Query 020298
Match_columns 328
No_of_seqs 338 out of 1552
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 1.5E-26 5.2E-31 200.0 17.3 171 31-220 2-178 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 4E-26 1.4E-30 199.8 12.8 170 31-220 7-183 (196)
3 2d9g_A YY1-associated factor 2 98.8 4.8E-09 1.7E-13 71.1 4.4 34 268-301 5-38 (53)
4 1nj3_A NPL4; NZF domain, rubre 98.6 1.2E-08 4.3E-13 61.4 2.3 26 273-298 5-30 (31)
5 3a9j_C Mitogen-activated prote 98.5 2.7E-08 9.1E-13 61.3 2.1 27 273-299 7-33 (34)
6 3b08_B Ranbp-type and C3HC4-ty 98.5 8.4E-08 2.9E-12 67.0 4.7 29 273-301 7-35 (64)
7 2crc_A Ubiquitin conjugating e 98.5 1.4E-07 4.6E-12 63.5 4.0 28 274-301 10-37 (52)
8 3gj3_B Nuclear pore complex pr 98.0 2E-06 7E-11 52.0 1.7 30 271-300 4-33 (33)
9 2ebr_A Nuclear pore complex pr 97.9 1.4E-05 4.8E-10 52.4 4.4 38 265-302 2-39 (47)
10 2ebq_A Nuclear pore complex pr 97.8 1.9E-05 6.6E-10 51.6 3.3 36 267-302 4-39 (47)
11 2ebv_A Nuclear pore complex pr 97.4 0.00022 7.5E-09 48.5 5.2 38 263-300 20-57 (57)
12 3gj5_B Nuclear pore complex pr 97.4 6.7E-05 2.3E-09 45.6 1.7 30 271-300 4-33 (34)
13 3gj7_B Nuclear pore complex pr 97.1 0.00015 5.2E-09 55.3 1.7 34 267-300 65-98 (98)
14 2lk0_A RNA-binding protein 5; 96.8 0.00053 1.8E-08 41.1 1.7 29 272-300 3-31 (32)
15 2k1p_A Zinc finger RAN-binding 96.7 0.0016 5.6E-08 39.3 3.6 30 271-300 3-32 (33)
16 1n0z_A ZNF265; zinc finger, RN 96.1 0.0064 2.2E-07 39.3 4.0 34 268-301 8-43 (45)
17 1w7p_D VPS36P, YLR417W; ESCRT- 96.1 0.001 3.5E-08 65.8 0.0 27 274-300 180-206 (566)
18 3gj8_B Nuclear pore complex pr 96.0 0.0023 7.7E-08 48.2 1.8 33 268-300 59-91 (92)
19 3gj7_B Nuclear pore complex pr 95.8 0.0016 5.5E-08 49.6 0.0 30 272-301 7-36 (98)
20 3gj8_B Nuclear pore complex pr 95.0 0.0042 1.4E-07 46.7 0.0 30 272-301 6-35 (92)
21 2cr8_A MDM4 protein; ZF-ranbp 93.6 0.12 4E-06 33.8 4.5 37 273-309 10-48 (53)
22 2c6a_A Ubiquitin-protein ligas 89.9 0.14 4.8E-06 32.8 1.7 28 273-300 12-39 (46)
23 3pwf_A Rubrerythrin; non heme 86.5 0.21 7.1E-06 41.7 1.2 27 273-299 137-164 (170)
24 2j9u_B VPS36, vacuolar protein 78.7 0.64 2.2E-05 33.0 1.0 30 270-299 13-51 (76)
25 1yuz_A Nigerythrin; rubrythrin 75.1 0.81 2.8E-05 39.2 0.9 27 273-299 170-197 (202)
26 1lko_A Rubrerythrin all-iron(I 72.1 0.7 2.4E-05 39.1 -0.3 26 274-299 155-182 (191)
27 6rxn_A Rubredoxin; electron tr 69.5 1.3 4.5E-05 28.5 0.6 27 273-299 3-41 (46)
28 2w0t_A Lethal(3)malignant brai 68.9 1.6 5.5E-05 27.6 0.9 21 283-303 1-21 (43)
29 1w7p_D VPS36P, YLR417W; ESCRT- 68.3 1.1 3.6E-05 44.4 0.0 31 269-299 112-151 (566)
30 2kn9_A Rubredoxin; metalloprot 63.2 2.6 8.9E-05 30.5 1.3 28 272-299 25-71 (81)
31 2kdx_A HYPA, hydrogenase/ureas 61.3 4 0.00014 31.5 2.2 29 271-299 70-101 (119)
32 1dx8_A Rubredoxin; electron tr 60.9 2.7 9.3E-05 29.5 1.0 27 273-299 6-51 (70)
33 1e8j_A Rubredoxin; iron-sulfur 59.7 7 0.00024 25.6 2.8 11 274-284 3-13 (52)
34 2v3b_B Rubredoxin 2, rubredoxi 58.0 2.5 8.4E-05 28.2 0.3 10 274-283 3-12 (55)
35 3a43_A HYPD, hydrogenase nicke 57.1 2.8 9.7E-05 33.5 0.6 29 271-299 67-118 (139)
36 4rxn_A Rubredoxin; electron tr 55.1 3.7 0.00013 27.3 0.8 10 274-283 3-12 (54)
37 1yyb_A Programmed cell death p 52.8 2.4 8.3E-05 23.9 -0.3 14 313-326 4-17 (27)
38 1s24_A Rubredoxin 2; electron 52.3 3.1 0.00011 30.5 0.1 30 270-299 31-79 (87)
39 1pft_A TFIIB, PFTFIIBN; N-term 46.9 12 0.0004 24.0 2.3 32 275-306 6-42 (50)
40 2yrk_A Zinc finger homeobox pr 45.2 3.6 0.00012 27.2 -0.4 19 288-306 13-37 (55)
41 1yk4_A Rubredoxin, RD; electro 42.1 5.6 0.00019 26.1 0.1 10 274-283 2-11 (52)
42 3j21_g 50S ribosomal protein L 40.3 11 0.00038 24.6 1.3 24 274-297 14-37 (51)
43 2apo_B Ribosome biogenesis pro 39.5 29 0.001 23.4 3.4 23 274-299 6-29 (60)
44 1dl6_A Transcription factor II 38.4 31 0.001 22.9 3.4 33 275-307 12-49 (58)
45 2epr_A POZ-, at HOOK-, and zin 32.0 38 0.0013 20.3 2.9 7 274-280 12-18 (48)
46 1qxf_A GR2, 30S ribosomal prot 31.4 18 0.00061 24.9 1.3 24 275-298 8-36 (66)
47 1h7b_A Anaerobic ribonucleotid 30.0 13 0.00046 36.9 0.6 51 274-324 540-603 (605)
48 2lo3_A SAGA-associated factor 28.1 19 0.00063 22.5 0.8 20 282-301 11-30 (44)
49 2ysm_A Myeloid/lymphoid or mix 27.4 44 0.0015 25.0 3.1 11 271-281 45-55 (111)
50 2eps_A POZ-, at HOOK-, and zin 27.2 59 0.002 20.0 3.3 25 273-297 11-50 (54)
51 2zjr_Z 50S ribosomal protein L 27.2 37 0.0013 22.8 2.3 29 270-299 26-54 (60)
52 2aus_D NOP10, ribosome biogene 26.6 59 0.002 21.9 3.2 22 274-298 5-27 (60)
53 3p8b_A DNA-directed RNA polyme 26.6 12 0.00042 26.9 -0.3 22 275-298 24-45 (81)
54 3j20_W 30S ribosomal protein S 26.5 28 0.00095 23.7 1.5 23 275-297 16-43 (63)
55 1ryq_A DNA-directed RNA polyme 26.5 19 0.00065 25.1 0.7 21 275-297 12-32 (69)
56 2lbz_A Thuricin17, thurincin H 25.8 27 0.00094 19.4 1.1 16 275-298 2-17 (31)
57 2d74_B Translation initiation 25.6 45 0.0015 26.7 2.9 30 275-304 105-141 (148)
58 2lcq_A Putative toxin VAPC6; P 25.0 21 0.00071 28.9 0.8 23 275-297 133-157 (165)
59 1g70_B RSG-1.2 peptide; peptid 24.6 47 0.0016 17.7 1.9 15 310-324 5-19 (26)
60 2akl_A PHNA-like protein PA012 23.9 26 0.00087 27.5 1.1 26 273-298 26-54 (138)
61 2jss_B Uncharacterized protein 23.6 26 0.0009 23.6 1.0 9 3-11 42-50 (62)
62 2cot_A Zinc finger protein 435 23.2 96 0.0033 20.5 4.0 26 272-297 16-55 (77)
63 3bvo_A CO-chaperone protein HS 23.2 89 0.003 26.3 4.5 52 271-322 10-65 (207)
64 3irb_A Uncharacterized protein 22.1 19 0.00064 28.8 -0.0 26 275-300 48-73 (145)
65 1vdd_A Recombination protein R 21.9 21 0.00071 30.8 0.2 26 274-301 54-79 (228)
66 1vda_A FMBP-1, fibroin-modulat 21.5 44 0.0015 18.0 1.4 12 316-327 2-13 (26)
67 1loi_A Cyclic 3',5'-AMP specif 21.5 22 0.00075 19.0 0.2 10 290-299 7-16 (26)
68 2kn0_A FN14; tweak, TNF recept 21.3 80 0.0027 21.2 2.9 28 276-305 20-47 (66)
69 3v43_A Histone acetyltransfera 21.2 54 0.0018 24.6 2.5 10 272-281 53-62 (112)
70 3jyw_9 60S ribosomal protein L 20.9 37 0.0013 23.7 1.4 14 270-283 40-53 (72)
71 3o36_A Transcription intermedi 20.9 1.6E+02 0.0054 23.9 5.6 24 271-294 39-63 (184)
72 3u5c_b RP61, YS20, 40S ribosom 20.4 47 0.0016 23.8 1.8 24 275-298 35-63 (82)
73 2f9i_B Acetyl-coenzyme A carbo 20.1 21 0.0007 32.0 -0.2 29 270-298 25-59 (285)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.94 E-value=1.5e-26 Score=199.98 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=124.2
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhcCchhhhcccccchhhhcccCCcchhccccccCCChhHHHHHHHHHHHHHHHHHhhh
Q 020298 31 WKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSM 110 (328)
Q Consensus 31 ~~P~vt~~li~i~v~v~ll~~~~~~~~~~~~~~~l~p~~i~~~~q~wRL~T~~f~H~~~~Hll~Nm~~L~~~G~~lE~~~ 110 (328)
|.||+|+.++++|+++|+++...+. .+..+++.++|..+ +++|+||++|++|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~-~~~~~~~~~~p~~~-~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGD-QEVMLWLAWPFDPT-LKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHSSCCSGG-GTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCc-HHHHHhhcCChhhc-cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999998765432 12245667888754 579999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHh---cCCCcceeeccchhhHHHH
Q 020298 111 GSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNS---RSEDYTNVHGLLVPARYAA 187 (328)
Q Consensus 111 G~~~f~~~yl~~~~~~~~l~~ll~~~l~~~~~~~~~~~~~~~~GaSg~ifgl~~~~~~---~~~~~~~~~~i~i~~~~~~ 187 (328)
|+.||+.+|+ .+++.+++... .+.+ ...+|+||++||++++... ..|+.. ..++.+.....
T Consensus 80 G~~~fl~~yl-~~~i~~~l~~~-------~~~~------~~~vGaSGai~gl~g~~~~~~~~~p~~~--~~l~~~~~~~~ 143 (181)
T 2xov_A 80 GSGKLIVITL-ISALLSGYVQQ-------KFSG------PWFGGLSGVVYALMGYVWLRGERDPQSG--IYLQRGLIIFA 143 (181)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHH-------HHHC------SCCCCSHHHHHHHHHHHHHHHHHCGGGS--CCCCHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHHHHH-------HhcC------CCceeHHHHHHHHHHHHHHHHhhCcCce--eeeHHHHHHHH
Confidence 9999999995 45565554321 2332 2389999999999987542 223221 11223322211
Q ss_pred HHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHh
Q 020298 188 WAELIIIQMF---VPGVSFLGHLGGILAGILYLKLK 220 (328)
Q Consensus 188 ~~~l~~~~~~---~~~vs~~aHl~G~l~G~ly~~~~ 220 (328)
.+. ++..+. .+++|+.+|++|+++|+++++..
T Consensus 144 ~~~-~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 144 LIW-IVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp HHH-HHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 111 122222 36899999999999999998763
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.93 E-value=4e-26 Score=199.77 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhcCchhhhcccccchhhhcccCCcchhccccccCCChhHHHHHHHHHHHHHHHHHhhh
Q 020298 31 WKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSM 110 (328)
Q Consensus 31 ~~P~vt~~li~i~v~v~ll~~~~~~~~~~~~~~~l~p~~i~~~~q~wRL~T~~f~H~~~~Hll~Nm~~L~~~G~~lE~~~ 110 (328)
+.||+|..++++|+++|+++...+. .+..+++.++|..+ .++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~-~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~ 84 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFE-DDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF 84 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCc-HHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998765432 12345677888766 578999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHh---cCCCcceeeccchhhHHHH
Q 020298 111 GSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNS---RSEDYTNVHGLLVPARYAA 187 (328)
Q Consensus 111 G~~~f~~~yl~~~~~~~~l~~ll~~~l~~~~~~~~~~~~~~~~GaSg~ifgl~~~~~~---~~~~~~~~~~i~i~~~~~~ 187 (328)
|+.||+.+|+ .+++.+++.. ..+.+ ...+|+||++||++++... ..++. ..++.+.....
T Consensus 85 G~~~~l~~yl-~~~~~~~l~~-------~~~~~------~~~vGaSGai~gl~g~~~~~~~~~~~~---~~~~~~~~~~~ 147 (196)
T 2nr9_A 85 GSVKLLMLYV-VASAITGYVQ-------NYVSG------PAFFGLSGVVYAVLGYVFIRDKLNHHL---FDLPEGFFTML 147 (196)
T ss_dssp CHHHHHHHHH-HHHHHHHHHH-------HHHHC------SCCCCSHHHHHHHHHHHHHHHHSSTTS---CCCCCSSTTTT
T ss_pred ChHHHHHHHH-HHHHHHHHHH-------HHhcC------CCeeeHHHHHHHHHHHHHHHHHhcchh---hcchHHHHHHH
Confidence 9999999995 4566555432 12332 2389999999999987543 12221 11222221111
Q ss_pred HHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHHh
Q 020298 188 WAELIIIQM----FVPGVSFLGHLGGILAGILYLKLK 220 (328)
Q Consensus 188 ~~~l~~~~~----~~~~vs~~aHl~G~l~G~ly~~~~ 220 (328)
.+. ++..+ ..+++|+.||++|+++|+++++..
T Consensus 148 ~~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 148 LVG-IALGFISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp TTT-TTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 000 11122 234899999999999999999763
No 3
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=4.8e-09 Score=71.10 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=29.6
Q ss_pred CCCCCCcccCCCCccCCCCCCccccccCCCCCCC
Q 020298 268 RRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 268 ~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
.....+.|.|+.|||.|++....||||+++|.++
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 3445567999999999999999999999999974
No 4
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.62 E-value=1.2e-08 Score=61.45 Aligned_cols=26 Identities=42% Similarity=0.951 Sum_probs=24.5
Q ss_pred CcccCCCCccCCCCCCccccccCCCC
Q 020298 273 IIWRCPACTFDNSGWLSICEMCGTSR 298 (328)
Q Consensus 273 g~W~c~~C~~~n~~~~~~c~~cg~~~ 298 (328)
+.|.|+.|||.|++....||||+.+|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999987
No 5
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.54 E-value=2.7e-08 Score=61.31 Aligned_cols=27 Identities=44% Similarity=0.865 Sum_probs=25.0
Q ss_pred CcccCCCCccCCCCCCccccccCCCCC
Q 020298 273 IIWRCPACTFDNSGWLSICEMCGTSRS 299 (328)
Q Consensus 273 g~W~c~~C~~~n~~~~~~c~~cg~~~~ 299 (328)
..|.|+.|||.|.+....||||+.+|.
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 369999999999999999999999975
No 6
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.53 E-value=8.4e-08 Score=67.02 Aligned_cols=29 Identities=41% Similarity=0.898 Sum_probs=26.5
Q ss_pred CcccCCCCccCCCCCCccccccCCCCCCC
Q 020298 273 IIWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 273 g~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
..|.|+.|||.|++..+.||||+++|.+.
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 36999999999999999999999998754
No 7
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=63.46 Aligned_cols=28 Identities=43% Similarity=0.884 Sum_probs=26.3
Q ss_pred cccCCCCccCCCCCCccccccCCCCCCC
Q 020298 274 IWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 274 ~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
.|.|+.|||.|.+..+.||||+.+|.+.
T Consensus 10 ~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 10 GWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 6999999999999999999999999864
No 8
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.99 E-value=2e-06 Score=52.05 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=25.5
Q ss_pred CCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 271 APIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
..|.|.|+.|++.|.++...|.+|.+++.+
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 456799999999999999999999999864
No 9
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.4e-05 Score=52.38 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=33.8
Q ss_pred CCCCCCCCCcccCCCCccCCCCCCccccccCCCCCCCC
Q 020298 265 SDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGND 302 (328)
Q Consensus 265 ~~~~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~~ 302 (328)
+...+..+|.|.|+.|...|.++...|.+|++++.+.+
T Consensus 2 ~~~fk~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 2 SSGSSGPEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp CSSCSSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred cccccCCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 45677788899999999999999999999999998764
No 10
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=51.59 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=31.7
Q ss_pred CCCCCCCcccCCCCccCCCCCCccccccCCCCCCCC
Q 020298 267 TRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGND 302 (328)
Q Consensus 267 ~~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~~ 302 (328)
..+..+|.|.|+.|.+.|.++...|.+|++++.+.+
T Consensus 4 ~~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 4 GSSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp SCCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CcCCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 345567789999999999999999999999998876
No 11
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00022 Score=48.51 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=33.1
Q ss_pred ccCCCCCCCCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 263 GGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 263 ~~~~~~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
+....++..+|.|.|+.|...|+++...|..|++++.+
T Consensus 20 gfg~~FK~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 20 GFGDKFKRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp SCCSCCCCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CHHHhcCCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 34566778889999999999999999999999998753
No 12
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=97.35 E-value=6.7e-05 Score=45.60 Aligned_cols=30 Identities=23% Similarity=0.649 Sum_probs=24.8
Q ss_pred CCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 271 APIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
.+|.|.|..|.+.|.++...|.+|.+++.+
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECCeeEeECccccCEEcccCCcCCC
Confidence 456799999999999999999999998765
No 13
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=97.10 E-value=0.00015 Score=55.31 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=25.9
Q ss_pred CCCCCCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 267 TRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 267 ~~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
.+....|.|.|+.|++.|.++...|.+|++++.+
T Consensus 65 ~fk~~~g~W~C~~C~~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 65 KFKPAIGTWDCDTCLVQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp ------CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred ccCCCCCcccCCcCcCCChhhcceecccCCCCCC
Confidence 3556678899999999999999999999999864
No 14
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=96.75 E-value=0.00053 Score=41.13 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=26.7
Q ss_pred CCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 272 PIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 272 ~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
.|.|.|+.|...|-+....|-.||.++.+
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 47799999999999999999999999875
No 15
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=96.69 E-value=0.0016 Score=39.26 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=27.0
Q ss_pred CCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 271 APIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
..|.|.|+.|...|-+....|-.|+.++.+
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCC
Confidence 356799999999999999999999999875
No 16
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=96.09 E-value=0.0064 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.589 Sum_probs=29.5
Q ss_pred CCCCCCcccCC--CCccCCCCCCccccccCCCCCCC
Q 020298 268 RRTAPIIWRCP--ACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 268 ~~~~~g~W~c~--~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
.+..+|.|.|+ .|...|-+....|-.|+.++.+.
T Consensus 8 ~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 8 FRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp CSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 34567789999 99999999999999999998764
No 17
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.05 E-value=0.001 Score=65.81 Aligned_cols=27 Identities=41% Similarity=0.827 Sum_probs=0.0
Q ss_pred cccCCCCccCCCCCCccccccCCCCCC
Q 020298 274 IWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 274 ~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
.-.|+.|||.|+|+...|||||.+-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 478999999999999999999987654
No 18
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=96.02 E-value=0.0023 Score=48.24 Aligned_cols=33 Identities=21% Similarity=0.575 Sum_probs=25.8
Q ss_pred CCCCCCcccCCCCccCCCCCCccccccCCCCCC
Q 020298 268 RRTAPIIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 268 ~~~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
.+...|.|.|+.|++.|.++...|..|++++.+
T Consensus 59 f~~~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 59 FKKPEGSWDCEVCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp -----CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred cCCCCCcccCCcCCcCChhhcccccccCCCCCC
Confidence 445678899999999999999999999999865
No 19
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.77 E-value=0.0016 Score=49.59 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCcccCCCCccCCCCCCccccccCCCCCCC
Q 020298 272 PIIWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 272 ~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
...|.|+.|++.|.++...|.+|+.+|...
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp ------------------------------
T ss_pred CCcccCCccccCChhhcccccccCCCCCCC
Confidence 446999999999999999999999999853
No 20
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=94.98 E-value=0.0042 Score=46.74 Aligned_cols=30 Identities=30% Similarity=0.669 Sum_probs=0.0
Q ss_pred CCcccCCCCccCCCCCCccccccCCCCCCC
Q 020298 272 PIIWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 272 ~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
.|.|.|+.|++.|.++...|..|+.++.+.
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~ 35 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPGL 35 (92)
T ss_dssp ------------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCCC
Confidence 467999999999999999999999999864
No 21
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=93.56 E-value=0.12 Score=33.83 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=29.8
Q ss_pred CcccCCCCccCCCCCCccccccCCCCCC--CCCCccccc
Q 020298 273 IIWRCPACTFDNSGWLSICEMCGTSRSG--NDLSSDQLS 309 (328)
Q Consensus 273 g~W~c~~C~~~n~~~~~~c~~cg~~~~~--~~~~~~~~~ 309 (328)
..|+|+.|.-.|.|....|+.|=.-|+| ...+-+.|+
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~~~ 48 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHS 48 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCSCS
T ss_pred ceeecccccccCCCccchhHHHHHhhcccCCCcccCccC
Confidence 3599999999999999999999999997 344444443
No 22
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=89.87 E-value=0.14 Score=32.76 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=25.8
Q ss_pred CcccCCCCccCCCCCCccccccCCCCCC
Q 020298 273 IIWRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 273 g~W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
..|+|+.|.-.|.|....|..|=.-|++
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred ceEecccccccCCCccchhhHHHhhccc
Confidence 4699999999999999999999998886
No 23
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=86.49 E-value=0.21 Score=41.70 Aligned_cols=27 Identities=22% Similarity=0.791 Sum_probs=20.6
Q ss_pred CcccCCCCccCC-CCCCccccccCCCCC
Q 020298 273 IIWRCPACTFDN-SGWLSICEMCGTSRS 299 (328)
Q Consensus 273 g~W~c~~C~~~n-~~~~~~c~~cg~~~~ 299 (328)
..|.|+.|.|.- ...+++|++||.+..
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 469999998862 334579999998754
No 24
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=78.72 E-value=0.64 Score=33.02 Aligned_cols=30 Identities=30% Similarity=0.674 Sum_probs=21.6
Q ss_pred CCCCcccCCCCccCCC---------CCCccccccCCCCC
Q 020298 270 TAPIIWRCPACTFDNS---------GWLSICEMCGTSRS 299 (328)
Q Consensus 270 ~~~g~W~c~~C~~~n~---------~~~~~c~~cg~~~~ 299 (328)
.....|.|+.|.+.|. ...+.|..||....
T Consensus 13 ~~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 13 DVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp --CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ccccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 3445699999997763 34567999998765
No 25
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=75.15 E-value=0.81 Score=39.16 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=20.3
Q ss_pred CcccCCCCccCCC-CCCccccccCCCCC
Q 020298 273 IIWRCPACTFDNS-GWLSICEMCGTSRS 299 (328)
Q Consensus 273 g~W~c~~C~~~n~-~~~~~c~~cg~~~~ 299 (328)
..|.|..|.|.-. ..+.+|+.||.+..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 4699999988732 22369999998754
No 26
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=72.12 E-value=0.7 Score=39.14 Aligned_cols=26 Identities=27% Similarity=0.910 Sum_probs=19.9
Q ss_pred cccCCCCccCCC--CCCccccccCCCCC
Q 020298 274 IWRCPACTFDNS--GWLSICEMCGTSRS 299 (328)
Q Consensus 274 ~W~c~~C~~~n~--~~~~~c~~cg~~~~ 299 (328)
.|.|..|.|.-. ..+++|+.||.+..
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 599999988732 23469999999754
No 27
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=69.49 E-value=1.3 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.704 Sum_probs=18.3
Q ss_pred CcccCCCCccCCCC----------CCc--cccccCCCCC
Q 020298 273 IIWRCPACTFDNSG----------WLS--ICEMCGTSRS 299 (328)
Q Consensus 273 g~W~c~~C~~~n~~----------~~~--~c~~cg~~~~ 299 (328)
..|+|..|.|.-.+ -.+ +|+.||.+.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGG
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcHH
Confidence 35999999875321 123 8999998643
No 28
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=68.92 E-value=1.6 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=16.3
Q ss_pred CCCCCCccccccCCCCCCCCC
Q 020298 283 DNSGWLSICEMCGTSRSGNDL 303 (328)
Q Consensus 283 ~n~~~~~~c~~cg~~~~~~~~ 303 (328)
|+++.+.+||+||.....+.|
T Consensus 1 ~~~~~~~~CE~CG~~g~~~~F 21 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIVGTREAF 21 (43)
T ss_dssp CCSCCEEECTTTCCEEETTTS
T ss_pred CCCCceehhhhhcCcchhhhh
Confidence 345667899999988777777
No 29
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=68.27 E-value=1.1 Score=44.41 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCccCCCC---------CCccccccCCCCC
Q 020298 269 RTAPIIWRCPACTFDNSG---------WLSICEMCGTSRS 299 (328)
Q Consensus 269 ~~~~g~W~c~~C~~~n~~---------~~~~c~~cg~~~~ 299 (328)
+.....|.|+.|.|.|.. ..+.|..||.+..
T Consensus 112 ~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 112 ADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp ----------------------------------------
T ss_pred cccccceeccccccCCCCCCCCCcccCCCCcccccCCCCc
Confidence 344567999999999974 3567999999875
No 30
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=63.18 E-value=2.6 Score=30.48 Aligned_cols=28 Identities=29% Similarity=0.718 Sum_probs=19.2
Q ss_pred CCcccCCCCccCCCC-----------------CCc--cccccCCCCC
Q 020298 272 PIIWRCPACTFDNSG-----------------WLS--ICEMCGTSRS 299 (328)
Q Consensus 272 ~g~W~c~~C~~~n~~-----------------~~~--~c~~cg~~~~ 299 (328)
...|+|..|-|.-.+ -.+ +|+.||.+..
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGG
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 446999999776322 122 7999998754
No 31
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=61.34 E-value=4 Score=31.51 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=21.6
Q ss_pred CCCcccCCCCccCC--CCCCc-cccccCCCCC
Q 020298 271 APIIWRCPACTFDN--SGWLS-ICEMCGTSRS 299 (328)
Q Consensus 271 ~~g~W~c~~C~~~n--~~~~~-~c~~cg~~~~ 299 (328)
.+..|+|..|.+.- ..... .|+.||.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 45679999997762 33456 8999999854
No 32
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.87 E-value=2.7 Score=29.49 Aligned_cols=27 Identities=19% Similarity=0.577 Sum_probs=18.5
Q ss_pred CcccCCCCccCCCC-----------------CCc--cccccCCCCC
Q 020298 273 IIWRCPACTFDNSG-----------------WLS--ICEMCGTSRS 299 (328)
Q Consensus 273 g~W~c~~C~~~n~~-----------------~~~--~c~~cg~~~~ 299 (328)
..|+|..|-|.-.+ -.+ +|+.||.+..
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~ 51 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKN 51 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGG
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHH
Confidence 45999999776322 122 7999998755
No 33
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=59.72 E-value=7 Score=25.64 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=8.1
Q ss_pred cccCCCCccCC
Q 020298 274 IWRCPACTFDN 284 (328)
Q Consensus 274 ~W~c~~C~~~n 284 (328)
.|+|..|.|.-
T Consensus 3 ~y~C~~CGyvY 13 (52)
T 1e8j_A 3 IYVCTVCGYEY 13 (52)
T ss_dssp CEECSSSCCCC
T ss_pred cEEeCCCCeEE
Confidence 48888887663
No 34
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=58.02 E-value=2.5 Score=28.21 Aligned_cols=10 Identities=40% Similarity=1.232 Sum_probs=7.3
Q ss_pred cccCCCCccC
Q 020298 274 IWRCPACTFD 283 (328)
Q Consensus 274 ~W~c~~C~~~ 283 (328)
.|+|..|.|.
T Consensus 3 ~y~C~~CGyv 12 (55)
T 2v3b_B 3 KWQCVVCGFI 12 (55)
T ss_dssp EEEETTTCCE
T ss_pred cEEeCCCCeE
Confidence 4888888665
No 35
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.11 E-value=2.8 Score=33.47 Aligned_cols=29 Identities=17% Similarity=0.618 Sum_probs=21.3
Q ss_pred CCCcccCCCCccCCC--C-----------C----------CccccccCCCCC
Q 020298 271 APIIWRCPACTFDNS--G-----------W----------LSICEMCGTSRS 299 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~--~-----------~----------~~~c~~cg~~~~ 299 (328)
.+..|+|..|.|.-. . . ...|+.||.+..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 455799999977732 2 2 467999999864
No 36
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=55.13 E-value=3.7 Score=27.28 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=7.0
Q ss_pred cccCCCCccC
Q 020298 274 IWRCPACTFD 283 (328)
Q Consensus 274 ~W~c~~C~~~ 283 (328)
.|+|+.|.|.
T Consensus 3 ~y~C~vCGyv 12 (54)
T 4rxn_A 3 KYTCTVCGYI 12 (54)
T ss_dssp CEEETTTCCE
T ss_pred ceECCCCCeE
Confidence 4778888664
No 37
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=52.85 E-value=2.4 Score=23.91 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.0
Q ss_pred CCChHHHHHHHhhh
Q 020298 313 NIPLEELRHRRIER 326 (328)
Q Consensus 313 ~~~~~~~r~~~~~~ 326 (328)
+.++|+||++|+.-
T Consensus 4 d~ELeair~~rl~~ 17 (27)
T 1yyb_A 4 DEELEALRRQRLAE 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45689999999863
No 38
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=52.27 E-value=3.1 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred CCCCcccCCCCccCCCC-------------------CCccccccCCCCC
Q 020298 270 TAPIIWRCPACTFDNSG-------------------WLSICEMCGTSRS 299 (328)
Q Consensus 270 ~~~g~W~c~~C~~~n~~-------------------~~~~c~~cg~~~~ 299 (328)
.....|+|..|-|.-.+ ..-+|+.||.+..
T Consensus 31 ~~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 79 (87)
T 1s24_A 31 KAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 79 (87)
T ss_dssp -CCCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGG
T ss_pred cCCceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHH
Confidence 34557999999765321 1116999998654
No 39
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=46.93 E-value=12 Score=23.96 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=22.7
Q ss_pred ccCCCCc-----cCCCCCCccccccCCCCCCCCCCcc
Q 020298 275 WRCPACT-----FDNSGWLSICEMCGTSRSGNDLSSD 306 (328)
Q Consensus 275 W~c~~C~-----~~n~~~~~~c~~cg~~~~~~~~~~~ 306 (328)
-.|+.|. ||.....-+|+.||...+++...+.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~ 42 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMG 42 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccccccccC
Confidence 5799994 4445566789999998877655433
No 40
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=45.19 E-value=3.6 Score=27.18 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=14.2
Q ss_pred CccccccCCCCC------CCCCCcc
Q 020298 288 LSICEMCGTSRS------GNDLSSD 306 (328)
Q Consensus 288 ~~~c~~cg~~~~------~~~~~~~ 306 (328)
.+-|++||..+. ||.||++
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~q 37 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQ 37 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHH
T ss_pred CccccccCcccccccchhhhhccHH
Confidence 357999999876 5677665
No 41
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.12 E-value=5.6 Score=26.09 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=6.6
Q ss_pred cccCCCCccC
Q 020298 274 IWRCPACTFD 283 (328)
Q Consensus 274 ~W~c~~C~~~ 283 (328)
.|+|..|-|.
T Consensus 2 ~~~C~~CGyv 11 (52)
T 1yk4_A 2 KLSCKICGYI 11 (52)
T ss_dssp EEEESSSSCE
T ss_pred cEEeCCCCeE
Confidence 3777777655
No 42
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.25 E-value=11 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=19.0
Q ss_pred cccCCCCccCCCCCCccccccCCC
Q 020298 274 IWRCPACTFDNSGWLSICEMCGTS 297 (328)
Q Consensus 274 ~W~c~~C~~~n~~~~~~c~~cg~~ 297 (328)
...|..|...|++..-.|..||..
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSC
T ss_pred CccCCCCCCcCCCCceecCCCCCc
Confidence 477888888888877888888866
No 43
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=39.45 E-value=29 Score=23.37 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=16.4
Q ss_pred cccCCCCc-cCCCCCCccccccCCCCC
Q 020298 274 IWRCPACT-FDNSGWLSICEMCGTSRS 299 (328)
Q Consensus 274 ~W~c~~C~-~~n~~~~~~c~~cg~~~~ 299 (328)
+=.|+.|. |.- .++|+.||.+-.
T Consensus 6 mr~C~~CgvYTL---k~~CP~CG~~T~ 29 (60)
T 2apo_B 6 MKKCPKCGLYTL---KEICPKCGEKTV 29 (60)
T ss_dssp CEECTTTCCEES---SSBCSSSCSBCB
T ss_pred ceeCCCCCCEec---cccCcCCCCcCC
Confidence 45788884 333 688999998743
No 44
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=38.36 E-value=31 Score=22.92 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=24.2
Q ss_pred ccCCCCc-----cCCCCCCccccccCCCCCCCCCCccc
Q 020298 275 WRCPACT-----FDNSGWLSICEMCGTSRSGNDLSSDQ 307 (328)
Q Consensus 275 W~c~~C~-----~~n~~~~~~c~~cg~~~~~~~~~~~~ 307 (328)
=.|+.|. +|.....-+|..||.--+++...+.+
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gp 49 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGS 49 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCC
Confidence 3799994 45566678899999998877655443
No 45
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.04 E-value=38 Score=20.29 Aligned_cols=7 Identities=29% Similarity=0.790 Sum_probs=5.2
Q ss_pred cccCCCC
Q 020298 274 IWRCPAC 280 (328)
Q Consensus 274 ~W~c~~C 280 (328)
.+.|..|
T Consensus 12 ~~~C~~C 18 (48)
T 2epr_A 12 QVACEIC 18 (48)
T ss_dssp SEEETTT
T ss_pred CeeCCCC
Confidence 4778877
No 46
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.36 E-value=18 Score=24.91 Aligned_cols=24 Identities=33% Similarity=0.949 Sum_probs=17.6
Q ss_pred ccCCCC-----ccCCCCCCccccccCCCC
Q 020298 275 WRCPAC-----TFDNSGWLSICEMCGTSR 298 (328)
Q Consensus 275 W~c~~C-----~~~n~~~~~~c~~cg~~~ 298 (328)
=+|+.| .|+...+...|..||+.=
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEE
Confidence 368888 455666677799999863
No 47
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=30.00 E-value=13 Score=36.95 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=4.2
Q ss_pred cccCCCCccCCCC----CCccccccCCCCCC--CCCC------cccccC-CCCCChHHHHHHHh
Q 020298 274 IWRCPACTFDNSG----WLSICEMCGTSRSG--NDLS------SDQLSR-HSNIPLEELRHRRI 324 (328)
Q Consensus 274 ~W~c~~C~~~n~~----~~~~c~~cg~~~~~--~~~~------~~~~~~-~~~~~~~~~r~~~~ 324 (328)
.-.|..|.|...- ..+.|+.||...+. +..+ ....++ .|+-+++|++.|.-
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~~~~~~~~~~Ri~GYl~~~~~~~~N~gk~~E~~~R~~ 603 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYLGNPNERGFNLGKNKEIMHRVK 603 (605)
T ss_dssp EEET----------------------------TEEEBCSSSSCBCTTC----------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCCcchhhHHHHHHhhhccCcccccccchhHHHHHHhhc
Confidence 4789999998742 24789999974321 1111 111113 55666788887764
No 48
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.08 E-value=19 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=14.0
Q ss_pred cCCCCCCccccccCCCCCCC
Q 020298 282 FDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 282 ~~n~~~~~~c~~cg~~~~~~ 301 (328)
.+.+....+|+.||.|-.-+
T Consensus 11 le~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 11 LDKPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCCCEEECTTTCCEEETT
T ss_pred cCccccchhhcccCCcchHH
Confidence 34455678899999985543
No 49
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.44 E-value=44 Score=24.98 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=8.5
Q ss_pred CCCcccCCCCc
Q 020298 271 APIIWRCPACT 281 (328)
Q Consensus 271 ~~g~W~c~~C~ 281 (328)
.++.|.|..|.
T Consensus 45 ~~~~W~C~~C~ 55 (111)
T 2ysm_A 45 KRAGWQCPECK 55 (111)
T ss_dssp TSTTCCCTTTC
T ss_pred cccCccCCcCC
Confidence 34679999885
No 50
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.23 E-value=59 Score=20.02 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=16.0
Q ss_pred CcccCCCCc---------------cCCCCCCccccccCCC
Q 020298 273 IIWRCPACT---------------FDNSGWLSICEMCGTS 297 (328)
Q Consensus 273 g~W~c~~C~---------------~~n~~~~~~c~~cg~~ 297 (328)
..+.|..|. .+.......|+.||..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~ 50 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCS
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 348888882 2233344579999875
No 51
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.17 E-value=37 Score=22.83 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=21.9
Q ss_pred CCCCcccCCCCccCCCCCCccccccCCCCC
Q 020298 270 TAPIIWRCPACTFDNSGWLSICEMCGTSRS 299 (328)
Q Consensus 270 ~~~g~W~c~~C~~~n~~~~~~c~~cg~~~~ 299 (328)
..+..-.|+.|.-.- ....+|+-||..+.
T Consensus 26 ~~p~l~~c~~cG~~~-~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKK-LSHHICPNCGYYDG 54 (60)
T ss_dssp CCCCCEECTTTCCEE-CTTBCCTTTCBSSS
T ss_pred cCCCceECCCCCCEe-CCceEcCCCCcCCC
Confidence 456678899998774 45789999997654
No 52
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.64 E-value=59 Score=21.88 Aligned_cols=22 Identities=32% Similarity=0.973 Sum_probs=15.9
Q ss_pred cccCCCCc-cCCCCCCccccccCCCC
Q 020298 274 IWRCPACT-FDNSGWLSICEMCGTSR 298 (328)
Q Consensus 274 ~W~c~~C~-~~n~~~~~~c~~cg~~~ 298 (328)
+=.|+.|. |.. ..+|+.||..-
T Consensus 5 mr~C~~Cg~YTL---k~~CP~CG~~t 27 (60)
T 2aus_D 5 IRKCPKCGRYTL---KETCPVCGEKT 27 (60)
T ss_dssp CEECTTTCCEES---SSBCTTTCSBC
T ss_pred ceECCCCCCEEc---cccCcCCCCcc
Confidence 45788884 333 67899999773
No 53
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=26.62 E-value=12 Score=26.86 Aligned_cols=22 Identities=27% Similarity=0.756 Sum_probs=17.8
Q ss_pred ccCCCCccCCCCCCccccccCCCC
Q 020298 275 WRCPACTFDNSGWLSICEMCGTSR 298 (328)
Q Consensus 275 W~c~~C~~~n~~~~~~c~~cg~~~ 298 (328)
=.|..|.+..+. +.|+.||...
T Consensus 24 rAC~~C~~v~~~--d~CPnCgs~~ 45 (81)
T 3p8b_A 24 KACRHCHYITSE--DRCPVCGSRD 45 (81)
T ss_dssp EEETTTCBEESS--SSCTTTCCCC
T ss_pred HHHhhCCCccCC--CCCCCCCCCc
Confidence 469999999755 5799999864
No 54
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.53 E-value=28 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.757 Sum_probs=17.3
Q ss_pred ccCCCC-----ccCCCCCCccccccCCC
Q 020298 275 WRCPAC-----TFDNSGWLSICEMCGTS 297 (328)
Q Consensus 275 W~c~~C-----~~~n~~~~~~c~~cg~~ 297 (328)
=+|+.| .|+...+...|..||+.
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 578888 35566666779999985
No 55
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=26.49 E-value=19 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=17.1
Q ss_pred ccCCCCccCCCCCCccccccCCC
Q 020298 275 WRCPACTFDNSGWLSICEMCGTS 297 (328)
Q Consensus 275 W~c~~C~~~n~~~~~~c~~cg~~ 297 (328)
=.|..|.+.- ....||.||..
T Consensus 12 ~AC~~C~~~~--~~~~CPnC~s~ 32 (69)
T 1ryq_A 12 KACRHCHYIT--SEDRCPVCGSR 32 (69)
T ss_dssp EEETTTCBEE--SSSSCTTTCCC
T ss_pred hhHHhCCccc--cCCcCCCccCC
Confidence 5799999976 56889999965
No 56
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=25.76 E-value=27 Score=19.38 Aligned_cols=16 Identities=31% Similarity=1.140 Sum_probs=11.2
Q ss_pred ccCCCCccCCCCCCccccccCCCC
Q 020298 275 WRCPACTFDNSGWLSICEMCGTSR 298 (328)
Q Consensus 275 W~c~~C~~~n~~~~~~c~~cg~~~ 298 (328)
|.|-.| -+|..|+..-
T Consensus 2 wtcwsc--------lvcaacsvel 17 (31)
T 2lbz_A 2 WTCWSC--------LVCAACSVEL 17 (31)
T ss_dssp CCTTGG--------GGGGGCCSCS
T ss_pred ccHHHH--------HHHHHhHHHH
Confidence 777776 4788887643
No 57
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=25.61 E-value=45 Score=26.75 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=18.6
Q ss_pred ccCCCCccC-------CCCCCccccccCCCCCCCCCC
Q 020298 275 WRCPACTFD-------NSGWLSICEMCGTSRSGNDLS 304 (328)
Q Consensus 275 W~c~~C~~~-------n~~~~~~c~~cg~~~~~~~~~ 304 (328)
-.|+.|.-- +..-.-.|+.||..+..+.-.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC--
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchh
Confidence 456666322 334456699999998876543
No 58
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.00 E-value=21 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=16.7
Q ss_pred ccCCCCccC--CCCCCccccccCCC
Q 020298 275 WRCPACTFD--NSGWLSICEMCGTS 297 (328)
Q Consensus 275 W~c~~C~~~--n~~~~~~c~~cg~~ 297 (328)
.+|..|... -......|+.||.+
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EECCCCCCcccCCCCCCcCCCCCCc
Confidence 899999743 22334589999975
No 59
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=24.56 E-value=47 Score=17.70 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=10.4
Q ss_pred CCCCCChHHHHHHHh
Q 020298 310 RHSNIPLEELRHRRI 324 (328)
Q Consensus 310 ~~~~~~~~~~r~~~~ 324 (328)
++|.+|-.|-|+||-
T Consensus 5 rgsrpsgaerrrrra 19 (26)
T 1g70_B 5 RGSRPSGAERRRRRA 19 (26)
T ss_pred cCCCCchHHHHHHHH
Confidence 556677778777763
No 60
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.88 E-value=26 Score=27.54 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=17.5
Q ss_pred CcccCCCCccCC---CCCCccccccCCCC
Q 020298 273 IIWRCPACTFDN---SGWLSICEMCGTSR 298 (328)
Q Consensus 273 g~W~c~~C~~~n---~~~~~~c~~cg~~~ 298 (328)
..=.|+.|...+ ....-+|+.|+---
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCCeEECCcccccc
Confidence 346899995443 23468899998643
No 61
>2jss_B Uncharacterized protein YER030W; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae}
Probab=23.62 E-value=26 Score=23.55 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=7.2
Q ss_pred CCCCCCccc
Q 020298 3 RGGGGWRVS 11 (328)
Q Consensus 3 ~~~~~~~~~ 11 (328)
||||||.|-
T Consensus 42 RRTRGk~ID 50 (62)
T 2jss_B 42 RRTRGKVID 50 (62)
T ss_dssp SCCCCCCCT
T ss_pred cccCCceec
Confidence 899988764
No 62
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.20 E-value=96 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=16.4
Q ss_pred CCcccCCCCccC--------------CCCCCccccccCCC
Q 020298 272 PIIWRCPACTFD--------------NSGWLSICEMCGTS 297 (328)
Q Consensus 272 ~g~W~c~~C~~~--------------n~~~~~~c~~cg~~ 297 (328)
...+.|..|... +....-.|+.|+..
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 55 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA 55 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCE
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCc
Confidence 345999999322 22234569999875
No 63
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=23.15 E-value=89 Score=26.32 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCcccCCCCccCCCCCCccccccCCCCCCC-CCCccc---ccCCCCCChHHHHHH
Q 020298 271 APIIWRCPACTFDNSGWLSICEMCGTSRSGN-DLSSDQ---LSRHSNIPLEELRHR 322 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~~~~~~c~~cg~~~~~~-~~~~~~---~~~~~~~~~~~~r~~ 322 (328)
....|.|..-.-.-......|..|+.....+ ...... .+...+.+.+|||++
T Consensus 10 ~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~a 65 (207)
T 3bvo_A 10 YPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHR 65 (207)
T ss_dssp -CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHH
T ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHH
Confidence 3345666532101123457799999876543 111111 111114678899864
No 64
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=22.13 E-value=19 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=21.1
Q ss_pred ccCCCCccCCCCCCccccccCCCCCC
Q 020298 275 WRCPACTFDNSGWLSICEMCGTSRSG 300 (328)
Q Consensus 275 W~c~~C~~~n~~~~~~c~~cg~~~~~ 300 (328)
-+|+.|.-.--+....|+.|+....+
T Consensus 48 ~rC~~CG~~~~PPr~~Cp~C~s~~~~ 73 (145)
T 3irb_A 48 SKCSKCGRIFVPARSYCEHCFVKIEN 73 (145)
T ss_dssp EECTTTCCEEESCCSEETTTTEECCE
T ss_pred EEeCCCCcEEcCchhhCcCCCCCcee
Confidence 68999977776678899999987654
No 65
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=21.86 E-value=21 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=20.7
Q ss_pred cccCCCCccCCCCCCccccccCCCCCCC
Q 020298 274 IWRCPACTFDNSGWLSICEMCGTSRSGN 301 (328)
Q Consensus 274 ~W~c~~C~~~n~~~~~~c~~cg~~~~~~ 301 (328)
.-.|+.|.... ..+.|++|.-++.|+
T Consensus 54 i~~C~~C~nlt--e~~~C~IC~d~~Rd~ 79 (228)
T 1vdd_A 54 LHVCPICFNIT--DAEKCDVCADPSRDQ 79 (228)
T ss_dssp CEECSSSCCEE--SSSSCHHHHCSSSCT
T ss_pred CeEcCCCCCCc--CCCcCCCCCCCCcCC
Confidence 47899998774 358899998887775
No 66
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=21.53 E-value=44 Score=17.97 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=9.9
Q ss_pred hHHHHHHHhhhc
Q 020298 316 LEELRHRRIERF 327 (328)
Q Consensus 316 ~~~~r~~~~~~~ 327 (328)
.+|-|+.||.|.
T Consensus 2 sp~qr~~rl~rm 13 (26)
T 1vda_A 2 TPAQRQARLLRM 13 (26)
T ss_dssp CHHHHHHHHTSC
T ss_pred CHHHHHHHHHHH
Confidence 478899999885
No 67
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.48 E-value=22 Score=18.99 Aligned_cols=10 Identities=30% Similarity=0.807 Sum_probs=7.7
Q ss_pred cccccCCCCC
Q 020298 290 ICEMCGTSRS 299 (328)
Q Consensus 290 ~c~~cg~~~~ 299 (328)
.||.|+.|-.
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 4999998754
No 68
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=21.33 E-value=80 Score=21.16 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=18.6
Q ss_pred cCCCCccCCCCCCccccccCCCCCCCCCCc
Q 020298 276 RCPACTFDNSGWLSICEMCGTSRSGNDLSS 305 (328)
Q Consensus 276 ~c~~C~~~n~~~~~~c~~cg~~~~~~~~~~ 305 (328)
.|+.|. +.+..+.|+.|-++-+...|+-
T Consensus 20 ~Cs~C~--~~p~SdfC~~cps~t~p~~fpl 47 (66)
T 2kn0_A 20 ECSVCK--NSEKSDFCQNCPSKTEQPDFPW 47 (66)
T ss_dssp ESTTCS--SCCCCTTTTTCCCCSCSCCCCS
T ss_pred ccCcCC--CCCCcccccCCCCCCCCCCccc
Confidence 355553 5677899999977666554543
No 69
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.19 E-value=54 Score=24.64 Aligned_cols=10 Identities=30% Similarity=1.228 Sum_probs=7.7
Q ss_pred CCcccCCCCc
Q 020298 272 PIIWRCPACT 281 (328)
Q Consensus 272 ~g~W~c~~C~ 281 (328)
.+.|.|..|.
T Consensus 53 ~~~W~C~~C~ 62 (112)
T 3v43_A 53 ALRWQCIECK 62 (112)
T ss_dssp TSCCCCTTTC
T ss_pred ccccccccCC
Confidence 3469999996
No 70
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.93 E-value=37 Score=23.74 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=10.9
Q ss_pred CCCCcccCCCCccC
Q 020298 270 TAPIIWRCPACTFD 283 (328)
Q Consensus 270 ~~~g~W~c~~C~~~ 283 (328)
.+.|.|+|..|.+.
T Consensus 40 ~a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 40 GAAGIWTCSCCKKT 53 (72)
T ss_dssp CSSSCBCCSSSCCC
T ss_pred cCCCeEECCCCCCE
Confidence 45789999999654
No 71
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.91 E-value=1.6e+02 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=16.1
Q ss_pred CCCcccCCCCccCCCCCCc-ccccc
Q 020298 271 APIIWRCPACTFDNSGWLS-ICEMC 294 (328)
Q Consensus 271 ~~g~W~c~~C~~~n~~~~~-~c~~c 294 (328)
..|.|.|+.|.-..++... .|+-+
T Consensus 39 p~~~W~C~~C~~~~~~~~e~dc~~~ 63 (184)
T 3o36_A 39 PSGEWICTFCRDLSKPEVEYDCDAP 63 (184)
T ss_dssp CSSCCCCTTTSCSSSCSSCCGGGCC
T ss_pred CCCCEECccccCccccccccccccc
Confidence 4567999999987765432 35533
No 72
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=20.41 E-value=47 Score=23.81 Aligned_cols=24 Identities=33% Similarity=0.785 Sum_probs=17.9
Q ss_pred ccCCCCc-----cCCCCCCccccccCCCC
Q 020298 275 WRCPACT-----FDNSGWLSICEMCGTSR 298 (328)
Q Consensus 275 W~c~~C~-----~~n~~~~~~c~~cg~~~ 298 (328)
=+|+.|. |....+...|..||+.=
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCC
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEE
Confidence 6899994 44556667799999863
No 73
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.07 E-value=21 Score=32.00 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=19.6
Q ss_pred CCCCcc-cCCCCcc---CC--CCCCccccccCCCC
Q 020298 270 TAPIIW-RCPACTF---DN--SGWLSICEMCGTSR 298 (328)
Q Consensus 270 ~~~g~W-~c~~C~~---~n--~~~~~~c~~cg~~~ 298 (328)
...+.| +|+.|.- .+ .+...+|+.|+.+.
T Consensus 25 ~~~~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~ 59 (285)
T 2f9i_B 25 VPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHI 59 (285)
T ss_dssp -CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCBC
T ss_pred CChHHHHhhHhhCCccchhhhHHhcCcCCCCCCCC
Confidence 345677 7999953 33 34468999999843
Done!