BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020298
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana
GN=At3g17611 PE=2 SV=1
Length = 334
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/333 (68%), Positives = 272/333 (81%), Gaps = 6/333 (1%)
Query: 1 MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSI 60
ME G G R GMLPLLAL A EY+RLPWKPPVTA+LLA NTL+YLRPAF+D ++P I
Sbjct: 1 MENFGEGRRSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHI 60
Query: 61 HEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVV 120
EVWFNPHLI K+KDLKR FLS FYH +E HL YNMMSLLWKGI+LETSMGS+EFA+MV
Sbjct: 61 SEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVF 120
Query: 121 ALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLL 180
L+GMSQG+TLLLAKSL+L FDY+RAYY+EYAVGFSGVLFAMKVVLNS++EDY++V+G+L
Sbjct: 121 TLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGIL 180
Query: 181 VPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVL 240
VP +YAAWAELI++QMFVP SFLGHLGGILAGI+YLKLKG YSGSDP+T +RG + ++
Sbjct: 181 VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLV 240
Query: 241 SWPLRFARYLF--RRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
+WPLRF + RR RI GRG VG T P IWRC +CT+DNSGWLS CEMCG+ R
Sbjct: 241 TWPLRFLNGMVRSRRRRITGRGRVGRGQTGIAGPGIWRCQSCTYDNSGWLSACEMCGSGR 300
Query: 299 S-GNDLSSDQ---LSRHSNIPLEELRHRRIERF 327
+ GN S +Q LS +++PL+ELR RR+ERF
Sbjct: 301 ARGNGWSLNQGPALSSSNDLPLDELRRRRVERF 333
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 116/211 (54%), Gaps = 18/211 (8%)
Query: 33 PPVTAALLATNTLIYLRPAF-LDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESH 91
PPVT A LA N +L P L S S+ + + + KD +R LSP +HA + H
Sbjct: 28 PPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY-------QQKDWQRLLLSPLHHADDWH 80
Query: 92 LFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEY 151
L++NM S+LWKGI LE +GS FA ++ A ++ + LLL ++ F D E +
Sbjct: 81 LYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMD-EPDFKRSC 139
Query: 152 AVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGI 210
AVGFSGVLFA+KV+ N + N+ G VP R+A W EL+ I +F PG SF GHL GI
Sbjct: 140 AVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGI 199
Query: 211 LAGILYLKLKGGYSGSDPLTTIIRGATGVLS 241
L G++Y + PL I+ G S
Sbjct: 200 LVGLMYTQ--------GPLKKIMEACAGGFS 222
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 33 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHL 92
PPVT A LA N +L P P H + + KD +R LSP +H + HL
Sbjct: 28 PPVTLATLAVNVWFFLNP-----WKPLYHSC-ISVEKCYQQKDWQRLLLSPLHHGDDWHL 81
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
++NM+S+LWKG++LE +GS F A V+A + G+ LL + V + + A
Sbjct: 82 YFNMVSMLWKGVKLERRLGSRWF-AYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCA 140
Query: 153 VGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGIL 211
VGFSGVLFA+KV+ N + N+ G VP R+A WAEL+ I PG SF GHL GIL
Sbjct: 141 VGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELVAIHFCTPGTSFAGHLAGIL 200
Query: 212 AGILYLKLKGGYSGSDPLTTIIRGATGVL 240
G++Y + PL I+ G+
Sbjct: 201 VGLMYTQ--------GPLKKIMDTCAGIF 221
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1
Length = 318
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 113/209 (54%), Gaps = 18/209 (8%)
Query: 33 PPVTAALLATNTLIYLRPAF-LDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESH 91
PPVT A LA N +L P L S S+ + + + +D +R LSP +HA + H
Sbjct: 28 PPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY-------QQRDWQRLLLSPLHHADDWH 80
Query: 92 LFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEY 151
L++N S+LWKGI LE +GS FA ++ ++ + LLL ++ F D E +
Sbjct: 81 LYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMD-EPDFKRSC 139
Query: 152 AVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGI 210
AVGFSGVLFA+KV+ N + N+ G VP R+A W EL+ I +F PG SF GH GI
Sbjct: 140 AVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSFAGHQAGI 199
Query: 211 LAGILYLKLKGGYSGSDPLTTIIRGATGV 239
L G++Y + PL I+ G+
Sbjct: 200 LVGLMYTQ--------GPLKKIMEACAGL 220
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 33 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHL 92
PPVT A LA N +L P P H + + D +R LSP +H + HL
Sbjct: 28 PPVTLATLAVNVWFFLNP-----WKPLYHSC-ISVEKCYQQNDWQRLLLSPVHHGDDWHL 81
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
++NM+S+LWKG++LE +GS F A ++A + G+ LL + + + A
Sbjct: 82 YFNMVSMLWKGVKLEKRLGSRWF-AYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCA 140
Query: 153 VGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGIL 211
VGFSGVLFA+KV+ N + N+ G VP R+A WAEL I PG SF GHL GIL
Sbjct: 141 VGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSFAGHLAGIL 200
Query: 212 AGILYLKLKGGYSGSDPLTTIIRGATGVL 240
G++Y + PL I+ G+
Sbjct: 201 VGLMYTQ--------GPLKKIMDACAGIF 221
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 9/189 (4%)
Query: 33 PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHL 92
P +T++++ +IYL L + + +EV F P I+ + RF+ + +H S H+
Sbjct: 23 PFLTSSVVVVCGVIYL--ICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHV 80
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLV---LFFDYERAYYS 149
+NMM+L+ G +LE MGS + V LL + + LL SL F+ Y+ +
Sbjct: 81 LFNMMALVPMGSELERIMGSVRLLYLTV-LLATTNAVLHLLIASLAGYNPFYQYDH-LMN 138
Query: 150 EYAVGFSGVLFAMKVVLNSRSEDYT-NVHGLL-VPARYAAWAELIIIQMFVPGVSFLGHL 207
E A+GFSG+LF+M V+ S S + +V GL VPA+ W LI+ Q+ + VS LGHL
Sbjct: 139 ECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHL 198
Query: 208 GGILAGILY 216
GIL+G Y
Sbjct: 199 CGILSGFSY 207
>sp|Q5UQ86|RHBDL_MIMIV Putative rhomboid protein L523 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L523 PE=3 SV=1
Length = 171
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 22/149 (14%)
Query: 74 KDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLL 133
++ + + FYHA+ HL N S LE MG +FA ++ + +S LLL
Sbjct: 27 SEIINYLIRTFYHANLQHLLANSFSFYMLSF-LEDVMGHAKFAFCIIFIWILSS--MLLL 83
Query: 134 AKSLVLFFDYERAYYSE--YAVGFSGVLFAMKVV-LNSRSEDYTNVHGLLVPARYAAWAE 190
A+ A+ S Y VGFSGV+F + VV L S ++ GL + A
Sbjct: 84 AE--------HTAFPSRKVYTVGFSGVIFGLIVVYLMSLGKN----RGLSI----AGLVL 127
Query: 191 LIIIQMFVPGVSFLGHLGGILAGILYLKL 219
II Q FV G+S+ GH+ G++AG +Y+ L
Sbjct: 128 SIIPQFFVSGISYEGHICGMIAGFVYVVL 156
>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RBD2 PE=3 SV=1
Length = 271
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 40 LATNTLIYLRPAFL-DSLVPSIHE-VWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMM 97
LA I+L FL ++LV I+E + P + K+ DL R L P H S HLF+N++
Sbjct: 17 LAVGLSIFLTALFLVNNLVYPINEHLLLKPDSLFKF-DLNRISLYPLAHLSFFHLFFNVI 75
Query: 98 SLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSG 157
S + E S G+ + +++ LL + I L SL LF + E S + F G
Sbjct: 76 STFSMIVMFEESHGT-LYTGVILNLLAVFTAIPYCLIGSL-LFPNVEIGGASGWFFSFLG 133
Query: 158 VLFAMKVVLNSRSEDYTNVHGLL-VPARYAAWAELIIIQMFVPGVSFLGHLGGILAG 213
FA+K SR + + P Y A L + + PG S GH G+L G
Sbjct: 134 Y-FAVK---ESRVRNSVMITSTFSFPTLYFPVALLFVTALLAPGSSLPGHAIGLLLG 186
>sp|Q755H8|RBD2_ASHGO Rhomboid protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RBD2 PE=3 SV=1
Length = 261
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 35 VTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFY 94
+TA L TL+Y+ L+ + P ++ +P + K + L R L P H S HL
Sbjct: 17 LTAGLSVFLTLVYV----LNWVFPINEKILLDPGALRKLQ-LTRLSLYPLAHLSIFHLLL 71
Query: 95 NMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVG 154
N+MSL E S G+ F + + LL + G+ L L+ Y + Y G
Sbjct: 72 NLMSLFVPLSMFEASHGT-VFTGITLNLLAIVTGVVYCLVGMLL--------YPNVYVGG 122
Query: 155 FSGVLFAMK---VVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGIL 211
SG F + V + + + L +P Y L+++ + +PG SF+GHL G+
Sbjct: 123 ASGWCFTLCGYFAVQEAGFRPHYELASLKMPTLYIPLVFLVLVTLLMPGSSFVGHLIGLG 182
Query: 212 AGIL 215
G L
Sbjct: 183 LGYL 186
>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RBD2 PE=1 SV=1
Length = 262
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 10/179 (5%)
Query: 38 ALLATNTLIYLRPAFLDSLVPSIHE-VWFNPHLILKYKDLKRFFLSPFYHASESHLFYNM 96
A L T +++L +L S + ++ E + P + K + + R L P H S HL +N+
Sbjct: 15 AALTTGLVVFLTAIYLLSFIFALREDLSLAPESLFKLQ-MSRLSLYPLIHLSLPHLLFNV 73
Query: 97 MSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFS 156
+++ W + L + + + L + GI L L+ Y A + A G+
Sbjct: 74 LAI-WAPLNLFEETHGTVYTGVFLNLSALFAGILYCLLGKLL----YPEALVAG-ASGWC 127
Query: 157 GVLFAMKVVLNSRSEDYTNVH--GLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAG 213
LFA S+ T + +P Y L+ I + +PG SF GH G+ G
Sbjct: 128 FTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWGHFFGLCVG 186
>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3
SV=2
Length = 286
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 75 DLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLA 134
DL R +H +H N++ L E + G+ F + + +L ++ G+ +
Sbjct: 61 DLNRLSFYLLFHRGFTHWLLNVVGLFSPLAIFERTNGT-VFTGVTLNVLAVTAGLQFCIV 119
Query: 135 KSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNV--------HGLLVPARYA 186
L+ Y + +G SGV+F+ + + T V + +P Y+
Sbjct: 120 GKLL--------YPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLYS 171
Query: 187 AWAELIIIQMFVPGVSFLGHLGGILAGIL 215
+ LI+ + +PG SF GHL GI +G L
Sbjct: 172 PFIFLIVCMVLIPGSSFWGHLAGISSGYL 200
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 83 PFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLG-MSQGITLLLAKSLVLFF 141
PF H H F N+++L + E G+ A+ + L GI +L+ K ++
Sbjct: 72 PFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEKFIL--- 128
Query: 142 DYERAYYSEYAVGFSGVLFAM---KVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFV 198
R+ + VG S +F + + + +S Y ++ +P + ++ +FV
Sbjct: 129 ---RS--NTAVVGASVWIFLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFV 183
Query: 199 PGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYG 258
P SFLGHL I+ G YL G P I+R G L+ R Y+ + YG
Sbjct: 184 PNTSFLGHLSAIIIG--YLLGLGYLKVFVPPEKILRWIEGKLNLLGRLPHYVSVDQKTYG 241
Query: 259 R 259
R
Sbjct: 242 R 242
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Query: 23 FNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLS 82
F ++ + PP L+ I+L FL S VW L L+ L F L+
Sbjct: 7 FQKFQKAIQHPPA----LSLGLPIFLTVIFLLSQ----RYVWIEDDLELRSTALTNFELN 58
Query: 83 -----PFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSL 137
P HA+ HL N+++L Q E G+ +V+ +L + I L S+
Sbjct: 59 RISFYPLVHATWFHLLLNLVALQPIVSQFERVNGTVR-TGIVLNILAVVTAIPWCLL-SI 116
Query: 138 VLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMF 197
F D S + F G +A++ +S+ L+VP L++I +
Sbjct: 117 GFFPDEAVLGSSAWIFSFMG-YWAIRE--SSKQPTTQLAPNLVVPTWLLPIIYLVVIAIV 173
Query: 198 VPGVSFLGHLGGILAG 213
+P SF+GHL G++AG
Sbjct: 174 IPSSSFIGHLLGLIAG 189
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2
Length = 1594
Score = 38.1 bits (87), Expect = 0.091, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W+CPACT+DN +C++C + R
Sbjct: 931 WQCPACTYDNCAASVVCDICSSPR 954
>sp|Q8TAT6|NPL4_HUMAN Nuclear protein localization protein 4 homolog OS=Homo sapiens
GN=NPLOC4 PE=1 SV=3
Length = 608
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 254 PRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRS 299
P ++ G VGGS TA +W C CTF N CEMC R+
Sbjct: 564 PGLHEYGAVGGSTHTATA-AMWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|Q924T7|RNF31_MOUSE E3 ubiquitin-protein ligase RNF31 OS=Mus musculus GN=Rnf31 PE=1
SV=2
Length = 1066
Score = 36.6 bits (83), Expect = 0.26, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 272 PIIWRCPACTFDNSGWLSICEMCGTSR 298
P +W C CTF NSG + +C MC +R
Sbjct: 404 PQVWYCDHCTFCNSGPVWVCAMCNRTR 430
>sp|Q9ES54|NPL4_RAT Nuclear protein localization protein 4 homolog OS=Rattus norvegicus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 254 PRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRS 299
P ++ G VGGS R +W C CTF N CEMC R+
Sbjct: 564 PGLHEFGAVGGS-ARAATSAMWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|E1BDF2|SHRPN_BOVIN Sharpin OS=Bos taurus GN=SHARPIN PE=3 SV=1
Length = 409
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W CP+CTF N+ CEMC T R
Sbjct: 342 WPCPSCTFINAPSRPGCEMCSTQR 365
>sp|P60670|NPL4_MOUSE Nuclear protein localization protein 4 homolog OS=Mus musculus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 254 PRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRS 299
P ++ G VGGS R +W C CTF N CEMC R+
Sbjct: 564 PGLHEFGAVGGS-ARAATSAMWACQHCTFMNQPGTGHCEMCSLPRT 608
>sp|E1BB03|ZRAB3_BOVIN DNA annealing helicase and endonuclease ZRANB3 OS=Bos taurus
GN=ZRANB3 PE=3 SV=3
Length = 1074
Score = 36.2 bits (82), Expect = 0.35, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLSRHSN 313
W+C CT+ N+ L CEMC R G D L++ N
Sbjct: 622 WQCAFCTYINNSVLPYCEMCENPRGGAVPQIDSLNQTQN 660
>sp|Q8VEK2|RHBD2_MOUSE Rhomboid domain-containing protein 2 OS=Mus musculus GN=Rhbdd2 PE=2
SV=1
Length = 361
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 150 EYAVGFSGVLFAMKVVLNSRSE-DYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLG 208
E A GF+ V FAM V + RS V G++VP+ W L+ +P SFL ++
Sbjct: 130 EDARGFTPVAFAMLGVTSVRSRMRRALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVS 188
Query: 209 GILAGILY 216
G+L G+ Y
Sbjct: 189 GLLIGLSY 196
>sp|Q9H0F6|SHRPN_HUMAN Sharpin OS=Homo sapiens GN=SHARPIN PE=1 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W CP+CTF N+ CEMC T R
Sbjct: 352 WSCPSCTFINAPDRPGCEMCSTQR 375
>sp|Q91WA6|SHRPN_MOUSE Sharpin OS=Mus musculus GN=Sharpin PE=1 SV=1
Length = 380
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W CP+CTF N+ CEMC T R
Sbjct: 345 WSCPSCTFINASNRPGCEMCSTQR 368
>sp|Q9EQL9|SHRPN_RAT Sharpin OS=Rattus norvegicus GN=Sharpin PE=1 SV=1
Length = 381
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W CP+CTF N+ CEMC T R
Sbjct: 346 WSCPSCTFINASNRPGCEMCSTQR 369
>sp|Q9W1A4|TAMO_DROME Protein tamozhennic OS=Drosophila melanogaster GN=tamo PE=1 SV=1
Length = 797
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 270 TAPIIWRCPACTFDNSGWLSICEMCGTSRSGN 301
T+P W C CTF N ICEMC S+ N
Sbjct: 737 TSPNEWSCSFCTFLNPDTKRICEMCCRSKDFN 768
>sp|Q8ZLH5|GLPG_SALTY Rhomboid protease GlpG OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=glpG PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B4SVM1|GLPG_SALNS Rhomboid protease GlpG OS=Salmonella newport (strain SL254) GN=glpG
PE=3 SV=2
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B4TKV0|GLPG_SALHS Rhomboid protease GlpG OS=Salmonella heidelberg (strain SL476)
GN=glpG PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B5R7J1|GLPG_SALG2 Rhomboid protease GlpG OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=glpG PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B5R383|GLPG_SALEP Rhomboid protease GlpG OS=Salmonella enteritidis PT4 (strain
P125109) GN=glpG PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B5FKE3|GLPG_SALDC Rhomboid protease GlpG OS=Salmonella dublin (strain CT_02021853)
GN=glpG PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B4TY77|GLPG_SALSV Rhomboid protease GlpG OS=Salmonella schwarzengrund (strain
CVM19633) GN=glpG PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|B5F8P0|GLPG_SALA4 Rhomboid protease GlpG OS=Salmonella agona (strain SL483) GN=glpG
PE=3 SV=2
Length = 276
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|Q57IV1|GLPG_SALCH Rhomboid protease GlpG OS=Salmonella choleraesuis (strain SC-B67)
GN=glpG PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMIACVLVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVA 121
+N++ + G +E +GS + + V
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITVV 180
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 254 PRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
P+ GRG P+ W+CP CTF N CEMC +R
Sbjct: 178 PQEPGRGQPDA--VPEPPPVGWQCPGCTFINKPTRPGCEMCCRAR 220
>sp|Q5FWF4|ZRAB3_HUMAN DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens
GN=ZRANB3 PE=1 SV=2
Length = 1079
Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLS 309
W+C CT+ N+ L CEMC T + + D L+
Sbjct: 625 WQCSLCTYINNSELPYCEMCETPQGSAVMQIDSLN 659
>sp|Q8Z229|GLPG_SALTI Rhomboid protease GlpG OS=Salmonella typhi GN=glpG PE=3 SV=1
Length = 276
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ ++Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVVVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|Q62921|HOIL1_RAT RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Rattus norvegicus GN=Rbck1 PE=1 SV=3
Length = 508
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 253 RPRIYGRGTVGGSDTR-RTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
+PR + G D + P+ W+CP CTF N CEMC +R
Sbjct: 174 KPRTHQE--TGQPDAAPESPPVGWQCPGCTFINKPTRPGCEMCCRAR 218
>sp|Q9WUB0|HOIL1_MOUSE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus
musculus GN=Rbck1 PE=1 SV=2
Length = 508
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 270 TAPIIWRCPACTFDNSGWLSICEMCGTSR 298
+ P+ W+CP CTF N CEMC +R
Sbjct: 190 SPPVGWQCPGCTFINKPTRPGCEMCCRAR 218
>sp|B5BHH5|GLPG_SALPK Rhomboid protease GlpG OS=Salmonella paratyphi A (strain AKU_12601)
GN=glpG PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ ++Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVVVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|Q5PLZ8|GLPG_SALPA Rhomboid protease GlpG OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=glpG PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ ++Y+ + + + W F+P +LK+ ++ R+F F H S H+
Sbjct: 95 PVTWIVMLACVVVYIAMSLIGDQTVMVWLAWPFDP--VLKF-EVWRYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|A9MMA7|GLPG_SALAR Rhomboid protease GlpG OS=Salmonella arizonae (strain ATCC BAA-731
/ CDC346-86 / RSK2980) GN=glpG PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+Y+ + + W F+P L ++ R+F F H S H+
Sbjct: 95 PVTWTVMVACVLVYIAMNLVGDQTVMVWLAWPFDPALKFEFW---RYFTHIFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYLGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAMKVVLNSRSE 171
G SGV++A+ + R E
Sbjct: 198 GGLSGVVYALMGYVWLRGE 216
>sp|Q6NZP1|ZRAB3_MOUSE DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus
GN=Zranb3 PE=1 SV=1
Length = 1069
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSRS 299
W+C CTF N+ L CEMC RS
Sbjct: 621 WQCGFCTFLNNPGLPYCEMCENPRS 645
>sp|Q96EP0|RNF31_HUMAN E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens GN=RNF31 PE=1
SV=1
Length = 1072
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 253 RPRI---YGRGTVGGSDTRRTAPII----WRCPACTFDNSGWLSICEMCGTSRSGNDLSS 305
RPR G GT G T P + W C +CTF+N +C +C R S
Sbjct: 325 RPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCTFENEAAAVLCSICERPRLAQPPSL 384
Query: 306 DQLSRHSNIPLEELRH 321
SR + I L+ L+
Sbjct: 385 VVDSRDAGICLQPLQQ 400
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rbd2 PE=3 SV=2
Length = 251
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 86 HASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYER 145
H S H+ +N +SLL Q E G+ + V + GI L+ L DY
Sbjct: 66 HLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFFLRKDYVS 125
Query: 146 AYYSEYAVGFSGVLFAM--KVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSF 203
G SG FA ++S + + +PA LI+ + VP SF
Sbjct: 126 I------AGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASF 179
Query: 204 LGHLGGILAG 213
+GH G + G
Sbjct: 180 IGHASGAVMG 189
>sp|Q9VBP9|NPL4_DROME Nuclear protein localization protein 4 homolog OS=Drosophila
melanogaster GN=CG4673 PE=1 SV=3
Length = 652
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSR 298
W C CTF N G L+ CE+C R
Sbjct: 629 WTCNHCTFINRGELTSCEICSLPR 652
>sp|Q4I4A4|RBD2_GIBZE Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620
/ FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 83 PFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFD 142
P H + H N+++L + ET G+ A+ L + +L + + +
Sbjct: 68 PLIHLNVIHAILNLLALTPLMERFETEHGTLTSLALFFGPLTSIPAVAYVLIERCIFRAN 127
Query: 143 YERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVS 202
+ S + L AM+ + +S + + + +P +++ +PG S
Sbjct: 128 HGVLGASMWVF----TLLAMESIQTYKSNPHFVIGSVNIPTWTTPLIMSLVVAALIPGTS 183
Query: 203 FLGHLGGI----LAGILYLKL 219
LGHL GI +AG Y KL
Sbjct: 184 LLGHLCGIAIGYVAGFGYAKL 204
>sp|E6ZIJ1|HOIL1_DICLA RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Dicentrarchus labrax GN=rbck1 PE=3 SV=1
Length = 707
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 275 WRCPACTFDNSGWLSICEMCGTSRSGN 301
W CP+CT+ N CE+C T+R N
Sbjct: 394 WSCPSCTYINKPTRPGCEICSTNRPEN 420
>sp|P37677|LYXK_ECOLI L-xylulose/3-keto-L-gulonate kinase OS=Escherichia coli (strain
K12) GN=lyx PE=1 SV=1
Length = 498
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 155 FSGVLFAMKVVLNSRSEDYTNVHGLLV---PARYAAWAELII----IQMFVPGVSFLGHL 207
+ GV+F+ LN E +T+VH L V PA W +++ +++ +P V G
Sbjct: 373 YEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCF 432
Query: 208 GGILAGILYLKLKGGYSGSD-----PLTTIIRGATGVLSWPLRFARY 249
G LA + + +S + P+ T++ T + ++ RY
Sbjct: 433 GAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRY 479
>sp|A8AQX4|GLPG_CITK8 Rhomboid protease GlpG OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=glpG PE=3 SV=1
Length = 276
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 34 PVTAALLATNTLIYLRPAFLDSLVPSIHEVW-FNPHLILKYKDLKRFFLSPFYHASESHL 92
PVT ++ L+++ + + + + W F+P L ++ R+F F H S H+
Sbjct: 95 PVTWLIMIACILVFVVMSIVGAQSVMVWLAWPFDPSLKFEFW---RYFTHAFMHFSLMHI 151
Query: 93 FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
+N++ + G +E +GS + + V I+ LL+ + ++ + +
Sbjct: 152 LFNLLWWWYIGGAVEKRLGSGKLIVITV--------ISALLSGYV------QQKFSGPWF 197
Query: 153 VGFSGVLFAM 162
G SGV++A+
Sbjct: 198 GGLSGVVYAL 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,362,152
Number of Sequences: 539616
Number of extensions: 5161250
Number of successful extensions: 12209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 12136
Number of HSP's gapped (non-prelim): 109
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)