555 3 23677888888877644444442222345899999999999998876 3333444 4445553
No 224
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=61.15 E-value=48 Score=22.32 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCee
Q 020297 237 EEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 237 e~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i 286 (328)
=.++..+|.+.| .|.++......++++--+.+.+.+.|.++|+. +|+++
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 367788898888 68888776544444444455565566666653 55554
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.64 E-value=11 Score=29.33 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=24.7
Q ss_pred eEEEeCCCCC---------CCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccH
Q 020297 225 TLFIGNLGES---------INEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDV 271 (328)
Q Consensus 225 ~LfV~NL~~~---------~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~ 271 (328)
++.|-|++.. ++.++|++.|+.|..++..-+....+ .|+++|+|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 4667777532 35689999999999876444432222 78999999754
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=57.01 E-value=1.7 Score=42.30 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcc----cEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEA----SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g----~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~ 113 (328)
.++|||+|++..++-.+|..++..+.++.- .++..+....+++|+|.---.-..|+.+||++.+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 567999999999999999999998833221 11112334588999999877777777888888774
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=55.96 E-value=16 Score=32.92 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=62.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-----------CcceEEEEEccHHHHHH----HHHHhCC--C
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------RHTVCFIEFEDVNSASS----VHHNLQG--A 284 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-----------~~g~aFV~F~~~~~A~~----Al~~lnG--~ 284 (328)
-++.|...|+..+++=.++...|-+||.|++|.++.+. ......+.|-+++.+.. .++.|+- .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999998654 14578899998877654 4444543 2
Q ss_pred eeCCCCCceeEEEeecCCCCC
Q 020297 285 VIPSSGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 285 ~i~g~~~~~l~V~~ak~~~~~ 305 (328)
.+.. ..|.|+|..-++-+
T Consensus 94 ~L~S---~~L~lsFV~l~y~~ 111 (309)
T PF10567_consen 94 KLKS---ESLTLSFVSLNYQK 111 (309)
T ss_pred hcCC---cceeEEEEEEeccc
Confidence 5566 78999997654333
No 228
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=55.42 E-value=44 Score=21.53 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHhccCC-CeeEEEEEecC-CcceEEEEEccHHHHHHHH
Q 020297 238 EELRGLFSAQP-GFKQMKVLRQE-RHTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 238 ~~L~~~F~~~G-~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al 278 (328)
.++.++|.+.| .|.++.+.... +++...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 56778888887 68888876544 4566677778888777765
No 229
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=52.32 E-value=3.7 Score=37.84 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC
Q 020297 237 EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 237 e~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
...+.++..++|+|..-.+.+--+.|.|||-....+++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888889999887766665567899999999999999999999876
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.02 E-value=33 Score=23.38 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHhccCCCeeEEEE
Q 020297 238 EELRGLFSAQPGFKQMKV 255 (328)
Q Consensus 238 ~~L~~~F~~~G~i~~v~i 255 (328)
.+||+.|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999866655
No 231
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=49.86 E-value=64 Score=22.61 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=33.4
Q ss_pred HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 238 EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 238 ~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
++|.+.+..+| +..+++..-...++.|+-+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677888899 777788643336788888889999888887763
No 232
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.31 E-value=22 Score=29.74 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=49.8
Q ss_pred cceEEEcCCCCcC-CHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC-eEEEEE
Q 020297 49 VRTIFITGLPDDV-KERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-VLHTEM 124 (328)
Q Consensus 49 ~~~LfV~nLp~~~-te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr-~l~v~~ 124 (328)
-.++++.+|...+ +..+.+..|+..+-.+-..+.. -.+.+..-|.|.+.+.|..|.-.+++..|. |+ .++..|
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~---~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFN---GKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccC---CCceEEEEE
Confidence 3457788887663 3334444444443222433322 233467889999999999999999999997 55 777777
Q ss_pred ccc
Q 020297 125 AKK 127 (328)
Q Consensus 125 a~~ 127 (328)
+..
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 754
No 233
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=46.80 E-value=44 Score=27.18 Aligned_cols=58 Identities=21% Similarity=0.092 Sum_probs=39.5
Q ss_pred eEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEeeCC--cceEEEEeCCHHHHHHHHHHhc
Q 020297 51 TIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 51 ~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~~~~--kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
-.|+|+|... .+-++|+..+.........-+..+.- -+.++|+|.-+.+|..-+..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHh
Confidence 3578888722 45567777777664444444444433 2899999999999988887764
No 234
>PRK15464 cold shock-like protein CspH; Provisional
Probab=44.61 E-value=20 Score=25.09 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.2
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 47788888889999997655
No 235
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.53 E-value=44 Score=34.49 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.1
Q ss_pred EcCCCCcCCHHH
Q 020297 54 ITGLPDDVKERE 65 (328)
Q Consensus 54 V~nLp~~~te~~ 65 (328)
+-.||+.++...
T Consensus 607 aPvlP~gLkpKK 618 (1102)
T KOG1924|consen 607 APVLPFGLKPKK 618 (1102)
T ss_pred cccCCCCCCccc
Confidence 445565555443
No 236
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=42.11 E-value=24 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=15.9
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 47777778889999998654
No 237
>PRK10943 cold shock-like protein CspC; Provisional
Probab=42.04 E-value=24 Score=24.54 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=15.9
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 47777778889999998654
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.83 E-value=6.5 Score=38.41 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
.++||++|++++++-++|..++..+..+..+-+.... ..-++.|+|.---.-..|.-+|||..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999999988888764211 14478899976555566667788877766
No 239
>PF14893 PNMA: PNMA
Probab=38.83 E-value=29 Score=32.23 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=34.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE------EEeeCCcceEEEEeCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ------VNYKGEKPMGFALFST 96 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i------~~~~~~kg~aFV~F~~ 96 (328)
+.-|.|.|.+||.++++++|++.+..-....|.. ..-..+.--|||+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 4568899999999999999999988753322322 1111223678999855
No 240
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.17 E-value=1.4e+02 Score=20.83 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCcc-cEEEeeCC--cceEEEEeCCHHHHHHHHHHhc
Q 020297 64 RELQNLLRWLPGYEA-SQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 64 ~~L~~~f~~~~~~~g-~i~~~~~~--kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
++|++.+..+ | ....+.+. -++.|+.+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~----Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEEN----GALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHT----TESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3566666677 7 33566666 6999999999999999888763
No 241
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=37.01 E-value=32 Score=24.33 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.7
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||+=.+
T Consensus 4 G~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEG 22 (74)
T ss_pred eEEEEEeCCCCeEEEeeCC
Confidence 6677778889999996543
No 242
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.78 E-value=1.3e+02 Score=22.13 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 237 EEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 237 e~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
.+.++.+++..| .++++.+....---+.++++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 356788888887 5888888754335588889999998888765554
No 243
>PRK14998 cold shock-like protein CspD; Provisional
Probab=36.68 E-value=33 Score=24.19 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=15.2
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 4 G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred eEEEEEeCCCceEEEecCC
Confidence 6777778889999997654
No 244
>PRK15463 cold shock-like protein CspF; Provisional
Probab=36.50 E-value=33 Score=23.95 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=15.8
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred eEEEEEEeCCCceEEEecCC
Confidence 47777778889999997654
No 245
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=34.62 E-value=49 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.2
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||.-.+
T Consensus 2 ~G~V~~~~~~kgyGFI~~~~ 21 (66)
T PF00313_consen 2 TGTVKWFDDEKGYGFITSDD 21 (66)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEEECCCCceEEEEcc
Confidence 36777778889999999866
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.01 E-value=1.8e+02 Score=21.20 Aligned_cols=56 Identities=4% Similarity=0.127 Sum_probs=40.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhcc-CC-CeeEEEEEecCC-cceEEEEEccHHHHHHHHHH
Q 020297 225 TLFIGNLGESINEEELRGLFSA-QP-GFKQMKVLRQER-HTVCFIEFEDVNSASSVHHN 280 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~-~G-~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~ 280 (328)
+-|+--.+.+.+..+|+..++. || .|.+|..+.... ..-|||++..-..|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3556667888999999988877 55 467776654332 34699999988888776443
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.66 E-value=49 Score=30.32 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccccc
Q 020297 90 GFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 90 aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~~~ 130 (328)
|||+|++..+|..|++.+....- +.+++..|-...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCCccc
Confidence 79999999999999996655443 3457777654443
No 248
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=5 Score=38.04 Aligned_cols=81 Identities=9% Similarity=-0.104 Sum_probs=62.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.+.|+..|+-..+++++.-+|.-||.|..+++.+... +-.+||+-. .++|.-+|+-+.-..+.| -.++++.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~---~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFE---SQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhh---hhhhhhcC
Confidence 4567888898999999999999999999988865433 346777643 567788888888888888 68888888
Q ss_pred cCCCCCCCC
Q 020297 300 KNPFGKRKD 308 (328)
Q Consensus 300 k~~~~~~~~ 308 (328)
+..+.+|..
T Consensus 80 ~~s~~~r~k 88 (572)
T KOG4365|consen 80 PSSSEKRSK 88 (572)
T ss_pred chhhhhhhc
Confidence 777665544
No 249
>PRK11901 hypothetical protein; Reviewed
Probab=33.51 E-value=3.5e+02 Score=25.08 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=33.7
Q ss_pred CCCcCCHHHHHHHHHhCCCCcc-cEEEe-eCCc-ceEEE--EeCCHHHHHHHHHHhcCc
Q 020297 57 LPDDVKERELQNLLRWLPGYEA-SQVNY-KGEK-PMGFA--LFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 57 Lp~~~te~~L~~~f~~~~~~~g-~i~~~-~~~k-g~aFV--~F~~~~~A~~A~~~l~g~ 110 (328)
|-..-.++.|+.+...+. ... .|++- ++.+ .|.+| .|.+.++|..|++.|-..
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 333455888998888773 222 12222 2223 66655 599999999999988643
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=33.48 E-value=38 Score=33.21 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=35.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccccc
Q 020297 85 GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 85 ~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~~~ 130 (328)
.+..|+++.|++.+.+.+|+..++|..+. +..+++..+.....
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k---~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYK---GFILRVQLGATEVG 103 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhh---cchhhhhhcccccc
Confidence 44599999999999999999999999997 67777777655543
No 251
>PRK09890 cold shock protein CspG; Provisional
Probab=33.21 E-value=39 Score=23.52 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.9
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 47777778889999998754
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.09 E-value=48 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=23.9
Q ss_pred EEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 264 CFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 264 aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
|||+|.+..+|+.|++.+....- +.++++.|=
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCC
Confidence 79999999999999997665543 345665543
No 253
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.84 E-value=1.4e+02 Score=19.37 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHhccCC-CeeEEEEEecCCcceEEEE--EccHHHHHHHHHHhCCCee
Q 020297 238 EELRGLFSAQP-GFKQMKVLRQERHTVCFIE--FEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 238 ~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~--F~~~~~A~~Al~~lnG~~i 286 (328)
.+|.++|..+| .|.++........+.+.|. ..+.+.+.++|+. +|+.+
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~~v 64 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGVEL 64 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCceE
Confidence 56778888887 5766665433322444444 4566666566553 45543
No 254
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=32.48 E-value=39 Score=23.47 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.6
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||.=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 37777778889999998543
No 255
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.42 E-value=30 Score=20.77 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhccCC
Q 020297 233 ESINEEELRGLFSAQP 248 (328)
Q Consensus 233 ~~~te~~L~~~F~~~G 248 (328)
.++++++|+++|.+-+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998754
No 256
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=31.49 E-value=45 Score=23.04 Aligned_cols=19 Identities=16% Similarity=0.143 Sum_probs=15.4
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 4 G~Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEG 22 (68)
T ss_pred eEEEEEeCCCCeEEEecCC
Confidence 6677777889999998766
No 257
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=31.39 E-value=1.7e+02 Score=28.66 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 233 ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 233 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.-+.+.||+.-|.-+-.=..+.-+ ..+.+++=+.|.++++|++=++.+..+.-.-+-|...-+.|.+..
T Consensus 88 rliWdqELY~nf~y~q~r~ffhtF-egddc~aGLnF~~E~EA~~F~k~V~~r~~~~nrk~~~~~~~~~r~ 156 (569)
T KOG3671|consen 88 RLIWDQELYQNFEYRQPRTFFHTF-EGDDCQAGLNFASEEEAQKFRKKVQDRICHRNRKESPVLSFEKRN 156 (569)
T ss_pred eeeehHHhhhhceeccCccceeee-ccccceeeecccCHHHHHHHHHHHHHHhhhhhhhcccccchhccc
Confidence 357889999888766533222222 244677888899999999877776554443321223344454433
No 258
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=28.72 E-value=60 Score=21.83 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.1
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6666777779999998766
No 259
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.46 E-value=1.7e+02 Score=19.04 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=40.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccH----HHHHHHHHH
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV----NSASSVHHN 280 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~----~~A~~Al~~ 280 (328)
||.|.||.-.--...|...+...-.|.++.+- ...+..-|.|... +.-.++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd--~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD--LETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE--TTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE--CCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 57788888776678889999999999999884 4557889999744 444555554
No 260
>PF14893 PNMA: PNMA
Probab=28.09 E-value=41 Score=31.25 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhc----cCCCe--eEEEEEecCCcceEEEEEcc
Q 020297 222 PCNTLFIGNLGESINEEELRGLFS----AQPGF--KQMKVLRQERHTVCFIEFED 270 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~----~~G~i--~~v~i~~~~~~g~aFV~F~~ 270 (328)
+.+.|.|.+||.+|+++||.+.+. ..|.. ..-.+.++.+...++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 357799999999999999887654 44432 22222333345567777764
No 261
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.05 E-value=90 Score=29.35 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=48.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCC-CcccEEE-----eeCC-cceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPG-YEASQVN-----YKGE-KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~-~~g~i~~-----~~~~-kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
-..|.|.+||...++++|-+-+..|.. ++..-.. .+.. -+.|+|.|...++...-..-++|+.|.+.-|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 457899999999999998888777622 1111111 1111 2889999999999887777889998854334
No 262
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.59 E-value=68 Score=26.93 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=33.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHH
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKD 105 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~ 105 (328)
.|++|.+ .|++.|..+...-. -.+.-+.++ ..+|-.||+|.+.++|...++
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~-~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS-GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc-ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 6788887 55555555554332 112224442 235999999999999998776
No 263
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.37 E-value=2.3e+02 Score=20.16 Aligned_cols=55 Identities=5% Similarity=0.141 Sum_probs=39.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhcc-CC-CeeEEEEEecCC-cceEEEEEccHHHHHHHHH
Q 020297 225 TLFIGNLGESINEEELRGLFSA-QP-GFKQMKVLRQER-HTVCFIEFEDVNSASSVHH 279 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~-~G-~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~ 279 (328)
+-|+-.++.+.+..+|+..++. || .|..|..+.-.. ..-|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4667778899999999988876 55 466666543332 3469999988777766433
No 264
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.22 E-value=86 Score=29.48 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEEe-cC-----CcceEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLR-QE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~v~i~~-~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
-+.|.|.+||+.+++++|.+-...+-. +....+.. +. ..+.++|.|...++-..=...++|+.+-.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 356889999999999999887777653 22223321 11 166899999999998777788899888764
No 265
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.79 E-value=1.3e+02 Score=22.07 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=26.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e--CCcceEEEEe
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALF 94 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~--~~kg~aFV~F 94 (328)
.-|||+|++..+-|.-...+.+. ...|..+.+ . +..||+|-.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~--~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEW--IGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhh--CCCccEEEEEccCCCCCEEEEEe
Confidence 34999999998886555544443 233444333 2 3458888776
No 266
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.74 E-value=1.1e+02 Score=22.98 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=27.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE-ee--CCcceEEEEeCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-YK--GEKPMGFALFST 96 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~-~~--~~kg~aFV~F~~ 96 (328)
..-|||++++..+-+. |.+.+....+ .|..+. +. +..||+|-.+-+
T Consensus 27 ~~GVyVg~~S~rVRd~-lW~~v~~~~~-~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREM-IWQQVTQLAE-EGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHHhCC-CCcEEEEEcCCCCCCcEEEecCC
Confidence 3459999999888754 4444444432 244433 32 234888887743
No 267
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=26.46 E-value=1.2e+02 Score=22.19 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=28.5
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e--CCcceEEEEeCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFST 96 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~--~~kg~aFV~F~~ 96 (328)
..-|||++++..+-+.- .+.+...+..+|.++.+ . +..||.|-.+-+
T Consensus 25 ~~GVyVg~~s~rVRe~l-W~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERI-WDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHH-HHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 34599999998887554 44444442444665444 3 234888877643
No 268
>PHA01632 hypothetical protein
Probab=25.67 E-value=67 Score=21.27 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEcCCCCcCCHHHHHHHHHhCCC
Q 020297 52 IFITGLPDDVKERELQNLLRWLPG 75 (328)
Q Consensus 52 LfV~nLp~~~te~~L~~~f~~~~~ 75 (328)
|.|..+|..-||++|+.++.+...
T Consensus 19 ilieqvp~kpteeelrkvlpkilk 42 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKILK 42 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999987743
No 269
>PRK10905 cell division protein DamX; Validated
Probab=25.38 E-value=3.6e+02 Score=24.91 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=35.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCc-ceEEE--EeCCHHHHHHHHHHhcC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEK-PMGFA--LFSTAQLAVAAKDALQE 109 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~k-g~aFV--~F~~~~~A~~A~~~l~g 109 (328)
.-+|-|.-+ -.++.|+++..++ ++.+..+..+ +.+ .|-++ .|.+.++|++|++.|-.
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKl-gL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKE-NLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHc-CCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 445555555 4568888888877 3333333222 222 44444 59999999999998853
No 270
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=25.31 E-value=2e+02 Score=18.64 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=26.7
Q ss_pred EEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCCcceEEEEE
Q 020297 226 LFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEF 268 (328)
Q Consensus 226 LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F 268 (328)
|+|..-...-.-.+|.++|+.+| .|.++........+++.+.|
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVL 45 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEE
Confidence 44544444445577889999987 68888876543124554444
No 271
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=24.81 E-value=1.8e+02 Score=21.53 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=37.8
Q ss_pred EeCCCCCCCHHHHHHHhccCCC-eeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 228 IGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 228 V~NL~~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
|..+-+.++...|..-|-.-|. -+-.++.+|-=+.+|.|+|.+.+.+..|.+.|-
T Consensus 17 lYS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 17 LYSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EEecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 3455677788877777766552 233334322227899999999999999988764
No 272
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.45 E-value=52 Score=28.83 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLP 74 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~ 74 (328)
.+.++||+-|||...|++.|.++.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhh
Confidence 3578899999999999999999999993
No 273
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=23.45 E-value=5.7e+02 Score=23.34 Aligned_cols=77 Identities=9% Similarity=0.137 Sum_probs=52.3
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE---eeC------------CcceEEEEeCCHHHHHHHH----H
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN---YKG------------EKPMGFALFSTAQLAVAAK----D 105 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~---~~~------------~kg~aFV~F~~~~~A~~A~----~ 105 (328)
.+-.+|.|...||..+++-.++-.-|-+| |.|-. +.. ..-..++.|-+.+.+-.-. +
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~----~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKF----GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhcc----CceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 34558899999999888888888888888 55522 211 1378999999999887643 3
Q ss_pred HhcCc--eeCCCCCCeEEEEEcccc
Q 020297 106 ALQEM--IFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 106 ~l~g~--~~~~~~gr~l~v~~a~~~ 128 (328)
.|..+ .+. -..|.+.|..-+
T Consensus 87 rLsEfK~~L~---S~~L~lsFV~l~ 108 (309)
T PF10567_consen 87 RLSEFKTKLK---SESLTLSFVSLN 108 (309)
T ss_pred HHHHHHHhcC---CcceeEEEEEEe
Confidence 34433 233 367888886543
No 274
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.40 E-value=1e+02 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.2
Q ss_pred ceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 262 TVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
.+.+|.|.+...|.+|-+.|....|..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999999887665543
No 275
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.62 E-value=1.2e+02 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhC
Q 020297 50 RTIFITGLPDDVKERELQNLLRWL 73 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~ 73 (328)
....|+||||.++..=|..+++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhcc
Confidence 457899999999999999999876
No 276
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.17 E-value=1.1e+02 Score=25.70 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCCCCHHHHH---HHhccCCCeeEEEEEecCC-----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 223 CNTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~---~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
.+++|.. .|++.|. .+-+ |.++.|...+... +|--||+|.+.++|...++. ++..... ..|
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e---~el 179 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAE---TEL 179 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccc---hHH
Confidence 4667776 4454444 4333 7888887754333 68899999999999987764 4444444 455
Q ss_pred EEEe
Q 020297 295 RIQY 298 (328)
Q Consensus 295 ~V~~ 298 (328)
..+|
T Consensus 180 ~r~~ 183 (205)
T KOG4213|consen 180 KRSG 183 (205)
T ss_pred HHHH
Confidence 5555
No 277
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.14 E-value=1.5e+02 Score=21.23 Aligned_cols=29 Identities=7% Similarity=-0.114 Sum_probs=23.7
Q ss_pred eCCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 84 KGEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 84 ~~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
...|||-||+=.+..+...|++.+.+...
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 46789999999999999999887766554
No 278
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=90 Score=30.75 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=50.1
Q ss_pred EeCCCCCCCHHHHHH-HhccCCCeeEE-EEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCC
Q 020297 228 IGNLGESINEEELRG-LFSAQPGFKQM-KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 228 V~NL~~~~te~~L~~-~F~~~G~i~~v-~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~ 305 (328)
+.+++.++-...+.. ++...+...+. ++ .+...++++.|.+...+.+|++.++|....+ ..+++..++...+.
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~--~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~---~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKL--PKMPKYAYVTFETPSDAGKAINLVDGLLYKG---FILRVQLGATEVGS 104 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCC--CCCCCceEEEEeccchhhhHHHHHhhhhhhc---chhhhhhccccccc
Confidence 344555544444433 33333333332 22 2336799999999999999999999999998 78888887766554
Q ss_pred CCC
Q 020297 306 RKD 308 (328)
Q Consensus 306 ~~~ 308 (328)
...
T Consensus 105 ~~~ 107 (534)
T KOG2187|consen 105 LRR 107 (534)
T ss_pred ccc
Confidence 444
Done!