Query 020297
Match_columns 328
No_of_seqs 150 out of 1953
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 5E-34 1.7E-38 257.5 27.6 241 46-300 6-281 (282)
2 4f02_A Polyadenylate-binding p 100.0 1.2E-34 4E-39 251.4 18.9 159 47-302 13-181 (213)
3 2adc_A Polypyrimidine tract-bi 100.0 1.9E-33 6.5E-38 246.5 22.8 191 47-302 32-228 (229)
4 3md3_A Nuclear and cytoplasmic 100.0 5.2E-33 1.8E-37 230.4 19.4 154 50-300 1-165 (166)
5 2g4b_A Splicing factor U2AF 65 100.0 6.6E-33 2.2E-37 231.6 17.8 156 48-299 3-171 (172)
6 2yh0_A Splicing factor U2AF 65 100.0 1.8E-32 6.2E-37 234.1 20.4 179 48-302 3-194 (198)
7 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-32 1.1E-36 226.4 20.9 155 48-299 2-168 (168)
8 3tyt_A Heterogeneous nuclear r 100.0 1.5E-32 5.2E-37 236.6 19.2 194 47-299 2-204 (205)
9 3nmr_A Cugbp ELAV-like family 100.0 2.9E-32 1E-36 228.0 19.8 161 48-300 2-175 (175)
10 1fxl_A Paraneoplastic encephal 100.0 8E-32 2.7E-36 223.4 20.7 154 49-299 2-167 (167)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-32 4.7E-37 230.5 16.0 162 46-302 10-174 (175)
12 1qm9_A Polypyrimidine tract-bi 100.0 6.1E-32 2.1E-36 231.3 20.3 189 49-302 3-197 (198)
13 1l3k_A Heterogeneous nuclear r 100.0 7.6E-32 2.6E-36 229.8 19.5 165 47-306 11-187 (196)
14 2qfj_A FBP-interacting repress 100.0 9.5E-32 3.2E-36 232.7 20.0 167 48-302 27-205 (216)
15 2cjk_A Nuclear polyadenylated 100.0 9.3E-32 3.2E-36 223.5 14.3 153 48-302 2-166 (167)
16 3sde_A Paraspeckle component 1 100.0 1.1E-29 3.7E-34 226.9 20.0 154 47-302 20-179 (261)
17 3smz_A Protein raver-1, ribonu 100.0 1.6E-29 5.5E-34 228.2 20.5 160 48-303 94-265 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 1E-29 3.6E-34 230.3 18.2 162 48-302 116-291 (292)
19 3smz_A Protein raver-1, ribonu 100.0 2.3E-29 7.9E-34 227.2 20.3 149 48-302 21-175 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 8.5E-29 2.9E-33 224.3 17.4 150 46-302 38-197 (292)
21 2i2y_A Fusion protein consists 99.9 7.9E-24 2.7E-28 173.1 12.9 137 85-302 11-148 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 6.8E-23 2.3E-27 168.9 15.5 78 222-302 69-150 (158)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.8E-21 9.5E-26 146.6 10.9 77 222-301 18-98 (99)
24 4f25_A Polyadenylate-binding p 99.8 3.9E-21 1.3E-25 150.0 9.2 73 49-128 5-83 (115)
25 3r27_A HnRNP L, heterogeneous 99.8 1.8E-20 6.2E-25 141.2 10.6 79 219-302 17-97 (100)
26 2cq1_A PTB-like protein L; RRM 99.8 8.5E-20 2.9E-24 138.7 14.1 83 220-307 12-96 (101)
27 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.8E-20 2.7E-24 139.5 13.8 85 221-308 13-99 (103)
28 4f25_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 145.1 11.2 78 223-303 5-84 (115)
29 1sjq_A Polypyrimidine tract-bi 99.8 1.9E-20 6.4E-25 142.5 9.4 81 221-306 14-96 (105)
30 1wex_A Hypothetical protein (r 99.8 1.1E-19 3.8E-24 138.9 13.2 82 220-306 12-95 (104)
31 3s8s_A Histone-lysine N-methyl 99.8 8.6E-20 2.9E-24 141.1 11.7 79 221-302 4-86 (110)
32 1x4d_A Matrin 3; structural ge 99.8 7.7E-20 2.6E-24 138.9 11.2 76 222-302 14-92 (102)
33 2cq3_A RNA-binding protein 9; 99.8 4.1E-19 1.4E-23 135.5 14.9 83 220-305 12-96 (103)
34 2dnz_A Probable RNA-binding pr 99.8 2.6E-19 8.9E-24 134.4 13.2 80 222-304 4-87 (95)
35 2cpz_A CUG triplet repeat RNA- 99.8 3.1E-19 1.1E-23 139.0 13.8 82 219-303 21-106 (115)
36 1x4a_A Splicing factor, argini 99.8 4.9E-19 1.7E-23 136.5 14.8 81 221-304 20-101 (109)
37 2d9p_A Polyadenylate-binding p 99.8 3.2E-19 1.1E-23 136.1 13.5 83 221-306 13-97 (103)
38 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-19 5.3E-24 140.8 11.9 83 220-307 28-112 (119)
39 2dgo_A Cytotoxic granule-assoc 99.8 5.1E-19 1.7E-23 137.7 14.9 82 221-305 13-98 (115)
40 2lea_A Serine/arginine-rich sp 99.8 2.4E-20 8.3E-25 149.6 7.5 78 223-303 47-128 (135)
41 1x5u_A Splicing factor 3B subu 99.8 4E-19 1.4E-23 136.0 13.4 82 221-305 13-98 (105)
42 2dnq_A RNA-binding protein 4B; 99.8 3E-19 1E-23 132.8 12.2 77 221-304 6-82 (90)
43 2lxi_A RNA-binding protein 10; 99.8 2.4E-20 8.3E-25 139.2 6.2 78 223-303 1-84 (91)
44 2cpf_A RNA binding motif prote 99.8 2.8E-19 9.6E-24 135.1 12.0 81 222-305 4-91 (98)
45 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-19 8.1E-24 136.5 11.4 84 222-308 11-98 (102)
46 2dgs_A DAZ-associated protein 99.8 5.9E-19 2E-23 133.6 13.2 81 221-305 8-92 (99)
47 2do0_A HnRNP M, heterogeneous 99.8 1.6E-18 5.3E-23 134.7 15.9 79 221-302 13-94 (114)
48 2cph_A RNA binding motif prote 99.8 6.3E-19 2.1E-23 135.3 13.4 83 220-305 12-100 (107)
49 2do4_A Squamous cell carcinoma 99.8 6.8E-19 2.3E-23 133.5 13.3 79 221-302 15-96 (100)
50 2cpj_A Non-POU domain-containi 99.8 7.3E-19 2.5E-23 133.1 13.4 78 220-302 12-89 (99)
51 1why_A Hypothetical protein ri 99.8 6.3E-19 2.2E-23 133.0 12.8 77 221-302 15-93 (97)
52 2dnh_A Bruno-like 5, RNA bindi 99.8 9.1E-19 3.1E-23 134.0 13.9 85 220-304 12-99 (105)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3E-19 1E-23 131.2 10.7 76 222-300 6-85 (85)
54 2lkz_A RNA-binding protein 5; 99.8 8.3E-20 2.8E-24 137.2 7.8 76 223-301 9-94 (95)
55 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-18 5.5E-23 139.5 16.0 85 218-305 37-125 (139)
56 2khc_A Testis-specific RNP-typ 99.8 7.5E-19 2.6E-23 137.4 13.4 79 219-300 36-118 (118)
57 2e5h_A Zinc finger CCHC-type a 99.8 5.7E-19 1.9E-23 132.3 12.1 77 221-300 14-94 (94)
58 2cq0_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 134.1 13.0 81 220-303 12-96 (103)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-19 9.6E-24 132.0 10.3 78 222-302 5-86 (87)
60 2dgv_A HnRNP M, heterogeneous 99.8 4.2E-19 1.5E-23 132.5 11.3 80 222-304 7-88 (92)
61 1x5t_A Splicing factor 3B subu 99.8 3.4E-19 1.2E-23 134.1 10.6 81 222-305 4-89 (96)
62 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.7E-23 135.0 11.6 79 221-302 11-93 (103)
63 2dgx_A KIAA0430 protein; RRM d 99.8 4E-19 1.4E-23 133.9 10.8 78 222-302 8-90 (96)
64 1whw_A Hypothetical protein ri 99.8 7.2E-19 2.5E-23 133.1 12.2 79 222-303 7-89 (99)
65 1x4g_A Nucleolysin TIAR; struc 99.8 5.1E-19 1.7E-23 136.5 11.5 80 221-305 23-102 (109)
66 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.4E-19 1.5E-23 135.0 11.0 81 222-305 11-95 (102)
67 2cqc_A Arginine/serine-rich sp 99.8 5.8E-19 2E-23 132.5 11.5 79 220-301 12-94 (95)
68 2x1f_A MRNA 3'-END-processing 99.8 4.2E-19 1.4E-23 133.7 10.6 78 222-302 1-82 (96)
69 4a8x_A RNA-binding protein wit 99.8 5.8E-19 2E-23 130.5 11.2 77 223-302 4-85 (88)
70 2dgp_A Bruno-like 4, RNA bindi 99.8 5.6E-19 1.9E-23 135.4 11.3 81 221-304 11-98 (106)
71 3md1_A Nuclear and cytoplasmic 99.8 5.2E-19 1.8E-23 129.3 10.6 76 224-302 2-81 (83)
72 2e5j_A Methenyltetrahydrofolat 99.8 8.6E-19 2.9E-23 132.3 12.1 78 221-302 17-94 (97)
73 2a3j_A U1 small nuclear ribonu 99.8 4.4E-19 1.5E-23 140.4 10.6 79 221-302 27-110 (127)
74 1x4h_A RNA-binding protein 28; 99.8 1.6E-18 5.5E-23 133.9 13.5 80 221-303 13-102 (111)
75 2wbr_A GW182, gawky, LD47780P; 99.8 4.5E-19 1.5E-23 129.2 9.7 73 223-300 7-79 (89)
76 2cpd_A Apobec-1 stimulating pr 99.8 2.1E-18 7.1E-23 130.6 13.6 78 220-304 12-91 (99)
77 2dgu_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 132.2 13.0 81 221-308 9-89 (103)
78 2err_A Ataxin-2-binding protei 99.8 5.6E-19 1.9E-23 136.3 10.5 80 220-302 26-107 (109)
79 2la6_A RNA-binding protein FUS 99.8 9E-19 3.1E-23 132.6 11.5 77 221-300 11-99 (99)
80 2jrs_A RNA-binding protein 39; 99.8 7.7E-19 2.6E-23 135.3 11.2 81 219-302 22-106 (108)
81 2fy1_A RNA-binding motif prote 99.8 1.4E-18 4.7E-23 135.6 12.7 81 222-305 6-89 (116)
82 2ytc_A PRE-mRNA-splicing facto 99.8 7.5E-19 2.6E-23 129.1 10.5 75 221-300 10-85 (85)
83 2dgt_A RNA-binding protein 30; 99.8 1.3E-18 4.6E-23 129.8 12.0 76 222-304 9-84 (92)
84 2dnp_A RNA-binding protein 14; 99.8 1.1E-18 3.7E-23 129.8 11.4 77 221-304 7-83 (90)
85 1x4f_A Matrin 3; structural ge 99.8 1.4E-18 4.8E-23 133.9 12.1 78 220-302 22-102 (112)
86 2jvo_A Nucleolar protein 3; nu 99.8 7E-19 2.4E-23 135.5 10.4 77 219-302 27-103 (108)
87 2cqd_A RNA-binding region cont 99.8 3.8E-18 1.3E-22 133.0 14.6 84 220-307 14-101 (116)
88 2jvr_A Nucleolar protein 3; RN 99.8 3.4E-19 1.2E-23 137.6 8.3 78 222-302 27-105 (111)
89 2la4_A Nuclear and cytoplasmic 99.8 5.5E-19 1.9E-23 134.3 9.3 76 222-302 26-101 (101)
90 2m2b_A RNA-binding protein 10; 99.8 1.2E-18 4.2E-23 138.9 11.7 79 220-302 20-108 (131)
91 2dng_A Eukaryotic translation 99.8 2.8E-18 9.5E-23 130.9 13.2 78 222-304 14-95 (103)
92 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6.1E-23 134.2 12.3 81 221-304 13-105 (113)
93 2xnq_A Nuclear polyadenylated 99.8 1.4E-18 4.9E-23 131.1 11.1 76 220-302 19-95 (97)
94 1wi8_A EIF-4B, eukaryotic tran 99.8 2.7E-18 9.2E-23 131.2 12.7 79 222-305 14-97 (104)
95 2div_A TRNA selenocysteine ass 99.8 1.1E-18 3.9E-23 132.0 10.4 78 222-302 8-94 (99)
96 2ywk_A Putative RNA-binding pr 99.8 1.1E-18 3.6E-23 131.1 10.1 77 222-301 15-94 (95)
97 2cpi_A CCR4-NOT transcription 99.8 1.6E-18 5.5E-23 134.2 11.4 79 222-303 14-102 (111)
98 2dhg_A TRNA selenocysteine ass 99.8 2E-18 7E-23 131.8 11.4 81 222-305 8-93 (104)
99 1wf1_A RNA-binding protein RAL 99.8 2.2E-18 7.6E-23 133.1 11.5 79 222-307 26-105 (110)
100 2kvi_A Nuclear polyadenylated 99.8 1.3E-18 4.5E-23 131.0 9.8 78 221-305 8-86 (96)
101 2cqp_A RNA-binding protein 12; 99.8 1.3E-18 4.3E-23 131.5 9.6 79 221-302 13-95 (98)
102 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 5E-23 133.1 10.0 78 222-302 22-103 (106)
103 3p5t_L Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 132.5 6.2 76 224-302 2-83 (90)
104 2kxn_B Transformer-2 protein h 99.8 1.7E-18 5.9E-23 137.6 10.5 81 219-302 42-126 (129)
105 2cpx_A Hypothetical protein FL 99.8 4.5E-18 1.5E-22 132.3 12.7 83 220-305 22-108 (115)
106 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-18 5.3E-23 133.9 10.0 78 222-302 25-106 (110)
107 1x5p_A Negative elongation fac 99.8 8.9E-18 3E-22 126.6 13.9 77 221-304 13-89 (97)
108 2hvz_A Splicing factor, argini 99.8 1.6E-18 5.6E-23 131.7 9.9 76 224-303 1-76 (101)
109 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-18 5.9E-23 143.6 10.7 82 222-306 71-156 (165)
110 1sjr_A Polypyrimidine tract-bi 99.8 1.7E-18 5.9E-23 141.7 10.1 80 223-303 46-125 (164)
111 3zzy_A Polypyrimidine tract-bi 99.8 2.3E-18 7.7E-23 135.9 10.4 79 223-303 28-107 (130)
112 2fc9_A NCL protein; structure 99.8 3E-18 1E-22 130.2 10.7 79 221-302 13-91 (101)
113 3ulh_A THO complex subunit 4; 99.8 3.7E-18 1.3E-22 131.1 11.3 77 221-300 27-106 (107)
114 1nu4_A U1A RNA binding domain; 99.8 1.4E-18 4.7E-23 131.0 8.5 79 221-302 6-89 (97)
115 1whx_A Hypothetical protein ri 99.8 2.3E-18 7.8E-23 133.3 9.9 76 223-303 10-85 (111)
116 2cqh_A IGF-II mRNA-binding pro 99.8 3.1E-18 1E-22 128.1 10.3 76 222-303 7-84 (93)
117 1x5o_A RNA binding motif, sing 99.8 1.5E-17 5E-22 129.2 14.4 82 221-302 23-112 (114)
118 2dh8_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 130.9 10.4 82 220-305 13-98 (105)
119 2dis_A Unnamed protein product 99.8 3.2E-18 1.1E-22 131.8 10.4 92 222-316 7-106 (109)
120 4fxv_A ELAV-like protein 1; RN 99.8 2.7E-18 9.2E-23 130.1 9.7 73 48-127 18-98 (99)
121 3ex7_B RNA-binding protein 8A; 99.8 3.1E-18 1E-22 135.5 10.3 82 222-306 21-106 (126)
122 3lqv_A PRE-mRNA branch site pr 99.8 4.8E-18 1.7E-22 132.2 11.2 78 222-302 7-85 (115)
123 3ucg_A Polyadenylate-binding p 99.8 4.2E-18 1.4E-22 126.1 10.1 76 223-302 6-85 (89)
124 1x4e_A RNA binding motif, sing 99.8 7.7E-19 2.6E-23 129.1 5.7 76 222-300 4-83 (85)
125 2cq4_A RNA binding motif prote 99.8 4.1E-18 1.4E-22 132.4 10.1 77 222-302 24-104 (114)
126 1s79_A Lupus LA protein; RRM, 99.7 3E-18 1E-22 130.7 8.9 76 222-301 10-88 (103)
127 3r27_A HnRNP L, heterogeneous 99.7 5.7E-18 1.9E-22 127.6 10.2 76 47-129 19-98 (100)
128 2diu_A KIAA0430 protein; struc 99.7 5.7E-18 2E-22 124.5 9.9 72 222-302 7-84 (96)
129 2rs2_A Musashi-1, RNA-binding 99.7 6E-18 2.1E-22 130.5 10.5 84 217-304 19-106 (109)
130 2e44_A Insulin-like growth fac 99.7 8E-18 2.8E-22 126.5 11.0 78 222-302 14-92 (96)
131 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.6E-22 137.4 12.6 83 220-305 36-122 (156)
132 2e5i_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 130.7 12.6 78 222-302 22-102 (124)
133 1p1t_A Cleavage stimulation fa 99.7 4E-18 1.4E-22 130.1 9.2 78 223-303 8-89 (104)
134 3n9u_C Cleavage and polyadenyl 99.7 5.1E-18 1.8E-22 139.3 10.4 78 222-302 54-137 (156)
135 1x4c_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 126.5 13.8 79 222-303 14-94 (108)
136 2nlw_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 129.9 9.7 78 222-302 14-100 (105)
137 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.6E-18 5.5E-23 131.5 6.6 76 222-302 18-98 (100)
138 2fc8_A NCL protein; structure 99.7 1.1E-17 3.9E-22 127.1 11.4 78 221-304 13-94 (102)
139 2cqg_A TDP-43, TAR DNA-binding 99.7 3E-17 1E-21 125.1 13.6 79 221-304 13-95 (103)
140 2kt5_A RNA and export factor-b 99.7 5E-17 1.7E-21 128.2 15.3 79 221-302 33-114 (124)
141 3ns6_A Eukaryotic translation 99.7 2.7E-18 9.2E-23 130.3 7.6 78 223-302 6-93 (100)
142 2ek1_A RNA-binding protein 12; 99.7 2.4E-18 8.2E-23 129.1 7.2 77 222-301 14-94 (95)
143 2cq2_A Hypothetical protein LO 99.7 5.6E-18 1.9E-22 130.7 9.3 76 222-302 24-106 (114)
144 3s7r_A Heterogeneous nuclear r 99.7 1.4E-17 4.8E-22 122.9 10.9 75 221-299 9-87 (87)
145 2dgw_A Probable RNA-binding pr 99.7 2E-17 6.7E-22 123.2 11.7 76 222-302 9-87 (91)
146 1fjc_A Nucleolin RBD2, protein 99.7 5.5E-18 1.9E-22 127.4 8.5 80 221-304 14-93 (96)
147 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 130.2 10.5 80 222-305 26-109 (116)
148 1sjq_A Polypyrimidine tract-bi 99.7 7.4E-18 2.5E-22 128.2 8.9 76 48-130 15-94 (105)
149 2cq1_A PTB-like protein L; RRM 99.7 2.3E-17 7.9E-22 125.2 11.5 79 44-129 10-92 (101)
150 2diu_A KIAA0430 protein; struc 99.7 1.8E-17 6.1E-22 121.8 10.5 77 47-132 6-88 (96)
151 2xnq_A Nuclear polyadenylated 99.7 1.6E-17 5.4E-22 125.3 10.5 75 47-128 20-95 (97)
152 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 143.2 10.8 78 221-302 2-80 (205)
153 1wex_A Hypothetical protein (r 99.7 2.5E-17 8.6E-22 125.7 11.2 77 46-129 12-92 (104)
154 1wez_A HnRNP H', FTP-3, hetero 99.7 3.6E-17 1.2E-21 124.5 11.9 79 222-305 14-95 (102)
155 2krb_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 124.0 6.4 71 224-297 2-81 (81)
156 2cpd_A Apobec-1 stimulating pr 99.7 4.7E-17 1.6E-21 123.1 12.5 80 46-130 12-91 (99)
157 1wg1_A KIAA1579 protein, homol 99.7 1.3E-17 4.6E-22 123.4 8.9 74 223-302 5-78 (88)
158 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 9E-22 132.3 11.4 76 221-299 61-140 (140)
159 3lqv_A PRE-mRNA branch site pr 99.7 9.1E-18 3.1E-22 130.6 8.3 75 47-128 6-85 (115)
160 2jwn_A Embryonic polyadenylate 99.7 2.3E-17 8E-22 130.0 10.7 76 223-302 36-115 (124)
161 2mss_A Protein (musashi1); RNA 99.7 6.5E-18 2.2E-22 121.0 6.8 71 225-299 1-75 (75)
162 1x4d_A Matrin 3; structural ge 99.7 1.6E-17 5.5E-22 126.1 9.1 78 46-130 12-94 (102)
163 1fj7_A Nucleolin RBD1, protein 99.7 4E-18 1.4E-22 129.5 5.7 77 222-303 16-96 (101)
164 2khc_A Testis-specific RNP-typ 99.7 6.3E-17 2.2E-21 126.4 12.4 75 45-126 36-118 (118)
165 2ki2_A SS-DNA binding protein 99.7 2.9E-18 1E-22 127.4 4.4 75 224-302 2-80 (90)
166 2dgt_A RNA-binding protein 30; 99.7 4.5E-17 1.5E-21 121.5 10.7 78 46-130 7-84 (92)
167 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.4E-17 3.2E-21 122.3 12.6 78 46-130 12-95 (103)
168 2hvz_A Splicing factor, argini 99.7 2.6E-17 8.8E-22 125.0 9.4 73 50-129 1-76 (101)
169 2jvo_A Nucleolar protein 3; nu 99.7 1.5E-17 5.2E-22 128.0 8.2 76 47-129 29-104 (108)
170 2dgu_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 122.9 11.8 77 47-130 9-85 (103)
171 3s8s_A Histone-lysine N-methyl 99.7 2.3E-17 7.7E-22 127.4 8.9 76 47-129 4-87 (110)
172 2dnq_A RNA-binding protein 4B; 99.7 4.3E-17 1.5E-21 121.1 10.0 77 47-130 6-82 (90)
173 2ad9_A Polypyrimidine tract-bi 99.7 4.8E-17 1.7E-21 126.7 10.5 78 46-130 28-109 (119)
174 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.7E-22 119.9 6.9 72 224-299 1-76 (77)
175 1x4a_A Splicing factor, argini 99.7 1.5E-16 5.1E-21 122.5 13.1 78 46-130 19-101 (109)
176 2e5g_A U6 snRNA-specific termi 99.7 7.9E-17 2.7E-21 120.7 10.9 75 223-302 8-82 (94)
177 2wbr_A GW182, gawky, LD47780P; 99.7 3.6E-17 1.2E-21 119.1 8.6 71 49-126 7-79 (89)
178 2db1_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 127.6 9.6 77 222-302 16-98 (118)
179 2e5j_A Methenyltetrahydrofolat 99.7 2E-16 6.9E-21 119.1 13.0 78 47-128 17-94 (97)
180 2err_A Ataxin-2-binding protei 99.7 2.7E-17 9.3E-22 126.8 8.4 76 46-128 26-107 (109)
181 3beg_B Splicing factor, argini 99.7 4.1E-17 1.4E-21 127.0 9.3 74 223-302 16-94 (115)
182 2cpy_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 126.5 9.5 78 221-302 13-94 (114)
183 2lcw_A RNA-binding protein FUS 99.5 1E-18 3.4E-23 136.3 0.0 82 221-305 5-98 (116)
184 3n9u_C Cleavage and polyadenyl 99.7 2.9E-17 9.8E-22 134.8 8.7 76 47-129 53-138 (156)
185 1x4f_A Matrin 3; structural ge 99.7 5.5E-17 1.9E-21 125.0 9.6 79 46-131 22-105 (112)
186 3d2w_A TAR DNA-binding protein 99.7 5.3E-17 1.8E-21 120.4 9.2 73 222-302 10-84 (89)
187 3egn_A RNA-binding protein 40; 99.7 4.5E-17 1.6E-21 131.7 9.6 80 220-302 42-130 (143)
188 2ytc_A PRE-mRNA-splicing facto 99.7 7.7E-17 2.6E-21 118.2 9.8 73 47-126 10-85 (85)
189 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-16 3.4E-21 117.6 10.4 73 47-126 5-85 (85)
190 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-16 5.1E-21 119.0 11.5 73 47-126 14-94 (94)
191 2cpj_A Non-POU domain-containi 99.7 8.3E-17 2.8E-21 121.7 10.2 77 47-130 13-91 (99)
192 2cq3_A RNA-binding protein 9; 99.7 2.1E-16 7.3E-21 120.3 12.4 78 46-130 12-95 (103)
193 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 130.7 11.6 79 47-130 44-126 (164)
194 2bz2_A Negative elongation fac 99.7 7.5E-17 2.6E-21 126.6 10.0 75 221-302 37-111 (121)
195 1wg5_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 120.7 12.3 77 222-302 14-94 (104)
196 1wel_A RNA-binding protein 12; 99.7 5.6E-17 1.9E-21 127.9 9.3 77 222-302 24-104 (124)
197 2cqc_A Arginine/serine-rich sp 99.7 1.3E-16 4.6E-21 119.4 10.9 75 46-127 12-94 (95)
198 2la4_A Nuclear and cytoplasmic 99.7 1.3E-17 4.5E-22 126.6 5.4 75 47-128 25-101 (101)
199 1x5u_A Splicing factor 3B subu 99.7 1.8E-16 6.1E-21 121.1 11.7 78 46-130 12-97 (105)
200 2a3j_A U1 small nuclear ribonu 99.7 8.4E-17 2.9E-21 127.2 10.2 77 47-130 27-112 (127)
201 2dnp_A RNA-binding protein 14; 99.7 1.1E-16 3.8E-21 118.8 10.3 75 47-128 7-81 (90)
202 1u6f_A Tcubp1, RNA-binding pro 99.7 5.8E-16 2E-20 124.4 15.1 79 45-130 38-124 (139)
203 1whw_A Hypothetical protein ri 99.7 3.1E-16 1.1E-20 118.5 12.5 77 47-130 6-90 (99)
204 2d9p_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 121.7 10.1 81 43-130 9-95 (103)
205 2lxi_A RNA-binding protein 10; 99.7 4.3E-17 1.5E-21 121.5 7.4 74 49-129 1-84 (91)
206 2cph_A RNA binding motif prote 99.7 2.8E-16 9.6E-21 120.4 12.2 78 46-130 12-99 (107)
207 2lkz_A RNA-binding protein 5; 99.7 8.1E-17 2.8E-21 120.8 8.9 79 46-127 6-94 (95)
208 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-16 5.6E-21 123.4 11.0 77 47-130 23-107 (115)
209 3q2s_C Cleavage and polyadenyl 99.7 5.7E-17 1.9E-21 141.4 9.2 77 222-301 67-149 (229)
210 2fc9_A NCL protein; structure 99.7 2.1E-16 7.1E-21 119.9 10.9 77 46-129 12-92 (101)
211 2hgl_A HNRPF protein, heteroge 99.7 6.6E-17 2.2E-21 129.3 8.5 76 222-301 43-124 (136)
212 1wf0_A TDP-43, TAR DNA-binding 99.7 5.5E-17 1.9E-21 120.0 7.4 75 222-304 4-80 (88)
213 2dgx_A KIAA0430 protein; RRM d 99.7 1.8E-16 6.1E-21 119.2 10.3 75 47-128 7-90 (96)
214 2kvi_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 122.5 6.9 78 46-130 7-85 (96)
215 2dnz_A Probable RNA-binding pr 99.7 2.3E-16 7.8E-21 118.2 10.7 76 47-129 3-86 (95)
216 2kxn_B Transformer-2 protein h 99.7 1E-16 3.6E-21 127.3 9.3 77 45-128 42-126 (129)
217 2x1f_A MRNA 3'-END-processing 99.7 2.1E-16 7.3E-21 118.7 10.5 76 48-130 1-84 (96)
218 2dgo_A Cytotoxic granule-assoc 99.7 2.7E-16 9.4E-21 122.1 11.4 78 46-130 12-97 (115)
219 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-16 4.3E-21 117.6 9.0 75 47-128 4-86 (87)
220 2do4_A Squamous cell carcinoma 99.7 3.5E-16 1.2E-20 118.4 11.7 76 46-128 14-96 (100)
221 1x4g_A Nucleolysin TIAR; struc 99.7 2.5E-16 8.6E-21 121.2 10.8 77 47-130 23-101 (109)
222 2dgs_A DAZ-associated protein 99.7 3.6E-16 1.2E-20 118.2 11.4 77 46-130 7-91 (99)
223 2fc8_A NCL protein; structure 99.7 2.5E-16 8.6E-21 119.6 10.6 78 46-130 12-94 (102)
224 2dnm_A SRP46 splicing factor; 99.7 2.1E-16 7.2E-21 120.3 10.2 77 46-129 10-94 (103)
225 2jrs_A RNA-binding protein 39; 99.7 1.9E-16 6.5E-21 121.8 9.9 76 47-129 24-107 (108)
226 1x5s_A Cold-inducible RNA-bind 99.7 2E-16 6.7E-21 120.2 9.8 78 46-130 9-94 (102)
227 1x4c_A Splicing factor, argini 99.7 3.8E-16 1.3E-20 120.0 11.5 76 47-129 13-94 (108)
228 4f02_A Polyadenylate-binding p 99.7 2E-16 6.7E-21 136.5 11.0 78 222-302 14-95 (213)
229 1x4h_A RNA-binding protein 28; 99.7 6.6E-16 2.3E-20 119.1 12.8 78 46-130 12-103 (111)
230 1whx_A Hypothetical protein ri 99.7 1.2E-16 4E-21 123.6 8.5 75 48-129 9-85 (111)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.3E-16 7.9E-21 119.8 10.1 77 47-130 10-94 (102)
232 2f3j_A RNA and export factor b 99.7 1.7E-16 5.9E-21 132.9 10.1 79 221-302 86-167 (177)
233 2dnh_A Bruno-like 5, RNA bindi 99.7 4.2E-16 1.4E-20 119.0 11.4 80 47-130 13-99 (105)
234 1why_A Hypothetical protein ri 99.7 6.1E-16 2.1E-20 116.4 12.0 78 46-128 14-93 (97)
235 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5.1E-21 122.7 8.6 74 48-128 27-105 (111)
236 3md1_A Nuclear and cytoplasmic 99.7 2.7E-16 9.1E-21 114.7 9.4 73 49-128 1-81 (83)
237 2cq0_A Eukaryotic translation 99.7 2.6E-16 8.8E-21 119.8 9.6 77 46-129 12-96 (103)
238 2ywk_A Putative RNA-binding pr 99.7 2E-16 6.9E-21 118.5 8.8 75 46-127 13-94 (95)
239 4a8x_A RNA-binding protein wit 99.7 4.5E-16 1.5E-20 114.8 10.5 74 48-128 3-85 (88)
240 2lmi_A GRSF-1, G-rich sequence 99.7 7.1E-17 2.4E-21 124.0 6.4 77 222-302 10-92 (107)
241 2dgp_A Bruno-like 4, RNA bindi 99.7 3.9E-16 1.3E-20 119.4 10.4 81 46-130 10-98 (106)
242 1x5t_A Splicing factor 3B subu 99.7 2.5E-16 8.7E-21 118.2 9.1 80 47-129 3-87 (96)
243 1nu4_A U1A RNA binding domain; 99.7 4.7E-16 1.6E-20 116.9 10.6 78 46-130 5-91 (97)
244 2dnn_A RNA-binding protein 12; 99.7 2.3E-16 8E-21 121.3 9.1 74 223-301 16-92 (109)
245 2cqh_A IGF-II mRNA-binding pro 99.7 3.2E-16 1.1E-20 117.0 9.6 77 47-129 6-84 (93)
246 3u1l_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.8E-21 138.8 8.7 76 222-302 133-229 (240)
247 1iqt_A AUF1, heterogeneous nuc 99.7 4.9E-17 1.7E-21 116.4 4.8 71 225-299 1-75 (75)
248 2cpf_A RNA binding motif prote 99.7 2.9E-16 1E-20 118.3 9.3 77 47-130 3-90 (98)
249 2xs2_A Deleted in azoospermia- 99.7 9.3E-17 3.2E-21 122.1 6.4 76 222-302 8-86 (102)
250 2dgv_A HnRNP M, heterogeneous 99.7 3.2E-16 1.1E-20 116.7 9.2 76 47-129 6-87 (92)
251 2dit_A HIV TAT specific factor 99.7 1.4E-15 4.8E-20 117.7 13.0 79 221-302 13-102 (112)
252 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.8E-21 115.9 8.3 71 222-298 5-86 (87)
253 2cqd_A RNA-binding region cont 99.7 1.3E-15 4.5E-20 118.5 12.7 77 45-129 13-97 (116)
254 1x5p_A Negative elongation fac 99.7 1.2E-15 4.3E-20 114.8 12.1 76 46-130 12-89 (97)
255 2la6_A RNA-binding protein FUS 99.7 4.4E-16 1.5E-20 117.7 9.6 77 47-126 11-99 (99)
256 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-16 2.2E-20 127.5 11.3 78 222-302 2-83 (168)
257 2cqp_A RNA-binding protein 12; 99.7 1E-15 3.5E-20 115.4 11.5 79 46-127 12-94 (98)
258 1wf1_A RNA-binding protein RAL 99.7 6.7E-16 2.3E-20 119.0 10.6 75 47-128 25-100 (110)
259 1p27_B RNA-binding protein 8A; 99.6 5.1E-16 1.7E-20 118.8 9.7 75 47-128 21-103 (106)
260 2rs2_A Musashi-1, RNA-binding 99.6 5.1E-16 1.7E-20 119.6 9.7 76 46-129 22-105 (109)
261 3zzy_A Polypyrimidine tract-bi 99.6 4.8E-16 1.6E-20 122.6 9.6 76 48-130 27-108 (130)
262 1fxl_A Paraneoplastic encephal 99.6 7.2E-16 2.5E-20 126.9 11.2 77 223-302 2-82 (167)
263 2cq2_A Hypothetical protein LO 99.6 3.7E-16 1.3E-20 120.5 8.7 79 46-128 22-106 (114)
264 2cpe_A RNA-binding protein EWS 99.6 7.8E-16 2.7E-20 119.2 10.5 78 46-130 12-105 (113)
265 2cq4_A RNA binding motif prote 99.6 4.1E-16 1.4E-20 121.0 8.9 75 47-129 23-105 (114)
266 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-15 4.5E-20 116.1 11.6 75 47-130 13-96 (104)
267 2cpx_A Hypothetical protein FL 99.6 7.8E-16 2.7E-20 119.5 10.4 81 47-130 23-107 (115)
268 1oo0_B CG8781-PA, drosophila Y 99.6 1.1E-15 3.6E-20 117.8 11.0 75 47-128 24-106 (110)
269 2div_A TRNA selenocysteine ass 99.6 4.6E-16 1.6E-20 117.5 8.3 79 47-128 7-94 (99)
270 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 128.2 5.3 78 222-304 45-125 (139)
271 3ns6_A Eukaryotic translation 99.6 2.9E-16 1E-20 119.0 7.0 76 47-129 4-94 (100)
272 3ulh_A THO complex subunit 4; 99.6 7.4E-16 2.5E-20 118.1 9.3 74 46-126 26-106 (107)
273 2dng_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 116.1 10.4 79 46-129 12-94 (103)
274 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.6E-16 8.8E-21 119.3 6.6 73 47-128 17-98 (100)
275 1wg1_A KIAA1579 protein, homol 99.6 7.4E-16 2.5E-20 113.9 8.9 76 48-129 4-79 (88)
276 2cpi_A CCR4-NOT transcription 99.6 5.4E-16 1.9E-20 119.8 8.5 77 46-129 12-102 (111)
277 2fy1_A RNA-binding motif prote 99.6 1.2E-15 4.1E-20 118.8 10.5 77 46-129 4-87 (116)
278 2pe8_A Splicing factor 45; RRM 99.6 1.4E-15 4.7E-20 116.2 10.5 77 222-301 7-93 (105)
279 3md3_A Nuclear and cytoplasmic 99.6 9.9E-16 3.4E-20 125.9 10.4 78 224-304 1-81 (166)
280 2do0_A HnRNP M, heterogeneous 99.6 1.7E-15 5.7E-20 117.4 11.1 76 46-128 12-94 (114)
281 1fjc_A Nucleolin RBD2, protein 99.6 4.5E-16 1.5E-20 116.9 7.6 76 46-128 13-91 (96)
282 2adc_A Polypyrimidine tract-bi 99.6 7.2E-16 2.4E-20 134.5 9.9 78 221-302 32-110 (229)
283 3ex7_B RNA-binding protein 8A; 99.6 1.3E-15 4.6E-20 120.2 10.5 77 47-130 20-104 (126)
284 2dhg_A TRNA selenocysteine ass 99.6 5E-16 1.7E-20 118.4 7.7 77 47-130 7-92 (104)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.3E-15 8E-20 120.8 12.0 74 45-125 59-140 (140)
286 2ek1_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 115.1 8.6 78 47-127 13-94 (95)
287 1s79_A Lupus LA protein; RRM, 99.6 8.3E-16 2.8E-20 117.1 8.6 75 46-128 8-89 (103)
288 3p5t_L Cleavage and polyadenyl 99.6 1.6E-16 5.6E-21 118.0 4.6 76 50-128 2-83 (90)
289 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-15 4.6E-20 115.4 9.7 78 47-128 15-95 (101)
290 2m2b_A RNA-binding protein 10; 99.6 7.6E-16 2.6E-20 122.6 8.7 78 47-128 21-108 (131)
291 2dgw_A Probable RNA-binding pr 99.6 2.5E-15 8.5E-20 111.7 10.9 77 47-128 8-87 (91)
292 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-15 4.1E-20 145.1 11.4 79 221-302 100-182 (437)
293 3pgw_A U1-A; protein-RNA compl 99.6 1.8E-15 6.1E-20 135.8 11.5 81 220-303 6-91 (282)
294 2i2y_A Fusion protein consists 99.6 2.3E-15 7.7E-20 122.6 10.6 76 46-128 70-148 (150)
295 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.2E-20 116.5 8.4 78 45-130 12-97 (105)
296 3ucg_A Polyadenylate-binding p 99.6 1.6E-15 5.6E-20 112.0 8.9 73 48-128 5-85 (89)
297 1p1t_A Cleavage stimulation fa 99.6 4.4E-16 1.5E-20 118.7 5.9 77 47-130 6-90 (104)
298 2nlw_A Eukaryotic translation 99.6 2.4E-15 8.1E-20 115.0 9.9 75 47-128 13-100 (105)
299 1x4b_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 118.2 8.9 77 46-130 24-108 (116)
300 2hgm_A HNRPF protein, heteroge 99.6 1.3E-15 4.3E-20 120.1 8.6 75 222-301 41-120 (126)
301 2dis_A Unnamed protein product 99.6 1.6E-15 5.5E-20 116.6 9.0 76 47-129 6-93 (109)
302 2e5i_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 113.9 14.1 75 49-130 25-104 (124)
303 2lea_A Serine/arginine-rich sp 99.6 8.5E-16 2.9E-20 123.0 7.3 78 45-129 43-128 (135)
304 2kt5_A RNA and export factor-b 99.6 2.6E-15 8.9E-20 118.2 10.0 76 46-128 32-114 (124)
305 2jwn_A Embryonic polyadenylate 99.6 9.6E-16 3.3E-20 120.7 7.3 73 48-128 35-115 (124)
306 2e44_A Insulin-like growth fac 99.6 4.2E-15 1.4E-19 111.5 10.5 75 47-128 13-92 (96)
307 1x4e_A RNA binding motif, sing 99.6 3.2E-16 1.1E-20 114.9 4.0 73 47-126 3-83 (85)
308 2cqg_A TDP-43, TAR DNA-binding 99.6 7.4E-15 2.5E-19 111.6 11.7 77 45-130 11-95 (103)
309 2cpy_A RNA-binding protein 12; 99.6 2.6E-15 9E-20 116.5 9.2 79 46-129 12-95 (114)
310 3s7r_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 110.1 9.1 72 46-125 8-87 (87)
311 2dha_A FLJ20171 protein; RRM d 99.6 9.7E-16 3.3E-20 120.4 6.6 76 222-301 22-104 (123)
312 1wel_A RNA-binding protein 12; 99.6 3.7E-15 1.3E-19 117.4 9.8 80 46-129 22-105 (124)
313 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 129.2 8.0 76 223-302 3-79 (198)
314 1x5o_A RNA binding motif, sing 99.6 9.5E-15 3.2E-19 113.2 11.9 79 46-128 22-112 (114)
315 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.2E-15 1.4E-19 121.8 10.4 76 47-129 37-120 (156)
316 1wg5_A Heterogeneous nuclear r 99.6 6.1E-15 2.1E-19 112.5 10.2 75 46-128 12-94 (104)
317 2j8a_A Histone-lysine N-methyl 99.6 2.4E-15 8.1E-20 116.9 7.9 75 224-301 3-95 (136)
318 2kn4_A Immunoglobulin G-bindin 99.6 1E-14 3.5E-19 119.7 12.2 76 47-129 68-151 (158)
319 2qfj_A FBP-interacting repress 99.6 4.2E-15 1.4E-19 127.8 10.1 77 223-302 28-108 (216)
320 2voo_A Lupus LA protein; RNA-b 99.6 5.2E-15 1.8E-19 125.6 10.3 80 223-306 109-191 (193)
321 2mss_A Protein (musashi1); RNA 99.6 2.2E-15 7.7E-20 107.7 6.7 67 51-125 1-75 (75)
322 1l3k_A Heterogeneous nuclear r 99.6 5.1E-15 1.7E-19 125.3 10.0 77 222-302 12-92 (196)
323 2db1_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 115.4 9.4 79 46-128 14-98 (118)
324 3egn_A RNA-binding protein 40; 99.6 6.1E-15 2.1E-19 119.1 9.8 81 46-129 42-131 (143)
325 3nmr_A Cugbp ELAV-like family 99.6 5E-15 1.7E-19 122.8 9.5 80 223-302 3-88 (175)
326 2hzc_A Splicing factor U2AF 65 99.6 2.9E-15 9.8E-20 110.2 7.1 74 47-124 4-86 (87)
327 2krb_A Eukaryotic translation 99.6 2.2E-15 7.6E-20 109.5 6.3 67 49-122 1-80 (81)
328 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-14 3.6E-19 113.1 10.0 59 222-281 7-72 (114)
329 2dnn_A RNA-binding protein 12; 99.6 7.6E-15 2.6E-19 112.8 8.5 77 47-128 14-93 (109)
330 3v4m_A Splicing factor U2AF 65 99.6 9.8E-15 3.4E-19 111.5 8.9 77 221-300 3-95 (105)
331 2bz2_A Negative elongation fac 99.6 1.3E-14 4.5E-19 113.7 9.8 74 47-129 37-112 (121)
332 2ki2_A SS-DNA binding protein 99.6 1.2E-15 4E-20 113.2 3.2 72 50-129 2-81 (90)
333 2hgl_A HNRPF protein, heteroge 99.6 9.2E-15 3.2E-19 116.8 8.6 79 46-128 41-125 (136)
334 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.4E-19 108.5 8.9 73 47-128 6-82 (94)
335 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-14 4.3E-19 120.2 9.6 77 47-130 70-154 (165)
336 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7.3E-15 2.5E-19 105.4 6.8 72 50-125 1-76 (77)
337 3sde_A Paraspeckle component 1 99.5 1.6E-14 5.6E-19 128.3 10.6 76 221-301 20-95 (261)
338 3beg_B Splicing factor, argini 99.5 8.4E-15 2.9E-19 113.8 7.6 72 48-126 15-92 (115)
339 3q2s_C Cleavage and polyadenyl 99.5 5.9E-15 2E-19 128.6 7.2 75 48-129 67-151 (229)
340 1wez_A HnRNP H', FTP-3, hetero 99.5 1.4E-14 4.6E-19 110.2 8.1 78 47-128 13-92 (102)
341 2lmi_A GRSF-1, G-rich sequence 99.5 5.3E-15 1.8E-19 113.4 5.3 78 47-129 9-93 (107)
342 2lcw_A RNA-binding protein FUS 99.3 8.9E-16 3E-20 119.5 0.0 78 47-131 5-98 (116)
343 3u1l_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.3E-19 125.4 8.3 81 46-130 131-231 (240)
344 2f3j_A RNA and export factor b 99.5 2.9E-14 1E-18 119.3 9.2 76 46-128 85-167 (177)
345 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.8E-13 6.2E-18 103.3 12.6 75 223-303 10-91 (100)
346 3d2w_A TAR DNA-binding protein 99.5 6.1E-14 2.1E-18 103.8 9.6 74 46-128 8-84 (89)
347 3tht_A Alkylated DNA repair pr 99.5 2.7E-14 9.2E-19 130.8 9.1 79 220-300 15-97 (345)
348 2hgn_A Heterogeneous nuclear r 99.5 5.4E-15 1.9E-19 118.6 4.0 76 46-128 43-123 (139)
349 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 4E-19 103.8 5.2 67 51-125 1-75 (75)
350 2g4b_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 116.8 9.5 75 222-302 3-88 (172)
351 1wf0_A TDP-43, TAR DNA-binding 99.5 1.7E-14 5.9E-19 106.4 5.7 73 47-130 3-80 (88)
352 3s6e_A RNA-binding protein 39; 99.5 9.6E-14 3.3E-18 107.4 10.0 76 222-300 6-91 (114)
353 2cjk_A Nuclear polyadenylated 99.5 3.3E-14 1.1E-18 117.1 7.9 75 223-302 3-81 (167)
354 2yh0_A Splicing factor U2AF 65 99.5 6.8E-14 2.3E-18 118.5 9.8 74 223-302 4-88 (198)
355 1fje_B Nucleolin RBD12, protei 99.5 1.2E-13 4.3E-18 114.7 9.9 75 47-128 97-174 (175)
356 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5.1E-18 107.0 9.6 76 222-300 19-107 (118)
357 2hgm_A HNRPF protein, heteroge 99.5 2.8E-14 9.5E-19 112.3 5.4 76 47-127 40-120 (126)
358 2xs2_A Deleted in azoospermia- 99.5 3.2E-14 1.1E-18 107.9 5.1 74 47-129 7-87 (102)
359 3pgw_S U1-70K; protein-RNA com 99.5 2E-13 6.9E-18 129.8 11.0 77 46-129 99-183 (437)
360 2dha_A FLJ20171 protein; RRM d 99.5 9E-14 3.1E-18 109.1 7.0 78 47-128 21-105 (123)
361 1jmt_A Splicing factor U2AF 35 99.5 2.7E-14 9.2E-19 108.8 3.6 69 228-299 20-103 (104)
362 2dit_A HIV TAT specific factor 99.4 9.7E-13 3.3E-17 101.6 10.7 77 47-130 13-104 (112)
363 2dnl_A Cytoplasmic polyadenyla 99.4 2.6E-13 9E-18 105.1 7.3 74 47-126 6-86 (114)
364 3tht_A Alkylated DNA repair pr 99.4 7E-13 2.4E-17 121.4 9.9 78 45-126 14-97 (345)
365 2pe8_A Splicing factor 45; RRM 99.4 1.6E-12 5.5E-17 99.1 9.6 75 47-128 6-94 (105)
366 2voo_A Lupus LA protein; RNA-b 99.4 1.8E-12 6.1E-17 109.9 8.7 73 48-128 108-187 (193)
367 2dnr_A Synaptojanin-1; RRM dom 99.3 6.5E-12 2.2E-16 91.4 8.7 75 220-302 4-86 (91)
368 1owx_A Lupus LA protein, SS-B, 99.3 1.9E-11 6.4E-16 94.8 10.7 75 219-298 14-92 (121)
369 2j8a_A Histone-lysine N-methyl 99.3 2.8E-12 9.6E-17 99.6 5.9 72 50-128 3-96 (136)
370 3v4m_A Splicing factor U2AF 65 99.3 2.2E-11 7.5E-16 92.8 9.3 75 47-128 3-97 (105)
371 2d9o_A DNAJ (HSP40) homolog, s 99.2 1E-10 3.4E-15 88.1 10.6 72 49-129 10-91 (100)
372 1jmt_A Splicing factor U2AF 35 99.2 1.1E-11 3.7E-16 94.3 3.9 65 54-125 20-103 (104)
373 1ufw_A Synaptojanin 2; RNP dom 99.2 4.4E-11 1.5E-15 87.4 5.9 73 219-299 11-92 (95)
374 3s6e_A RNA-binding protein 39; 99.2 1.4E-10 4.9E-15 89.4 9.1 76 47-129 5-94 (114)
375 3ue2_A Poly(U)-binding-splicin 99.1 1.3E-10 4.3E-15 90.3 8.4 73 48-127 19-108 (118)
376 2dnr_A Synaptojanin-1; RRM dom 98.9 2.6E-09 9E-14 77.7 7.3 73 47-127 5-85 (91)
377 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.8E-14 92.6 7.9 63 235-300 141-211 (222)
378 1owx_A Lupus LA protein, SS-B, 98.8 2.3E-08 7.7E-13 77.4 8.9 73 47-126 16-94 (121)
379 2l9w_A U4/U6 snRNA-associated- 98.7 3.7E-08 1.3E-12 73.4 8.4 70 223-297 21-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 3.5E-08 1.2E-12 72.1 4.5 72 47-126 13-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.6E-11 75.7 7.1 61 61-128 141-213 (222)
382 1wey_A Calcipressin 1; structu 98.3 3.3E-06 1.1E-10 62.7 8.6 75 223-302 5-84 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 7.4E-06 2.5E-10 61.1 9.7 75 47-124 19-96 (117)
384 1wey_A Calcipressin 1; structu 97.8 9.9E-06 3.4E-10 60.1 2.8 71 49-127 5-83 (104)
385 1uw4_A UPF3X; nonsense mediate 97.7 0.00039 1.3E-08 50.6 10.2 76 224-299 2-85 (91)
386 2dhx_A Poly (ADP-ribose) polym 97.6 0.00039 1.3E-08 51.3 9.2 72 48-123 7-79 (104)
387 2dhx_A Poly (ADP-ribose) polym 97.4 0.003 1E-07 46.6 11.5 73 222-302 7-84 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.4 0.00061 2.1E-08 51.9 8.0 70 223-300 24-93 (119)
389 1uw4_A UPF3X; nonsense mediate 97.4 0.001 3.5E-08 48.4 8.4 73 50-126 2-86 (91)
390 1whv_A Poly(A)-specific ribonu 97.1 0.0016 5.3E-08 47.6 7.0 55 223-282 16-70 (100)
391 1whv_A Poly(A)-specific ribonu 97.1 0.0015 5.1E-08 47.6 6.8 54 49-108 16-70 (100)
392 3ctr_A Poly(A)-specific ribonu 97.1 0.0011 3.8E-08 48.4 5.9 54 224-282 7-60 (101)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0015 5.2E-08 47.7 4.1 54 49-108 6-60 (101)
394 2l08_A Regulator of nonsense t 96.6 0.0032 1.1E-07 46.1 5.1 76 49-126 9-94 (97)
395 2l08_A Regulator of nonsense t 96.5 0.0072 2.4E-07 44.2 6.4 77 223-299 9-93 (97)
396 3pq1_A Poly(A) RNA polymerase; 95.9 0.0044 1.5E-07 58.6 3.5 56 223-280 53-108 (464)
397 3p3d_A Nucleoporin 53; structu 95.8 0.012 4.2E-07 45.4 5.0 72 223-299 7-96 (132)
398 1wwh_A Nucleoporin 35, nucleop 94.9 0.13 4.4E-06 39.0 7.9 71 48-126 23-95 (119)
399 3pq1_A Poly(A) RNA polymerase; 92.7 0.065 2.2E-06 50.6 3.3 52 49-105 53-107 (464)
400 3d45_A Poly(A)-specific ribonu 88.4 1.5 5.1E-05 41.9 8.6 55 49-108 440-494 (507)
401 3d45_A Poly(A)-specific ribonu 88.1 1 3.5E-05 43.1 7.2 54 224-282 441-494 (507)
402 3p3d_A Nucleoporin 53; structu 87.5 0.95 3.3E-05 34.8 5.3 69 49-126 7-97 (132)
403 2g0c_A ATP-dependent RNA helic 84.6 1.9 6.6E-05 29.4 5.4 67 225-300 2-75 (76)
404 2eqj_A Metal-response element- 75.7 2 6.9E-05 28.6 2.7 21 76-96 30-50 (66)
405 2e5p_A Protein PHF1, PHD finge 73.0 2.6 9E-05 27.9 2.7 21 76-96 26-46 (68)
406 2m0o_A PHD finger protein 1; t 71.3 3.4 0.00012 28.2 3.0 21 76-96 43-63 (79)
407 2e5q_A PHD finger protein 19; 68.8 2 6.8E-05 28.1 1.4 20 77-96 25-44 (63)
408 4hcz_A PHD finger protein 1; p 63.8 5.5 0.00019 25.7 2.7 21 76-96 20-40 (58)
409 3ts2_A Protein LIN-28 homolog 58.2 2.3 7.8E-05 33.5 0.2 28 64-95 2-29 (148)
410 2g0c_A ATP-dependent RNA helic 45.4 64 0.0022 21.4 6.6 72 51-126 2-75 (76)
411 4eyt_A Telomerase associated p 44.0 81 0.0028 22.2 8.2 57 222-282 11-67 (129)
412 4e8u_A Putative uncharacterize 43.2 45 0.0015 26.7 5.6 64 225-288 14-90 (172)
413 1g6p_A Cold shock protein TMCS 39.6 21 0.00071 23.5 2.7 20 77-96 2-21 (66)
414 4eyt_A Telomerase associated p 36.6 1.1E+02 0.0037 21.5 7.7 58 47-108 10-67 (129)
415 2kcm_A Cold shock domain famil 35.5 30 0.001 23.4 3.0 20 77-96 2-21 (74)
416 3cam_A Cold-shock domain famil 35.5 24 0.00083 23.3 2.5 19 78-96 4-22 (67)
417 1c9o_A CSPB, cold-shock protei 34.6 26 0.00088 23.1 2.5 19 78-96 4-22 (66)
418 2k5n_A Putative cold-shock pro 33.5 32 0.0011 23.3 2.9 20 77-96 4-23 (74)
419 3a0j_A Cold shock protein; OB- 33.0 28 0.00095 23.5 2.5 19 78-96 4-22 (73)
420 2f06_A Conserved hypothetical 31.6 1.4E+02 0.0047 22.3 6.8 49 238-287 87-136 (144)
421 1h95_A CSD, Y-box binding prot 31.4 30 0.001 23.7 2.5 19 78-96 11-29 (79)
422 3aqq_A Calcium-regulated heat 27.8 40 0.0014 26.2 2.9 21 76-96 63-83 (147)
423 3fry_A Probable copper-exporti 27.2 1.2E+02 0.0042 19.2 5.8 60 223-286 6-65 (73)
424 3i2z_B RNA chaperone, negative 25.0 57 0.0019 21.7 2.9 20 77-96 7-26 (71)
425 2xk0_A Polycomb protein PCL; t 24.9 32 0.0011 22.9 1.5 17 78-96 34-50 (69)
426 1fme_A FSD-EY peptide; beta-BE 23.7 61 0.0021 16.7 2.1 15 61-75 13-27 (28)
427 3ulj_A LIN28B, DNA-binding pro 23.6 50 0.0017 23.3 2.5 16 78-93 11-26 (90)
428 2ki0_A DS119; beta-alpha-beta, 23.5 51 0.0017 18.0 1.9 20 47-71 3-22 (36)
429 2e7g_A Putative ribosome-bindi 22.7 1.2E+02 0.004 22.8 4.7 35 247-281 43-78 (129)
430 1ik9_C DNA ligase IV; DNA END 20.5 66 0.0023 18.5 2.2 15 59-73 20-34 (37)
431 4a4j_A Pacszia, cation-transpo 20.2 1.6E+02 0.0056 18.1 5.1 55 224-280 4-61 (69)
432 2lss_A Cold shock-like protein 24.5 24 0.0008 23.6 0.0 19 78-96 7-25 (70)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5e-34 Score=257.52 Aligned_cols=241 Identities=23% Similarity=0.351 Sum_probs=151.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHH----HHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~----~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..++++|||+|||.++|+++|+ ++|+.| |.|+.++ ..||||||+|.+.++|.+|++.|||..|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~----G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc----CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC---
Confidence 3568999999999999999977 778777 8886553 24699999999999999999999999998
Q ss_pred CCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCC--CCCCCCCCCCC-----------------------C
Q 020297 117 KSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGY--SAPSPFHAPPA-----------------------P 171 (328)
Q Consensus 117 gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------~ 171 (328)
|+.|+|+|++.+....... .+...+..++............ ........... .
T Consensus 79 g~~l~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 79 DKPMRIQYAKTDSDIIAKM--KGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred CcEEEEEEeccCcchhhhh--cCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 8999999997765421111 1111111111000000000000 00000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCee
Q 020297 172 VWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFK 251 (328)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~ 251 (328)
..+...++.++ ....+.+..+...+..........+...++.......+++++|||+||+.++|+++|+++|++||.|+
T Consensus 157 ~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 157 MPGQPPYMPPP-GMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred CCCCCCCCCCC-CCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 00000010000 00000000000000000011111122223333445666789999999999999999999999999999
Q ss_pred EEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeC-CCCCceeEEEeec
Q 020297 252 QMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP-SSGSVGMRIQYSK 300 (328)
Q Consensus 252 ~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~-g~~~~~l~V~~ak 300 (328)
+|+|+. ..+|||||+|.+.++|.+||+.|||+.|. | +.|+|+|+|
T Consensus 236 ~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~ak 281 (282)
T 3pgw_A 236 EVRLVP-GRHDIAFVEFDNEVQAGAARDALQGFKITQN---NAMKISFAK 281 (282)
T ss_pred EEEEec-CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCC---CEEEEEEec
Confidence 999985 34699999999999999999999999999 7 999999997
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-34 Score=251.42 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=138.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.+||||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|++..+. |+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~ 85 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPA----GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GK 85 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Cc
Confidence 457899999999999999999999999 7774442 12599999999999999999999999998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|++.++........
T Consensus 86 ~i~~~~~~~~~~~~~----------------------------------------------------------------- 100 (213)
T 4f02_A 86 PVRIMWSQRDPSLRK----------------------------------------------------------------- 100 (213)
T ss_dssp ECEEEECCCCTHHHH-----------------------------------------------------------------
T ss_pred ccccccccccccccc-----------------------------------------------------------------
Confidence 999998865432111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASS 276 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~ 276 (328)
....+|||+||+.++|+++|+++|++||.|++++|+++.+ +|||||+|.+.++|++
T Consensus 101 ----------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 101 ----------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp ----------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred ----------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 0146899999999999999999999999999999987655 8999999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 277 VHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 277 Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
||+.|||..|+| +.|+|.|++.+
T Consensus 159 Ai~~lng~~~~g---~~i~V~~a~~~ 181 (213)
T 4f02_A 159 AIEKMNGMLLND---RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHTTCEETT---EECEEEECCCH
T ss_pred HHHHhCCCEECC---EEEEEEEcCCC
Confidence 999999999999 99999999865
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.9e-33 Score=246.50 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=144.1
Q ss_pred CCcceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.++++|||+|||. ++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 4688999999999 99999999999999 8886553 33699999999999999999999999998 899999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|++.+............ ...+. +...... .. ..
T Consensus 105 ~~a~~~~~~~~~~~~~~~--~~~~~------~~~~~~~------~~----------~~---------------------- 138 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQ--GLTKD------YGNSPLH------RF----------KK---------------------- 138 (229)
T ss_dssp ECCSCCCCCCCCSSSSTT--TTEEE------CTTCSSC------CC----------CS----------------------
T ss_pred EEecCccccCcccccccc--ccccc------cccCccc------cc----------CC----------------------
Confidence 999765331110000000 00000 0000000 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHh
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (328)
+ .........+++++|||+||+.++++++|+++|++|| .|.+++++. .++|||||+|.+.++|.+|++.|
T Consensus 139 -----~---~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l 209 (229)
T 2adc_A 139 -----P---GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDL 209 (229)
T ss_dssp -----T---TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHH
T ss_pred -----c---cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHH
Confidence 0 0000011233579999999999999999999999999 999999974 46899999999999999999999
Q ss_pred CCCeeC-CCCCceeEEEeecCC
Q 020297 282 QGAVIP-SSGSVGMRIQYSKNP 302 (328)
Q Consensus 282 nG~~i~-g~~~~~l~V~~ak~~ 302 (328)
||..|. | +.|+|.|++++
T Consensus 210 ~g~~~~~g---~~l~v~~a~~~ 228 (229)
T 2adc_A 210 HNHDLGEN---HHLRVSFSKST 228 (229)
T ss_dssp TTCBSSSS---CBCEEEECSSC
T ss_pred CCCccCCC---CeEEEEEecCC
Confidence 999999 7 99999999875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=230.39 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=135.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
|+|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG----GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG----SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc----CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEE
Confidence 689999999999999999999999 7774442 23599999999999999999999999998 899999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|+......
T Consensus 74 ~~~~~~~~~----------------------------------------------------------------------- 82 (166)
T 3md3_A 74 NWAFQSQQS----------------------------------------------------------------------- 82 (166)
T ss_dssp EECCCCCCC-----------------------------------------------------------------------
T ss_pred EEcCCCCCC-----------------------------------------------------------------------
Confidence 998543110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHH
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al 278 (328)
...+.++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.+|+
T Consensus 83 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 83 ----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp ----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred ----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 011257899999999999999999999999999999987632 789999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeec
Q 020297 279 HNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 279 ~~lnG~~i~g~~~~~l~V~~ak 300 (328)
+.|||..|.| +.|+|+|++
T Consensus 147 ~~l~g~~~~g---~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLNG---RPLRINWAA 165 (166)
T ss_dssp HHHTTCEETT---EECEEEESC
T ss_pred HHhCCCccCC---cEEEEEecC
Confidence 9999999999 999999986
No 5
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.6e-33 Score=231.57 Aligned_cols=156 Identities=17% Similarity=0.346 Sum_probs=136.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-------~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
+.++|||+|||.++|+++|+++|+.|+...| .|+.+ ...+|||||+|.+.++|.+|+ .|+|..+. |+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~---g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEET---TE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEec---Cc
Confidence 5789999999999999999999999954444 55444 456899999999999999999 79999998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|+|.+++.....
T Consensus 79 ~i~v~~~~~~~~~------------------------------------------------------------------- 91 (172)
T 2g4b_A 79 SLKIRRPHDYQPL------------------------------------------------------------------- 91 (172)
T ss_dssp ECEEECCSSCCCC-------------------------------------------------------------------
T ss_pred eeeecCCcccCCC-------------------------------------------------------------------
Confidence 9999886432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (328)
...++|||+|||.++|+++|+++|++||.|..+++..+.. +|||||+|.+.++|
T Consensus 92 ----------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 92 ----------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp ----------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred ----------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 0147899999999999999999999999999999987642 78999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEee
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.+|++.|||..|+| +.|+|.||
T Consensus 150 ~~A~~~l~g~~~~g---~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGD---KKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETT---EECEEEEC
T ss_pred HHHHHHcCCCEECC---eEEEEEeC
Confidence 99999999999999 99999997
No 6
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.8e-32 Score=234.08 Aligned_cols=179 Identities=16% Similarity=0.263 Sum_probs=141.5
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-------~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..++|||+|||.++|+++|+++|+.|+.+.| .|+.+ ...+|||||+|.+.++|.+|+ .|||..|. |+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~---g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET---TE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc---Cc
Confidence 4789999999999999999999999954434 45444 356899999999999999999 79999998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|+|.|++........ ... ...
T Consensus 79 ~i~v~~~~~~~~~~~~----------~~~---------~~~--------------------------------------- 100 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGM----------SEN---------PSV--------------------------------------- 100 (198)
T ss_dssp EEEEECCCCCCCCCCS----------SSC---------SSC---------------------------------------
T ss_pred eEEEeCCCCCCCCCCC----------cCC---------CcC---------------------------------------
Confidence 9999998654221100 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (328)
..+.........+.++|||+|||.++++++|+++|++||.|..+++..+.. +|||||+|.+.++|
T Consensus 101 -----------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 101 -----------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp -----------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred -----------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHH
Confidence 000000011123468999999999999999999999999999999987642 78999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.+|++.|||..|.| +.|+|.|++++
T Consensus 170 ~~A~~~l~g~~~~g---~~l~v~~a~~~ 194 (198)
T 2yh0_A 170 DQAIAGLNGMQLGD---KKLLVQRASVG 194 (198)
T ss_dssp HHHHHHHTTCEETT---EECEEEESCCC
T ss_pred HHHHHHcCCCEECC---EEEEEEECCCC
Confidence 99999999999999 99999999876
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-32 Score=226.41 Aligned_cols=155 Identities=18% Similarity=0.286 Sum_probs=135.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||+|||.++++++|+++|+.| |.|..++ + .+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~ 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAI----GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKR 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcE
Confidence 46899999999999999999999999 8775542 1 2599999999999999999999999998 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|+|.|++.+...
T Consensus 75 l~v~~~~~~~~~-------------------------------------------------------------------- 86 (168)
T 1b7f_A 75 LKVSYARPGGES-------------------------------------------------------------------- 86 (168)
T ss_dssp CEEEECCCCSST--------------------------------------------------------------------
T ss_pred EEEEecCCCccc--------------------------------------------------------------------
Confidence 999998643110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~ 275 (328)
...++|||+|||.++++++|+++|++||.|..+++.++.. +|||||+|.+.++|.
T Consensus 87 ---------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 87 ---------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp ---------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ---------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 1257899999999999999999999999999999987652 689999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEee
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+|++.|||..|.|. .++|+|.||
T Consensus 146 ~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred HHHHHhcCCEecCC-CeEEEEEeC
Confidence 99999999999763 379999996
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.5e-32 Score=236.58 Aligned_cols=194 Identities=10% Similarity=0.125 Sum_probs=139.8
Q ss_pred CCcceEEEcCCC-CcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLP-DDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp-~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.++++|||+||+ +++++++|+++|+.| |.|+.++ ..||||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF---GQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEEE
Confidence 357899999999 899999999999999 9886664 35799999999999999999999999999 899999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|++.+....+... . ..... .. .+++....... ...
T Consensus 75 ~~s~~~~~~p~~~~--~--~~~~~-~~-~~~~~~~~~~r-----------~~~--------------------------- 110 (205)
T 3tyt_A 75 CVSKQPAIMPGQSY--G--LEDGS-CS-YKDFSESRNNR-----------FST--------------------------- 110 (205)
T ss_dssp EECSCSCCCCCSCC--B--CTTSC-BS-EEECTTCTTCS-----------CSS---------------------------
T ss_pred EEccCCccCCCccc--c--cccCC-cc-ccccCCCcccc-----------ccC---------------------------
Confidence 99976543211000 0 00000 00 00000000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCe--eEEEEEecCC--cceEEEEEccHHHHHHHH
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGF--KQMKVLRQER--HTVCFIEFEDVNSASSVH 278 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i--~~v~i~~~~~--~g~aFV~F~~~~~A~~Al 278 (328)
+. ........+++++|||+|||+++|+++|+++|++||.| .+++++.+.+ +|||||+|.+.++|.+||
T Consensus 111 -----~~---~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 111 -----PE---QAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp -----HH---HHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred -----cc---cccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 00 00000112357899999999999999999999999999 8999986543 689999999999999999
Q ss_pred HHhCCCeeCCCCC-ceeEEEee
Q 020297 279 HNLQGAVIPSSGS-VGMRIQYS 299 (328)
Q Consensus 279 ~~lnG~~i~g~~~-~~l~V~~a 299 (328)
..|||+.|.|.+. .++.|.|+
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 9999999988432 25666664
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.9e-32 Score=227.95 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=136.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..+....+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 57899999999999999999999999 7774431 235999999999999999999999998865456
Q ss_pred CeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (328)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (328)
+.+.+.++.......
T Consensus 78 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 92 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA----------------------------------------------------------------- 92 (175)
T ss_dssp SCCEEEECGGGCCSC-----------------------------------------------------------------
T ss_pred cceEEcccccccccc-----------------------------------------------------------------
Confidence 888888775431100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHH
Q 020297 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSA 274 (328)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A 274 (328)
...++|||+|||.++|+++|+++|++||.|.++++.++.. +|||||+|.+.++|
T Consensus 93 -----------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 93 -----------------------VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp -----------------------GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHH
Confidence 1257899999999999999999999999999999987644 78999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+|++.|||..+.++..++|+|.|+.
T Consensus 150 ~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 150 QTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999998875323899999974
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8e-32 Score=223.43 Aligned_cols=154 Identities=17% Similarity=0.289 Sum_probs=133.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.++|||+|||.++++++|+++|+.| |.|..++ + .+|||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceE
Confidence 5799999999999999999999999 7774432 1 2499999999999999999999999998 8999
Q ss_pred EEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (328)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (328)
+|.|+.......
T Consensus 75 ~v~~~~~~~~~~-------------------------------------------------------------------- 86 (167)
T 1fxl_A 75 KVSYARPSSASI-------------------------------------------------------------------- 86 (167)
T ss_dssp EEEECCCCCGGG--------------------------------------------------------------------
T ss_pred EEEecCCCcccC--------------------------------------------------------------------
Confidence 999986432111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHH
Q 020297 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASS 276 (328)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~ 276 (328)
..++|||+|||.++++++|+++|++||.|..+++..+. .+|||||+|.+.++|.+
T Consensus 87 ---------------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 87 ---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp ---------------------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ---------------------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 14789999999999999999999999999999998754 27899999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEee
Q 020297 277 VHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 277 Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
|++.|||..|.|.. .+|+|.||
T Consensus 146 A~~~l~g~~~~g~~-~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGAT-EPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCS-SCCEEEEC
T ss_pred HHHHhcCCccCCCc-cceEEEeC
Confidence 99999999999821 25999986
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.4e-32 Score=230.48 Aligned_cols=162 Identities=20% Similarity=0.231 Sum_probs=136.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..+.++|||+|||.++|+++|+++|+.|+..++.+ ... ...+|||||+|.+.++|.+|++ |+|..+. |+.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET---TEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC---CeEEEE
Confidence 45689999999999999999999999996555522 222 2457999999999999999995 9999999 899999
Q ss_pred EEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (328)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (328)
.|++.+....
T Consensus 86 ~~~~~~~~~~---------------------------------------------------------------------- 95 (175)
T 1fje_B 86 EKPKGRDSKK---------------------------------------------------------------------- 95 (175)
T ss_dssp ECCCCSSCST----------------------------------------------------------------------
T ss_pred ecCCCccccc----------------------------------------------------------------------
Confidence 9986542110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
....++|||+|||.++|+++|+++|++||.|..+ ......+|||||+|.+.++|.+|++.||
T Consensus 96 -----------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 96 -----------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp -----------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred -----------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 0125789999999999999999999999999877 2222348999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020297 283 GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 283 G~~i~g~~~~~l~V~~ak~~ 302 (328)
|..|.| +.|+|+|++++
T Consensus 158 g~~~~g---~~i~v~~a~~k 174 (175)
T 1fje_B 158 GAEIDG---RSVSLYYTGEK 174 (175)
T ss_dssp EEEETT---EEEEEEECSSC
T ss_pred CCEECC---eEEEEEecCCC
Confidence 999999 99999999865
No 12
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=6.1e-32 Score=231.27 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=142.1
Q ss_pred cceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 49 VRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 49 ~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
+++|||+|||. ++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEE
Confidence 58999999999 99999999999999 7775443 33699999999999999999999999998 89999999
Q ss_pred cccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (328)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (328)
++.+............. ..+ ++... ... ... .
T Consensus 76 a~~~~~~~~~~~~~~~~--~~~------~~~~~------~~~-----r~~-----~------------------------ 107 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQG--LTK------DYGNS------PLH-----RFK-----K------------------------ 107 (198)
T ss_dssp CCCCSCCCSSSSSSSSS--CEE------ESSCC------CTT-----SSS-----S------------------------
T ss_pred ecCCCcCCCCcCCcccc--ccc------cccCC------chh-----hcc-----C------------------------
Confidence 97654311100000000 000 00000 000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCC
Q 020297 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (328)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (328)
+ .........+++++|||+||+.++++++|+++|++|| .|.+++++. .++|+|||+|.+.++|.+|++.|||
T Consensus 108 ---~---~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~-~~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 108 ---P---GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp ---C---CCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS-TTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred ---c---cccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe-CCCcEEEEEeCCHHHHHHHHHHhcC
Confidence 0 0000011233579999999999999999999999999 999999975 4589999999999999999999999
Q ss_pred CeeC-CCCCceeEEEeecCC
Q 020297 284 AVIP-SSGSVGMRIQYSKNP 302 (328)
Q Consensus 284 ~~i~-g~~~~~l~V~~ak~~ 302 (328)
..|. | +.|+|.|++++
T Consensus 181 ~~~~~g---~~l~v~~a~~~ 197 (198)
T 1qm9_A 181 HDLGEN---HHLRVSFSKST 197 (198)
T ss_dssp SCCSSC---CSCCEEEECCC
T ss_pred CccCCC---CeEEEEeeccc
Confidence 9999 7 99999999875
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.6e-32 Score=229.83 Aligned_cols=165 Identities=16% Similarity=0.293 Sum_probs=133.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++. ++..+. |+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~ 82 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQW----GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GR 82 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CE
Confidence 568999999999999999999999999 7774431 1259999999999999999985 899998 89
Q ss_pred eEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (328)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (328)
.|.|.++.......+
T Consensus 83 ~l~v~~~~~~~~~~~----------------------------------------------------------------- 97 (196)
T 1l3k_A 83 VVEPKRAVSREDSQR----------------------------------------------------------------- 97 (196)
T ss_dssp ECEEEECCC-----------------------------------------------------------------------
T ss_pred EeeeecccCcccccc-----------------------------------------------------------------
Confidence 999999865422110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHH
Q 020297 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (328)
.......++|||+|||.++|+++|+++|++||.|+.++|+.+.. +|||||+|.+.++|
T Consensus 98 ------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 98 ------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp -----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 00011257899999999999999999999999999999987642 88999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeecCCCCCC
Q 020297 275 SSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306 (328)
Q Consensus 275 ~~Al~~lnG~~i~g~~~~~l~V~~ak~~~~~~ 306 (328)
.+||+. +|..|.| +.|+|.|+.++...+
T Consensus 160 ~~A~~~-~~~~~~G---~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNG---HNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHHC-SCCEETT---EECEEEECC------
T ss_pred HHHHHh-CCcEECC---EEEEEEecCChhHhc
Confidence 999986 8999999 999999998874443
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.5e-32 Score=232.73 Aligned_cols=167 Identities=12% Similarity=0.232 Sum_probs=139.1
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..|. |+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~ 99 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF----GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GRN 99 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC---Cee
Confidence 46899999999999999999999999 8774442 13699999999999999999999999998 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|+|.++.......... ....
T Consensus 100 l~v~~~~~~~~~~~~~-------~~~~----------------------------------------------------- 119 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPII-------DQLA----------------------------------------------------- 119 (216)
T ss_dssp CEEECCSCCGGGHHHH-------HHHH-----------------------------------------------------
T ss_pred EEEecCCCccccchhh-------hhhh-----------------------------------------------------
Confidence 9999876543211000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~ 275 (328)
......++|||+||+.++|+++|+++|++||.|+.++|..+.. +|||||+|.+.++|.
T Consensus 120 ------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 120 ------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp ------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 0001257899999999999999999999999999999987642 789999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
+|++.|||..|+| +.|+|.|++.+
T Consensus 182 ~A~~~l~g~~~~g---~~i~V~~a~~~ 205 (216)
T 2qfj_A 182 DAVSSMNLFDLGG---QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHTTCBCSS---SBCEEEECSSC
T ss_pred HHHHHccCCEeCC---cEEEEEEecCC
Confidence 9999999999999 99999999876
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=9.3e-32 Score=223.48 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=132.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++. +..+. |+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeE
Confidence 57899999999999999999999999 8885553 1359999999999999999984 56777 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|.|.++..+....
T Consensus 73 i~v~~~~~~~~~~------------------------------------------------------------------- 85 (167)
T 2cjk_A 73 IDPKRAIPRDEQD------------------------------------------------------------------- 85 (167)
T ss_dssp CCCEECCCHHHHH-------------------------------------------------------------------
T ss_pred cccccccchhhcc-------------------------------------------------------------------
Confidence 9998875432111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~ 275 (328)
..++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.
T Consensus 86 ----------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 86 ----------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp ----------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred ----------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 146899999999999999999999999999999986532 789999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
+|++ |||..|.| +.|+|.|++++
T Consensus 144 ~A~~-~~~~~~~g---~~i~V~~a~pk 166 (167)
T 2cjk_A 144 RVCQ-NKFIDFKD---RKIEIKRAEPR 166 (167)
T ss_dssp HHHH-CSEECSSS---SCEEEEECCCC
T ss_pred HHHh-CCCEEeCC---eEEEEeecCCC
Confidence 9998 99999999 99999999876
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.1e-29 Score=226.91 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=135.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
.+.++|||+|||.++|+++|+++|+.| |.| +.+...+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY----GEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK---SRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG----CCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEEC---CceeEeee
Confidence 457899999999999999999999999 777 344566899999999999999999999999998 89999998
Q ss_pred cccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (328)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (328)
+..
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 842
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHh
Q 020297 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~l 281 (328)
.++|||+||+..+|+++|+++|+.||.|..|+|+.+.. +|||||+|.+.++|.+||..|
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 36799999999999999999999999999999987643 889999999999999999999
Q ss_pred C-CCeeCCCCCceeEEEeecCC
Q 020297 282 Q-GAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 282 n-G~~i~g~~~~~l~V~~ak~~ 302 (328)
| |..+.+...++|.|.|++..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 5 55554222289999998765
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.6e-29 Score=228.20 Aligned_cols=160 Identities=15% Similarity=0.186 Sum_probs=138.2
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..++|||+|||.++|+++|+++|+.| |.|..++ + .+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~ 166 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRT 166 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 45799999999999999999999999 7764331 1 2599999999999999999999999998 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|+|.|+..+....
T Consensus 167 i~v~~a~~~~~~~------------------------------------------------------------------- 179 (284)
T 3smz_A 167 LYVHWTDAGQLTP------------------------------------------------------------------- 179 (284)
T ss_dssp CEEEECCGGGCCT-------------------------------------------------------------------
T ss_pred EEEEECCCCCCCc-------------------------------------------------------------------
Confidence 9999986542110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCC-CHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~-te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~ 275 (328)
.....++|||+|||.++ |+++|+++|+.||.|.+++|+.+.. +|+|||+|.+.++|.
T Consensus 180 -------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 180 -------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp -------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHH
T ss_pred -------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHH
Confidence 00125789999999995 9999999999999999999987533 789999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~~ 303 (328)
+|+..|||..|.| +.|+|.|++++.
T Consensus 241 ~A~~~l~g~~~~g---~~l~v~~a~~~~ 265 (284)
T 3smz_A 241 EAQQQADGLSLGG---SHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHTTCEETT---EECEEEECCSSS
T ss_pred HHHHHhCCCccCC---eEEEEEEecCCC
Confidence 9999999999999 999999998763
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1e-29 Score=230.34 Aligned_cols=162 Identities=15% Similarity=0.274 Sum_probs=136.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-cEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..++|||+|||.++++++|+++|+.| | .|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 47899999999999999999999999 6 553332 24699999999999999999999999998 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|+|.|+..+....+.
T Consensus 189 l~v~~a~~~~~~~~~----------------------------------------------------------------- 203 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------------------------------------------------- 203 (292)
T ss_dssp CEEEECCCC-----------------------------------------------------------------------
T ss_pred EEEEECCCCcccccc-----------------------------------------------------------------
Confidence 999999754322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEEecCC-----cceEEEEEccHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNS 273 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~-~te~~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~ 273 (328)
.......++|||+|||.+ +|+++|+++|++||.|..|+|..+.. +|||||+|.+.++
T Consensus 204 -----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 204 -----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp --------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred -----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 001113689999999999 99999999999999999999986532 8999999999999
Q ss_pred HHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 274 ASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 274 A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
|.+|+ .|||..|.| +.|+|.|++++
T Consensus 267 A~~A~-~l~g~~~~g---~~i~V~~a~~k 291 (292)
T 2ghp_A 267 AERAL-QMNRSLLGN---REISVSLADKK 291 (292)
T ss_dssp HHHHG-GGTTEEETT---EEEEEEECCCC
T ss_pred HHHHH-HhcCCEECC---cEEEEEEecCC
Confidence 99999 999999999 99999999875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.3e-29 Score=227.18 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=135.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
+.++|||+|||.++|+++|+++|+.| | |+.+ ...+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDY----E-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR---ERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc----C-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC---CeEEEEEec
Confidence 46899999999999999999999999 7 6443 466899999999999999999999999998 899999875
Q ss_pred ccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (328)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
..
T Consensus 93 ~~------------------------------------------------------------------------------ 94 (284)
T 3smz_A 93 PT------------------------------------------------------------------------------ 94 (284)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHh
Q 020297 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~l 281 (328)
.++|||+|||.++|+++|+++|+.||.|..++++.+.. +|||||+|.+.++|.+|++.|
T Consensus 95 -----------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 95 -----------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp -----------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 36899999999999999999999999999999986543 789999999999999999999
Q ss_pred CCCeeCCCCCceeEEEeecCC
Q 020297 282 QGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 282 nG~~i~g~~~~~l~V~~ak~~ 302 (328)
||..|.| +.|+|.|++.+
T Consensus 158 ~~~~~~g---~~i~v~~a~~~ 175 (284)
T 3smz_A 158 LGKPLGP---RTLYVHWTDAG 175 (284)
T ss_dssp TTCEETT---EECEEEECCGG
T ss_pred CCCEeCC---cEEEEEECCCC
Confidence 9999999 99999999766
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.5e-29 Score=224.32 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=131.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||.++|+++|+++|+.| |.|..++ +.+|||||+|.+.++|.+|++ |+|..+. |+.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~---g~~ 109 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHC----GPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG---QNE 109 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGG----SCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET---TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC---CcE
Confidence 3568999999999999999999999999 8774442 247999999999999999996 9999998 899
Q ss_pred EEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020297 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (328)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (328)
|.|.++.
T Consensus 110 i~v~~~~------------------------------------------------------------------------- 116 (292)
T 2ghp_A 110 IIVSHLT------------------------------------------------------------------------- 116 (292)
T ss_dssp CEEEECC-------------------------------------------------------------------------
T ss_pred EEEEECC-------------------------------------------------------------------------
Confidence 9998762
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecC---CcceEEEEEccHHHHH
Q 020297 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQE---RHTVCFIEFEDVNSAS 275 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~---~~g~aFV~F~~~~~A~ 275 (328)
.++|||+|||.++++++|+++|+.|| .|..++++.+. .+|||||+|.+.++|.
T Consensus 117 -----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 117 -----------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp -----------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred -----------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999997654 4899999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 276 ~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
+|++.|||..|.| +.|+|.|+++.
T Consensus 174 ~A~~~l~g~~~~g---~~l~v~~a~~~ 197 (292)
T 2ghp_A 174 YCVEKLNGLKIEG---YTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHTTCEETT---EECEEEECCCC
T ss_pred HHHHHhCCCEeCC---cEEEEEECCCC
Confidence 9999999999999 99999999866
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=7.9e-24 Score=173.11 Aligned_cols=137 Identities=21% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHHh-cCceeCCCCCCeEEEEEcccccccccccccCCccccccccccCCCCCCCCCCCCCC
Q 020297 85 GEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPS 163 (328)
Q Consensus 85 ~~kg~aFV~F~~~~~A~~A~~~l-~g~~~~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (328)
..+|+++|+|.+.++|++|++.| ||..++ | .+.++++..+........ ..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~~~--------------------~~----- 61 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEGSH--------------------HH----- 61 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECSSS--------------------SC-----
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCccccccccc--------------------cc-----
Confidence 45699999999999999999999 999998 8 999998764422111000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHH
Q 020297 164 PFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGL 243 (328)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te~~L~~~ 243 (328)
..........+.++|||+|||+++|+++|+++
T Consensus 62 ------------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~ 93 (150)
T 2i2y_A 62 ------------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERA 93 (150)
T ss_dssp ------------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHH
T ss_pred ------------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 00000111224689999999999999999999
Q ss_pred hccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 244 FSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 244 F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
|++||.|.+++|+.+ .+|||||+|.+.++|.+||+.|||..|.| +.|+|.|++.+
T Consensus 94 F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 148 (150)
T 2i2y_A 94 FGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG---CRVRVELSNGE 148 (150)
T ss_dssp HHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS---SCCEEEECCCC
T ss_pred HHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEcCCC
Confidence 999999999999864 58999999999999999999999999999 99999999876
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=6.8e-23 Score=168.88 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+|||.++++++|+++|++||.|.+++|..+. .+|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS---SEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 36899999999999999999999999999999998653 38999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99876
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=146.64 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+++|||+|||.++|+++|+++|++||.|.+++|+++.. +|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---r~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS---KTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 468999999999999999999999999999999987543 7899999999999999999999999999 999999
Q ss_pred eecC
Q 020297 298 YSKN 301 (328)
Q Consensus 298 ~ak~ 301 (328)
|||+
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9985
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.9e-21 Score=149.96 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=65.3
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..+|||+|||.++|+++|+++|+.| |.|..++ +.||||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 5689999999999999999999999 7774442 23699999999999999999999999998 899999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
.|++.+
T Consensus 78 ~~a~~~ 83 (115)
T 4f25_A 78 GRFKSR 83 (115)
T ss_dssp EESSCC
T ss_pred EECCCc
Confidence 998754
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=141.25 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCe--eCCCCCceeEE
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV--IPSSGSVGMRI 296 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~--i~g~~~~~l~V 296 (328)
..+++++|||+|||+++|+++|+++|++||.|.+|+++ +.||||||+|.+.++|.+|++.|||.. |.| ++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G---r~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM--PKKRQALVEFEDVLGACNAVNYAADNQIYIAG---HPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETT---EEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCC---cEEEE
Confidence 34568999999999999999999999999999999998 458999999999999999999999986 778 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
+|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999876
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=138.69 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHh--CCCeeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL--QGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l--nG~~i~g~~~~~l~V~ 297 (328)
.+++++|||+||++++++++|+++|++||.|..|++++ +||||||+|.+.++|++|++.| ++..|.| ++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRN---QPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECC---cEEEEE
Confidence 34678999999999999999999999999999999984 4899999999999999999987 5788999 999999
Q ss_pred eecCCCCCCC
Q 020297 298 YSKNPFGKRK 307 (328)
Q Consensus 298 ~ak~~~~~~~ 307 (328)
|++.+..++.
T Consensus 87 ~a~~~~~~~~ 96 (101)
T 2cq1_A 87 YSNHKELKTS 96 (101)
T ss_dssp ECSCSSCCCC
T ss_pred EcCcccCcCC
Confidence 9998755543
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.8e-20 Score=139.53 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
...++|||+|||.++++++|+++|++||.|++|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG---KEVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC---CeEEEEE
Confidence 4579999999999999999999999999999999987543 7999999999999999999999999999 9999999
Q ss_pred ecCCCCCCCC
Q 020297 299 SKNPFGKRKD 308 (328)
Q Consensus 299 ak~~~~~~~~ 308 (328)
++.+...+.+
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2cqi_A 90 ATTPSSQKSG 99 (103)
T ss_dssp CCCTTCCCCC
T ss_pred CCCCcccccC
Confidence 9988665554
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.8e-20 Score=145.05 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=73.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.++|||+|||+++|+++|+++|++||.|++|+|+++.+ +|||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g---~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECC
Confidence 57899999999999999999999999999999987765 7899999999999999999999999999 999999998
Q ss_pred CCC
Q 020297 301 NPF 303 (328)
Q Consensus 301 ~~~ 303 (328)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 763
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=142.54 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC--CCeeCCCCCceeEEEe
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGMRIQY 298 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln--G~~i~g~~~~~l~V~~ 298 (328)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++ +||||||+|.+.++|++|++.|+ |..|.| ++|+|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---r~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETT---EECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEEE
Confidence 3578999999999999999999999999999999985 48999999999999999999886 478999 9999999
Q ss_pred ecCCCCCC
Q 020297 299 SKNPFGKR 306 (328)
Q Consensus 299 ak~~~~~~ 306 (328)
++.+..+.
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98874443
No 30
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=138.88 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC--eeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA--VIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~--~i~g~~~~~l~V~ 297 (328)
.+++++|||+||++++++++|+++|++||.|..|+|++ +||||||+|.+.++|.+|++.|||. .|.| ++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G---r~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAG---QQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS---SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEE
Confidence 34679999999999999999999999999999999984 5899999999999999999999765 4898 999999
Q ss_pred eecCCCCCC
Q 020297 298 YSKNPFGKR 306 (328)
Q Consensus 298 ~ak~~~~~~ 306 (328)
|++.+..++
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 999875544
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=141.08 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
++.++|||+||++++++++|+++|++||.|++|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---r~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG---NIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 3578999999999999999999999999999999987654 8999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++..
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998754
No 32
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=138.94 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCC--eeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA--VIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~--~i~g~~~~~l~V~~ 298 (328)
++++|||+|||+ ++|+++|+++|++||.|.+|+|++ +++||||+|.+.++|.+||+.|||. .|.| ++|+|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFG---KPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECC---cEEEEEE
Confidence 578999999999 999999999999999999999984 4799999999999999999999875 5999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-19 Score=135.49 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
....++|||+|||.++++++|+++|++||.|+.|+|+.+.+ +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 34579999999999999999999999999999999987644 8999999999999999999999999999 999999
Q ss_pred eecCCCCC
Q 020297 298 YSKNPFGK 305 (328)
Q Consensus 298 ~ak~~~~~ 305 (328)
|++.+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99887433
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=134.45 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+||+.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG---RPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 478999999999999999999999999999999987543 7899999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020297 298 YSKNPFG 304 (328)
Q Consensus 298 ~ak~~~~ 304 (328)
|++.+..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9987743
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=3.1e-19 Score=139.01 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
..++.++|||+||+.++++++|+++|++||.|++|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM---KRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 344578999999999999999999999999999999987653 7899999999999999999999999999 999
Q ss_pred EEEeecCCC
Q 020297 295 RIQYSKNPF 303 (328)
Q Consensus 295 ~V~~ak~~~ 303 (328)
+|.|++.+.
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999998773
No 36
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=136.53 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.+.++|||+||+.++|+++|+++|++||.|+.|+|..+.. ++||||+|.+.++|++||+.|||..|.| +.|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---YRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEc
Confidence 3478999999999999999999999999999999976544 8999999999999999999999999999 99999999
Q ss_pred cCCCC
Q 020297 300 KNPFG 304 (328)
Q Consensus 300 k~~~~ 304 (328)
+.+..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87743
No 37
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=136.09 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEec--CCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ--ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~--~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.+.++|||+|||.++|+++|+++|++||.|..|+|..+ ..++||||+|.+.++|++||+.|||..|.| +.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---KPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEEE
Confidence 35789999999999999999999999999999999876 238899999999999999999999999999 9999999
Q ss_pred ecCCCCCC
Q 020297 299 SKNPFGKR 306 (328)
Q Consensus 299 ak~~~~~~ 306 (328)
++.+...+
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99874443
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=140.81 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCC--CeeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG--~~i~g~~~~~l~V~ 297 (328)
.+++++|||+|||+++|+++|+++|++||.|++|+|++ +||||||+|.+.++|++|++.||+ ..|.| ++|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---r~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTT---BCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECC---eEEEEE
Confidence 44678999999999999999999999999999999985 489999999999999999999984 68999 999999
Q ss_pred eecCCCCCCC
Q 020297 298 YSKNPFGKRK 307 (328)
Q Consensus 298 ~ak~~~~~~~ 307 (328)
|++.+..++.
T Consensus 103 ~a~~k~~~~~ 112 (119)
T 2ad9_A 103 FSNHKELKTD 112 (119)
T ss_dssp ECSSSSCCCC
T ss_pred EccCCCCCcc
Confidence 9998755543
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=5.1e-19 Score=137.73 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
...++|||+||+.++++++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 3578999999999999999999999999999999987643 7899999999999999999999999999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999877443
No 40
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=2.4e-20 Score=149.58 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=72.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++|+++|+++|++||.|+.|+|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|+|.|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~V~~ 123 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQM 123 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS---SCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEE
Confidence 6889999999999999999999999999999998653 28899999999999999999999999999 9999999
Q ss_pred ecCCC
Q 020297 299 SKNPF 303 (328)
Q Consensus 299 ak~~~ 303 (328)
++.+.
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98763
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=135.97 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+|||.++++++|+++|++||.|+.|+|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG---KPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEE
Confidence 357899999999999999999999999999999998754 27899999999999999999999999999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887433
No 42
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=132.83 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+||+.++++++|+++|++||.|+.+++. ++||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG---VNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC---cEEEEEECC
Confidence 347899999999999999999999999999999998 5899999999999999999999999999 999999998
Q ss_pred CCCC
Q 020297 301 NPFG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7743
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=139.20 Aligned_cols=78 Identities=17% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCC----cceEEEEEccHHHHHHHHHHh-CCCeeCCCCCceeEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGMRI 296 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~l-nG~~i~g~~~~~l~V 296 (328)
+++|||+|||.++|+++|+++|++|| .|.+|+|++++. +|||||+|.+.++|++||+.| |+..|+| +.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g---r~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG---QKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT---EEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC---EEEEE
Confidence 36899999999999999999999999 899999986543 899999999999999999988 5678999 99999
Q ss_pred EeecCCC
Q 020297 297 QYSKNPF 303 (328)
Q Consensus 297 ~~ak~~~ 303 (328)
+|++++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998773
No 44
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=135.11 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-------CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-------~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
+.++|||+|||.++++++|+++|++||.|..|+|..+. .+|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG---HKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---eEE
Confidence 47899999999999999999999999999999998643 26899999999999999999999999999 999
Q ss_pred EEEeecCCCCC
Q 020297 295 RIQYSKNPFGK 305 (328)
Q Consensus 295 ~V~~ak~~~~~ 305 (328)
+|.|++.+...
T Consensus 81 ~V~~a~~~~~~ 91 (98)
T 2cpf_A 81 EVRISERATKP 91 (98)
T ss_dssp EEECSSCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877433
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=136.53 Aligned_cols=84 Identities=20% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|+.++|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.|+|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---RQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS---CCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 478999999999999999999999999999999986542 7899999999999999999999999999 999999
Q ss_pred eecCCCCCCCC
Q 020297 298 YSKNPFGKRKD 308 (328)
Q Consensus 298 ~ak~~~~~~~~ 308 (328)
|++.+...+..
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 1x5s_A 88 QAGKSSDNRSG 98 (102)
T ss_dssp EEECCCCCCCC
T ss_pred ECCCCCCCCCC
Confidence 99987555443
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=133.63 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=73.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+||+.++++++|+++|++||.|..|+|+.+. .+|||||+|.+.++|++||+ |||..|.| +.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG---KKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC---eEEEE
Confidence 347899999999999999999999999999999998654 38999999999999999999 99999999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999977433
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=134.71 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.++|||+||+.++++++|+++|++||.|+.|+|+.+.+ +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---RPMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC---CEEEEE
Confidence 4578999999999999999999999999999999987654 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99765
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=135.33 Aligned_cols=83 Identities=14% Similarity=0.295 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-----CcceEEEEEccHHHHHHHHHHh-CCCeeCCCCCce
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVG 293 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~l-nG~~i~g~~~~~ 293 (328)
....++|||+|||.++++++|+++|++||.|..|+|+.+. .+|||||+|.+.++|++||+.| ||..|.| +.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---RR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---CB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---CE
Confidence 3457899999999999999999999999999999998652 2899999999999999999999 9999999 99
Q ss_pred eEEEeecCCCCC
Q 020297 294 MRIQYSKNPFGK 305 (328)
Q Consensus 294 l~V~~ak~~~~~ 305 (328)
|+|.|++.+...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999877433
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=133.54 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.++|||+|||.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.|+|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE---NIIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 3478999999999999999999999999999999987553 6899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++++
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99876
No 50
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-19 Score=133.14 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
..+.++|||+|||.++++++|+++|++||.|+.+++.+ ++|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRG---KQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTT---BCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCC---ceEEEEEc
Confidence 34578999999999999999999999999999999984 58999999999999999999999999999 99999999
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
+.+
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 51
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=132.97 Aligned_cols=77 Identities=17% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeC--CCCCceeEEEe
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP--SSGSVGMRIQY 298 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~--g~~~~~l~V~~ 298 (328)
++.++|||+||+.++++++|+++|++||.|+.+++.+ +++||||+|.+.++|++|++.|||..|. | +.|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g---~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPD---RRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSS---CBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCC---cEEEEEE
Confidence 4578999999999999999999999999999999985 3799999999999999999999999999 7 8999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9876
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=9.1e-19 Score=133.99 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..+.++|||+||+.++++++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+.|||..|.|...+.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34579999999999999999999999999999999987644 789999999999999999999999998743469999
Q ss_pred EeecCCCC
Q 020297 297 QYSKNPFG 304 (328)
Q Consensus 297 ~~ak~~~~ 304 (328)
.|++.+..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99998743
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=3e-19 Score=131.21 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|..+++..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 478999999999999999999999999999999976532 8899999999999999999999999999 999999
Q ss_pred eec
Q 020297 298 YSK 300 (328)
Q Consensus 298 ~ak 300 (328)
|+|
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 986
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=137.20 Aligned_cols=76 Identities=13% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCC----eeCCCCCc
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGA----VIPSSGSV 292 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~--i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~----~i~g~~~~ 292 (328)
=.||||+||++++|+++|+++|++||. |.+|+|++++. ||||||+|.+.++|++||+.|||. .|+| |
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G---r 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG---K 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT---E
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC---E
Confidence 378999999999999999999999995 67899876543 899999999999999999999997 5899 9
Q ss_pred eeEEEeecC
Q 020297 293 GMRIQYSKN 301 (328)
Q Consensus 293 ~l~V~~ak~ 301 (328)
+|+|+|||+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999986
No 55
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-18 Score=139.49 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCce
Q 020297 218 KDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (328)
Q Consensus 218 ~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~ 293 (328)
......++|||+||+.++++++|+++|+.||.|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~ 113 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---KR 113 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS---CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eE
Confidence 3445579999999999999999999999999999999987654 8899999999999999999999999999 99
Q ss_pred eEEEeecCCCCC
Q 020297 294 MRIQYSKNPFGK 305 (328)
Q Consensus 294 l~V~~ak~~~~~ 305 (328)
|+|.|++.+..+
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999987443
No 56
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=7.5e-19 Score=137.41 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
...+.++|||+||+.++++++|+++|++||.|++++|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---KRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT---EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 344578999999999999999999999999999999986533 8999999999999999999999999999 999
Q ss_pred EEEeec
Q 020297 295 RIQYSK 300 (328)
Q Consensus 295 ~V~~ak 300 (328)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=132.31 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
++.++|||+|||.++++++|+++|++||.|..++|..+.. +|||||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---RVIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEE
Confidence 3578999999999999999999999999999999986543 7899999999999999999999999999 99999
Q ss_pred Eeec
Q 020297 297 QYSK 300 (328)
Q Consensus 297 ~~ak 300 (328)
+|+|
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.4e-19 Score=134.06 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+.++|||+|||.++++++|+++|++||.|..|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH---LILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC---cEEE
Confidence 34579999999999999999999999999999999987642 7899999999999999999999999999 9999
Q ss_pred EEeecCCC
Q 020297 296 IQYSKNPF 303 (328)
Q Consensus 296 V~~ak~~~ 303 (328)
|.|++.+.
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998773
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=131.97 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEE
Confidence 368999999999999999999999999999999987642 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99865
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=4.2e-19 Score=132.46 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+.++|||+|||.++++++|+++|++||.|..++|..+.+ +|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG---REIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT---BCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEc
Confidence 478999999999999999999999999999999987443 7999999999999999999999999999 99999999
Q ss_pred cCCCC
Q 020297 300 KNPFG 304 (328)
Q Consensus 300 k~~~~ 304 (328)
+.+..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87743
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=134.09 Aligned_cols=81 Identities=25% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQM-KVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v-~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
+.++|||+|||.++++++|+++|++||.|..+ +|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN---RPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT---EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 47899999999999999999999999999999 9986532 7899999999999999999999999999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+..+
T Consensus 81 ~~a~~~~~~ 89 (96)
T 1x5t_A 81 SYAFKKDSK 89 (96)
T ss_dssp EESCCCCCC
T ss_pred EEecccCCC
Confidence 999877433
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=134.97 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+|||.++++++|+++|++||.|..|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---RELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT---BCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEE
Confidence 3478999999999999999999999999999999986543 8999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++.+
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 999876
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=133.87 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~----~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..++|||+|||.++++++|+ ++|++||.|.+|+|+.+.. ++||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g---r~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS---KKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT---EEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 36899999999999999999 9999999999999986543 8999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
+|++.+
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999866
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=133.09 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|..++|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG---RMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS---CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 47899999999999999999999999999999998654 37999999999999999999999999999 999999
Q ss_pred eecCCC
Q 020297 298 YSKNPF 303 (328)
Q Consensus 298 ~ak~~~ 303 (328)
|++.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 998873
No 65
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=136.47 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
...++|||+||+.++++++|+++|++||.|..|+|+.+ +|||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG---HVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEecC
Confidence 35789999999999999999999999999999999854 8999999999999999999999999999 999999999
Q ss_pred CCCCC
Q 020297 301 NPFGK 305 (328)
Q Consensus 301 ~~~~~ 305 (328)
.+...
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87433
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=135.03 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|+.|+|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 47899999999999999999999999999999997653 38999999999999999999999999999 999999
Q ss_pred eecCCCCC
Q 020297 298 YSKNPFGK 305 (328)
Q Consensus 298 ~ak~~~~~ 305 (328)
|++.+..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887443
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=132.46 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+.++|||+|||.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 34578999999999999999999999999999999987543 7899999999999999999999999999 9999
Q ss_pred EEeecC
Q 020297 296 IQYSKN 301 (328)
Q Consensus 296 V~~ak~ 301 (328)
|+|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.2e-19 Score=133.71 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
++++|||+||+.++++++|+++|++||.|.+++|+.+.. +|||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS---RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEE
Confidence 368999999999999999999999999999999986543 8999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 99876
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=130.48 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=72.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.++|||+|||.++++++|+++|++||.|.+++|..+. .+|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG---QEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC---eEEEEE
Confidence 5899999999999999999999999999999997665 48999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++++
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99876
No 70
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=5.6e-19 Score=135.43 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCee---CCCCCce
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVI---PSSGSVG 293 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i---~g~~~~~ 293 (328)
.+.++|||+||+.++++++|+++|++||.|..|+|+.+.. +|||||+|.+.++|.+||+.|||..+ .| +.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g---~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN---RP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---ce
Confidence 3578999999999999999999999999999999987543 89999999999999999999999998 77 89
Q ss_pred eEEEeecCCCC
Q 020297 294 MRIQYSKNPFG 304 (328)
Q Consensus 294 l~V~~ak~~~~ 304 (328)
|+|.|++.+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987743
No 71
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.2e-19 Score=129.29 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=71.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.+|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG---RPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC---cEEEEEec
Confidence 5899999999999999999999999999999987643 8899999999999999999999999999 99999999
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 876
No 72
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=132.26 Aligned_cols=78 Identities=17% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
...++|||+||+.++++++|+++|++||.|. ++++.+..+|||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT---DTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS---SCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 3468999999999999999999999999997 677777779999999999999999999999999999 999999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 73
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=140.40 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEEec-CCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 221 PPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~----~~F~~~G~i~~v~i~~~-~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
.++++|||+||++.+++++|+ ++|++||.|++|.+... ..+|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---r~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---NPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT---SCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC---CEEE
Confidence 457899999999999999876 69999999999998653 348999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|.|++.+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999876
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=133.93 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=74.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhC------CCeeCCCC
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQ------GAVIPSSG 290 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~ln------G~~i~g~~ 290 (328)
.+.++|||+|||.++++++|+++|++||.|..|+|+.+. .+|||||+|.+.++|.+||+.|| |..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-- 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-- 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC--
Confidence 357899999999999999999999999999999998653 38999999999999999999999 999999
Q ss_pred CceeEEEeecCCC
Q 020297 291 SVGMRIQYSKNPF 303 (328)
Q Consensus 291 ~~~l~V~~ak~~~ 303 (328)
+.|+|.|++.+.
T Consensus 91 -~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 -RQLKVDLAVTRD 102 (111)
T ss_dssp -CEEEEECCCCCC
T ss_pred -EEEEEEECCCCc
Confidence 999999998773
No 75
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.5e-19 Score=129.16 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
..-|||+||++.+||++|+++|.+||.|.++++.. .||||||+|.+.++|.+|++.|||..+.| +.|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g---r~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN---TTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEECC
Confidence 57899999999999999999999999999999974 68999999999999999999999999999 999999983
No 76
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=130.62 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..+.++|||+||+.++++++|+++|++| |.|..+++. +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG---SPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 3457999999999999999999999999 999999886 4899999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020297 298 YSKNPFG 304 (328)
Q Consensus 298 ~ak~~~~ 304 (328)
|++.+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987743
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.6e-18 Score=132.24 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=74.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+||+.++|+++|+++|++||.|..|+|+ ++||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEG---ENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCC---CEEEEEEcC
Confidence 357899999999999999999999999999999997 4799999999999999999999999999 999999998
Q ss_pred CCCCCCCC
Q 020297 301 NPFGKRKD 308 (328)
Q Consensus 301 ~~~~~~~~ 308 (328)
.+...+..
T Consensus 82 ~~~~~~~~ 89 (103)
T 2dgu_A 82 PPDQKRKE 89 (103)
T ss_dssp CCCCCCCC
T ss_pred CCcccchh
Confidence 87555444
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=136.29 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
....++|||+||+.++++++|+++|++||.|+.++|..+.+ +|||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 34578999999999999999999999999999999986544 8999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 79
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=132.62 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~--------v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
++.++|||+||+.++++++|+++|++||.|.+ ++|+.++. +|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34789999999999999999999999999999 99987643 7899999999999999999999999999
Q ss_pred CCCceeEEEeec
Q 020297 289 SGSVGMRIQYSK 300 (328)
Q Consensus 289 ~~~~~l~V~~ak 300 (328)
+.|+|+|++
T Consensus 91 ---~~l~V~~A~ 99 (99)
T 2la6_A 91 ---NPIKVSFAT 99 (99)
T ss_dssp ---SBCEEEECC
T ss_pred ---cEEEEEecC
Confidence 999999985
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=135.30 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
..++.++|||+||+.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---RPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 334578999999999999999999999999999999987643 7899999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020297 295 RIQYSKNP 302 (328)
Q Consensus 295 ~V~~ak~~ 302 (328)
+|+|++.+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999876
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=135.62 Aligned_cols=81 Identities=21% Similarity=0.436 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+||+.++++++|+++|++||.|+.|+|..+. .+|||||+|.+.++|++|++.|||..|.| +.|+|.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG---KAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS---SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 46899999999999999999999999999999998754 27999999999999999999999999999 9999999
Q ss_pred ecCCCCC
Q 020297 299 SKNPFGK 305 (328)
Q Consensus 299 ak~~~~~ 305 (328)
++.+...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9877443
No 82
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=129.10 Aligned_cols=75 Identities=21% Similarity=0.481 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHh-CCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l-nG~~i~g~~~~~l~V~~a 299 (328)
...++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|++|++.| ||..|.| +.|+|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g---~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNG---RRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETT---EECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECC---CEEEEEec
Confidence 3478999999999999999999999999999999985 4799999999999999999999 9999999 99999998
Q ss_pred c
Q 020297 300 K 300 (328)
Q Consensus 300 k 300 (328)
|
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=129.83 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
..++|||+|||.++++++|+++|++||.|..+++.+ +||||+|.+.++|++|++.|||..|.| +.|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQG---KRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETT---EEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEEccC
Confidence 478999999999999999999999999999999974 599999999999999999999999999 9999999987
Q ss_pred CCC
Q 020297 302 PFG 304 (328)
Q Consensus 302 ~~~ 304 (328)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 733
No 84
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.77 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=71.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+|||.++|+++|+++|++||.|..+++++ +||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKG---KRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEECC
Confidence 3478999999999999999999999999999999984 599999999999999999999999999 999999998
Q ss_pred CCCC
Q 020297 301 NPFG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
.+..
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7733
No 85
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=133.94 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCC--CeeCCCCCceeEE
Q 020297 220 NPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGMRI 296 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG--~~i~g~~~~~l~V 296 (328)
..++++|||+||+++ +++++|+++|++||.|.+|+|+ ..||||||+|.+.++|++|++.||+ ..|.| +.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G---r~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQG---RCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS---SCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEE
Confidence 446899999999998 9999999999999999999997 4589999999999999999999865 56999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
+|++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999866
No 86
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=7e-19 Score=135.50 Aligned_cols=77 Identities=26% Similarity=0.474 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
...+.++|||+||+.++++++|+++|++||.|+.+++. +|||||+|.+.++|++|++.|||..|.| +.|+|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN---QPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEE
Confidence 34457999999999999999999999999999999998 6999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9876
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-18 Score=133.01 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=74.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+.++|||+|||.++|+++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+.||+ .|.| +.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g---~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG---RKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC---EEEE
Confidence 34579999999999999999999999999999999987542 78999999999999999999999 8999 9999
Q ss_pred EEeecCCCCCCC
Q 020297 296 IQYSKNPFGKRK 307 (328)
Q Consensus 296 V~~ak~~~~~~~ 307 (328)
|.|++.+...+.
T Consensus 90 V~~a~~~~~~~~ 101 (116)
T 2cqd_A 90 VNLAYLGAKPRS 101 (116)
T ss_dssp EEESTTTCCCCC
T ss_pred EEEcccCCCccc
Confidence 999987644443
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=3.4e-19 Score=137.62 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
...+|||+|||+++++++|+++|++|| .|..++|.....+|||||+|.+.++|++||+.|||..|.| +.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G---r~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG---SVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT---EEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECC
Confidence 367999999999999999999999999 9999999755568999999999999999999999999999 999999987
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 55
No 89
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.5e-19 Score=134.30 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
..++|||+||+.++++++|+++|++||.|.++++. ..+|||||+|.+.++|.+|++.|||..|.| +.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG---RNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT---EECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEeccC
Confidence 46899999999999999999999999999999998 568999999999999999999999999999 9999999986
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=138.90 Aligned_cols=79 Identities=15% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeE--EEEEecC----CcceEEEEEccHHHHHHHHHHhCCC----eeCCC
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--MKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGA----VIPSS 289 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~--v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~----~i~g~ 289 (328)
..++++|||+||++++|+++|+++|++||.|.. |+|+++. .+|||||+|.+. +|.+||+.|||. .|.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 345789999999999999999999999999977 9998765 289999999999 999999999999 9999
Q ss_pred CCceeEEEeecCC
Q 020297 290 GSVGMRIQYSKNP 302 (328)
Q Consensus 290 ~~~~l~V~~ak~~ 302 (328)
+.|+|.|++.+
T Consensus 98 --r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 --KTINVEFAKGS 108 (131)
T ss_dssp --CCCCCEECCCS
T ss_pred --EEEEEEECCCC
Confidence 99999999876
No 91
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.8e-18 Score=130.88 Aligned_cols=78 Identities=19% Similarity=0.488 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++|| |..|+|+.+.. +|||||+|.+.++|++|| .|||..|.| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD---RSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT---EECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC---eEEEEE
Confidence 468999999999999999999999996 99999987653 789999999999999999 899999999 999999
Q ss_pred eecCCCC
Q 020297 298 YSKNPFG 304 (328)
Q Consensus 298 ~ak~~~~ 304 (328)
|++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987743
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=134.19 Aligned_cols=81 Identities=11% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCee--------EEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~--------~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
...++|||+||+.++++++|+++|++||.|. .|+|+.+.. +|||||+|.+.++|++||+.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4579999999999999999999999999999 689886532 8899999999999999999999999999
Q ss_pred CCCceeEEEeecCCCC
Q 020297 289 SGSVGMRIQYSKNPFG 304 (328)
Q Consensus 289 ~~~~~l~V~~ak~~~~ 304 (328)
+.|+|.|++.+..
T Consensus 93 ---~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 ---SKLKVSLARKKPP 105 (113)
T ss_dssp ---EECEEECSSCCCC
T ss_pred ---CEEEEEECCCCCC
Confidence 9999999987743
No 93
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.4e-18 Score=131.11 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 220 ~~~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.+++++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG---KKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT---EECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEe
Confidence 34579999999998 99999999999999999999995 6999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=131.19 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
+.++|||+|||.++++++|+++|+.|| |..|+|+.+.. +|||||+|.+.++|++|| .|||..|.| +.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V 88 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---KRIRV 88 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---EECEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---cEEEE
Confidence 468999999999999999999999999 99999986542 789999999999999999 999999999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987443
No 95
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=132.00 Aligned_cols=78 Identities=22% Similarity=0.508 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCee-EEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCce---
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK-QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG--- 293 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~-~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~--- 293 (328)
+.++|||+|||.++++++|+++|++||.|. +++|+++.. +|||||+|.+.++|++|++.|||..|.| +.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG---ATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS---CSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC---CCcce
Confidence 478999999999999999999999999999 999987642 6899999999999999999999999999 78
Q ss_pred -eEEEeecCC
Q 020297 294 -MRIQYSKNP 302 (328)
Q Consensus 294 -l~V~~ak~~ 302 (328)
|+|.|++..
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999866
No 96
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=131.07 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
+.++|||+|||.++++++|+++|++||.|+.|+|..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 91 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG---RPINVSG 91 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT---EECEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---CEEEEEE
Confidence 468999999999999999999999999999999987643 7899999999999999999999999999 9999999
Q ss_pred ecC
Q 020297 299 SKN 301 (328)
Q Consensus 299 ak~ 301 (328)
+++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 97
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=134.16 Aligned_cols=79 Identities=9% Similarity=0.217 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCCCCHHHHH---HHhccCCCeeEEEEEecCC-------cceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 222 PCNTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~---~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
..++|||+|||+++++++|+ ++|++||.|..++|+.+.. +|||||+|.+.++|++||+.|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 36899999999999999999 9999999999999986542 4899999999999999999999999999
Q ss_pred ceeEEEeecCCC
Q 020297 292 VGMRIQYSKNPF 303 (328)
Q Consensus 292 ~~l~V~~ak~~~ 303 (328)
+.|+|.|++.+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998874
No 98
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=131.79 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhcc-CCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCe-eCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSA-QPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAV-IPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~-~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~-i~g~~~~~l~V 296 (328)
+.++|||+||+.++|+++|+++|++ ||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||.. |.| +.|+|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---~~l~v 84 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---KPVRL 84 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS---SCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC---EeEEE
Confidence 4689999999999999999999999 99999999987532 7899999999999999999999999 999 99999
Q ss_pred EeecCCCCC
Q 020297 297 QYSKNPFGK 305 (328)
Q Consensus 297 ~~ak~~~~~ 305 (328)
.|++.+...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877443
No 99
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=2.2e-18 Score=133.06 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
..++|||+||+.+ +++++|+++|++||.|+.|+| .++||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG---QTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT---EECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECC
Confidence 4689999999999 999999999999999999999 36999999999999999999999999999 999999998
Q ss_pred CCCCCCC
Q 020297 301 NPFGKRK 307 (328)
Q Consensus 301 ~~~~~~~ 307 (328)
.+...+.
T Consensus 99 ~~~~~~~ 105 (110)
T 1wf1_A 99 EPKPDRS 105 (110)
T ss_dssp CCCSCCC
T ss_pred CCCCCCC
Confidence 7644443
No 100
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-18 Score=131.00 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
++.++|||+|||. ++++++|+++|++||.|..++|. +|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG---KKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT---TTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEEc
Confidence 4578999999998 99999999999999999999996 5899999999999999999999999999 99999999
Q ss_pred cCCCCC
Q 020297 300 KNPFGK 305 (328)
Q Consensus 300 k~~~~~ 305 (328)
+.+...
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876433
No 101
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=131.48 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
...++|||+|||.++++++|+++|++||.|..++++.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEE
Confidence 3468999999999999999999999999998777665432 7999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++.+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998865
No 102
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=133.09 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
++++|||+||+.++++++|+++|++||.|..|+|..+.. +|||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEE
Confidence 468999999999999999999999999999999987644 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99865
No 103
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.6e-19 Score=132.49 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=67.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+|||+||+.++|+++|+++|++|| .|.+++|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS---CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC---EEEEEE
Confidence 4799999999999999999999999 999999987643 8899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
+++++
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 99876
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.7e-18 Score=137.63 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=74.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
...+.++|||+|||.++++++|+++|++||.|+.|+|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g---~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---EEE
Confidence 34457899999999999999999999999999999998653 38999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020297 295 RIQYSKNP 302 (328)
Q Consensus 295 ~V~~ak~~ 302 (328)
+|.|++.+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999876
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=132.30 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCe----eEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+.++|||+||+.++|+++|+++|++||.| ..+++.....+|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG---KILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEE
Confidence 3457899999999999999999999999998 67777755568999999999999999999999999999 9999
Q ss_pred EEeecCCCCC
Q 020297 296 IQYSKNPFGK 305 (328)
Q Consensus 296 V~~ak~~~~~ 305 (328)
|.|++.+...
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999987433
No 106
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.6e-18 Score=133.87 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|..++|..+.. +|||||+|.+.++|.+||+.|||..|.| +.|+|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEE
Confidence 468999999999999999999999999999999986542 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 99876
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-18 Score=126.64 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+|| ++|+++|+++|++||.|..|+|. ..+|||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT---EEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEECC
Confidence 34789999996 89999999999999999999995 568999999999999999999999999999 999999998
Q ss_pred CCCC
Q 020297 301 NPFG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
.+..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7733
No 108
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=131.65 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=72.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~~ 303 (328)
++|||+|||.++|+++|+++|++||.|.++++..+ .+|||||+|.+.++|++|++.|||..|.| +.|+|.|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG---SRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS---CCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC---cEEEEEEccCCC
Confidence 47999999999999999999999999999999865 68999999999999999999999999999 899999998774
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.7e-18 Score=143.56 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
++++|||+|||..+++++|+.+|++||.|..|+|+.+.. +|||||+|.+.++|.+||..|||..|.| +.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 368999999999999999999999999999999987542 7999999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 020297 298 YSKNPFGKR 306 (328)
Q Consensus 298 ~ak~~~~~~ 306 (328)
|++.+...+
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998764443
No 110
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=1.7e-18 Score=141.69 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
..+|||+||++++|+++|+++|++||.|++|+|..+..+|||||+|.+.++|++|++.|||+.|.|. ++.|+|+|+|.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEEEecCC
Confidence 4578999999999999999999999999999998655688999999999999999999999999652 279999999987
Q ss_pred C
Q 020297 303 F 303 (328)
Q Consensus 303 ~ 303 (328)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 111
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=2.3e-18 Score=135.93 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcce-EEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
...|||+||++.+|+++|+++|++||.|.+|+|..+ .+|| |||+|.+.++|++|++.|||+.|.| +++.|+|+|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEECSC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEecCC
Confidence 356779999999999999999999999999999864 4677 9999999999999999999999987 347999999997
Q ss_pred CC
Q 020297 302 PF 303 (328)
Q Consensus 302 ~~ 303 (328)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=130.20 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+|||.++++++|+++|++||.|.-++......+|||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG---RAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---EEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---eEEEEEEcC
Confidence 35799999999999999999999999998832222111238999999999999999999999999999 999999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.+
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 113
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.7e-18 Score=131.05 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.++|||+||+.++++++|+++|++||.|++|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---RPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 3578999999999999999999999999999999986543 7899999999999999999999999999 999999
Q ss_pred eec
Q 020297 298 YSK 300 (328)
Q Consensus 298 ~ak 300 (328)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.4e-18 Score=131.00 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEEec-CCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 221 PPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~----~~F~~~G~i~~v~i~~~-~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
+++++|||+|||.++++++|+ ++|++||.|..+++.+. ..+|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC---cEEE
Confidence 457899999999999999999 99999999999999742 237999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|+|++.+
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999876
No 115
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=133.30 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.++|||+|||.++++++|+++|++||.|..|+|. ..++||||+|.+.++|++||+.|||..|.| +.|+|+|++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP--EGGITAIVEFLEPLEARKAFRHLAYSKFHH---VPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC--SSSSCEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCEECC---eEEEEEECCCC
Confidence 6799999999999999999999999999999987 468999999999999999999999999999 99999999865
Q ss_pred C
Q 020297 303 F 303 (328)
Q Consensus 303 ~ 303 (328)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=128.11 Aligned_cols=76 Identities=26% Similarity=0.430 Sum_probs=69.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCC-CeeCCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG-AVIPSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG-~~i~g~~~~~l~V~~a 299 (328)
+.++|||+||+.++|+++|+++|++||. |..+.+. .+|||||+|.+.++|++|++.||| ..|.| +.|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG---KIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT---EECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC---EEEEEEEc
Confidence 4689999999999999999999999999 6666664 369999999999999999999999 99999 99999999
Q ss_pred cCCC
Q 020297 300 KNPF 303 (328)
Q Consensus 300 k~~~ 303 (328)
+.+.
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8773
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-17 Score=129.21 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCC-----Cc
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSG-----SV 292 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~-----~~ 292 (328)
...++|||+|||.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++||+.|||..|.+.. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3468999999999999999999999999999999987643 789999999999999999999999994210 17
Q ss_pred eeEEEeecCC
Q 020297 293 GMRIQYSKNP 302 (328)
Q Consensus 293 ~l~V~~ak~~ 302 (328)
+|+|.|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999976
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=130.88 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
....++|||+|||.++++++|+++|++||.|..|+|+.+.. +|||||+|.+.++|++||+. ||..|.| +.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG---RNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT---EEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC---EEEE
Confidence 34579999999999999999999999999999999987643 78999999999999999998 9999999 9999
Q ss_pred EEeecCCCCC
Q 020297 296 IQYSKNPFGK 305 (328)
Q Consensus 296 V~~ak~~~~~ 305 (328)
|.|++.+...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877433
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=131.82 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=77.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEE-ec----CCcceEEEEEccHHHHHHHHHHhC--CCeeCCCCCce
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVL-RQ----ERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVG 293 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~-i~~v~i~-~~----~~~g~aFV~F~~~~~A~~Al~~ln--G~~i~g~~~~~ 293 (328)
+.++|||+|||.++++++|+++|++||. |.+++++ .+ ..+|||||+|.+.++|++|++.|| +..|.| +.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---HQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---BC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---Ce
Confidence 4689999999999999999999999998 9999997 33 238999999999999999999996 599999 99
Q ss_pred eEEEeecCCCCCCCCCCCCCCCC
Q 020297 294 MRIQYSKNPFGKRKDGSHAIASP 316 (328)
Q Consensus 294 l~V~~ak~~~~~~~~~~~~~~~~ 316 (328)
|+|.|++.+.....+.......|
T Consensus 84 l~V~~a~~~~~~~~~~~~~~k~~ 106 (109)
T 2dis_A 84 IAVDWAEPEIDVDEDVMETVSGP 106 (109)
T ss_dssp CEEEESCSSCSTTTCCSSCCSCT
T ss_pred EEEEEcCCCCCcCHHHHHhccCC
Confidence 99999998754433333333333
No 120
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=130.08 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=65.2
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
++++|||+|||.++|+++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+. |+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~ 90 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKT 90 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 46789999999999999999999999 7774442 12599999999999999999999999998 899
Q ss_pred EEEEEccc
Q 020297 120 LHTEMAKK 127 (328)
Q Consensus 120 l~v~~a~~ 127 (328)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999975
No 121
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=3.1e-18 Score=135.49 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+||+.++|+++|+++|++||.|..|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 478999999999999999999999999999999986532 8899999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 020297 298 YSKNPFGKR 306 (328)
Q Consensus 298 ~ak~~~~~~ 306 (328)
|++.+...+
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998764443
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=4.8e-18 Score=132.16 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC-cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
++++|||+|||.++++++|+++|++||.|.+++|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---RYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---CBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEec
Confidence 468999999999999999999999999999999986544 8999999999999999999999999999 999999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.+
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=4.2e-18 Score=126.13 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++++++|+++|++||.|..+++..+.. +|||||+|.+.++|++|+ .|||..|.| +.|+|.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG---RQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC---cEEEEEE
Confidence 57999999999999999999999999999999987642 889999999999999999 999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9865
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-19 Score=129.10 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA---QMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE---ESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee---EEEeec
Confidence 478999999999999999999999999999999987543 8999999999999999999999999999 999988
Q ss_pred eec
Q 020297 298 YSK 300 (328)
Q Consensus 298 ~ak 300 (328)
|++
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=132.41 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+||+.++++++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++|| .|||..|.| +.|+|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---VPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---eEEEEE
Confidence 368999999999999999999999999999999986543 789999999999999999 999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 99765
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=130.70 Aligned_cols=76 Identities=11% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+|||.++|+++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+||. |||..|.| +.|+|.|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g---r~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE---TDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT---TTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC---EEEEEEE
Confidence 368999999999999999999999999999999987543 8999999999999999999 99999999 9999999
Q ss_pred ecC
Q 020297 299 SKN 301 (328)
Q Consensus 299 ak~ 301 (328)
++.
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 127
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=127.55 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCce--eCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMI--FDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~--~~~~~gr~l~v 122 (328)
.++++|||+|||+++|+++|+++|++| |.|..+ ...||||||+|++.++|.+|++.|+|.. +. ||+|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA---GHPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET---TEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC---CcEEEE
Confidence 468999999999999999999999999 888554 3568999999999999999999999876 56 899999
Q ss_pred EEccccc
Q 020297 123 EMAKKNL 129 (328)
Q Consensus 123 ~~a~~~~ 129 (328)
+|++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998763
No 128
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=124.48 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=64.9
Q ss_pred CCCe-EEEeCCCCCCCHHH----HHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNT-LFIGNLGESINEEE----LRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~-LfV~NL~~~~te~~----L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
++.| |||+||++++++++ |+++|++|| .|.+|. .|+|||+|.+.++|++|++.|||+.|.| |+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g---r~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG---NRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC---ceEE
Confidence 4566 99999999999988 558999995 999981 2999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|+|++.+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9999865
No 129
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=6e-18 Score=130.48 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc
Q 020297 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (328)
Q Consensus 217 ~~~~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~ 292 (328)
.+.....++|||+||+.++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+||+.+ |..|.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g---~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS---K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT---E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC---E
Confidence 33445678999999999999999999999999999999987543 899999999999999999986 599999 9
Q ss_pred eeEEEeecCCCC
Q 020297 293 GMRIQYSKNPFG 304 (328)
Q Consensus 293 ~l~V~~ak~~~~ 304 (328)
.|+|.|++.+..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987643
No 130
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=126.52 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEE-EEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMK-VLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~-i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
..++|||+|||.++++++|+++|++||.|.+++ |+.+...+.|||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN---FTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 368999999999999999999999999999995 7766666779999999999999999999999999 999999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 77
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=1.1e-17 Score=137.43 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+.++|||+|||.++|+++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD---RIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEE
Confidence 34578999999999999999999999999999999987643 7899999999999999999999999999 9999
Q ss_pred EEeecCCCCC
Q 020297 296 IQYSKNPFGK 305 (328)
Q Consensus 296 V~~ak~~~~~ 305 (328)
|.|++.+...
T Consensus 113 V~~a~~~~~~ 122 (156)
T 1h2v_Z 113 TDWDAGFKEG 122 (156)
T ss_dssp EEEESCCCTT
T ss_pred EEECCCCCCc
Confidence 9999876443
No 132
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.4e-17 Score=130.72 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCCe--EEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcce-EEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNT--LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~--LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
++++ |||+||++.+|+++|+++|++||.|++|+|.. + .|| |||+|.+.++|..|++.|||..|.| .++.|+|+|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEE
Confidence 3444 57999999999999999999999999999975 3 486 9999999999999999999999987 225899999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9977
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=130.08 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+||+.++++++|+++|++||.|..++|+.+.. +|||||+|.+.++|++|++.|||..|.| +.|+|.|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~ 84 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG---RALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS---SCBEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEe
Confidence 68999999999999999999999999999999987643 7999999999999999999999999999 9999999
Q ss_pred ecCCC
Q 020297 299 SKNPF 303 (328)
Q Consensus 299 ak~~~ 303 (328)
++.+.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98773
No 134
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=139.26 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..++|||+||++++|+++|+++|++|| .|.+|+|+.+.. +|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G---r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG---EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT---EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEeE
Confidence 468999999999999999999999999 999999987643 8899999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|.|++.+
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998643
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=126.54 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCC--CCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS--SGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g--~~~~~l~V~~a 299 (328)
..++|||+|||.++++++|+++|++||.|+.++|+.+ |||||+|.+.++|++||+.|||..|.| ...+.|+|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 3689999999999999999999999999999999865 999999999999999999999999986 11158999999
Q ss_pred cCCC
Q 020297 300 KNPF 303 (328)
Q Consensus 300 k~~~ 303 (328)
+.+.
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8863
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=129.87 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc-
Q 020297 222 PCNTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV- 292 (328)
Q Consensus 222 ~~~~LfV~NL~~~~------te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~- 292 (328)
..++|||+|||..+ ++++|+++|++||.|.+|+|.+..+ +|||||+|.+.++|.+||+.|||..|.| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST---TC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC---Cc
Confidence 36899999999999 7899999999999999999984332 8999999999999999999999999999 7
Q ss_pred eeEEEeecCC
Q 020297 293 GMRIQYSKNP 302 (328)
Q Consensus 293 ~l~V~~ak~~ 302 (328)
.|+|.|++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 137
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=131.54 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC-----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..++|||+||+.++++++|+++|++|| |.+|+|+.+. .+|||||+|.+.++|.+|| .|||..|.| +.|+|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---~~l~V 92 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---RRIRV 92 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---BCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC---eEEEE
Confidence 479999999999999999999999999 9999998765 2899999999999999999 899999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999865
No 138
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.14 Aligned_cols=78 Identities=19% Similarity=0.395 Sum_probs=68.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+||+.++++++|+++|+.|+ .++++.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V 86 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG---NKVTL 86 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEE
Confidence 3578999999999999999999999874 455554432 7899999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 020297 297 QYSKNPFG 304 (328)
Q Consensus 297 ~~ak~~~~ 304 (328)
.|++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99998743
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=125.05 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+||+.++++++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+ ++..|.| +.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g---~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG---RWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT---EEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC---eEEEE
Confidence 3468999999999999999999999999999999987643 7899999999999999999 5789999 99999
Q ss_pred EeecCCCC
Q 020297 297 QYSKNPFG 304 (328)
Q Consensus 297 ~~ak~~~~ 304 (328)
.|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99988733
No 140
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=5e-17 Score=128.18 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.++|||+||+.++++++|+++|++||.|++|+|..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEE
Confidence 357899999999999999999999999999999998654 37999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+..+
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99865
No 141
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=2.7e-18 Score=130.33 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=72.2
Q ss_pred CCeEEEeCCCC------CCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc
Q 020297 223 CNTLFIGNLGE------SINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (328)
Q Consensus 223 ~~~LfV~NL~~------~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~ 292 (328)
.++|||+|||. ++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|++||+.|||..|.|+ +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~--r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK--H 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--C
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--e
Confidence 68999999999 999999999999999999999987653 89999999999999999999999999974 7
Q ss_pred eeEEEeecCC
Q 020297 293 GMRIQYSKNP 302 (328)
Q Consensus 293 ~l~V~~ak~~ 302 (328)
.|+|.|++++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 142
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.4e-18 Score=129.14 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=69.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||.++++++|+++|++||.|..++++.+.. +|||||+|.+.++|++||+.|||..|.| +.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEE
Confidence 468999999999999999999999999998887775433 7899999999999999999999999999 999999
Q ss_pred eecC
Q 020297 298 YSKN 301 (328)
Q Consensus 298 ~ak~ 301 (328)
++.+
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9763
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=130.68 Aligned_cols=76 Identities=11% Similarity=0.281 Sum_probs=69.7
Q ss_pred CCCeEEE--eCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCee-----CCCCCcee
Q 020297 222 PCNTLFI--GNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI-----PSSGSVGM 294 (328)
Q Consensus 222 ~~~~LfV--~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i-----~g~~~~~l 294 (328)
++++||| +||+.++++++|+++|++||.|.+|.|. .+||||||+|.+.++|++|++.|||.+| .| ++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~--~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g---~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK---ITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC--TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE---EEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC---cEE
Confidence 4789999 6799999999999999999999999886 3589999999999999999999999998 55 899
Q ss_pred EEEeecCC
Q 020297 295 RIQYSKNP 302 (328)
Q Consensus 295 ~V~~ak~~ 302 (328)
.|.|++..
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99999855
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=1.4e-17 Score=122.86 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|++||+ ++|..|.| +.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG---RVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT---EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC---EEEEE
Confidence 3578999999999999999999999999999999987653 8899999999999999996 58899999 99999
Q ss_pred Eee
Q 020297 297 QYS 299 (328)
Q Consensus 297 ~~a 299 (328)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 145
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=123.16 Aligned_cols=76 Identities=9% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+|||.++++++|+++|+.| .|..++|+.+.. +|||||+|.+.++|++||+ |||..|.| +.|+|.|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g---r~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG---RYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT---EEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC---cEEEEEE
Confidence 46899999999999999999999999 999999987633 7899999999999999999 99999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9876
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=127.44 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+||+.++++++|+++|++||.|..+ ......+|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT---EEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEcC
Confidence 357899999999999999999999999998877 2222338999999999999999999999999999 999999998
Q ss_pred CCCC
Q 020297 301 NPFG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
.+..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7743
No 147
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.23 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+||+.++++++|+++|++||.|+.|+|+.+.. +|||||+|.+.++|++||+. ||..|.| +.|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g---~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG---RVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC---EEEEEE
Confidence 368999999999999999999999999999999987643 78999999999999999998 9999999 999999
Q ss_pred eecCCCCC
Q 020297 298 YSKNPFGK 305 (328)
Q Consensus 298 ~ak~~~~~ 305 (328)
|++.+...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99887443
No 148
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-18 Score=128.17 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=67.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhc--CceeCCCCCCeEEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVLHTE 123 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~--g~~~~~~~gr~l~v~ 123 (328)
+.++|||+|||+++|+++|+++|+.| |.|..+ ...||||||+|++.++|.+|++.|+ +..+. |++|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET---TEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEE
Confidence 47899999999999999999999999 888554 3568999999999999999999886 47888 9999999
Q ss_pred Ecccccc
Q 020297 124 MAKKNLF 130 (328)
Q Consensus 124 ~a~~~~~ 130 (328)
|++.+..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9976543
No 149
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=125.18 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhc--CceeCCCCCCe
Q 020297 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKSV 119 (328)
Q Consensus 44 ~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~--g~~~~~~~gr~ 119 (328)
....+.++|||+|||+++++++|+++|+.| |.|..+ ...||||||+|++.++|.+|++.|+ +..+. |++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR---NQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET---TEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CcE
Confidence 334678999999999999999999999999 888554 3558999999999999999999874 67788 999
Q ss_pred EEEEEccccc
Q 020297 120 LHTEMAKKNL 129 (328)
Q Consensus 120 l~v~~a~~~~ 129 (328)
|+|+|++.+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998654
No 150
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=121.84 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCcce-EEEcCCCCcCCHHHHH----HHHHhCCCCcc-cEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 47 DEVRT-IFITGLPDDVKERELQ----NLLRWLPGYEA-SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 47 ~~~~~-LfV~nLp~~~te~~L~----~~f~~~~~~~g-~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
+++.| |||+|||+++++++|+ ++|+.| | .|+.+.. |+|||.|.+.++|++|++.|+|..++ ||+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y----GG~Vl~Vtg--G~AfV~F~~~esA~~A~~~l~G~~l~---gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC----GGKVLSITG--CSAILRFINQDSAERAQKRMENEDVF---GNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT----TCCEEECCT--TCEEEEESSHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc----CCeeEEEec--CEEEEEECCHHHHHHHHHHhcCCccC---CceE
Confidence 35666 9999999999999965 677777 7 9999865 99999999999999999999999999 9999
Q ss_pred EEEEcccccccc
Q 020297 121 HTEMAKKNLFVK 132 (328)
Q Consensus 121 ~v~~a~~~~~~~ 132 (328)
+|+||+.+++..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999999887643
No 151
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.6e-17 Score=125.34 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 47 ~~~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
.+.++|||+|||. ++++++|+++|+.| |.|..++-.+|||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNF---GKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEET---TEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEec
Confidence 4689999999998 99999999999999 999777667899999999999999999999999998 899999999
Q ss_pred ccc
Q 020297 126 KKN 128 (328)
Q Consensus 126 ~~~ 128 (328)
+.+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 152
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.3e-17 Score=143.21 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCC-CCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLG-ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.++++|||+||+ .++|+++|+++|++||.|.+|+|++ ..+|||||+|.+.++|++||+.|||..|.| +.|+|.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK-SKPGAAMVEMADGYAVDRAITHLNNNFMFG---QKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT-TSTTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEEc
Confidence 357899999999 8999999999999999999999986 358999999999999999999999999999 99999999
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 855
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=125.71 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCc--eeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEM--IFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~--~~~~~~gr~l~ 121 (328)
..+.++|||+|||+++++++|+++|+.| |.|..+ ...||||||+|++.++|.+|++.|++. .+. |++|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA---GQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS---SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEE
Confidence 3568999999999999999999999999 888554 356899999999999999999999765 466 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|+|++.+.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99997654
No 154
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=124.50 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+|||+++|+++|+++|++|| +++|+|+.+.. +|||||+|.+.++|++||+ +||..|.+ +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---r~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH---RYVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS---SCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEEEE
Confidence 468999999999999999999999999 45999986654 7899999999999999995 89999999 9999999
Q ss_pred ecCCCCC
Q 020297 299 SKNPFGK 305 (328)
Q Consensus 299 ak~~~~~ 305 (328)
+...-+.
T Consensus 89 ~~~~~~~ 95 (102)
T 1wez_A 89 NSTAGTS 95 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8876433
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=124.03 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=64.7
Q ss_pred CeEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEEecCC--cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc-ee
Q 020297 224 NTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV-GM 294 (328)
Q Consensus 224 ~~LfV~NL~~~~------te~~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~-~l 294 (328)
++|||+|||..+ ++++|+++|++||.|.++++.+..+ +|||||+|.+.++|++|++.|||..|.| + .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS---SSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC---ceeE
Confidence 689999999999 7799999999999999999974332 8999999999999999999999999999 7 88
Q ss_pred EEE
Q 020297 295 RIQ 297 (328)
Q Consensus 295 ~V~ 297 (328)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 156
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-17 Score=123.08 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
..+.++|||+|||.++++++|+++|+.|+. |.|..++..+|||||+|.+.++|.+|++.|||..|. |+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD---GSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET---TEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC---CcEEEEEEC
Confidence 356899999999999999999999999944 677777777899999999999999999999999998 899999999
Q ss_pred ccccc
Q 020297 126 KKNLF 130 (328)
Q Consensus 126 ~~~~~ 130 (328)
+.+..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.3e-17 Score=123.36 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.++|||+|||.++++++|+++|++| .|.++++. ..+|||||+|.+.++|++|++.|||..|.| +.|+|.|++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---KDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT---EEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEEcCCC
Confidence 6889999999999999999999999 99999995 568999999999999999999999999999 99999998654
No 158
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=132.32 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+|||.++++++|+++|++||.|+.++|+.+. .+|||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 137 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRV 137 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---EEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 357999999999999999999999999999999997653 38999999999999999999999999999 99999
Q ss_pred Eee
Q 020297 297 QYS 299 (328)
Q Consensus 297 ~~a 299 (328)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=9.1e-18 Score=130.58 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
+++++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 78 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLV 78 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 468899999999999999999999999 7774442 24699999999999999999999999998 89999
Q ss_pred EEEcccc
Q 020297 122 TEMAKKN 128 (328)
Q Consensus 122 v~~a~~~ 128 (328)
|.|++.+
T Consensus 79 v~~a~~~ 85 (115)
T 3lqv_A 79 VLYYNAN 85 (115)
T ss_dssp EEECCHH
T ss_pred EEEecCC
Confidence 9999654
No 160
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.3e-17 Score=130.00 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+||+.++|+++|+++|++||.|++|+|..+.. +|||||+|.+.++|.+|| .|||..|.| +.|+|.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG---RTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEEE
Confidence 68999999999999999999999999999999987532 889999999999999999 899999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++..
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9865
No 161
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=6.5e-18 Score=121.04 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=66.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|++|++ |||..|.| +.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g---~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN---KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS---CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC---EEEEEEeC
Confidence 599999999999999999999999999999986542 7899999999999999998 99999999 99999986
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=126.09 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCc--eeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEM--IFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~--~~~~~~gr~l 120 (328)
.++.++|||+|||+ ++|+++|+++|+.| |.|..+. ..||||||+|++.++|.+|++.|++. .+. |++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF---GKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC---CcEE
Confidence 45789999999999 99999999999999 9886653 45799999999999999999999865 477 9999
Q ss_pred EEEEcccccc
Q 020297 121 HTEMAKKNLF 130 (328)
Q Consensus 121 ~v~~a~~~~~ 130 (328)
+|+|++....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999976543
No 163
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=4e-18 Score=129.48 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEe----cCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR----QERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~----~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+||+.++|+++|+++|++||.|.. .++. ...+|||||+|.+.++|++||+ |||..|.| +.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT---BCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC---cEEEEE
Confidence 4689999999999999999999999998876 3332 2348999999999999999999 99999999 999999
Q ss_pred eecCCC
Q 020297 298 YSKNPF 303 (328)
Q Consensus 298 ~ak~~~ 303 (328)
|++.+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998763
No 164
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=6.3e-17 Score=126.38 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=66.0
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 108 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--- 108 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 34568999999999999999999999999 8875542 22699999999999999999999999998
Q ss_pred CCeEEEEEcc
Q 020297 117 KSVLHTEMAK 126 (328)
Q Consensus 117 gr~l~v~~a~ 126 (328)
|+.|+|+|++
T Consensus 109 g~~l~V~~ak 118 (118)
T 2khc_A 109 TKRLKVQLKK 118 (118)
T ss_dssp TEECCEEEC-
T ss_pred CEEEEEEecC
Confidence 8999999985
No 165
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.9e-18 Score=127.37 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=68.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
++|||+||+.++++++|+++|++||.|.++++..+.. +|||||+|.+.+ |.+|+..|||..|.| +.|+|+|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g---~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG---RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS---SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC---eEEEEEEc
Confidence 5899999999999999999999999999999986543 889999999999 999999999999999 99999998
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
..+
T Consensus 78 ~~~ 80 (90)
T 2ki2_A 78 NPK 80 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 866
No 166
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=121.47 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++-.++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ---GKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET---TEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEEEEc
Confidence 4568999999999999999999999999 888777666789999999999999999999999998 899999999
Q ss_pred ccccc
Q 020297 126 KKNLF 130 (328)
Q Consensus 126 ~~~~~ 130 (328)
+.+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76643
No 167
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.4e-17 Score=122.29 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..|. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCe
Confidence 3568999999999999999999999999 7774442 24699999999999999999999999998 899
Q ss_pred EEEEEcccccc
Q 020297 120 LHTEMAKKNLF 130 (328)
Q Consensus 120 l~v~~a~~~~~ 130 (328)
|+|+|++.+..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999987543
No 168
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=124.97 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--eeC-CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKG-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~~~-~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
++|||+|||.++|+++|+++|+.| |.|.. +.. .+|||||+|.+.++|.+|++.|+|..+. |+.|+|+|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEcc
Confidence 489999999999999999999999 66633 323 5899999999999999999999999998 8999999997
Q ss_pred ccc
Q 020297 127 KNL 129 (328)
Q Consensus 127 ~~~ 129 (328)
.+.
T Consensus 74 ~~~ 76 (101)
T 2hvz_A 74 GMP 76 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 169
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=1.5e-17 Score=127.96 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++-.+|||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~ 101 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA---NQPLEVVYSK 101 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEESCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEec
Confidence 467899999999999999999999999 777444333899999999999999999999999998 9999999997
Q ss_pred ccc
Q 020297 127 KNL 129 (328)
Q Consensus 127 ~~~ 129 (328)
.+.
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 170
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=7.6e-17 Score=122.86 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.+.++|||+|||.++|+++|+++|+.| |.|..++-.++||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE---GENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET---TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEEEcC
Confidence 457899999999999999999999999 999888767899999999999999999999999998 8999999998
Q ss_pred cccc
Q 020297 127 KNLF 130 (328)
Q Consensus 127 ~~~~ 130 (328)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7644
No 171
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=127.40 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+||++++++++|+++|+.| |.|..++ ..||||||+|++.++|.+|++.|||..+. |+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr 76 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GN 76 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 467899999999999999999999999 8775542 23699999999999999999999999999 99
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+++..+.
T Consensus 77 ~i~V~~a~~~~ 87 (110)
T 3s8s_A 77 IIHAQLDIKGQ 87 (110)
T ss_dssp ECEEEECSTTH
T ss_pred EEEEEECCCCc
Confidence 99999997554
No 172
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=121.07 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++-.||||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH---GVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccC---CcEEEEEECC
Confidence 568999999999999999999999999 888766555899999999999999999999999998 8999999997
Q ss_pred cccc
Q 020297 127 KNLF 130 (328)
Q Consensus 127 ~~~~ 130 (328)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 173
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=126.68 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcC--ceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g--~~~~~~~gr~l~ 121 (328)
..+.++|||+|||+++|+++|+++|+.| |.|..+ ...||||||+|++.++|.+|++.|++ ..+. |++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBT---TBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceEC---CeEEE
Confidence 3568899999999999999999999999 777443 34589999999999999999999984 5777 89999
Q ss_pred EEEcccccc
Q 020297 122 TEMAKKNLF 130 (328)
Q Consensus 122 v~~a~~~~~ 130 (328)
|+|++.+..
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999986643
No 174
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=119.85 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
++|||+|||.++++++|+++|++||.|..+++..+.. +|||||+|.+.++|++|++.|| ..|.| +.|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g---~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS---CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC---EEEEEEec
Confidence 4799999999999999999999999999999987543 8899999999999999999999 99999 99999986
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=122.48 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRL 91 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEE
Confidence 3567899999999999999999999999 8774442 23699999999999999999999999998 8999
Q ss_pred EEEEcccccc
Q 020297 121 HTEMAKKNLF 130 (328)
Q Consensus 121 ~v~~a~~~~~ 130 (328)
+|+|++.+..
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 176
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=120.66 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~~ 302 (328)
.++|||+||+.++++++|+++|++||.|.+|.+....++ ||||+|.+.++|.+||+ |||..|.| +.|+|.++..+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g---~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGG---HRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETT---EECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECC---EEEEEEECCcC
Confidence 579999999999999999999999999999833222223 99999999999999999 99999999 99999998765
No 177
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.6e-17 Score=119.12 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=65.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
...|||+||++.+||++|+++|..| |.|..++ ..||||||+|.+.++|.+|++.|||..++ ||+|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLA---NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEECC
Confidence 5679999999999999999999999 9986653 56899999999999999999999999999 8999999994
No 178
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=4.1e-17 Score=127.61 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..++|||+||++++|+++|+++|+.||. |..|+|+.+.. +|||||+|.+.++|++||+ |||..|.| +.|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---RYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---EEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---eEEE
Confidence 4689999999999999999999999998 89999986544 7899999999999999999 99999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 179
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=119.13 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
+..++|||+|||.++++++|+++|+.|+.+. ..+.....+|||||+|.+.++|.+|++.|||..|. |+.|+|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS---SSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEcC
Confidence 4578999999999999999999999994443 22333456899999999999999999999999998 8999999997
Q ss_pred cc
Q 020297 127 KN 128 (328)
Q Consensus 127 ~~ 128 (328)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 180
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=126.76 Aligned_cols=76 Identities=14% Similarity=0.354 Sum_probs=66.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--e--e--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--Y--K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~--~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||.++++++|+++|+.| |.|.. + . ..+|||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 98 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRK 98 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 3568999999999999999999999999 65522 2 1 23799999999999999999999999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|+|++.+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=4.1e-17 Score=127.02 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCce-----eEEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG-----MRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~-----l~V~ 297 (328)
..+|||+||+.++++++|+++|++||.|+.|+|+.+ |||||+|.+.++|++||+.|||..|.| +. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRS---HEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCC---TTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECC---cEeeeEEEEec
Confidence 588999999999999999999999999999999854 999999999999999999999999999 78 7777
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
.++.+
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 77655
No 182
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=126.49 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i-~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
...++|||+|||+++|+++|+++|+.||.| ..|+|+.+.. +|||||+|.+.++|++||+. ||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g---r~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG---REAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT---EEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC---eEEEE
Confidence 347899999999999999999999999999 8899976543 89999999999999999987 9999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++.+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998755
No 183
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1e-18 Score=136.33 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=74.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~--------v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
.+.++|||+||+.++++++|+++|++||.|.. |+|+.+.. +|||||+|.+.++|++||+.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 88876532 8899999999999999999999999999
Q ss_pred CCCceeEEEeecCCCCC
Q 020297 289 SGSVGMRIQYSKNPFGK 305 (328)
Q Consensus 289 ~~~~~l~V~~ak~~~~~ 305 (328)
+.|+|.|++.+...
T Consensus 85 ---~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 ---NPIKVSFATRRADF 98 (116)
Confidence 99999999887444
No 184
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=134.79 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=64.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc--cEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g--~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...++|||+|||+++|+++|+++|+.| | .|+.++ ..||||||+|.+.++|.+||+.|||..|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--- 125 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--- 125 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 457899999999999999999999999 7 564432 12599999999999999999999999999
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
|+.|+|.|+..+.
T Consensus 126 Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 126 GEKVDVRPATRQN 138 (156)
T ss_dssp TEECEEEECCHHH
T ss_pred CeEeEEEEcCCCc
Confidence 9999999997653
No 185
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=125.00 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEE--eeCCcceEEEEeCCHHHHHHHHHHhcC--ceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~--~~~~kg~aFV~F~~~~~A~~A~~~l~g--~~~~~~~gr~l 120 (328)
..+.++|||+|||++ +++++|+++|+.| |.|.. +...||||||+|++.++|.+|++.|++ ..|. ||+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ---GRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSS---SSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEE
Confidence 456899999999998 9999999999999 77733 345689999999999999999998865 4577 8999
Q ss_pred EEEEccccccc
Q 020297 121 HTEMAKKNLFV 131 (328)
Q Consensus 121 ~v~~a~~~~~~ 131 (328)
+|+|++.+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999766543
No 186
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.3e-17 Score=120.42 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=63.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeC--CCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP--SSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~--g~~~~~l~V~~a 299 (328)
+..+|||+|||+++|+++|+++|++||.|.+++|++ ..||||||+|.+.++|. .|+|..+. | +.|+|.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~----~~~~~~~~~~g---~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQ----SLCGEDLIIKG---ISVHISNA 81 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHH----HHTTCEEEETT---EEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHH----HHcCCCcccCC---EEEEEEEc
Confidence 468999999999999999999999999999999986 36899999999999998 36777665 6 89999999
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
+++
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=131.67 Aligned_cols=80 Identities=18% Similarity=0.409 Sum_probs=70.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEEe-cCCcceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLR-QERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~--------v~i~~-~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
..++++|||+||++++|+++|+.+|++||.|.. +++.. ...+|||||+|.+.++|.+||..|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 345789999999999999999999999999876 44432 3448999999999999999999999999999
Q ss_pred CceeEEEeecCC
Q 020297 291 SVGMRIQYSKNP 302 (328)
Q Consensus 291 ~~~l~V~~ak~~ 302 (328)
+.|+|.|++..
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 99999999876
No 188
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=118.22 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=66.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHh-cCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l-~g~~~~~~~gr~l~v~ 123 (328)
.+.++|||+|||.++++++|+++|+.| |.|..+ ...||||||+|.+.++|.+|++.| +|..+. |+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEET---TEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEEE
Confidence 457899999999999999999999999 888554 345799999999999999999999 999998 8999999
Q ss_pred Ecc
Q 020297 124 MAK 126 (328)
Q Consensus 124 ~a~ 126 (328)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 189
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=1e-16 Score=117.58 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=65.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ + .+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 77 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GR 77 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---Cc
Confidence 568999999999999999999999999 8875542 1 3699999999999999999999999998 89
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
.|+|+|++
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999985
No 190
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=118.97 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=65.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 86 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GR 86 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---Cc
Confidence 467899999999999999999999999 8775442 13699999999999999999999999998 89
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
.|+|+|++
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=121.72 Aligned_cols=77 Identities=26% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
.+.++|||+|||.++++++|+++|+.| |.| +.+...||||||+|.+.++|.+|++.|+|..+. |+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR---GKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC---CceEEEEE
Confidence 467899999999999999999999999 766 444456899999999999999999999999998 89999999
Q ss_pred cccccc
Q 020297 125 AKKNLF 130 (328)
Q Consensus 125 a~~~~~ 130 (328)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 977543
No 192
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-16 Score=120.29 Aligned_cols=78 Identities=14% Similarity=0.352 Sum_probs=68.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRK 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 4568999999999999999999999999 8774442 23799999999999999999999999998 899
Q ss_pred EEEEEcccccc
Q 020297 120 LHTEMAKKNLF 130 (328)
Q Consensus 120 l~v~~a~~~~~ 130 (328)
|+|.|++.+..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 99999977643
No 193
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.2e-16 Score=130.70 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
....+|||+||++++|+++|+++|++| |.|.++ +..+|||||+|++.++|++|++.|||..|+. .|+.|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEE
Confidence 346779999999999999999999999 887444 2346899999999999999999999999961 1499999
Q ss_pred EEcccccc
Q 020297 123 EMAKKNLF 130 (328)
Q Consensus 123 ~~a~~~~~ 130 (328)
+|++.+..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987643
No 194
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=7.5e-17 Score=126.62 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=70.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+.++|||+|| ++|+++|+++|++||.|.+|+|. ..+|||||+|.+.++|++||+.|||..|.| +.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEeC
Confidence 35789999996 69999999999999999999996 568999999999999999999999999999 999999998
Q ss_pred CC
Q 020297 301 NP 302 (328)
Q Consensus 301 ~~ 302 (328)
.+
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 195
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=120.68 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~-v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+|||+++|+++|+++|++||.|.. |+|..+.. +|||||+|.+.++|++||+. ||..|+| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g---r~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH---RYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS---SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC---cEEEEE
Confidence 4689999999999999999999999999987 88865432 89999999999999999997 9999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 196
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=127.92 Aligned_cols=77 Identities=6% Similarity=0.047 Sum_probs=67.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+|||+++|+++|+++|+.||.|..+.++.+. .+|||||+|.+.++|.+||+ |||..|.| +.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN---RFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---SCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEEE
Confidence 46899999999999999999999999999874443222 28899999999999999999 99999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 197
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=119.44 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 84 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---G 84 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4568999999999999999999999999 7774432 12599999999999999999999999998 8
Q ss_pred CeEEEEEccc
Q 020297 118 SVLHTEMAKK 127 (328)
Q Consensus 118 r~l~v~~a~~ 127 (328)
+.|+|+|+++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 198
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-17 Score=126.60 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEE--EeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV--NYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~--~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
...++|||+|||.++++++|+++|+.| |.|. .+...||||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ---GRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEe
Confidence 347899999999999999999999999 7763 33456899999999999999999999999998 89999999
Q ss_pred cccc
Q 020297 125 AKKN 128 (328)
Q Consensus 125 a~~~ 128 (328)
++.+
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9753
No 199
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=121.12 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 84 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---G 84 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---C
Confidence 3568999999999999999999999999 8885542 13599999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|.|++.+..
T Consensus 85 ~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 KPIRVNKASAHNK 97 (105)
T ss_dssp CBCEEEETTTTSC
T ss_pred eEEEEEECCCCCc
Confidence 9999999976543
No 200
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=127.24 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=67.7
Q ss_pred CCcceEEEcCCCCcCCHHHHH----HHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~----~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.++++|||+|||+++++++|+ ++|+.| |.|+.+. ..||||||+|.+.++|.+|++.|||..+. |
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~---g 99 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ---G 99 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC---C
Confidence 457899999999999999977 688888 8885542 34699999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|+|++.+..
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987765
No 201
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=118.82 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
.+.++|||+|||.++|+++|+++|+.| |.|..++-.++||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK---GKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEECC
Confidence 568899999999999999999999999 999887766889999999999999999999999998 8999999997
Q ss_pred cc
Q 020297 127 KN 128 (328)
Q Consensus 127 ~~ 128 (328)
.+
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 202
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-16 Score=124.44 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=68.9
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----C----CcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G----EKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
.....++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 110 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--- 110 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34668999999999999999999999999 7774432 1 2699999999999999999999999998
Q ss_pred CCeEEEEEcccccc
Q 020297 117 KSVLHTEMAKKNLF 130 (328)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (328)
|+.|+|+|++.+..
T Consensus 111 g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 111 NKRLKVALAASGHQ 124 (139)
T ss_dssp SCEEEEEESSCCCC
T ss_pred CeEEEEEECCCCCC
Confidence 89999999987643
No 203
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=118.45 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 78 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GR 78 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---Cc
Confidence 568999999999999999999999999 8875542 13599999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|.|++.+..
T Consensus 79 ~l~V~~a~~~~~ 90 (99)
T 1whw_A 79 MLHVLPSTIKKE 90 (99)
T ss_dssp EEEEEECCCCST
T ss_pred EEEEEEcCCCcc
Confidence 999999987643
No 204
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=121.74 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 43 RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 43 ~~~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
.....+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 81 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--- 81 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---
Confidence 3344678999999999999999999999999 7774432 23699999999999999999999999998
Q ss_pred CCeEEEEEcccccc
Q 020297 117 KSVLHTEMAKKNLF 130 (328)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (328)
|+.|+|.|++.+..
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 TKPLYVALAQRKEE 95 (103)
T ss_dssp SSBCEEEECSSCCC
T ss_pred CcEEEEEEeccccc
Confidence 89999999987643
No 205
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=121.47 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcc-cEEEe-----e---CCcceEEEEeCCHHHHHHHHHHh-cCceeCCCCCC
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNY-----K---GEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKS 118 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-~i~~~-----~---~~kg~aFV~F~~~~~A~~A~~~l-~g~~~~~~~gr 118 (328)
.++|||+|||.++||++|+++|+.| | .|..+ + ..||||||+|.+.++|.+|++.| ++..+. |+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQ 73 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CE
Confidence 3689999999999999999999999 5 34222 1 24699999999999999999987 466788 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+|++++.
T Consensus 74 ~i~V~~a~~~~ 84 (91)
T 2lxi_A 74 KVSMHYSDPKP 84 (91)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999997653
No 206
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=120.39 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C------CcceEEEEeCCHHHHHHHHHHh-cCceeCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G------EKPMGFALFSTAQLAVAAKDAL-QEMIFDAE 115 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~------~kg~aFV~F~~~~~A~~A~~~l-~g~~~~~~ 115 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.| ||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~-- 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY-- 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--
Confidence 4568999999999999999999999999 8875542 1 2699999999999999999999 999998
Q ss_pred CCCeEEEEEcccccc
Q 020297 116 TKSVLHTEMAKKNLF 130 (328)
Q Consensus 116 ~gr~l~v~~a~~~~~ 130 (328)
|+.|+|+|++.+..
T Consensus 86 -g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 -GRRLVLEWADSEVT 99 (107)
T ss_dssp -SCBCEEEECCCCCC
T ss_pred -CCEEEEEeCCCCCC
Confidence 89999999987643
No 207
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=120.80 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=64.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e-----CCcceEEEEeCCHHHHHHHHHHhcCc----eeCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K-----GEKPMGFALFSTAQLAVAAKDALQEM----IFDAE 115 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~-----~~kg~aFV~F~~~~~A~~A~~~l~g~----~~~~~ 115 (328)
+..-.||||+|||+++|+++|+++|+.|+.....-+++ + ..||||||+|.+.++|.+|++.|||. .++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~-- 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID-- 83 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET--
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC--
Confidence 34567999999999999999999999993322111333 1 23699999999999999999999997 467
Q ss_pred CCCeEEEEEccc
Q 020297 116 TKSVLHTEMAKK 127 (328)
Q Consensus 116 ~gr~l~v~~a~~ 127 (328)
||+|+|+||++
T Consensus 84 -Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 -GKTIGVDFAKS 94 (95)
T ss_dssp -TEEEEEEECCC
T ss_pred -CEEEEEEEccC
Confidence 99999999975
No 208
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=1.6e-16 Score=123.45 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e--C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~--~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..+ . + .+|||||+|.+.++|++|++.|||..|. |+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 95 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MK 95 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 467899999999999999999999999 655222 1 1 2599999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|+|++.+..
T Consensus 96 ~l~V~~a~~~~~ 107 (115)
T 2cpz_A 96 RLKVQLKRSKND 107 (115)
T ss_dssp ECEEECCCCSCC
T ss_pred EEEEEEcCCCCc
Confidence 999999976643
No 209
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=5.7e-17 Score=141.45 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..++|||+||++++|+++|+++|++|| .|++|+|+.++. +|||||+|.+.++|.+||+.|||..|.| +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT---BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC---EEeE
Confidence 467999999999999999999999999 999999987643 8899999999999999999999999999 9999
Q ss_pred EEeecC
Q 020297 296 IQYSKN 301 (328)
Q Consensus 296 V~~ak~ 301 (328)
|.|++.
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999753
No 210
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=119.90 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEE
Confidence 3568999999999999999999999999 7773332 23699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|+|++.+.
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99997653
No 211
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=6.6e-17 Score=129.34 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..++|||+|||+++|+++|+++|++||. |.+|+|+.+.. +|||||+|.+.++|++||+ |||..|.| +.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---r~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH---RYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---SEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---EEEE
Confidence 4689999999999999999999999999 89999987544 7899999999999999999 99999999 9999
Q ss_pred EEeecC
Q 020297 296 IQYSKN 301 (328)
Q Consensus 296 V~~ak~ 301 (328)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999753
No 212
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-17 Score=119.97 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCee--CCCCCceeEEEee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI--PSSGSVGMRIQYS 299 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i--~g~~~~~l~V~~a 299 (328)
+.++|||+|||.++++++|+++|++||.|.+++|+.+ .+|||||+|.+.++|++ |+|..+ .+ +.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g---~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG---ISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT---EEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC---EEEEEEec
Confidence 4689999999999999999999999999999999853 68999999999999975 455544 67 89999999
Q ss_pred cCCCC
Q 020297 300 KNPFG 304 (328)
Q Consensus 300 k~~~~ 304 (328)
+++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87743
No 213
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=119.24 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCcCCHHHHH----HHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~----~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.+.++|||+|||+++++++|+ ++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+. |
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---g 79 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG---S 79 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 357899999999999999999 999999 8885543 12899999999999999999999999998 9
Q ss_pred CeEEEEEcccc
Q 020297 118 SVLHTEMAKKN 128 (328)
Q Consensus 118 r~l~v~~a~~~ 128 (328)
+.|+|+|++..
T Consensus 80 r~l~V~~a~~~ 90 (96)
T 2dgx_A 80 KKILVSLATGA 90 (96)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEEcCCC
Confidence 99999999765
No 214
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.6e-17 Score=122.49 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCCcceEEEcCCCC-cCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 46 ~~~~~~LfV~nLp~-~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
.++.++|||+|||. ++++++|+++|+.| |.|..++-.||||||+|.+.++|.+|++.|+|..+. |+.|+|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF---GKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB---TTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC---CcEEEEEE
Confidence 35689999999998 99999999999999 877665545899999999999999999999999998 89999999
Q ss_pred cccccc
Q 020297 125 AKKNLF 130 (328)
Q Consensus 125 a~~~~~ 130 (328)
++.+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976543
No 215
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=118.20 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GR 75 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---Cc
Confidence 457899999999999999999999999 7774442 13599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+|++.+.
T Consensus 76 ~l~V~~a~~~~ 86 (95)
T 2dnz_A 76 PMRVGHVTERL 86 (95)
T ss_dssp CCEEEESSCCC
T ss_pred EEEEEEccccc
Confidence 99999997664
No 216
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=1e-16 Score=127.27 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..++.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--- 114 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--- 114 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34668999999999999999999999999 7774442 23699999999999999999999999998
Q ss_pred CCeEEEEEcccc
Q 020297 117 KSVLHTEMAKKN 128 (328)
Q Consensus 117 gr~l~v~~a~~~ 128 (328)
|+.|+|+|++.+
T Consensus 115 g~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 GRRIRVDFSITK 126 (129)
T ss_dssp SSCCEESCCSSS
T ss_pred CEEEEEEEecCC
Confidence 899999999765
No 217
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=2.1e-16 Score=118.73 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 73 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRF 73 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 46899999999999999999999999 8875542 12699999999999999999999999998 899
Q ss_pred EEEEEcccccc
Q 020297 120 LHTEMAKKNLF 130 (328)
Q Consensus 120 l~v~~a~~~~~ 130 (328)
|+|+|++.+..
T Consensus 74 l~V~~a~~~~~ 84 (96)
T 2x1f_A 74 LKCGYSSNSDI 84 (96)
T ss_dssp CEEEECSCSSG
T ss_pred EEEEEcCCCCC
Confidence 99999987643
No 218
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.7e-16 Score=122.14 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|++|++.|+|..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 84 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---G 84 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4568999999999999999999999999 7774432 1 2599999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|.|++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 85 RQIRTNWATRKPP 97 (115)
T ss_dssp EECEEEESSCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999986643
No 219
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=117.59 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 76 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GR 76 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 457899999999999999999999999 7774432 1 2599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 9999999754
No 220
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=118.39 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 86 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---EN 86 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 3567899999999999999999999999 7774432 12599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|.|++.+
T Consensus 87 ~l~v~~a~~~ 96 (100)
T 2do4_A 87 IIKVAISNSG 96 (100)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999999765
No 221
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=121.22 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
...++|||+|||.++++++|+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.|+|..|. |+.|+|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE---GHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEEe
Confidence 457899999999999999999999999 888554 445899999999999999999999999998 89999999
Q ss_pred cccccc
Q 020297 125 AKKNLF 130 (328)
Q Consensus 125 a~~~~~ 130 (328)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987644
No 222
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-16 Score=118.15 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++ |+|..|. |
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g 78 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---G 78 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---C
Confidence 3568999999999999999999999999 7775442 136999999999999999999 9999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|.|++.+..
T Consensus 79 ~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 79 KKVEVKRAEPRDS 91 (99)
T ss_dssp CBCEEEECCCCCC
T ss_pred eEEEEEECCCCcc
Confidence 9999999986643
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=119.64 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeC-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..+.++|||+|||.++++++|+++|+.| +.+..+.. .+|||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKV 84 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEE
Confidence 3568999999999999999999999988 55544321 2599999999999999999999999998 8999
Q ss_pred EEEEcccccc
Q 020297 121 HTEMAKKNLF 130 (328)
Q Consensus 121 ~v~~a~~~~~ 130 (328)
+|+|++.+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999987643
No 224
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=120.32 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..|. |
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 82 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---G 82 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---T
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3568999999999999999999999999 8875542 12599999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|+|.|++...
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 999999997653
No 225
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=121.78 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|+|..+. |+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~ 96 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GR 96 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 357899999999999999999999999 7774432 12599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+|++.+.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999997663
No 226
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=120.22 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 81 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---G 81 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---S
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 6663331 13699999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|+|++.+..
T Consensus 82 ~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 82 RQIRVDQAGKSSD 94 (102)
T ss_dssp CCCEEEEEECCCC
T ss_pred eEEEEEECCCCCC
Confidence 9999999976644
No 227
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=120.04 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCc-ceEEEEeCCHHHHHHHHHHhcCceeCCCCC-----CeE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETK-----SVL 120 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~k-g~aFV~F~~~~~A~~A~~~l~g~~~~~~~g-----r~l 120 (328)
...++|||+|||+++|+++|+++|+.| |.|..++-.+ |||||+|.+.++|.+||+.|||..|. | +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEE---CTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCcc---CCcCcceEE
Confidence 357899999999999999999999999 8886654222 99999999999999999999999998 8 999
Q ss_pred EEEEccccc
Q 020297 121 HTEMAKKNL 129 (328)
Q Consensus 121 ~v~~a~~~~ 129 (328)
+|+|++.+.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 228
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2e-16 Score=136.53 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=72.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+.++|||+|||+++|+++|+++|++||.|++|+|+++.. +|||||+|.+.++|.+||+.|||..+.| +.|+|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG---KPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC---cccccc
Confidence 468999999999999999999999999999999987543 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98755
No 229
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.6e-16 Score=119.11 Aligned_cols=78 Identities=24% Similarity=0.251 Sum_probs=68.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhc------Cce
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQ------EMI 111 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~------g~~ 111 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|| |..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3568899999999999999999999999 8775542 136999999999999999999999 999
Q ss_pred eCCCCCCeEEEEEcccccc
Q 020297 112 FDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 112 ~~~~~gr~l~v~~a~~~~~ 130 (328)
|. |+.|+|.|++.+..
T Consensus 88 ~~---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LD---GRQLKVDLAVTRDE 103 (111)
T ss_dssp SS---SCEEEEECCCCCCC
T ss_pred Ec---CEEEEEEECCCCcc
Confidence 98 89999999987644
No 230
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=123.64 Aligned_cols=75 Identities=19% Similarity=0.082 Sum_probs=68.2
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
..++|||+|||+++++++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEEEC
Confidence 47899999999999999999999999 8886654 46799999999999999999999999998 899999999
Q ss_pred cccc
Q 020297 126 KKNL 129 (328)
Q Consensus 126 ~~~~ 129 (328)
+...
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=119.83 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 82 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GR 82 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---Cc
Confidence 568999999999999999999999999 6663331 23699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|.|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2cqb_A 83 TIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999976643
No 232
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-16 Score=132.88 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.+.++|||+||+.++++++|+++|++||.|+.|+|..+. .+|||||+|.+.++|++||+.|||..|.| +.|+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---r~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS---SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 457899999999999999999999999999999998654 37999999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 233
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=4.2e-16 Score=119.03 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..+....++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 458999999999999999999999999 7774442 1 2699999999999999999999999997211199
Q ss_pred EEEEEcccccc
Q 020297 120 LHTEMAKKNLF 130 (328)
Q Consensus 120 l~v~~a~~~~~ 130 (328)
|+|.|++.+..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999987643
No 234
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-16 Score=116.44 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
..+.++|||+|||.++++++|+++|+.| |.|..+ ...||||||+|.+.++|++|++.|||..+. ..|+.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG-GPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS-SSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC-CCCcEEEEE
Confidence 3467899999999999999999999999 888554 345899999999999999999999999985 125999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
|++.+
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99765
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.5e-16 Score=122.74 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=64.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-cEEE--e--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVN--Y--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-~i~~--~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
...+|||+|||+++++++|+++|+.| | .|.. + +..+|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 46799999999999999999999999 6 5532 2 245799999999999999999999999998 999999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998644
No 236
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.7e-16 Score=114.74 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=64.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
+.+|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 73 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPL 73 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEE
Confidence 3589999999999999999999999 7774432 12699999999999999999999999998 8999
Q ss_pred EEEEcccc
Q 020297 121 HTEMAKKN 128 (328)
Q Consensus 121 ~v~~a~~~ 128 (328)
+|+|++.+
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999765
No 237
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=119.83 Aligned_cols=77 Identities=29% Similarity=0.354 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 84 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---H 84 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---C
Confidence 4568999999999999999999999999 7774431 12599999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|+|.|++.+.
T Consensus 85 ~~l~v~~a~~~~ 96 (103)
T 2cq0_A 85 LILNVEWAKPST 96 (103)
T ss_dssp EECEEEESSCCC
T ss_pred cEEEEEECCCCC
Confidence 999999997654
No 238
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=118.51 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=66.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 85 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GR 85 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CC
Confidence 3568999999999999999999999999 7774442 12599999999999999999999999998 89
Q ss_pred eEEEEEccc
Q 020297 119 VLHTEMAKK 127 (328)
Q Consensus 119 ~l~v~~a~~ 127 (328)
.|+|+|+++
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999864
No 239
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=114.79 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=66.2
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------C-CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~-~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQ 75 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---Ce
Confidence 46899999999999999999999999 8875542 1 5699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|+...
T Consensus 76 ~l~v~~a~~~ 85 (88)
T 4a8x_A 76 EITATAVLAP 85 (88)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998654
No 240
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-17 Score=123.97 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
...+|||+|||+++|+++|+++|+.||. |..|+|+.+.. +|||||+|.+.++|++||+ |||..|+| +.|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---r~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---RYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS---SCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC---eEEE
Confidence 4689999999999999999999999887 89999986543 8899999999999999999 99999999 9999
Q ss_pred EEeecCC
Q 020297 296 IQYSKNP 302 (328)
Q Consensus 296 V~~ak~~ 302 (328)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 241
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=3.9e-16 Score=119.45 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+....|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3568999999999999999999999999 7664432 136999999999999999999999998732228
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|.|++.+..
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999976543
No 242
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=118.19 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCccc-EEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~-i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
.+.++|||+|||.++++++|+++|+.|+.+... .+... ..+|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 468999999999999999999999999332222 11111 13699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|+|++.+.
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 99997654
No 243
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=4.7e-16 Score=116.94 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHH----HHHHhCCCCcccEEEeeC-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYKG-----EKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~----~~f~~~~~~~g~i~~~~~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..+.++|||+|||.++++++|+ ++|+.| |.|..++- .+|||||+|.+.++|.+|++.|||..+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 3568999999999999999999 999999 88866642 3699999999999999999999999998
Q ss_pred CCeEEEEEcccccc
Q 020297 117 KSVLHTEMAKKNLF 130 (328)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (328)
|+.|+|+|++.+..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 89999999987654
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=121.31 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=67.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
..+|||+|||+++|+++|+++|+.| .|..|+|+.+.. +|||||+|.+.++|++|| .|||..|+| +.|+|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g---r~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ---RYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT---EEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEEEC
Confidence 4799999999999999999999999 899999986543 899999999999999999 699999999 99999887
Q ss_pred cC
Q 020297 300 KN 301 (328)
Q Consensus 300 k~ 301 (328)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 245
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=116.98 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCC-CcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcC-ceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPG-YEASQVNYKGEKPMGFALFSTAQLAVAAKDALQE-MIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~-~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g-~~~~~~~gr~l~v~~ 124 (328)
...++|||+|||.++|+++|+++|+.|+. +...++ ..+|||||+|.+.++|.+|++.||| ..+. |+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELH---GKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEET---TEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeEC---CEEEEEEE
Confidence 45789999999999999999999999933 222222 2469999999999999999999999 9998 89999999
Q ss_pred ccccc
Q 020297 125 AKKNL 129 (328)
Q Consensus 125 a~~~~ 129 (328)
++.+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97653
No 246
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=1.4e-16 Score=138.75 Aligned_cols=76 Identities=14% Similarity=0.377 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCCCC---------CHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCee------
Q 020297 222 PCNTLFIGNLGESI---------NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI------ 286 (328)
Q Consensus 222 ~~~~LfV~NL~~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i------ 286 (328)
.+++|||+||+..+ ++++|+.+|++||.|++|+|+. ++|||||+|.+.++|+.|+++|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 47999999999998 7999999999999999999984 589999999999999999999999999
Q ss_pred ------CCCCCceeEEEeecCC
Q 020297 287 ------PSSGSVGMRIQYSKNP 302 (328)
Q Consensus 287 ------~g~~~~~l~V~~ak~~ 302 (328)
.| +.|.|.||+..
T Consensus 211 e~~~~~~g---r~L~V~wA~~~ 229 (240)
T 3u1l_A 211 EWDDRREG---TGLLVKWANED 229 (240)
T ss_dssp TGGGGGGS---CCCEEEECC--
T ss_pred cccccCCC---CEEEEEEccCC
Confidence 67 89999999854
No 247
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=4.9e-17 Score=116.36 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=65.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 225 ~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+|||+|||.++++++|+++|++||.|..+++..+.. +|||||+|.+.++|.+|++ ++|..|.| +.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g---~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL---SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT---BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC---EEEEEEEC
Confidence 599999999999999999999999999999976532 8999999999999999998 59999999 99999885
No 248
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=118.34 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----C------CcceEEEEeCCHHHHHHHHHHhcCceeCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----G------EKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~------~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~ 115 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD-- 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 468899999999999999999999999 7663331 1 2589999999999999999999999998
Q ss_pred CCCeEEEEEcccccc
Q 020297 116 TKSVLHTEMAKKNLF 130 (328)
Q Consensus 116 ~gr~l~v~~a~~~~~ 130 (328)
|+.|+|.|++.+..
T Consensus 77 -g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 77 -GHKLEVRISERATK 90 (98)
T ss_dssp -TEECEEECSSCSSC
T ss_pred -CeEEEEEEccCCCC
Confidence 89999999976543
No 249
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=9.3e-17 Score=122.07 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+||+.++++++|+++|++||.|.+++|+.+.. +|||||+|.+.++|++|++ ||..|.| +.|+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g---~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG---KKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC---EEEEEEE
Confidence 368999999999999999999999999999999987543 7999999999999999999 9999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+..+
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 9866
No 250
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=3.2e-16 Score=116.66 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 468899999999999999999999999 7774432 1 3699999999999999999999999998 8999
Q ss_pred EEEEccccc
Q 020297 121 HTEMAKKNL 129 (328)
Q Consensus 121 ~v~~a~~~~ 129 (328)
+|.|++...
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999997653
No 251
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-15 Score=117.68 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCCeEEEeCCCCCCC-----------HHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 221 PPCNTLFIGNLGESIN-----------EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
.++++|+|+||-...+ +++|+++|++||.|..|.|.....+|||||+|.+.++|++|++.|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG- 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 3578999999954432 5899999999999999987644458999999999999999999999999999
Q ss_pred CCceeEEEeecCC
Q 020297 290 GSVGMRIQYSKNP 302 (328)
Q Consensus 290 ~~~~l~V~~ak~~ 302 (328)
+.|+|.|++.+
T Consensus 92 --r~l~v~~a~~~ 102 (112)
T 2dit_A 92 --RQITAQAWDGT 102 (112)
T ss_dssp --EECEEEECCSC
T ss_pred --cEEEEEEeCCC
Confidence 99999998765
No 252
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.6e-16 Score=115.88 Aligned_cols=71 Identities=21% Similarity=0.465 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
+.++|||+|||.++++++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|+ .|||..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g-- 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC--
Confidence 36899999999999999999999999 8 899999974 4899999999999999999 999999999
Q ss_pred CceeEEEe
Q 020297 291 SVGMRIQY 298 (328)
Q Consensus 291 ~~~l~V~~ 298 (328)
+.|+|+.
T Consensus 80 -~~l~V~r 86 (87)
T 2hzc_A 80 -QSLKIRR 86 (87)
T ss_dssp -EECEEEC
T ss_pred -eEEEEeC
Confidence 9999974
No 253
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=118.49 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|++ .|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--- 84 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--- 84 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---
Confidence 34568999999999999999999999999 8775542 1359999999999999999999998 787
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
|+.|+|+|++.+.
T Consensus 85 g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 85 GRKANVNLAYLGA 97 (116)
T ss_dssp TEECEEEESTTTC
T ss_pred CEEEEEEEcccCC
Confidence 8999999997653
No 254
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=114.75 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
..+.++|||+|| ++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEET---TEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 346789999996 89999999999999 888554 466899999999999999999999999998 8999999
Q ss_pred Ecccccc
Q 020297 124 MAKKNLF 130 (328)
Q Consensus 124 ~a~~~~~ 130 (328)
|++.+..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9976543
No 255
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=117.70 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=63.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc--------cEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--------SQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g--------~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~ 114 (328)
.+.++|||+|||.++++++|+++|+.|+.+.. ..+... ..+|||||+|.+.++|.+|++.|||..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 35789999999999999999999999943332 111111 12599999999999999999999999998
Q ss_pred CCCCeEEEEEcc
Q 020297 115 ETKSVLHTEMAK 126 (328)
Q Consensus 115 ~~gr~l~v~~a~ 126 (328)
|+.|+|+||+
T Consensus 90 --g~~l~V~~A~ 99 (99)
T 2la6_A 90 --GNPIKVSFAT 99 (99)
T ss_dssp --SSBCEEEECC
T ss_pred --CcEEEEEecC
Confidence 8999999984
No 256
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=6.4e-16 Score=127.54 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
++++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN---KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC---cEEEEE
Confidence 368999999999999999999999999999999987643 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|++.+
T Consensus 79 ~~~~~ 83 (168)
T 1b7f_A 79 YARPG 83 (168)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99866
No 257
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=115.36 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=66.0
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
.+..++|||+|||.++++++|+++|+.|+.+....+.. + ..+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 34578999999999999999999999994443222222 2 13699999999999999999999999998 89999
Q ss_pred EEEccc
Q 020297 122 TEMAKK 127 (328)
Q Consensus 122 v~~a~~ 127 (328)
|+|++.
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999864
No 258
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=6.7e-16 Score=119.04 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 47 ~~~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
...++|||+|||.+ +++++|+++|+.| |.|..++-.+|||||+|.+.++|.+|++.|+|..|. |+.|+|+|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLA---GQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEET---TEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEC
Confidence 45789999999999 9999999999999 777554446899999999999999999999999998 899999999
Q ss_pred ccc
Q 020297 126 KKN 128 (328)
Q Consensus 126 ~~~ 128 (328)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=118.77 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 93 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQ 93 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---Cc
Confidence 457899999999999999999999999 7774442 12599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|++.+
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 9999999764
No 260
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=5.1e-16 Score=119.58 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=63.0
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++|+++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.+ +..+. |
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~---g 93 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD---S 93 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---C
Confidence 3568999999999999999999999999 7774442 13699999999999999999976 58888 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|+|.|+..+.
T Consensus 94 ~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 KTIDPKVAFPRR 105 (109)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEEccCCC
Confidence 999999997653
No 261
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=4.8e-16 Score=122.58 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---eCCcce-EEEEeCCHHHHHHHHHHhcCceeCCCCC--CeEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPM-GFALFSTAQLAVAAKDALQEMIFDAETK--SVLH 121 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~~~kg~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--r~l~ 121 (328)
...+|||+||++.+|+++|+++|++| |.|.++ +..+|+ |||+|.+.++|.+|++.|||..|+ | ++|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~---g~~~~Lr 99 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY---NACCTLR 99 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE---TTEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec---CCCcEEE
Confidence 45678899999999999999999999 887554 334677 999999999999999999999997 5 8999
Q ss_pred EEEcccccc
Q 020297 122 TEMAKKNLF 130 (328)
Q Consensus 122 v~~a~~~~~ 130 (328)
|+|++.+..
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999987653
No 262
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=7.2e-16 Score=126.89 Aligned_cols=77 Identities=19% Similarity=0.404 Sum_probs=72.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++++++|+++|+.||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT---KTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC---ceEEEEe
Confidence 58999999999999999999999999999999987652 6899999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
++++
T Consensus 79 ~~~~ 82 (167)
T 1fxl_A 79 ARPS 82 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 263
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=120.45 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=66.7
Q ss_pred CCCcceEEE--cCCCCcCCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCcee-CC-CCCCe
Q 020297 46 HDEVRTIFI--TGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIF-DA-ETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV--~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~-~~-~~gr~ 119 (328)
.+++++||| +||++++++++|+++|++| |.|..+ ...||||||+|.+.++|++|++.|||..+ .. ..|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 356889999 7799999999999999999 877544 35689999999999999999999999988 21 12799
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|.|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998643
No 264
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=119.18 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEE----------Ee-e-----CCcceEEEEeCCHHHHHHHHHHhcC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV----------NY-K-----GEKPMGFALFSTAQLAVAAKDALQE 109 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~----------~~-~-----~~kg~aFV~F~~~~~A~~A~~~l~g 109 (328)
..+.++|||+|||.++|+++|+++|+.| |.|. .+ . ..+|||||+|.+.++|.+|++.|||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 3568999999999999999999999999 5443 22 1 1269999999999999999999999
Q ss_pred ceeCCCCCCeEEEEEcccccc
Q 020297 110 MIFDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 110 ~~~~~~~gr~l~v~~a~~~~~ 130 (328)
..|. |+.|+|.|++.+..
T Consensus 88 ~~~~---g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQ---GSKLKVSLARKKPP 105 (113)
T ss_dssp CEET---TEECEEECSSCCCC
T ss_pred CccC---CCEEEEEECCCCCC
Confidence 9998 89999999976543
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=120.98 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|+ .|||..|. |+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~ 94 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GV 94 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---Ce
Confidence 457999999999999999999999999 8775442 23699999999999999999 89999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|.|++.+.
T Consensus 95 ~l~V~~a~~~~ 105 (114)
T 2cq4_A 95 PIIVQASQAEK 105 (114)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEEecCCCc
Confidence 99999997654
No 266
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=116.12 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------C-CcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~-~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.+.++|||+|||.++++++|+++|+.| | |..++ + .+|||||+|.+.++|.+|+ .|||..|. |
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g 83 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---N 83 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---T
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---C
Confidence 457899999999999999999999999 7 64442 1 2699999999999999999 89999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|+|++.+..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999977643
No 267
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=119.50 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe--e--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~--~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.+.++|||+|||.++|+++|+++|+.|+.+...++.+ . ..+|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY---GKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---SCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEE
Confidence 4678999999999999999999999993322211333 2 34699999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020297 123 EMAKKNLF 130 (328)
Q Consensus 123 ~~a~~~~~ 130 (328)
+|++.+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987643
No 268
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=1.1e-15 Score=117.81 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 96 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQ 96 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---Cc
Confidence 467899999999999999999999999 8885542 12599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|.|++.+
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 9999999765
No 269
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=117.49 Aligned_cols=79 Identities=8% Similarity=0.040 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCc-ccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe--
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYE-ASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV-- 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~-g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~-- 119 (328)
.+.++|||+|||.++++++|+++|+.|+.+. ...+... ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP---GATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES---SCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC---CCCcc
Confidence 5689999999999999999999999993332 1111111 12599999999999999999999999998 788
Q ss_pred --EEEEEcccc
Q 020297 120 --LHTEMAKKN 128 (328)
Q Consensus 120 --l~v~~a~~~ 128 (328)
|+|+|++..
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999999754
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=128.16 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
..++|||+|||+++|+++|+++|++|| |++|+|+.+.. +|||||+|.+.++|++|| .|||..|.+ +.|+|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g---R~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH---RYIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS---CCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC---EEEEEEE
Confidence 367999999999999999999999999 77999986544 889999999999999999 799999999 9999999
Q ss_pred ecCCCC
Q 020297 299 SKNPFG 304 (328)
Q Consensus 299 ak~~~~ 304 (328)
+..+..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887643
No 271
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2.9e-16 Score=118.99 Aligned_cols=76 Identities=18% Similarity=0.129 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCC------cCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 47 DEVRTIFITGLPD------DVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 47 ~~~~~LfV~nLp~------~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
..+++|||+|||. ++++++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 4578999999999 99999999999999 8885542 1369999999999999999999999999
Q ss_pred CCCCC-CeEEEEEccccc
Q 020297 113 DAETK-SVLHTEMAKKNL 129 (328)
Q Consensus 113 ~~~~g-r~l~v~~a~~~~ 129 (328)
. | +.|+|.|+..+.
T Consensus 80 ~---g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 80 D---LKHRLFLYTMKDVE 94 (100)
T ss_dssp S---SSCBCEEEESHHHH
T ss_pred C---CCeEEEEEECchhh
Confidence 8 8 999999997643
No 272
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=7.4e-16 Score=118.06 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 98 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GR 98 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---Cc
Confidence 3568999999999999999999999999 7774432 12699999999999999999999999998 89
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
.|+|+|++
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999985
No 273
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=116.10 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
..+.++|||+|||.++++++|+++|+.| ++....+... ..+|||||+|.+.++|.+|+ .|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---CeEEE
Confidence 3568999999999999999999999999 2211112111 12599999999999999999 89999998 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|+|++.+.
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99997654
No 274
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=119.29 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=62.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----C-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
...++|||+|||.++++++|+++|+.| | |..++ . .+|||||+|.+.++|.+|+ .|+|..|. |
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g 87 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---N 87 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---C
Confidence 458999999999999999999999999 7 64442 1 2699999999999999999 89999998 8
Q ss_pred CeEEEEEcccc
Q 020297 118 SVLHTEMAKKN 128 (328)
Q Consensus 118 r~l~v~~a~~~ 128 (328)
+.|+|+|++.+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999999765
No 275
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.4e-16 Score=113.89 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=66.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEccc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~ 127 (328)
..++|||+|||.++++++|+++|+.| .+....+ ...||||||+|.+.++|.+|++.|||..+. |+.|+|+|+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--DRNKRTAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--EGGGTEEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--eCCCcEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEEcCC
Confidence 46899999999999999999999999 5444333 356799999999999999999999999998 89999999966
Q ss_pred cc
Q 020297 128 NL 129 (328)
Q Consensus 128 ~~ 129 (328)
+.
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 276
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=119.81 Aligned_cols=77 Identities=12% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHH---HHHHhCCCCcccEEEee-----------CCcceEEEEeCCHHHHHHHHHHhcCce
Q 020297 46 HDEVRTIFITGLPDDVKERELQ---NLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMI 111 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~---~~f~~~~~~~g~i~~~~-----------~~kg~aFV~F~~~~~A~~A~~~l~g~~ 111 (328)
....++|||+|||+++++++|+ ++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 3457899999999999999999 999999 7774442 123899999999999999999999999
Q ss_pred eCCCCCCeEEEEEccccc
Q 020297 112 FDAETKSVLHTEMAKKNL 129 (328)
Q Consensus 112 ~~~~~gr~l~v~~a~~~~ 129 (328)
|. |+.|+|+|++.+.
T Consensus 88 ~~---gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VD---GRTLKASLGTTKY 102 (111)
T ss_dssp ET---TEEEEEESCCCCS
T ss_pred EC---CEEEEEEeccccc
Confidence 98 9999999997764
No 277
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=118.84 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--ee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.++.++|||+|||.++++++|+++|+.| |.|.. +. ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~ 76 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GK 76 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 3567899999999999999999999999 65522 21 13599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+|++...
T Consensus 77 ~l~V~~a~~~~ 87 (116)
T 2fy1_A 77 AIKVEQAKKPS 87 (116)
T ss_dssp BCEEEECCCSS
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 278
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.4e-15 Score=116.23 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCC-----CCCHHHHHHHhccCCCeeEEEEEecC-----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 222 PCNTLFIGNLGE-----SINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 222 ~~~~LfV~NL~~-----~~te~~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
++++|+|+||-. +-++++|+++|++||.|.+|+|.++. .+|||||+|.+.++|.+|++.|||+.+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 578999999973 23789999999999999999998753 38999999999999999999999999999
Q ss_pred ceeEEEeecC
Q 020297 292 VGMRIQYSKN 301 (328)
Q Consensus 292 ~~l~V~~ak~ 301 (328)
|.|+|.|++.
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 279
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.9e-16 Score=125.94 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
++|||+|||.++|+++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN---NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC---CeeEEEEcC
Confidence 5899999999999999999999999999999986553 7899999999999999999999999999 999999997
Q ss_pred CCCC
Q 020297 301 NPFG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
.+..
T Consensus 78 ~~~~ 81 (166)
T 3md3_A 78 QSQQ 81 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 280
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=117.43 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ . .+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 84 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DR 84 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CC
Confidence 3568899999999999999999999999 7774432 1 2599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|++..
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998654
No 281
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=116.85 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..+.++|||+|||.++++++|+++|+.| |.|..+ .. .+|||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 4568999999999999999999999999 777444 22 3699999999999999999999999998 899999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
+|++.+
T Consensus 86 ~~a~~~ 91 (96)
T 1fjc_A 86 YYTGEK 91 (96)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 999765
No 282
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=7.2e-16 Score=134.47 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 221 PPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 221 ~~~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
+++++|||+|||. ++++++|+++|++||.|.+|+|+.+. +|||||+|.+.++|++||+.|||..|.| +.|+|.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS---SBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEe
Confidence 4579999999999 99999999999999999999998754 7999999999999999999999999999 99999999
Q ss_pred cCC
Q 020297 300 KNP 302 (328)
Q Consensus 300 k~~ 302 (328)
+.+
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 865
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=1.3e-15 Score=120.17 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++|+++|+++|+.| |.|..+. . .+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 92 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQ 92 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---Ce
Confidence 457899999999999999999999999 8875542 1 2699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|+|++.+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 284
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=118.41 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHh-CCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCce-eCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRW-LPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMI-FDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~-~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~-~~~~~g 117 (328)
.+.++|||+|||.++|+++|+++|+. | |.|..++ ..+|||||+|.+.++|.+|++.|+|.. +. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---S 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---C
Confidence 46789999999999999999999999 9 7764432 136999999999999999999999999 88 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|+|++.+..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 9999999976543
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=120.81 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=65.5
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 131 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--- 131 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34568999999999999999999999999 8885552 23699999999999999999999999998
Q ss_pred CCeEEEEEc
Q 020297 117 KSVLHTEMA 125 (328)
Q Consensus 117 gr~l~v~~a 125 (328)
|+.|+|+||
T Consensus 132 g~~l~v~~A 140 (140)
T 2ku7_A 132 GRTIRVNLA 140 (140)
T ss_dssp TEEEEEEC-
T ss_pred CEEEEEEeC
Confidence 899999986
No 286
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=8.2e-16 Score=115.14 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=63.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
.+.++|||+|||.++++++|+++|+.|+.+....+.. + ..+|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEE
Confidence 4568999999999999999999999994333222222 1 13599999999999999999999999998 899999
Q ss_pred EEccc
Q 020297 123 EMAKK 127 (328)
Q Consensus 123 ~~a~~ 127 (328)
+++++
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99853
No 287
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.3e-16 Score=117.12 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
....++|||+|||.++|+++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++ ++|..|. |+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr 79 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ET 79 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CE
Confidence 4567999999999999999999999999 8774442 246999999999999999999 9999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|.|++..
T Consensus 80 ~l~V~~~~~~ 89 (103)
T 1s79_A 80 DLLILFKDDY 89 (103)
T ss_dssp TCEEEEHHHH
T ss_pred EEEEEEchHH
Confidence 9999998653
No 288
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=1.6e-16 Score=117.96 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=58.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCC--CCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLP--GYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~--~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.+|||+|||+++|+++|+++|+.|+ .+....+... ..||||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEEEEE
Confidence 5799999999999999999999993 2222212221 23699999999999999999999999998 9999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
++...
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 98754
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=115.36 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.+.++|||+|||.++|+++|+++|+.|+.+...++.- ...||||||+|.+.++|.+|++ |||..|. |+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcEEEEE
Confidence 4578999999999999999999999993333212111 2457999999999999999999 9999998 8999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
|++.+
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 99765
No 290
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=122.59 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=64.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---e---CCcceEEEEeCCHHHHHHHHHHhcCc----eeCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K---GEKPMGFALFSTAQLAVAAKDALQEM----IFDAET 116 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~---~~kg~aFV~F~~~~~A~~A~~~l~g~----~~~~~~ 116 (328)
.+.++|||+|||+++|+++|+++|+.|+.+...-+++ + ..||||||+|.+. +|.+|++.|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 5678999999999999999999999993332210232 1 2369999999999 999999999999 888
Q ss_pred CCeEEEEEcccc
Q 020297 117 KSVLHTEMAKKN 128 (328)
Q Consensus 117 gr~l~v~~a~~~ 128 (328)
|+.|+|+|++.+
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 899999999765
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=111.66 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
...++|||+|||+++++++|+++|+.| .+....+... . .+|||||+|.+.++|.+|++ |||..|. |+.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEEEE
Confidence 467899999999999999999999999 5443333322 1 26999999999999999999 9999998 8999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
+++.+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99765
No 292
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.2e-15 Score=145.14 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=73.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.+.++|||+||+..+|+++|+.+|++||.|+.|+|+.+. .+|||||+|.+.++|.+||..|||..|.| +.|+|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---r~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC---EEEEE
Confidence 346899999999999999999999999999999998653 28999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.|++.+
T Consensus 177 ~~a~~~ 182 (437)
T 3pgw_S 177 DVERGR 182 (437)
T ss_pred EEeCCC
Confidence 999865
No 293
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.8e-15 Score=135.85 Aligned_cols=81 Identities=32% Similarity=0.482 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEEecC-CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 220 NPPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 220 ~~~~~~LfV~NL~~~~te~~L~----~~F~~~G~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
..++++|||+||+.++|+++|+ ++|++||.|++|+|++.. .+|||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---cEE
Confidence 3458999999999999999977 899999999999998533 38999999999999999999999999999 999
Q ss_pred EEEeecCCC
Q 020297 295 RIQYSKNPF 303 (328)
Q Consensus 295 ~V~~ak~~~ 303 (328)
+|.|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997754
No 294
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=2.3e-15 Score=122.62 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 142 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY----GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC---GCRVRV 142 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH----SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3568999999999999999999999999 8885553 34899999999999999999999999998 899999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
+|++.+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999765
No 295
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=116.47 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=67.4
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..++.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++. +|..|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--- 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--- 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---
Confidence 34678999999999999999999999999 7774432 1259999999999999999998 999998
Q ss_pred CCeEEEEEcccccc
Q 020297 117 KSVLHTEMAKKNLF 130 (328)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (328)
|+.|+|.|++.+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 84 GRNIDPKPCTPRGM 97 (105)
T ss_dssp TEEEBCCCSCCSSC
T ss_pred CEEEEEEEccCCCC
Confidence 89999999976643
No 296
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.6e-15 Score=112.01 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=64.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|+ .|||..+. |+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~ 76 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQ 76 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcE
Confidence 46899999999999999999999999 7774431 12699999999999999999 89999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|.+++.+
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999754
No 297
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-16 Score=118.66 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e--C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~--~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...++|||+|||.++++++|+++|+.| |.|..+ . + .+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 78 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GR 78 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---Cc
Confidence 357899999999999999999999999 555222 2 1 2699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|+|++.+..
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999987654
No 298
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=114.97 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCcC------CHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCC
Q 020297 47 DEVRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~------te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~ 114 (328)
...++|||+|||.++ |+++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 347899999999999 789999999999 8885553 23699999999999999999999999998
Q ss_pred CCCC-eEEEEEcccc
Q 020297 115 ETKS-VLHTEMAKKN 128 (328)
Q Consensus 115 ~~gr-~l~v~~a~~~ 128 (328)
|+ .|+|+|+...
T Consensus 88 --g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 --KQHTFRVNLFTDF 100 (105)
T ss_dssp --TTCEEEEECSCCC
T ss_pred --CCceEEEEEcchH
Confidence 88 9999998643
No 299
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=118.23 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=65.7
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..+ . ..+|||||+|.+.++|.+|++. +|..|. |
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g 95 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---G 95 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---T
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---C
Confidence 3457999999999999999999999999 655222 1 1369999999999999999997 999998 8
Q ss_pred CeEEEEEcccccc
Q 020297 118 SVLHTEMAKKNLF 130 (328)
Q Consensus 118 r~l~v~~a~~~~~ 130 (328)
+.|+|.|++.+..
T Consensus 96 ~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 96 RVVEPKRAVAREE 108 (116)
T ss_dssp EEEEEECCSSCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987644
No 300
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=1.3e-15 Score=120.05 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCee--EEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK--QMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~--~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..++|||+|||+++|+++|+++|+.| .|+ .|+|+.+.. +|||||+|.+.++|++||+ ++|..|+| +.|+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g---R~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH---RYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT---BCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC---EEEEE
Confidence 46889999999999999999999999 677 899876543 8999999999999999998 58899999 99999
Q ss_pred EeecC
Q 020297 297 QYSKN 301 (328)
Q Consensus 297 ~~ak~ 301 (328)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 301
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=116.58 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCccc-EEEee---------CCcceEEEEeCCHHHHHHHHHHhc--CceeCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYK---------GEKPMGFALFSTAQLAVAAKDALQ--EMIFDA 114 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~-i~~~~---------~~kg~aFV~F~~~~~A~~A~~~l~--g~~~~~ 114 (328)
.+.++|||+|||.++++++|+++|+.| |. |..+. ..||||||+|.+.++|.+|++.|+ +..+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~- 80 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW- 80 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT-
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec-
Confidence 457899999999999999999999999 76 64432 246999999999999999999996 58888
Q ss_pred CCCCeEEEEEccccc
Q 020297 115 ETKSVLHTEMAKKNL 129 (328)
Q Consensus 115 ~~gr~l~v~~a~~~~ 129 (328)
|+.|+|+|++.+.
T Consensus 81 --g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 --GHQIAVDWAEPEI 93 (109)
T ss_dssp --TBCCEEEESCSSC
T ss_pred --CCeEEEEEcCCCC
Confidence 8999999997654
No 302
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-14 Score=113.89 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=64.0
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--CCcce-EEEEeCCHHHHHHHHHHhcCceeCCCCC--CeEEEE
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPM-GFALFSTAQLAVAAKDALQEMIFDAETK--SVLHTE 123 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--r~l~v~ 123 (328)
...|||+||++.+|+++|+++|+.| |.|..++ ..+|| |||+|.+.++|.+|++.|||..|+ | +.|+|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~---g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIY---AGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCB---TTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEec---CCCeEEEEE
Confidence 3446899999999999999999999 8774442 22486 999999999999999999999997 5 699999
Q ss_pred Ecccccc
Q 020297 124 MAKKNLF 130 (328)
Q Consensus 124 ~a~~~~~ 130 (328)
|++.+..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9987753
No 303
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=8.5e-16 Score=122.96 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=67.6
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~--- 115 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--- 115 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGG----SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 34568899999999999999999999999 6663331 23699999999999999999999999998
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
|+.|+|+|++.+.
T Consensus 116 g~~l~V~~a~~~~ 128 (135)
T 2lea_A 116 GRELRVQMARYGR 128 (135)
T ss_dssp SSCCEEEECCCCC
T ss_pred CEEEEEEECCCCC
Confidence 8999999997653
No 304
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.6e-15 Score=118.23 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--ee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|.. +. ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 104 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GR 104 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---Cc
Confidence 3568899999999999999999999999 65522 21 14699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|+...
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 9999999764
No 305
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=9.6e-16 Score=120.67 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=64.5
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|+ .|||..|. |+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~ 106 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRT 106 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeE
Confidence 47899999999999999999999999 7764331 23699999999999999999 79999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|+|++..
T Consensus 107 l~V~~a~~~ 115 (124)
T 2jwn_A 107 IKVLPKRTN 115 (124)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 999999754
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.2e-15 Score=111.49 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
...++|||+|||+++++++|+++|+.| |.|..++ ...|.|||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE---NFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS---SCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 457899999999999999999999999 8775542 22366999999999999999999999998 89999
Q ss_pred EEEcccc
Q 020297 122 TEMAKKN 128 (328)
Q Consensus 122 v~~a~~~ 128 (328)
|+|++.+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999765
No 307
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-16 Score=114.91 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQ 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eE
Confidence 468899999999999999999999999 7774442 12699999999999999999999999998 88
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
.|++.|++
T Consensus 76 ~~~~~~~~ 83 (85)
T 1x4e_A 76 MAKQSGPS 83 (85)
T ss_dssp SCCSSCCC
T ss_pred EEeecCCC
Confidence 88887654
No 308
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-15 Score=111.65 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 45 ~~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
...+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++ ++..|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~--- 81 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID--- 81 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---
Confidence 34568899999999999999999999999 7774431 125999999999999999998 477887
Q ss_pred CCeEEEEEcccccc
Q 020297 117 KSVLHTEMAKKNLF 130 (328)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (328)
|+.|+|.|++.+..
T Consensus 82 g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 82 GRWCDCKLPNSKQS 95 (103)
T ss_dssp TEEEEEECCCTTCC
T ss_pred CeEEEEEecCCCCc
Confidence 89999999987644
No 309
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=116.48 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..+.++|||+|||+++|+++|+++|+.|+.+... +.+. ..||||||+|.+.++|.+||+. ||..|. |+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENA-VHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT-EEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe-EEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEE
Confidence 3567899999999999999999999999333111 3331 2469999999999999999996 999998 8999
Q ss_pred EEEEccccc
Q 020297 121 HTEMAKKNL 129 (328)
Q Consensus 121 ~v~~a~~~~ 129 (328)
+|.|+..+.
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997654
No 310
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3.1e-15 Score=110.09 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=62.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++ +++..+. |
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g 79 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD---G 79 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC---C
Confidence 4568999999999999999999999999 7774432 125999999999999999997 6888888 8
Q ss_pred CeEEEEEc
Q 020297 118 SVLHTEMA 125 (328)
Q Consensus 118 r~l~v~~a 125 (328)
+.|+|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999876
No 311
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=120.38 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCe----eEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCcee
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i----~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l 294 (328)
...+|||+|||+++|+++|+++|++||.| ..|+|+.+.. +|||||+|.+.++|++||+. ||..|.+ +.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g---R~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK---RYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS---CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC---eEE
Confidence 36899999999999999999999999975 6888876533 79999999999999999996 9999999 899
Q ss_pred EEEeecC
Q 020297 295 RIQYSKN 301 (328)
Q Consensus 295 ~V~~ak~ 301 (328)
+|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 312
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=117.42 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e-C--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~-~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
..+.++|||+|||+++|+++|+++|+.|+.+...++.+ + + .+|||||+|.+.++|.+||+ |||..|. |+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEE
Confidence 34578999999999999999999999994443322222 2 1 26999999999999999999 9999998 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 313
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=129.18 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCeEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020297 223 CNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (328)
Q Consensus 223 ~~~LfV~NL~~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak~ 301 (328)
+++|||+|||. ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS---CCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC---eEEEEEEecC
Confidence 58999999999 99999999999999999999998644 7999999999999999999999999999 9999999986
Q ss_pred C
Q 020297 302 P 302 (328)
Q Consensus 302 ~ 302 (328)
+
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 314
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.5e-15 Score=113.18 Aligned_cols=79 Identities=16% Similarity=0.337 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCC----
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDA---- 114 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~---- 114 (328)
..+.++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3567899999999999999999999999 7774432 125999999999999999999999999831
Q ss_pred -CCCCeEEEEEcccc
Q 020297 115 -ETKSVLHTEMAKKN 128 (328)
Q Consensus 115 -~~gr~l~v~~a~~~ 128 (328)
..+++|+|.|++..
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 12789999999754
No 315
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=4.2e-15 Score=121.84 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 109 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DR 109 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 468999999999999999999999999 7774442 12599999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|+|++...
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 316
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=112.47 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE-ee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-YK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~-~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
....++|||+|||+++|+++|+++|+.| |.|.. ++ ..+|||||+|.+.++|.+|++. ++..+. |
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---g 83 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---H 83 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---C
Confidence 3567899999999999999999999999 76643 21 2369999999999999999996 999998 8
Q ss_pred CeEEEEEcccc
Q 020297 118 SVLHTEMAKKN 128 (328)
Q Consensus 118 r~l~v~~a~~~ 128 (328)
|.|+|.++..+
T Consensus 84 r~i~v~~~~~~ 94 (104)
T 1wg5_A 84 RYIEIFKSSRA 94 (104)
T ss_dssp SCCEEEEECTT
T ss_pred cEEEEEECCHH
Confidence 99999988644
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.4e-15 Score=116.85 Aligned_cols=75 Identities=13% Similarity=0.252 Sum_probs=67.1
Q ss_pred CeEEEeCC----CCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEcc----HHH----HHHHHH--HhCCCe
Q 020297 224 NTLFIGNL----GESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFED----VNS----ASSVHH--NLQGAV 285 (328)
Q Consensus 224 ~~LfV~NL----~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~----~~~----A~~Al~--~lnG~~ 285 (328)
+.|||+|| ++.+++++|+++|+.||+|.+++++.++. +|||||+|.| .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 99999999999999999999999998776 8999999996 333 889999 899999
Q ss_pred eCCCCCceeEEEeecC
Q 020297 286 IPSSGSVGMRIQYSKN 301 (328)
Q Consensus 286 i~g~~~~~l~V~~ak~ 301 (328)
|.| +.|+|.+-+.
T Consensus 83 I~G---r~irV~ln~~ 95 (136)
T 2j8a_A 83 IMG---FKFEVILNKH 95 (136)
T ss_dssp ETT---EEEEEEECCT
T ss_pred ecC---cEEEEEECcc
Confidence 999 9999999664
No 318
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=1e-14 Score=119.66 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
...++|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 140 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GR 140 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---Ce
Confidence 457899999999999999999999999 8775542 13699999999999999999999999998 89
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
.|+|.|++.+.
T Consensus 141 ~l~v~~a~~~~ 151 (158)
T 2kn4_A 141 ELRVQMARYGR 151 (158)
T ss_dssp EEEEEEECCSS
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 319
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=4.2e-15 Score=127.79 Aligned_cols=77 Identities=13% Similarity=0.306 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC----CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++|+++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|.| +.|+|.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG---RNIKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC---eeEEEec
Confidence 5899999999999999999999999999999997654 38999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7755
No 320
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=5.2e-15 Score=125.60 Aligned_cols=80 Identities=11% Similarity=0.257 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC---cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~a 299 (328)
.++|||+|||.++|+++|+++|++||.|..|+|.++.. +|||||+|.+.++|.+|++.++ ..|.| +.|+|.|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G---r~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE---TDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT---EECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC---EEEEEEEh
Confidence 58999999999999999999999999999999987543 8999999999999999998665 59999 99999998
Q ss_pred cCCCCCC
Q 020297 300 KNPFGKR 306 (328)
Q Consensus 300 k~~~~~~ 306 (328)
+.-...+
T Consensus 185 ~~y~~~K 191 (193)
T 2voo_A 185 DDYFAKK 191 (193)
T ss_dssp TTC----
T ss_pred HHHHHHh
Confidence 8765544
No 321
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=2.2e-15 Score=107.65 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=59.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 51 ~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
+|||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++ |+|..+. |+.|+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v 72 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVEC 72 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEE
Confidence 59999999999999999999999 6663331 125999999999999999998 9999998 899999
Q ss_pred EEc
Q 020297 123 EMA 125 (328)
Q Consensus 123 ~~a 125 (328)
+||
T Consensus 73 ~~A 75 (75)
T 2mss_A 73 KKA 75 (75)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 322
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=5.1e-15 Score=125.30 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+||+. +|..|.| +.|+|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g---~~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG---RVVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC---EEeeee
Confidence 478999999999999999999999999999999987643 78999999999999999986 9999999 999999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+..+
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98765
No 323
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=115.36 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCC---CcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPG---YEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~---~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||+++|+++|+++|+.|+. +....+... ..||||||+|.+.++|.+|++ |||..|. ||.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---HRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---TEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---CeE
Confidence 356789999999999999999999999933 111112221 236999999999999999999 9999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=119.08 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCccc-------EEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-------QVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~-------i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
..++++|||+|||+++|+++|+++|+.|+.+..+ +.... ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF--- 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC---
Confidence 3567899999999999999999999999444332 21112 34699999999999999999999999998
Q ss_pred CCeEEEEEccccc
Q 020297 117 KSVLHTEMAKKNL 129 (328)
Q Consensus 117 gr~l~v~~a~~~~ 129 (328)
|+.|+|.|++...
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 325
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=5e-15 Score=122.84 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecC------CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~------~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
.++|||+|||.++|+++|+++|++||.|.+++|+++. .+|||||+|.+.++|.+|++.|||..+.+...+.|++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 6899999999999999999999999999999998764 3689999999999999999999999887433378999
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.+++..
T Consensus 83 ~~~~~~ 88 (175)
T 3nmr_A 83 KPADSE 88 (175)
T ss_dssp EECGGG
T ss_pred cccccc
Confidence 998765
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2.9e-15 Score=110.20 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-------~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
.+.++|||+|||.++++++|+++|+.|+...| .|..+ ...||||||+|.+.++|.+|+ .|||..+. |
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~---g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---G 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC---C
Confidence 46899999999999999999999999942222 56444 345899999999999999999 89999998 8
Q ss_pred CeEEEEE
Q 020297 118 SVLHTEM 124 (328)
Q Consensus 118 r~l~v~~ 124 (328)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999973
No 327
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=109.46 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=59.2
Q ss_pred cceEEEcCCCCcC------CHHHHHHHHHhCCCCcccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCC
Q 020297 49 VRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (328)
Q Consensus 49 ~~~LfV~nLp~~~------te~~L~~~f~~~~~~~g~i~~~~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 116 (328)
.++|||+|||.++ ++++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++.|||..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--- 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---
Confidence 3789999999999 789999999999 8885553 23699999999999999999999999998
Q ss_pred CC-eEEE
Q 020297 117 KS-VLHT 122 (328)
Q Consensus 117 gr-~l~v 122 (328)
|+ .|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 88 8876
No 328
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=113.06 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=53.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEec-------CCcceEEEEEccHHHHHHHHHHh
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ-------ERHTVCFIEFEDVNSASSVHHNL 281 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~-------~~~g~aFV~F~~~~~A~~Al~~l 281 (328)
..++|||+||+.++|+++|+++|++||.|. ++++.+ ..+|||||+|.+.++|++||+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 368999999999999999999999999999 777543 23899999999999999999999
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=112.82 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
.+..+|||+|||+++|+++|+++|+.| .+....+... ..||||||+|.+.++|.+|+ .|||..|. ||.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEE
Confidence 446899999999999999999999999 4432223221 23699999999999999999 59999998 8999998
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
.+..+
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88654
No 330
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=9.8e-15 Score=111.48 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCeEEEeCCC--CCCC--------HHHHHHHhccCCCeeEEEEEecC------CcceEEEEEccHHHHHHHHHHhCCC
Q 020297 221 PPCNTLFIGNLG--ESIN--------EEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 221 ~~~~~LfV~NL~--~~~t--------e~~L~~~F~~~G~i~~v~i~~~~------~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
.+++.|.|.|+- .++. +++|+++|++||.|.+|+|.++. .+|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 457899999984 3333 37999999999999999998653 3799999999999999999999999
Q ss_pred eeCCCCCceeEEEeec
Q 020297 285 VIPSSGSVGMRIQYSK 300 (328)
Q Consensus 285 ~i~g~~~~~l~V~~ak 300 (328)
.+.| |.|+|+|..
T Consensus 83 ~f~G---R~i~v~~~~ 95 (105)
T 3v4m_A 83 KFAN---RVVVTKYCD 95 (105)
T ss_dssp EETT---EECEEEEEC
T ss_pred EeCC---CEEEEEEeC
Confidence 9999 999999974
No 331
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.3e-14 Score=113.73 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
.+.++|||+|| ++|+++|+++|+.| |.| +.+...||||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNI 107 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS---SCBCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEE
Confidence 45889999996 69999999999999 766 334467899999999999999999999999998 89999999
Q ss_pred ccccc
Q 020297 125 AKKNL 129 (328)
Q Consensus 125 a~~~~ 129 (328)
++.+.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97653
No 332
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.2e-15 Score=113.18 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=60.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~----~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
++|||+|||.++++++|+++|+.| |.|..+ . ..+|||||+|.+.+ |.+|++.|||..+. |+.|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEE
Confidence 689999999999999999999999 666332 1 23699999999999 99999999999998 89999
Q ss_pred EEEccccc
Q 020297 122 TEMAKKNL 129 (328)
Q Consensus 122 v~~a~~~~ 129 (328)
|+||....
T Consensus 74 V~~a~~~~ 81 (90)
T 2ki2_A 74 VTEANPKK 81 (90)
T ss_dssp EEEC----
T ss_pred EEEcCCCC
Confidence 99997653
No 333
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=9.2e-15 Score=116.81 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCC---CcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPG---YEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~---~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
..+.++|||+|||+++|+++|+++|+.|+. +....+... ..||||||+|.+.++|++|++ |||..|. ||.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---HRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---SSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---CEE
Confidence 456889999999999999999999999943 222222221 236999999999999999999 9999998 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|.++..+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=108.50 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
...++|||+|||.++|+++|+++|+.| |.|..+. +.+ ||||+|.+.++|.+|++ |+|..|. |+.|+|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V 76 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG---GHRLRV 76 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET---TEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC---CEEEEE
Confidence 457899999999999999999999999 7775542 122 99999999999999999 9999998 899999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
+++..+
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 988654
No 335
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.2e-14 Score=120.17 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---C-----CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~-----~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.+.++|||+|||.++++++|+++|+.| |.|..+. . .+|||||+|.+.++|.+||+.|||..|. |+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 142 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQ 142 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 457899999999999999999999999 7774432 1 2699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020297 119 VLHTEMAKKNLF 130 (328)
Q Consensus 119 ~l~v~~a~~~~~ 130 (328)
.|+|.|++.+..
T Consensus 143 ~l~V~~a~~~~~ 154 (165)
T 1rk8_A 143 TIQVDWCFVKGP 154 (165)
T ss_dssp ECEEEESEECC-
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 336
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.3e-15 Score=105.42 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=59.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
++|||+|||.++++++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.++ ..+. |+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEEEec
Confidence 58999999999999999999999933222222221 136999999999999999999999 8887 899999987
No 337
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.6e-14 Score=128.33 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 221 ~~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
...++|||+|||.++|+++|+++|+.||.|..|+|. .++|||||+|.+.++|.+|+..|||..|.| +.|+|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN--RDRGFGFIRLESRTLAEIAKAELDGTILKS---RPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCcEEEEEECCHHHHHHHHHHcCCcEECC---ceeEeeecc
Confidence 346899999999999999999999999999999997 458999999999999999999999999999 999999987
Q ss_pred C
Q 020297 301 N 301 (328)
Q Consensus 301 ~ 301 (328)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=8.4e-15 Score=113.81 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=61.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCc-ceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe-----EE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSV-----LH 121 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~k-g~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~-----l~ 121 (328)
...+|||+|||+++++++|+++|+.| |.|+.+.-.+ |||||+|.+.++|.+||+.|||..|. |+. ++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCC---CTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEeeeEEEE
Confidence 46899999999999999999999999 8886665333 99999999999999999999999998 888 55
Q ss_pred EEEcc
Q 020297 122 TEMAK 126 (328)
Q Consensus 122 v~~a~ 126 (328)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 55543
No 339
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=5.9e-15 Score=128.64 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcc--cEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g--~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..++|||+||++++|+++|+++|+.| | .|+.++ ..||||||+|.+.++|.+||+.|||..|. |
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---G 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---G 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---T
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---C
Confidence 57799999999999999999999999 7 564332 13699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|+|.|++.+.
T Consensus 140 r~l~V~~a~~~~ 151 (229)
T 3q2s_C 140 QNPVVTPVNKQF 151 (229)
T ss_dssp BCCEEEECCHHH
T ss_pred EEeEEEECCCCc
Confidence 999999997653
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=110.17 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeC--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~ 124 (328)
...++|||+|||+++|+++|+++|+.|......|+.-++ .||||||+|.+.++|++||+ +|+..|. ||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEEEEE
Confidence 457899999999999999999999999422111111122 25999999999999999995 8999998 89999998
Q ss_pred cccc
Q 020297 125 AKKN 128 (328)
Q Consensus 125 a~~~ 128 (328)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7644
No 341
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=113.42 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=64.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEe--e---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY--K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~--~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
...++|||+|||+++|+++|+++|+.|+.+ |.| +.+ . ..+|||||+|.+.++|.+|++ |+|..+. ||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~-~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIR-NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBT-TTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCc-CCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---CeE
Confidence 568899999999999999999999998321 113 222 1 236999999999999999999 9999998 899
Q ss_pred EEEEEccccc
Q 020297 120 LHTEMAKKNL 129 (328)
Q Consensus 120 l~v~~a~~~~ 129 (328)
|+|.++..+.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987543
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=8.9e-16 Score=119.48 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE----------e--e----CCcceEEEEeCCHHHHHHHHHHhcCc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN----------Y--K----GEKPMGFALFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~----------~--~----~~kg~aFV~F~~~~~A~~A~~~l~g~ 110 (328)
.+.++|||+|||.++++++|+++|+.| |.|.. + . ..+|||||+|.+.++|.+|++.|||.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 468899999999999999999999999 55533 2 1 23699999999999999999999999
Q ss_pred eeCCCCCCeEEEEEccccccc
Q 020297 111 IFDAETKSVLHTEMAKKNLFV 131 (328)
Q Consensus 111 ~~~~~~gr~l~v~~a~~~~~~ 131 (328)
.|. |+.|+|+|++.+...
T Consensus 81 ~~~---g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 81 EFS---GNPIKVSFATRRADF 98 (116)
Confidence 998 899999999876443
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.9e-14 Score=125.38 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCCcceEEEcCCCCcC---------CHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeC-
Q 020297 46 HDEVRTIFITGLPDDV---------KERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFD- 113 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~---------te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~- 113 (328)
...+++|||+||+.++ +|++|+++|+.| |.|..++ ..||||||+|.+.++|+.|+++|+|..+.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3468999999999998 799999999999 9885553 56899999999999999999999999991
Q ss_pred --------CCCCCeEEEEEcccccc
Q 020297 114 --------AETKSVLHTEMAKKNLF 130 (328)
Q Consensus 114 --------~~~gr~l~v~~a~~~~~ 130 (328)
...|+.|.|.||+.+..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 00289999999987644
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=2.9e-14 Score=119.27 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
..+.++|||+|||.++++++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr 157 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GR 157 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CE
Confidence 3567899999999999999999999999 6653321 23699999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020297 119 VLHTEMAKKN 128 (328)
Q Consensus 119 ~l~v~~a~~~ 128 (328)
.|+|+|+...
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9999999765
No 345
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-13 Score=103.26 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeE
Q 020297 223 CNTLFIGNLG-------ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (328)
Q Consensus 223 ~~~LfV~NL~-------~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~ 295 (328)
..+|-|.-.. .++++++|+++|++||.|++|+|+. ..+|||||+|.+.++|+.||+.++| +.+ ++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g---~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVD---NPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSS---SBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCC---CeEE
Confidence 4567776544 4589999999999999999999984 6689999999999999999998766 567 8999
Q ss_pred EEeecCCC
Q 020297 296 IQYSKNPF 303 (328)
Q Consensus 296 V~~ak~~~ 303 (328)
|.|++.+.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99998773
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=6.1e-14 Score=103.79 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
..+..+|||+|||+++|+++|+++|+.| |.|..++ ..||||||+|++.++|.+ |+|..+. ..|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~-~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLI-IKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEE-ETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcc-cCCEEEEE
Confidence 3457899999999999999999999999 8886654 357999999999999983 5666552 12799999
Q ss_pred EEcccc
Q 020297 123 EMAKKN 128 (328)
Q Consensus 123 ~~a~~~ 128 (328)
.+++.+
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998765
No 347
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=2.7e-14 Score=130.82 Aligned_cols=79 Identities=10% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCCCeEEEeC--CCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCc--eeE
Q 020297 220 NPPCNTLFIGN--LGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV--GMR 295 (328)
Q Consensus 220 ~~~~~~LfV~N--L~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~--~l~ 295 (328)
..++++|||+| |+..+||++|+++|++||.|.+|.+. .+||||||+|.+.++|++||+.|||+++.+...+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~--~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC--TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 34578999999 57899999999999999999998885 4789999999999999999999999999431113 689
Q ss_pred EEeec
Q 020297 296 IQYSK 300 (328)
Q Consensus 296 V~~ak 300 (328)
|+|.+
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 99974
No 348
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=5.4e-15 Score=118.56 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe-e----CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~-~----~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
....++|||+|||+++|+++|+++|+.|. +. . +.+ + ..||||||+|++.++|++|| .+|+..|. ||.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~-~-v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~i 115 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PV-R-VHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRYI 115 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CS-E-EECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce-E-EEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEEE
Confidence 45578999999999999999999999993 11 1 222 1 23699999999999999999 69999998 8999
Q ss_pred EEEEcccc
Q 020297 121 HTEMAKKN 128 (328)
Q Consensus 121 ~v~~a~~~ 128 (328)
+|.++...
T Consensus 116 ~V~~a~~~ 123 (139)
T 2hgn_A 116 ELFLNSTT 123 (139)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99988654
No 349
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.2e-14 Score=103.80 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=58.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEE
Q 020297 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (328)
Q Consensus 51 ~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v 122 (328)
||||+|||.++++++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++ +++..+. |+.|+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~---g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG---LSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT---TBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC---CEEEEE
Confidence 69999999999999999999999 6663331 236999999999999999999 5888998 899999
Q ss_pred EEc
Q 020297 123 EMA 125 (328)
Q Consensus 123 ~~a 125 (328)
.+|
T Consensus 73 ~~a 75 (75)
T 1iqt_A 73 KVA 75 (75)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
No 350
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=4.7e-14 Score=116.78 Aligned_cols=75 Identities=20% Similarity=0.442 Sum_probs=68.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~ 290 (328)
+.++|||+|||.++|+++|+++|++| | .|..+++. .++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g-- 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhCCcEecC--
Confidence 36899999999999999999999999 6 77888775 45899999999999999999 899999999
Q ss_pred CceeEEEeecCC
Q 020297 291 SVGMRIQYSKNP 302 (328)
Q Consensus 291 ~~~l~V~~ak~~ 302 (328)
+.|+|.|++..
T Consensus 78 -~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 -QSLKIRRPHDY 88 (172)
T ss_dssp -EECEEECCSSC
T ss_pred -ceeeecCCccc
Confidence 99999998755
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=106.38 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCcee--CCCCCCeEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIF--DAETKSVLH 121 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~--~~~~gr~l~ 121 (328)
.+.++|||+|||.++++++|+++|+.| |.|..++ ..||||||+|.+.++|++ +++..+ . |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~---g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIK---GISVH 71 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEET---TEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeC---CEEEE
Confidence 457999999999999999999999999 7774443 357999999999999975 344444 5 89999
Q ss_pred EEEcccccc
Q 020297 122 TEMAKKNLF 130 (328)
Q Consensus 122 v~~a~~~~~ 130 (328)
|.|++.+..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 352
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=9.6e-14 Score=107.35 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCeEEEeCCCCCCC----------HHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 222 PCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 222 ~~~~LfV~NL~~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
+++.|.|.|+=..-. +++|++.|++||.|++|.|.++..+||+||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 467899999864322 2588999999999999999876669999999999999999999999999999
Q ss_pred ceeEEEeec
Q 020297 292 VGMRIQYSK 300 (328)
Q Consensus 292 ~~l~V~~ak 300 (328)
|.|+|.|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 353
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3.3e-14 Score=117.11 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC----cceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ 298 (328)
.++|||+|||.++|+++|+++|++||.|.+++|+++.. +|||||+|.+.++|.+||+. +..|.| +.|+|.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g---~~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG---KVIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT---EECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC---eEccccc
Confidence 68999999999999999999999999999999987542 79999999999999999994 678999 8999999
Q ss_pred ecCC
Q 020297 299 SKNP 302 (328)
Q Consensus 299 ak~~ 302 (328)
+..+
T Consensus 78 ~~~~ 81 (167)
T 2cjk_A 78 AIPR 81 (167)
T ss_dssp CCCH
T ss_pred ccch
Confidence 7653
No 354
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.8e-14 Score=118.47 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
.++|||+|||.++|+++|+++|++| | .|..+++. ..+|||||+|.+.++|.+|| .|||..|.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g--- 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG--- 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETT---
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC---
Confidence 6899999999999999999999999 5 67777774 56899999999999999999 899999999
Q ss_pred ceeEEEeecCC
Q 020297 292 VGMRIQYSKNP 302 (328)
Q Consensus 292 ~~l~V~~ak~~ 302 (328)
+.|+|.|++..
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99999998766
No 355
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=1.2e-13 Score=114.66 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
...++|||+|||.++++++|+++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 457899999999999999999999999 8875552 23699999999999999999999999998 8999999
Q ss_pred Ecccc
Q 020297 124 MAKKN 128 (328)
Q Consensus 124 ~a~~~ 128 (328)
|++.+
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99765
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.5e-13 Score=106.99 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCCC--C---CHHHHHHHhccCCCeeEEEEEecCC--------cceEEEEEccHHHHHHHHHHhCCCeeCC
Q 020297 222 PCNTLFIGNLGES--I---NEEELRGLFSAQPGFKQMKVLRQER--------HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (328)
Q Consensus 222 ~~~~LfV~NL~~~--~---te~~L~~~F~~~G~i~~v~i~~~~~--------~g~aFV~F~~~~~A~~Al~~lnG~~i~g 288 (328)
++++|+|.|+-.. + -+++|++.|++||.|.+|+|.++.. +|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4789999998521 2 3689999999999999999987532 5899999999999999999999999999
Q ss_pred CCCceeEEEeec
Q 020297 289 SGSVGMRIQYSK 300 (328)
Q Consensus 289 ~~~~~l~V~~ak 300 (328)
|.|+|.|..
T Consensus 99 ---R~i~v~~~~ 107 (118)
T 3ue2_A 99 ---RKVVAEVYD 107 (118)
T ss_dssp ---EECEEEEEC
T ss_pred ---cEEEEEEcC
Confidence 999999974
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=2.8e-14 Score=112.34 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc-cE-EEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQ-VNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g-~i-~~~~---~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~ 121 (328)
...++|||+|||+++|+++|+++|+.| ++.- .| +... ..||||||+|.+.++|++|++ +++..|. ||.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~---gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG---HRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT---TBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC---CEEEE
Confidence 457889999999999999999999999 3321 11 1111 236999999999999999998 5788888 89999
Q ss_pred EEEccc
Q 020297 122 TEMAKK 127 (328)
Q Consensus 122 v~~a~~ 127 (328)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=3.2e-14 Score=107.94 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
...++|||+|||.++++++|+++|+.| |.|..++ ..||||||+|.+.++|.+|++ +|..+. |+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~ 77 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKK 77 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEE
Confidence 457899999999999999999999999 7774432 135999999999999999998 999998 899
Q ss_pred EEEEEccccc
Q 020297 120 LHTEMAKKNL 129 (328)
Q Consensus 120 l~v~~a~~~~ 129 (328)
|.|.++..+.
T Consensus 78 l~v~~a~~~~ 87 (102)
T 2xs2_A 78 LKLGPAIRKQ 87 (102)
T ss_dssp CEEEEEEECC
T ss_pred EEEEECCcCc
Confidence 9999987553
No 359
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=2e-13 Score=129.78 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 46 ~~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~--------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
..+.++|||+|||+++|+++|+++|+.| |.|+.+. ..+|||||+|.+.++|.+||+.|||..|. |
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---g 171 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---G 171 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---C
Confidence 3456899999999999999999999999 7774432 13699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020297 118 SVLHTEMAKKNL 129 (328)
Q Consensus 118 r~l~v~~a~~~~ 129 (328)
+.|.|+|++.+.
T Consensus 172 r~i~V~~a~~~~ 183 (437)
T 3pgw_S 172 RRVLVDVERGRT 183 (437)
T ss_pred EEEEEEEeCCCC
Confidence 999999997653
No 360
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9e-14 Score=109.09 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcc---cE-EEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA---SQ-VNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g---~i-~~~-~~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
.+..+|||+|||+++|+++|+++|+.|+.+.| .| +.. ++ .||||||+|.+.++|.+|++. |+..|. ||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeE
Confidence 45789999999999999999999999954321 22 222 12 259999999999999999995 998888 899
Q ss_pred EEEEEcccc
Q 020297 120 LHTEMAKKN 128 (328)
Q Consensus 120 l~v~~a~~~ 128 (328)
|+|..+..+
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999888644
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=2.7e-14 Score=108.85 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=60.0
Q ss_pred EeCCCCCCCHHHHHHHh------------ccCCCeeEEEEEecC---CcceEEEEEccHHHHHHHHHHhCCCeeCCCCCc
Q 020297 228 IGNLGESINEEELRGLF------------SAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (328)
Q Consensus 228 V~NL~~~~te~~L~~~F------------~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~ 292 (328)
+.||+.++++++|++.| ++||.|.+|+|.++. .+|||||+|.+.++|.+|++.|||+.+.| |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---r 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---Q 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT---E
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC---E
Confidence 45666677777777666 999999999998654 28999999999999999999999999999 9
Q ss_pred eeEEEee
Q 020297 293 GMRIQYS 299 (328)
Q Consensus 293 ~l~V~~a 299 (328)
.|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999996
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.7e-13 Score=101.55 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=63.4
Q ss_pred CCcceEEEcCCCCcCC-----------HHHHHHHHHhCCCCcccEEE--e--eCCcceEEEEeCCHHHHHHHHHHhcCce
Q 020297 47 DEVRTIFITGLPDDVK-----------ERELQNLLRWLPGYEASQVN--Y--KGEKPMGFALFSTAQLAVAAKDALQEMI 111 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~t-----------e~~L~~~f~~~~~~~g~i~~--~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~ 111 (328)
.+.++|+|+||..... +++|+++|++| |.|.. + +..+|||||+|.+.++|.+|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4689999999944332 68999999999 55522 2 2357999999999999999999999999
Q ss_pred eCCCCCCeEEEEEcccccc
Q 020297 112 FDAETKSVLHTEMAKKNLF 130 (328)
Q Consensus 112 ~~~~~gr~l~v~~a~~~~~ 130 (328)
|. |+.|+|+|+..+.+
T Consensus 89 ~~---gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FG---GRQITAQAWDGTTD 104 (112)
T ss_dssp ET---TEECEEEECCSCCC
T ss_pred EC---CcEEEEEEeCCCCC
Confidence 98 89999999976543
No 363
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=105.08 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
...++|||+|||+++|+++|+++|+.|+.+. .++... ..||||||+|.+.++|++|++.|++ +. |+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~---G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED---GKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---TEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---CcE
Confidence 4578999999999999999999999993333 111111 2369999999999999999999843 55 677
Q ss_pred EEEEEcc
Q 020297 120 LHTEMAK 126 (328)
Q Consensus 120 l~v~~a~ 126 (328)
+.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 7776543
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=7e-13 Score=121.44 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=66.6
Q ss_pred CCCCcceEEEcC--CCCcCCHHHHHHHHHhCCCCcccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC--
Q 020297 45 AHDEVRTIFITG--LPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-- 118 (328)
Q Consensus 45 ~~~~~~~LfV~n--Lp~~~te~~L~~~f~~~~~~~g~i~~~~--~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr-- 118 (328)
...++++|||+| |++.+||++|+++|++| |.|..+. ..||||||+|++.++|++|++.|||..+....|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 356789999999 58899999999999999 8885553 4789999999999999999999999999544466
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
.|.++|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888885
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=1.6e-12 Score=99.07 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=63.4
Q ss_pred CCcceEEEcCCCC-----cCCHHHHHHHHHhCCCCcccEEEe---e------CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 47 DEVRTIFITGLPD-----DVKERELQNLLRWLPGYEASQVNY---K------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 47 ~~~~~LfV~nLp~-----~~te~~L~~~f~~~~~~~g~i~~~---~------~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
.+.++|+|+||.. +-++++|++.|++| |.|..+ + ..+|||||+|.+.++|.+|++.|||..|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4688999999973 34789999999999 777443 1 2369999999999999999999999999
Q ss_pred CCCCCCeEEEEEcccc
Q 020297 113 DAETKSVLHTEMAKKN 128 (328)
Q Consensus 113 ~~~~gr~l~v~~a~~~ 128 (328)
. ||.|+|.|+...
T Consensus 82 ~---Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 G---GRVVKACFYNLD 94 (105)
T ss_dssp T---TEECEEEECCHH
T ss_pred C---CcEEEEEEcCHH
Confidence 8 999999999754
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.8e-12 Score=109.93 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=62.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
..++|||+|||.++|+++|+++|+.| |.|..++ ..||||||+|++.++|.+|++.+ +..+. |+.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~---Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYK---ETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTS----CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEET---TEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcC----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeEC---CEEE
Confidence 36899999999999999999999999 8774442 23699999999999999999865 45888 8999
Q ss_pred EEEEcccc
Q 020297 121 HTEMAKKN 128 (328)
Q Consensus 121 ~v~~a~~~ 128 (328)
+|.|++.-
T Consensus 180 ~V~~~~~y 187 (193)
T 2voo_A 180 LILFKDDY 187 (193)
T ss_dssp EEEETTTC
T ss_pred EEEEhHHH
Confidence 99998654
No 367
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=6.5e-12 Score=91.41 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCCCCeEEEeCCC----CCCCH----HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCC
Q 020297 220 NPPCNTLFIGNLG----ESINE----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (328)
Q Consensus 220 ~~~~~~LfV~NL~----~~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~ 291 (328)
+|+..||+|.-++ .+.-+ .+|.+.|++||.|..++|..+ .+||+|.+.++|.+||+ |||..+.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G--- 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN--- 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT---
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC---
Confidence 4567788888765 22323 678899999999999999863 39999999999999998 99999999
Q ss_pred ceeEEEeecCC
Q 020297 292 VGMRIQYSKNP 302 (328)
Q Consensus 292 ~~l~V~~ak~~ 302 (328)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998765
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.9e-11 Score=94.75 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCCCCeEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEcc-HHHHHHHHHHhC--CCeeCCCCCcee
Q 020297 219 DNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFED-VNSASSVHHNLQ--GAVIPSSGSVGM 294 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~-~~~A~~Al~~ln--G~~i~g~~~~~l 294 (328)
..++++.|||+||+.+ +++++|+++|++||.|.+|++.+ +...|||+|.+ .++|..|+..|| |.+|.+ ..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g---~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAKEGIILFKEKAKEALGKAKDANNGNLQLRN---KEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS---SSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCChHHHHHHHHHhhcCCcEEeC---cEE
Confidence 3456899999999999 99999999999999999999975 44589999999 899999999995 788888 777
Q ss_pred EEEe
Q 020297 295 RIQY 298 (328)
Q Consensus 295 ~V~~ 298 (328)
+++.
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 369
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.8e-12 Score=99.62 Aligned_cols=72 Identities=7% Similarity=0.069 Sum_probs=59.1
Q ss_pred ceEEEcCC----CCcCCHHHHHHHHHhCCCCcccEEEe----e----CCcceEEEEeCC----HHH----HHHHHH--Hh
Q 020297 50 RTIFITGL----PDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFST----AQL----AVAAKD--AL 107 (328)
Q Consensus 50 ~~LfV~nL----p~~~te~~L~~~f~~~~~~~g~i~~~----~----~~kg~aFV~F~~----~~~----A~~A~~--~l 107 (328)
.+|||+|| |+.+++++|+++|+.| |.|..+ . ..+|||||+|.| .++ |.+|+. .|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 58999999 9999999999999999 666332 2 236999999996 433 888988 78
Q ss_pred cCceeCCCCCCeEEEEEcccc
Q 020297 108 QEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 108 ~g~~~~~~~gr~l~v~~a~~~ 128 (328)
+|..|+ |+.|+|++-+..
T Consensus 79 ng~~I~---Gr~irV~ln~~g 96 (136)
T 2j8a_A 79 SGCFIM---GFKFEVILNKHS 96 (136)
T ss_dssp TCEEET---TEEEEEEECCTT
T ss_pred cCCeec---CcEEEEEECccc
Confidence 999999 999999987654
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=2.2e-11 Score=92.76 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=63.2
Q ss_pred CCcceEEEcCC--CCcCC--------HHHHHHHHHhCCCCcccEEEee----------CCcceEEEEeCCHHHHHHHHHH
Q 020297 47 DEVRTIFITGL--PDDVK--------ERELQNLLRWLPGYEASQVNYK----------GEKPMGFALFSTAQLAVAAKDA 106 (328)
Q Consensus 47 ~~~~~LfV~nL--p~~~t--------e~~L~~~f~~~~~~~g~i~~~~----------~~kg~aFV~F~~~~~A~~A~~~ 106 (328)
.+.+.|+++|+ +.++. ++||++.|++| |.|..++ ..+|+|||+|.+.++|.+|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 46889999998 44443 46999999999 8886653 1369999999999999999999
Q ss_pred hcCceeCCCCCCeEEEEEcccc
Q 020297 107 LQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 107 l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
|||..|. ||.|+|.|+...
T Consensus 79 lnG~~f~---GR~i~v~~~~~~ 97 (105)
T 3v4m_A 79 LTGRKFA---NRVVVTKYCDPD 97 (105)
T ss_dssp HTTCEET---TEECEEEEECHH
T ss_pred hCCCEeC---CCEEEEEEeCHH
Confidence 9999998 999999998644
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1e-10 Score=88.13 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=58.6
Q ss_pred cceEEEcCCC-------CcCCHHHHHHHHHhCCCCcccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 49 VRTIFITGLP-------DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 49 ~~~LfV~nLp-------~~~te~~L~~~f~~~~~~~g~i~~~---~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
.++|-|+-.. .++++++|+++|+.| |.|..+ +..||||||+|++.++|.+|++.+++ +. |+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~----G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY----GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LV---DN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT----SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CS---SS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc----CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CC---CC
Confidence 5577777655 468999999999999 887544 34579999999999999999998655 44 79
Q ss_pred eEEEEEccccc
Q 020297 119 VLHTEMAKKNL 129 (328)
Q Consensus 119 ~l~v~~a~~~~ 129 (328)
+|+|+|++.+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999997653
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=1.1e-11 Score=94.34 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=54.9
Q ss_pred EcCCCCcCCHHHHHHHH------------HhCCCCcccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCC
Q 020297 54 ITGLPDDVKERELQNLL------------RWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (328)
Q Consensus 54 V~nLp~~~te~~L~~~f------------~~~~~~~g~i~~~~-------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~ 114 (328)
+.||+..+++++|++.| ++| |.|..++ ..+|||||+|.+.++|.+|++.|||..+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~- 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN- 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 56777888888887776 888 8885552 13699999999999999999999999998
Q ss_pred CCCCeEEEEEc
Q 020297 115 ETKSVLHTEMA 125 (328)
Q Consensus 115 ~~gr~l~v~~a 125 (328)
||.|+|+|+
T Consensus 95 --Gr~i~v~~s 103 (104)
T 1jmt_A 95 --GQPIHAELS 103 (104)
T ss_dssp --TEECCEEEC
T ss_pred --CEEEEEEEc
Confidence 999999986
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=4.4e-11 Score=87.44 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=62.0
Q ss_pred CCCCCCeEEEeCCCCC------CCH---HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCC
Q 020297 219 DNPPCNTLFIGNLGES------INE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (328)
Q Consensus 219 ~~~~~~~LfV~NL~~~------~te---~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~ 289 (328)
-+||..||+|.-++.+ .++ .+|.+.|++||.|..++|..+ -+||+|.+.++|.+||+ |||..|.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G- 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG- 84 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC-
Confidence 3556789999988643 232 568899999999999999864 29999999999999999 99999999
Q ss_pred CCceeEEEee
Q 020297 290 GSVGMRIQYS 299 (328)
Q Consensus 290 ~~~~l~V~~a 299 (328)
|.|+|++.
T Consensus 85 --r~L~V~~k 92 (95)
T 1ufw_A 85 --RAVKISGP 92 (95)
T ss_dssp --EEEEEECC
T ss_pred --eEEEEecc
Confidence 99999984
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.4e-10 Score=89.41 Aligned_cols=76 Identities=8% Similarity=0.065 Sum_probs=60.8
Q ss_pred CCcceEEEcCCCCcCC----------HHHHHHHHHhCCCCcccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020297 47 DEVRTIFITGLPDDVK----------ERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIF 112 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~t----------e~~L~~~f~~~~~~~g~i~~~----~~~kg~aFV~F~~~~~A~~A~~~l~g~~~ 112 (328)
.+.+.|.++|+=..-. ++||++.|++| |.|..+ ...+|+|||+|.+.++|.+|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578899999854322 35778888888 766333 23479999999999999999999999999
Q ss_pred CCCCCCeEEEEEccccc
Q 020297 113 DAETKSVLHTEMAKKNL 129 (328)
Q Consensus 113 ~~~~gr~l~v~~a~~~~ 129 (328)
. ||.|+|+|+....
T Consensus 81 ~---GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 A---GKMITAAYVPLPT 94 (114)
T ss_dssp T---TEECEEEEECHHH
T ss_pred C---CEEEEEEEEcHHH
Confidence 8 9999999986543
No 375
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=1.3e-10 Score=90.32 Aligned_cols=73 Identities=19% Similarity=0.108 Sum_probs=60.9
Q ss_pred CcceEEEcCCCCc-----CCHHHHHHHHHhCCCCcccEEEee------C------CcceEEEEeCCHHHHHHHHHHhcCc
Q 020297 48 EVRTIFITGLPDD-----VKERELQNLLRWLPGYEASQVNYK------G------EKPMGFALFSTAQLAVAAKDALQEM 110 (328)
Q Consensus 48 ~~~~LfV~nLp~~-----~te~~L~~~f~~~~~~~g~i~~~~------~------~kg~aFV~F~~~~~A~~A~~~l~g~ 110 (328)
+.++|+|+|+-.. --++||++.|++| |.|..++ + .+|++||+|.+.++|.+|++.|||.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 6889999999422 2368999999999 7774441 1 2499999999999999999999999
Q ss_pred eeCCCCCCeEEEEEccc
Q 020297 111 IFDAETKSVLHTEMAKK 127 (328)
Q Consensus 111 ~~~~~~gr~l~v~~a~~ 127 (328)
.|. ||.|+|.|+..
T Consensus 95 ~f~---GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFA---GRKVVAEVYDQ 108 (118)
T ss_dssp EET---TEECEEEEECH
T ss_pred EEC---CcEEEEEEcCh
Confidence 998 99999999854
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.6e-09 Score=77.66 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=60.1
Q ss_pred CCcceEEEcCCC----CcCCH----HHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCC
Q 020297 47 DEVRTIFITGLP----DDVKE----RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (328)
Q Consensus 47 ~~~~~LfV~nLp----~~~te----~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr 118 (328)
++..||+|.-.+ .+.-. .+|.+.|+.| |.|+.++--.+.+||+|.+.++|.+|++ |||..+. ||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~---Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL---NR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET---TE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC---Ce
Confidence 467789998887 23444 5788888888 9887776444669999999999999999 9999999 99
Q ss_pred eEEEEEccc
Q 020297 119 VLHTEMAKK 127 (328)
Q Consensus 119 ~l~v~~a~~ 127 (328)
.|+|++++.
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999998864
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.3e-09 Score=92.58 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCHHHHHHHhccCCCeeEEEEEec--------CCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 235 INEEELRGLFSAQPGFKQMKVLRQ--------ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 235 ~te~~L~~~F~~~G~i~~v~i~~~--------~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
-.+++|+..|++||.|.+++|.++ ..+|++||+|.+.++|.+|++.|||+.+.| |.|++.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g---r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG---RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC---eEEEEEEcC
Confidence 356899999999999999999744 237899999999999999999999999999 999999964
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.3e-08 Score=77.37 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCcceEEEcCCCCc-CCHHHHHHHHHhCCCCcccEEEe--eCCcceEEEEeCC-HHHHHHHHHHhc--CceeCCCCCCeE
Q 020297 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFST-AQLAVAAKDALQ--EMIFDAETKSVL 120 (328)
Q Consensus 47 ~~~~~LfV~nLp~~-~te~~L~~~f~~~~~~~g~i~~~--~~~kg~aFV~F~~-~~~A~~A~~~l~--g~~~~~~~gr~l 120 (328)
..+..|||+||+++ +++++|+++|+.| |.|..+ ....-.|||.|.+ .++|..|+..|+ +..|. |..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLR---NKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTT---SSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEe---CcEE
Confidence 35889999999999 9999999999999 988555 3445689999999 899999999995 77777 7888
Q ss_pred EEEEcc
Q 020297 121 HTEMAK 126 (328)
Q Consensus 121 ~v~~a~ 126 (328)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.7e-08 Score=73.39 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccC-----CCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQ-----PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.++|-+-|||..+++..|+.+...| |.|+.+.+. .+.+=|+|+|.|...|.+|.-+|||.+|.| +.|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~--pDH~GAivef~d~~~AgKasLaL~G~ef~g---r~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV--SDFNGAIIIFRDSKFAAKMLMILNGSQFQG---KVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE--TTTTEEEEECSCHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe--cCCCceEEEEccchhhHHHHhhcCCeeecC---eEEEec
Confidence 4789999999999999999999999 999999997 455679999999999999999999999999 999986
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=3.5e-08 Score=72.11 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=56.3
Q ss_pred CCcceEEEcCCCCc-----CCH----HHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCC
Q 020297 47 DEVRTIFITGLPDD-----VKE----RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (328)
Q Consensus 47 ~~~~~LfV~nLp~~-----~te----~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 117 (328)
++..||+|.-++.+ +-. .+|.+.|+.| |.++.++--..-+||+|.+.++|.+|++ |+|..+. |
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~---G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVK---G 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEET---T
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeC---C
Confidence 56789999998742 333 4688888898 8774443222339999999999999999 9999999 9
Q ss_pred CeEEEEEcc
Q 020297 118 SVLHTEMAK 126 (328)
Q Consensus 118 r~l~v~~a~ 126 (328)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998653
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=1.1e-06 Score=75.67 Aligned_cols=61 Identities=18% Similarity=0.023 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhCCCCcccEEEee------------CCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcccc
Q 020297 61 VKERELQNLLRWLPGYEASQVNYK------------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (328)
Q Consensus 61 ~te~~L~~~f~~~~~~~g~i~~~~------------~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~~~ 128 (328)
-.+++|++.|++| |.|..+. ..+|++||+|.+.++|.+|++.|||..|. ||.|++.|+...
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~---gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA---GRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEECCHH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC---CeEEEEEEcCHH
Confidence 4567899999999 8774442 23599999999999999999999999998 999999998643
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=3.3e-06 Score=62.71 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=63.4
Q ss_pred CCeEEEeCCCCCC-CH----HHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 223 CNTLFIGNLGESI-NE----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 223 ~~~LfV~NL~~~~-te----~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
.++|+|.||+.++ +. ++++++|..|+++..+.....-+ -..|.|.+.++|.+|...|||..+.| +.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g---~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG---KEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT---EECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC---ceeEEE
Confidence 3789999998765 32 57789999999999988874333 36899999999999999999999999 899999
Q ss_pred eecCC
Q 020297 298 YSKNP 302 (328)
Q Consensus 298 ~ak~~ 302 (328)
|+...
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98833
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=7.4e-06 Score=61.05 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhC-CCCcccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWL-PGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~-~~~~g~i~~~--~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
+..|+|=+=|||+++++..|+.+++.+ ...+|.+.++ ....+=|+|+|.|...|.+|.-+|+|..|. ||.|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec---CeEEEec
Confidence 347899999999999999999999998 5566766444 577788999999999999999889999999 8999996
Q ss_pred E
Q 020297 124 M 124 (328)
Q Consensus 124 ~ 124 (328)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=9.9e-06 Score=60.12 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=57.0
Q ss_pred cceEEEcCCCCcC-CHH----HHHHHHHhCCCCcccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeE
Q 020297 49 VRTIFITGLPDDV-KER----ELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (328)
Q Consensus 49 ~~~LfV~nLp~~~-te~----~L~~~f~~~~~~~g~i~~~---~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l 120 (328)
-.+|+|.||+.++ +.+ .++++|..| +.+..+ ++-| =..|.|.+.++|.+|...|++..|. |+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~---g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFL---GKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEET---TEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceec---Ccee
Confidence 4579999999876 444 556777777 766544 4444 4699999999999999999999999 8999
Q ss_pred EEEEccc
Q 020297 121 HTEMAKK 127 (328)
Q Consensus 121 ~v~~a~~ 127 (328)
+|.|+..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999963
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00039 Score=50.57 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=60.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC------cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc--eeE
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV--GMR 295 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~--~l~ 295 (328)
+.|.|++||+.+||+++.+.++.+..+.....+..+- -.-|+|.|.+.++...-.+.++|+.+.++... +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4689999999999999999999999888777764331 34799999999999999999999999774222 234
Q ss_pred EEee
Q 020297 296 IQYS 299 (328)
Q Consensus 296 V~~a 299 (328)
|+||
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.00039 Score=51.30 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=55.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCC-CCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEE
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~-~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~ 123 (328)
-.++|.|.|||.++.++.|.-+|+.-. +--|.|..+....+-|+|+|.+.+.|++.++ -..+.++ +-.|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L~---~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHELH---GAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBSS---SSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCcceec---CeEEEEE
Confidence 468999999999999999999999842 3345665554333889999999999999876 3355665 5677774
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.003 Score=46.62 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=59.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhcc---C--CCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSA---Q--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~---~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V 296 (328)
..++|.|.|||++++++-|.-.|+. - |.|..++... +-|+|+|.+.+.|++.|+. .-+.|++ ..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~---~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG---AQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS---SBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC---eEEEE
Confidence 3689999999999999999999987 2 4789988863 6799999999999999873 3567777 68888
Q ss_pred EeecCC
Q 020297 297 QYSKNP 302 (328)
Q Consensus 297 ~~ak~~ 302 (328)
.-.-..
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 654333
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00061 Score=51.88 Aligned_cols=70 Identities=7% Similarity=0.018 Sum_probs=58.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~~ak 300 (328)
.+-|.|-+.+... -..|...|++||.|++... ..+.++-.|+|.++.+|++||+ .||..|.+ .+.|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g----~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE----SIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT----TEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC----CEEEEEEE
Confidence 5678888999884 6777889999999998887 3567899999999999999998 59999986 55555544
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.36 E-value=0.001 Score=48.36 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=56.0
Q ss_pred ceEEEcCCCCcCCHHHHHHHHHhCCCCcccE--EEe-eC---C----cceEEEEeCCHHHHHHHHHHhcCceeCCCCCCe
Q 020297 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY-KG---E----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (328)
Q Consensus 50 ~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i--~~~-~~---~----kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~ 119 (328)
.+|.|++||..+||+++.+.+..+ ..+ ... .+ . -.-|+|.|.+.+++..-.+.++|..|.+..|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 479999999999999999999988 343 221 11 1 177999999999999999999999995544533
Q ss_pred --EEEEEcc
Q 020297 120 --LHTEMAK 126 (328)
Q Consensus 120 --l~v~~a~ 126 (328)
-.|+||-
T Consensus 78 ~~a~VE~AP 86 (91)
T 1uw4_A 78 YPAIVEFAP 86 (91)
T ss_dssp EECEEEECS
T ss_pred eeeEEEEcC
Confidence 2467664
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.11 E-value=0.0016 Score=47.56 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
...++| +.|.+....||..+|+.||.| .|+.+.+ .-|||.|.+++.|..||+.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET---TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999964 4455544 459999999999999999874
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.10 E-value=0.0015 Score=47.63 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=44.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
.+.++| ++|..++-.||.++|+.| |-+ |++.+. ..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f----ggv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF----GNIQISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT----CSCCCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc----CCEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 566777 999999999999999999 433 554322 589999999999999999774
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.0011 Score=48.44 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=45.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
..++| +.|.+....||..+|+.||. ..|+.+.+ .-|||.|.+++.|..||+.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999999994 45555654 459999999999999999875
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.70 E-value=0.0015 Score=47.75 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=45.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccE-EEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i-~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
.+.++| ++|..+.-.||.++|+.| |-+ |.+.+. ..|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~f----ggv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAF----GNIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTS----EEEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhcc----CCEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 456777 999999999999999999 644 555432 589999999999999999775
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.57 E-value=0.0032 Score=46.09 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=54.7
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---e----CC-cceEEEEeCCHHHHHHHHHHhcCceeCCCCCC--
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K----GE-KPMGFALFSTAQLAVAAKDALQEMIFDAETKS-- 118 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~----~~-kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr-- 118 (328)
.-+|.|+.||..+||+++.+.+..+.. +.-... + .. -.-|+|.|.+.++...-.+.++|..|.+..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 457999999999999998888877632 111111 1 11 16799999999999999999999999554453
Q ss_pred eEEEEEcc
Q 020297 119 VLHTEMAK 126 (328)
Q Consensus 119 ~l~v~~a~ 126 (328)
+-.|+||-
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 33466663
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.0072 Score=44.21 Aligned_cols=77 Identities=12% Similarity=0.288 Sum_probs=56.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCC------cceEEEEEccHHHHHHHHHHhCCCeeCCCCCc--ee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV--GM 294 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~--~l 294 (328)
.-.|.|+.||+.+||+++.+.++..-++.....+..+- -.-|+|.|.+.++...-.+.++|+.+.++... +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35699999999999999988888765554443332111 23689999999999999999999999763211 34
Q ss_pred EEEee
Q 020297 295 RIQYS 299 (328)
Q Consensus 295 ~V~~a 299 (328)
.|+||
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.88 E-value=0.0044 Score=58.56 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHH
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ 280 (328)
.++|||. .+..+++.+|.+.|++||.|.++.+.. ..+.|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 4799997 788999999999999999999998874 3347999999999999977553
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.79 E-value=0.012 Score=45.36 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEEe--------------c---CCcceEEEEEccHHHHHHHHHHhCCC
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLR--------------Q---ERHTVCFIEFEDVNSASSVHHNLQGA 284 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~-v~i~~--------------~---~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (328)
..-|.|-+.|+.. ...+.+.|++||.|++ +...+ - .+.++--|+|.+..+|.+||+ -||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3567788888775 4566689999999876 21110 0 135788999999999999998 6999
Q ss_pred eeCCCCCceeEEEee
Q 020297 285 VIPSSGSVGMRIQYS 299 (328)
Q Consensus 285 ~i~g~~~~~l~V~~a 299 (328)
.|.| .-|=|.+.
T Consensus 85 ii~G---~mIGV~Py 96 (132)
T 3p3d_A 85 VFNG---VLLGVIPY 96 (132)
T ss_dssp EETT---EECEEEEC
T ss_pred EeCc---EEEEEEEC
Confidence 9998 66666654
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.85 E-value=0.13 Score=39.02 Aligned_cols=71 Identities=8% Similarity=0.007 Sum_probs=55.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeC--CcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEc
Q 020297 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (328)
Q Consensus 48 ~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~--~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a 125 (328)
..+-|.|=+.|... ...|-+.|+.| |.|++... ....-.|.|.+..+|++||. .||..+.. +-.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g--~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGE--SIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETT--TEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecC--CEEEEEEEC
Confidence 46789999999986 46667789999 99988753 45899999999999999998 89999961 233445554
Q ss_pred c
Q 020297 126 K 126 (328)
Q Consensus 126 ~ 126 (328)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.67 E-value=0.065 Score=50.58 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=37.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEE--ee-CCcceEEEEeCCHHHHHHHHH
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YK-GEKPMGFALFSTAQLAVAAKD 105 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~--~~-~~kg~aFV~F~~~~~A~~A~~ 105 (328)
.|+|||. .+..+++.+|.+.|+.| |.|.. +. ...-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 6899998 79999999999999999 87733 33 334799999999999987654
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.35 E-value=1.5 Score=41.91 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
...++|+ +|..++..+|.++|+.| |.+....-+...|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4577887 99999999999999999 6542222334689999999999999999885
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.15 E-value=1 Score=43.11 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
..|+|+ ++..+...+|.++|+.||.| +|+.+. ...|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 466776 88888999999999999954 555553 3679999999999999999985
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.50 E-value=0.95 Score=34.77 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=51.6
Q ss_pred cceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEe---e-------------------CCcceEEEEeCCHHHHHHHHHH
Q 020297 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-------------------GEKPMGFALFSTAQLAVAAKDA 106 (328)
Q Consensus 49 ~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~---~-------------------~~kg~aFV~F~~~~~A~~A~~~ 106 (328)
..-|.|=+.|.+.+. .+-+.|++| |.|++- . .....--|+|.+..+|.+||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 456778888877664 455689999 888662 0 013667999999999999998
Q ss_pred hcCceeCCCCCCeEEEEEcc
Q 020297 107 LQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 107 l~g~~~~~~~gr~l~v~~a~ 126 (328)
.||..|. |.-|-|.+..
T Consensus 81 ~NG~ii~---G~mIGV~Py~ 97 (132)
T 3p3d_A 81 ENGAVFN---GVLLGVIPYT 97 (132)
T ss_dssp TTTCEET---TEECEEEECC
T ss_pred hCCeEeC---cEEEEEEECC
Confidence 9999997 7777777664
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.60 E-value=1.9 Score=29.39 Aligned_cols=67 Identities=12% Similarity=0.320 Sum_probs=45.0
Q ss_pred eEEEeCCC--CCCCHHHHHHHhccCCC-----eeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020297 225 TLFIGNLG--ESINEEELRGLFSAQPG-----FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (328)
Q Consensus 225 ~LfV~NL~--~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~g~~~~~l~V~ 297 (328)
+||| |+. ..++..+|...++.-+. |-.++|.. .|.||+-. .+.|..+++.|++..+.| +.++|+
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~-~~~~~~~~~~l~~~~i~g---~~~~v~ 72 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEIL-NGKGPHVLKVMKNTTVKG---KQLKVN 72 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEEC-TTCHHHHHHHHTTCCC------CCCEE
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEEC-HHHHHHHHHHhccccCcC---ceEEEE
Confidence 5777 333 35777788877776654 56677753 58899865 566889999999999999 899998
Q ss_pred eec
Q 020297 298 YSK 300 (328)
Q Consensus 298 ~ak 300 (328)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 404
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=75.74 E-value=2 Score=28.59 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.4
Q ss_pred CcccEEEeeCCcceEEEEeCC
Q 020297 76 YEASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 76 ~~g~i~~~~~~kg~aFV~F~~ 96 (328)
++|.|+++...+|.++|.|+|
T Consensus 30 Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 30 YLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred EEeEEEEEccCCcEEEEEEcc
Confidence 568889998888999999977
No 405
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.98 E-value=2.6 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.8
Q ss_pred CcccEEEeeCCcceEEEEeCC
Q 020297 76 YEASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 76 ~~g~i~~~~~~kg~aFV~F~~ 96 (328)
+.|.|+++...++.+||+|+|
T Consensus 26 YlGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 26 YLGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred EEeEEEEEecCCcEEEEEEcc
Confidence 347888888888999999977
No 406
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=71.26 E-value=3.4 Score=28.22 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.5
Q ss_pred CcccEEEeeCCcceEEEEeCC
Q 020297 76 YEASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 76 ~~g~i~~~~~~kg~aFV~F~~ 96 (328)
+.|.|+++...++.+||.|+|
T Consensus 43 YLGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 43 YLGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp CEEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEeccCCCEEEEEEcC
Confidence 458999999889999999987
No 407
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.85 E-value=2 Score=28.09 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=16.5
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|+++...+..|||.|+|
T Consensus 25 lgtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 25 LGKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp EEEECCCCSTTSEEEEEETT
T ss_pred EEEEEEEecCCCEEEEEEcc
Confidence 36777777778999999977
No 408
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=63.81 E-value=5.5 Score=25.68 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.8
Q ss_pred CcccEEEeeCCcceEEEEeCC
Q 020297 76 YEASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 76 ~~g~i~~~~~~kg~aFV~F~~ 96 (328)
+-|.|+++...++.++|.|+|
T Consensus 20 YlGtI~~V~~~~~~clV~F~D 40 (58)
T 4hcz_A 20 YLGTIKKVDSAREVCLVQFED 40 (58)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEEecCCCEEEEEEcC
Confidence 347889988888899999977
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=58.22 E-value=2.3 Score=33.47 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCcccEEEeeCCcceEEEEeC
Q 020297 64 RELQNLLRWLPGYEASQVNYKGEKPMGFALFS 95 (328)
Q Consensus 64 ~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~ 95 (328)
+|+.++|... |.|..+...|||+||.-.
T Consensus 2 ~~~~~l~~~~----G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA----GICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE----EEEEEEETTTTEEEEEEE
T ss_pred Ccccccccce----eEEEEEECCCCeeEEeeC
Confidence 4555666666 888888889999999975
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.35 E-value=64 Score=21.37 Aligned_cols=72 Identities=7% Similarity=0.085 Sum_probs=43.2
Q ss_pred eEEEcCCC-CcCCHHHHHHHHHhCCCCccc-EEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCCCCCCeEEEEEcc
Q 020297 51 TIFITGLP-DDVKERELQNLLRWLPGYEAS-QVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (328)
Q Consensus 51 ~LfV~nLp-~~~te~~L~~~f~~~~~~~g~-i~~~~~~kg~aFV~F~~~~~A~~A~~~l~g~~~~~~~gr~l~v~~a~ 126 (328)
+|||..=- ..+..-+|..++..-.+..+. |=.++-.-.|.||+-... .|..+++.|++..+. |+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~---g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVK---GKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC------CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCc---CceEEEEECC
Confidence 45553222 337777888888877554433 322222336899988654 477788889999987 8999887663
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.99 E-value=81 Score=22.16 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=46.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhC
Q 020297 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (328)
Q Consensus 222 ~~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (328)
.++.+-|-|+|..+-..|+--.....|---.++.+. |.|.|+|.+.++...|++.|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHH
Confidence 367778889999888888766666778777777774 789999999999999999873
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.18 E-value=45 Score=26.65 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=40.3
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEEecCC-cceEEEEEccH-HHHHHHHHHhCCCeeCC
Q 020297 225 TLFIGNLGE-S--------INEEELRGLF--SAQPGFKQMKVLRQER-HTVCFIEFEDV-NSASSVHHNLQGAVIPS 288 (328)
Q Consensus 225 ~LfV~NL~~-~--------~te~~L~~~F--~~~G~i~~v~i~~~~~-~g~aFV~F~~~-~~A~~Al~~lnG~~i~g 288 (328)
++.|-|++. . ....+|++.| ..|..++...+....+ +|+++|.|.+- .-=..|+..=+-++..+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~ 90 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDG 90 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 566778875 2 3457999977 9999877665553333 78999999753 33334544333344443
No 413
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=39.65 E-value=21 Score=23.53 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.8
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||.=.+
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEECCCCEEEEecCC
Confidence 36777778889999999754
No 414
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.56 E-value=1.1e+02 Score=21.50 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=43.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHHhCCCCcccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~~~~~~~g~i~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 108 (328)
..++-+-|=|+|..+-..++.-..... |--.-+.--.|.|.|.|.+.++-+.|++.|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhl----gyefycdyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHL----GYEFYCDYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTT----CCCEEEEECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhc----CeeEeeeeecCeeEEEecCChHHHHHHHHHH
Confidence 346777888999998888877666655 4333333234899999999999999998763
No 415
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=35.50 E-value=30 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.0
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||+=.+
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCEEEEecCC
Confidence 36777778889999998754
No 416
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=35.47 E-value=24 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.164 Sum_probs=15.1
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6677777889999999654
No 417
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=34.61 E-value=26 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.1
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEECCCCeEEEecCC
Confidence 6677777889999998754
No 418
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=33.54 E-value=32 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.9
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||.=.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36777778889999998765
No 419
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=33.03 E-value=28 Score=23.45 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.2
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 6677778889999998654
No 420
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.60 E-value=1.4e+02 Score=22.34 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.5
Q ss_pred HHHHHHhccCC-CeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCeeC
Q 020297 238 EELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (328)
Q Consensus 238 ~~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i~ 287 (328)
.++.+++...| .|..+.......+....|++.+.+.|.++|.. +|+.+.
T Consensus 87 a~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 87 AKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 56667777777 56565444224467778899999999999886 777764
No 421
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.45 E-value=30 Score=23.70 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=14.8
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||+=.+
T Consensus 11 G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEETTTTEEEEEEGG
T ss_pred eEEEEEECCCCcEEEecCC
Confidence 6666677889999999643
No 422
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=27.79 E-value=40 Score=26.24 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.9
Q ss_pred CcccEEEeeCCcceEEEEeCC
Q 020297 76 YEASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 76 ~~g~i~~~~~~kg~aFV~F~~ 96 (328)
..|.|..+...||||||.-.+
T Consensus 63 ~~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESS
T ss_pred cceEEEEEeCCCCeEEeccCC
Confidence 347777778889999999865
No 423
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.23 E-value=1.2e+02 Score=19.24 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEccHHHHHHHHHHhCCCee
Q 020297 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (328)
Q Consensus 223 ~~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~i 286 (328)
..++.|.++.-.-=...|...+.. ..|..+.+- ...+.+.|.|.+.+.-..+|+. -|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~--~~~~~~~v~~~~~~~i~~~i~~-~Gy~~ 65 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVD--LNEAVVAGNKEDVDKYIKAVEA-AGYQA 65 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEEC--SSEEEEEEEGGGHHHHHHHHHH-TTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEE--ccCCEEEEEECCHHHHHHHHHH-cCCce
Confidence 357889999877667888899999 889888884 3346678888866666667765 35543
No 424
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.01 E-value=57 Score=21.71 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=15.9
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020297 77 EASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 77 ~g~i~~~~~~kg~aFV~F~~ 96 (328)
.|.|..+...||||||.=.+
T Consensus 7 ~G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 7 KGNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEECCCCcEEEecCC
Confidence 37777777889999998754
No 425
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=24.92 E-value=32 Score=22.92 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=12.8
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|+. ..+..+||.|+|
T Consensus 34 GtIVd--~~~~~ClV~FeD 50 (69)
T 2xk0_A 34 GTIID--QTSDQYLIRFDD 50 (69)
T ss_dssp EEEEE--ECSSCEEEEETT
T ss_pred EEEEe--cCCceEEEEecC
Confidence 66644 457899999977
No 426
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.66 E-value=61 Score=16.74 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHhCCC
Q 020297 61 VKERELQNLLRWLPG 75 (328)
Q Consensus 61 ~te~~L~~~f~~~~~ 75 (328)
-.|.+|++++++|.+
T Consensus 13 rnekelrdfiekfkg 27 (28)
T 1fme_A 13 RNEKELRDFIEKFKG 27 (28)
T ss_dssp CCHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHhcC
Confidence 358899999999843
No 427
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.56 E-value=50 Score=23.30 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=11.2
Q ss_pred ccEEEeeCCcceEEEE
Q 020297 78 ASQVNYKGEKPMGFAL 93 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~ 93 (328)
|.|-.+...|||+||+
T Consensus 11 G~VKWFn~~KGfGFI~ 26 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFIS 26 (90)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred eEEEEeeCCCCeEEeE
Confidence 4444446778999996
No 428
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.46 E-value=51 Score=18.05 Aligned_cols=20 Identities=45% Similarity=0.792 Sum_probs=13.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHH
Q 020297 47 DEVRTIFITGLPDDVKERELQNLLR 71 (328)
Q Consensus 47 ~~~~~LfV~nLp~~~te~~L~~~f~ 71 (328)
...|+|||++-| ++|+.+-+
T Consensus 3 gqvrtiwvggtp-----eelkklke 22 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLKE 22 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHHH
Confidence 357899999864 56665544
No 429
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=22.66 E-value=1.2e+02 Score=22.77 Aligned_cols=35 Identities=3% Similarity=0.020 Sum_probs=20.4
Q ss_pred CCCeeEEEEEecCCcceEEEE-EccHHHHHHHHHHh
Q 020297 247 QPGFKQMKVLRQERHTVCFIE-FEDVNSASSVHHNL 281 (328)
Q Consensus 247 ~G~i~~v~i~~~~~~g~aFV~-F~~~~~A~~Al~~l 281 (328)
+=.|..|++..+......||. |.+.++...+++.|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 347889999765555566666 55544433343333
No 430
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.50 E-value=66 Score=18.51 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=13.0
Q ss_pred CcCCHHHHHHHHHhC
Q 020297 59 DDVKERELQNLLRWL 73 (328)
Q Consensus 59 ~~~te~~L~~~f~~~ 73 (328)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 568999999999876
No 431
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.20 E-value=1.6e+02 Score=18.09 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=38.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCeeEEEEEecCCcceEEEEEcc---HHHHHHHHHH
Q 020297 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFED---VNSASSVHHN 280 (328)
Q Consensus 224 ~~LfV~NL~~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~---~~~A~~Al~~ 280 (328)
.++.|.++.-.--...+...+.....|..+.+- ...+-+.|.|.+ .+.-..+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~--~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN--FALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE--TTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE--ecCCEEEEEECCCCCHHHHHHHHHH
Confidence 457788888765567888899999899988885 345678898843 3444455553
No 432
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=24.47 E-value=24 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.6
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020297 78 ASQVNYKGEKPMGFALFST 96 (328)
Q Consensus 78 g~i~~~~~~kg~aFV~F~~ 96 (328)
|.|..+...||||||.=.+
T Consensus 7 G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 7 GKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 6666667778999998655
Done!