Query 020299
Match_columns 328
No_of_seqs 201 out of 1514
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 3E-67 6.5E-72 467.7 28.8 266 12-305 3-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 6.5E-66 1.4E-70 459.1 29.8 281 14-305 6-289 (300)
3 KOG1575 Voltage-gated shaker-l 100.0 7.4E-60 1.6E-64 427.7 28.8 284 6-311 6-335 (336)
4 COG0667 Tas Predicted oxidored 100.0 7.6E-60 1.6E-64 435.3 29.4 267 12-302 1-310 (316)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.4E-58 5.2E-63 417.8 31.1 253 23-304 2-255 (267)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 4.2E-57 9.1E-62 423.9 31.0 279 1-302 4-334 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 3.6E-57 7.9E-62 419.9 29.1 264 14-299 1-316 (317)
8 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.3E-56 2.8E-61 407.9 30.7 263 12-305 4-266 (275)
9 PRK10625 tas putative aldo-ket 100.0 7.3E-57 1.6E-61 422.7 29.7 282 12-301 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-54 2.4E-59 397.6 30.2 264 14-299 1-285 (285)
11 PLN02587 L-galactose dehydroge 100.0 7.1E-55 1.5E-59 404.2 28.5 269 14-301 1-300 (314)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 9.8E-54 2.1E-58 391.0 25.0 254 26-300 1-282 (283)
13 PRK10376 putative oxidoreducta 100.0 5.1E-53 1.1E-57 387.3 29.3 259 14-302 9-289 (290)
14 PRK14863 bifunctional regulato 100.0 1.4E-51 2.9E-56 377.5 22.0 251 22-298 3-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 4.8E-51 1E-55 349.2 18.9 267 12-300 1-292 (298)
16 COG1453 Predicted oxidoreducta 100.0 2.5E-46 5.5E-51 336.9 19.7 265 12-302 1-286 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3.5E-45 7.6E-50 315.4 19.4 263 8-290 18-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 2E-07 4.4E-12 80.4 6.9 140 84-223 73-229 (285)
19 PF07021 MetW: Methionine bios 88.9 3.4 7.3E-05 35.4 8.7 101 107-225 63-170 (193)
20 PRK10558 alpha-dehydro-beta-de 87.1 6.3 0.00014 35.5 9.9 101 157-286 10-115 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 84.6 17 0.00036 33.0 11.3 102 157-286 9-114 (267)
22 TIGR00190 thiC thiamine biosyn 83.5 43 0.00093 32.1 20.2 154 28-230 66-231 (423)
23 PRK08392 hypothetical protein; 82.9 31 0.00067 29.9 16.9 179 42-255 16-209 (215)
24 TIGR00381 cdhD CO dehydrogenas 82.4 32 0.0007 32.7 12.5 128 101-254 127-270 (389)
25 TIGR03239 GarL 2-dehydro-3-deo 81.6 20 0.00044 32.0 10.6 97 161-286 7-108 (249)
26 COG0635 HemN Coproporphyrinoge 81.4 15 0.00033 35.6 10.3 76 96-176 198-276 (416)
27 PF07725 LRR_3: Leucine Rich R 81.1 0.61 1.3E-05 24.5 0.4 13 315-327 7-19 (20)
28 TIGR00216 ispH_lytB (E)-4-hydr 80.6 9.9 0.00021 34.7 8.2 115 156-281 146-273 (280)
29 COG1748 LYS9 Saccharopine dehy 80.3 10 0.00022 36.2 8.6 82 38-131 77-159 (389)
30 cd03319 L-Ala-DL-Glu_epimerase 79.1 53 0.0011 30.2 16.4 150 38-224 134-289 (316)
31 PRK01045 ispH 4-hydroxy-3-meth 78.0 14 0.0003 34.1 8.4 107 164-281 156-275 (298)
32 PRK13352 thiamine biosynthesis 78.0 68 0.0015 30.9 20.3 95 98-230 139-234 (431)
33 TIGR01496 DHPS dihydropteroate 77.1 53 0.0011 29.5 11.9 107 99-222 20-126 (257)
34 cd03316 MR_like Mandelate race 76.6 67 0.0014 30.1 14.6 148 38-221 139-298 (357)
35 PRK12360 4-hydroxy-3-methylbut 76.2 14 0.0003 33.7 7.9 107 164-281 157-274 (281)
36 PRK04452 acetyl-CoA decarbonyl 76.2 29 0.00062 32.3 10.0 115 112-254 85-205 (319)
37 PRK07535 methyltetrahydrofolat 75.7 37 0.00081 30.6 10.5 102 100-222 23-124 (261)
38 TIGR02026 BchE magnesium-proto 75.2 43 0.00092 33.2 11.7 127 146-283 220-361 (497)
39 PF02401 LYTB: LytB protein; 75.0 7.8 0.00017 35.4 5.9 107 164-281 155-274 (281)
40 PF03102 NeuB: NeuB family; I 73.5 22 0.00047 31.7 8.3 121 37-184 53-190 (241)
41 PF01175 Urocanase: Urocanase; 72.2 49 0.0011 32.7 10.7 128 43-198 105-258 (546)
42 COG0761 lytB 4-Hydroxy-3-methy 72.1 21 0.00044 32.6 7.7 118 153-281 145-277 (294)
43 PRK08609 hypothetical protein; 72.0 1.2E+02 0.0025 30.8 17.5 181 42-254 351-552 (570)
44 cd00423 Pterin_binding Pterin 71.6 75 0.0016 28.4 12.2 109 99-224 21-130 (258)
45 TIGR02311 HpaI 2,4-dihydroxyhe 71.3 61 0.0013 28.9 10.8 99 159-286 5-108 (249)
46 cd00740 MeTr MeTr subgroup of 69.9 83 0.0018 28.2 11.5 105 99-223 23-128 (252)
47 PLN02489 homocysteine S-methyl 69.7 99 0.0021 29.0 17.3 170 86-285 131-332 (335)
48 COG0159 TrpA Tryptophan syntha 66.9 99 0.0021 28.0 10.9 84 204-298 137-242 (265)
49 PRK07094 biotin synthase; Prov 66.4 70 0.0015 29.5 10.5 121 148-283 70-203 (323)
50 KOG0259 Tyrosine aminotransfer 65.5 1.3E+02 0.0028 28.8 11.7 51 37-94 78-135 (447)
51 cd03315 MLE_like Muconate lact 65.3 1E+02 0.0022 27.5 14.2 152 38-225 85-242 (265)
52 cd07944 DRE_TIM_HOA_like 4-hyd 64.6 92 0.002 28.1 10.6 110 98-220 16-128 (266)
53 COG0159 TrpA Tryptophan syntha 64.2 1.1E+02 0.0024 27.6 10.8 51 190-250 96-148 (265)
54 PRK13796 GTPase YqeH; Provisio 64.0 1.3E+02 0.0029 28.4 12.3 122 37-183 54-181 (365)
55 COG1140 NarY Nitrate reductase 63.6 5.1 0.00011 37.7 2.2 53 163-216 263-317 (513)
56 cd01965 Nitrogenase_MoFe_beta_ 62.3 1.5E+02 0.0033 28.6 13.5 116 61-192 61-187 (428)
57 cd00739 DHPS DHPS subgroup of 62.1 1.2E+02 0.0026 27.2 11.2 107 99-222 21-128 (257)
58 cd03174 DRE_TIM_metallolyase D 62.1 57 0.0012 28.9 8.8 103 99-221 16-135 (265)
59 PRK00912 ribonuclease P protei 61.6 1.1E+02 0.0025 26.8 12.7 168 40-255 16-202 (237)
60 TIGR00735 hisF imidazoleglycer 60.8 1.2E+02 0.0027 26.9 12.0 64 154-217 188-253 (254)
61 cd01973 Nitrogenase_VFe_beta_l 60.7 1.7E+02 0.0038 28.6 14.4 114 59-191 64-192 (454)
62 PRK00087 4-hydroxy-3-methylbut 60.7 37 0.00081 34.9 8.1 112 158-280 148-270 (647)
63 PRK08195 4-hyroxy-2-oxovalerat 59.0 1.6E+02 0.0034 27.6 12.5 24 37-60 22-45 (337)
64 cd03322 rpsA The starvation se 58.4 1.7E+02 0.0036 27.6 13.8 145 38-223 126-274 (361)
65 PLN02746 hydroxymethylglutaryl 58.0 1.7E+02 0.0036 27.7 11.3 101 102-220 67-181 (347)
66 TIGR00126 deoC deoxyribose-pho 56.5 50 0.0011 28.8 7.1 74 37-119 129-205 (211)
67 PRK05692 hydroxymethylglutaryl 56.1 84 0.0018 28.7 8.9 98 104-219 27-138 (287)
68 PRK05283 deoxyribose-phosphate 56.0 83 0.0018 28.4 8.5 85 26-121 135-227 (257)
69 KOG1576 Predicted oxidoreducta 55.7 1E+02 0.0022 28.2 8.8 151 23-217 103-270 (342)
70 TIGR01228 hutU urocanate hydra 54.6 47 0.001 32.7 7.0 129 44-198 107-259 (545)
71 PRK05414 urocanate hydratase; 54.4 48 0.001 32.7 7.1 129 44-198 116-268 (556)
72 PRK00164 moaA molybdenum cofac 54.0 1.8E+02 0.004 26.8 16.0 162 37-218 49-227 (331)
73 PLN02591 tryptophan synthase 53.4 1.6E+02 0.0035 26.3 10.0 51 190-250 80-132 (250)
74 TIGR01278 DPOR_BchB light-inde 53.1 2.4E+02 0.0053 28.0 12.5 109 62-190 66-191 (511)
75 PRK09058 coproporphyrinogen II 51.3 2.4E+02 0.0053 27.5 14.3 125 100-224 41-183 (449)
76 COG4943 Predicted signal trans 50.6 1.6E+02 0.0036 29.0 10.0 130 67-221 342-478 (524)
77 KOG0369 Pyruvate carboxylase [ 50.4 1.6E+02 0.0035 30.4 10.0 144 40-225 43-195 (1176)
78 PRK06361 hypothetical protein; 48.4 1.7E+02 0.0038 24.9 14.8 184 41-259 11-200 (212)
79 PRK13958 N-(5'-phosphoribosyl) 47.7 84 0.0018 27.2 7.1 65 113-197 18-83 (207)
80 PRK05799 coproporphyrinogen II 47.6 2.5E+02 0.0054 26.5 12.6 102 122-223 5-118 (374)
81 cd08319 Death_RAIDD Death doma 47.5 23 0.0005 25.9 3.0 72 102-195 10-81 (83)
82 PRK13347 coproporphyrinogen II 46.8 2.9E+02 0.0062 27.0 15.5 123 98-224 32-172 (453)
83 COG2069 CdhD CO dehydrogenase/ 46.7 2.4E+02 0.0052 26.1 10.9 100 111-225 159-262 (403)
84 PF00809 Pterin_bind: Pterin b 45.5 88 0.0019 27.0 6.9 70 150-223 56-125 (210)
85 cd07943 DRE_TIM_HOA 4-hydroxy- 45.5 1.5E+02 0.0031 26.6 8.6 108 98-220 18-131 (263)
86 cd01822 Lysophospholipase_L1_l 45.4 1.3E+02 0.0029 24.3 7.9 87 164-251 37-137 (177)
87 cd02801 DUS_like_FMN Dihydrour 45.3 2E+02 0.0043 24.8 9.6 129 37-189 64-208 (231)
88 PF04748 Polysacc_deac_2: Dive 45.2 1.4E+02 0.003 26.0 8.1 84 37-126 71-182 (213)
89 TIGR01928 menC_lowGC/arch o-su 44.9 2.6E+02 0.0056 25.9 15.1 150 38-225 132-285 (324)
90 COG1149 MinD superfamily P-loo 44.7 40 0.00087 30.6 4.7 50 174-225 201-250 (284)
91 PF11242 DUF2774: Protein of u 44.5 32 0.00069 23.6 3.0 23 240-262 15-37 (63)
92 PRK08446 coproporphyrinogen II 44.2 2.6E+02 0.0057 26.2 10.4 120 43-176 98-231 (350)
93 PRK09413 IS2 repressor TnpA; R 44.0 44 0.00095 26.1 4.4 40 37-76 13-53 (121)
94 PRK07534 methionine synthase I 43.4 2.8E+02 0.0061 26.0 20.3 211 38-285 43-294 (336)
95 PRK04390 rnpA ribonuclease P; 43.4 1.4E+02 0.0031 23.3 7.2 65 84-163 44-110 (120)
96 PF01904 DUF72: Protein of unk 43.3 2.3E+02 0.0049 24.8 9.7 68 54-130 19-96 (230)
97 COG0279 GmhA Phosphoheptose is 43.1 2E+02 0.0044 24.2 9.2 117 40-185 28-156 (176)
98 cd07948 DRE_TIM_HCS Saccharomy 43.1 2.5E+02 0.0054 25.2 9.9 99 99-221 19-132 (262)
99 TIGR03822 AblA_like_2 lysine-2 42.2 2.8E+02 0.0062 25.6 11.1 76 150-228 152-240 (321)
100 PLN02540 methylenetetrahydrofo 42.2 3.8E+02 0.0083 27.1 16.9 159 42-219 17-202 (565)
101 cd00405 PRAI Phosphoribosylant 41.9 2.2E+02 0.0047 24.2 8.9 40 120-179 74-113 (203)
102 TIGR00289 conserved hypothetic 41.8 1.7E+02 0.0036 25.8 8.1 87 204-304 75-171 (222)
103 KOG0023 Alcohol dehydrogenase, 41.8 1.4E+02 0.0029 28.1 7.6 149 9-217 171-324 (360)
104 PRK03031 rnpA ribonuclease P; 41.8 1.4E+02 0.0031 23.3 7.0 65 84-163 47-114 (122)
105 PRK09058 coproporphyrinogen II 41.8 3.3E+02 0.0071 26.6 11.0 77 95-176 223-304 (449)
106 COG2089 SpsE Sialic acid synth 41.6 3E+02 0.0065 25.8 11.7 118 37-185 87-225 (347)
107 PRK00730 rnpA ribonuclease P; 41.4 1.5E+02 0.0032 24.0 7.0 63 84-163 46-110 (138)
108 PRK01492 rnpA ribonuclease P; 40.7 1.7E+02 0.0036 22.9 7.2 62 85-161 47-114 (118)
109 PRK06294 coproporphyrinogen II 40.4 2E+02 0.0043 27.2 9.1 102 24-174 114-241 (370)
110 PRK08776 cystathionine gamma-s 40.1 3.3E+02 0.0072 26.1 10.7 74 151-225 110-186 (405)
111 PRK10550 tRNA-dihydrouridine s 39.8 3.1E+02 0.0067 25.4 12.8 132 37-189 72-219 (312)
112 cd01976 Nitrogenase_MoFe_alpha 39.4 3.6E+02 0.0078 26.0 14.5 169 60-251 77-271 (421)
113 PRK07945 hypothetical protein; 39.0 3.3E+02 0.0071 25.5 20.5 104 40-171 111-227 (335)
114 cd00308 enolase_like Enolase-s 39.0 1.8E+02 0.004 25.2 8.1 70 154-225 134-207 (229)
115 COG1801 Uncharacterized conser 38.8 3E+02 0.0064 24.9 10.6 97 26-131 4-115 (263)
116 PRK10528 multifunctional acyl- 38.8 1.5E+02 0.0033 24.8 7.4 93 160-254 40-147 (191)
117 KOG0173 20S proteasome, regula 38.4 23 0.0005 31.4 2.1 43 12-55 159-201 (271)
118 TIGR02026 BchE magnesium-proto 38.3 4.1E+02 0.0088 26.3 11.8 65 149-215 321-392 (497)
119 KOG1549 Cysteine desulfurase N 37.6 1.5E+02 0.0033 28.8 7.6 71 153-223 144-220 (428)
120 PRK01222 N-(5'-phosphoribosyl) 37.4 1.4E+02 0.0029 25.9 6.8 73 101-198 13-86 (210)
121 TIGR02370 pyl_corrinoid methyl 37.3 1.7E+02 0.0037 25.0 7.4 148 37-215 9-164 (197)
122 PRK13361 molybdenum cofactor b 36.8 3.5E+02 0.0075 25.1 14.2 106 37-165 45-154 (329)
123 COG4992 ArgD Ornithine/acetylo 36.7 1.9E+02 0.0041 27.9 8.0 64 51-128 39-108 (404)
124 PRK00499 rnpA ribonuclease P; 36.6 2E+02 0.0043 22.2 7.0 64 84-163 38-104 (114)
125 COG2874 FlaH Predicted ATPases 36.4 3E+02 0.0066 24.3 8.8 153 15-186 19-182 (235)
126 PF06080 DUF938: Protein of un 36.4 52 0.0011 28.5 4.0 43 190-232 107-152 (204)
127 PF06506 PrpR_N: Propionate ca 36.2 44 0.00095 28.0 3.5 66 149-219 62-130 (176)
128 PRK10415 tRNA-dihydrouridine s 36.2 3.6E+02 0.0077 25.0 12.4 134 37-196 74-224 (321)
129 PRK08446 coproporphyrinogen II 36.1 3.7E+02 0.008 25.2 11.9 151 122-283 2-173 (350)
130 PRK05660 HemN family oxidoredu 36.0 3.9E+02 0.0084 25.4 11.5 75 94-178 166-245 (378)
131 PRK14456 ribosomal RNA large s 35.9 2.2E+02 0.0049 27.0 8.5 78 148-225 259-353 (368)
132 cd00959 DeoC 2-deoxyribose-5-p 35.9 1.2E+02 0.0027 25.9 6.4 73 37-118 128-203 (203)
133 PRK08207 coproporphyrinogen II 35.7 4.1E+02 0.0088 26.4 10.6 151 122-283 165-344 (488)
134 TIGR01182 eda Entner-Doudoroff 35.7 2.9E+02 0.0063 23.9 10.4 102 150-283 19-120 (204)
135 PRK01313 rnpA ribonuclease P; 35.6 2.1E+02 0.0046 22.8 7.1 63 84-162 47-113 (129)
136 PF00682 HMGL-like: HMGL-like 35.5 3E+02 0.0064 23.9 11.9 141 103-285 14-176 (237)
137 COG2861 Uncharacterized protei 35.1 1.5E+02 0.0032 26.5 6.5 94 121-225 78-184 (250)
138 PLN02363 phosphoribosylanthran 35.1 1.7E+02 0.0038 26.2 7.3 75 100-198 56-131 (256)
139 PRK09061 D-glutamate deacylase 34.9 4.7E+02 0.01 26.0 11.2 112 42-175 171-286 (509)
140 PRK08208 coproporphyrinogen II 34.7 4.3E+02 0.0094 25.5 12.5 164 108-283 28-216 (430)
141 PRK09613 thiH thiamine biosynt 34.7 2.2E+02 0.0048 28.1 8.5 106 100-223 116-241 (469)
142 COG0042 tRNA-dihydrouridine sy 34.7 3.8E+02 0.0083 24.9 12.2 131 37-189 76-223 (323)
143 TIGR03471 HpnJ hopanoid biosyn 34.6 4.5E+02 0.0097 25.7 11.6 124 145-283 224-361 (472)
144 PRK08599 coproporphyrinogen II 34.6 4E+02 0.0087 25.1 12.0 75 150-224 34-120 (377)
145 PRK02301 putative deoxyhypusin 34.5 3.1E+02 0.0068 25.5 9.0 163 11-223 13-194 (316)
146 PRK08208 coproporphyrinogen II 34.5 4E+02 0.0087 25.8 10.3 123 43-177 141-276 (430)
147 cd04731 HisF The cyclase subun 34.5 3.2E+02 0.0069 23.9 11.6 47 22-76 70-117 (243)
148 PRK07379 coproporphyrinogen II 34.4 3.5E+02 0.0076 25.9 9.8 125 43-177 115-256 (400)
149 COG2987 HutU Urocanate hydrata 34.4 77 0.0017 30.9 5.0 108 65-198 149-268 (561)
150 cd07943 DRE_TIM_HOA 4-hydroxy- 34.4 3.4E+02 0.0073 24.2 14.7 24 37-60 19-42 (263)
151 cd04743 NPD_PKS 2-Nitropropane 34.4 2.3E+02 0.0049 26.5 8.1 62 160-221 23-89 (320)
152 PF07287 DUF1446: Protein of u 34.3 1.5E+02 0.0032 28.2 6.9 88 153-251 11-100 (362)
153 PRK13111 trpA tryptophan synth 34.2 3.1E+02 0.0068 24.6 8.8 26 190-215 91-118 (258)
154 cd03323 D-glucarate_dehydratas 33.7 2E+02 0.0043 27.6 8.0 68 154-223 250-321 (395)
155 PRK13803 bifunctional phosphor 33.2 3.7E+02 0.008 27.5 10.1 95 101-218 13-108 (610)
156 PF09370 TIM-br_sig_trns: TIM- 33.2 80 0.0017 28.5 4.7 58 150-220 94-156 (268)
157 PRK10799 metal-binding protein 32.5 1E+02 0.0022 27.5 5.4 31 45-76 199-229 (247)
158 TIGR00321 dhys deoxyhypusine s 32.3 4.1E+02 0.0089 24.6 9.9 139 40-223 31-183 (301)
159 PF01784 NIF3: NIF3 (NGG1p int 32.2 34 0.00075 30.3 2.3 58 18-76 164-234 (241)
160 PRK14459 ribosomal RNA large s 32.2 4.3E+02 0.0093 25.2 9.7 144 65-225 191-359 (373)
161 cd03321 mandelate_racemase Man 32.0 4.3E+02 0.0093 24.7 12.8 145 39-219 142-293 (355)
162 PF00682 HMGL-like: HMGL-like 32.0 3.4E+02 0.0074 23.5 9.7 168 37-224 11-193 (237)
163 TIGR02932 vnfK_nitrog V-contai 31.7 5E+02 0.011 25.4 14.5 119 59-192 67-197 (457)
164 PRK14455 ribosomal RNA large s 31.7 2.6E+02 0.0057 26.4 8.2 77 149-225 244-337 (356)
165 PRK14017 galactonate dehydrata 31.3 4.6E+02 0.01 24.8 14.6 150 38-223 124-288 (382)
166 PRK08645 bifunctional homocyst 31.2 5.9E+02 0.013 26.0 18.4 210 37-285 40-286 (612)
167 PRK05660 HemN family oxidoredu 31.0 4.7E+02 0.01 24.8 13.2 109 164-283 57-182 (378)
168 PRK04820 rnpA ribonuclease P; 30.8 2.9E+02 0.0063 22.5 7.3 65 84-163 48-114 (145)
169 PF01964 ThiC: ThiC family; I 30.8 39 0.00085 32.3 2.4 145 37-229 73-229 (420)
170 TIGR02660 nifV_homocitr homoci 30.7 4.7E+02 0.01 24.7 12.2 96 99-218 20-130 (365)
171 COG2040 MHT1 Homocysteine/sele 30.7 2.7E+02 0.0059 25.6 7.6 216 38-285 41-297 (300)
172 TIGR00737 nifR3_yhdG putative 30.7 4.3E+02 0.0093 24.3 13.3 134 37-196 72-222 (319)
173 TIGR00290 MJ0570_dom MJ0570-re 30.6 3.6E+02 0.0077 23.7 8.3 88 204-304 75-172 (223)
174 PRK14332 (dimethylallyl)adenos 30.5 5.2E+02 0.011 25.3 10.3 128 145-283 180-326 (449)
175 PF03102 NeuB: NeuB family; I 30.5 1.8E+02 0.0039 25.9 6.5 66 204-284 59-135 (241)
176 COG3653 N-acyl-D-aspartate/D-g 30.0 5.4E+02 0.012 25.3 16.2 79 42-129 184-278 (579)
177 PRK02910 light-independent pro 29.9 5.7E+02 0.012 25.5 13.1 111 63-190 67-191 (519)
178 PRK15072 bifunctional D-altron 29.8 3.8E+02 0.0083 25.7 9.2 68 154-223 246-317 (404)
179 PF15221 LEP503: Lens epitheli 29.7 79 0.0017 21.1 3.0 27 7-33 10-36 (61)
180 PRK09249 coproporphyrinogen II 29.7 5.3E+02 0.012 25.1 13.0 151 122-283 51-226 (453)
181 TIGR01378 thi_PPkinase thiamin 29.6 2E+02 0.0043 24.7 6.6 57 204-284 50-110 (203)
182 TIGR00539 hemN_rel putative ox 29.1 4.8E+02 0.011 24.4 12.8 150 123-283 3-175 (360)
183 PRK00396 rnpA ribonuclease P; 29.0 2.8E+02 0.006 22.1 6.8 65 84-163 46-112 (130)
184 COG2179 Predicted hydrolase of 28.6 2.8E+02 0.0062 23.3 6.8 39 150-189 48-86 (175)
185 PRK00507 deoxyribose-phosphate 28.5 2.5E+02 0.0054 24.6 7.0 73 37-119 133-209 (221)
186 PF01408 GFO_IDH_MocA: Oxidore 28.5 2.6E+02 0.0055 21.0 9.7 87 156-251 15-115 (120)
187 PF01118 Semialdhyde_dh: Semia 28.4 78 0.0017 24.5 3.5 28 37-64 74-101 (121)
188 PRK05904 coproporphyrinogen II 28.3 5.1E+02 0.011 24.4 10.2 98 175-283 71-178 (353)
189 cd01821 Rhamnogalacturan_acety 28.2 3.1E+02 0.0068 22.7 7.6 88 165-252 36-149 (198)
190 PRK13015 3-dehydroquinate dehy 28.2 2.1E+02 0.0045 23.4 5.9 81 99-204 26-108 (146)
191 TIGR02082 metH 5-methyltetrahy 28.2 8.8E+02 0.019 27.1 13.0 94 113-225 378-475 (1178)
192 PRK01221 putative deoxyhypusin 28.1 4.9E+02 0.011 24.2 10.5 166 10-223 9-193 (312)
193 TIGR03700 mena_SCO4494 putativ 28.1 5E+02 0.011 24.3 12.2 138 100-282 80-224 (351)
194 PLN02775 Probable dihydrodipic 27.9 3.6E+02 0.0079 24.7 8.1 71 108-199 68-138 (286)
195 TIGR01210 conserved hypothetic 27.9 4.9E+02 0.011 24.0 13.6 184 87-317 72-263 (313)
196 COG4626 Phage terminase-like p 27.8 2.3E+02 0.0049 28.5 7.2 44 148-191 410-453 (546)
197 cd02070 corrinoid_protein_B12- 27.7 3.8E+02 0.0083 22.8 9.0 54 158-214 104-161 (201)
198 PRK14463 ribosomal RNA large s 27.4 3.6E+02 0.0078 25.4 8.4 78 148-225 231-325 (349)
199 PRK08195 4-hyroxy-2-oxovalerat 27.3 5.2E+02 0.011 24.2 11.5 111 97-221 20-135 (337)
200 PRK15408 autoinducer 2-binding 27.1 5.1E+02 0.011 24.0 11.5 76 84-182 22-97 (336)
201 TIGR01579 MiaB-like-C MiaB-lik 27.1 5.6E+02 0.012 24.5 11.4 130 144-284 163-314 (414)
202 PF07994 NAD_binding_5: Myo-in 26.9 1.1E+02 0.0023 28.3 4.5 147 101-277 131-283 (295)
203 cd00466 DHQase_II Dehydroquina 26.9 1.9E+02 0.0041 23.5 5.4 81 99-204 24-106 (140)
204 PRK14457 ribosomal RNA large s 26.9 5.4E+02 0.012 24.2 16.5 176 37-225 129-330 (345)
205 PF02679 ComA: (2R)-phospho-3- 26.5 3.4E+02 0.0075 24.2 7.5 78 39-127 83-168 (244)
206 PF07592 DDE_Tnp_ISAZ013: Rhod 26.4 99 0.0021 28.7 4.2 101 204-313 204-308 (311)
207 cd01974 Nitrogenase_MoFe_beta 26.4 6E+02 0.013 24.6 13.8 117 59-191 63-191 (435)
208 COG1751 Uncharacterized conser 26.3 3.8E+02 0.0082 22.2 7.9 101 150-264 12-123 (186)
209 PRK12323 DNA polymerase III su 26.1 3.2E+02 0.0069 28.4 8.0 69 100-186 105-175 (700)
210 COG2256 MGS1 ATPase related to 26.1 4.4E+02 0.0095 25.6 8.5 104 44-177 37-144 (436)
211 TIGR01088 aroQ 3-dehydroquinat 26.0 1.9E+02 0.0042 23.5 5.3 81 99-204 24-106 (141)
212 TIGR01182 eda Entner-Doudoroff 25.9 4.3E+02 0.0094 22.8 9.0 88 100-219 18-106 (204)
213 COG1064 AdhP Zn-dependent alco 25.8 5E+02 0.011 24.5 8.8 148 8-219 155-308 (339)
214 TIGR03551 F420_cofH 7,8-dideme 25.7 4.3E+02 0.0094 24.6 8.6 124 148-283 70-216 (343)
215 COG2102 Predicted ATPases of P 25.5 1.5E+02 0.0033 26.0 5.0 94 149-253 74-177 (223)
216 cd08568 GDPD_TmGDE_like Glycer 25.4 4.2E+02 0.0091 22.8 8.0 32 156-187 108-139 (226)
217 PLN02389 biotin synthase 25.3 6E+02 0.013 24.2 13.4 105 37-165 116-227 (379)
218 PLN02444 HMP-P synthase 25.2 7.3E+02 0.016 25.2 19.7 167 12-230 210-389 (642)
219 PF14871 GHL6: Hypothetical gl 25.1 70 0.0015 25.6 2.7 22 204-225 47-68 (132)
220 cd00885 cinA Competence-damage 24.9 3.1E+02 0.0068 22.8 6.8 63 42-111 20-83 (170)
221 COG2949 SanA Uncharacterized m 24.7 3.6E+02 0.0077 23.6 6.9 50 150-199 78-134 (235)
222 cd04740 DHOD_1B_like Dihydroor 24.5 5.3E+02 0.011 23.3 14.8 134 37-185 99-252 (296)
223 TIGR03217 4OH_2_O_val_ald 4-hy 24.5 5.8E+02 0.013 23.8 12.4 24 37-60 21-44 (333)
224 TIGR02080 O_succ_thio_ly O-suc 24.5 6.1E+02 0.013 24.0 10.8 72 152-224 102-176 (382)
225 PRK07379 coproporphyrinogen II 24.5 6.3E+02 0.014 24.2 11.6 99 174-283 80-190 (400)
226 PRK14331 (dimethylallyl)adenos 24.4 4.3E+02 0.0094 25.6 8.6 26 146-172 173-198 (437)
227 PRK07003 DNA polymerase III su 24.2 3.4E+02 0.0073 28.8 7.9 92 101-216 101-197 (830)
228 PRK06015 keto-hydroxyglutarate 24.2 4.7E+02 0.01 22.6 9.6 32 150-182 15-46 (201)
229 PF01876 RNase_P_p30: RNase P 24.0 1.7E+02 0.0036 23.7 4.8 122 153-294 14-144 (150)
230 COG1168 MalY Bifunctional PLP- 23.9 1.5E+02 0.0033 28.2 5.0 76 37-129 38-116 (388)
231 COG0422 ThiC Thiamine biosynth 23.8 6.6E+02 0.014 24.1 17.4 145 37-229 75-231 (432)
232 PRK12569 hypothetical protein; 23.6 3.2E+02 0.0069 24.5 6.7 78 24-116 11-99 (245)
233 PRK14461 ribosomal RNA large s 23.4 5.3E+02 0.011 24.6 8.6 144 65-225 183-352 (371)
234 PF05049 IIGP: Interferon-indu 23.3 1.7E+02 0.0036 28.0 5.2 58 65-129 129-200 (376)
235 PRK03971 putative deoxyhypusin 23.3 6.3E+02 0.014 23.7 9.8 176 7-223 15-213 (334)
236 cd00945 Aldolase_Class_I Class 23.3 4.2E+02 0.0091 21.7 7.5 78 39-121 64-147 (201)
237 TIGR02127 pyrF_sub2 orotidine 23.1 5.6E+02 0.012 23.1 12.3 154 101-281 36-205 (261)
238 PRK02083 imidazole glycerol ph 23.1 5.2E+02 0.011 22.7 13.4 64 154-217 186-251 (253)
239 COG0626 MetC Cystathionine bet 23.0 4.7E+02 0.01 25.2 8.3 80 150-230 112-194 (396)
240 PRK09490 metH B12-dependent me 23.0 1.1E+03 0.024 26.5 12.5 58 168-225 433-491 (1229)
241 PRK03459 rnpA ribonuclease P; 22.8 3.8E+02 0.0082 21.0 6.9 64 84-163 48-114 (122)
242 PF01487 DHquinase_I: Type I 3 22.6 5E+02 0.011 22.3 12.4 120 37-182 72-191 (224)
243 COG1751 Uncharacterized conser 22.4 2.8E+02 0.006 23.0 5.6 71 39-118 13-85 (186)
244 TIGR02931 anfK_nitrog Fe-only 22.2 7.5E+02 0.016 24.2 14.7 116 60-191 71-199 (461)
245 COG0135 TrpF Phosphoribosylant 22.2 5.2E+02 0.011 22.4 9.4 87 101-218 12-102 (208)
246 PF00290 Trp_syntA: Tryptophan 22.2 1.8E+02 0.004 26.1 5.1 71 204-285 130-221 (259)
247 PRK14338 (dimethylallyl)adenos 22.2 6.9E+02 0.015 24.4 9.6 45 11-59 10-54 (459)
248 PRK06015 keto-hydroxyglutarate 22.1 2.5E+02 0.0055 24.2 5.7 88 100-219 14-102 (201)
249 TIGR03586 PseI pseudaminic aci 22.1 6.5E+02 0.014 23.5 11.0 113 37-180 74-207 (327)
250 COG3623 SgaU Putative L-xylulo 22.1 1.7E+02 0.0037 26.1 4.6 72 20-94 66-155 (287)
251 PF01081 Aldolase: KDPG and KH 22.0 2.5E+02 0.0054 24.1 5.7 123 150-304 19-150 (196)
252 PF13380 CoA_binding_2: CoA bi 22.0 3.7E+02 0.0081 20.6 6.7 21 201-221 89-109 (116)
253 PF03851 UvdE: UV-endonuclease 21.9 3.4E+02 0.0075 24.7 6.8 79 40-128 45-153 (275)
254 PRK08574 cystathionine gamma-s 21.8 6.8E+02 0.015 23.7 9.2 51 175-225 125-178 (385)
255 PF02581 TMP-TENI: Thiamine mo 21.7 2E+02 0.0042 24.0 5.0 54 164-222 93-157 (180)
256 PRK14469 ribosomal RNA large s 21.7 5.2E+02 0.011 24.1 8.3 77 149-225 233-325 (343)
257 TIGR03597 GTPase_YqeH ribosome 21.6 6.8E+02 0.015 23.5 11.6 84 84-184 90-176 (360)
258 PRK11865 pyruvate ferredoxin o 21.6 5.8E+02 0.013 23.5 8.3 79 42-126 164-242 (299)
259 PRK07328 histidinol-phosphatas 21.6 5.8E+02 0.013 22.7 15.0 122 41-172 19-161 (269)
260 cd00248 Mth938-like Mth938-lik 21.4 3.2E+02 0.007 20.8 5.7 53 171-223 36-88 (109)
261 CHL00040 rbcL ribulose-1,5-bis 21.4 6.5E+02 0.014 24.9 9.0 126 86-225 166-299 (475)
262 COG1795 Formaldehyde-activatin 21.4 1.7E+02 0.0036 24.1 4.1 34 62-96 79-116 (170)
263 PRK14468 ribosomal RNA large s 21.3 6E+02 0.013 23.8 8.6 77 149-225 228-321 (343)
264 PF13378 MR_MLE_C: Enolase C-t 21.2 1.9E+02 0.0041 21.7 4.4 51 172-225 3-56 (111)
265 PRK05628 coproporphyrinogen II 21.0 7E+02 0.015 23.4 12.4 59 166-224 60-128 (375)
266 PLN03228 methylthioalkylmalate 20.9 7.6E+02 0.017 24.6 9.5 97 104-222 107-230 (503)
267 COG0327 Uncharacterized conser 20.9 2.6E+02 0.0056 25.0 5.8 36 40-76 197-232 (250)
268 PRK13602 putative ribosomal pr 20.9 2.9E+02 0.0063 19.9 5.1 58 157-221 3-60 (82)
269 PRK05406 LamB/YcsF family prot 20.8 4.2E+02 0.0091 23.7 6.9 73 28-116 13-96 (246)
270 PRK05395 3-dehydroquinate dehy 20.8 2.5E+02 0.0055 22.9 5.1 81 99-204 26-108 (146)
271 cd00886 MogA_MoaB MogA_MoaB fa 20.7 4.5E+02 0.0098 21.2 7.4 47 43-93 22-69 (152)
272 PRK09853 putative selenate red 20.6 2.7E+02 0.0059 30.4 6.7 58 92-170 242-299 (1019)
273 cd07940 DRE_TIM_IPMS 2-isoprop 20.6 5.6E+02 0.012 22.8 8.0 36 29-64 132-167 (268)
274 COG1131 CcmA ABC-type multidru 20.6 3.5E+02 0.0077 24.6 6.8 66 103-184 140-205 (293)
275 PRK02515 psbU photosystem II c 20.5 28 0.0006 27.8 -0.5 37 287-324 54-90 (132)
276 cd04742 NPD_FabD 2-Nitropropan 20.5 3.9E+02 0.0085 25.9 7.2 66 156-222 30-103 (418)
277 PRK14326 (dimethylallyl)adenos 20.5 8.2E+02 0.018 24.3 9.8 68 146-214 184-264 (502)
278 PRK09427 bifunctional indole-3 20.4 4.5E+02 0.0098 25.8 7.7 31 166-198 307-338 (454)
279 COG3457 Predicted amino acid r 20.4 4E+02 0.0086 24.9 6.8 62 103-175 103-165 (353)
280 cd03325 D-galactonate_dehydrat 20.3 7.1E+02 0.015 23.2 15.3 148 38-221 123-285 (352)
281 cd07939 DRE_TIM_NifV Streptomy 20.3 6.1E+02 0.013 22.4 12.6 97 99-219 17-128 (259)
282 PRK14460 ribosomal RNA large s 20.1 6.5E+02 0.014 23.7 8.6 145 65-225 170-332 (354)
283 PF01113 DapB_N: Dihydrodipico 20.1 2.6E+02 0.0056 21.7 5.1 43 150-192 77-119 (124)
284 PRK08247 cystathionine gamma-s 20.1 7.2E+02 0.016 23.2 10.3 58 166-224 116-176 (366)
285 PRK10508 hypothetical protein; 20.1 2.3E+02 0.0049 26.5 5.4 22 99-120 286-307 (333)
286 cd05560 Xcc1710_like Xcc1710_l 20.0 3.3E+02 0.0071 20.8 5.5 52 171-223 37-88 (109)
287 TIGR03315 Se_ygfK putative sel 20.0 2.8E+02 0.006 30.3 6.6 58 92-170 240-297 (1012)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3e-67 Score=467.70 Aligned_cols=266 Identities=41% Similarity=0.713 Sum_probs=245.7
Q ss_pred CCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEE
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIA 91 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~ 91 (328)
+++.+|++| .+||.||||||++++ .+.+.+.|..|++.|+|+||||..||||+.+|+|+++. |+ +|+++||+
T Consensus 3 ~~~~~l~~g-~~iP~iGlGt~~~~~--~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelFit 74 (280)
T COG0656 3 KTKVTLNNG-VEIPAIGLGTWQIGD--DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELFIT 74 (280)
T ss_pred CceeecCCC-CcccCcceEeeecCC--chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeEEE
Confidence 566888999 889999999999753 22389999999999999999999999999999999985 77 89999999
Q ss_pred eccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEe
Q 020299 92 SKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (328)
Q Consensus 92 tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 171 (328)
||+|+.+.+++.+.+++++||++||+||+|+|+||||... . ...+.++|++||+++++||||+|||
T Consensus 75 tKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~-------------~~~~~etw~alE~l~~~G~ir~IGV 140 (280)
T COG0656 75 TKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K-------------YVVIEETWKALEELVDEGLIRAIGV 140 (280)
T ss_pred eecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c-------------CccHHHHHHHHHHHHhcCCccEEEe
Confidence 9999999999999999999999999999999999999653 1 0117899999999999999999999
Q ss_pred cCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCC
Q 020299 172 SNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 172 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s 251 (328)
|||+.++++++++..++.|++||++|||+.++.+++++|+++||.++|||||+. |.. ++..+.+.+||++||.|
T Consensus 141 SNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~~-----l~~~~~l~~Ia~k~g~t 214 (280)
T COG0656 141 SNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GGK-----LLDNPVLAEIAKKYGKT 214 (280)
T ss_pred eCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-ccc-----cccChHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999996 431 57788999999999999
Q ss_pred HHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCCCCCCc
Q 020299 252 VAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFNWELTDEETKKISDIPQSRGC 305 (328)
Q Consensus 252 ~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 305 (328)
++|++|||++++|+++||.+++++|++||++++++.||++|++.|+++......
T Consensus 215 ~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 215 PAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 999999999999999999999999999999999999999999999999987644
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=6.5e-66 Score=459.08 Aligned_cols=281 Identities=48% Similarity=0.785 Sum_probs=256.8
Q ss_pred eEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 020299 14 DVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (328)
Q Consensus 14 ~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK 93 (328)
+.+|++| .++|.||||||+ .++.++...|..|++.||||||||..|++|..+|+||++.+.++.+ +|+++||+||
T Consensus 6 ~~~Ln~G-~~mP~iGlGTw~---~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTSK 80 (300)
T KOG1577|consen 6 TVKLNNG-FKMPIIGLGTWQ---SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITSK 80 (300)
T ss_pred eEeccCC-CccceeeeEecc---cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeeec
Confidence 7899999 999999999999 5778999999999999999999999999999999999999977655 8999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCc--cC-CCCCccHHHHHHHHHHHHHcCCcceEE
Q 020299 94 LWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK--KE-DFLPMDFKSVWEAMEECQNLGYTKAIG 170 (328)
Q Consensus 94 ~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~L~~l~~~Gkir~iG 170 (328)
+|+..+.++.++.++++||++||+||+|+|++|||....+ ..+.+ .+ .....+..++|++||+++++|++|+||
T Consensus 81 lw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIG 157 (300)
T KOG1577|consen 81 LWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIG 157 (300)
T ss_pred cCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHHHcCCceEee
Confidence 9999889999999999999999999999999999987743 11111 11 122246889999999999999999999
Q ss_pred ecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCC
Q 020299 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (328)
Q Consensus 171 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~ 250 (328)
||||+..++++++..++++|++||+++||+.++.+++++|+++||.|.||||||.++. +. +++.++.+.+||++||+
T Consensus 158 VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~k 234 (300)
T KOG1577|consen 158 VSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNK 234 (300)
T ss_pred eecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999998443 12 67889999999999999
Q ss_pred CHHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCCCCCCc
Q 020299 251 TVAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFNWELTDEETKKISDIPQSRGC 305 (328)
Q Consensus 251 s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 305 (328)
|++|++|||++++|++|||.+++++||+||++++++.||++|++.|+.+....|.
T Consensus 235 t~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 235 TPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 9999999999999999999999999999999999999999999999998887765
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.4e-60 Score=427.74 Aligned_cols=284 Identities=29% Similarity=0.415 Sum_probs=255.8
Q ss_pred CCCCCCCCeEEcCCCCcccccceeeCCcCC---C-CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHh
Q 020299 6 EMGSISIPDVPLKSSNRRMPVLGLGTAASP---F-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALS 78 (328)
Q Consensus 6 ~m~~~~~~~~~L~~~~~~vs~lglG~~~~~---~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~ 78 (328)
.+....|++++||++|++||++|||||.+. + .+.+++.+++++|+++|+|+||||++|| ||..+|++|+++
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~-- 83 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR-- 83 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc--
Confidence 344556999999999999999999995432 2 5889999999999999999999999999 899999999987
Q ss_pred cCCCCCCCcEEEEeccCC-------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHH
Q 020299 79 TGIIKSRDELFIASKLWC-------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFK 151 (328)
Q Consensus 79 ~~~~~~R~~~~I~tK~~~-------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 151 (328)
+. +|++++|+||++. ...+...+...++.||+|||++|||+||+||+|...| .+
T Consensus 84 -~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p----------------ie 144 (336)
T KOG1575|consen 84 -GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP----------------IE 144 (336)
T ss_pred -CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC----------------HH
Confidence 54 7999999999842 3456788999999999999999999999999998776 89
Q ss_pred HHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCCCCC
Q 020299 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGT 228 (328)
Q Consensus 152 ~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~G~ 228 (328)
+++++|.+++++||||+||+|+++++++.++...++++++++|++||++.++ .+++++|++.||++++||||++ |+
T Consensus 145 e~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~ 223 (336)
T KOG1575|consen 145 ETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GL 223 (336)
T ss_pred HHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ce
Confidence 9999999999999999999999999999999999988899999999999997 5699999999999999999998 99
Q ss_pred CCCCCccc-----------------C----------hHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHH
Q 020299 229 IWGSNRVM-----------------E----------CEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKE 279 (328)
Q Consensus 229 l~~~~~~~-----------------~----------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~e 279 (328)
|+++.... . .+.+.++|+++|+|++|+||+|+++++ ++||||+++++||+|
T Consensus 224 Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~e 303 (336)
T KOG1575|consen 224 LTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKE 303 (336)
T ss_pred eccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHH
Confidence 99753210 0 255889999999999999999999998 899999999999999
Q ss_pred hhcccCCcCCHHHHHHhhcCCCCCCccCcccc
Q 020299 280 NLDIFNWELTDEETKKISDIPQSRGCLGEDYI 311 (328)
Q Consensus 280 nl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~~ 311 (328)
|++|+...|+++++..|+++.+.....+..+.
T Consensus 304 ni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 304 NIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 99999999999999999999998888777663
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.6e-60 Score=435.28 Aligned_cols=267 Identities=32% Similarity=0.479 Sum_probs=239.2
Q ss_pred CCeEEcCCCCcccccceeeCCcCCC----CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCC
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKS 84 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~ 84 (328)
|++++||++|++||+||||||.+++ .+.+++.++|++|+++|||+||||+.|| ||++||+||+.+ + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 6889999988999999999999986 3344667799999999999999999999 999999999975 2 3
Q ss_pred CCcEEEEeccCC----------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH
Q 020299 85 RDELFIASKLWC----------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (328)
Q Consensus 85 R~~~~I~tK~~~----------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (328)
|++++|+||++. .+.++++|+++++.||+||||||||+||+|||+...+ .++++
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p----------------~~e~~ 138 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP----------------IEETL 138 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC----------------HHHHH
Confidence 899999999943 2458999999999999999999999999999987544 78899
Q ss_pred HHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCC
Q 020299 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGS 232 (328)
Q Consensus 155 ~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~ 232 (328)
.+|.+|+++||||+||+||++.+++.++++.+ .+++++|.+||++.++ .+++++|+++||++++||||++ |+|+++
T Consensus 139 ~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk 216 (316)
T COG0667 139 EALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGK 216 (316)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCC
Confidence 99999999999999999999999999999986 5678999999999975 4599999999999999999998 999986
Q ss_pred Ccc----------c------------ChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcC
Q 020299 233 NRV----------M------------ECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWEL 288 (328)
Q Consensus 233 ~~~----------~------------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L 288 (328)
... . ....+.++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++..|
T Consensus 217 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L 296 (316)
T COG0667 217 YLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKL 296 (316)
T ss_pred cCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCC
Confidence 332 0 0145889999999999999999999998 789999999999999999999999
Q ss_pred CHHHHHHhhcCCCC
Q 020299 289 TDEETKKISDIPQS 302 (328)
Q Consensus 289 ~~~~~~~l~~~~~~ 302 (328)
++++++.|++....
T Consensus 297 ~~~~~~~l~~~~~~ 310 (316)
T COG0667 297 SEEELAALDEISAE 310 (316)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999987653
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.4e-58 Score=417.82 Aligned_cols=253 Identities=33% Similarity=0.597 Sum_probs=230.1
Q ss_pred ccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChh
Q 020299 23 RMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRE 102 (328)
Q Consensus 23 ~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~ 102 (328)
+||+||||||.+ +.+++.++++.|++.|||+||||+.||+|+.+|++|+.. ++ +|+++||+||++....+++
T Consensus 2 ~vs~lglGt~~~---~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~ 73 (267)
T PRK11172 2 SIPAFGLGTFRL---KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKD 73 (267)
T ss_pred CCCCEeeEcccc---ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHH
Confidence 689999999985 457899999999999999999999999999999999865 55 6999999999987777889
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHH
Q 020299 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 182 (328)
.+++++++||+|||+||||+|++|||+... ....+++|++|++++++||||+||||||+.++++++
T Consensus 74 ~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 74 KLIPSLKESLQKLRTDYVDLTLIHWPSPND--------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCCC--------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 999999999999999999999999986421 123778999999999999999999999999999999
Q ss_pred HHhCCC-CCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHh
Q 020299 183 LATAKI-PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAY 261 (328)
Q Consensus 183 ~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l 261 (328)
++..+. +++++|++||++.++.+++++|+++||++++|+||++ |.+. ..+.+.++|+++|+|++|+||+|++
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~l 212 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWAM 212 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 887654 6789999999999989999999999999999999997 7543 3467999999999999999999999
Q ss_pred hCCcEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCCCCCC
Q 020299 262 EQGVCVVVKSFNKERMKENLDIFNWELTDEETKKISDIPQSRG 304 (328)
Q Consensus 262 ~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 304 (328)
++++++|+|+++++|+++|+++++++||+++++.|+++.++.+
T Consensus 213 ~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 213 QLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred hCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 9998899999999999999999999999999999999987543
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.2e-57 Score=423.90 Aligned_cols=279 Identities=24% Similarity=0.390 Sum_probs=238.0
Q ss_pred CCCCCCCCCCCCCeEEcCCCCcccccceeeCCc-CCC-CChhHHHHHHHHHHHcCCCeEeCCCCCC-----ChHHHHHHH
Q 020299 1 MDQGSEMGSISIPDVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ-----TEQPLGDAI 73 (328)
Q Consensus 1 ~~~~~~m~~~~~~~~~L~~~~~~vs~lglG~~~-~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-----sE~~lG~al 73 (328)
|+.++.+ ..|++++||++|++||+||||||. ++. .+.+++.++|+.|++.|||+||||+.|| ||+.||++|
T Consensus 4 ~~~~~~~--~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l 81 (346)
T PRK09912 4 LANPERY--GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLL 81 (346)
T ss_pred eccCCCC--CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHH
Confidence 3445554 359999999999999999999997 543 3556789999999999999999999998 799999999
Q ss_pred HHHHhcCCCCCCCcEEEEeccC----C----CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCC
Q 020299 74 AEALSTGIIKSRDELFIASKLW----C----SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDF 145 (328)
Q Consensus 74 ~~~~~~~~~~~R~~~~I~tK~~----~----~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 145 (328)
++.. +. .|+++||+||++ . .+.+++.+++++++||+|||+||||+|++|||+...+
T Consensus 82 ~~~~--~~--~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~------------ 145 (346)
T PRK09912 82 REDF--AA--YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP------------ 145 (346)
T ss_pred Hhcc--cC--CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC------------
Confidence 8530 11 599999999974 2 1356899999999999999999999999999965332
Q ss_pred CCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHh---CCCCCeeeccccCccccc---HHHHHHHHHcCCeEEE
Q 020299 146 LPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT---AKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAA 219 (328)
Q Consensus 146 ~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a 219 (328)
.+++|++|++|+++||||+||||||++++++++.+. ..+++.++|++||++++. .+++++|+++||++++
T Consensus 146 ----~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via 221 (346)
T PRK09912 146 ----MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIA 221 (346)
T ss_pred ----HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEE
Confidence 789999999999999999999999999988766543 356788999999999974 4799999999999999
Q ss_pred eccCCCCCCCCCCCc----------------------ccC------hHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEee
Q 020299 220 YAPLGARGTIWGSNR----------------------VME------CEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVV 269 (328)
Q Consensus 220 ~~pl~~~G~l~~~~~----------------------~~~------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~ 269 (328)
|+||++ |+|++... ... .+.+.++|+++|+|++|+||+|++++| +++|+
T Consensus 222 ~spl~~-G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~ 300 (346)
T PRK09912 222 FTPLAQ-GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLI 300 (346)
T ss_pred ehhhcC-ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEe
Confidence 999998 99986421 000 256888999999999999999999998 77999
Q ss_pred CCCCHHHHHHhhcccC-CcCCHHHHHHhhcCCCC
Q 020299 270 KSFNKERMKENLDIFN-WELTDEETKKISDIPQS 302 (328)
Q Consensus 270 g~~~~~~l~enl~a~~-~~L~~~~~~~l~~~~~~ 302 (328)
|+++++||++|++++. ++|++++++.|+++.++
T Consensus 301 G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 301 GASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred CCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 9999999999999984 79999999999998654
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.6e-57 Score=419.93 Aligned_cols=264 Identities=27% Similarity=0.394 Sum_probs=230.6
Q ss_pred eEEcCCCCcccccceeeCCc-CCC-CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcE
Q 020299 14 DVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (328)
Q Consensus 14 ~~~L~~~~~~vs~lglG~~~-~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~~~ 88 (328)
||+||++|++||+||||||. +++ .+.+++.++|+.|+++|||+||||+.|| ||+.||++|+.. +. +|+++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~~ 75 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSSY 75 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--CcccE
Confidence 57889888999999999997 333 5778899999999999999999999998 899999999864 43 59999
Q ss_pred EEEeccCC-------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 89 FIASKLWC-------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 89 ~I~tK~~~-------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
+|+||++. .+.+++.+++++++||+|||+||||+|++|||+... ..+++|++|++|+
T Consensus 76 ~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~----------------~~~e~~~aL~~l~ 139 (317)
T TIGR01293 76 VITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT----------------PMEETVRAMTYVI 139 (317)
T ss_pred EEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC----------------CHHHHHHHHHHHH
Confidence 99999742 235789999999999999999999999999997533 2789999999999
Q ss_pred HcCCcceEEecCCChhHHHHHHHhCC----CCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCCCCCCCCCCc
Q 020299 162 NLGYTKAIGVSNFSCKKLGDILATAK----IPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWGSNR 234 (328)
Q Consensus 162 ~~Gkir~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~ 234 (328)
++||||+||+|||+.+++.++...+. ++|+++|++||++.++ ..++++|+++||++++|+||++ |+|++...
T Consensus 140 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~ 218 (317)
T TIGR01293 140 NQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYD 218 (317)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCC
Confidence 99999999999999999887765432 5788999999999885 3799999999999999999998 99986421
Q ss_pred c------------c-----------------ChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcc
Q 020299 235 V------------M-----------------ECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDI 283 (328)
Q Consensus 235 ~------------~-----------------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a 283 (328)
. . ..+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a 298 (317)
T TIGR01293 219 SGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGS 298 (317)
T ss_pred CCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHH
Confidence 0 0 0156889999999999999999999997 5799999999999999999
Q ss_pred cCC--cCCHHHHHHhhcC
Q 020299 284 FNW--ELTDEETKKISDI 299 (328)
Q Consensus 284 ~~~--~L~~~~~~~l~~~ 299 (328)
++. +||+++++.|+++
T Consensus 299 ~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 299 LQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred hhccCCCCHHHHHHHHhh
Confidence 987 9999999999875
No 8
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.3e-56 Score=407.87 Aligned_cols=263 Identities=36% Similarity=0.688 Sum_probs=236.3
Q ss_pred CCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEE
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIA 91 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~ 91 (328)
.+++.|.+| +.||+||||||++ +.+++.++|++|++.|+|+||||+.||+|+.+|++|+.. ++ +|++++|+
T Consensus 4 ~~~~~l~~g-~~v~~lglG~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~ 74 (275)
T PRK11565 4 PTVIKLQDG-NVMPQLGLGVWQA---SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFIT 74 (275)
T ss_pred CceEEcCCC-CccCCcceECccC---CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEE
Confidence 445678766 9999999999984 568899999999999999999999999999999999965 54 69999999
Q ss_pred eccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEe
Q 020299 92 SKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (328)
Q Consensus 92 tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 171 (328)
||++.. +++.+++++++||++||+||||+|++|+|+... ....++|++|++|+++||||+|||
T Consensus 75 tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~---------------~~~~~~~~~l~~l~~~G~ir~iGv 137 (275)
T PRK11565 75 TKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAI---------------DHYVEAWKGMIELQKEGLIKSIGV 137 (275)
T ss_pred EEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCc---------------CcHHHHHHHHHHHHHcCCeeEEee
Confidence 999753 468999999999999999999999999996421 126799999999999999999999
Q ss_pred cCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCC
Q 020299 172 SNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 172 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s 251 (328)
|||+++++++++..+++.|.++|++|+++.++.+++++|+++||++++|+||++ |. ...+..+.+.++|+++|+|
T Consensus 138 Sn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s 212 (275)
T PRK11565 138 CNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKT 212 (275)
T ss_pred ccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCC
Confidence 999999999998877788999999999999888999999999999999999986 53 1234568899999999999
Q ss_pred HHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCCCCCCc
Q 020299 252 VAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFNWELTDEETKKISDIPQSRGC 305 (328)
Q Consensus 252 ~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 305 (328)
++|+||||+++++.++|+|+++++|+++|+++++++|++++++.|+++...+++
T Consensus 213 ~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 213 PAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred HHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 999999999999988999999999999999999999999999999999876654
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.3e-57 Score=422.69 Aligned_cols=282 Identities=26% Similarity=0.357 Sum_probs=236.2
Q ss_pred CCeEEcCCCCcccccceeeCCcCCC-CChhHHHHHHHHHHHcCCCeEeCCCCCC----------ChHHHHHHHHHHHhcC
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPF-SGSETTKLAILEAMKLGYRHFDTATLYQ----------TEQPLGDAIAEALSTG 80 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----------sE~~lG~al~~~~~~~ 80 (328)
|+|++||++|++||+||||||.+|. .+.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 6789999999999999999999875 5678899999999999999999999996 899999999853 3
Q ss_pred CCCCCCcEEEEeccCCC------------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCC--CCCCCCCccCCCC
Q 020299 81 IIKSRDELFIASKLWCS------------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKP--GSYEFPIKKEDFL 146 (328)
Q Consensus 81 ~~~~R~~~~I~tK~~~~------------~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~--~~~~~~~~~~~~~ 146 (328)
+|++++|+||++.. +.+++.+++++++||+|||+||||+|++|||+.... +...+....+ ..
T Consensus 78 ---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~-~~ 153 (346)
T PRK10625 78 ---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS-AP 153 (346)
T ss_pred ---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccc-cC
Confidence 59999999998531 357899999999999999999999999999965211 0000000000 00
Q ss_pred CccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhC---C-CCCeeeccccCccccc--HHHHHHHHHcCCeEEEe
Q 020299 147 PMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA---K-IPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAY 220 (328)
Q Consensus 147 ~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~ 220 (328)
...++++|++|++|+++||||+||+|||+..++.+++..+ . ..+.++|++||++++. .+++++|+++||++++|
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~ 233 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAY 233 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEe
Confidence 1247899999999999999999999999999988776532 2 3567899999999876 58999999999999999
Q ss_pred ccCCCCCCCCCCCc-----------cc-------------ChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCH
Q 020299 221 APLGARGTIWGSNR-----------VM-------------ECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNK 274 (328)
Q Consensus 221 ~pl~~~G~l~~~~~-----------~~-------------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~ 274 (328)
+||++ |+|++... .. ..+.+.++|+++|+|++|+||+|++++| +++|+|++++
T Consensus 234 spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~ 312 (346)
T PRK10625 234 SCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTM 312 (346)
T ss_pred ccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCH
Confidence 99998 99876421 01 0257889999999999999999999998 4689999999
Q ss_pred HHHHHhhcccCCcCCHHHHHHhhcCCC
Q 020299 275 ERMKENLDIFNWELTDEETKKISDIPQ 301 (328)
Q Consensus 275 ~~l~enl~a~~~~L~~~~~~~l~~~~~ 301 (328)
+||++|+++++++|++++++.|+++.+
T Consensus 313 ~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 313 EQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-54 Score=397.63 Aligned_cols=264 Identities=39% Similarity=0.591 Sum_probs=237.5
Q ss_pred eEEcCCCCcccccceeeCCcCCC--CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcE
Q 020299 14 DVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (328)
Q Consensus 14 ~~~L~~~~~~vs~lglG~~~~~~--~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~~~ 88 (328)
+++|+++|++||+||||||.++. .+.+++.++++.|++.|||+||||+.|| ||+.+|++|+.. + .|+++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~~ 74 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREEV 74 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCcE
Confidence 47889777999999999999875 3678999999999999999999999999 999999999964 1 39999
Q ss_pred EEEeccCCCC-----CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc
Q 020299 89 FIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (328)
Q Consensus 89 ~I~tK~~~~~-----~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 163 (328)
+|+||++... .+++.+++++++||++||+||||+|+||+|+.... ...++|++|+++|++
T Consensus 75 ~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~---------------~~~~~~~~l~~l~~~ 139 (285)
T cd06660 75 FIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP---------------DIEETLRALEELVKE 139 (285)
T ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC---------------CHHHHHHHHHHHHHc
Confidence 9999997654 57999999999999999999999999999965321 378999999999999
Q ss_pred CCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccH--HHHHHHHHcCCeEEEeccCCCCCCCCCCCcccC----
Q 020299 164 GYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQN--KLREFCKAKDIQLAAYAPLGARGTIWGSNRVME---- 237 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~---- 237 (328)
|+||+||||||+++.+.++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+++......
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~ 218 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPE 218 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCCh
Confidence 99999999999999999999987778999999999999985 599999999999999999998 98875433221
Q ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcC
Q 020299 238 ---CEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTDEETKKISDI 299 (328)
Q Consensus 238 ---~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 299 (328)
...+..++++++++++|+|++|++++| +++|+|+++++|+++|+++..++|++++++.|+++
T Consensus 219 ~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 219 GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 367899999999999999999999996 88999999999999999999999999999999863
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=7.1e-55 Score=404.17 Aligned_cols=269 Identities=20% Similarity=0.292 Sum_probs=230.0
Q ss_pred eEEcCCCCcccccceeeCCcCCC----CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCC
Q 020299 14 DVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (328)
Q Consensus 14 ~~~L~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~ 86 (328)
||+||++|++||+||||||.+++ .+.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. +. +|+
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R~ 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PRE 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Ccc
Confidence 57889888999999999999873 5778899999999999999999999997 799999999864 43 699
Q ss_pred cEEEEeccCC----CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 020299 87 ELFIASKLWC----SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (328)
Q Consensus 87 ~~~I~tK~~~----~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 162 (328)
++||+||++. .+.+++.+++++++||++||+||||+|++|+|+...+ ....+++|++|++|++
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~~l~~l~~ 142 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-------------DQIVNETIPALQKLKE 142 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-------------hhhHHHHHHHHHHHHH
Confidence 9999999864 2567999999999999999999999999999863211 1235689999999999
Q ss_pred cCCcceEEecCCChhHHHHHHHhCC---CCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcc-c-
Q 020299 163 LGYTKAIGVSNFSCKKLGDILATAK---IPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIWGSNRV-M- 236 (328)
Q Consensus 163 ~Gkir~iGvS~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~-~- 236 (328)
+||||+||+|||++++++.+..... +++.++|+.||+..+. .+++++|+++||++++|+||++ |+|++.... .
T Consensus 143 ~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~ 221 (314)
T PLN02587 143 SGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWH 221 (314)
T ss_pred CCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCC
Confidence 9999999999999998887765432 3455678899887654 6899999999999999999998 999864211 0
Q ss_pred --------ChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccC----CcCCHHHHHHhhcCCC
Q 020299 237 --------ECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFN----WELTDEETKKISDIPQ 301 (328)
Q Consensus 237 --------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~----~~L~~~~~~~l~~~~~ 301 (328)
..+.+.++|+++|+|++|+||+|++++| ++||+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 222 ~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 222 PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 0245678999999999999999999998 578999999999999999976 3799999999998875
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9.8e-54 Score=391.01 Aligned_cols=254 Identities=36% Similarity=0.596 Sum_probs=220.7
Q ss_pred cceeeCCcCCC--CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEecc-----C
Q 020299 26 VLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKL-----W 95 (328)
Q Consensus 26 ~lglG~~~~~~--~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~~~~I~tK~-----~ 95 (328)
+||||||++++ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. .. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 58999999974 8899999999999999999999999993 999999999982 33 79999999999 5
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC
Q 020299 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (328)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~ 175 (328)
....+++.+++++++||++||+||||+|++|+|+.... ...++|++|++|+++|+||+||||||+
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED---------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS---------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred cccccccccccccccccccccccchhcccccccccccc---------------ccchhhhhhhhcccccccccccccccc
Confidence 66788999999999999999999999999999975431 388999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCeeeccccCcccc--cHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcc--------------cChH
Q 020299 176 CKKLGDILATAKIPPAANQVEMNPLWQ--QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRV--------------MECE 239 (328)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~--------------~~~~ 239 (328)
++.++.+.....++|+++|++||++.+ ..+++++|+++||++++|+|+++ |.|++.... ...+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 999999977788899999999999943 48999999999999999999998 998754321 4567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCC
Q 020299 240 VLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTDEETKKISDIP 300 (328)
Q Consensus 240 ~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 300 (328)
.+.++++++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++||+++++.|+++.
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 8999999999999999999999875 899999999999999999999999999999999874
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-53 Score=387.34 Aligned_cols=259 Identities=22% Similarity=0.310 Sum_probs=223.4
Q ss_pred eEEcCCCCcccccceeeCCcCCC-------CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCC
Q 020299 14 DVPLKSSNRRMPVLGLGTAASPF-------SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIK 83 (328)
Q Consensus 14 ~~~L~~~~~~vs~lglG~~~~~~-------~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~ 83 (328)
++.|+ | ++||+||||||++++ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++++.
T Consensus 9 ~~~l~-g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------- 78 (290)
T PRK10376 9 TFTLG-G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------- 78 (290)
T ss_pred ceecC-C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc--------
Confidence 35566 5 999999999999863 2567899999999999999999999998 68999999963
Q ss_pred CCCcEEEEeccC---------CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH
Q 020299 84 SRDELFIASKLW---------CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (328)
Q Consensus 84 ~R~~~~I~tK~~---------~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (328)
.|+++||+||++ ..+.+++.+++++++||+|||+||||+|++|++.... ++. .....++|
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h-----~p~------~~~~~~~~ 147 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGH-----GPA------EGSIEEPL 147 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCC-----CCC------CCCHHHHH
Confidence 599999999973 2356789999999999999999999999999863211 000 12377899
Q ss_pred HHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCCCCCC
Q 020299 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIWGSN 233 (328)
Q Consensus 155 ~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~ 233 (328)
++|++|+++||||+||||||++++++++.+.+ ++.++|++||++.+. .+++++|+++||++++|+||++ +.
T Consensus 148 ~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~----- 219 (290)
T PRK10376 148 TVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT----- 219 (290)
T ss_pred HHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC-----
Confidence 99999999999999999999999999988776 457999999999876 7799999999999999999974 32
Q ss_pred cccChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCCCC
Q 020299 234 RVMECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTDEETKKISDIPQS 302 (328)
Q Consensus 234 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 302 (328)
....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.++
T Consensus 220 -~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 220 -PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 123578999999999999999999999874 78999999999999999999999999999999987653
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.4e-51 Score=377.54 Aligned_cols=251 Identities=15% Similarity=0.166 Sum_probs=214.2
Q ss_pred cccccceeeCCcCCC-----------CChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcCCCCCCCcEE
Q 020299 22 RRMPVLGLGTAASPF-----------SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELF 89 (328)
Q Consensus 22 ~~vs~lglG~~~~~~-----------~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~al~~~~~~~~~~~R~~~~ 89 (328)
++||+||||||.+|+ .+.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. .+++++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 789999999999873 4678899999999999999999999999 899999999731 356789
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceE
Q 020299 90 IASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI 169 (328)
Q Consensus 90 I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 169 (328)
|+||. .+.+++.+++++++||+|||+||||+|++|+|+.... ...+++|++|++|+++||||+|
T Consensus 76 i~tk~--~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~--------------~~~~~~~~~l~~l~~~Gkir~i 139 (292)
T PRK14863 76 LSTVR--ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFG--------------PHGAALWERLQALKDQGLFAKI 139 (292)
T ss_pred ccccc--ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC--------------cchHHHHHHHHHHHHcCCcceE
Confidence 99985 2456899999999999999999999999999864211 1135789999999999999999
Q ss_pred EecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcc---------cC
Q 020299 170 GVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWGSNRV---------ME 237 (328)
Q Consensus 170 GvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~---------~~ 237 (328)
|||||+++++..+... .+|+++|++||+++++ .+++++|+++||++++|+||++ |+|++.... ..
T Consensus 140 GvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~ 216 (292)
T PRK14863 140 GVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGR 216 (292)
T ss_pred eeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHH
Confidence 9999999998877653 4788999999999986 3599999999999999999998 998753211 11
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhc
Q 020299 238 CEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTDEETKKISD 298 (328)
Q Consensus 238 ~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~ 298 (328)
...+.+++.++++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+.+|..
T Consensus 217 ~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 217 LSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 245667788889999999999999998 6789999999999999999998898887776653
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.8e-51 Score=349.18 Aligned_cols=267 Identities=25% Similarity=0.397 Sum_probs=240.7
Q ss_pred CCeEEcCCCCcccccceeeCCcCCC--CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCC
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~--~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~ 86 (328)
|.+++|++.|+++|++.+|+|++.. .++.+..+.++.|++.|||+||-|+.|| .|+.+|.+|+.. ++ -|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---lRe 75 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---LRE 75 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---hhh
Confidence 6788999788999999999999976 6677999999999999999999999999 899999999854 34 499
Q ss_pred cEEEEeccCC------------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH
Q 020299 87 ELFIASKLWC------------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (328)
Q Consensus 87 ~~~I~tK~~~------------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (328)
++.|+||++. .+.|.++|.+++|+||++|+|||+|+++||+||+. ++.+++.
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL----------------md~eeVA 139 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL----------------MDAEEVA 139 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc----------------CCHHHHH
Confidence 9999999953 36688999999999999999999999999999864 5689999
Q ss_pred HHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCCCCCCCC
Q 020299 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWG 231 (328)
Q Consensus 155 ~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~G~l~~ 231 (328)
+|+..|++.||||++|||||++.+++-+......+.+.||+++|+++.. ++.+++|+.+.|.++|||||++ |.++.
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~g-G~~F~ 218 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGG-GGLFL 218 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCC-Ccccc
Confidence 9999999999999999999999999999888888889999999999886 6799999999999999999998 55443
Q ss_pred CCccc--ChHHHHHHHHHhC-CCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCHHHHHHhhcCC
Q 020299 232 SNRVM--ECEVLKEIAEAKG-KTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTDEETKKISDIP 300 (328)
Q Consensus 232 ~~~~~--~~~~l~~la~~~~-~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 300 (328)
..+.+ -.+++..+|.++| .|..+++++|++.+| ..+|+|+.+++++++.++++++.||.++|-+|..+.
T Consensus 219 g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 219 GDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred CCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 23322 2588999999999 799999999999999 789999999999999999999999999999987654
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=336.91 Aligned_cols=265 Identities=23% Similarity=0.314 Sum_probs=227.5
Q ss_pred CCeEEcCCCCcccccceeeCCcCCC-----CChhHHHHHHHHHHHcCCCeEeCCCCC--C-ChHHHHHHHHHHHhcCCCC
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDTATLY--Q-TEQPLGDAIAEALSTGIIK 83 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~-----~~~~~~~~~l~~A~~~Gin~~DTA~~Y--g-sE~~lG~al~~~~~~~~~~ 83 (328)
|.||+++++|.++|.+|||+|+++. .+.+.+.++|++|++.||||||||..| | ||..+|+||+..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------- 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------- 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-------
Confidence 6789999988999999999999875 488899999999999999999999999 6 999999999975
Q ss_pred CCCcEEEEeccCC-CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWC-SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (328)
Q Consensus 84 ~R~~~~I~tK~~~-~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 162 (328)
.|++|+++||+-. .-.+++.+++-++++|++||+||+|+|+||..+... +..+.....++.++++|+
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~------------~~k~~~~g~~df~~kak~ 141 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET------------WEKIERLGVFDFLEKAKA 141 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH------------HHHHHccChHHHHHHHHh
Confidence 7999999999843 234679999999999999999999999999885421 111222347899999999
Q ss_pred cCCcceEEecCCC-hhHHHHHHHhCCCCCeeeccccCccccc----HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccC
Q 020299 163 LGYTKAIGVSNFS-CKKLGDILATAKIPPAANQVEMNPLWQQ----NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME 237 (328)
Q Consensus 163 ~Gkir~iGvS~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 237 (328)
+||||++|+|.|+ .+.+.+++.... ++++|+.||.+++. .+.+++|.++|++|+.++|+.+ |.|... .
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~----v 214 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN----V 214 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC----C
Confidence 9999999999999 667888888775 66889999988775 3789999999999999999998 655321 2
Q ss_pred hHHHHHHHHHhC--CCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCC--c-CCHHHHHHhhcCCCC
Q 020299 238 CEVLKEIAEAKG--KTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNW--E-LTDEETKKISDIPQS 302 (328)
Q Consensus 238 ~~~l~~la~~~~--~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~--~-L~~~~~~~l~~~~~~ 302 (328)
.+.+.++++++. .||+..|+||++++| .++++|+++++|++|||+.++. | ||++|++.|.++.+.
T Consensus 215 P~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 215 PEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred CHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 467899999986 589999999999999 7889999999999999999874 4 999999988877643
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.5e-45 Score=315.36 Aligned_cols=263 Identities=22% Similarity=0.262 Sum_probs=220.4
Q ss_pred CCCCCCeEEcCCCCcccccceeeCCcCCC----CChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcC
Q 020299 8 GSISIPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTG 80 (328)
Q Consensus 8 ~~~~~~~~~L~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~ 80 (328)
+.+.|++|.|+++|++||+||||+..++. .+.++....|..|+.+|||+||||+.|| ||..+|.++++.
T Consensus 18 ~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v---- 93 (342)
T KOG1576|consen 18 KVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV---- 93 (342)
T ss_pred HHHHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC----
Confidence 45679999999999999999999987655 4667777777779999999999999999 899999999965
Q ss_pred CCCCCCcEEEEeccCC--------CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHH
Q 020299 81 IIKSRDELFIASKLWC--------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKS 152 (328)
Q Consensus 81 ~~~~R~~~~I~tK~~~--------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 152 (328)
||+.+||+||++. .+++++.+++++++||+||++||+|++++|..+... ..++.+.+
T Consensus 94 ---PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap------------~ld~vl~E 158 (342)
T KOG1576|consen 94 ---PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAP------------NLDIVLNE 158 (342)
T ss_pred ---ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccc------------cccHHHHH
Confidence 9999999999964 478899999999999999999999999999875431 12456889
Q ss_pred HHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeec--cccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQ--VEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 153 ~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
++.+|+++|++||||+||++.++.+.+.++++...-..+++- ++|+..+.. -..+++.+.+|++|+.-++++. |+|
T Consensus 159 tlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLL 237 (342)
T KOG1576|consen 159 TLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLL 237 (342)
T ss_pred HHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHh
Confidence 999999999999999999999999999999877654444443 555554433 4667788899999999999998 999
Q ss_pred CCCCccc----------ChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCCcCCH
Q 020299 230 WGSNRVM----------ECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNWELTD 290 (328)
Q Consensus 230 ~~~~~~~----------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~ 290 (328)
+...+.. ....-.++|++.|+....+|++|.++.+ .++++|+++.++++.|+++....||.
T Consensus 238 t~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 238 TNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 8543221 1255667788899999999999999987 78999999999999999975557777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.54 E-value=2e-07 Score=80.39 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=96.4
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC----CceeEE------EeecCCCCCCCCC------CCCCccCCCCC
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL----EYIDLY------VIHWPVSSKPGSY------EFPIKKEDFLP 147 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~----d~iDl~------~lH~p~~~~~~~~------~~~~~~~~~~~ 147 (328)
.++++-+..|.+-.++.-+.++...++-++-+-. .-+|.+ ++|--.-..++-. ++..+..+...
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 4677778888876666666777776665543321 112211 1111000000000 00001111112
Q ss_pred ccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccC
Q 020299 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 148 ~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl 223 (328)
..+.+.|+.||+++.+|||..||+|.|+..+|+++++.+.+.|.++|+++.-+..- .+|..+|.+++|.+..++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 34778999999999999999999999999999999999999999999999988775 89999999999999998743
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.89 E-value=3.4 Score=35.40 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhC
Q 020299 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (328)
Q Consensus 107 ~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~ 186 (328)
.+++.|....-+.+|.+.+..-- .......+.|+++.+-|+---+++.||..+....-+-..
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL------------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~ 124 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL------------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLR 124 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH------------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhc
Confidence 34556666666677777765321 113334456778888898888999999988776655544
Q ss_pred CCCCeeeccccCccccc-------HHHHHHHHHcCCeEEEeccCCC
Q 020299 187 KIPPAANQVEMNPLWQQ-------NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 187 ~~~~~~~q~~~~~~~~~-------~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+-.|..-.++|+-++.. .++.++|++.|+.|.-..++..
T Consensus 125 GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 125 GRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 44567777888876653 7899999999999999999876
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=87.10 E-value=6.3 Score=35.46 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=71.5
Q ss_pred HHHHHHcCCcceEEe-cCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCC
Q 020299 157 MEECQNLGYTKAIGV-SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSN 233 (328)
Q Consensus 157 L~~l~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~ 233 (328)
|.+-.++|+. .+|+ .......+.+++...+++++++=.+..++..+ ..++..|+..|+..+.+-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444555775 4553 34445566777778889999999999988776 6788889999999888887643
Q ss_pred cccChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCC
Q 020299 234 RVMECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNW 286 (328)
Q Consensus 234 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 286 (328)
...++.+|..| .+++|-..|.+++++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12345566666 5677777888888877776655
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=84.56 E-value=17 Score=33.01 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCCc
Q 020299 157 MEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSNR 234 (328)
Q Consensus 157 L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~ 234 (328)
|.+..++|+.-.-.........+.+++..++++++++-.+..++..+ ..++..++..|+..+.+-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 44444567754333344445566677777889999999999988776 5788888889998888777532
Q ss_pred ccChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCC
Q 020299 235 VMECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNW 286 (328)
Q Consensus 235 ~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 286 (328)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12456777777 5777888888888888888766
No 22
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=83.49 E-value=43 Score=32.06 Aligned_cols=154 Identities=22% Similarity=0.260 Sum_probs=91.8
Q ss_pred eeeCCcCCCCChhHHHHHHHHHHHcCCCeE-eCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc----------CC
Q 020299 28 GLGTAASPFSGSETTKLAILEAMKLGYRHF-DTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL----------WC 96 (328)
Q Consensus 28 glG~~~~~~~~~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~----------~~ 96 (328)
.+||.... .+.+.-.+-++.|++.|-..+ |-+. .|.-..+-+.+-+ ...+-|-|=- ..
T Consensus 66 NIGtS~~~-~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~---------~s~vpvGTVPiYqa~~~~~~~~ 134 (423)
T TIGR00190 66 NIGTSADT-SDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILD---------AVPVPVGTVPIYQAAEKVHGAV 134 (423)
T ss_pred eecCCCCC-CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCCh
Confidence 34444322 444555566789999997744 5443 3333333333221 1111111110 12
Q ss_pred CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCCh
Q 020299 97 SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSC 176 (328)
Q Consensus 97 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~ 176 (328)
.+.+++.+.+.+++..+ |-+|.+-+|.- -..+.++.++++| |..|+-+-..
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G-----------------------i~~~~~~~~~~~~--R~~giVSRGG 185 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG-----------------------VLLEYVERLKRSG--RITGIVSRGG 185 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc-----------------------hhHHHHHHHHhCC--CccCeecCcH
Confidence 35667777777776654 55788999964 2457888999988 5677777776
Q ss_pred hHHHHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCCC
Q 020299 177 KKLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIW 230 (328)
Q Consensus 177 ~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l~ 230 (328)
.-+..++...+ .=||++.+ +++++.|++++|.+----.|.- |.+.
T Consensus 186 s~~~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i~ 231 (423)
T TIGR00190 186 AILAAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLSLGDGLRP-GCIA 231 (423)
T ss_pred HHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Cccc
Confidence 66666655443 23566555 7899999999999865555543 5443
No 23
>PRK08392 hypothetical protein; Provisional
Probab=82.88 E-value=31 Score=29.94 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEE--eccCCCCCChhhHHHHHHHHHHHhCC
Q 020299 42 TKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIA--SKLWCSDAHRELVVPALQKSLENLQL 117 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~DTA~~Yg--sE~~lG~al~~~~~~~~~~~R~~~~I~--tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (328)
..+.++.|.+.|++.|=.+++.. ...-+...+++..+-. .+.++.|. .=+.... +. ....++.++ ..
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~~---~~-~~~~~~~~~--~~ 86 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANITP---NG-VDITDDFAK--KL 86 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeecC---Cc-chhHHHHHh--hC
Confidence 57899999999999997666653 1112222222211101 12233222 2221111 11 223334444 35
Q ss_pred CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC--------hhHHHHHHHhC---
Q 020299 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS--------CKKLGDILATA--- 186 (328)
Q Consensus 118 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~--------~~~l~~~~~~~--- 186 (328)
||+ +.-+|..... .......+.+.++.+.|.+.-+|=-... .+.++++++.+
T Consensus 87 D~v-I~SvH~~~~~----------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~ 149 (215)
T PRK08392 87 DYV-IASVHEWFGR----------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAY 149 (215)
T ss_pred CEE-EEEeecCcCC----------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHh
Confidence 666 6677843111 1245677888888889988877743211 12333333333
Q ss_pred CCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHH
Q 020299 187 KIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (328)
Q Consensus 187 ~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~ 255 (328)
+....+|- ..-.+...+++.|++.|+.++.-| =+. . +..+-..+...+++++.|.++.++
T Consensus 150 g~~lEiNt---~~~~p~~~~l~~~~~~G~~~~igS-DAH-~----~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 150 GKAFEISS---RYRVPDLEFIRECIKRGIKLTFAS-DAH-R----PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CCEEEEeC---CCCCCCHHHHHHHHHcCCEEEEeC-CCC-C----hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 22222331 122345789999999998765433 221 1 011112356677888888777654
No 24
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=82.44 E-value=32 Score=32.72 Aligned_cols=128 Identities=10% Similarity=0.045 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHH-----------HHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-e
Q 020299 101 RELVVPALQKSL-----------ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-A 168 (328)
Q Consensus 101 ~~~i~~~l~~sL-----------~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~ 168 (328)
++.+++.++... +.+| +|++.||.-.....+. +...++..++.++..+.=.+- -
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~-----------d~~~~e~a~~vk~V~~av~vPLI 192 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLD-----------DKSPSEAAKVLEDVLQAVDVPIV 192 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCcccc-----------ccCHHHHHHHHHHHHHhCCCCEE
Confidence 355666666644 4455 6888888653221100 123556667777664433322 3
Q ss_pred EEec---CCChhHHHHHHHhCCC-CCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHH
Q 020299 169 IGVS---NFSCKKLGDILATAKI-PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEI 244 (328)
Q Consensus 169 iGvS---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~l 244 (328)
|+=| ..+++.++++++.+.- +|.++-..... .-..+.+.|+++|..+++++|..- |. ...+...
T Consensus 193 L~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di-n~---------ak~Ln~k 260 (389)
T TIGR00381 193 IGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI-NM---------QKTLNRY 260 (389)
T ss_pred EeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH-HH---------HHHHHHH
Confidence 3333 5678999999998864 56665433321 236899999999999999998864 32 2344444
Q ss_pred HHHhCCCHHH
Q 020299 245 AEAKGKTVAQ 254 (328)
Q Consensus 245 a~~~~~s~~q 254 (328)
..++|+.+.+
T Consensus 261 L~~~Gv~~eD 270 (389)
T TIGR00381 261 LLKRGLMPRD 270 (389)
T ss_pred HHHcCCCHHH
Confidence 4566665444
No 25
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=81.61 E-value=20 Score=32.02 Aligned_cols=97 Identities=13% Similarity=0.003 Sum_probs=67.1
Q ss_pred HHcCCcceEEe-cCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccC
Q 020299 161 QNLGYTKAIGV-SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME 237 (328)
Q Consensus 161 ~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 237 (328)
.++|+. .+|+ ++.....+.+++..++++++++=.+..++..+ ..++..++..|+..+.+-|-..
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------ 73 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------ 73 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC------------
Confidence 344664 3443 44445566677777889999998999988776 6788888889998888877643
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCC
Q 020299 238 CEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNW 286 (328)
Q Consensus 238 ~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 286 (328)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 74 ----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11345566666 4667777777777777766554
No 26
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=81.43 E-value=15 Score=35.56 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=43.1
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEee-cCCCCCCCCCCCCCccCCCCC-ccHHHHHHH-HHHHHHcCCcceEEec
Q 020299 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLP-MDFKSVWEA-MEECQNLGYTKAIGVS 172 (328)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-L~~l~~~Gkir~iGvS 172 (328)
-+..+.+.+.+.++..++ |+.|+|.+|.+- -|..... .. ....+...+ ....+.++. .+.|.+.|. +++|+|
T Consensus 198 lP~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~-~~--~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeis 272 (416)
T COG0635 198 LPGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFA-QR--KIKGKALPDEDEKADMYELVEELLEKAGY-RQYEIS 272 (416)
T ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhh-hh--cccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeec
Confidence 355677888888877664 789999999884 3322110 00 000000000 012244444 445566676 999999
Q ss_pred CCCh
Q 020299 173 NFSC 176 (328)
Q Consensus 173 ~~~~ 176 (328)
||..
T Consensus 273 nfa~ 276 (416)
T COG0635 273 NFAK 276 (416)
T ss_pred hhcC
Confidence 9987
No 27
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=81.13 E-value=0.61 Score=24.46 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.3
Q ss_pred CCchhhhcccCCC
Q 020299 315 GPIKTIEELWDGE 327 (328)
Q Consensus 315 ~~~~~~~~~~~~~ 327 (328)
-||..+|.||+|.
T Consensus 7 m~~S~lekLW~G~ 19 (20)
T PF07725_consen 7 MPYSKLEKLWEGV 19 (20)
T ss_pred CCCCChHHhcCcc
Confidence 4889999999995
No 28
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=80.56 E-value=9.9 Score=34.67 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=76.4
Q ss_pred HHHHHHHcCCcceEEecCCChhHHHHHHHhCC--C----CCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 156 AMEECQNLGYTKAIGVSNFSCKKLGDILATAK--I----PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 156 ~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
.++.|....++-.+-=++.+.+.+.++.+... + -+..+.+-+.-..|++.+.+++++-++-++.-+.=
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n------ 219 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN------ 219 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC------
Confidence 34555445555566666677776666555432 1 11233333333345678899999888877763322
Q ss_pred CCCCcccChHHHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHhh
Q 020299 230 WGSNRVMECEVLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 230 ~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 281 (328)
.-+-..|.++|+++|. ++.++-..|.-... +.+..|+|+|+.+-+.+
T Consensus 220 -----SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 -----SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -----CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 2356789999999974 78999999998776 78889999998775543
No 29
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.27 E-value=10 Score=36.24 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccC-CCCCChhhHHHHHHHHHHHhC
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLW-CSDAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~-~~~~~~~~i~~~l~~sL~~Lg 116 (328)
++.....++++|++.|++++|||.+......+....+ +..+.+..-++ .+..+--....++++-.. .
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVLAAYAAKELFD--E 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--c
Confidence 3445668999999999999999987755333333333 23344444442 222222222222222222 5
Q ss_pred CCceeEEEeecCCCC
Q 020299 117 LEYIDLYVIHWPVSS 131 (328)
Q Consensus 117 ~d~iDl~~lH~p~~~ 131 (328)
+++||+|..+.|...
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 889999999988665
No 30
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.08 E-value=53 Score=30.24 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChH--HHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQ--PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~--~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~L 115 (328)
++++..+.++.+.+.|++.|+.--.-..+. ..=+++++. -. ++-|.-+... ..+.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-------~g-~~~l~vD~n~-~~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-------AP-DARLRVDANQ-GWTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-------CC-CCeEEEeCCC-CcCHHHH-HHHHHHHHhc
Confidence 567777888888999999998643111121 122334432 12 5667777643 2334333 2233444554
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeec
Q 020299 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQ 194 (328)
Q Consensus 116 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q 194 (328)
++ .++-.|-.. +-++.+.++++...|. ..|=+-++...+..+++....+ ++|
T Consensus 204 ~l-----~~iEeP~~~--------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~v~ 256 (316)
T cd03319 204 GV-----ELIEQPVPA--------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--GIN 256 (316)
T ss_pred CC-----CEEECCCCC--------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--EEE
Confidence 44 444444211 1245677788777676 4455667888898888876544 666
Q ss_pred cccCccc---ccHHHHHHHHHcCCeEEEeccCC
Q 020299 195 VEMNPLW---QQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 195 ~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
......- .-.++..+|+++|+.++..+-+.
T Consensus 257 ~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 257 IKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 6655432 22688999999999999876554
No 31
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=78.04 E-value=14 Score=34.10 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCcceEEecCCChhHHHHHHHhCCCC-Ce-----eeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccC
Q 020299 164 GYTKAIGVSNFSCKKLGDILATAKIP-PA-----ANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME 237 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~~~~~~~~-~~-----~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 237 (328)
.++-.+-=++.+.+.+.++.+...-. +. .+.+-+.-..|++.+.+++++.+.-++.-+.=. -+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sN 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----------SN 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----------cc
Confidence 45666666667777766665544311 11 122222222345788899998888777733322 34
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHhh
Q 020299 238 CEVLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 238 ~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 281 (328)
-..|.++|++++. +..++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 5789999999874 78999999997766 78899999998765544
No 32
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=77.99 E-value=68 Score=30.88 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=66.2
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh
Q 020299 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
+.+++.+...+++..+ +-+|.+-+|.- -..+.++.++++| |..|+-+-...
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcG-----------------------i~~~~~~~~~~~~--R~~giVSRGGs 189 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCG-----------------------VTRETLERLKKSG--RIMGIVSRGGS 189 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc-----------------------hhHHHHHHHHhcC--CccCeecCCHH
Confidence 5667777777776654 56788999964 2347888999887 56777777766
Q ss_pred HHHHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCCC
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIW 230 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l~ 230 (328)
-+..++...+ .=||++.. +++++.|++++|.+----.|.- |.+.
T Consensus 190 ~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i~ 234 (431)
T PRK13352 190 FLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLSLGDGLRP-GCIA 234 (431)
T ss_pred HHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Cccc
Confidence 6666655432 33566665 8999999999999865554543 5443
No 33
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=77.11 E-value=53 Score=29.51 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhH
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~ 178 (328)
.+++.+.+.+++.+ .-|.++||+= .....|+.... +. ....+.+...++.+++.-.+ -+.+-+++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG----~~st~p~~~~i--~~----~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~v 87 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVG----GESTRPGADRV--SP----EEELNRVVPVIKALRDQPDV-PISVDTYRAEV 87 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEC----CCCCCCCCCCC--CH----HHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHH
Confidence 35566666655544 5689999982 11111110000 00 00122355566666665222 48888999999
Q ss_pred HHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEecc
Q 020299 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 222 (328)
++++++.. . ..+|-+..- . .+++++.++++|..++.+.-
T Consensus 88 i~~al~~G-~-~iINsis~~--~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 88 ARAALEAG-A-DIINDVSGG--Q-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHcC-C-CEEEECCCC--C-CchhHHHHHHcCCcEEEEeC
Confidence 99999873 3 345544332 2 56889999999999999653
No 34
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=76.63 E-value=67 Score=30.08 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCC--------hHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQT--------EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~Ygs--------E~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~ 109 (328)
+.++..+.++.+.+.|++.|-.--..+. ....=+++++. -.+++.|....+. ..+.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a~~--- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEAIR--- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHHHH---
Confidence 4677777888888999998864322221 11112344433 2345666666633 234444332
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCC
Q 020299 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKI 188 (328)
Q Consensus 110 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~ 188 (328)
.+++|. ..++.++..|... +.++.+..+++.-.+. ..|=|.+++..+.++++....
T Consensus 208 -~~~~l~--~~~i~~iEqP~~~--------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 208 -LARALE--EYDLFWFEEPVPP--------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred -HHHHhC--ccCCCeEcCCCCc--------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 233332 1245556665321 2346677777775565 445566788999999886644
Q ss_pred CCeeeccccCcc---cccHHHHHHHHHcCCeEEEec
Q 020299 189 PPAANQVEMNPL---WQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 189 ~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~ 221 (328)
+++|+....+ .+-..+.+.|+++|+.++..+
T Consensus 265 --d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 265 --DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred --CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 4666665443 223688999999999987765
No 35
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=76.22 E-value=14 Score=33.74 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCcceEEecCCChhHHHHHHHhCCCCC----eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChH
Q 020299 164 GYTKAIGVSNFSCKKLGDILATAKIPP----AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECE 239 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~~~~~~~~~----~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~ 239 (328)
.++-.+-=++.+.+.+.++.+...-.+ ..+.+-+.-..|++.+.+++++-++-++.-+.- .-+-.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~-----------SsNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKH-----------SSNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC-----------CccHH
Confidence 455555555667777666655443111 122222333345578888898888887773332 23457
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHhh
Q 020299 240 VLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 240 ~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 281 (328)
.|.++|++++. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 78899999998877 78899999998775553
No 36
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=76.21 E-value=29 Score=32.33 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHhCCCceeEEEeec-CCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcce-EEecCC---ChhHHHHHHHhC
Q 020299 112 LENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA-IGVSNF---SCKKLGDILATA 186 (328)
Q Consensus 112 L~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvS~~---~~~~l~~~~~~~ 186 (328)
-+.+|.|+||+-+.-. |+.. +...++....++...+.=.+-- |..|.. +++.++++++.+
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~---------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~ 149 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGK---------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAA 149 (319)
T ss_pred HHHhCCCEEEEECCCCCcccc---------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHh
Confidence 3478998888765322 2110 1123444445555444333333 665533 688999999988
Q ss_pred CC-CCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHH
Q 020299 187 KI-PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQ 254 (328)
Q Consensus 187 ~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q 254 (328)
+- +|.++-+... +-+.+.+.|+++|..|++.+|..- ...+.+...+.++|+++.+
T Consensus 150 ~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 150 EGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNILLTELGVPRER 205 (319)
T ss_pred CCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHHHHHcCCCHHH
Confidence 73 3655544321 237899999999999999986632 2345566666677765544
No 37
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.74 E-value=37 Score=30.58 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l 179 (328)
+.+.+.+...+. ..-|.|+||+=.=-.+ ....+.+...++.+++.-.+ -|-+-+++++.+
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~~~~------------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~ 82 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAGTAV------------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAI 82 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCc------------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHH
Confidence 345555554443 3678999998642100 01144455566666554222 488899999999
Q ss_pred HHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEecc
Q 020299 180 GDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 222 (328)
+.+++.+.-.+.+|-+.... .+.+.+++.++++|+.++....
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 99999854455666444321 2346889999999999998654
No 38
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=75.18 E-value=43 Score=33.22 Aligned_cols=127 Identities=9% Similarity=0.053 Sum_probs=75.5
Q ss_pred CCccHHHHHHHHHHHHHcCCcceEEecC----CChhHHHHHHH----hCCCCC-eeeccccCcccccHHHHHHHHHcCCe
Q 020299 146 LPMDFKSVWEAMEECQNLGYTKAIGVSN----FSCKKLGDILA----TAKIPP-AANQVEMNPLWQQNKLREFCKAKDIQ 216 (328)
Q Consensus 146 ~~~~~~~~~~~L~~l~~~Gkir~iGvS~----~~~~~l~~~~~----~~~~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~ 216 (328)
...+.+.+++.++.++++..++.+-++. .+...+.++++ ....+. ...+...+....+.++++..++.|+.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 3456889999999998876688887663 23444433333 211221 12344444444567899999999987
Q ss_pred EEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCC----cEEeeCC--CCHHHHHHhhcc
Q 020299 217 LAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQG----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 217 v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~----~~vi~g~--~~~~~l~enl~a 283 (328)
-+..+.=.. ..+.++.+.+.+......-+++.+.+.| ...|+|. .+.+.+++.++-
T Consensus 300 ~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 300 HISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred EEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 766544432 2344555544333233334677777776 3456774 567777777653
No 39
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=75.04 E-value=7.8 Score=35.36 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCcceEEecCCChhHHHHHHHhCC--CCCe----eeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccC
Q 020299 164 GYTKAIGVSNFSCKKLGDILATAK--IPPA----ANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME 237 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~~~~~~--~~~~----~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 237 (328)
+++-.+-=++++.+.+.++.+... ++-. .+.+-+.-..|+..+.+++++-++-++.-+.- .-+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~-----------SsN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKN-----------SSN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCC-----------Ccc
Confidence 477777777888777666655543 2111 12222222234577888888878777663322 235
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHhh
Q 020299 238 CEVLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 238 ~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 281 (328)
-..|.++|++++. ++.++-..|+-... +.+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 6889999999985 78999999999887 88899999998876654
No 40
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=73.47 E-value=22 Score=31.70 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHH-----------------HHHHHHHhcCCCCCCCcEEEEeccCCCCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLG-----------------DAIAEALSTGIIKSRDELFIASKLWCSDA 99 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG-----------------~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 99 (328)
.+.++..++.+++-+.||.+|=|...-.+-.++- ..|+..-+ ....++|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK-----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH-----hCCcEEEECCC----C
Confidence 6788899999999999999996654322111110 01222111 24457777753 3
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l 179 (328)
+-+.|.++++...++- .-++.++|....+.. ..++ --++.+..|++.=- --||+|.|+....
T Consensus 124 tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~-------~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 124 TLEEIERAVEVLREAG---NEDLVLLHCVSSYPT-------PPED-------VNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp -HHHHHHHHHHHHHHC---T--EEEEEE-SSSS---------GGG---------TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCC-------ChHH-------cChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 3477777777653333 468999998755432 1111 22355555655422 5789999997654
Q ss_pred HHHHH
Q 020299 180 GDILA 184 (328)
Q Consensus 180 ~~~~~ 184 (328)
..+..
T Consensus 186 ~~~~A 190 (241)
T PF03102_consen 186 APIAA 190 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 41
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=72.21 E-value=49 Score=32.68 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCeEe--CCCCCC----------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH----
Q 020299 43 KLAILEAMKLGYRHFD--TATLYQ----------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP---- 106 (328)
Q Consensus 43 ~~~l~~A~~~Gin~~D--TA~~Yg----------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~---- 106 (328)
.+-.+...+.|+..+- ||-.|- .-+.+..+-++.+... -+.++||++-++.... .+-++
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgG--AQplA~~m~ 179 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGG--AQPLAATMA 179 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCC--HHHHHHHHT
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEeccccccc--chHHHHHhc
Confidence 3456677788887663 555552 4555667777766544 4888999999865422 11111
Q ss_pred ---------HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh
Q 020299 107 ---------ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 107 ---------~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
.-++.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-.+
T Consensus 180 g~v~l~vEvd~~ri~kR~~~g~ld~~~-----------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad 236 (546)
T PF01175_consen 180 GGVGLIVEVDPSRIEKRLEQGYLDEVT-----------------------DDLDEALARAKEARAKKEPLSIGLLGNAAD 236 (546)
T ss_dssp T-EEEEEES-HHHHHHHHHTTSSSEEE-----------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHH
T ss_pred CceEEEEEECHHHHHHHHhCCCeeEEc-----------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHH
Confidence 113344677789999763 138899999999999999999999988899
Q ss_pred HHHHHHHhCC-CCCeeeccccC
Q 020299 178 KLGDILATAK-IPPAANQVEMN 198 (328)
Q Consensus 178 ~l~~~~~~~~-~~~~~~q~~~~ 198 (328)
.++++++..- .+...-|.+.|
T Consensus 237 ~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 237 LWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHHHHTT---SEE---SSTT
T ss_pred HHHHHHHcCCCCCcccCCCccc
Confidence 9999988743 33455677664
No 42
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=72.09 E-value=21 Score=32.57 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=77.2
Q ss_pred HHHHHHHHH--HcCCcceEEecCCChhHHHHHHHhCC--C----CCeeeccccCcccccHHHHHHHHHcCCeEEEeccCC
Q 020299 153 VWEAMEECQ--NLGYTKAIGVSNFSCKKLGDILATAK--I----PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 153 ~~~~L~~l~--~~Gkir~iGvS~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
..+.++.+. ..-++-++-=++.+.+...+.++..+ + .|..+-+-|--.+|+..+.+.+.+-++-++.-++-.
T Consensus 145 ~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nS 224 (294)
T COG0761 145 SVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNS 224 (294)
T ss_pred cHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCC
Confidence 334444443 22244444444555555555544432 2 122333334444566788888888888888755554
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHhh
Q 020299 225 ARGTIWGSNRVMECEVLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 225 ~~G~l~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 281 (328)
+ +..+|.++|++.|. ++.++=..|+-... +.+-.|+|+|+.|-+++
T Consensus 225 S-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 225 S-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred c-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 3 56889999999986 67888889998866 77889999999887775
No 43
>PRK08609 hypothetical protein; Provisional
Probab=71.99 E-value=1.2e+02 Score=30.79 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC--------ChHHHHHHH---HHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020299 42 TKLAILEAMKLGYRHFDTATLYQ--------TEQPLGDAI---AEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~DTA~~Yg--------sE~~lG~al---~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~ 110 (328)
..++++.|.+.|+.+|=.++++. +...+-..+ ++. .... ..=++++-.=+.. .++....-.+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~--~~i~Il~GiEv~i---~~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKY--PEIDILSGIEMDI---LPDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhc--CCCeEEEEEEEee---cCCcchhhcHH
Confidence 56799999999999998887752 222222222 221 1111 1112332222211 11222222333
Q ss_pred HHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecC------CC--hhHHHHH
Q 020299 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN------FS--CKKLGDI 182 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~------~~--~~~l~~~ 182 (328)
.|+. .||+ +.-+|++-. .+.+++++.+.++.+.|.+.-||=-. .. ...++++
T Consensus 425 ~L~~--~D~v-I~SvH~~~~-----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFS-----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHHh--hCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 4544 5666 777786521 12567788899999889888777544 11 2334444
Q ss_pred HHhCCCCCeeeccccCcccc--cHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHH
Q 020299 183 LATAKIPPAANQVEMNPLWQ--QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQ 254 (328)
Q Consensus 183 ~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q 254 (328)
++.+.-.-.++|++-+++.. ...++..|++.|+.++. ++=+. . ...+-..+.-..+|++-+.++.+
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH-~----~~~l~~~~~~v~~ar~~~~~~~~ 552 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAH-H----TEMLDDMKYGVATARKGWIQKDR 552 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCC-C----hhhhCcHHHHHHHHHHcCCCHHH
Confidence 44422112366666665432 37889999999987543 32222 1 12233345666777777766655
No 44
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.60 E-value=75 Score=28.41 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=68.0
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEe-ecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVI-HWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
.+.+.+.+..++.+ .-|.|+||+=.- -+|... +.+.+ ...+.+...++.+++.-.+ -|.+-+++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-------~~~~~----~E~~rl~~~v~~l~~~~~~-piSIDT~~~~ 87 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAE-------PVSVE----EELERVIPVLRALAGEPDV-PISVDTFNAE 87 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-------cCCHH----HHHHHHHHHHHHHHhcCCC-eEEEeCCcHH
Confidence 45566666655544 568999998632 122210 00110 1234556667777665333 3899999999
Q ss_pred HHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCC
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
.++++++.+ .+.+|-+ +....+.++++.++++|..++.+..-+
T Consensus 88 v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 88 VAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 999999987 4455533 333223789999999999999876543
No 45
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=71.32 E-value=61 Score=28.92 Aligned_cols=99 Identities=13% Similarity=0.043 Sum_probs=64.4
Q ss_pred HHHHcCCcceEEe-cCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcc
Q 020299 159 ECQNLGYTKAIGV-SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSNRV 235 (328)
Q Consensus 159 ~l~~~Gkir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~ 235 (328)
+..++|+. .+|+ .......+.+.+...++++.++=++.+++..+ ..++..++..|..++.+-|-..
T Consensus 5 ~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~---------- 73 (249)
T TIGR02311 5 QALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD---------- 73 (249)
T ss_pred HHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC----------
Confidence 34445775 3443 23333344444555778888888888886544 4567777777887777755432
Q ss_pred cChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCCCHHHHHHhhcccCC
Q 020299 236 MECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSFNKERMKENLDIFNW 286 (328)
Q Consensus 236 ~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 286 (328)
+ .-++.++..| .+++|-..|++++++.+++..+
T Consensus 74 ----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456777777 5778888888888888887664
No 46
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.95 E-value=83 Score=28.19 Aligned_cols=105 Identities=9% Similarity=-0.049 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhH
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~ 178 (328)
.+++.+.+..++.++ -|.|+||+=. .|... ...++.-+.+..+++.-. .-|.+-+++++.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~----------------~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v 82 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGL----------------DGVSAMKWLLNLLATEPT-VPLMLDSTNWEV 82 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCC----------------CHHHHHHHHHHHHHHhcC-CcEEeeCCcHHH
Confidence 455777777777665 5999999754 12110 012233333333332212 248888999999
Q ss_pred HHHHHHhCCCCCeeeccccCcc-cccHHHHHHHHHcCCeEEEeccC
Q 020299 179 LGDILATAKIPPAANQVEMNPL-WQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~-~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
++++++.+.-...+|-+....+ .+...+++.++++|..++.+..-
T Consensus 83 ~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 83 IEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 9999997532345664443221 12467889999999999988654
No 47
>PLN02489 homocysteine S-methyltransferase
Probab=69.67 E-value=99 Score=28.98 Aligned_cols=170 Identities=11% Similarity=0.074 Sum_probs=93.2
Q ss_pred CcEEEEeccCCCC----------------CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCcc
Q 020299 86 DELFIASKLWCSD----------------AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD 149 (328)
Q Consensus 86 ~~~~I~tK~~~~~----------------~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 149 (328)
.+++|+.-+++.. .+.+.+.......++.|--..+|++.+-... +
T Consensus 131 ~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~-------------------~ 191 (335)
T PLN02489 131 RPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP-------------------N 191 (335)
T ss_pred CCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC-------------------C
Confidence 4578888775421 3447777777777777744669999997542 3
Q ss_pred HHHHHHHHHHHHHcC--CcceEEecCCC------hhHHHHHHHhCC--CCCeeeccccCcccccHHHHHHHHHc-CCeEE
Q 020299 150 FKSVWEAMEECQNLG--YTKAIGVSNFS------CKKLGDILATAK--IPPAANQVEMNPLWQQNKLREFCKAK-DIQLA 218 (328)
Q Consensus 150 ~~~~~~~L~~l~~~G--kir~iGvS~~~------~~~l~~~~~~~~--~~~~~~q~~~~~~~~~~~l~~~~~~~-gi~v~ 218 (328)
..++..+++.+++.+ +--.+.++..+ ...+.++++... ..+..+-+++.....-..+++..+.. .+.++
T Consensus 192 l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~ 271 (335)
T PLN02489 192 KLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIV 271 (335)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEE
Confidence 667777777777665 44455555322 112333332221 24556777775322224555555544 56666
Q ss_pred EeccCCCCCCCCCCCcccChHHHHHHHHHhCCC---HHHHHHHHHhhCCcEEeeCC--CCHHHHHHhhcccC
Q 020299 219 AYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT---VAQVCLRWAYEQGVCVVVKS--FNKERMKENLDIFN 285 (328)
Q Consensus 219 a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s---~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 285 (328)
+|-- + |..+.... . .. ...++.+ .++.+.+|.- .++.+|=|+ ++|+||++--+.++
T Consensus 272 vyPN-a--G~~~~~~~---~-~~---~~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 272 VYPN-S--GETYDGEA---K-EW---VESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred EECC-C--CCCCCCcc---C-cc---cCCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 6542 2 33211100 0 00 0012222 4566788864 477666665 78999988766543
No 48
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.92 E-value=99 Score=27.97 Aligned_cols=84 Identities=20% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHh----------CCCHHHHH--------HHHHhhC--
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAK----------GKTVAQVC--------LRWAYEQ-- 263 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~----------~~s~~q~a--------l~~~l~~-- 263 (328)
.++.+.|+++||..+-.-+-.. ..++++++++.- |+|-++.. ++.+.++
T Consensus 137 ~~~~~~~~~~gi~~I~lvaPtt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~ 205 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVAPTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD 205 (265)
T ss_pred HHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcC
Confidence 5677777777777665443322 346666666653 44433322 3333332
Q ss_pred -CcEEeeCCCCHHHHHHhhcccCC-cCCHHHHHHhhc
Q 020299 264 -GVCVVVKSFNKERMKENLDIFNW-ELTDEETKKISD 298 (328)
Q Consensus 264 -~~~vi~g~~~~~~l~enl~a~~~-~L~~~~~~~l~~ 298 (328)
|+++=.|.++++|+++..++.+- -.=.+-++.|.+
T Consensus 206 ~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 206 VPVLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred CCeEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHh
Confidence 36666888999999998887653 333334444433
No 49
>PRK07094 biotin synthase; Provisional
Probab=66.44 E-value=70 Score=29.51 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHHHHHcCCcceEEecC-----CChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEecc
Q 020299 148 MDFKSVWEAMEECQNLGYTKAIGVSN-----FSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 148 ~~~~~~~~~L~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 222 (328)
++.+++.+.++.+++.| ++.+.++. +..+.+.++++..+-.+. +.+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35888999999998876 56666542 234556666554432111 123344444457888899999987766433
Q ss_pred CCCCCCCCCCCcccChHHHHHHHHHhCCCHHHH--HHHHHhhCC----cEEeeCC--CCHHHHHHhhcc
Q 020299 223 LGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV--CLRWAYEQG----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 223 l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~--al~~~l~~~----~~vi~g~--~~~~~l~enl~a 283 (328)
=.. ..+.+..+.+ +.+..+. +++++...| ...++|. .+.+++.+.+..
T Consensus 148 Es~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 ETA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred ccC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 221 2334444433 3344443 577777666 4567774 577887776654
No 50
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=65.54 E-value=1.3e+02 Score=28.82 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC-------ChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~ 94 (328)
.+..++.+.+..|++.| ....|+ +.+.+.+.+-+.+...+ ..+++|+++-+
T Consensus 78 ~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 35677888999999988 345776 34555555544333333 68899998764
No 51
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=65.35 E-value=1e+02 Score=27.51 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChHH--HHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQP--LGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~--lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~L 115 (328)
++++..+.++.+.+.|++.|-.--.-..+.- .=+++++. -.+++.|.-..+. ..+.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHHH-HHHHhc
Confidence 4466667777788889988864322111221 22344433 1334555555432 23344333332 233444
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeec
Q 020299 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQ 194 (328)
Q Consensus 116 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q 194 (328)
+ +.++..|-.. +-++.+.++++.-.+. ..|=+-++...+.++++...+ +++|
T Consensus 156 ~-----i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~v~ 208 (265)
T cd03315 156 G-----LDYVEQPLPA--------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DAVN 208 (265)
T ss_pred C-----CCEEECCCCc--------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CEEE
Confidence 4 4445555321 1235566677665555 445556677888888776544 3666
Q ss_pred cccCcccc---cHHHHHHHHHcCCeEEEeccCCC
Q 020299 195 VEMNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 195 ~~~~~~~~---~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+.....-- -.++.+.|+.+|+.++..+.+..
T Consensus 209 ~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 209 IKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 66544322 26788889999999988766543
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.56 E-value=92 Score=28.07 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC--
Q 020299 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS-- 175 (328)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~-- 175 (328)
.++.+ -+..+-+.|.++|+++|++-+.........+.. .....+.++.+....+ +..+..+++...
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 83 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKS----------AFCDDEFLRRLLGDSK-GNTKIAVMVDYGND 83 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccCCCc----------cCCCHHHHHHHHhhhc-cCCEEEEEECCCCC
Confidence 44444 445566669999999999887543321110000 0112455666555543 346666666544
Q ss_pred -hhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEe
Q 020299 176 -CKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (328)
Q Consensus 176 -~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 220 (328)
.+.+..+.+ +.++..-+.+..+.+..-.+.+++++++|+.|...
T Consensus 84 ~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 84 DIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 344444433 33443223333333333367889999999876643
No 53
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=64.20 E-value=1.1e+02 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=32.3
Q ss_pred CeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCC
Q 020299 190 PAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (328)
Q Consensus 190 ~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~ 250 (328)
|.+.+.-||+.++. +.+++.|++.||- |++...-+......+.+.|++||+
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd----------GlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVD----------GLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCC----------EEEeCCCChHHHHHHHHHHHHcCC
Confidence 66777778876654 6677778777662 333333333445667777778775
No 54
>PRK13796 GTPase YqeH; Provisional
Probab=63.98 E-value=1.3e+02 Score=28.41 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=75.0
Q ss_pred CChhHHHHHHHHHHHcC---CCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC--CCCChhhHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLG---YRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWC--SDAHRELVVPALQKS 111 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~G---in~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~--~~~~~~~i~~~l~~s 111 (328)
.+.++..++++..-+.- +-.+|..+.-++- -..|.+.. + .+.-++|.+|.-- .....+.+.+.++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C---CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 45566667766665544 4457766644431 11233221 1 3566889999832 222345566666666
Q ss_pred HHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHH-HHHH
Q 020299 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL-GDIL 183 (328)
Q Consensus 112 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l-~~~~ 183 (328)
.+.+|....+++.+..-.. ....++++.+.++.+.+.+-.+|.+|..-..| ..++
T Consensus 126 ~k~~g~~~~~v~~vSAk~g-----------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG-----------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred HHhcCCCcCcEEEEECCCC-----------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHH
Confidence 6777765557776654321 23778888888887778899999999996654 4444
No 55
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=63.62 E-value=5.1 Score=37.68 Aligned_cols=53 Identities=11% Similarity=0.239 Sum_probs=34.7
Q ss_pred cCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccc--ccHHHHHHHHHcCCe
Q 020299 163 LGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW--QQNKLREFCKAKDIQ 216 (328)
Q Consensus 163 ~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~ 216 (328)
-|+||++||--++.+.+.++.....- -++.+....++. .+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 49999999999999999888665431 223322222222 236777777777765
No 56
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.26 E-value=1.5e+02 Score=28.56 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=61.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCC
Q 020299 61 TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFP 139 (328)
Q Consensus 61 ~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~ 139 (328)
-.||.+..|-++|++..+.. +.+-++|.|-.-.. .--+.+..-+++.-++.. -..+.++.+|.|..... .
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~-liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~--~--- 131 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTE-TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS--H--- 131 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc---CCCEEEEECCcchh-hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc--H---
Confidence 36678888889998875432 33446666664221 112334333333222211 01356777877754321 0
Q ss_pred CccCCCCCccHHHHHHHHHH-H------HHcCCcceEEecCC---ChhHHHHHHHhCCCCCee
Q 020299 140 IKKEDFLPMDFKSVWEAMEE-C------QNLGYTKAIGVSNF---SCKKLGDILATAKIPPAA 192 (328)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~-l------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~~~~ 192 (328)
....+.++++|-+ + ++.++|--||-++. +.+.+.++++..++++..
T Consensus 132 -------~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 132 -------ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 0112333333332 1 23467888876654 357788888888876443
No 57
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=62.12 E-value=1.2e+02 Score=27.23 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEe-ecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVI-HWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
.+.+.+.+..++.+ +-|.|+||+=.- -+|..... +. ....+.+...++.+++.-.+. +.+-+++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i-------~~----~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~ 87 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPV-------SV----EEELERVIPVLEALRGELDVL-ISVDTFRAE 87 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCC-------CH----HHHHHHHHHHHHHHHhcCCCc-EEEeCCCHH
Confidence 34455555544443 458899998532 12321100 00 011333444556666653443 889999999
Q ss_pred HHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEecc
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 222 (328)
.++++++.+ ...+|-+ +....+..+++.++++|..++++..
T Consensus 88 v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 88 VARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 999999875 3345533 3333237899999999999999654
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=62.08 E-value=57 Score=28.88 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CcceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~ 177 (328)
.+.+...+-+ +.|.++|+++|++-..-.+... | ...+.++.++.+++.+ .++...++.-...
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~-p---------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAV-P---------------QMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCcccc-c---------------cCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 3445554444 4477899999888765433211 1 1235677888888888 6777677765566
Q ss_pred HHHHHHHhCCCCCeeeccccCcc----------------cccHHHHHHHHHcCCeEEEec
Q 020299 178 KLGDILATAKIPPAANQVEMNPL----------------WQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~l~~~~~~~gi~v~a~~ 221 (328)
.++.+.+.. . ..+++.+..- ..-.+.++++++.|+.+...-
T Consensus 79 ~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677776643 3 3444444332 111467888999998876544
No 59
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=61.57 E-value=1.1e+02 Score=26.78 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 020299 40 ETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEY 119 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~ 119 (328)
....+++..|.+.|+..|=.+++...........+.. . ++-|-+-+-.....++.+.. .+++.. ..
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~--~i~Il~GiEi~~~~~~~~~~----~~~~~~-~~ 81 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------L--GFEIFRGVEIVASNPSKLRG----LVGKFR-KK 81 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------c--CCcEEeeEEEecCCHHHHHH----HHHhcc-Cc
Confidence 4578999999999999886666643111001111111 1 12222222111122333333 333322 35
Q ss_pred eeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-------ChhHHHHHHHhCCCCCee
Q 020299 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-------SCKKLGDILATAKIPPAA 192 (328)
Q Consensus 120 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-------~~~~l~~~~~~~~~~~~~ 192 (328)
+|++.+| |. .+.+ ...+.+.+.|.-||--.. ....+..+.+ .+ .+
T Consensus 82 ~d~v~v~-~~--------------------~~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~-~g---v~ 133 (237)
T PRK00912 82 VDVLAVH-GG--------------------DEKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAAR-NN---VA 133 (237)
T ss_pred ccEEEEe-CC--------------------CHHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHH-CC---eE
Confidence 7888888 21 1122 235777888888886542 1122222222 22 24
Q ss_pred eccccCcccc------------cHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHH
Q 020299 193 NQVEMNPLWQ------------QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (328)
Q Consensus 193 ~q~~~~~~~~------------~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~ 255 (328)
+.++++++.. ...++..|++.|+.++.-|=-.. ...+-.......+++..|.+..++
T Consensus 134 lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 134 IEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred EEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHH
Confidence 4455554321 14789999999988875442211 112234567778888888766554
No 60
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=60.81 E-value=1.2e+02 Score=26.93 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCcceEEecCC-ChhHHHHHHHhCCCCCeee-ccccCcccccHHHHHHHHHcCCeE
Q 020299 154 WEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAAN-QVEMNPLWQQNKLREFCKAKDIQL 217 (328)
Q Consensus 154 ~~~L~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~~~-q~~~~~~~~~~~l~~~~~~~gi~v 217 (328)
++.+.++++.-.+.-|..... +++.+.++++..+++-+++ ..-|..-..-.++.+.|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 344555555555666666543 4778888887665543222 111212122367888888888764
No 61
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=60.72 E-value=1.7e+02 Score=28.62 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=60.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC----ceeEEEeecCCCCCC
Q 020299 59 TATLYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLE----YIDLYVIHWPVSSKP 133 (328)
Q Consensus 59 TA~~YgsE~~lG~al~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d----~iDl~~lH~p~~~~~ 133 (328)
..-.||.|+-|-++|++..+.. +. +=++|.|-+-.. .--+.+..-+++.=++++-+ .+.++.+|.|+....
T Consensus 64 ~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~e-iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 64 DSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTE-IIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS 139 (454)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHh-hhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC
Confidence 3347888888889998764322 22 336677765321 11234444444332222111 367888888765321
Q ss_pred CCCCCCCccCCCCCccHHHHHHHHHHHHH--------cCCcceEEecC--CChhHHHHHHHhCCCCCe
Q 020299 134 GSYEFPIKKEDFLPMDFKSVWEAMEECQN--------LGYTKAIGVSN--FSCKKLGDILATAKIPPA 191 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--------~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~ 191 (328)
.......+++.+.+ +++|--||-.+ .+.+.+.++++..++++.
T Consensus 140 ---------------~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 140 ---------------MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 12222233333322 46688887432 234677888888776643
No 62
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=60.67 E-value=37 Score=34.90 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=73.3
Q ss_pred HHHHHcCCcceEEecCCChhHHHHHHHhCC--CC--CeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCC
Q 020299 158 EECQNLGYTKAIGVSNFSCKKLGDILATAK--IP--PAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSN 233 (328)
Q Consensus 158 ~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~--~~--~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~ 233 (328)
+.+....++-.+-=++.+.+.+..+.+... ++ ...+.+-+.-..|+..+.+++++.++-++.-+.=
T Consensus 148 ~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~---------- 217 (647)
T PRK00087 148 EKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKN---------- 217 (647)
T ss_pred hhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCC----------
Confidence 333334555566666677776666655433 11 1123333333345678889998888877773333
Q ss_pred cccChHHHHHHHHHhCC------CHHHHHHHHHhhCC-cEEeeCCCCHHHHHHh
Q 020299 234 RVMECEVLKEIAEAKGK------TVAQVCLRWAYEQG-VCVVVKSFNKERMKEN 280 (328)
Q Consensus 234 ~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~en 280 (328)
.-+...|.++|++.|. ++.++.-.|.-... +.+..|+|+|+.+-+.
T Consensus 218 -SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 218 -SSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred -CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 2355789999999874 78999999988776 7888999999865444
No 63
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.98 E-value=1.6e+02 Score=27.63 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA 60 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA 60 (328)
.+.++..++++..-++||.+|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888999999999999999984
No 64
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=58.37 E-value=1.7e+02 Score=27.65 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (328)
+.++..+.+..+.+.|++.|=.-- .+.+ +++++. -.+++.|..-.+ ...+.+...+ -++.|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~v-~avre~-------~G~~~~l~vDaN-~~w~~~~A~~----~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKLF-EAVREK-------FGFEFHLLHDVH-HRLTPNQAAR----FGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHHH-HHHHhc-------cCCCceEEEECC-CCCCHHHHHH----HHHHhh-
Confidence 445666777777889999874311 1222 334432 134555555543 2344443322 223343
Q ss_pred CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeeccc
Q 020299 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVE 196 (328)
Q Consensus 118 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~ 196 (328)
.+++.++-.|-.. +-++.+.+|++...+. ..|=|.++...+..+++...+ +++|+.
T Consensus 188 -~~~l~~iEeP~~~--------------------~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~--di~~~d 244 (361)
T cd03322 188 -PYRLFWMEDPTPA--------------------ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI--DYIRTT 244 (361)
T ss_pred -hcCCCEEECCCCc--------------------ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC--CEEecC
Confidence 2467777776421 2356788888887776 777888889999999886543 477776
Q ss_pred cCcc---cccHHHHHHHHHcCCeEEEeccC
Q 020299 197 MNPL---WQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 197 ~~~~---~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
...+ .+-.++.+.|+++|+.++.++..
T Consensus 245 ~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 245 VSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 6543 22368999999999999876544
No 65
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.01 E-value=1.7e+02 Score=27.65 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHH
Q 020299 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (328)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~ 181 (328)
..-+-.+-+.|.++|+++|++-..-.|... |. ..+.+++++++. +...++..++. .+...++.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~v-Pq------------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWV-PQ------------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccc-cc------------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 344556667799999999998744343211 10 012344555554 33335555554 57888988
Q ss_pred HHHhCCCCCeeeccccCcccc--------c------HHHHHHHHHcCCeEEEe
Q 020299 182 ILATAKIPPAANQVEMNPLWQ--------Q------NKLREFCKAKDIQLAAY 220 (328)
Q Consensus 182 ~~~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~v~a~ 220 (328)
+++.. .+...+-++.+..+. + .+++++++++|+.+.++
T Consensus 130 A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 130 AIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred HHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 88753 332222223322211 1 36889999999988533
No 66
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=56.50 E-value=50 Score=28.75 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHH--HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG--~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~ 113 (328)
.++++...+.+.+.+.|..|+=|+..|+ .-..++ +.+++. -+++ +-.|....-.+.++..+-++.--.
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhhH
Confidence 4567788999999999999999999886 212222 233333 1222 344543333367889999999999
Q ss_pred HhCCCc
Q 020299 114 NLQLEY 119 (328)
Q Consensus 114 ~Lg~d~ 119 (328)
|+|++.
T Consensus 200 riGts~ 205 (211)
T TIGR00126 200 RIGASA 205 (211)
T ss_pred HhCcch
Confidence 999875
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.15 E-value=84 Score=28.72 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHH
Q 020299 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDIL 183 (328)
Q Consensus 104 i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~ 183 (328)
-+..+-+.|.++|+++|++-.++.|..... ..+.++.+..+.+...++...+. .+...++.++
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~----------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVPQ----------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccccc----------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 344555668899999999874444421110 11234555555544446655554 4777788887
Q ss_pred HhCCCCCeeeccccCcccc--------------cHHHHHHHHHcCCeEEE
Q 020299 184 ATAKIPPAANQVEMNPLWQ--------------QNKLREFCKAKDIQLAA 219 (328)
Q Consensus 184 ~~~~~~~~~~q~~~~~~~~--------------~~~l~~~~~~~gi~v~a 219 (328)
+.. .+...+-++.|..+. -.+.+++++++|+.+.+
T Consensus 90 ~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 90 AAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 753 332222233332211 14688999999998863
No 68
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=56.04 E-value=83 Score=28.35 Aligned_cols=85 Identities=20% Similarity=0.089 Sum_probs=57.4
Q ss_pred cceeeCCcCCCCChh-HHHHHHHHHHHcCCCeEeCCCCCC----Ch---HHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 020299 26 VLGLGTAASPFSGSE-TTKLAILEAMKLGYRHFDTATLYQ----TE---QPLGDAIAEALSTGIIKSRDELFIASKLWCS 97 (328)
Q Consensus 26 ~lglG~~~~~~~~~~-~~~~~l~~A~~~Gin~~DTA~~Yg----sE---~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~ 97 (328)
++.+=+.. .+++ +..++.+.|.++|..|+=|+..|+ +. +++-+.+++. +. .++ +--|....
T Consensus 135 KVIlEt~~---L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~~---~~~--vgIKAsGG 203 (257)
T PRK05283 135 KVIIETGE---LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---GV---AKT--VGFKPAGG 203 (257)
T ss_pred EEEEeccc---cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---cc---CCC--eeEEccCC
Confidence 44555544 3556 488899999999999999999996 22 3333333322 11 122 44565444
Q ss_pred CCChhhHHHHHHHHHHHhCCCcee
Q 020299 98 DAHRELVVPALQKSLENLQLEYID 121 (328)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~iD 121 (328)
=.+.+...+-++.--+.||.++++
T Consensus 204 Irt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 204 VRTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CCCHHHHHHHHHHHHHHhChhhcC
Confidence 456788999999999999998877
No 69
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=55.69 E-value=1e+02 Score=28.16 Aligned_cols=151 Identities=14% Similarity=0.248 Sum_probs=90.2
Q ss_pred ccccceeeCCcCCCCChhHHHHHHHHHHHc-CCCeEeCCCCCC-----C-hHHHHHHH---HHHHhcCCCCCCCcEEEEe
Q 020299 23 RMPVLGLGTAASPFSGSETTKLAILEAMKL-GYRHFDTATLYQ-----T-EQPLGDAI---AEALSTGIIKSRDELFIAS 92 (328)
Q Consensus 23 ~vs~lglG~~~~~~~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg-----s-E~~lG~al---~~~~~~~~~~~R~~~~I~t 92 (328)
+|-+.+++-..+.+.+.+.+.+-|+..++. +..++|.-..-- + ...+-++| ++...+|.+ | ||
T Consensus 103 KvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~--R---fi-- 175 (342)
T KOG1576|consen 103 KVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKI--R---FI-- 175 (342)
T ss_pred eeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCce--e---Ee--
Confidence 466666665555556778888888888854 889998643222 2 23344444 444334531 1 11
Q ss_pred ccCCCCCChhhHHHHHHHHHHHhCCCceeEEE--eecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEE
Q 020299 93 KLWCSDAHRELVVPALQKSLENLQLEYIDLYV--IHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (328)
Q Consensus 93 K~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 170 (328)
+...+.-+-+...+ +-+..++|.++ .|.- ......++.|+.++.+ .+|
T Consensus 176 --Gitgypldvl~~~a-----e~~~G~~dvvlsY~ry~-------------------l~d~tLl~~~~~~~sk----~vg 225 (342)
T KOG1576|consen 176 --GITGYPLDVLTECA-----ERGKGRLDVVLSYCRYT-------------------LNDNTLLRYLKRLKSK----GVG 225 (342)
T ss_pred --eecccchHHHHHHH-----hcCCCceeeehhhhhhc-------------------cccHHHHHHHHHHHhc----Cce
Confidence 22233334454444 45677899887 5532 1244677888888865 578
Q ss_pred ecCCChhHHHHHHHhCCCCCeeeccccCccccc-----HHHHHHHHHcCCeE
Q 020299 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-----NKLREFCKAKDIQL 217 (328)
Q Consensus 171 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-----~~l~~~~~~~gi~v 217 (328)
|.|-++-.+-.+-+.. .+ +++|..++ ....++|+++||.+
T Consensus 226 Vi~AsalsmgLLt~~g-p~------~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 226 VINASALSMGLLTNQG-PP------PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred EEehhhHHHHHhhcCC-CC------CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 9888776665554433 22 45666554 46788999998865
No 70
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.59 E-value=47 Score=32.67 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCCeEe--CCCCC----------CChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-hhhHH-----
Q 020299 44 LAILEAMKLGYRHFD--TATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAH-RELVV----- 105 (328)
Q Consensus 44 ~~l~~A~~~Gin~~D--TA~~Y----------gsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~-~~~i~----- 105 (328)
+-++...+.|+..+- ||-.| |.-+.+..+-++.+... -+.++||++-++..... |..+.
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCce
Confidence 345566677777552 44444 14566667777765433 37889999988653210 00000
Q ss_pred -----HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHH
Q 020299 106 -----PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (328)
Q Consensus 106 -----~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~ 180 (328)
-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++
T Consensus 184 ~i~vEvd~~ri~kR~~~gyld~~~-----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 240 (545)
T TIGR01228 184 SIAVEVDESRIDKRLETKYCDEQT-----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLP 240 (545)
T ss_pred EEEEEECHHHHHHHHhcCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHH
Confidence 0112334688889999662 238899999999999999999999998899999
Q ss_pred HHHHhCC-CCCeeeccccC
Q 020299 181 DILATAK-IPPAANQVEMN 198 (328)
Q Consensus 181 ~~~~~~~-~~~~~~q~~~~ 198 (328)
++++..- .+...-|.+.|
T Consensus 241 ~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 241 ELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHcCCCCCCcCCCCccc
Confidence 9988642 33455677654
No 71
>PRK05414 urocanate hydratase; Provisional
Probab=54.41 E-value=48 Score=32.74 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCCeEe--CCCCC----------CChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-hhhHH-----
Q 020299 44 LAILEAMKLGYRHFD--TATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAH-RELVV----- 105 (328)
Q Consensus 44 ~~l~~A~~~Gin~~D--TA~~Y----------gsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~-~~~i~----- 105 (328)
+-++..-+.|+..+- ||-.| |.-+.+..+-++.+. |- -+.++||++-++..... |..+.
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v 192 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAV 192 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCce
Confidence 345556667776552 44444 245666677777654 32 37889999988653210 00000
Q ss_pred -----HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHH
Q 020299 106 -----PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (328)
Q Consensus 106 -----~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~ 180 (328)
-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++
T Consensus 193 ~i~vEvd~~ri~kR~~~gyld~~~-----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 249 (556)
T PRK05414 193 CLAVEVDESRIDKRLRTGYLDEKA-----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLP 249 (556)
T ss_pred EEEEEECHHHHHHHHhCCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHH
Confidence 0112344688889999762 238899999999999999999999988899999
Q ss_pred HHHHhCC-CCCeeeccccC
Q 020299 181 DILATAK-IPPAANQVEMN 198 (328)
Q Consensus 181 ~~~~~~~-~~~~~~q~~~~ 198 (328)
++++..- .+...-|.+.|
T Consensus 250 ~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 250 ELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHcCCCCCccCcCcccc
Confidence 9988642 33455676654
No 72
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=53.99 E-value=1.8e+02 Score=26.81 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~L 115 (328)
.+.++..++++.+.+.|++.|.-+..-. -..-+-+.++.....+ .-.++.|+|-... +.+. -+.|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~l-------l~~~-~~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGYL-------LARR-AAALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCchh-------HHHH-HHHHHHc
Confidence 6678889999999999998886432111 1112334444331111 1235777776411 2222 2345555
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC----cceEEecCCChhHHHHHHHhCC-CCC
Q 020299 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY----TKAIGVSNFSCKKLGDILATAK-IPP 190 (328)
Q Consensus 116 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvS~~~~~~l~~~~~~~~-~~~ 190 (328)
|++.+- +-||..+...- . .... ...++.++++++.+++.|. |..+.+...+.+++.++++.+. ...
T Consensus 118 gl~~i~-ISlds~~~e~~---~-~i~~----~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERF---K-AITG----RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred CCCEEE-EEeccCCHHHh---c-cCCC----CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 665543 33444332110 0 0000 1247899999999999885 2244444555566666555542 222
Q ss_pred eeeccccCcccc-----------cHHHHHHHHHcCCeEE
Q 020299 191 AANQVEMNPLWQ-----------QNKLREFCKAKDIQLA 218 (328)
Q Consensus 191 ~~~q~~~~~~~~-----------~~~l~~~~~~~gi~v~ 218 (328)
.+.-++|.+... ..++++..+++|+.+.
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 233334443221 1456677777655443
No 73
>PLN02591 tryptophan synthase
Probab=53.45 E-value=1.6e+02 Score=26.35 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=31.3
Q ss_pred CeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCC
Q 020299 190 PAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (328)
Q Consensus 190 ~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~ 250 (328)
|.+.+..||+..+. +.+++.|++.|+. |++...-+......+.+.++++|+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~----------GviipDLP~ee~~~~~~~~~~~gl 132 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGVH----------GLVVPDLPLEETEALRAEAAKNGI 132 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCCC----------EEEeCCCCHHHHHHHHHHHHHcCC
Confidence 45678888887663 6778888887762 222222223345667777777774
No 74
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=53.12 E-value=2.4e+02 Score=28.02 Aligned_cols=109 Identities=11% Similarity=0.075 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCc
Q 020299 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (328)
Q Consensus 62 ~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 141 (328)
.+|+++.|-++|++..+.. +.+-++|+|-+ .++-+-..++...++++.+.++++.++.|.....
T Consensus 66 v~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~-------- 129 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF---KPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK-------- 129 (511)
T ss_pred ecchHHHHHHHHHHHHHhc---CCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccc--------
Confidence 4678888888888764332 23345555543 2344444455555556655688999988754321
Q ss_pred cCCCCCccHHHHHHHHHH-H----------HHcCCcceEEecCC------ChhHHHHHHHhCCCCC
Q 020299 142 KEDFLPMDFKSVWEAMEE-C----------QNLGYTKAIGVSNF------SCKKLGDILATAKIPP 190 (328)
Q Consensus 142 ~~~~~~~~~~~~~~~L~~-l----------~~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~ 190 (328)
. ......+++++-+ + .+.++|.-||.++. +...+.++++..++.+
T Consensus 130 --~--~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 130 --E--NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred --h--hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 0 0012222222221 1 13456888998763 3567888888877654
No 75
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=51.27 E-value=2.4e+02 Score=27.48 Aligned_cols=125 Identities=9% Similarity=0.048 Sum_probs=65.8
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccC---CCCCccHHHHHHHHHHHHH-----cCCcceEEe
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKE---DFLPMDFKSVWEAMEECQN-----LGYTKAIGV 171 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~l~~-----~Gkir~iGv 171 (328)
.++.+.....+.++.-..+.--.++||-|-.......+...+.. +......+.+.+.++...+ .+.|+.|=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~ 120 (449)
T PRK09058 41 PAEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYF 120 (449)
T ss_pred ChHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEE
Confidence 34666666666664322233347999988655443333221110 0001123334445554443 245665533
Q ss_pred -----cCCChhHHHHHHHhCC----CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCC
Q 020299 172 -----SNFSCKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 172 -----S~~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
|..+++++.++++..+ +.. .-+-++.||-.-..+.++.+++.|+.-+..+.-.
T Consensus 121 GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQS 183 (449)
T PRK09058 121 GGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQS 183 (449)
T ss_pred CCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCc
Confidence 2234677777776543 111 1223445554445789999999999888766553
No 76
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=50.61 E-value=1.6e+02 Score=29.01 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCC
Q 020299 67 QPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL 146 (328)
Q Consensus 67 ~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 146 (328)
+-+|.+|+ .+.+++|+-.+...|.....+..-+.+.+++-++.. --+-|.--.. .
T Consensus 342 ~dlG~~L~---------~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER---------------~ 396 (524)
T COG4943 342 RDLGDLLR---------QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRP-QQIALELTER---------------T 396 (524)
T ss_pred HHhHHHHH---------hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcCh-HHheeehhhh---------------h
Confidence 44677777 467789998887777777778888888888777532 1111111000 0
Q ss_pred CccHHHHHHHHHHHHHcCCcceE---EecCCChhHHHHH-HHhCCCCCeeec-cccCcccc--cHHHHHHHHHcCCeEEE
Q 020299 147 PMDFKSVWEAMEECQNLGYTKAI---GVSNFSCKKLGDI-LATAKIPPAANQ-VEMNPLWQ--QNKLREFCKAKDIQLAA 219 (328)
Q Consensus 147 ~~~~~~~~~~L~~l~~~Gkir~i---GvS~~~~~~l~~~-~~~~~~~~~~~q-~~~~~~~~--~~~l~~~~~~~gi~v~a 219 (328)
.++......-+.++++.|.--+| |..--+..-|..+ ++..+++-.+++ +.++.... -..+++.+++.|+.++|
T Consensus 397 f~D~~~~~~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 397 FADPKKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred hcCchhhhHHHHHHHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 23456677788999999975444 2221111222221 111222211221 12222111 15788999999999888
Q ss_pred ec
Q 020299 220 YA 221 (328)
Q Consensus 220 ~~ 221 (328)
=+
T Consensus 477 EG 478 (524)
T COG4943 477 EG 478 (524)
T ss_pred ec
Confidence 43
No 77
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=50.37 E-value=1.6e+02 Score=30.44 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 020299 40 ETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEY 119 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~ 119 (328)
+-+.++++.|-+.|++.+ ..|.-+.. +.. .+. +-++-|+..|..++- ..--++++..+--...-
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYseqD~-~sM-HRq-------KADEaY~iGk~l~PV----~AYL~ideii~iak~~~ 106 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSEQDR-LSM-HRQ-------KADEAYLIGKGLPPV----GAYLAIDEIISIAKKHN 106 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEeccch-hhh-hhh-------ccccceecccCCCch----hhhhhHHHHHHHHHHcC
Confidence 568899999999999977 47753322 222 222 568889999975442 23333444444333344
Q ss_pred eeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHh---------CCCCC
Q 020299 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT---------AKIPP 190 (328)
Q Consensus 120 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~---------~~~~~ 190 (328)
+|.+ | |...- +.+--+.-+...+.| |++||=| ++.++.+-+. ++++
T Consensus 107 vdav--H-PGYGF-----------------LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVp- 161 (1176)
T KOG0369|consen 107 VDAV--H-PGYGF-----------------LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVP- 161 (1176)
T ss_pred CCee--c-CCccc-----------------cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCC-
Confidence 5543 4 21100 111112233444555 8999987 5555433211 2222
Q ss_pred eeeccccCcccccHHHHHHHHHcCCeEEEeccCCC
Q 020299 191 AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 191 ~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
++----.|...-++.++||+++|..|+--..+++
T Consensus 162 -vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 162 -VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred -ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 2222223334447899999999999999999987
No 78
>PRK06361 hypothetical protein; Provisional
Probab=48.36 E-value=1.7e+02 Score=24.94 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCC--Ch-HHH---HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHH
Q 020299 41 TTKLAILEAMKLGYRHFDTATLYQ--TE-QPL---GDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLEN 114 (328)
Q Consensus 41 ~~~~~l~~A~~~Gin~~DTA~~Yg--sE-~~l---G~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~ 114 (328)
...++++.|.+.|+..|=.+++.. +. ..+ -+..++. +.. .+=+++...=+.. ..++.+ ..+...+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~ 83 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTH--VPPKLI-PKLAKKARD 83 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcc--cCchhh-chHHHHHHH
Confidence 367899999999999997776654 11 111 1111111 000 1112233322221 112233 333345555
Q ss_pred hCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeec
Q 020299 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQ 194 (328)
Q Consensus 115 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q 194 (328)
++ +|+..+|......+ ... ..-..+.+.|.+.-+|=-..-...+.+++...++-+-++-
T Consensus 84 ~~---~~~~svH~~~~~~~--------------~~~----~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~ 142 (212)
T PRK06361 84 LG---AEIVVVHGETIVEP--------------VEE----GTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA 142 (212)
T ss_pred CC---CEEEEECCCCcchh--------------hhh----hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC
Confidence 55 46668994321111 000 0114566788777666433211222233333332222221
Q ss_pred cccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHH
Q 020299 195 VEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRW 259 (328)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 259 (328)
..+.......+++.+++.|+.++.-|.... +.++...+.+..++++.|.+..++---+
T Consensus 143 -~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 143 -RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred -CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 111112236899999999999887666543 1223345677778888888777764433
No 79
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.68 E-value=84 Score=27.20 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEec-CCChhHHHHHHHhCCCCCe
Q 020299 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPPA 191 (328)
Q Consensus 113 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~ 191 (328)
..+|.||+-+.+.....+. .+.+ ..+.+.... .+.++.+||. |-+++.+.++.+..+ ++
T Consensus 18 ~~~GaD~iGfIf~~~SpR~----------------V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~--~d 77 (207)
T PRK13958 18 SQLPIDAIGFIHYEKSKRH----------------QTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS--IN 77 (207)
T ss_pred HHcCCCEEEEecCCCCccc----------------CCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC--CC
Confidence 4599999998743321111 1132 333333333 2568899996 777888888887664 56
Q ss_pred eecccc
Q 020299 192 ANQVEM 197 (328)
Q Consensus 192 ~~q~~~ 197 (328)
++|++-
T Consensus 78 ~vQLHG 83 (207)
T PRK13958 78 TIQLHG 83 (207)
T ss_pred EEEECC
Confidence 889875
No 80
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=47.58 E-value=2.5e+02 Score=26.48 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=51.2
Q ss_pred EEEeecCCCCCCCCCCCCCcc--C-CCCCccHHHHHHHHHHHHHcCCcceEEecC-----CChhHHHHHHHh---CCCCC
Q 020299 122 LYVIHWPVSSKPGSYEFPIKK--E-DFLPMDFKSVWEAMEECQNLGYTKAIGVSN-----FSCKKLGDILAT---AKIPP 190 (328)
Q Consensus 122 l~~lH~p~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~---~~~~~ 190 (328)
-+++|-|--......+..... . +......+.+.+.++.+.....++.|=+.. .+++.++.+.+. ....+
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~ 84 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKE 84 (374)
T ss_pred EEEEEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCC
Confidence 478898865444444332111 1 110011444555554443334466664432 245566555433 22221
Q ss_pred -eeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 191 -AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 191 -~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
.-+-++.||-.-..+.++..++.|+.-+..+.-
T Consensus 85 ~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvq 118 (374)
T PRK05799 85 DLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQ 118 (374)
T ss_pred CCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECc
Confidence 123344555444578999999999876665543
No 81
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=47.48 E-value=23 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHH
Q 020299 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (328)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~ 181 (328)
+.+-..-+.-.+.||....|+..+..-.+. -..+.+.+.|...++.. | ...+...|..
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~----------------~l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~ 67 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPH----------------NVQSQIVEALVKWRQRF-----G-KKATVQSLIQ 67 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHhc-----C-CCCcHHHHHH
Confidence 344455677778899999888888642211 12568888999998862 2 3566888999
Q ss_pred HHHhCCCCCeeecc
Q 020299 182 ILATAKIPPAANQV 195 (328)
Q Consensus 182 ~~~~~~~~~~~~q~ 195 (328)
++..++++|.+.|+
T Consensus 68 aL~~~~~~~~~~~~ 81 (83)
T cd08319 68 SLKAVEVDPSVLQF 81 (83)
T ss_pred HHHHcCCCHHHHHh
Confidence 99988888776554
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=46.84 E-value=2.9e+02 Score=27.00 Aligned_cols=123 Identities=10% Similarity=0.017 Sum_probs=62.6
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCc----cHHHHHHHHHHHHHc----CCcceE
Q 020299 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPM----DFKSVWEAMEECQNL----GYTKAI 169 (328)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~l~~~----Gkir~i 169 (328)
..+.+...+.+. ....+..--+++|-|-.......+........... .++.+.+.++...+. ..|..|
T Consensus 32 ~~~~~~~~~~~~----~~~~~~~~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i 107 (453)
T PRK13347 32 AFGEDTYREWLR----QIGPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQL 107 (453)
T ss_pred CCCHHHHHHHHH----hccCCCceEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 344455555552 22333344799998865544333322111100001 123444445443332 245555
Q ss_pred EecC-----CChhHHHHHHHhCC----CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCC
Q 020299 170 GVSN-----FSCKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 170 GvS~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
-+.. .+++++.++++... +.. .-+-++.||-.-..+.++.+++.|+.-+..+.-.
T Consensus 108 ~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS 172 (453)
T PRK13347 108 HWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQD 172 (453)
T ss_pred EEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 4432 34677777766542 111 1233455554446899999999998877766553
No 83
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=46.71 E-value=2.4e+02 Score=26.06 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=67.3
Q ss_pred HHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcce-EEecCCC---hhHHHHHHHhC
Q 020299 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA-IGVSNFS---CKKLGDILATA 186 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvS~~~---~~~l~~~~~~~ 186 (328)
..++.| .|++-+|-.... | ...+....++.+.||++.+.=++-. ||-|... +..++++.+.+
T Consensus 159 ~Vk~fg---admvTiHlIsTd-P----------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEva 224 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTD-P----------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVA 224 (403)
T ss_pred HHHHhC---CceEEEEeecCC-c----------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhh
Confidence 334677 577788864321 1 1123458899999999999877764 5777654 67788888777
Q ss_pred CCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCC
Q 020299 187 KIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 187 ~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
.-. .+.-.+.|+-..-+.+.+.+.++|-.|++|+++--
T Consensus 225 EGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 225 EGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 533 12223334333337899999999999999999864
No 84
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=45.49 E-value=88 Score=27.04 Aligned_cols=70 Identities=3% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
.+.+...++.+++..-=--+.+-+++++.++.+++. +.++..+...+.. ..++++.++++|..++++..-
T Consensus 56 ~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 344555555555411112677889999999999998 6665444333322 678999999999999998766
No 85
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.46 E-value=1.5e+02 Score=26.59 Aligned_cols=108 Identities=10% Similarity=-0.012 Sum_probs=56.1
Q ss_pred CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCcceEEec---C
Q 020299 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGVS---N 173 (328)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvS---~ 173 (328)
.++.+.. .++-+.|.++|+++|++-+......... .+. .....-++.++.+++. +..+...++ .
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~---~~~--------~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~ 85 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSL---NYG--------FAAHTDEEYLEAAAEALKQAKLGVLLLPGI 85 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCccc---ccC--------CCCCChHHHHHHHHHhccCCEEEEEecCCc
Confidence 3444444 4555568999999999987632211000 000 0011234455555433 346666654 2
Q ss_pred CChhHHHHHHHhCCCCCeeecccc--CcccccHHHHHHHHHcCCeEEEe
Q 020299 174 FSCKKLGDILATAKIPPAANQVEM--NPLWQQNKLREFCKAKDIQLAAY 220 (328)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~--~~~~~~~~l~~~~~~~gi~v~a~ 220 (328)
.....++.+.+. +++ .+.+.+ |....-.+.+++++++|..+...
T Consensus 86 ~~~~~i~~a~~~-g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 86 GTVDDLKMAADL-GVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCHHHHHHHHHc-CCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 235566666653 333 333322 22222367888999999876553
No 86
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=45.43 E-value=1.3e+02 Score=24.27 Aligned_cols=87 Identities=16% Similarity=0.034 Sum_probs=46.3
Q ss_pred CCcceEEecCCChhH----HHHHHHhCCCCCeeeccccCccccc----------HHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 164 GYTKAIGVSNFSCKK----LGDILATAKIPPAANQVEMNPLWQQ----------NKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 164 Gkir~iGvS~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
-.+...|++..+... +...+...+.+.+++++--|-..+. ..+++.+++++..++-.++... ...
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~-~~~ 115 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAP-PNY 115 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC-Ccc
Confidence 356777888777544 3334443334445666665543221 5788889888888887654321 111
Q ss_pred CCCCcccChHHHHHHHHHhCCC
Q 020299 230 WGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 230 ~~~~~~~~~~~l~~la~~~~~s 251 (328)
.......-.+.++++|+++++.
T Consensus 116 ~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 116 GPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred chHHHHHHHHHHHHHHHHcCCc
Confidence 0000111235566666666543
No 87
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=45.33 E-value=2e+02 Score=24.76 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC----------CCCC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCh
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg-----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (328)
.++++..+..+.+.++|+..||-- +.|| ..+.+-+.++.. ...+ .+-|+.|+.......
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~-----~~~v~vk~r~~~~~~ 137 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAV-----PIPVTVKIRLGWDDE 137 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhc-----CCCEEEEEeeccCCc
Confidence 356778888888889999998742 4566 344455555543 1111 145666763221111
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-ChhHHH
Q 020299 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (328)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l~ 180 (328)
+...+. -+.|+..|+ |.+.+|....... . .....|+.+..+++.-.+.-++..+. +.+.+.
T Consensus 138 ~~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~--~------------~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 138 EETLEL-AKALEDAGA---SALTVHGRTREQR--Y------------SGPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred hHHHHH-HHHHHHhCC---CEEEECCCCHHHc--C------------CCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 123222 234556675 4556675421110 0 00112455666777666777776665 577777
Q ss_pred HHHHhCCCC
Q 020299 181 DILATAKIP 189 (328)
Q Consensus 181 ~~~~~~~~~ 189 (328)
++++..+.+
T Consensus 200 ~~l~~~gad 208 (231)
T cd02801 200 RCLEQTGVD 208 (231)
T ss_pred HHHHhcCCC
Confidence 777764433
No 88
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=45.24 E-value=1.4e+02 Score=25.98 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHHc-----CCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC---------------
Q 020299 37 SGSETTKLAILEAMKL-----GYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWC--------------- 96 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~-----Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~--------------- 96 (328)
.++++....++.+++. |+|--=-+....++..+...++.. + .|.-+||=|+..+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~~~gvp~ 144 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAKELGVPA 144 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHHHCT--E
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHHHcCCCE
Confidence 5678888888888866 443221111112566677666655 1 4556777455421
Q ss_pred --------CCCChhhHHHHHHHHHHHhCCCceeEEEee
Q 020299 97 --------SDAHRELVVPALQKSLENLQLEYIDLYVIH 126 (328)
Q Consensus 97 --------~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH 126 (328)
...+.+.|++++++..+.-+..-.=+..-|
T Consensus 145 ~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 145 ARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp EE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 235678999999998888776666666666
No 89
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=44.93 E-value=2.6e+02 Score=25.89 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (328)
++++..+.+....+.|++.|=.--.-..+...=+++++. - .++-|.--.. ...+++..+ . +++|.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-------~-~~~~l~vDaN-~~~~~~~a~-~----~~~l~- 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-------F-PQIPLVIDAN-ESYDLQDFP-R----LKELD- 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-------C-CCCcEEEECC-CCCCHHHHH-H----HHHHh-
Confidence 456677777888899999873211001222233455543 1 2333433332 223444431 1 33443
Q ss_pred CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeeccc
Q 020299 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVE 196 (328)
Q Consensus 118 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~ 196 (328)
..++.++-.|-. .+-++.+.++++.-.+. ..|=|.++...+..+++...+ +++|..
T Consensus 197 -~~~~~~iEeP~~--------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d 253 (324)
T TIGR01928 197 -RYQLLYIEEPFK--------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIK 253 (324)
T ss_pred -hCCCcEEECCCC--------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeC
Confidence 236667776632 23457788888876665 667888889999988876644 366666
Q ss_pred cCccc---ccHHHHHHHHHcCCeEEEeccCCC
Q 020299 197 MNPLW---QQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 197 ~~~~~---~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
...+- .-.++...|+.+|+.++..+.+..
T Consensus 254 ~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 254 PGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred cchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 55432 236889999999999998765543
No 90
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=44.74 E-value=40 Score=30.57 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred CChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCC
Q 020299 174 FSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
|+...+.++.+..+++..++-..||+... ++.++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 44566777788888888777777866544 899999999999999999854
No 91
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.45 E-value=32 Score=23.60 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 020299 240 VLKEIAEAKGKTVAQVCLRWAYE 262 (328)
Q Consensus 240 ~l~~la~~~~~s~~q~al~~~l~ 262 (328)
.+.+||+++|.++.+++..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 92
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=44.23 E-value=2.6e+02 Score=26.18 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCeEeCCC---------CCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020299 43 KLAILEAMKLGYRHFDTAT---------LYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (328)
Q Consensus 43 ~~~l~~A~~~Gin~~DTA~---------~Yg---sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~ 110 (328)
.+.++...++|+|.+-..- .-| +-+.+-++++...+.|+ +.+-+-.=++-+..+.+.+++.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~----~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF----ENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CEEEEEeecCCCCCCHHHHHHHHHH
Confidence 3566666677888873221 112 22333345554422232 1122222224456778888888876
Q ss_pred HHHHhCCCceeEEEeec-CCCCCCCCCCCCCccCCCCCccHHHHH-HHHHHHHHcCCcceEEecCCCh
Q 020299 111 SLENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVW-EAMEECQNLGYTKAIGVSNFSC 176 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~Gkir~iGvS~~~~ 176 (328)
.+ +|+.+++.++.+.- |.. + ..... .. ..+.++.+ .+.+.|.+.|- .++++|||..
T Consensus 174 ~~-~l~~~~is~y~L~~~~gT--~---l~~~~-~~--~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 174 AK-ELPINHLSAYSLTIEENT--P---FFEKN-HK--KKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred HH-hcCCCEEEeccceecCCC--h---hHHhh-hc--CCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 54 59999999988753 211 0 00000 00 01122333 45666777785 6799999875
No 93
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=43.96 E-value=44 Score=26.14 Aligned_cols=40 Identities=8% Similarity=-0.115 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEA 76 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~al~~~ 76 (328)
.+.+.-..+|...++.|.+.-+.|.-|| +...|.+|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5667777888999999999999999999 999999999987
No 94
>PRK07534 methionine synthase I; Validated
Probab=43.44 E-value=2.8e+02 Score=25.96 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=113.4
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCCChHH-------------HHHHHH---HHHhcCCCCCCCcEEEEeccCCCC---
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQP-------------LGDAIA---EALSTGIIKSRDELFIASKLWCSD--- 98 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~-------------lG~al~---~~~~~~~~~~R~~~~I~tK~~~~~--- 98 (328)
.++...++=+..+++|-+.+=|.....+-.. .-.+++ +.. .. .+.+++|+.-+++..
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~-~~---~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVA-DK---AGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hh---cCCccEEEEecCCCcccc
Confidence 3444555545567999999986653223111 111222 110 01 123578888886531
Q ss_pred -----CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecC
Q 020299 99 -----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN 173 (328)
Q Consensus 99 -----~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~ 173 (328)
.+.+.+.......++.|--.-+|++++-... +..++..+++.+++.|+=-.+.++.
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p-------------------~l~E~~a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETIS-------------------APEEIRAAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC-------------------CHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 2456677777777777744569999997542 3677777788787777655555553
Q ss_pred CC---------hhHHHHHHHhCCCCCeeeccccCc-ccc-cHHHHHHHHHc-CCeEEEeccCCCCCCCCCCCcccChHHH
Q 020299 174 FS---------CKKLGDILATAKIPPAANQVEMNP-LWQ-QNKLREFCKAK-DIQLAAYAPLGARGTIWGSNRVMECEVL 241 (328)
Q Consensus 174 ~~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~l~~~~~~~-gi~v~a~~pl~~~G~l~~~~~~~~~~~l 241 (328)
.+ ...+..+++.....++.+.+++.. ... ...++...... .+.+++|--- |.. .......
T Consensus 180 ~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p----~~~~~~~- 251 (336)
T PRK07534 180 DTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIP----KYVDGHI- 251 (336)
T ss_pred CCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCc----ccCCCcc-
Confidence 22 223333333333344677777764 221 13444444333 4566655432 321 0000000
Q ss_pred HHHHHHhCCC---HHHHHHHHHhhCCcEEeeCC--CCHHHHHHhhcccC
Q 020299 242 KEIAEAKGKT---VAQVCLRWAYEQGVCVVVKS--FNKERMKENLDIFN 285 (328)
Q Consensus 242 ~~la~~~~~s---~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 285 (328)
.+..+ .++.+-+| +..|+.+|=|+ ++|+||++--+.++
T Consensus 252 -----~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 -----HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred -----ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 01111 35556677 45577777665 78999888777654
No 95
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=43.39 E-value=1.4e+02 Score=23.26 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=43.7
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC--CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL--EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
+|=-+.|+-|+......+..+++.+.++++.... .-.|++++..+.... .+..++.+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~---------------~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR---------------ATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc---------------CCHHHHHHHHHHHH
Confidence 4656777777655556678899999998876542 346999999875432 34666666666665
Q ss_pred Hc
Q 020299 162 NL 163 (328)
Q Consensus 162 ~~ 163 (328)
+.
T Consensus 109 ~k 110 (120)
T PRK04390 109 AK 110 (120)
T ss_pred HH
Confidence 43
No 96
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=43.30 E-value=2.3e+02 Score=24.83 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCeEeC-CCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC-----C--CChhhHHHHHHHHHHHhCCCceeEE
Q 020299 54 YRHFDT-ATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-----D--AHRELVVPALQKSLENLQLEYIDLY 123 (328)
Q Consensus 54 in~~DT-A~~Yg--sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~-----~--~~~~~i~~~l~~sL~~Lg~d~iDl~ 123 (328)
.|.+.. +..|+ +.+.+.+|.++ ..+++..+.|++.. . ...+.+.+.+-+.++-|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 444443 44787 88888888764 46889999999532 1 124555355555899999 999999
Q ss_pred EeecCCC
Q 020299 124 VIHWPVS 130 (328)
Q Consensus 124 ~lH~p~~ 130 (328)
++--|..
T Consensus 90 L~Q~Pps 96 (230)
T PF01904_consen 90 LFQFPPS 96 (230)
T ss_dssp EEE--TT
T ss_pred EEEcCCC
Confidence 9998753
No 97
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.14 E-value=2e+02 Score=24.16 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCC--CC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEecc-----CCCCCChhhHHHH
Q 020299 40 ETTKLAILEAMKLGYRHFDTATL--YQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKL-----WCSDAHRELVVPA 107 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~~--Yg-----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~-----~~~~~~~~~i~~~ 107 (328)
+.+..++-.++..|-..+=+... |. +++++|++-+++ . .=.-+-++|-. ...|++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR---~---~lpaIaLt~dsS~lTai~NDy~yd~v--- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER---P---SLPAIALSTDSSVLTAIANDYGYDEV--- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcC---C---CCCeeEeecccHHHhhhhccccHHHH---
Confidence 44667778888999887754432 22 466777776643 1 22345666554 3457776664
Q ss_pred HHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHh
Q 020299 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (328)
Q Consensus 108 l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 185 (328)
+.+..+.+|. -=|+++==.+... -..++++++.+|+.| +.-||++.-+...+..+++.
T Consensus 99 FsRqveA~g~-~GDvLigISTSGN------------------S~nVl~Ai~~Ak~~g-m~vI~ltG~~GG~~~~~~D~ 156 (176)
T COG0279 99 FSRQVEALGQ-PGDVLIGISTSGN------------------SKNVLKAIEAAKEKG-MTVIALTGKDGGKLAGLLDV 156 (176)
T ss_pred HHHHHHhcCC-CCCEEEEEeCCCC------------------CHHHHHHHHHHHHcC-CEEEEEecCCCcccccccce
Confidence 3445556774 3477765444322 357899999999997 57899999988888777643
No 98
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.07 E-value=2.5e+02 Score=25.23 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=56.7
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-cceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~ 177 (328)
++.+.. ..+-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+-.++...+.+
T Consensus 19 ~s~~~k-~~i~~~L~~~Gv~~IEvG~---P~~-------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~ 75 (262)
T cd07948 19 FDTEDK-IEIAKALDAFGVDYIELTS---PAA-------------------SPQSRADCEAIAKLGLKAKILTHIRCHMD 75 (262)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEEC---CCC-------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHH
Confidence 344444 4444558999999988873 432 1234455555554443 444566677788
Q ss_pred HHHHHHHhCCCCCeeeccccCcccc---------c-----HHHHHHHHHcCCeEEEec
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQ---------Q-----NKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~---------~-----~~l~~~~~~~gi~v~a~~ 221 (328)
.++.+.+. +++...+-++.|..+. + .+.+.+++++|+.+...-
T Consensus 76 di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 76 DARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 88888874 4442222222222111 1 456788999998766544
No 99
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.23 E-value=2.8e+02 Score=25.65 Aligned_cols=76 Identities=8% Similarity=0.003 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCcceEEecC---------CChhHHHHHHHhCCCCCeeeccccCcc---cc-cHHHHHHHHHcCCe
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSN---------FSCKKLGDILATAKIPPAANQVEMNPL---WQ-QNKLREFCKAKDIQ 216 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~-~~~l~~~~~~~gi~ 216 (328)
...+.+-++.+++-|.++.+.+.+ .+.+.++.+.+. +.. ..+.++.|-. .. ..+.++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS-GKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc-CCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456677778888888777555543 234444444443 322 3333343311 11 14678888899999
Q ss_pred EEEeccCCCCCC
Q 020299 217 LAAYAPLGARGT 228 (328)
Q Consensus 217 v~a~~pl~~~G~ 228 (328)
+...+++.. |.
T Consensus 230 v~~q~vLl~-gv 240 (321)
T TIGR03822 230 MVSQSVLLR-GV 240 (321)
T ss_pred EEEEeeEeC-CC
Confidence 999888875 54
No 100
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.19 E-value=3.8e+02 Score=27.14 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCC-cEEEEeccCCCCCChhhHHHHHHHHHHHhCC
Q 020299 42 TKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD-ELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~-~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (328)
..+.++.-.+.|-.|+|.+..=| ++..+.-+..-. +. .+-.+-.+.+.+.+...+...|+.. ..+|+
T Consensus 17 L~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq--------~~~Gie~i~HLTCrd~n~~~L~~~L~~a-~~~GI 87 (565)
T PLN02540 17 LFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQ--------NMICVETMMHLTCTNMPVEKIDHALETI-KSNGI 87 (565)
T ss_pred HHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHH--------HhcCCCeeEEeeecCCCHHHHHHHHHHH-HHCCC
Confidence 34455555678999999877666 344443332211 11 2223344445566677777777665 78886
Q ss_pred CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-CCcceEEecCCCh------------------hH
Q 020299 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGVSNFSC------------------KK 178 (328)
Q Consensus 118 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvS~~~~------------------~~ 178 (328)
. .++.|..... ..++. +.... ..+..+.+-++.+++. |..-.|||+.+.. ..
T Consensus 88 r--NILALrGDpp-~~~d~-~~~~~-----g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~d 158 (565)
T PLN02540 88 Q--NILALRGDPP-HGQDK-FVQVE-----GGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKD 158 (565)
T ss_pred C--EEEEECCCCC-CCCCC-cCCCC-----CCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHH
Confidence 5 4566654221 11110 00000 1122344445555554 5567888886642 23
Q ss_pred HHHHHHh--CCCCCeeeccccCcccccHHHHHHHHHcC--CeEEE
Q 020299 179 LGDILAT--AKIPPAANQVEMNPLWQQNKLREFCKAKD--IQLAA 219 (328)
Q Consensus 179 l~~~~~~--~~~~~~~~q~~~~~~~~~~~l~~~~~~~g--i~v~a 219 (328)
+..+.+. ++.++.+-|.-|.. ..-...++.|++.| +.|++
T Consensus 159 l~~Lk~KvdAGAdFiITQlfFD~-d~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 159 LAYLKEKVDAGADLIITQLFYDT-DIFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHHHcCCCEEeeccccCH-HHHHHHHHHHHhcCCCCCEEe
Confidence 3433332 34667788877764 11157788899998 44443
No 101
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=41.92 E-value=2.2e+02 Score=24.21 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=24.5
Q ss_pred eeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHH
Q 020299 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (328)
Q Consensus 120 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l 179 (328)
+|.++||..+. . +..+.+.+......++.+|++++....+
T Consensus 74 ~d~Vqlhg~e~-------------------~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES-------------------P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC-------------------H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 68899997531 1 2233343333346788999998765443
No 102
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=41.85 E-value=1.7e+02 Score=25.77 Aligned_cols=87 Identities=8% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCC---------CHHHHHHHHHhhCC-cEEeeCCCC
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK---------TVAQVCLRWAYEQG-VCVVVKSFN 273 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~---------s~~q~al~~~l~~~-~~vi~g~~~ 273 (328)
+++.+..++.||..++++.+.. ......+..+|++.|+ +..++ +.++ ..| .++|+.+..
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 5666667777777776655543 1234567777777653 55555 4654 677 455555543
Q ss_pred HHHHHHhhcccCCcCCHHHHHHhhcCCCCCC
Q 020299 274 KERMKENLDIFNWELTDEETKKISDIPQSRG 304 (328)
Q Consensus 274 ~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 304 (328)
. .|.+. -+...|+++.++.|.++.++..
T Consensus 144 ~-gL~~~--~LGr~id~~~~~~L~~l~~~~g 171 (222)
T TIGR00289 144 M-GLDES--WLGRRIDKECIDDLKRLNEKYG 171 (222)
T ss_pred C-CCChH--HcCCccCHHHHHHHHHHHhhcC
Confidence 2 34433 2455899999988887766543
No 103
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.81 E-value=1.4e+02 Score=28.06 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=82.0
Q ss_pred CCCCCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCC--eEeCCCCCCChHHHHHHHHHHHhcCCCCCCC
Q 020299 9 SISIPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYR--HFDTATLYQTEQPLGDAIAEALSTGIIKSRD 86 (328)
Q Consensus 9 ~~~~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~ 86 (328)
+++|++..++.| ..|-.+|+|+.. .-.++.|-..|.+ .|||++.= . -++++.. | -|
T Consensus 171 YspLk~~g~~pG-~~vgI~GlGGLG---------h~aVq~AKAMG~rV~vis~~~~k-k----eea~~~L---G----Ad 228 (360)
T KOG0023|consen 171 YSPLKRSGLGPG-KWVGIVGLGGLG---------HMAVQYAKAMGMRVTVISTSSKK-K----EEAIKSL---G----AD 228 (360)
T ss_pred eehhHHcCCCCC-cEEEEecCcccc---------hHHHHHHHHhCcEEEEEeCCchh-H----HHHHHhc---C----cc
Confidence 456777788877 899999999833 3456777777766 56665311 2 2455544 3 45
Q ss_pred cEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCc
Q 020299 87 ELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT 166 (328)
Q Consensus 87 ~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki 166 (328)
.+++++|- ++.+ +++..++. .+.+.+--+--| ..-..+.-+|..|++
T Consensus 229 ~fv~~~~d------~d~~-~~~~~~~d-g~~~~v~~~a~~-------------------------~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 229 VFVDSTED------PDIM-KAIMKTTD-GGIDTVSNLAEH-------------------------ALEPLLGLLKVNGTL 275 (360)
T ss_pred eeEEecCC------HHHH-HHHHHhhc-Ccceeeeecccc-------------------------chHHHHHHhhcCCEE
Confidence 55555542 3333 44443332 333333322111 223567788999999
Q ss_pred ceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeE
Q 020299 167 KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQL 217 (328)
Q Consensus 167 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v 217 (328)
-.+|+-.. +-.+.-..-. .-...+..+..-.. +++++||.+++|..
T Consensus 276 V~vg~p~~-~~~~~~~~li----l~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEK-PLKLDTFPLI----LGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCC-cccccchhhh----cccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99999765 2222111111 11222233332221 78999999987754
No 104
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=41.81 E-value=1.4e+02 Score=23.32 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC---CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 160 (328)
+|=-+.|+-|++.....+..+++.+.+.++.+.. ...|++++-.+.... .+..++.+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~---------------~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE---------------CNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 4555667777665556678899999999987642 357999998875432 3577888888777
Q ss_pred HHc
Q 020299 161 QNL 163 (328)
Q Consensus 161 ~~~ 163 (328)
.+.
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 655
No 105
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.80 E-value=3.3e+02 Score=26.61 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=42.8
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCc-cHH---HH-HHHHHHHHHcCCcceE
Q 020299 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPM-DFK---SV-WEAMEECQNLGYTKAI 169 (328)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~~L~~l~~~Gkir~i 169 (328)
+.+..+.+.+++.++..+ +|+.++|++|.+.-.....-. ....+...... +.+ +. -.+.+.|.+.|. +++
T Consensus 223 GlPgqT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~---~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~y 297 (449)
T PRK09058 223 GLPGQTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLA---KAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQL 297 (449)
T ss_pred eCCCCCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHH---HHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEE
Confidence 456677888888887755 499999999988632111000 00000000001 111 22 234566777786 668
Q ss_pred EecCCCh
Q 020299 170 GVSNFSC 176 (328)
Q Consensus 170 GvS~~~~ 176 (328)
++|+|..
T Consensus 298 eis~far 304 (449)
T PRK09058 298 SNSHWAR 304 (449)
T ss_pred eeeeeec
Confidence 9998874
No 106
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=41.60 E-value=3e+02 Score=25.76 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=69.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC---------------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ---------------------TEQPLGDAIAEALSTGIIKSRDELFIASKLW 95 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---------------------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~ 95 (328)
.+.+.-..+.++|-+.|+-+|-|--.+. ...+|-...+ ..+.+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~---------~~kPiIlSTGm- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK---------KGKPIILSTGM- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh---------cCCCEEEEccc-
Confidence 6677788899999999999996544442 1223322222 23457777764
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC
Q 020299 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (328)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~ 175 (328)
.+-+.+.++++... +=|. .|+.+||....+.. ..+ +--+++|..|++.= ---||+|.|+
T Consensus 157 ---a~~~ei~~av~~~r-~~g~--~~i~LLhC~s~YPa-------p~e-------d~NL~~i~~l~~~F-n~~vGlSDHT 215 (347)
T COG2089 157 ---ATIEEIEEAVAILR-ENGN--PDIALLHCTSAYPA-------PFE-------DVNLKAIPKLAEAF-NAIVGLSDHT 215 (347)
T ss_pred ---ccHHHHHHHHHHHH-hcCC--CCeEEEEecCCCCC-------CHH-------HhhHHHHHHHHHHh-CCccccccCc
Confidence 23367777776543 3443 39999998654421 111 11233444444432 4479999999
Q ss_pred hhHHHHHHHh
Q 020299 176 CKKLGDILAT 185 (328)
Q Consensus 176 ~~~l~~~~~~ 185 (328)
...+..+.+.
T Consensus 216 ~g~~a~l~Av 225 (347)
T COG2089 216 LGILAPLAAV 225 (347)
T ss_pred cchhHHHHHH
Confidence 8766555443
No 107
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=41.38 E-value=1.5e+02 Score=24.04 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=45.1
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC--CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
+|=-+.|+-|++. ...+..+++.+.++++.+. ....|++++...... .++.++.+.|..+.
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~----------------~~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ----------------PDFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC----------------CCHHHHHHHHHHHH
Confidence 4667888888765 4567889999999998774 346899999887542 23667777666665
Q ss_pred Hc
Q 020299 162 NL 163 (328)
Q Consensus 162 ~~ 163 (328)
++
T Consensus 109 ~~ 110 (138)
T PRK00730 109 PE 110 (138)
T ss_pred HH
Confidence 54
No 108
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=40.66 E-value=1.7e+02 Score=22.90 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=44.9
Q ss_pred CCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC------ceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHH
Q 020299 85 RDELFIASKLWCSDAHRELVVPALQKSLENLQLE------YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAME 158 (328)
Q Consensus 85 R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 158 (328)
|=-+.|+-|+......+..+++.+.++.+....+ -.|++++-.+... ..+..++-+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~---------------~~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE---------------EINFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc---------------cCCHHHHHHHHH
Confidence 6678888887665566789999999999887642 4789999877543 234666666666
Q ss_pred HHH
Q 020299 159 ECQ 161 (328)
Q Consensus 159 ~l~ 161 (328)
.+.
T Consensus 112 ~l~ 114 (118)
T PRK01492 112 KII 114 (118)
T ss_pred HHH
Confidence 653
No 109
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=40.43 E-value=2e+02 Score=27.24 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred cccceeeCCcCCC---------CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 020299 24 MPVLGLGTAASPF---------SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (328)
Q Consensus 24 vs~lglG~~~~~~---------~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~ 94 (328)
+.+|.+|.-.+.. .+.+++.+.+..+.+.|+..+-.-=.|
T Consensus 114 ~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~------------------------------- 162 (370)
T PRK06294 114 INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIY------------------------------- 162 (370)
T ss_pred CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeec-------------------------------
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCceeEEEeec-----------------CCCCCCCCCCCCCccCCCCCccHHHHHHHH
Q 020299 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHW-----------------PVSSKPGSYEFPIKKEDFLPMDFKSVWEAM 157 (328)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~-----------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 157 (328)
+.+..+.+.+++.++..++ |+.++|.+|.+.- |+.... .+-...+.
T Consensus 163 GlPgqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 225 (370)
T PRK06294 163 GLPTQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEIL----------------AEMSLAAE 225 (370)
T ss_pred CCCCCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHH----------------HHHHHHHH
Q ss_pred HHHHHcCCcceEEecCC
Q 020299 158 EECQNLGYTKAIGVSNF 174 (328)
Q Consensus 158 ~~l~~~Gkir~iGvS~~ 174 (328)
+.|.+.|. .++++|||
T Consensus 226 ~~L~~~Gy-~~yeis~f 241 (370)
T PRK06294 226 ELLTSQGF-TRYELASY 241 (370)
T ss_pred HHHHHcCC-Ceeeeeee
No 110
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=40.06 E-value=3.3e+02 Score=26.08 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 020299 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 151 ~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
...+..+..+.+.+.++.+-+...+.+.++++++. +.+..++..+-||..+- +++.+.|+++|+.++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34555555655555566666665567777776642 33444554455654432 7889999999998887666543
No 111
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=39.84 E-value=3.1e+02 Score=25.37 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEeC----------CCCCC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCh
Q 020299 37 SGSETTKLAILEAMKLGYRHFDT----------ATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DT----------A~~Yg-----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (328)
.++++..+....+.+.|+..||- ...+| .-+.+.+.++...+ . -.+++-|+.|+.....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~---~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A---VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h---cCCCcceEEEEECCCCCc
Confidence 56777787888888999999982 12233 23455555554311 1 122467888974321112
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-ChhHHH
Q 020299 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (328)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l~ 180 (328)
+.. ..+-+.|+..| +|.+.+|.-..... +.... --|+...++++.-.|--||..+. +++...
T Consensus 148 ~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~-----------y~g~~--~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 148 ERK-FEIADAVQQAG---ATELVVHGRTKEDG-----------YRAEH--INWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred hHH-HHHHHHHHhcC---CCEEEECCCCCccC-----------CCCCc--ccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 222 34555566677 56677885322110 00000 02567777777777888888875 588888
Q ss_pred HHHHhCCCC
Q 020299 181 DILATAKIP 189 (328)
Q Consensus 181 ~~~~~~~~~ 189 (328)
++++..+.+
T Consensus 211 ~~l~~~g~D 219 (312)
T PRK10550 211 QCMAITGCD 219 (312)
T ss_pred HHHhccCCC
Confidence 888766544
No 112
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.43 E-value=3.6e+02 Score=26.03 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=85.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCC
Q 020299 60 ATLYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEF 138 (328)
Q Consensus 60 A~~YgsE~~lG~al~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~ 138 (328)
.-.||.+..|.++|++..+.. +. +-++|.|-+-.. .--+.+..-+++.-++++ ++++.+|.|.....
T Consensus 77 dvVfGg~~kL~~~I~~~~~~~---~p~~~I~V~tTC~~~-iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~----- 144 (421)
T cd01976 77 DIVFGGDKKLAKAIDEAYELF---PLNKGISVQSECPVG-LIGDDIEAVARKASKELG---IPVVPVRCEGFRGV----- 144 (421)
T ss_pred ceecCCHHHHHHHHHHHHHhC---CCccEEEEECCChHH-HhccCHHHHHHHHHHhhC---CCEEEEeCCCccCC-----
Confidence 346788888899998875443 33 557777765321 112344444444334444 57888888754210
Q ss_pred CCccCCCCCccHHHHHHHHHHH-----HHcCCcceEEecCCC--hhHHHHHHHhCCCCCeeeccc--------------c
Q 020299 139 PIKKEDFLPMDFKSVWEAMEEC-----QNLGYTKAIGVSNFS--CKKLGDILATAKIPPAANQVE--------------M 197 (328)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~L~~l-----~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~--------------~ 197 (328)
+...-.......+++.|... ++.++|--||-.++. ...+.++++..++++...-.. +
T Consensus 145 --s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~l 222 (421)
T cd01976 145 --SQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKL 222 (421)
T ss_pred --cccHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCE
Confidence 00000001122233333321 114678888855544 456888888887664321111 1
Q ss_pred Ccccc-c--HHHHHHHH-HcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCC
Q 020299 198 NPLWQ-Q--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 198 ~~~~~-~--~~l~~~~~-~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s 251 (328)
|+... . ..+.++.+ +.||+.+...|++- .-..+.++++++.+|..
T Consensus 223 niv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi---------~~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 223 NLIHCYRSMNYIARMMEEKYGIPWMEYNFFGP---------TKIAESLRKIAAYFDDE 271 (421)
T ss_pred EEEECcHHHHHHHHHHHHHhCCcEEecccCCH---------HHHHHHHHHHHHHhCch
Confidence 11111 1 12334444 47999998877643 11234556666655553
No 113
>PRK07945 hypothetical protein; Provisional
Probab=39.05 E-value=3.3e+02 Score=25.45 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCCC--------ChHHHHHHHHHH--HhcCCCCCCCcEEEEecc--C-CCCCChhhHHH
Q 020299 40 ETTKLAILEAMKLGYRHFDTATLYQ--------TEQPLGDAIAEA--LSTGIIKSRDELFIASKL--W-CSDAHRELVVP 106 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~~Yg--------sE~~lG~al~~~--~~~~~~~~R~~~~I~tK~--~-~~~~~~~~i~~ 106 (328)
....++++.|.+.|+.++=.+++.. +...+-..++.. ++.. -++ +-|-.=+ . ..+...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~-I~Il~GiE~d~~~~g~~~~~-- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAP-FRILTGIEVDILDDGSLDQE-- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCC-ceEEEEeEecccCCCCcchh--
Confidence 4478999999999999886665532 122222222211 0011 122 2222221 1 112222322
Q ss_pred HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEe
Q 020299 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (328)
Q Consensus 107 ~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 171 (328)
++.|+. .||+ +.-+|+... .+.....+.|.++.+.+++..+|=
T Consensus 185 --~~~l~~--~D~v-IgSvH~~~~-----------------~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 --PELLDR--LDVV-VASVHSKLR-----------------MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred --HHHHHh--CCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCCeEEec
Confidence 333433 5666 677787532 123456688888888888888884
No 114
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=38.96 E-value=1.8e+02 Score=25.18 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeeccccCccc---ccHHHHHHHHHcCCeEEEeccCCC
Q 020299 154 WEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 154 ~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
++.+.+|++...+. ..+=|.++...+..+++...+ +++|+..+..- .-.++.++|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 45667777777666 445555667777677665543 46666655432 226888999999999999877653
No 115
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=3e+02 Score=24.87 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=61.4
Q ss_pred cceeeCCcCCC-----CChhHHHHHHHHHHHcCCCeEeC-CCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 020299 26 VLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDT-ATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS 97 (328)
Q Consensus 26 ~lglG~~~~~~-----~~~~~~~~~l~~A~~~Gin~~DT-A~~Yg--sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~ 97 (328)
.||+++|.... .++....+-....+.+..|.+.- +..|. +++.+-+|.+. ..+++..+.|+...
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~~ 75 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPRA 75 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEeccc
Confidence 57777777643 23323334334555666666643 23666 88888888875 58999999998532
Q ss_pred ----CCCh---hhHHHHHHHHHHHhCCCceeEEEeecCCCC
Q 020299 98 ----DAHR---ELVVPALQKSLENLQLEYIDLYVIHWPVSS 131 (328)
Q Consensus 98 ----~~~~---~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~ 131 (328)
.... ..+.+.+.+-++.|| +++..+++.-|...
T Consensus 76 iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 76 ITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred ccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1111 344455555566778 68999999988554
No 116
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=38.76 E-value=1.5e+02 Score=24.79 Aligned_cols=93 Identities=10% Similarity=-0.055 Sum_probs=52.1
Q ss_pred HHHcCCcceEEecCCChhHH----HHHHHhCCCCCeeeccccCccccc----------HHHHHHHHHcCCeEEEecc-CC
Q 020299 160 CQNLGYTKAIGVSNFSCKKL----GDILATAKIPPAANQVEMNPLWQQ----------NKLREFCKAKDIQLAAYAP-LG 224 (328)
Q Consensus 160 l~~~Gkir~iGvS~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~p-l~ 224 (328)
+.+...|...|++..+...+ .+.+...+.+.+++++--|-..+. ..+++.++++++.++-..+ +.
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 34456799999999886543 333332334556777777765331 5788889988887665532 21
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhCCCHHH
Q 020299 225 ARGTIWGSNRVMECEVLKEIAEAKGKTVAQ 254 (328)
Q Consensus 225 ~~G~l~~~~~~~~~~~l~~la~~~~~s~~q 254 (328)
............+.++++|+++++....
T Consensus 120 --~~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 --ANYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred --CcccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 1110000001124567778887765444
No 117
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.38 E-value=23 Score=31.41 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=27.2
Q ss_pred CCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCC
Q 020299 12 IPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYR 55 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin 55 (328)
+|+..+|+| -....-.|=.-.-.+.+.+++.+++..|+++||-
T Consensus 159 ~Pf~alGSG-slaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 159 LPFTALGSG-SLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred cceeeeccc-hHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhc
Confidence 777777777 2222111211111237889999999999999973
No 118
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.28 E-value=4.1e+02 Score=26.30 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHcCCcce----EEecCCChhHHHHHHHhCC-CCCeeeccccCccc--ccHHHHHHHHHcCC
Q 020299 149 DFKSVWEAMEECQNLGYTKA----IGVSNFSCKKLGDILATAK-IPPAANQVEMNPLW--QQNKLREFCKAKDI 215 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~Gkir~----iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~--~~~~l~~~~~~~gi 215 (328)
..++..++++.+++.|..-. +|+-+-+.+.+.+.++... .+++..+ ++.+. +...+.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcc
Confidence 46788899999999986433 4666666666665555432 3443333 33333 34677777776653
No 119
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=37.55 E-value=1.5e+02 Score=28.75 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcC-CcceEEecCCChhHHHHHHHhCCCCC-----eeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 153 VWEAMEECQNLG-YTKAIGVSNFSCKKLGDILATAKIPP-----AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 153 ~~~~L~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~-----~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
+.+.++.++++| .++++.|.+-....++++.+....+. +.+..+.....+-+++...|++.||.+..-..-
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 445566667777 56677777544444444444332221 222222333334478888888888866654443
No 120
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.39 E-value=1.4e+02 Score=25.94 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEec-CCChhHH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKL 179 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l 179 (328)
++.++.+. .+|.|++-+.+.....+. .+. +..+.+.... .+.+..+||. +-+++.+
T Consensus 13 ~eda~~~~-----~~Gad~iGfI~~~~S~R~----------------V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i 69 (210)
T PRK01222 13 PEDAEAAA-----ELGADAIGFVFYPKSPRY----------------VSP-EQAAELAAAL-PPFVKVVGVFVNASDEEI 69 (210)
T ss_pred HHHHHHHH-----HcCCCEEEEccCCCCCCc----------------CCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHH
Confidence 45554444 499999998643321111 112 2333333322 3568899987 5668888
Q ss_pred HHHHHhCCCCCeeeccccC
Q 020299 180 GDILATAKIPPAANQVEMN 198 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~~~ 198 (328)
.++++... ++++|++-+
T Consensus 70 ~~~~~~~~--~d~vQLHg~ 86 (210)
T PRK01222 70 DEIVETVP--LDLLQLHGD 86 (210)
T ss_pred HHHHHhcC--CCEEEECCC
Confidence 88887664 468998753
No 121
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.35 E-value=1.7e+02 Score=24.97 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg 116 (328)
.+.+++.+.++.+++.|+...|. | +..+..++++. .+.+ .++++++.-= ....+.+++.+......+.
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i---~--~~~l~p~m~~i-G~~w--~~gei~va~~----~~a~~~~~~~l~~l~~~~~ 76 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL---I--EKGLMAGMGVV-GKLF--EDGELFLPHV----MMSADAMLAGIKVLTPEME 76 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH---H--HHHHHHHHHHH-HHHH--cCCCccHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999876653 2 22333333322 0001 2333333111 1123444444544444443
Q ss_pred CC----ceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CcceEEecCCChhHHHHHHHhCCCCCe
Q 020299 117 LE----YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCKKLGDILATAKIPPA 191 (328)
Q Consensus 117 ~d----~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~ 191 (328)
.. .---+++-.+... ...-...-.-.-|+..| .+.++|.. -+.+.+.+.+... +|+
T Consensus 77 ~~~~~~~~~~vv~~t~~gd----------------~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~--~pd 137 (197)
T TIGR02370 77 KAVETEVLGKVVCGVAEGD----------------VHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKE--KPL 137 (197)
T ss_pred ccccCCCCCeEEEEeCCCc----------------hhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHc--CCC
Confidence 11 0011222222111 01122333334555667 67777854 4555655555544 456
Q ss_pred eeccccCccccc---HHHHHHHHHcCC
Q 020299 192 ANQVEMNPLWQQ---NKLREFCKAKDI 215 (328)
Q Consensus 192 ~~q~~~~~~~~~---~~l~~~~~~~gi 215 (328)
++.+++...... .++++.+++.|.
T Consensus 138 ~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 138 MLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EEEEccccccCHHHHHHHHHHHHHcCC
Confidence 776666554432 677888888753
No 122
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.81 E-value=3.5e+02 Score=25.06 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCChHH----HHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQP----LGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~----lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL 112 (328)
.+.++..++++.+.+.|+..|--+ |-|.+ +-+.++...+.+ ...++.|+|-.. .+.+ .-+.|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L 110 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAEL 110 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHH
Confidence 567888899999999999888533 42222 223333321111 122566666531 1222 34556
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q 020299 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (328)
Q Consensus 113 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 165 (328)
...|++++- +-|+..+...- . ..+. ...++.+++.++.+++.|.
T Consensus 111 ~~aGl~~v~-ISlDs~~~e~~---~-~i~~----~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 111 ADAGLKRLN-ISLDTLRPELF---A-ALTR----NGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHcCCCeEE-EEeccCCHHHh---h-hhcC----CCCHHHHHHHHHHHHHcCC
Confidence 667877765 34444432110 0 0011 1237788899988888774
No 123
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=36.73 E-value=1.9e+02 Score=27.89 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=36.8
Q ss_pred HcCCCeEeCCCCCC------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEE
Q 020299 51 KLGYRHFDTATLYQ------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYV 124 (328)
Q Consensus 51 ~~Gin~~DTA~~Yg------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~ 124 (328)
+.|=+|+|....|+ +...+=++|++. -++++.++-.+.. .....+-+-|-.+-- ..|-++
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q--------~~kl~h~sn~~~~-----~~~~~la~~L~~~s~-~~d~vf 104 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQ--------AEKLWHVSNLFYN-----EPQAELAEKLVELSP-FADRVF 104 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHH--------HHHhhhcccccCC-----hHHHHHHHHHHhhCc-cccEEE
Confidence 35778899888887 567777888763 4555555554322 233334444433332 366666
Q ss_pred eecC
Q 020299 125 IHWP 128 (328)
Q Consensus 125 lH~p 128 (328)
+-+.
T Consensus 105 f~NS 108 (404)
T COG4992 105 FCNS 108 (404)
T ss_pred EcCC
Confidence 6543
No 124
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=36.58 E-value=2e+02 Score=22.17 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC---CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 160 (328)
+|=-+.|+-|++. ...+..+++.+.+.++.+.. ...|++++-.+.... .+..++-+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~---------------~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE---------------LDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 4666778778766 56678899999999887643 357999998775432 3466777777776
Q ss_pred HHc
Q 020299 161 QNL 163 (328)
Q Consensus 161 ~~~ 163 (328)
.+.
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 554
No 125
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.38 E-value=3e+02 Score=24.27 Aligned_cols=153 Identities=15% Similarity=0.052 Sum_probs=89.6
Q ss_pred EEcCCCCcccccce--eeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 020299 15 VPLKSSNRRMPVLG--LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIAS 92 (328)
Q Consensus 15 ~~L~~~~~~vs~lg--lG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~t 92 (328)
++||.| +.++.|. .|-...| ..--+.+++.-++..|.+.- .|.+|..+-.+|++.-.-++ +=.++++.-
T Consensus 19 krLGGG-iP~GsL~lIEGd~~tG--KSvLsqr~~YG~L~~g~~v~----yvsTe~T~refi~qm~sl~y--dv~~~~l~G 89 (235)
T COG2874 19 KRLGGG-IPVGSLILIEGDNGTG--KSVLSQRFAYGFLMNGYRVT----YVSTELTVREFIKQMESLSY--DVSDFLLSG 89 (235)
T ss_pred hhccCC-CccCeEEEEECCCCcc--HHHHHHHHHHHHHhCCceEE----EEEechhHHHHHHHHHhcCC--CchHHHhcc
Confidence 355666 7777654 3333211 22335566666789998754 44578888888887544343 333433333
Q ss_pred c-------cCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q 020299 93 K-------LWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (328)
Q Consensus 93 K-------~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 165 (328)
+ +.+-..++...+.-++..++....-.-|++.+...+....-+ ......+.+..+..+.++||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gK 159 (235)
T COG2874 90 RLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGK 159 (235)
T ss_pred eeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCC
Confidence 3 333344456677777777777777678999988765432100 01135567777788888999
Q ss_pred cceEEecCCC--hhHHHHHHHhC
Q 020299 166 TKAIGVSNFS--CKKLGDILATA 186 (328)
Q Consensus 166 ir~iGvS~~~--~~~l~~~~~~~ 186 (328)
+--+-+.-+. .+.+-.+-..+
T Consensus 160 vIilTvhp~~l~e~~~~rirs~~ 182 (235)
T COG2874 160 VIILTVHPSALDEDVLTRIRSAC 182 (235)
T ss_pred EEEEEeChhhcCHHHHHHHHHhh
Confidence 9888776443 33344444443
No 126
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=36.37 E-value=52 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=29.3
Q ss_pred CeeeccccCcccccHHHHHHHH---HcCCeEEEeccCCCCCCCCCC
Q 020299 190 PAANQVEMNPLWQQNKLREFCK---AKDIQLAAYAPLGARGTIWGS 232 (328)
Q Consensus 190 ~~~~q~~~~~~~~~~~l~~~~~---~~gi~v~a~~pl~~~G~l~~~ 232 (328)
+.+|++++.++..-..++.-+. +.|=.++.|+||...|.++.+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 3467777777666566666554 336668999999886777643
No 127
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.18 E-value=44 Score=27.95 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHcC-CcceEEecCCCh--hHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEE
Q 020299 149 DFKSVWEAMEECQNLG-YTKAIGVSNFSC--KKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~G-kir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 219 (328)
...+++++|.++++.| +|..+|..|... ..+..++ ++ .+.+..|+-...-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3678999999999776 666666666553 3444444 33 35555665433336788889999999887
No 128
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.17 E-value=3.6e+02 Score=25.01 Aligned_cols=134 Identities=11% Similarity=0.090 Sum_probs=75.5
Q ss_pred CChhHHHHHHHHHHHcCCCeEeC----------CCCCC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC-CCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDT----------ATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAH 100 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DT----------A~~Yg-----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~-~~~ 100 (328)
.++++..+..+.+.+.|+..||. ...+| .-+.+.+.++... ..-++-|+.|+... +.+
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~------~a~d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVV------NAVDVPVTLKIRTGWAPE 147 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHH------HhcCCceEEEEEccccCC
Confidence 46677777778788899999992 33445 2445555555431 01134577777321 111
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-ChhHH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKL 179 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l 179 (328)
..... .+-+.|+..|. |.+.+|.-..... .. -..-|+.+.++++.=.|--||.... +++.+
T Consensus 148 ~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~--~~------------G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da 209 (321)
T PRK10415 148 HRNCV-EIAQLAEDCGI---QALTIHGRTRACL--FN------------GEAEYDSIRAVKQKVSIPVIANGDITDPLKA 209 (321)
T ss_pred cchHH-HHHHHHHHhCC---CEEEEecCccccc--cC------------CCcChHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 11121 23334566775 6667785432110 00 0112567777777767888888775 57888
Q ss_pred HHHHHhCCCCCeeeccc
Q 020299 180 GDILATAKIPPAANQVE 196 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~ 196 (328)
.++++..+.+ .+|+-
T Consensus 210 ~~~l~~~gad--gVmiG 224 (321)
T PRK10415 210 RAVLDYTGAD--ALMIG 224 (321)
T ss_pred HHHHhccCCC--EEEEC
Confidence 8888766544 44444
No 129
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.06 E-value=3.7e+02 Score=25.16 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=77.5
Q ss_pred EEEeecCCCCCCCCCCCCCccC---CCCCccHHHHHHHHHHHHH---cCCcceEEecC-----CChhHHHHHHHhCC--C
Q 020299 122 LYVIHWPVSSKPGSYEFPIKKE---DFLPMDFKSVWEAMEECQN---LGYTKAIGVSN-----FSCKKLGDILATAK--I 188 (328)
Q Consensus 122 l~~lH~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~l~~---~Gkir~iGvS~-----~~~~~l~~~~~~~~--~ 188 (328)
.+++|.|--......+...+.. +......+.+.+.++...+ ...|+.|=+.. .+++++.++++... .
T Consensus 2 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~ 81 (350)
T PRK08446 2 LLYIHIPFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYL 81 (350)
T ss_pred eEEEEeCCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhc
Confidence 4788988655544444322111 1111123344444443322 12466553332 34566666655432 1
Q ss_pred CC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCC---
Q 020299 189 PP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQG--- 264 (328)
Q Consensus 189 ~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--- 264 (328)
.. .-+-++.||-.-..+.++..++.|+.-+..+.-.. .++.++.+.+.+....+.-+++.+...+
T Consensus 82 ~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~-----------~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~ 150 (350)
T PRK08446 82 SKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSF-----------NEDKLKFLGRIHSQKQIIKAIENAKKAGFEN 150 (350)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC-----------CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 11 12335566655557899999999998887665542 3345555544443333444666666655
Q ss_pred --cEEeeCC--CCHHHHHHhhcc
Q 020299 265 --VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 265 --~~vi~g~--~~~~~l~enl~a 283 (328)
+-.+.|. .|.+.+++.++.
T Consensus 151 v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 151 ISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred EEEEeecCCCCCCHHHHHHHHHH
Confidence 1244542 466777666654
No 130
>PRK05660 HemN family oxidoreductase; Provisional
Probab=36.01 E-value=3.9e+02 Score=25.37 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=43.6
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCceeEEEeec-CCCCCCCCCCCCCccCCCCCccHHHHHH----HHHHHHHcCCcce
Q 020299 94 LWCSDAHRELVVPALQKSLENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVWE----AMEECQNLGYTKA 168 (328)
Q Consensus 94 ~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~L~~l~~~Gkir~ 168 (328)
.+-+..+.+.+.+.++..++ |+.++|.++.+-- |...-. . .... ..+.++.++ +.+.|.+.|. ..
T Consensus 166 ~Glpgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~-----~-~~~~--~~~~~~~~~~~~~~~~~L~~~Gy-~~ 235 (378)
T PRK05660 166 HGLPDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFG-----S-RPPV--LPDDDALWDIFEQGHQLLTAAGY-QQ 235 (378)
T ss_pred cCCCCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCccc-----c-cCCC--CcCHHHHHHHHHHHHHHHHHcCC-cE
Confidence 34566788888888887554 9999999988752 221100 0 0000 011222232 3456677785 56
Q ss_pred EEecCCChhH
Q 020299 169 IGVSNFSCKK 178 (328)
Q Consensus 169 iGvS~~~~~~ 178 (328)
+++|||....
T Consensus 236 yei~~fa~~~ 245 (378)
T PRK05660 236 YETSAYAKPG 245 (378)
T ss_pred eecccccCCC
Confidence 7999998543
No 131
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.90 E-value=2.2e+02 Score=27.03 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHH-HHHcC---CcceEEecC--CChhHHHHHHHhCC-CCCeeeccccCccccc----------HHHHHHH
Q 020299 148 MDFKSVWEAMEE-CQNLG---YTKAIGVSN--FSCKKLGDILATAK-IPPAANQVEMNPLWQQ----------NKLREFC 210 (328)
Q Consensus 148 ~~~~~~~~~L~~-l~~~G---kir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~~ 210 (328)
..++++++++.+ +++.| +|+++=+.+ .+.+.+.++.+..+ ....++-++||++... ..+.+..
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 358889998876 44555 345554544 44555666665554 3346777888876431 4677778
Q ss_pred HHcCCeEEEeccCCC
Q 020299 211 KAKDIQLAAYAPLGA 225 (328)
Q Consensus 211 ~~~gi~v~a~~pl~~ 225 (328)
+++|+.+......|.
T Consensus 339 ~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 339 LDAGLQVTVRKSYGT 353 (368)
T ss_pred HHCCCcEEeeCCCCc
Confidence 899999999887754
No 132
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.85 E-value=1.2e+02 Score=25.86 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHH--HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG--~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~ 113 (328)
.++++.....+.|.++|..++=|+..|. .-..++ +.+++.+ +.+ +-.|....-.+.+++.+-++.-..
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~~--v~ik~aGGikt~~~~l~~~~~g~~ 198 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GGR--VGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCC--ceEEEeCCCCCHHHHHHHHHhChh
Confidence 3568889999999999999999998886 222222 3344331 211 234443222366888888887777
Q ss_pred HhCCC
Q 020299 114 NLQLE 118 (328)
Q Consensus 114 ~Lg~d 118 (328)
|+|++
T Consensus 199 riG~s 203 (203)
T cd00959 199 RIGTS 203 (203)
T ss_pred hccCC
Confidence 87763
No 133
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=35.74 E-value=4.1e+02 Score=26.36 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=75.6
Q ss_pred EEEeecCCCCCCCCCCCCCcc--CCCCC---ccHHHHHHHHHHHHH----cC-CcceEEecC-----CChhHHHHHHHhC
Q 020299 122 LYVIHWPVSSKPGSYEFPIKK--EDFLP---MDFKSVWEAMEECQN----LG-YTKAIGVSN-----FSCKKLGDILATA 186 (328)
Q Consensus 122 l~~lH~p~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~L~~l~~----~G-kir~iGvS~-----~~~~~l~~~~~~~ 186 (328)
-+++|-|-.......+...+. ..... ...+.+.+.++.+.+ .| +|..|=+.. .+++++.++++..
T Consensus 165 sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i 244 (488)
T PRK08207 165 SIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELERLLEEI 244 (488)
T ss_pred EEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHHHHHHH
Confidence 588998855444333332111 00001 112333444444322 23 455553332 2366777776654
Q ss_pred C--C-CC-eeecc--cc-CcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHH
Q 020299 187 K--I-PP-AANQV--EM-NPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRW 259 (328)
Q Consensus 187 ~--~-~~-~~~q~--~~-~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 259 (328)
. + .. .+..+ +. +|-.-..+.++..++.|+.-+..++-.. ..+.++.+.+.|...-..-+++.
T Consensus 245 ~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~-----------~d~vLk~igR~ht~e~v~~ai~~ 313 (488)
T PRK08207 245 YENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTM-----------NDETLKAIGRHHTVEDIIEKFHL 313 (488)
T ss_pred HHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcC-----------CHHHHHHhCCCCCHHHHHHHHHH
Confidence 2 1 10 11122 22 2322347889999999998887766643 34556666544433333335666
Q ss_pred HhhCC-----cEEeeCC--CCHHHHHHhhcc
Q 020299 260 AYEQG-----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 260 ~l~~~-----~~vi~g~--~~~~~l~enl~a 283 (328)
+...| +..|+|. .+.+++.+.++.
T Consensus 314 ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~ 344 (488)
T PRK08207 314 AREMGFDNINMDLIIGLPGEGLEEVKHTLEE 344 (488)
T ss_pred HHhCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence 65554 2456664 466666666653
No 134
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.72 E-value=2.9e+02 Score=23.88 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
.++..+..+.|.+.| |+.+=++..++..++.+.+....-+.+.---=++ ...+-.+.+.+.|-.++ .||-.
T Consensus 19 ~e~a~~~~~al~~~G-i~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTV--l~~~~a~~a~~aGA~Fi-vsP~~----- 89 (204)
T TIGR01182 19 VDDALPLAKALIEGG-LRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTV--LNPEQLRQAVDAGAQFI-VSPGL----- 89 (204)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeC--CCHHHHHHHHHcCCCEE-ECCCC-----
Confidence 566777777777654 7888888777665443322211001110000000 12345566666777666 23321
Q ss_pred CCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcc
Q 020299 230 WGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQGVCVVVKSFNKERMKENLDI 283 (328)
Q Consensus 230 ~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a 283 (328)
.+.+. +++..+++..+||+.|+.++...+++
T Consensus 90 --------~~~v~---------------~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 90 --------TPELA---------------KHAQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred --------CHHHH---------------HHHHHcCCcEECCCCCHHHHHHHHHC
Confidence 13333 33444455667777777777777655
No 135
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=35.63 E-value=2.1e+02 Score=22.78 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC----CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL----EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE 159 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 159 (328)
+|=-+.|+-|++. ...+..+++.+.++++.+.. ...|++++-.+.... .+..++-+.|+.
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~---------------~~~~~l~~~L~~ 110 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN---------------APFSQLTEELSR 110 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc---------------CCHHHHHHHHHH
Confidence 4556777777654 45578899999999987753 458999999875432 346677777776
Q ss_pred HHH
Q 020299 160 CQN 162 (328)
Q Consensus 160 l~~ 162 (328)
+.+
T Consensus 111 ~l~ 113 (129)
T PRK01313 111 RIE 113 (129)
T ss_pred HHH
Confidence 654
No 136
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.54 E-value=3e+02 Score=23.90 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHH
Q 020299 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 182 (328)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+..+++......++..
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~----------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~ 72 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS----------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERA 72 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS----------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC----------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHH
Confidence 344555567999999999988 22111 1133444555555555 55556666666666664
Q ss_pred HH---hCCCCCeeeccccCccc--------------ccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHH
Q 020299 183 LA---TAKIPPAANQVEMNPLW--------------QQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIA 245 (328)
Q Consensus 183 ~~---~~~~~~~~~q~~~~~~~--------------~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la 245 (328)
++ .++.+..-+-++.|..+ .-.+.+.++++.|+.+ .+++-.. + ....+.+.+++
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~-~-------~~~~~~~~~~~ 143 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDA-S-------RTDPEELLELA 143 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTT-G-------GSSHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcccc-c-------cccHHHHHHHH
Confidence 43 34444444444455421 1157789999999999 3333221 1 12334444444
Q ss_pred HHhCCCHHHHHHHHHhhCC--cEEe---eCCCCHHHHHHhhcccC
Q 020299 246 EAKGKTVAQVCLRWAYEQG--VCVV---VKSFNKERMKENLDIFN 285 (328)
Q Consensus 246 ~~~~~s~~q~al~~~l~~~--~~vi---~g~~~~~~l~enl~a~~ 285 (328)
+.. ... + ...| .|..+|.++.+-++.+.
T Consensus 144 ~~~--------~~~----g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 144 EAL--------AEA----GADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHH--------HHH----T-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHH--------HHc----CCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 331 111 3 2333 58888988887776654
No 137
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.07 E-value=1.5e+02 Score=26.47 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=51.5
Q ss_pred eEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhH-------HHHHHHhCCCCCeee
Q 020299 121 DLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK-------LGDILATAKIPPAAN 193 (328)
Q Consensus 121 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~-------l~~~~~~~~~~~~~~ 193 (328)
+-++||-|-........++-+ -...+..+++.+.++.+++. ---++|+.||.... ++.+++..+
T Consensus 78 ~evlih~PmeP~~~~~~e~gt--L~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk------ 148 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGT--LRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALK------ 148 (250)
T ss_pred CEEEEeccCCcccCCCCCCCC--cccCCCHHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHH------
Confidence 347889875433222222110 00124577888999988876 55688999987433 333333322
Q ss_pred ccccCccccc------HHHHHHHHHcCCeEEEeccCCC
Q 020299 194 QVEMNPLWQQ------NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 194 q~~~~~~~~~------~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+.++++-+ .-.-..+++.||.++....|--
T Consensus 149 --~r~l~flDs~T~a~S~a~~iAk~~gVp~~~rdvfLD 184 (250)
T COG2861 149 --ERGLYFLDSGTIANSLAGKIAKEIGVPVIKRDVFLD 184 (250)
T ss_pred --HCCeEEEcccccccchhhhhHhhcCCceeeeeeeec
Confidence 12222222 2233446777888888777753
No 138
>PLN02363 phosphoribosylanthranilate isomerase
Probab=35.07 E-value=1.7e+02 Score=26.24 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEec-CCChhH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKK 178 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~ 178 (328)
+++.++.+.+ +|.|++-+.+.....+. .+. +..+.+........++.+||. |-+++.
T Consensus 56 ~~eda~~a~~-----~GaD~iGfIf~~~SpR~----------------Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~ 113 (256)
T PLN02363 56 SARDAAMAVE-----AGADFIGMILWPKSKRS----------------ISL-SVAKEISQVAREGGAKPVGVFVDDDANT 113 (256)
T ss_pred cHHHHHHHHH-----cCCCEEEEecCCCCCCc----------------CCH-HHHHHHHHhccccCccEEEEEeCCCHHH
Confidence 3566665554 99999998743321111 113 333334333333246779986 777888
Q ss_pred HHHHHHhCCCCCeeeccccC
Q 020299 179 LGDILATAKIPPAANQVEMN 198 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~ 198 (328)
+.++++..+ ++++|++-.
T Consensus 114 I~~~~~~~~--ld~VQLHG~ 131 (256)
T PLN02363 114 ILRAADSSD--LELVQLHGN 131 (256)
T ss_pred HHHHHHhcC--CCEEEECCC
Confidence 888887664 468898753
No 139
>PRK09061 D-glutamate deacylase; Validated
Probab=34.94 E-value=4.7e+02 Score=26.01 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-ChhhHHHHHHHHHHHhCC
Q 020299 42 TKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDA-HRELVVPALQKSLENLQL 117 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i~~~l~~sL~~Lg~ 117 (328)
..++++.|++.|...|=+...|- +...+-+.++.. .+-+..|.+....... ++.....++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 56778888999999997765562 555566666654 3445677776643321 122233344444433322
Q ss_pred CceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC
Q 020299 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (328)
Q Consensus 118 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~ 175 (328)
.-.-+.+.|-..... ....+.++.+++++++|.--..-++-|.
T Consensus 244 ~G~rv~IsHlss~g~---------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGAHMHICHVNSTSL---------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCCCEEEEeeccCCc---------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 223356667532111 1257788999999999854444444333
No 140
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.69 E-value=4.3e+02 Score=25.55 Aligned_cols=164 Identities=12% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccC----CCCCccHHHHHHHHHHHHHcC---CcceEEecC-----CC
Q 020299 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKE----DFLPMDFKSVWEAMEECQNLG---YTKAIGVSN-----FS 175 (328)
Q Consensus 108 l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~G---kir~iGvS~-----~~ 175 (328)
+....++.-..-+ -+++|-|-.......+...... +.....++.+.+.++.+.+.+ .+..|-+.. .+
T Consensus 28 ~~~~~~~~~~~~~-~lYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~ 106 (430)
T PRK08208 28 LSEVWEREYEDAL-SLYIHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN 106 (430)
T ss_pred HHHHhccCCCCce-EEEEEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC
Confidence 4444444443344 5899988654443333211110 010112345556666555432 344543332 34
Q ss_pred hhHHHHHHHhC----CCCC--eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhC
Q 020299 176 CKKLGDILATA----KIPP--AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKG 249 (328)
Q Consensus 176 ~~~l~~~~~~~----~~~~--~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~ 249 (328)
++++.++++.. .+.+ .-+.++.||-.-..+.++.+++.|+.-+..+.-.. ..+.++.+.+.+.
T Consensus 107 ~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~-----------~~~~L~~l~R~~~ 175 (430)
T PRK08208 107 AAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSF-----------HDSELHALHRPQK 175 (430)
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccC-----------CHHHHHHhCCCCC
Confidence 56666665543 2222 23455666655568899999999987777655432 3455656555443
Q ss_pred CCHHHHHHHHHhhCC--c---EEeeCC--CCHHHHHHhhcc
Q 020299 250 KTVAQVCLRWAYEQG--V---CVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 250 ~s~~q~al~~~l~~~--~---~vi~g~--~~~~~l~enl~a 283 (328)
.....-+++++...+ . ..|.|. .+.+++.+.++.
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 333444677777665 1 345663 466777777654
No 141
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.69 E-value=2.2e+02 Score=28.06 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=63.6
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH----cCCcceEEec--C
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN----LGYTKAIGVS--N 173 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~Gkir~iGvS--~ 173 (328)
+.+.|.+.++. +...|...+-++-=..|. ...++.+.+.++.+++ .|.++.++++ .
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~-----------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~ 177 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP-----------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAP 177 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC-----------------CCCHHHHHHHHHHHHHhccccCcceeeEEEeec
Confidence 57888888875 577887776553211111 1236667777777775 4677766664 4
Q ss_pred CChhHHHHHHHhCCCCCeeeccccCc-----ccc---------cHHHHHHHHHcCCeEEEeccC
Q 020299 174 FSCKKLGDILATAKIPPAANQVEMNP-----LWQ---------QNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~~-----~~~---------~~~l~~~~~~~gi~v~a~~pl 223 (328)
.+.+++.++.+..--...++|=-||. +++ .-+.++.+++.|+.-+..+.+
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 55778888877553233455544442 111 146788899999975544444
No 142
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=34.69 E-value=3.8e+02 Score=24.92 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEe----------CCCCCC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCh
Q 020299 37 SGSETTKLAILEAMKLGYRHFD----------TATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg-----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 101 (328)
.+++...+....+-+.|+..|| +...+| +...+.+.++.... . -. ++-|+.|+-......
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~-a---v~-~iPVTVKiRlG~d~~ 150 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE-A---VG-DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHH-h---hC-CCCeEEEEecccCcc
Confidence 5678888888888999999998 444555 56777777776421 1 12 578999983322112
Q ss_pred hhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-cceEEecC-CChhHH
Q 020299 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSN-FSCKKL 179 (328)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~-~~~~~l 179 (328)
+.....+.+.++.-| +|.+.+|.-.....+. -..-|+.+.++++.=. |--||=.+ ++++..
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~--------------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a 213 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGYL--------------GPADWDYIKELKEAVPSIPVIANGDIKSLEDA 213 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcCC--------------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHH
Confidence 223334555555666 6789999654332211 1134566666666644 55665544 577888
Q ss_pred HHHHHhCCCC
Q 020299 180 GDILATAKIP 189 (328)
Q Consensus 180 ~~~~~~~~~~ 189 (328)
.+.++..+.+
T Consensus 214 ~~~l~~tg~D 223 (323)
T COG0042 214 KEMLEYTGAD 223 (323)
T ss_pred HHHHHhhCCC
Confidence 8888876544
No 143
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=34.58 E-value=4.5e+02 Score=25.70 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCCccHHHHHHHHHHHHHcC-CcceEEec--CCC--hhHHHHHHHh---CCCCCeeeccccCcccccHHHHHHHHHcCCe
Q 020299 145 FLPMDFKSVWEAMEECQNLG-YTKAIGVS--NFS--CKKLGDILAT---AKIPPAANQVEMNPLWQQNKLREFCKAKDIQ 216 (328)
Q Consensus 145 ~~~~~~~~~~~~L~~l~~~G-kir~iGvS--~~~--~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~ 216 (328)
+.....+.+++.++.+++.. .++.+-+. +|. ...+.++++. .++... .+... .-..++++..++.|+.
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~---~~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARA---NVDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecC---CCCHHHHHHHHHcCCC
Confidence 33456889999999999874 56666544 333 3444444332 222211 11111 1247899999999887
Q ss_pred EEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCC----cEEeeCC--CCHHHHHHhhcc
Q 020299 217 LAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQG----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 217 v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~----~~vi~g~--~~~~~l~enl~a 283 (328)
.+..+.=.+ ..+.++.+.+.+...-..-+++++...+ ...|+|. .+.+.+++.++.
T Consensus 300 ~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 300 LLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 666544432 3445555533332222334677777777 3467784 688888888764
No 144
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=34.56 E-value=4e+02 Score=25.12 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcC--CcceEEecC-----CChhHHHHHHHhCC----CCCe-eeccccCcccccHHHHHHHHHcCCeE
Q 020299 150 FKSVWEAMEECQNLG--YTKAIGVSN-----FSCKKLGDILATAK----IPPA-ANQVEMNPLWQQNKLREFCKAKDIQL 217 (328)
Q Consensus 150 ~~~~~~~L~~l~~~G--kir~iGvS~-----~~~~~l~~~~~~~~----~~~~-~~q~~~~~~~~~~~l~~~~~~~gi~v 217 (328)
.+.+.+.++.+.+.| .|+.|-+.. .+++.+.++++... +... -+-++.||-.-..+.++..++.|+.-
T Consensus 34 ~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~r 113 (377)
T PRK08599 34 LDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNR 113 (377)
T ss_pred HHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCE
Confidence 445556665544443 566664432 23566666665432 2111 12234455444578999999999877
Q ss_pred EEeccCC
Q 020299 218 AAYAPLG 224 (328)
Q Consensus 218 ~a~~pl~ 224 (328)
+..++-.
T Consensus 114 vsiGvqS 120 (377)
T PRK08599 114 ISLGVQT 120 (377)
T ss_pred EEEeccc
Confidence 7666554
No 145
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=34.55 E-value=3.1e+02 Score=25.50 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCCeEEcCCCCcccccc--eeeCCcCCCCChhHHHHHHHHHH-HcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCC
Q 020299 11 SIPDVPLKSSNRRMPVL--GLGTAASPFSGSETTKLAILEAM-KLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKS 84 (328)
Q Consensus 11 ~~~~~~L~~~~~~vs~l--glG~~~~~~~~~~~~~~~l~~A~-~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~ 84 (328)
.++...++++ ..+..| .|....|....-.++.+++...+ +.+.+.|= .|. .-.-++..++..++.|.
T Consensus 13 ~v~~~~~~~~-~~v~~l~~~~~~~gF~A~~l~~A~~i~~~ml~~~~~~ifL---~~tg~mvsaGlr~ii~~Li~~~~--- 85 (316)
T PRK02301 13 PVKQAEVRPG-MTVGELVREYGGAGFGAGRLAEAVDIYEEMLADDDVTKFF---GLAGAMVPAGMRGIVSDLIRDGH--- 85 (316)
T ss_pred CCCCCCCCCC-CcHHHHHHHHHhcCccHHHHHHHHHHHHHHHhCCCCeEEE---EcccchhHHHHHHHHHHHHHcCC---
Confidence 3444444444 555443 22222222222356788888887 66666553 232 45567788887766554
Q ss_pred CCcEEEEeccCCCCCChhhHHHHH------------HHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHH
Q 020299 85 RDELFIASKLWCSDAHRELVVPAL------------QKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKS 152 (328)
Q Consensus 85 R~~~~I~tK~~~~~~~~~~i~~~l------------~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 152 (328)
=+++|+|=.... +.+.+++ +.-|++.|+++|-=+++..- .. ..+++
T Consensus 86 -VD~iVtTganie----hD~~~~lg~~~y~G~~~~dd~~Lr~~ginRIgd~~ip~e-~y----------------~~~E~ 143 (316)
T PRK02301 86 -IDVLVTTGANLT----HDVIEAIGGHHHHGTAHAHDEELRDEGIDRIYDVYLPQE-HF----------------ADFEE 143 (316)
T ss_pred -eeEEEcCCCchH----HHHHHHcCCCeeccCCCCCHHHHHHcCCCccceeCCChH-HH----------------HHHHH
Confidence 356677654211 1222222 56677777777655554321 00 11333
Q ss_pred HHH-HHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 153 VWE-AMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 153 ~~~-~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
.+. .++++.+++ .|++..+-..+-.. .+.+..++..|.+++|+|+.-...
T Consensus 144 ~i~~il~~~~~~~--------~~s~~e~i~~lGk~-------------i~~e~Sil~~Ay~~~VPIf~Pa~~ 194 (316)
T PRK02301 144 FLQDVFPGLEEEG--------TVSIRDLLTEIGRD-------------LDDDSGILAAAYECDVPVYCPAIQ 194 (316)
T ss_pred HHHHHHHhhhhcC--------CcCHHHHHHHHHhh-------------ccCCCcHHHHHHHcCCCEECCCcc
Confidence 332 344443332 25555543222111 112468999999999999875443
No 146
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.53 E-value=4e+02 Score=25.77 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCeEeCCCC---------CC---ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020299 43 KLAILEAMKLGYRHFDTATL---------YQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (328)
Q Consensus 43 ~~~l~~A~~~Gin~~DTA~~---------Yg---sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~ 110 (328)
.+.++...+.|+|.+...-- .+ +...+-++++...+.|+ ..+-+.-=++.+..+.+.+.+.++.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~----~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGF----PILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 35666666778888732221 11 23333455555422232 1121222335567788889888887
Q ss_pred HHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH-HHHHHHHHcCCcceEEecCCChh
Q 020299 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW-EAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
.+ +|+.+++.++.+.-.....- ... .... .....+.+ .+.+.|.+.|- +.+++++|...
T Consensus 217 ~~-~l~~~~is~y~L~~~~~T~l----~~~-~~~~-~~~~~~m~~~~~~~L~~~Gy-~~yei~~far~ 276 (430)
T PRK08208 217 AL-VYRPEELFLYPLYVRPLTGL----GRR-ARAW-DDQRLSLYRLARDLLLEAGY-TQTSMRMFRRN 276 (430)
T ss_pred HH-hCCCCEEEEccccccCCCcc----chh-cCCC-HHHHHHHHHHHHHHHHHcCC-eEEeecceecC
Confidence 76 58999999987753211110 000 0000 01112233 45666777785 66999999753
No 147
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.46 E-value=3.2e+02 Score=23.91 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=26.0
Q ss_pred cccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHH
Q 020299 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEA 76 (328)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~al~~~ 76 (328)
..+|.++-|+.+ +.+.+ +..++.|+..+..+...- +-..+.++.+..
T Consensus 70 ~~~pv~~~GGI~----s~~d~----~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 70 VFIPLTVGGGIR----SLEDA----RRLLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred CCCCEEEeCCCC----CHHHH----HHHHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 445655555554 33444 444456888777665433 445566666654
No 148
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.43 E-value=3.5e+02 Score=25.90 Aligned_cols=125 Identities=12% Similarity=0.036 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCeEeCCCCCC------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020299 43 KLAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (328)
Q Consensus 43 ~~~l~~A~~~Gin~~DTA~~Yg------------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~ 110 (328)
.+.++...++|+|.+...---+ +.+-+-++++...+.|+ +.+-+--=.+.+..+.+.+++.++.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~----~~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI----ENFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 3566666678898884333221 22223344444322232 1121211224456778888888876
Q ss_pred HHHHhCCCceeEEEeecCCCCCCCCCCCC-CccCCCCCccHH---HHH-HHHHHHHHcCCcceEEecCCChh
Q 020299 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFP-IKKEDFLPMDFK---SVW-EAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~-~~~~~~~~~~~~---~~~-~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
.+ +|+.++|.++.+.--. ..+ ... .........+.+ +.+ .+.+.|.+.|. .++++|||...
T Consensus 191 ~~-~l~p~~is~y~L~~~p-gT~---l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~~ 256 (400)
T PRK07379 191 AI-ALNPTHLSCYDLVLEP-GTA---FGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAKP 256 (400)
T ss_pred HH-cCCCCEEEEecceecC-Cch---hHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheECC
Confidence 55 4899999998876311 110 000 000000011111 223 35667888886 56899999843
No 149
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.37 E-value=77 Score=30.87 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-h--------hhHHHHHH--HHHHHhCCCceeEEEeecCCCCCC
Q 020299 65 TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAH-R--------ELVVPALQ--KSLENLQLEYIDLYVIHWPVSSKP 133 (328)
Q Consensus 65 sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~-~--------~~i~~~l~--~sL~~Lg~d~iDl~~lH~p~~~~~ 133 (328)
..+.+-.+-++.+... -+.++++++-++..... | -.|.-.++ +.-+||.+.|+|..-
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a--------- 216 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA--------- 216 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc---------
Confidence 4455555555544333 37889999888543210 0 00111122 223688889998541
Q ss_pred CCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCC-CCCeeeccccC
Q 020299 134 GSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK-IPPAANQVEMN 198 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~-~~~~~~q~~~~ 198 (328)
.+++++++-.++..++|+-.+||+-..-.+.+.++++..- .+...-|.+.+
T Consensus 217 --------------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 217 --------------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred --------------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 2388999999999999999999999988999999988653 33345566644
No 150
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.37 E-value=3.4e+02 Score=24.20 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA 60 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA 60 (328)
.+.++..++++.-.+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888899999999999999987
No 151
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.35 E-value=2.3e+02 Score=26.45 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=41.5
Q ss_pred HHHcCCcceEEecCCChhHHHHHHHhCC-----CCCeeeccccCcccccHHHHHHHHHcCCeEEEec
Q 020299 160 CQNLGYTKAIGVSNFSCKKLGDILATAK-----IPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 160 l~~~Gkir~iGvS~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 221 (328)
.-+.|=+..||....+++++++.++..+ -++-+|-+.+.+.....+.++.|.+.++.++..+
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 3457888899988889998877764442 2334443333221123678999999999999865
No 152
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=34.26 E-value=1.5e+02 Score=28.21 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCCCCCCC
Q 020299 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIW 230 (328)
Q Consensus 153 ~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~~G~l~ 230 (328)
-..++.++.+.|.+.+|-.-.-.--.+..+...-.-+|.. -|.+...+ +.+++.|+++||.|+.-+ |.+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~~---gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg~- 81 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPTK---GYAPDFVRDLRPLLPAAAEKGIKVITNA-----GGL- 81 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHHHHHHhCCCCEEEeC-----CCC-
Confidence 3467778888999999976443322222222111112221 23333322 689999999999999864 221
Q ss_pred CCCcccChHHHHHHHHHhCCC
Q 020299 231 GSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 231 ~~~~~~~~~~l~~la~~~~~s 251 (328)
.+.-..+.++++++++|.+
T Consensus 82 --np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 --NPAGCADIVREIARELGLS 100 (362)
T ss_pred --CHHHHHHHHHHHHHhcCCC
Confidence 1222457788888887764
No 153
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.18 E-value=3.1e+02 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=14.7
Q ss_pred CeeeccccCccccc--HHHHHHHHHcCC
Q 020299 190 PAANQVEMNPLWQQ--NKLREFCKAKDI 215 (328)
Q Consensus 190 ~~~~q~~~~~~~~~--~~l~~~~~~~gi 215 (328)
|.+.+.-||++.+. +.+++.|++.|+
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCC
Confidence 44566666665542 455666666555
No 154
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=33.68 E-value=2e+02 Score=27.57 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeeccccCccc---ccHHHHHHHHHcCCeEEEeccC
Q 020299 154 WEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 154 ~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 223 (328)
++.+.+|++...+. +.|-|.++..++..+++...+ +++|......- .-.++.+.|+.+||.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av--dil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV--DIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC--cEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56777787776665 666677778888888876543 46666654332 2368888999999999887754
No 155
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=33.16 E-value=3.7e+02 Score=27.53 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEec-CCChhHH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKL 179 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l 179 (328)
.+.++.+. .+|.||+-+.+.....+. .+.+.+.+.+.+....-.++.+||. |-+++.+
T Consensus 13 ~eda~~a~-----~~gaD~iGfIf~~~SpR~----------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i 71 (610)
T PRK13803 13 SALISKAV-----DMLPDFIGFIFYEKSPRF----------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAM 71 (610)
T ss_pred HHHHHHHH-----HcCCCEEEEEecCCCCCC----------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHH
Confidence 45555554 489999998754432111 1233313333333333357789986 7778888
Q ss_pred HHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEE
Q 020299 180 GDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLA 218 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~ 218 (328)
.++.+... ++++|++-..-....+.++..++.++.++
T Consensus 72 ~~~~~~~~--ld~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 72 LKFSKKNG--IDFVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred HHHHHhcC--CCEEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 88887664 46889875432111334444444455444
No 156
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=33.15 E-value=80 Score=28.53 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCCh-----hHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEe
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSC-----KKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 220 (328)
..+.-..|++|++.| +-||.||.. -++.+.++..+.. +.++-+++..|++.|+-.++|
T Consensus 94 ~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 345667888999888 889999973 2355555555432 122345566666665555544
No 157
>PRK10799 metal-binding protein; Provisional
Probab=32.47 E-value=1e+02 Score=27.45 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCeEeCCCCCCChHHHHHHHHHH
Q 020299 45 AILEAMKLGYRHFDTATLYQTEQPLGDAIAEA 76 (328)
Q Consensus 45 ~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~ 76 (328)
....|.+.|++.+|.. +|.+|...-+.|.+.
T Consensus 199 ~~~~A~~~gl~li~~G-H~~sE~~~~~~la~~ 229 (247)
T PRK10799 199 TIHSAREQGLHFYAAG-HHATERGGIRALSEW 229 (247)
T ss_pred HHHHHHHCCCeEEEcC-chHHHHHHHHHHHHH
Confidence 3455667777777744 566666633344433
No 158
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=32.30 E-value=4.1e+02 Score=24.56 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=73.6
Q ss_pred hHHHHHHHHHH-HcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHH----------
Q 020299 40 ETTKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPAL---------- 108 (328)
Q Consensus 40 ~~~~~~l~~A~-~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l---------- 108 (328)
.++.+++...+ +.+.+.|=|=..==.-.-++..++..++.|. =+++|+|=... .+.+.+++
T Consensus 31 ~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~----Vd~ivtTganl----~hD~~~~~g~~~~g~f~~ 102 (301)
T TIGR00321 31 GEADKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGM----IDALVTTGANL----EHDLIEALGPTHLGDFAV 102 (301)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCC----eeEEEeCCCch----HHHHHHHcCcccccCCCC
Confidence 56777888777 3334444211111145567778887766554 35667765421 12233333
Q ss_pred -HHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH-HHHHHHHHcCCcceEEecCCChhHH-HHHHHh
Q 020299 109 -QKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW-EAMEECQNLGYTKAIGVSNFSCKKL-GDILAT 185 (328)
Q Consensus 109 -~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~Gkir~iGvS~~~~~~l-~~~~~~ 185 (328)
+.-|++.|+++|-=+++..- .. ..+++.+ +.++++.++.+ .+++..+ .++-+.
T Consensus 103 dd~~Lr~~ginRI~dv~ip~e-~y----------------~~~E~~i~~i~~~~~~~~~-------~~s~~e~i~~lGk~ 158 (301)
T TIGR00321 103 DDKKLREEGINRIGDVFVPNE-NF----------------EVFEEWLVEIFSEMLGEQP-------IITPSEFIDEIGKR 158 (301)
T ss_pred ChHHHHHcCCCccceecCCHH-HH----------------HHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHHHhh
Confidence 66777777777655555321 00 1233333 24455443332 3555554 333221
Q ss_pred CCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 186 AKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 186 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
. + ..+..++-.|.++||+|+.-...
T Consensus 159 i--~-----------~~e~Sil~~Ayk~~VPIf~Pa~~ 183 (301)
T TIGR00321 159 I--N-----------DKRSSIRYAAYKRKIPIFCPALT 183 (301)
T ss_pred c--C-----------CccchHHHHHHHcCCCEECCCch
Confidence 1 1 02578999999999999875443
No 159
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=32.20 E-value=34 Score=30.30 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCCcccccceeeCCcCCC-------------CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHH
Q 020299 18 KSSNRRMPVLGLGTAASPF-------------SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEA 76 (328)
Q Consensus 18 ~~~~~~vs~lglG~~~~~~-------------~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~ 76 (328)
|+.+..|.+|++.+...+. ++-+-.......|.+.|++.||.. +|.+|...=+.|.++
T Consensus 164 g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 164 GDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred CCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 3555778888766544221 222334456667788888888865 677777655555544
No 160
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.16 E-value=4.3e+02 Score=25.24 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHh-----cCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCC
Q 020299 65 TEQPLGDAIAEALS-----TGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFP 139 (328)
Q Consensus 65 sE~~lG~al~~~~~-----~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 139 (328)
+-..+-++++.... .|+ ....+.|+|-... ..+.+-.++ +.++-=.+-||.++........ +
T Consensus 191 N~d~V~~~i~~l~~~~~~g~gi--s~r~ITvST~Gl~-----~~i~~la~~-----~l~~~LavSLha~d~e~R~~l~-p 257 (373)
T PRK14459 191 NYKRVVAAVRRITAPAPEGLGI--SARNVTVSTVGLV-----PAIRKLADE-----GLPVTLAVSLHAPDDELRDELV-P 257 (373)
T ss_pred hHHHHHHHHHHHhCcccccCCc--cCCEEEEECcCch-----hHHHHHHHh-----cCCeEEEEEeCCCCHHHHHHhc-C
Confidence 55667777776522 122 2335666665311 233332232 3333334678888654320000 0
Q ss_pred CccCCCCCccHHHHHHHHHHHHH-cCC---cceEEecCCC--hhHHHHHHHhCC-C---CCeeeccccCccccc------
Q 020299 140 IKKEDFLPMDFKSVWEAMEECQN-LGY---TKAIGVSNFS--CKKLGDILATAK-I---PPAANQVEMNPLWQQ------ 203 (328)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~l~~-~Gk---ir~iGvS~~~--~~~l~~~~~~~~-~---~~~~~q~~~~~~~~~------ 203 (328)
. +. ...++++++++.++.+ .|+ |+++=+.+.+ .+++.++.+..+ . ...++-++||+....
T Consensus 258 ~--n~--~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~ 333 (373)
T PRK14459 258 V--NT--RWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASP 333 (373)
T ss_pred c--cc--CCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCC
Confidence 0 00 1348889999888764 353 5566555444 444444444433 2 356888999986421
Q ss_pred ----HHHHHHHHHcCCeEEEeccCCC
Q 020299 204 ----NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 204 ----~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
..+.+..+++||.+......|.
T Consensus 334 ~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 334 PEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred HHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 4677888999999999888764
No 161
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.99 E-value=4.3e+02 Score=24.71 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 020299 39 SETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (328)
Q Consensus 39 ~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~L 115 (328)
+++..+.+....+.|++.|=.--... .+...=+++|+. -.+++.|..-.. ...+.+...+.++ .|+.+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~-------~g~~~~l~vDaN-~~~~~~~A~~~~~-~l~~~ 212 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA-------VGDGVGLMVDYN-QSLTVPEAIERGQ-ALDQE 212 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh-------hCCCCEEEEeCC-CCcCHHHHHHHHH-HHHcC
Confidence 45555666666778887653211111 122222445543 234555555543 2334444333222 23333
Q ss_pred CCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeec
Q 020299 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQ 194 (328)
Q Consensus 116 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q 194 (328)
++.++..|-.. +-++.+.++++.--|. +.|=+.+++..+..+++...+ +++|
T Consensus 213 -----~i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~--d~i~ 265 (355)
T cd03321 213 -----GLTWIEEPTLQ--------------------HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC--DLVM 265 (355)
T ss_pred -----CCCEEECCCCC--------------------cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC--CeEe
Confidence 45555555321 2245666777664333 456666788888888876543 4666
Q ss_pred cccCccc---ccHHHHHHHHHcCCeEEE
Q 020299 195 VEMNPLW---QQNKLREFCKAKDIQLAA 219 (328)
Q Consensus 195 ~~~~~~~---~~~~l~~~~~~~gi~v~a 219 (328)
...+.+- .-.++.++|+.+|+.++.
T Consensus 266 ~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 266 PDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred cCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 6555432 225788899999998753
No 162
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.98 E-value=3.4e+02 Score=23.52 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC-CCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA-TLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg--sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~ 113 (328)
.+.++..++++...+.||.+|+.. +..+ ..+.+.+..+.. +...+...+. ...+.++.+++.. .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~-----~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-------PNARLQALCR-----ANEEDIERAVEAA-K 77 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-------HSSEEEEEEE-----SCHHHHHHHHHHH-H
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-------cccccceeee-----ehHHHHHHHHHhh-H
Confidence 467888899999899999999999 3333 223344444332 2333322222 2346676666543 5
Q ss_pred HhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC---hhHHHHHHHhCC-CC
Q 020299 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS---CKKLGDILATAK-IP 189 (328)
Q Consensus 114 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~---~~~l~~~~~~~~-~~ 189 (328)
..|.+.+.++.-=++ .... .....+. ....+.+.+.++.+++.|..-.+++...+ ++.+.++.+... ..
T Consensus 78 ~~g~~~i~i~~~~s~-~~~~--~~~~~~~----~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 78 EAGIDIIRIFISVSD-LHIR--KNLNKSR----EEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HTTSSEEEEEEETSH-HHHH--HHTCSHH----HHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred hccCCEEEecCcccH-HHHH--HhhcCCH----HHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC
Confidence 688888876642111 0000 0000000 01145566777888889988888875544 444443333221 12
Q ss_pred Ceeeccc--cCccccc--HHHHHHHHHc----CCeEEEeccCC
Q 020299 190 PAANQVE--MNPLWQQ--NKLREFCKAK----DIQLAAYAPLG 224 (328)
Q Consensus 190 ~~~~q~~--~~~~~~~--~~l~~~~~~~----gi~v~a~~pl~ 224 (328)
++.+.+. +..+.+. .+++...+++ .+++.++.-++
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 2222221 2222232 4555555542 35556666554
No 163
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=31.71 E-value=5e+02 Score=25.42 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=62.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC----ceeEEEeecCCCCCCC
Q 020299 59 TATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE----YIDLYVIHWPVSSKPG 134 (328)
Q Consensus 59 TA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d----~iDl~~lH~p~~~~~~ 134 (328)
..-.||.|+-|-++|++..+... +.+=++|.|-+-.. .--+.+..-+++.-++|.-+ .+.++.+|.|+....
T Consensus 67 ~dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~e-iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs- 142 (457)
T TIGR02932 67 ESAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTE-TIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS- 142 (457)
T ss_pred CceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHH-hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc-
Confidence 33478888899999988643320 12346666664221 11244444444432222211 368889998865421
Q ss_pred CCCCCCccCCCCCccHHHHHHHHHHHH------HcCCcceEEecCC--ChhHHHHHHHhCCCCCee
Q 020299 135 SYEFPIKKEDFLPMDFKSVWEAMEECQ------NLGYTKAIGVSNF--SCKKLGDILATAKIPPAA 192 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~L~~l~------~~Gkir~iGvS~~--~~~~l~~~~~~~~~~~~~ 192 (328)
. ..-.+.+++++-+.. .+++|--||-.+. +.+.+.++++..++++.+
T Consensus 143 -~----------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 143 -Q----------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred -H----------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 0 011333443333221 2466777764332 455788888887766443
No 164
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.66 E-value=2.6e+02 Score=26.40 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHcC----CcceEEecC--CChhHHHHHHHhCC-CCCeeeccccCccccc----------HHHHHHHH
Q 020299 149 DFKSVWEAMEECQNLG----YTKAIGVSN--FSCKKLGDILATAK-IPPAANQVEMNPLWQQ----------NKLREFCK 211 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~G----kir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~~~ 211 (328)
.+++++++++.+.+.+ +|+++=+.+ -+.++++++.+... .+..++-++||++... ..+.+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 4789999999887754 234554443 44566666665543 3456777888886521 35666788
Q ss_pred HcCCeEEEeccCCC
Q 020299 212 AKDIQLAAYAPLGA 225 (328)
Q Consensus 212 ~~gi~v~a~~pl~~ 225 (328)
++|+.+......|.
T Consensus 324 ~~gi~v~ir~~~g~ 337 (356)
T PRK14455 324 KNGVNCTIRREHGT 337 (356)
T ss_pred HCCCcEEEeCCCCc
Confidence 99999988877754
No 165
>PRK14017 galactonate dehydratase; Provisional
Probab=31.31 E-value=4.6e+02 Score=24.83 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCC-----CCCChHHHH------HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH
Q 020299 38 GSETTKLAILEAMKLGYRHFDTAT-----LYQTEQPLG------DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~-----~YgsE~~lG------~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 106 (328)
++++..+.+..+.+.|++.|=.-- .++.+..+. +++++. --+++.|..-.. ...+.+...
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~-------~g~~~~l~vDaN-~~w~~~~A~- 194 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA-------VGPEIGIGVDFH-GRVHKPMAK- 194 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH-------hCCCCeEEEECC-CCCCHHHHH-
Confidence 456677777888899999885421 111111111 234432 123445555543 234444332
Q ss_pred HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHh
Q 020299 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILAT 185 (328)
Q Consensus 107 ~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~ 185 (328)
+-++.|. .+++.++-.|-.. +-++.+.+|++...+. ..|=|.++...+..+++.
T Consensus 195 ---~~~~~l~--~~~~~~iEeP~~~--------------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~ 249 (382)
T PRK14017 195 ---VLAKELE--PYRPMFIEEPVLP--------------------ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA 249 (382)
T ss_pred ---HHHHhhc--ccCCCeEECCCCc--------------------CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc
Confidence 2223333 2456666666421 1246778888887666 667778889999999887
Q ss_pred CCCCCeeeccccCcc---cccHHHHHHHHHcCCeEEEeccC
Q 020299 186 AKIPPAANQVEMNPL---WQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 186 ~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
..+ +++|.....+ .+-..+.+.|+.+||.++.++..
T Consensus 250 ~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 250 GGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred CCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 644 4677665543 22378999999999999887643
No 166
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=31.17 E-value=5.9e+02 Score=26.03 Aligned_cols=210 Identities=14% Similarity=0.088 Sum_probs=114.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCCh-------------HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-----
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTE-------------QPLGDAIAEALSTGIIKSRDELFIASKLWCSD----- 98 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE-------------~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~----- 98 (328)
..++...++=+..+++|-+.+.|...+.|- ++...+++-. ... ...+++|+.-+++..
T Consensus 40 ~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA--r~a--~~~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 40 SHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA--REA--AGDDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred cCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH--HHH--hcCCCeEEEeCCCCCCCCCC
Confidence 455656665555679999999888654432 2223333311 111 113477887776532
Q ss_pred --CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CcceEEecCCC
Q 020299 99 --AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFS 175 (328)
Q Consensus 99 --~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~ 175 (328)
.+.+.+.+......+.|.-.-+|++++-... +..++..+++.+++.+ +=-.+.++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~-------------------~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~ 176 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLEEGVDGLLLETFY-------------------DLEELLLALEAAREKTDLPIIAQVAFHE 176 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccC-------------------CHHHHHHHHHHHHHhCCCcEEEEEEECC
Confidence 3567788888888888855669999998542 2667777777777665 22234444322
Q ss_pred ---------hhHHHHHHHhCCCCCeeeccccCc-ccccHHHHHHHHH-cCCeEEEeccCCCCCCCCCCCcccChHHHHHH
Q 020299 176 ---------CKKLGDILATAKIPPAANQVEMNP-LWQQNKLREFCKA-KDIQLAAYAPLGARGTIWGSNRVMECEVLKEI 244 (328)
Q Consensus 176 ---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~~~~l~~~~~~-~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~l 244 (328)
...+...++. .+++.+.+++.. -..-..+++.... .++.+++|- -+ |....... ...
T Consensus 177 ~g~l~~G~~~~~~~~~~~~--~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vyp-Na--G~~~~~~~----~~~--- 244 (612)
T PRK08645 177 DGVTQNGTSLEEALKELVA--AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYP-NA--GLPEYVDG----RYV--- 244 (612)
T ss_pred CCeeCCCCCHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEE-CC--CCCCCCCC----ccc---
Confidence 2222222222 335677777763 2222444444443 255666553 22 33210000 000
Q ss_pred HHHhCC---CHHHHHHHHHhhCCcEEeeCC--CCHHHHHHhhcccC
Q 020299 245 AEAKGK---TVAQVCLRWAYEQGVCVVVKS--FNKERMKENLDIFN 285 (328)
Q Consensus 245 a~~~~~---s~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 285 (328)
+.. ..++.+..|.-. |+.+|=|+ ++|+||++--+.++
T Consensus 245 ---~~~~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 245 ---YSANPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred ---cCCCHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 111 146667778665 76666554 68888888777665
No 167
>PRK05660 HemN family oxidoreductase; Provisional
Probab=31.02 E-value=4.7e+02 Score=24.81 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCcceEEecCCC-----hhHHHHHHHhCC----CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCC
Q 020299 164 GYTKAIGVSNFS-----CKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSN 233 (328)
Q Consensus 164 Gkir~iGvS~~~-----~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~ 233 (328)
..|+.|=+..-+ ++++.++++... +.+ .-+-++.||-.-..+.+...++.|+.-+..+.-..
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~-------- 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSF-------- 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcC--------
Confidence 356666554322 466676665532 111 23344566655567889999999998888776543
Q ss_pred cccChHHHHHHHHHhCCCHHHHHHHHHhhCC-----cEEeeCC--CCHHHHHHhhcc
Q 020299 234 RVMECEVLKEIAEAKGKTVAQVCLRWAYEQG-----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 234 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~-----~~vi~g~--~~~~~l~enl~a 283 (328)
..+.++.+.+.+....+.-+++.+...| +..+.|. .+.+++.+.++.
T Consensus 129 ---~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~ 182 (378)
T PRK05660 129 ---SEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQ 182 (378)
T ss_pred ---CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 3455555544443333333666666655 1234443 466777666653
No 168
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=30.82 E-value=2.9e+02 Score=22.47 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=45.0
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC--CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
.|=-+.|+-|++.....+..+++.+.++++.+. +...|++++-.+... ..+..++.+.|..|.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~---------------~~~~~~l~~~l~~LL 112 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA---------------KASNPQLRDAFLRLL 112 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc---------------cCCHHHHHHHHHHHH
Confidence 466677777776555667889999998887653 233488888776432 235777888888877
Q ss_pred Hc
Q 020299 162 NL 163 (328)
Q Consensus 162 ~~ 163 (328)
+.
T Consensus 113 ~k 114 (145)
T PRK04820 113 RR 114 (145)
T ss_pred HH
Confidence 65
No 169
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=30.80 E-value=39 Score=32.34 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHHcCCCeE-eCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc----------CCCCCChhhHH
Q 020299 37 SGSETTKLAILEAMKLGYRHF-DTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL----------WCSDAHRELVV 105 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~----------~~~~~~~~~i~ 105 (328)
.+.+.-.+-+..|.+.|-..+ |-+.. |.-..+-+.+- .+..+-|.|=- ...+.+.+.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLStg-gdl~~iR~~il---------~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLSTG-GDLDEIRRAIL---------ENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---S-TTHHHHHHHHH---------HT-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCC-CCHHHHHHHHH---------HhCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 344555667788999998754 65532 23323333332 12334444321 12356778888
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHh
Q 020299 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (328)
Q Consensus 106 ~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 185 (328)
+.+++..+ +-+|.+-+|.-- ..+.++.++++|++- |+-+-....+..++..
T Consensus 143 ~~ie~qa~----~GVDfmtiH~gi-----------------------t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~ 193 (420)
T PF01964_consen 143 DVIEKQAK----DGVDFMTIHCGI-----------------------TRETLERLKKSGRIM--GIVSRGGSILAAWMLH 193 (420)
T ss_dssp HHHHHHHH----HT--EEEE-TT-------------------------GGGGGGGT--TSSS------HHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCEEEEccch-----------------------hHHHHHHHhhhcccc--CccccchHHHHHHHHh
Confidence 88887665 357889999642 235667777776543 4444444444443332
Q ss_pred CCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 186 AKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 186 ~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
.. .=||++.. +++++.|++++|.+---..|.- |.+
T Consensus 194 n~--------~ENPly~~fD~lLeI~k~yDVtLSLGDglRP-G~i 229 (420)
T PF01964_consen 194 NG--------KENPLYEHFDRLLEIAKEYDVTLSLGDGLRP-GCI 229 (420)
T ss_dssp HT--------S--HHHHTHHHHHHHHTTTT-EEEE--TT---SSG
T ss_pred cC--------CcCcHHHhHHHHHHHHHHhCeeEecccccCC-CCc
Confidence 21 22444443 6777777777777765554443 444
No 170
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.71 E-value=4.7e+02 Score=24.71 Aligned_cols=96 Identities=8% Similarity=0.114 Sum_probs=56.4
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CcceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~ 177 (328)
++.+. +..+-+.|.++|+++|++- +|.. -+.-++.+..+.+.+ ..+..+++....+
T Consensus 20 ~s~~~-k~~ia~~L~~~Gv~~IEvG---~p~~-------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~ 76 (365)
T TIGR02660 20 FTAAE-KLAIARALDEAGVDELEVG---IPAM-------------------GEEERAVIRAIVALGLPARLMAWCRARDA 76 (365)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEe---CCCC-------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHH
Confidence 44443 3445566999999999985 3421 122355666666664 3677777777778
Q ss_pred HHHHHHHhCCCCCeeeccccCcccc--------c------HHHHHHHHHcCCeEE
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQ--------Q------NKLREFCKAKDIQLA 218 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~v~ 218 (328)
.++.+.+. +.+...+-+..|..+. + .+.+++++++|..+.
T Consensus 77 di~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 77 DIEAAARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 88777764 3332222223332211 1 367888999998754
No 171
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=30.70 E-value=2.7e+02 Score=25.56 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=111.1
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCC------ChH----HHHHHHHHHHh------cCCCCCCCcEEEEeccCCC----
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQ------TEQ----PLGDAIAEALS------TGIIKSRDELFIASKLWCS---- 97 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg------sE~----~lG~al~~~~~------~~~~~~R~~~~I~tK~~~~---- 97 (328)
.++..+++-...+++|-+.++|+ .|. +|+ .+.+.++...+ +-+ -.+...|+.-+++.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~~ 117 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAAL 117 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhhc
Confidence 44556666666789999999887 454 222 22222111100 011 12333345555331
Q ss_pred --------CCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceE
Q 020299 98 --------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI 169 (328)
Q Consensus 98 --------~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 169 (328)
..+.+.+.+-...-++.|.-.-+|++.+-...... ..+.+.+.++++ +|=-.|
T Consensus 118 a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~----------------Ea~Aiv~l~~~~---s~p~wI 178 (300)
T COG2040 118 ADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNIT----------------EAEAIVQLVQEF---SKPAWI 178 (300)
T ss_pred ChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChH----------------HHHHHHHHHHHh---CCceEE
Confidence 22345455555666667776679999887643211 144455555555 888899
Q ss_pred EecCCCh------hHHHHHHHhCC-C-CCeeeccccCcccccHHHHHHH--HHcCCeEEEeccCCCCCCCCCCCc-ccCh
Q 020299 170 GVSNFSC------KKLGDILATAK-I-PPAANQVEMNPLWQQNKLREFC--KAKDIQLAAYAPLGARGTIWGSNR-VMEC 238 (328)
Q Consensus 170 GvS~~~~------~~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~l~~~~--~~~gi~v~a~~pl~~~G~l~~~~~-~~~~ 238 (328)
++|-.+. ..+.++..... . ......+++...++-..+++.. ...+++++.|-- . |--..... ....
T Consensus 179 SfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~k~w~~ 255 (300)
T COG2040 179 SFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAGKTWHG 255 (300)
T ss_pred EEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCCCcCCC
Confidence 9987642 22444444332 2 2344445554444446777777 445778888754 2 32211110 0000
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCcEEeeCC--CCHHHHHHhhcccC
Q 020299 239 EVLKEIAEAKGKTVAQVCLRWAYEQGVCVVVKS--FNKERMKENLDIFN 285 (328)
Q Consensus 239 ~~l~~la~~~~~s~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 285 (328)
+ ...+. +-.+++..|+-. |..+|=|+ +++.||.+.-++++
T Consensus 256 p--~~~~~----~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 256 P--ALSAD----SYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred C--CCchh----HHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 0 00000 235667888766 44455444 57888887665543
No 172
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=30.67 E-value=4.3e+02 Score=24.30 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC----------CCCCC-----hHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-CCCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQT-----EQPLGDAIAEALSTGIIKSRDELFIASKLWC-SDAH 100 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA----------~~Ygs-----E~~lG~al~~~~~~~~~~~R~~~~I~tK~~~-~~~~ 100 (328)
.++++..+..+.+.+.|+..||.- ..+|+ .+.+.+.++.. . .+-++-|+.|+.. .+.+
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r-----~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-V-----DAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-H-----hhcCCCEEEEEEcccCCC
Confidence 567888888888889999988852 12232 34555555543 1 1123567888632 1111
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-ChhHH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKL 179 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l 179 (328)
.... ..+-+.|+..|+ |.+.+|....... ..-...|+.+.++++.=.+--||.... +++.+
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~--------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da 207 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQG--------------YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDA 207 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEccccccc--------------CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHH
Confidence 1112 234445667785 4555674321100 001124677777777766777887765 47788
Q ss_pred HHHHHhCCCCCeeeccc
Q 020299 180 GDILATAKIPPAANQVE 196 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~ 196 (328)
.++++..+.+ .+|+-
T Consensus 208 ~~~l~~~gad--~Vmig 222 (319)
T TIGR00737 208 KAMLETTGCD--GVMIG 222 (319)
T ss_pred HHHHHhhCCC--EEEEC
Confidence 8888666544 44443
No 173
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=30.59 E-value=3.6e+02 Score=23.70 Aligned_cols=88 Identities=8% Similarity=0.212 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCC---------CHHHHHHHHHhhCC-cEEeeCCCC
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK---------TVAQVCLRWAYEQG-VCVVVKSFN 273 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~---------s~~q~al~~~l~~~-~~vi~g~~~ 273 (328)
+++.+..++.|+..++++.+.. ......+..+|++.|+ +..+++-.++ ..| .++|++++.
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~a 144 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYS---------EYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKFEARIIAVAA 144 (223)
T ss_pred HHHHHHHHHcCCCEEEECCccc---------HHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCCeEEEEEEec
Confidence 4566666666766666555432 1124556666776553 4555444444 667 445544443
Q ss_pred HHHHHHhhcccCCcCCHHHHHHhhcCCCCCC
Q 020299 274 KERMKENLDIFNWELTDEETKKISDIPQSRG 304 (328)
Q Consensus 274 ~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 304 (328)
..|.+ .-+...++++.++.|.++.+++.
T Consensus 145 -~gL~~--~~LGr~i~~e~i~~L~~~~~~~g 172 (223)
T TIGR00290 145 -EGLDE--SWLGRRIDRKMIDELKKLNEKYG 172 (223)
T ss_pred -CCCCh--HHcCCcccHHHHHHHHHHHhccC
Confidence 23432 22456899999988888766443
No 174
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.49 E-value=5.2e+02 Score=25.26 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=68.2
Q ss_pred CCCccHHHHHHHHHHHHHcCCcceEEecC--CC-----hhHHHHHHHhC-CCC--CeeeccccCcccccHHHHHHHHHcC
Q 020299 145 FLPMDFKSVWEAMEECQNLGYTKAIGVSN--FS-----CKKLGDILATA-KIP--PAANQVEMNPLWQQNKLREFCKAKD 214 (328)
Q Consensus 145 ~~~~~~~~~~~~L~~l~~~Gkir~iGvS~--~~-----~~~l~~~~~~~-~~~--~~~~q~~~~~~~~~~~l~~~~~~~g 214 (328)
......+++.+.++.++++| ++.|-+.. ++ ...+.++++.. ... ..+.....+|..-.+++++..++.+
T Consensus 180 ~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~ 258 (449)
T PRK14332 180 ERSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNP 258 (449)
T ss_pred cccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCC
Confidence 34567999999999999987 77775542 21 11233333321 111 1122222233333578999988876
Q ss_pred CeE-EEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhC--C----cEEeeCC--CCHHHHHHhhcc
Q 020299 215 IQL-AAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQ--G----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 215 i~v-~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~--~----~~vi~g~--~~~~~l~enl~a 283 (328)
-.+ ..+-|+.. | .++.++.+-+.+...-..-+++++... + +..|+|. .+.+++++.++.
T Consensus 259 ~~~~~l~lgvQS-g---------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~ 326 (449)
T PRK14332 259 RFCPNIHLPLQA-G---------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAV 326 (449)
T ss_pred CccceEEECCCc-C---------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHH
Confidence 311 22223332 2 234555554444332233355666553 2 3577884 677888777664
No 175
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.47 E-value=1.8e+02 Score=25.92 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCC---------HHHHHHHHHhhCC--cEEeeCCC
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT---------VAQVCLRWAYEQG--VCVVVKSF 272 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s---------~~q~al~~~l~~~--~~vi~g~~ 272 (328)
.++.++|+++||.+++ +|+.. +.+..+ .++++. ..--.|+++-+.+ +.+-.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6788899999888876 34432 222222 333321 1112456665555 66668999
Q ss_pred CHHHHHHhhccc
Q 020299 273 NKERMKENLDIF 284 (328)
Q Consensus 273 ~~~~l~enl~a~ 284 (328)
+.+++++.++.+
T Consensus 124 tl~EI~~Av~~~ 135 (241)
T PF03102_consen 124 TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988876
No 176
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.97 E-value=5.4e+02 Score=25.26 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCeEe--------CCCCCC-------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH
Q 020299 42 TKLAILEAMKLGYRHFD--------TATLYQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~D--------TA~~Yg-------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 106 (328)
..++++.|+|+|---+- |+..|. .++..+.++.-. . .+..+.-+|.. .-....+.+
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va---~---ag~~iLqst~d---~~egaa~L~ 254 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVA---R---AGGRILQSTHD---RDEGAAALE 254 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHH---H---hcCceeEeecc---ccchHHHHH
Confidence 56788999999876666 677775 466667666543 1 24455555543 122456777
Q ss_pred HHHHHHHHhC-CCceeEEEeecCC
Q 020299 107 ALQKSLENLQ-LEYIDLYVIHWPV 129 (328)
Q Consensus 107 ~l~~sL~~Lg-~d~iDl~~lH~p~ 129 (328)
.++++-+.-+ ...+-+.+.|.-+
T Consensus 255 ~l~~a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 255 ALLEASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHHHHHhcCcccCceEEEecccc
Confidence 7777777773 3457888888653
No 177
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.90 E-value=5.7e+02 Score=25.49 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCcc
Q 020299 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (328)
Q Consensus 63 YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 142 (328)
+|+++.|-++|++..+.- +.+-++|.|-+ .++-+-..++...++++.+ +.++.++.|.......
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC-----~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~------- 130 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSC-----TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKEN------- 130 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCc-----HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccc-------
Confidence 457777778887753322 22334565553 2333444444444555543 5788888875432100
Q ss_pred CCCCCccHHHHHHHHHH--------HHHcCCcceEEecCC------ChhHHHHHHHhCCCCC
Q 020299 143 EDFLPMDFKSVWEAMEE--------CQNLGYTKAIGVSNF------SCKKLGDILATAKIPP 190 (328)
Q Consensus 143 ~~~~~~~~~~~~~~L~~--------l~~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~ 190 (328)
.-.+..+..+++.+.. -.+.++|--||.++. +...+.++++..++++
T Consensus 131 -~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 131 -WAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred -hHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 0000112222222221 012356888888642 3466788888877664
No 178
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=29.84 E-value=3.8e+02 Score=25.65 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCcc-eEEecCCChhHHHHHHHhCCCCCeeeccccCcc---cccHHHHHHHHHcCCeEEEeccC
Q 020299 154 WEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPL---WQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 154 ~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
++.+.+|++.-.+. ..|=|.++...+..+++...+ +++|....-. ..-.++.++|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 56777888876666 667778889999999887544 4666655443 22368899999999999887554
No 179
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=29.68 E-value=79 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCCCCCCeEEcCCCCcccccceeeCCc
Q 020299 7 MGSISIPDVPLKSSNRRMPVLGLGTAA 33 (328)
Q Consensus 7 m~~~~~~~~~L~~~~~~vs~lglG~~~ 33 (328)
.+......+.|+.+|++||.+-+|+..
T Consensus 10 qalPfs~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 10 QALPFSLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred hhCCccccccccccccCCceeeecchH
Confidence 344455667888888999999998876
No 180
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=29.68 E-value=5.3e+02 Score=25.08 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred EEEeecCCCCCCCCCCCCCcc---C-CCCCccHHHHHHHHHHHHHc----CCcceEEec-----CCChhHHHHHHHhCC-
Q 020299 122 LYVIHWPVSSKPGSYEFPIKK---E-DFLPMDFKSVWEAMEECQNL----GYTKAIGVS-----NFSCKKLGDILATAK- 187 (328)
Q Consensus 122 l~~lH~p~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~L~~l~~~----Gkir~iGvS-----~~~~~~l~~~~~~~~- 187 (328)
-+++|-|-.......+..... . .......+.+.+.++.+.+. -.|+.|=+. -.+++++.++++...
T Consensus 51 ~LYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~ 130 (453)
T PRK09249 51 SLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLRE 130 (453)
T ss_pred EEEEEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHH
Confidence 478998865444333321111 0 10001133445555544432 246666432 234677777766542
Q ss_pred ---CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhC
Q 020299 188 ---IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQ 263 (328)
Q Consensus 188 ---~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~ 263 (328)
+.+ .-+-++.|+-.-..+.++..++.|+.-+..+.-.. ..+.++.+.+.+......-+++.+...
T Consensus 131 ~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~-----------~~~~L~~l~r~~~~~~~~~ai~~l~~~ 199 (453)
T PRK09249 131 HFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF-----------DPEVQKAVNRIQPFEFTFALVEAAREL 199 (453)
T ss_pred hCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC-----------CHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 111 12344556544457899999999988777665532 233444443333222233345555544
Q ss_pred C-----cEEeeC--CCCHHHHHHhhcc
Q 020299 264 G-----VCVVVK--SFNKERMKENLDI 283 (328)
Q Consensus 264 ~-----~~vi~g--~~~~~~l~enl~a 283 (328)
| +..+.| ..|.+++++.++.
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~~l~~ 226 (453)
T PRK09249 200 GFTSINIDLIYGLPKQTPESFARTLEK 226 (453)
T ss_pred CCCcEEEEEEccCCCCCHHHHHHHHHH
Confidence 3 123444 2455666555543
No 181
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=29.56 E-value=2e+02 Score=24.71 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCC--cEEeeCCC--CHHHHHH
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQG--VCVVVKSF--NKERMKE 279 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vi~g~~--~~~~l~e 279 (328)
.+..++.+++++.++.+.|--- -|-.++||+|++.++ ..++.|+. ..+|.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~eKD------------------------~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~la 105 (203)
T TIGR01378 50 EEELDFYKKAGVKIIVFPPEKD------------------------TTDLELALKYALERGADEITILGATGGRLDHTLA 105 (203)
T ss_pred HHHHHHHHHcCCceEEcCCCCC------------------------CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHH
Confidence 5677788888888777655421 356888999999886 56777764 7799999
Q ss_pred hhccc
Q 020299 280 NLDIF 284 (328)
Q Consensus 280 nl~a~ 284 (328)
|+..+
T Consensus 106 ni~~L 110 (203)
T TIGR01378 106 NLNLL 110 (203)
T ss_pred HHHHH
Confidence 98765
No 182
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=29.12 E-value=4.8e+02 Score=24.41 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=76.6
Q ss_pred EEeecCCCCCCCCCCCCCccCCCC---CccHHHHHHHHHHH-HHcC--CcceEEecC-----CChhHHHHHHH----hCC
Q 020299 123 YVIHWPVSSKPGSYEFPIKKEDFL---PMDFKSVWEAMEEC-QNLG--YTKAIGVSN-----FSCKKLGDILA----TAK 187 (328)
Q Consensus 123 ~~lH~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~l-~~~G--kir~iGvS~-----~~~~~l~~~~~----~~~ 187 (328)
+++|-|--......++..+..... ..-.....+.++.. ..-| .|+.|=+.. .+++++.++++ ...
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~ 82 (360)
T TIGR00539 3 LYIHIPFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQHAS 82 (360)
T ss_pred EEEEeCCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHhCC
Confidence 788888655444443322111000 00122333344332 2223 355554432 23466666663 332
Q ss_pred CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCC--
Q 020299 188 IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQG-- 264 (328)
Q Consensus 188 ~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~-- 264 (328)
+.. .-+-++.||-.-..+.++..++.|+.-+..+.-.. ..+.++.+.+.+...-..-++.++...+
T Consensus 83 ~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~-----------~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 83 LSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSF-----------RDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred CCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC-----------ChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 221 23445566655568889999999988777665543 3445555533333333444666766655
Q ss_pred -cEE--eeCC--CCHHHHHHhhcc
Q 020299 265 -VCV--VVKS--FNKERMKENLDI 283 (328)
Q Consensus 265 -~~v--i~g~--~~~~~l~enl~a 283 (328)
+.+ +.|. .|.+.+.+.++.
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 152 NISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred eEEEeccCCCCCCCHHHHHHHHHH
Confidence 222 5564 566777666653
No 183
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.98 E-value=2.8e+02 Score=22.12 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=42.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC--CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
.|=-+.|+-|.......+..+++.+.++.+... ..-.|++++-.+.... .+..++.+.|..|.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~---------------~~~~~l~~~l~~ll 110 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGE---------------LENPELHQQFGKLW 110 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCccc---------------CCHHHHHHHHHHHH
Confidence 455566666644444567888888888887654 2457999998775432 34667777776665
Q ss_pred Hc
Q 020299 162 NL 163 (328)
Q Consensus 162 ~~ 163 (328)
+.
T Consensus 111 ~k 112 (130)
T PRK00396 111 KR 112 (130)
T ss_pred HH
Confidence 43
No 184
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.65 E-value=2.8e+02 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCC
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIP 189 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~ 189 (328)
-.++.+-+++++++| |+-+=+||-+...+..+.+..+++
T Consensus 48 tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 48 TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhhcCCc
Confidence 457788899999998 567778998888887776655443
No 185
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=28.53 E-value=2.5e+02 Score=24.60 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL 112 (328)
.++++..++.+.+.+.|..|+=|+..|+ +.+.+....+.. +.+ +--|....=.+.++..+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~--------~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV--------GPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh--------CCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 5678889999999999999999999985 444443333322 222 23344333345677777777766
Q ss_pred HHhCCCc
Q 020299 113 ENLQLEY 119 (328)
Q Consensus 113 ~~Lg~d~ 119 (328)
.|+|+.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 6777654
No 186
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.48 E-value=2.6e+02 Score=20.99 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred HHHHHHHc-CCcceEEecCCChhHHHHHHHhCCCC-------------CeeeccccCcccccHHHHHHHHHcCCeEEEec
Q 020299 156 AMEECQNL-GYTKAIGVSNFSCKKLGDILATAKIP-------------PAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 156 ~L~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 221 (328)
.+..+.+. ..+.-+|+++-+++..+.+.+..+++ ++++-+. .+-....+++..|-+.|+.|+.=+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEEc
Confidence 34455555 66777888888877766655544322 1122111 111223678888999999999999
Q ss_pred cCCCCCCCCCCCcccChHHHHHHHHHhCCC
Q 020299 222 PLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 222 pl~~~G~l~~~~~~~~~~~l~~la~~~~~s 251 (328)
|++. .....+++.++++++|+.
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTSC
T ss_pred CCcC--------CHHHHHHHHHHHHHhCCE
Confidence 9975 344567788888887753
No 187
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.44 E-value=78 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ 64 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg 64 (328)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4567788899999999999999999884
No 188
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.27 E-value=5.1e+02 Score=24.36 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=53.8
Q ss_pred ChhHHHHHHHhCC--CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCC
Q 020299 175 SCKKLGDILATAK--IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (328)
Q Consensus 175 ~~~~l~~~~~~~~--~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s 251 (328)
+++++.++++... +.+ .-+-++.||-.-..+.++..++.|+.-+..+.-.. .++.++.+.+.+...
T Consensus 71 ~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~-----------~d~vL~~l~R~~~~~ 139 (353)
T PRK05904 71 NDQLLDILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSM-----------NNNILKQLNRTHTIQ 139 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccC-----------CHHHHHHcCCCCCHH
Confidence 4566777665432 111 12334555544457889999999987776555432 344555555444333
Q ss_pred HHHHHHHHHhhCC-----cEEeeCC--CCHHHHHHhhcc
Q 020299 252 VAQVCLRWAYEQG-----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 252 ~~q~al~~~l~~~-----~~vi~g~--~~~~~l~enl~a 283 (328)
...-+++.+...| +..|.|. .+.+++++.++.
T Consensus 140 ~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 178 (353)
T PRK05904 140 DSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNF 178 (353)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHH
Confidence 3334556665554 2345553 466666666553
No 189
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.23 E-value=3.1e+02 Score=22.74 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=52.7
Q ss_pred CcceEEecCCChhHH------HHHHHhC-CCCCeeeccccCcccc-------c--------HHHHHHHHHcCCeEEEecc
Q 020299 165 YTKAIGVSNFSCKKL------GDILATA-KIPPAANQVEMNPLWQ-------Q--------NKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 165 kir~iGvS~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~l~~~~~~~gi~v~a~~p 222 (328)
.|...|+++.+..++ ...+... +.+.+++++-.|-... . ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 677788888876543 2344332 2344666666554322 1 4688889999999998887
Q ss_pred CCCCCCCCCC--Ccc--cChHHHHHHHHHhCCCH
Q 020299 223 LGARGTIWGS--NRV--MECEVLKEIAEAKGKTV 252 (328)
Q Consensus 223 l~~~G~l~~~--~~~--~~~~~l~~la~~~~~s~ 252 (328)
......-.+. ... .-.+.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6431111110 001 11478889999998753
No 190
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=28.20 E-value=2.1e+02 Score=23.43 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH--cCCcceEEecCCCh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFSC 176 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvS~~~~ 176 (328)
.+.+.+.+.+++-.+.+|++ ++.+|=.. -.++++.+++..+ +|.|-.=|.-+|+.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN~----------------------EGelId~i~~a~~~~dgiIINpga~THtS 82 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSNH----------------------EGELIDWIHEARGDVAGIVINPGAYTHTS 82 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHHhhhcCCEEEEcchHHhhhH
Confidence 35688999999998999964 67666321 3577788887754 36666667778888
Q ss_pred hHHHHHHHhCCCCCeeeccccCcccccH
Q 020299 177 KKLGDILATAKIPPAANQVEMNPLWQQN 204 (328)
Q Consensus 177 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~ 204 (328)
-.+..++.....+ ++.++.+..+.++
T Consensus 83 iAl~DAl~~~~~P--~VEVHiSNi~aRE 108 (146)
T PRK13015 83 VAIRDALAALELP--VIEVHISNVHARE 108 (146)
T ss_pred HHHHHHHHcCCCC--EEEEEcCCccccc
Confidence 8888888887766 6677777665543
No 191
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=28.19 E-value=8.8e+02 Score=27.13 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=59.6
Q ss_pred HHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH-cCCc--ceEEecCCChhHHHHHHHhCCCC
Q 020299 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN-LGYT--KAIGVSNFSCKKLGDILATAKIP 189 (328)
Q Consensus 113 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~Gki--r~iGvS~~~~~~l~~~~~~~~~~ 189 (328)
-.-|.+.||+=.= .+ ..+-++.++.+..+.+ +-.+ --|-+-+++++.++.+++.+.-.
T Consensus 378 ve~GA~iIDVn~~-~~------------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~ 438 (1178)
T TIGR02082 378 VENGAQILDINVD-YG------------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGK 438 (1178)
T ss_pred HHCCCCEEEECCC-CC------------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCC
Confidence 3568899998642 11 1123344444443443 3223 23777788999999999986556
Q ss_pred CeeeccccCccc-ccHHHHHHHHHcCCeEEEeccCCC
Q 020299 190 PAANQVEMNPLW-QQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 190 ~~~~q~~~~~~~-~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+.+|-++.-... +...+++.|+++|..++.+.--..
T Consensus 439 ~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~ 475 (1178)
T TIGR02082 439 CIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEE 475 (1178)
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC
Confidence 777755543221 225799999999999999864333
No 192
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=28.08 E-value=4.9e+02 Score=24.17 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=85.9
Q ss_pred CCCCeEEcCCCCcccccce--eeCC-cCCCCChhHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCC
Q 020299 10 ISIPDVPLKSSNRRMPVLG--LGTA-ASPFSGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIK 83 (328)
Q Consensus 10 ~~~~~~~L~~~~~~vs~lg--lG~~-~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---sE~~lG~al~~~~~~~~~~ 83 (328)
.+++...++.+ ..+..|- |... .|....-.++.+++...++.+-+.|= .|. .-.-++..++..++.|.
T Consensus 9 ~~V~~~~~~~~-~~~~~lv~~~~~~~gF~a~~l~~A~~i~~~ml~d~~~ifL---~~tg~mvs~Glr~ii~~Li~~~~-- 82 (312)
T PRK01221 9 EPVEDIRLDDL-TSISDLIEVYRKIGGFMAGHIVRASEILKEMISDADLRFL---SFTANLVSTGLRGLIADLIKRGL-- 82 (312)
T ss_pred CCCCCCCCCCC-CCHHHHHHHhhccCCcchHHHHHHHHHHHHHHcCCCeEEE---EecchhHHHHHHHHHHHHHHcCC--
Confidence 44555555555 5665542 3332 33222335678888888855534331 222 23447788887766654
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHH------------HHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPAL------------QKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFK 151 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l------------~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 151 (328)
=+++|+|=.... +.+.+++ +.-|++.|+++|-=+++..-+. ...++
T Consensus 83 --VD~iVtTgani~----hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip~e~y----------------~~~~E 140 (312)
T PRK01221 83 --FNVVITTCGTLD----HDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIPVESY----------------GPLIE 140 (312)
T ss_pred --eeEEEeCCCchH----HHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccChHHH----------------HHHHH
Confidence 356777764211 1222222 5677888888876565542110 00123
Q ss_pred HHH-HHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 152 SVW-EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 152 ~~~-~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
+.+ +.++++.+++ ..|++..+-..+-.. + +.+..++..|.++||+|+.-...
T Consensus 141 ~~i~~il~~~~~~~-------~~~s~~e~i~~lGk~-i------------~~e~Sil~~Ay~~~VPVf~Pa~~ 193 (312)
T PRK01221 141 KFVRKFLEELYKDK-------KEWSTYELLWEFGKR-I------------NDENSILRAAYEKGVPVFVPGIV 193 (312)
T ss_pred HHHHHHHHHHHhcC-------CCccHHHHHHHHHhh-c------------CCcCcHHHHHHHcCCCEECCCcc
Confidence 322 2344444333 124555543332110 1 12468999999999999875544
No 193
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.08 E-value=5e+02 Score=24.27 Aligned_cols=138 Identities=11% Similarity=0.115 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l 179 (328)
+++.+.+.+++. ...|..++.+..-+.|+ ...+.+.+.++.++++. -.+-+..+++..+
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~------------------~~~~~~~e~i~~Ik~~~--p~i~i~~~~~~ei 138 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN------------------LPFEWYLDMIRTLKEAY--PDLHVKAFTAVEI 138 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC------------------CCHHHHHHHHHHHHHHC--CCceEEeCCHHHH
Confidence 566776666643 45777777766444442 12556666777777664 2344444555555
Q ss_pred HHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHH--HH
Q 020299 180 GDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV--CL 257 (328)
Q Consensus 180 ~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~--al 257 (328)
..+....+. ..++.+...++.|+..+... |. .....+.+..++.. +.+..+. ++
T Consensus 139 ~~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i 194 (351)
T TIGR03700 139 HHFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----GA-----EIFAEEVRQQICPE-KISAERWLEIH 194 (351)
T ss_pred HHHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----cc-----cccCHHHHhhcCCC-CCCHHHHHHHH
Confidence 444332211 23566777777777654421 11 12223344444433 2344442 67
Q ss_pred HHHhhCC----cEEeeCCC-CHHHHHHhhc
Q 020299 258 RWAYEQG----VCVVVKSF-NKERMKENLD 282 (328)
Q Consensus 258 ~~~l~~~----~~vi~g~~-~~~~l~enl~ 282 (328)
+++...| +..++|.- ++++..+.+.
T Consensus 195 ~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~ 224 (351)
T TIGR03700 195 RTAHELGLKTNATMLYGHIETPAHRVDHML 224 (351)
T ss_pred HHHHHcCCCcceEEEeeCCCCHHHHHHHHH
Confidence 7777766 45677764 4444444443
No 194
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.88 E-value=3.6e+02 Score=24.70 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCC
Q 020299 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (328)
Q Consensus 108 l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 187 (328)
+++.|..+.-+|.|++++..- ..+.+.+.++.+.+.|+--=+|.+.|+.+++.++.+...
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT--------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~ 127 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT--------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESG 127 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC--------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCC
Confidence 345554554468897777643 256788899999999999999999999999988876434
Q ss_pred CCCeeeccccCc
Q 020299 188 IPPAANQVEMNP 199 (328)
Q Consensus 188 ~~~~~~q~~~~~ 199 (328)
+ |.++--+|++
T Consensus 128 i-~vv~apNfSi 138 (286)
T PLN02775 128 V-YAVIAPQMGK 138 (286)
T ss_pred c-cEEEECcccH
Confidence 4 4455445554
No 195
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=27.85 E-value=4.9e+02 Score=24.01 Aligned_cols=184 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred cEEEEeccCCCCCChhhHHHHHHHHHHHhC-CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q 020299 87 ELFIASKLWCSDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (328)
Q Consensus 87 ~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 165 (328)
++|.+.-+......+......+-+.+..++ +..+-+.. +|+..++ +.|+.+++.|.
T Consensus 72 kif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--rpd~i~~---------------------e~L~~l~~aG~ 128 (313)
T TIGR01210 72 KIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--RPEFIDE---------------------EKLEELRKIGV 128 (313)
T ss_pred EEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--CCCcCCH---------------------HHHHHHHHcCC
Q ss_pred -c-ceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHH
Q 020299 166 -T-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKE 243 (328)
Q Consensus 166 -i-r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ 243 (328)
+ -++|+=+++...+...+...-..-.+. +.+..++++|+.+.++--++. ..++............+
T Consensus 129 ~~~v~iG~ES~~d~~L~~~inKg~t~~~~~-----------~ai~~~~~~Gi~v~~~~i~G~-P~~se~ea~ed~~~ti~ 196 (313)
T TIGR01210 129 NVEVAVGLETANDRIREKSINKGSTFEDFI-----------RAAELARKYGAGVKAYLLFKP-PFLSEKEAIADMISSIR 196 (313)
T ss_pred CEEEEEecCcCCHHHHHHhhCCCCCHHHHH-----------HHHHHHHHcCCcEEEEEEecC-CCCChhhhHHHHHHHHH
Q ss_pred HHHHhCCCHHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccCCcCC-----HHHHHHhhcCCCCCCccCcccccCCCCc
Q 020299 244 IAEAKGKTVAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFNWELT-----DEETKKISDIPQSRGCLGEDYISANGPI 317 (328)
Q Consensus 244 la~~~~~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (328)
.+.+++ . .+--++..+.+|+ -+.+..+.-.+.++ -+-++++.+.......++..+.+.++|+
T Consensus 197 ~~~~l~-~-------~vs~~~l~v~~gT----~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~~~~d~~g~~~~rg~~ 263 (313)
T TIGR01210 197 KCIPVT-D-------TVSINPTNVQKGT----LVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAEVLSDPVGAGSDRGAH 263 (313)
T ss_pred HHHhcC-C-------cEEEECCEEeCCC----HHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCeEEecCCCCCCcCCCc
No 196
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=27.78 E-value=2.3e+02 Score=28.51 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCe
Q 020299 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPA 191 (328)
Q Consensus 148 ~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 191 (328)
.+..++.+.+.+.++..+|+.+|+-.+...++..+++..+++++
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv 453 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVV 453 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCcee
Confidence 45778888899999999999999999999999888888887743
No 197
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.73 E-value=3.8e+02 Score=22.76 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHcC-CcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcC
Q 020299 158 EECQNLG-YTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKD 214 (328)
Q Consensus 158 ~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~g 214 (328)
.-|+..| .+.++| .+-+.+.+.+.+... +|+++.+++...... .++++.+++.+
T Consensus 104 ~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 104 TMLEANGFEVIDLG-RDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred HHHHHCCCEEEECC-CCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 3455566 456667 445566666555544 455665565433332 56777777774
No 198
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.37 E-value=3.6e+02 Score=25.40 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHHcC----CcceEEecC--CChhHHHHHHHhCC-CCCeeeccccCcccc------c----HHHHHHH
Q 020299 148 MDFKSVWEAMEECQNLG----YTKAIGVSN--FSCKKLGDILATAK-IPPAANQVEMNPLWQ------Q----NKLREFC 210 (328)
Q Consensus 148 ~~~~~~~~~L~~l~~~G----kir~iGvS~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~l~~~~ 210 (328)
..++++++++.++.+.+ +++++=+.+ -+.+.+.++.+... .+..++-++||+... . ..+....
T Consensus 231 ~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 231 YPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34788888888877654 234555543 44577766666554 344677788988642 1 4567778
Q ss_pred HHcCCeEEEeccCCC
Q 020299 211 KAKDIQLAAYAPLGA 225 (328)
Q Consensus 211 ~~~gi~v~a~~pl~~ 225 (328)
+++||.+......|.
T Consensus 311 ~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 311 LDKHVTVITRSSRGS 325 (349)
T ss_pred HHCCceEEEeCCCCc
Confidence 899999999888754
No 199
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.26 E-value=5.2e+02 Score=24.17 Aligned_cols=111 Identities=13% Similarity=0.033 Sum_probs=53.8
Q ss_pred CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecC---
Q 020299 97 SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN--- 173 (328)
Q Consensus 97 ~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~--- 173 (328)
..++.+.+. .+-+.|.+.|+++|.+-+.-...... +... .......+.++++.... ...+...+..
T Consensus 20 ~~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s-----~~~g---~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~ 88 (337)
T PRK08195 20 HQYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSS-----FNYG---FGAHTDEEYIEAAAEVV--KQAKIAALLLPGI 88 (337)
T ss_pred CccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcc-----ccCC---CCCCCHHHHHHHHHHhC--CCCEEEEEeccCc
Confidence 345555554 44555999999999987432111000 0000 00111233333333222 3345444332
Q ss_pred CChhHHHHHHHhCCCCCeeeccccC--cccccHHHHHHHHHcCCeEEEec
Q 020299 174 FSCKKLGDILATAKIPPAANQVEMN--PLWQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~~~l~~~~~~~gi~v~a~~ 221 (328)
.+.+.++.+.+. +++ .+.+..+ -...-.+.+++++++|..+...-
T Consensus 89 ~~~~dl~~a~~~-gvd--~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 89 GTVDDLKMAYDA-GVR--VVRVATHCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred ccHHHHHHHHHc-CCC--EEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 245666666654 333 3333322 22222678888999998776643
No 200
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.15 E-value=5.1e+02 Score=24.00 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 163 (328)
.++.+.++.|.....+ ...+.+.+++..+++|. ++.+ ..|... +.....+.++.+..+
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~-----------------d~~~q~~~i~~li~~ 79 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTEP-----------------SVSGQVQLINNFVNQ 79 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCCC-----------------CHHHHHHHHHHHHHc
Confidence 5778989999754333 36788999999999993 4443 333211 245667888899887
Q ss_pred CCcceEEecCCChhHHHHH
Q 020299 164 GYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~ 182 (328)
| +..|-++..++..+...
T Consensus 80 ~-vdgIiv~~~d~~al~~~ 97 (336)
T PRK15408 80 G-YNAIIVSAVSPDGLCPA 97 (336)
T ss_pred C-CCEEEEecCCHHHHHHH
Confidence 5 88898887775543333
No 201
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=27.08 E-value=5.6e+02 Score=24.49 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=66.2
Q ss_pred CCCCccHHHHHHHHHHHHHcCCcceEEecC-----CC-----hhHHHHHHHhCC-CCC--eeeccccCcccccHHHHHHH
Q 020299 144 DFLPMDFKSVWEAMEECQNLGYTKAIGVSN-----FS-----CKKLGDILATAK-IPP--AANQVEMNPLWQQNKLREFC 210 (328)
Q Consensus 144 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-----~~-----~~~l~~~~~~~~-~~~--~~~q~~~~~~~~~~~l~~~~ 210 (328)
.+.....+++++.++.+++.| ++.|-+.. +. ...+.++++... .+. .+.....++-.-..++++..
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m 241 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAI 241 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHH
Confidence 344567999999999999987 56665432 21 123444443321 111 11111222322347888888
Q ss_pred HHcC-CeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhh--CC----cEEeeCC--CCHHHHHHhh
Q 020299 211 KAKD-IQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYE--QG----VCVVVKS--FNKERMKENL 281 (328)
Q Consensus 211 ~~~g-i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~--~~----~~vi~g~--~~~~~l~enl 281 (328)
++.+ +-...+-++-. ...+.++.+.+.+......-+++.+.+ .+ ...|+|. .+.+.+++.+
T Consensus 242 ~~~~~~~~~l~lglES----------gs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl 311 (414)
T TIGR01579 242 ASEKRLCPHLHLSLQS----------GSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETL 311 (414)
T ss_pred HhcCccCCCeEECCCc----------CChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHH
Confidence 8754 21112222222 123445554444433333335555555 33 3467773 6778887777
Q ss_pred ccc
Q 020299 282 DIF 284 (328)
Q Consensus 282 ~a~ 284 (328)
+-+
T Consensus 312 ~~i 314 (414)
T TIGR01579 312 RMV 314 (414)
T ss_pred HHH
Confidence 643
No 202
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=26.91 E-value=1.1e+02 Score=28.30 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~ 180 (328)
.+.+++.+.+-+++.|+|++=++.+-.-....+. . ....+.+++|++..+++.-. .++..+.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~------~------~~~~~t~~~l~~al~~~~~~------~~aS~~Y 192 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPV------I------PGVHDTLEALEKALDENDPE------ISASMLY 192 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---------C------CCCCSSHHHHHHHHHTT-TT------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCC------C------ccccCCHHHHHHHhhcCCCc------CChHHHH
Confidence 4678889999999999886544433322111110 0 01224567788877765322 1122222
Q ss_pred HHHHh-CCCCCeeeccccCccc--ccHHHHHHHHHcCCeEEEe---ccCCCCCCCCCCCcccChHHHHHHHHHhCCCHHH
Q 020299 181 DILAT-AKIPPAANQVEMNPLW--QQNKLREFCKAKDIQLAAY---APLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQ 254 (328)
Q Consensus 181 ~~~~~-~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~v~a~---~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q 254 (328)
..... .++. + +++.|-. ....+.+.++++|+.+..- ++++. ++ +++.-++.++|.+.|....+
T Consensus 193 A~AAl~~g~~--f--vN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAA-pl------vlDLirl~~la~r~g~~Gv~ 261 (295)
T PF07994_consen 193 AYAALEAGVP--F--VNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAA-PL------VLDLIRLAKLALRRGMGGVQ 261 (295)
T ss_dssp HHHHHHTTEE--E--EE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHH-HH------HHHHHHHHHHHHHTTS-EEH
T ss_pred HHHHHHCCCC--e--EeccCccccCCHHHHHHHHHcCCCeecchHhhhhhh-HH------HHHHHHHHHHHHHcCCCChh
Confidence 11111 2221 2 2333332 2378999999999998752 23333 22 34567899999999998899
Q ss_pred HHHHHHhhCCcEEeeCCCCHHHH
Q 020299 255 VCLRWAYEQGVCVVVKSFNKERM 277 (328)
Q Consensus 255 ~al~~~l~~~~~vi~g~~~~~~l 277 (328)
-.++|....|. +=+|......+
T Consensus 262 ~~ls~ffK~P~-~~~g~~~~~~l 283 (295)
T PF07994_consen 262 EWLSFFFKSPM-VPPGPPQEHDL 283 (295)
T ss_dssp HHHHHHBSS-T---TTSTT--HH
T ss_pred HHHHHHhcCCC-ccCCCCCCCcH
Confidence 99999998885 23444444333
No 203
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=26.86 E-value=1.9e+02 Score=23.49 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH--cCCcceEEecCCCh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFSC 176 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvS~~~~ 176 (328)
.+.+.+.+.+.+--+.+|++ ++++|=.. -.++++.+++..+ +|.|-.=|.-+|+.
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~-v~~~QSN~----------------------Egelid~I~~a~~~~dgiIINpga~THtS 80 (140)
T cd00466 24 TTLADIEALLRELAAELGVE-VEFFQSNH----------------------EGELIDWIHEARDGADGIIINPGAYTHTS 80 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc----------------------HHHHHHHHHHhhccCcEEEEcchHHHHHH
Confidence 35688999999988889974 77776321 3577788888754 46666667778888
Q ss_pred hHHHHHHHhCCCCCeeeccccCcccccH
Q 020299 177 KKLGDILATAKIPPAANQVEMNPLWQQN 204 (328)
Q Consensus 177 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~ 204 (328)
-.+..++....++ ++.+..+..+.++
T Consensus 81 vAi~DAl~~~~~P--~VEVHiSNi~aRE 106 (140)
T cd00466 81 IALRDALAAVSIP--VIEVHISNIHARE 106 (140)
T ss_pred HHHHHHHHcCCCC--EEEEecCCccccc
Confidence 8888888887766 6677777665543
No 204
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.86 E-value=5.4e+02 Score=24.21 Aligned_cols=176 Identities=11% Similarity=0.097 Sum_probs=95.1
Q ss_pred CChhHHHHHHHHHHH---cCCCeEeCCCCCC----ChHHHHHHHHHHHhc-CCCCCCCcEEEEeccCCCCCChhhHHHHH
Q 020299 37 SGSETTKLAILEAMK---LGYRHFDTATLYQ----TEQPLGDAIAEALST-GIIKSRDELFIASKLWCSDAHRELVVPAL 108 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~---~Gin~~DTA~~Yg----sE~~lG~al~~~~~~-~~~~~R~~~~I~tK~~~~~~~~~~i~~~l 108 (328)
.+.++..+.+..+.+ .+++.+= =-..| +-..+-++++..... |+ ....+.|+|= +. ...+++-.
T Consensus 129 lt~~EIv~qv~~~~~~~~~~~~~Iv-fmGmGEPlln~~~v~~~i~~l~~~~~i--~~r~itvST~-G~----~~~i~~L~ 200 (345)
T PRK14457 129 LKAHEIVDQVLTVQEDMQRRVSHVV-FMGMGEPLLNIDEVLAAIRCLNQDLGI--GQRRITVSTV-GV----PKTIPQLA 200 (345)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCEEE-EEecCccccCHHHHHHHHHHHhcccCC--ccCceEEECC-Cc----hhhHHHHH
Confidence 455665555555432 2333321 01223 455566777765221 44 3446777773 21 23344444
Q ss_pred HHHHHHhC-CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHH-HHHcC---CcceEEecCCC--hhHHHH
Q 020299 109 QKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE-CQNLG---YTKAIGVSNFS--CKKLGD 181 (328)
Q Consensus 109 ~~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~~G---kir~iGvS~~~--~~~l~~ 181 (328)
+.-+++|| .+....+-||.++........ +. .....++++++++.+ +.+.| .|+++=+.+++ .+.+++
T Consensus 201 ~~~~~~~~~~~~~laiSLha~~~e~r~~i~-p~----~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 201 ELAFQRLGRLQFTLAVSLHAPNQKLRETLI-PS----AKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred hhhhhhcccCceEEEEEeCCCCHHHHHHhc-CC----ccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 44344443 344577889988654321110 00 011347788877766 44555 35566555444 566666
Q ss_pred HHHhCC-CCCeeeccccCccccc----------HHHHHHHHHcCCeEEEeccCCC
Q 020299 182 ILATAK-IPPAANQVEMNPLWQQ----------NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 182 ~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+.+..+ ++..++-++||++... ..+.+..+++|+.+......|.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 655443 3456888889886421 3466678888999988877754
No 205
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.49 E-value=3.4e+02 Score=24.22 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC------CChhhHHHHHHH
Q 020299 39 SETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD------AHRELVVPALQK 110 (328)
Q Consensus 39 ~~~~~~~l~~A~~~Gin~~DTA~~Yg--sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~------~~~~~i~~~l~~ 110 (328)
+....+.++.+-+.|++++..++.+- ++...-++++.. ....+.+.|-++..+ .+++...+.+++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 44567788888999999999999876 677777888876 566688888887543 235666777777
Q ss_pred HHHHhCCCceeEEEeec
Q 020299 111 SLENLQLEYIDLYVIHW 127 (328)
Q Consensus 111 sL~~Lg~d~iDl~~lH~ 127 (328)
-|+. | .|.+++..
T Consensus 156 dLeA-G---A~~ViiEa 168 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEA 168 (244)
T ss_dssp HHHH-T---ECEEEE--
T ss_pred HHHC-C---CCEEEEee
Confidence 6665 5 56677764
No 206
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.42 E-value=99 Score=28.65 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCeE-EEeccCCCCCCCCCCCcccChHHHHHHHHHhC---CCHHHHHHHHHhhCCcEEeeCCCCHHHHHH
Q 020299 204 NKLREFCKAKDIQL-AAYAPLGARGTIWGSNRVMECEVLKEIAEAKG---KTVAQVCLRWAYEQGVCVVVKSFNKERMKE 279 (328)
Q Consensus 204 ~~l~~~~~~~gi~v-~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~---~s~~q~al~~~l~~~~~vi~g~~~~~~l~e 279 (328)
.+|.++|.+.|+.| ++|-|-+. .+++..+.+.+..|..... .+..++++.|+-+-- .--|-.-..+|.+
T Consensus 204 ~~L~~la~~~gl~I~v~hyPP~t-----SKwN~IEHRlfs~is~~w~G~pl~S~e~vv~lIa~T~--T~tGL~v~a~Ld~ 276 (311)
T PF07592_consen 204 KRLQELADETGLSIRVCHYPPGT-----SKWNPIEHRLFSHISRNWRGRPLTSHEVVVNLIAATT--TWTGLNVTAELDT 276 (311)
T ss_pred HHHHHHHHHhCCEEEEEEcCCCc-----ccccchhhhHhHhhhhhcCCCcCCCHHHHHHHHHhhc--ccCCceEEEEEcC
Confidence 68999999999988 67777653 3455555566666666553 366788888865421 1111111123444
Q ss_pred hhcccCCcCCHHHHHHhhcCCCCCCccCcccccC
Q 020299 280 NLDIFNWELTDEETKKISDIPQSRGCLGEDYISA 313 (328)
Q Consensus 280 nl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~~~~ 313 (328)
+.-.....+++++++.|. .....++|+..|.=
T Consensus 277 ~~Y~~Gikvs~~em~~l~--i~r~~~~g~WNYtI 308 (311)
T PF07592_consen 277 KTYETGIKVSDEEMKALN--IERDPFHGKWNYTI 308 (311)
T ss_pred CcCCCCcEeCHHHHhhcc--ceecccCCCCeeEe
Confidence 444445699999999998 45667888877653
No 207
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.38 E-value=6e+02 Score=24.58 Aligned_cols=117 Identities=8% Similarity=0.108 Sum_probs=59.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCC-CceeEEEeecCCCCCCCCCC
Q 020299 59 TATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL-EYIDLYVIHWPVSSKPGSYE 137 (328)
Q Consensus 59 TA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~-d~iDl~~lH~p~~~~~~~~~ 137 (328)
..-.||.++.|-++|++..+.. +.+=++|.|-.-. ..--+.+..-+++.-++... ..+.++.++.|..... .
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~-~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs--~- 135 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMA-EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS--H- 135 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchH-hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccC--H-
Confidence 3457788888899998764432 3444666665422 11123444444433233311 1368888887754311 0
Q ss_pred CCCccCCCCCccHHHHHHHHH-HHH-------HcCCcceEE-ecCC-C-hhHHHHHHHhCCCCCe
Q 020299 138 FPIKKEDFLPMDFKSVWEAME-ECQ-------NLGYTKAIG-VSNF-S-CKKLGDILATAKIPPA 191 (328)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~L~-~l~-------~~Gkir~iG-vS~~-~-~~~l~~~~~~~~~~~~ 191 (328)
....+.++++|- .+. +.++|--|| ..+. + .+.+.++++..++++.
T Consensus 136 ---------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 ---------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 011233333333 222 233465665 2222 2 5678888888877653
No 208
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=3.8e+02 Score=22.23 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccc-------cHHHHHHHHHcCCeEEEecc
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ-------QNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~l~~~~~~~gi~v~a~~p 222 (328)
-+++++..-+=-++.-|++|=|.+-+.....++++...-+..++-+.|+..+. +.++-+..++.|..|+.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 34555544444456679999998888777777777665443344455554443 26888999999999987664
Q ss_pred CCCCCCCCCCCcccChHHHHHHHHHhC-CCHHHH---HHHHHhhCC
Q 020299 223 LGARGTIWGSNRVMECEVLKEIAEAKG-KTVAQV---CLRWAYEQG 264 (328)
Q Consensus 223 l~~~G~l~~~~~~~~~~~l~~la~~~~-~s~~q~---al~~~l~~~ 264 (328)
.-. |.- +.|.+++| .+|.++ .|| ..++|
T Consensus 92 alS-g~e------------Rsis~kfGG~~p~eiiAetLR-~fg~G 123 (186)
T COG1751 92 ALS-GVE------------RSISRKFGGYSPLEIIAETLR-MFGQG 123 (186)
T ss_pred hhh-cch------------hhhhhhcCCcchHHHHHHHHH-HhcCC
Confidence 433 321 23445553 566655 455 55666
No 209
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.14 E-value=3.2e+02 Score=28.43 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc--CCcceEEecCCChh
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYTKAIGVSNFSCK 177 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvS~~~~~ 177 (328)
+-+.+++-++.....-.....-+++|+..+.. .....++|.+..++ +.+.+|.+++....
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------------s~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------------CHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 34666666665443333345568888766432 23556677777766 89999999987766
Q ss_pred HHHHHHHhC
Q 020299 178 KLGDILATA 186 (328)
Q Consensus 178 ~l~~~~~~~ 186 (328)
.+..++..|
T Consensus 167 LlpTIrSRC 175 (700)
T PRK12323 167 IPVTVLSRC 175 (700)
T ss_pred hhhHHHHHH
Confidence 665555443
No 210
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.08 E-value=4.4e+02 Score=25.59 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCeEeCCCCCC----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 020299 44 LAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEY 119 (328)
Q Consensus 44 ~~l~~A~~~Gin~~DTA~~Yg----sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~ 119 (328)
..+.+++++|- +-+.-.|| --..|.+.|... ...+|.-.+-+ ..+-+.+++.++++.+.++..+
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~-------~~~~f~~~sAv---~~gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGT-------TNAAFEALSAV---TSGVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHh-------hCCceEEeccc---cccHHHHHHHHHHHHHHHhcCC
Confidence 57788888763 22334787 467788888765 23333322222 3445899999999988887555
Q ss_pred eeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh
Q 020299 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (328)
Q Consensus 120 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 177 (328)
=-+++|...-+. ....-++|.-.++.|.|-.||.++-+|.
T Consensus 105 ~tiLflDEIHRf------------------nK~QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 105 RTILFLDEIHRF------------------NKAQQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred ceEEEEehhhhc------------------ChhhhhhhhhhhcCCeEEEEeccCCCCC
Confidence 556666432111 1234478888999999999999987753
No 211
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=26.00 E-value=1.9e+02 Score=23.47 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=57.6
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH--cCCcceEEecCCCh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFSC 176 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvS~~~~ 176 (328)
.+-+.+.+.+++--+.+|++ ++.+|=. .-.++++.+.+..+ +|.|-.=|.-+|+.
T Consensus 24 ~tl~di~~~~~~~a~~~g~~-v~~~QSN----------------------~EGelId~i~~a~~~~dgiIINpga~THtS 80 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVE-LEFFQSN----------------------SEGQLIDKIHEAEGQYDGIIINPGALTHTS 80 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC----------------------cHHHHHHHHHhccccCCEEEEcChHHhhhH
Confidence 35688999999998999964 6766632 14577788888754 36666667778888
Q ss_pred hHHHHHHHhCCCCCeeeccccCcccccH
Q 020299 177 KKLGDILATAKIPPAANQVEMNPLWQQN 204 (328)
Q Consensus 177 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~ 204 (328)
-.+..++.....+ ++.+..+..+.++
T Consensus 81 iAl~DAl~~~~~P--~vEVHiSNi~aRE 106 (141)
T TIGR01088 81 VALRDALAAVSLP--VVEVHLSNVHARE 106 (141)
T ss_pred HHHHHHHHcCCCC--EEEEEcCCccccc
Confidence 8888888877766 6677777665543
No 212
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.93 E-value=4.3e+02 Score=22.81 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecC-CChhH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN-FSCKK 178 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-~~~~~ 178 (328)
+++... .+-+.|-+-|+..+.+=+ +.| ...+.+++++++..=-.||..+ .+.++
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~-~t~-----------------------~a~~~i~~l~~~~~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL-RTP-----------------------VALDAIRLLRKEVPDALIGAGTVLNPEQ 72 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC-CCc-----------------------cHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 344443 344566677877776544 222 3455666666654335688876 45888
Q ss_pred HHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEE
Q 020299 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 219 (328)
++.+++.. .++. .+|.. +.+++++|+++||.++.
T Consensus 73 a~~a~~aG-A~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 73 LRQAVDAG-AQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHcC-CCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 88888754 3322 23322 47999999999998876
No 213
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.84 E-value=5e+02 Score=24.45 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred CCCCCCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCCe--EeCCCCCCChHHHHHHHHHHHhcCCCCCC
Q 020299 8 GSISIPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRH--FDTATLYQTEQPLGDAIAEALSTGIIKSR 85 (328)
Q Consensus 8 ~~~~~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~--~DTA~~YgsE~~lG~al~~~~~~~~~~~R 85 (328)
.++.++...++.| -.|-.+|+|+.. .-.++.|...|.+. ||++ +.-+-.+ ++. |
T Consensus 155 ~y~alk~~~~~pG-~~V~I~G~GGlG---------h~avQ~Aka~ga~Via~~~~-----~~K~e~a-~~l---G----- 210 (339)
T COG1064 155 TYRALKKANVKPG-KWVAVVGAGGLG---------HMAVQYAKAMGAEVIAITRS-----EEKLELA-KKL---G----- 210 (339)
T ss_pred EeeehhhcCCCCC-CEEEEECCcHHH---------HHHHHHHHHcCCeEEEEeCC-----hHHHHHH-HHh---C-----
Confidence 3444555556666 778778888443 45677777777553 3433 3333222 222 2
Q ss_pred CcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q 020299 86 DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (328)
Q Consensus 86 ~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 165 (328)
-+.+|.++ .. ...+.+.+. +|+.+.=-+ ...+-.+|..|+..|.
T Consensus 211 Ad~~i~~~-~~------~~~~~~~~~--------~d~ii~tv~---------------------~~~~~~~l~~l~~~G~ 254 (339)
T COG1064 211 ADHVINSS-DS------DALEAVKEI--------ADAIIDTVG---------------------PATLEPSLKALRRGGT 254 (339)
T ss_pred CcEEEEcC-Cc------hhhHHhHhh--------CcEEEECCC---------------------hhhHHHHHHHHhcCCE
Confidence 34566655 11 222333321 676654333 2244478889999999
Q ss_pred cceEEecC-CChhHH--HHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEE
Q 020299 166 TKAIGVSN-FSCKKL--GDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAA 219 (328)
Q Consensus 166 ir~iGvS~-~~~~~l--~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a 219 (328)
+-.+|+-. .....+ ..++- .+. .+.-.+.---.+ .+++++|.+++|....
T Consensus 255 ~v~vG~~~~~~~~~~~~~~li~-~~~---~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i 308 (339)
T COG1064 255 LVLVGLPGGGPIPLLPAFLLIL-KEI---SIVGSLVGTRADLEEALDFAAEGKIKPEI 308 (339)
T ss_pred EEEECCCCCcccCCCCHHHhhh-cCe---EEEEEecCCHHHHHHHHHHHHhCCceeeE
Confidence 99999874 221111 11110 111 111122111112 7899999999997655
No 214
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=25.66 E-value=4.3e+02 Score=24.59 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHcCCcceEEecC-----CChhHHHHHHHhCCCC-Ceeecccc----------CcccccHHHHHHHH
Q 020299 148 MDFKSVWEAMEECQNLGYTKAIGVSN-----FSCKKLGDILATAKIP-PAANQVEM----------NPLWQQNKLREFCK 211 (328)
Q Consensus 148 ~~~~~~~~~L~~l~~~Gkir~iGvS~-----~~~~~l~~~~~~~~~~-~~~~q~~~----------~~~~~~~~l~~~~~ 211 (328)
++.+++.+.++.+++.| ++.|.+.+ ...+.+.++++..+-. |.+.-.-+ +......+.++..+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56899999999999997 66777662 2233333443333211 11100001 11122367888888
Q ss_pred HcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCHH--HHHHHHHhhCC----cEEeeCC-CCHHHHHHhhcc
Q 020299 212 AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVA--QVCLRWAYEQG----VCVVVKS-FNKERMKENLDI 283 (328)
Q Consensus 212 ~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~~--q~al~~~l~~~----~~vi~g~-~~~~~l~enl~a 283 (328)
+.|+.-+. .. | ...+..+..+.++.. +.+.. --+++++...| +..++|. .+.+++.+.+..
T Consensus 149 eAGl~~i~----~~-~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~ 216 (343)
T TIGR03551 149 EAGLDSMP----GT-A-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLI 216 (343)
T ss_pred HhCccccc----Cc-c-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHH
Confidence 88876543 11 1 122233333334321 12222 22566666665 4667774 566777776654
No 215
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=25.55 E-value=1.5e+02 Score=26.04 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHcCCcceEEe----cCCChhHHHHHHHhCCCCCeeeccccCccccc--HHHHHHHHHcCCeEEEecc
Q 020299 149 DFKSVWEAMEECQNLGYTKAIGV----SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~Gkir~iGv----S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~p 222 (328)
..++..++|..++ +..|.. |.+....++.+.+..+.+ .|.|+++. .+++...-+.|..++.-++
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 3677778888887 445543 344455567776666553 46677664 5666666677766665555
Q ss_pred CCCCCCCC---CCC-cccChHHHHHHHHHhCCCHH
Q 020299 223 LGARGTIW---GSN-RVMECEVLKEIAEAKGKTVA 253 (328)
Q Consensus 223 l~~~G~l~---~~~-~~~~~~~l~~la~~~~~s~~ 253 (328)
-+. |+-. |.. +....+.+..++++||+.|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 554 5431 111 11224778888888888663
No 216
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=25.36 E-value=4.2e+02 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHcCCcceEEecCCChhHHHHHHHhCC
Q 020299 156 AMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (328)
Q Consensus 156 ~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 187 (328)
.++.+++.|....+=+++|+.+.+..+.+...
T Consensus 108 ~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 108 VLEIVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHHHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 33444556777788999999999988877653
No 217
>PLN02389 biotin synthase
Probab=25.25 E-value=6e+02 Score=24.23 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCC-CCC--Ch----HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTAT-LYQ--TE----QPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~-~Yg--sE----~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~ 109 (328)
.+.++..+.++.+.+.|++.|-... ..+ .+ ..+-+.++.. +...+.|+...+. .+.+. -
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i-------k~~~l~i~~s~G~--l~~E~-----l 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI-------RGMGMEVCCTLGM--LEKEQ-----A 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH-------hcCCcEEEECCCC--CCHHH-----H
Confidence 5788888899999999999884321 111 22 3455666654 2223444433321 22222 2
Q ss_pred HHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC
Q 020299 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (328)
Q Consensus 110 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 165 (328)
+.|+..|+|++- |..+.. +. .++.- ......++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~----~~LeTs-~~--~y~~i---~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYN----HNLDTS-RE--YYPNV---ITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEE----eeecCC-hH--HhCCc---CCCCCHHHHHHHHHHHHHcCC
Confidence 334455776643 233221 10 00000 001358899999999999984
No 218
>PLN02444 HMP-P synthase
Probab=25.17 E-value=7.3e+02 Score=25.18 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=91.2
Q ss_pred CCeEEcCCCCccccc-ceeeCCcCCCCChhHHHHHHHHHHHcCCCeE-eCCCCCCChHHHHHHHHHHHhcCCCCCCCcEE
Q 020299 12 IPDVPLKSSNRRMPV-LGLGTAASPFSGSETTKLAILEAMKLGYRHF-DTATLYQTEQPLGDAIAEALSTGIIKSRDELF 89 (328)
Q Consensus 12 ~~~~~L~~~~~~vs~-lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~-DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~ 89 (328)
.+...+|.+ +.+-. .-+|+.... .+.++-.+-+..|.+.|-..+ |-+. .|.-..+-+++-+ ...+-
T Consensus 210 ~~p~~IG~g-l~tKVNANIGtS~~~-s~ie~EveK~~~A~~~GADTvMDLST-Ggdi~~iR~~Il~---------~spvP 277 (642)
T PLN02444 210 LEPMIVGRN-FLVKVNANIGNSAVT-SSIEEEVYKLQWATMWGADTVMDLST-GRHIHETREWILR---------NSPVP 277 (642)
T ss_pred CCceEecCC-ceeEEeeeecCCCCC-CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHH---------cCCCC
Confidence 333444554 44321 234444432 344455556788999997644 5543 2333333333321 11121
Q ss_pred EEe--------cc--CCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHH
Q 020299 90 IAS--------KL--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE 159 (328)
Q Consensus 90 I~t--------K~--~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 159 (328)
|-| |+ ...+.+.+.+...|++..+ +-+|.+-||.- -..+.++.
T Consensus 278 VGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQae----qGVDfmTIH~G-----------------------v~~~~v~~ 330 (642)
T PLN02444 278 VGTVPIYQALEKVDGIAENLTWEVFRETLIEQAE----QGVDYFTIHAG-----------------------VLLRYIPL 330 (642)
T ss_pred ccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH----hCCCEEEEChh-----------------------hHHHHHHH
Confidence 221 11 1234566777777776554 45677899964 23445555
Q ss_pred HHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCCC
Q 020299 160 CQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIW 230 (328)
Q Consensus 160 l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l~ 230 (328)
++ + |-.|+-+-...-+..++.... .=||++.. +++++.|++++|.+-----|.- |.+.
T Consensus 331 ~~--~--R~tgIVSRGGSi~a~Wml~~~--------kENPlYe~FD~ileI~k~YDVtlSLGDGLRP-G~ia 389 (642)
T PLN02444 331 TA--K--RMTGIVSRGGSIHAKWCLAYH--------KENFAYEHWDDILDICNQYDIALSIGDGLRP-GSIY 389 (642)
T ss_pred Hh--C--cccCceeCCcHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Cccc
Confidence 54 2 788888777777666654432 22455544 8899999999999865444432 4443
No 219
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.11 E-value=70 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCeEEEeccCCC
Q 020299 204 NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
.++++.|++.||.|++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999988854
No 220
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=24.90 E-value=3.1e+02 Score=22.77 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHH-HHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHH
Q 020299 42 TKLAILE-AMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKS 111 (328)
Q Consensus 42 ~~~~l~~-A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~s 111 (328)
....+.. ..+.|++.....-.--.+..|-++|+... .+.+++|+|=. ......|...+++.+.
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~------~~~dlVIttGG-~G~t~~D~t~ea~~~~ 83 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS------ERADLVITTGG-LGPTHDDLTREAVAKA 83 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH------hCCCEEEECCC-CCCCCCChHHHHHHHH
Confidence 3334444 44779887654434336777888888652 47789999843 2222235565666554
No 221
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=24.69 E-value=3.6e+02 Score=23.62 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCC-------hhHHHHHHHhCCCCCeeeccccCc
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFS-------CKKLGDILATAKIPPAANQVEMNP 199 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~-------~~~l~~~~~~~~~~~~~~q~~~~~ 199 (328)
...=+++-.++.++|||+++=+|.-+ +..+.+-+...+++...+-+.|.-
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAG 134 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAG 134 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccC
Confidence 33456788899999999999998755 344555555556654444444443
No 222
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.53 E-value=5.3e+02 Score=23.28 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=73.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEeC----------CCCCC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDT----------ATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVV 105 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DT----------A~~Yg-sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~ 105 (328)
.+.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++... ..-++-|..|+.+.. +.+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~~ 169 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDIV 169 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhHH
Confidence 34577788888888899999986 22344 5666666666540 112577888975432 2222
Q ss_pred HHHHHHHHHhCCCceeEEE------eecCCCCCC--CCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCC-Ch
Q 020299 106 PALQKSLENLQLEYIDLYV------IHWPVSSKP--GSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SC 176 (328)
Q Consensus 106 ~~l~~sL~~Lg~d~iDl~~------lH~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~ 176 (328)
.+-+.++..|.|.|++.- +|.-.. .+ +......+. .....-.++.+.++++.=.+.-||+... ++
T Consensus 170 -~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~-~~~~~~~~gg~sg----~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 170 -EIARAAEEAGADGLTLINTLKGMAIDIETR-KPILGNVTGGLSG----PAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -HHHHHHHHcCCCEEEEECCCcccccccccC-ceeecCCcceecC----cccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 333456778887776531 111000 00 000000000 0011234566667776656888888886 57
Q ss_pred hHHHHHHHh
Q 020299 177 KKLGDILAT 185 (328)
Q Consensus 177 ~~l~~~~~~ 185 (328)
+.+.+++..
T Consensus 244 ~da~~~l~~ 252 (296)
T cd04740 244 EDALEFLMA 252 (296)
T ss_pred HHHHHHHHc
Confidence 888888874
No 223
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.51 E-value=5.8e+02 Score=23.80 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTA 60 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA 60 (328)
.+.++..+++...-++||..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 467888889998889999999984
No 224
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.47 E-value=6.1e+02 Score=24.00 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccc---cHHHHHHHHHcCCeEEEeccCC
Q 020299 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 152 ~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
..+..+..+...+.++..-+...+.+.++++++. +.+..++..+-||.-. -+++.+.|+++|+.++.=..++
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 102 GTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 4455555555555555555555566777766642 2333444445555433 2788999999998888655543
No 225
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.46 E-value=6.3e+02 Score=24.15 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=57.5
Q ss_pred CChhHHHHHHHhCC----CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHh
Q 020299 174 FSCKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAK 248 (328)
Q Consensus 174 ~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~ 248 (328)
.+++++.++++... +.+ .-+-++.||-.-..+.++..++.|+.-+..++-.. .++.++.+.+.+
T Consensus 80 l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~-----------~d~~L~~l~R~~ 148 (400)
T PRK07379 80 LSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAF-----------QDELLALCGRSH 148 (400)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccC-----------CHHHHHHhCCCC
Confidence 34677777765532 211 12334555544457889999999998887766543 345566665555
Q ss_pred CCCHHHHHHHHHhhCC-----cEEeeCC--CCHHHHHHhhcc
Q 020299 249 GKTVAQVCLRWAYEQG-----VCVVVKS--FNKERMKENLDI 283 (328)
Q Consensus 249 ~~s~~q~al~~~l~~~-----~~vi~g~--~~~~~l~enl~a 283 (328)
......-+++.+...+ +-.|.|. .+.+++.+.++.
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 4444444566666554 2245553 466676666654
No 226
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.40 E-value=4.3e+02 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.7
Q ss_pred CCccHHHHHHHHHHHHHcCCcceEEec
Q 020299 146 LPMDFKSVWEAMEECQNLGYTKAIGVS 172 (328)
Q Consensus 146 ~~~~~~~~~~~L~~l~~~Gkir~iGvS 172 (328)
.....+.+++.++.+++.| ++.|-+.
T Consensus 173 rsr~~e~V~~Ei~~l~~~g-~~eI~l~ 198 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDG-VKEIHLI 198 (437)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEe
Confidence 4456899999999999987 6777654
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.24 E-value=3.4e+02 Score=28.80 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc--CCcceEEecCCChhH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYTKAIGVSNFSCKK 178 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvS~~~~~~ 178 (328)
-+.+++-++.....-.....-+|+|+..+.. ..+.+++|.+..++ ..+++|-++|.....
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------------T~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhC------------------CHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 4566666655433322234567888765432 23456666666666 589999999876555
Q ss_pred HHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCe
Q 020299 179 LGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQ 216 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~ 216 (328)
+..++.. +.+++|..+..+ ..|...|.+.||.
T Consensus 163 p~TIrSR------Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 163 PVTVLSR------CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cchhhhh------eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 5444443 345556555443 2344445555543
No 228
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.19 E-value=4.7e+02 Score=22.57 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHH
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 182 (328)
.++..+..+.|.+.| |+.|=|+.-++..++.+
T Consensus 15 ~~~a~~ia~al~~gG-i~~iEit~~tp~a~~~I 46 (201)
T PRK06015 15 VEHAVPLARALAAGG-LPAIEITLRTPAALDAI 46 (201)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEeCCCccHHHHH
Confidence 567777777777665 77777776665554433
No 229
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=23.98 E-value=1.7e+02 Score=23.70 Aligned_cols=122 Identities=14% Similarity=0.234 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccC---cccccHHHHHHHHHcCCeE-EEeccCC-CCC
Q 020299 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMN---PLWQQNKLREFCKAKDIQL-AAYAPLG-ARG 227 (328)
Q Consensus 153 ~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~l~~~~~~~gi~v-~a~~pl~-~~G 227 (328)
....+...++ +..-|.|...+.+.+..+.....+ +++.+++. ++.-....+..|.++|+.+ +.|+|+- .
T Consensus 14 ~~~~~~~~~~--~~divav~p~~~~~~~~a~~~~~v--DiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~-- 87 (150)
T PF01876_consen 14 LRRSLSKFRK--KYDIVAVRPGSEKAFRAACSDPRV--DIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRS-- 87 (150)
T ss_dssp HHHHHHHTTT----SEEEEE-S-HHHHHHHHHTT----SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS--
T ss_pred HHHHhhcccC--CceEEEEEcCCHHHHHHHHhcCCC--CEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhcc--
Confidence 3444444443 566788888888888888887754 46666653 3333478899999999988 6788775 2
Q ss_pred CCCCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccC----CcCCHHHHH
Q 020299 228 TIWGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFN----WELTDEETK 294 (328)
Q Consensus 228 ~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~----~~L~~~~~~ 294 (328)
. ...+..- .+-.+..+++....+.++-.|++++-+++.-.+..+ +-+++++..
T Consensus 88 -----~---~~~r~~~------~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~ 144 (150)
T PF01876_consen 88 -----D---GSNRRNF------ISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAK 144 (150)
T ss_dssp ---------HHHHHHH------HHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHH
T ss_pred -----C---cHHHHHH------HHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHH
Confidence 0 0111111 123455677777777777788887776665544433 245655543
No 230
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.93 E-value=1.5e+02 Score=28.18 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHH---HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPL---GDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~l---G~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~ 113 (328)
..+.+..+.|+.+++.|+- ...|++++++ -.|.++.....+ +.+.++.+. .+...+...++
T Consensus 38 ~~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i--~~e~i~~~p----------~VVpgi~~~I~ 101 (388)
T COG1168 38 PTPPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEI--KPEWIVFVP----------GVVPGISLAIR 101 (388)
T ss_pred CCCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCC--CcceEEEcC----------cchHhHHHHHH
Confidence 4566788899999999963 3345566543 333333222222 233333222 24444555555
Q ss_pred HhCCCceeEEEeecCC
Q 020299 114 NLQLEYIDLYVIHWPV 129 (328)
Q Consensus 114 ~Lg~d~iDl~~lH~p~ 129 (328)
.|- +-=|-+.++.|.
T Consensus 102 ~~T-~~gd~Vvi~tPv 116 (388)
T COG1168 102 ALT-KPGDGVVIQTPV 116 (388)
T ss_pred HhC-cCCCeeEecCCC
Confidence 553 445888888774
No 231
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=23.78 E-value=6.6e+02 Score=24.15 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=85.1
Q ss_pred CChhHHHHHHHHHHHcCCC-eEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec--------cC--CCCCChhhHH
Q 020299 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK--------LW--CSDAHRELVV 105 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin-~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK--------~~--~~~~~~~~i~ 105 (328)
.+-++-.+-+..|.+.|-. ..|-+. .|.-..+-+++=+ -.++=|-|= +. ..+.+.+.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~---------~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~ 144 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIR---------NSPVPVGTVPIYQALEEVNGKVEDLTEDDFF 144 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHh---------cCCCCcCCchHHHHHHHHhcchhhCCHHHHH
Confidence 3445555667888999965 446554 2443333333321 111111111 01 2355667777
Q ss_pred HHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHh
Q 020299 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (328)
Q Consensus 106 ~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 185 (328)
..+++..+ +-+|.+-+|.- -.++.++.+++.|+ ..|+-+-...-+...+-.
T Consensus 145 ~~v~~qa~----~GVdfmTIHaG-----------------------V~~~~~~~~~~~~R--~~giVSRGGsi~a~Wml~ 195 (432)
T COG0422 145 DTVEKQAE----QGVDFMTIHAG-----------------------VLLEYVPRTKRSGR--VTGIVSRGGSIMAAWMLH 195 (432)
T ss_pred HHHHHHHH----hCCcEEEeehh-----------------------hhHHHHHHHHhcCc--eeeeeccchHHHHHHHHH
Confidence 77776654 45677899953 35678889999886 567666666655554433
Q ss_pred CCCCCeeeccccCccccc-HHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 186 AKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 186 ~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
.. .=||+... .++++.|++++|.+----.|.- |.+
T Consensus 196 ~~--------~ENply~~fd~lleI~k~yDvtlSLGDglRP-G~i 231 (432)
T COG0422 196 NH--------KENPLYEHFDELLEIFKEYDVTLSLGDGLRP-GCI 231 (432)
T ss_pred cC--------CcCchhhhHHHHHHHHHHhCeeeeccCCCCC-Ccc
Confidence 32 22455544 8999999999998865555543 444
No 232
>PRK12569 hypothetical protein; Provisional
Probab=23.64 E-value=3.2e+02 Score=24.46 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=52.7
Q ss_pred cccceeeCCcCCCCChhHHHHHHHHH-HHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC-----
Q 020299 24 MPVLGLGTAASPFSGSETTKLAILEA-MKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS----- 97 (328)
Q Consensus 24 vs~lglG~~~~~~~~~~~~~~~l~~A-~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~----- 97 (328)
+-. +||.|.++...+++.-.+|..| +.+|. +.|....+-+.++-. ....|-|-..-+.+
T Consensus 11 lGE-sfG~~~~g~~~D~~lmp~ItsaNIACG~-------HAGDp~~M~~tv~lA-------~~~~V~IGAHPsyPD~~gF 75 (245)
T PRK12569 11 MGE-GFGPWRIGDGVDEALMPLISSANIATGF-------HAGDPNIMRRTVELA-------KAHGVGIGAHPGFRDLVGF 75 (245)
T ss_pred cCC-CCCCcCCCCccHHHHHHHhhhHHHhccc-------cCCCHHHHHHHHHHH-------HHcCCEeccCCCCCcCCCC
Confidence 444 7899998632267777788777 56775 777788888888876 44555665554322
Q ss_pred -----CCChhhHHHHHHHHHHHhC
Q 020299 98 -----DAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 98 -----~~~~~~i~~~l~~sL~~Lg 116 (328)
..+++.++..+...+..|.
T Consensus 76 GRr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 76 GRRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3478888888777666664
No 233
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.41 E-value=5.3e+02 Score=24.62 Aligned_cols=144 Identities=8% Similarity=0.050 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHhc---CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCc
Q 020299 65 TEQPLGDAIAEALST---GIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (328)
Q Consensus 65 sE~~lG~al~~~~~~---~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 141 (328)
|..-+=++++-...+ ++ ....+.|+|=.. ...|++-.++ .++ .==.+-||.|+....... -|..
T Consensus 183 NydnV~~ai~il~d~~g~~i--s~R~ITVST~Gi-----vp~I~~la~~---~~~--v~LAiSLHA~~~e~R~~l-mPin 249 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNL--GARSMTVSTVGL-----VKGIRRLANE---RLP--INLAISLHAPDDALRSEL-MPVN 249 (371)
T ss_pred hHHHHHHHHHHhcCccccCc--CCCceEEEeecc-----hhHHHHHHhc---ccC--ceEEEEeCCCCHHHHHHh-cCcc
Confidence 555566677654221 23 345677777631 1233333332 112 112367898865432100 0111
Q ss_pred cCCCCCccHHHHHHHHHHHHHcCCcc----eEEec--CCChhHHHHHHHhCC-C------CCeeeccccCccccc-----
Q 020299 142 KEDFLPMDFKSVWEAMEECQNLGYTK----AIGVS--NFSCKKLGDILATAK-I------PPAANQVEMNPLWQQ----- 203 (328)
Q Consensus 142 ~~~~~~~~~~~~~~~L~~l~~~Gkir----~iGvS--~~~~~~l~~~~~~~~-~------~~~~~q~~~~~~~~~----- 203 (328)
+ ...++++++++.+..++..=| |+=+. |-+.++..++.+..+ . +..+|-++||+....
T Consensus 250 ~----~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p 325 (371)
T PRK14461 250 R----RYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS 325 (371)
T ss_pred c----CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC
Confidence 1 235889999999987553211 22222 555777777666654 3 457999999986421
Q ss_pred -----HHHHHHHHHcCCeEEEeccCCC
Q 020299 204 -----NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 204 -----~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
..+.+.++++||.+......|.
T Consensus 326 s~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 326 ERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 4677788999999999988864
No 234
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=23.33 E-value=1.7e+02 Score=28.03 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEEEeccC----------CCCCCh----hhHHHHHHHHHHHhCCCceeEEEeecCC
Q 020299 65 TEQPLGDAIAEALSTGIIKSRDELFIASKLW----------CSDAHR----ELVVPALQKSLENLQLEYIDLYVIHWPV 129 (328)
Q Consensus 65 sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~----------~~~~~~----~~i~~~l~~sL~~Lg~d~iDl~~lH~p~ 129 (328)
++..|.+.+++. ...=+||-||+- +..++. +.|++.+.+.|++-|+....+|++-+.+
T Consensus 129 ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~d 200 (376)
T PF05049_consen 129 NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFD 200 (376)
T ss_dssp HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTT
T ss_pred hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCC
Confidence 667788888875 345678999982 123332 5677778889999999999999998764
No 235
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=23.28 E-value=6.3e+02 Score=23.74 Aligned_cols=176 Identities=10% Similarity=0.017 Sum_probs=87.1
Q ss_pred CCCCCCCeEEcCCCCcccccc--eeeCCcCCCCChhHHHHHHHHHHH----cCCCeEeCCCCCCChHHHHHHHHHHHhcC
Q 020299 7 MGSISIPDVPLKSSNRRMPVL--GLGTAASPFSGSETTKLAILEAMK----LGYRHFDTATLYQTEQPLGDAIAEALSTG 80 (328)
Q Consensus 7 m~~~~~~~~~L~~~~~~vs~l--glG~~~~~~~~~~~~~~~l~~A~~----~Gin~~DTA~~YgsE~~lG~al~~~~~~~ 80 (328)
++...++...+..+ ..+..| .|....|....-.++.+++...++ .+.+.|=|-..==.-.-++..|+..++.|
T Consensus 15 ~~~~~v~~~~~~~~-~~~~~l~~~~~~~gF~A~~l~~A~~i~~~M~~~~~~~~~~ifL~~tg~misaGlr~~i~~Li~~~ 93 (334)
T PRK03971 15 LEGIDVEGPDLDGD-IDLEEVLDYYAKIGFQATHLGKAIKIWKKIEEKRKKEEATVFLGYTSNIVSSGLREIIAYLVKEK 93 (334)
T ss_pred CCCCCccCCCCCCC-CCHHHHHHHHHHcCccHHHHHHHHHHHHHHHhhcccCCCeEEEEccccccchhHHHHHHHHHHcC
Confidence 33344554455444 555444 233333322223567888888885 66665532211114556778888776555
Q ss_pred CCCCCCcEEEEeccCCCCCChhhHHHHH-----------HHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCcc
Q 020299 81 IIKSRDELFIASKLWCSDAHRELVVPAL-----------QKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD 149 (328)
Q Consensus 81 ~~~~R~~~~I~tK~~~~~~~~~~i~~~l-----------~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 149 (328)
. =+++|+|=.... +.+.+++ +.-|+..|+++|-=+++..-. -..
T Consensus 94 ~----Vd~iVtTganle----hDi~~~l~~~~~G~f~~dd~~Lr~~ginRIgnv~ip~e~-----------------y~~ 148 (334)
T PRK03971 94 K----VDVIVTTAGGVE----EDFIKCLKPFILGEWDVDGAELREKGINRIGNIFVPNDR-----------------YIE 148 (334)
T ss_pred C----eeEEEeCCCchH----HHHHHHhcccccCCCCCCHHHHHHcCCCccceeeeChHH-----------------HHH
Confidence 4 256666654210 1222222 456667777776555553210 011
Q ss_pred HHHHHH-HHHHHH----HcCCcceEEecCCChhHH-HHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 150 FKSVWE-AMEECQ----NLGYTKAIGVSNFSCKKL-GDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 150 ~~~~~~-~L~~l~----~~Gkir~iGvS~~~~~~l-~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
+++.+. .++++. +.++ .|++..+ .++-+. +++ .++ ..++..++-+|.++||+|+.-+..
T Consensus 149 ~E~~i~~il~~~~~~q~~~~~-------~~s~~e~i~~lGk~------i~~-~~~-~~~e~Sil~~Ayk~~VPIf~Pa~t 213 (334)
T PRK03971 149 FEEYMYEFFEELLAKQREEGK-------IITASEFCYELGRF------MDE-KLG-KEKEKSILYWAYKNNIPIFCPAIT 213 (334)
T ss_pred HHHHHHHHHHHHHHhhhccCC-------cccHHHHHHHHHHH------Hhh-hcc-CCccchHHHHHHHcCCCEEcCCcc
Confidence 333222 344442 2232 1555554 333221 110 111 223578999999999999875544
No 236
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.27 E-value=4.2e+02 Score=21.71 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCCC---C--hHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-CChhhHHHHHHHHH
Q 020299 39 SETTKLAILEAMKLGYRHFDTATLYQ---T--EQPLGDAIAEALSTGIIKSRDELFIASKLWCSD-AHRELVVPALQKSL 112 (328)
Q Consensus 39 ~~~~~~~l~~A~~~Gin~~DTA~~Yg---s--E~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~-~~~~~i~~~l~~sL 112 (328)
.++..+..+.|.+.|...+.....|+ + ++.+-+.+++.... -+.++-|.-+..+.. .+++.+.+..+..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~~- 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARIA- 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHHH-
Confidence 57788999999999999999654443 3 45555555544221 012344444433322 2555555554333
Q ss_pred HHhCCCcee
Q 020299 113 ENLQLEYID 121 (328)
Q Consensus 113 ~~Lg~d~iD 121 (328)
+..|++.+.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567776654
No 237
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=23.12 E-value=5.6e+02 Score=23.06 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChh-HH
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK-KL 179 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~-~l 179 (328)
.+.+.+-+.+.++.++ +++..+=++..-....+ ..-+.++.+.++.+++.|..-..=+=-++.. ..
T Consensus 36 ~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G------------~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv 102 (261)
T TIGR02127 36 AAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFG------------SEGFKALEEVIAHARSLGLPVLADVKRGDIGSTA 102 (261)
T ss_pred HHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcC------------HHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHH
Confidence 3455566777888887 78887777654211100 0012334444566666675433333333322 22
Q ss_pred HHHHHh-C-CCCCeeeccccCccccc---HHHHHHHHHc--CCeEEEeccCCCCCCCCCCCcccChHHHHHHHHHhCCCH
Q 020299 180 GDILAT-A-KIPPAANQVEMNPLWQQ---NKLREFCKAK--DIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (328)
Q Consensus 180 ~~~~~~-~-~~~~~~~q~~~~~~~~~---~~l~~~~~~~--gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~~~s~ 252 (328)
....+. . ...+ ..+..|++... ..+++.++++ ++.|++-...-+ ...++.+.-.-|.+.
T Consensus 103 ~~~a~a~~~~~g~--D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~------------~~~lq~~~~~~~~~~ 168 (261)
T TIGR02127 103 SAYAKAWLGHLHA--DALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPG------------GADLQDLRVSDGRTV 168 (261)
T ss_pred HHHHHHHHhhcCC--CEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCC------------HHHHhhhhccCCCCH
Confidence 211111 1 1122 23345555443 4455555554 444444333311 112222221122344
Q ss_pred HHHHHHHHhhC-------C-cEEeeCCCCHHHHHHhh
Q 020299 253 AQVCLRWAYEQ-------G-VCVVVKSFNKERMKENL 281 (328)
Q Consensus 253 ~q~al~~~l~~-------~-~~vi~g~~~~~~l~enl 281 (328)
.+..++++..- + ..+++|+++++++.+.=
T Consensus 169 ~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR 205 (261)
T TIGR02127 169 YEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLR 205 (261)
T ss_pred HHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHH
Confidence 44444443321 3 67899999987665543
No 238
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.11 E-value=5.2e+02 Score=22.74 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCcceEEecC-CChhHHHHHHHhCCCCCeeeccc-cCcccccHHHHHHHHHcCCeE
Q 020299 154 WEAMEECQNLGYTKAIGVSN-FSCKKLGDILATAKIPPAANQVE-MNPLWQQNKLREFCKAKDIQL 217 (328)
Q Consensus 154 ~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~-~~~~~~~~~l~~~~~~~gi~v 217 (328)
|+.+.++++.-.+.-|.-.. .+.+.+.++++..++.-+++--- |..-..-.++.+.|++.||.+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 44555555554556555443 34566777666544432222111 111122256777777777654
No 239
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.04 E-value=4.7e+02 Score=25.22 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCCCC
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGAR 226 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~~ 226 (328)
...+..-++.+.++.-|....+-.-+...+.+.+...+.+..++..+-||...- ..+.+.|+++|+.++.=+.++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 456778888888887777777776666666655543345667888888888764 7889999999999998888876
Q ss_pred CCCC
Q 020299 227 GTIW 230 (328)
Q Consensus 227 G~l~ 230 (328)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 5554
No 240
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=23.04 E-value=1.1e+03 Score=26.52 Aligned_cols=58 Identities=7% Similarity=-0.064 Sum_probs=43.2
Q ss_pred eEEecCCChhHHHHHHHhCCCCCeeeccccCcccc-cHHHHHHHHHcCCeEEEeccCCC
Q 020299 168 AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ-QNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 168 ~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
-|-+-+.+++.++.+++.+.-.+.+|-++.-.... -..+++.|+++|..++++.--..
T Consensus 433 PlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~ 491 (1229)
T PRK09490 433 PIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQ 491 (1229)
T ss_pred eEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC
Confidence 36777888999999999866567787555433222 25799999999999999865433
No 241
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=22.76 E-value=3.8e+02 Score=21.01 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=44.8
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCC---ceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHH
Q 020299 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQLE---YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (328)
Q Consensus 84 ~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d---~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 160 (328)
+|=-+.|+-|++.. ..+..+++.+.++.+.+..+ -.|++++-.+... ..+..++.+.|+.+
T Consensus 48 ~R~G~~VsKKvG~A-V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~---------------~~~~~~l~~~l~~l 111 (122)
T PRK03459 48 PRFGLVVSKAVGNA-VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAA---------------TASSAELERDVRAG 111 (122)
T ss_pred CEEEEEEeeeccch-hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccc---------------cCCHHHHHHHHHHH
Confidence 56678888887653 44688888888888887643 3699998876532 23466777777766
Q ss_pred HHc
Q 020299 161 QNL 163 (328)
Q Consensus 161 ~~~ 163 (328)
.+.
T Consensus 112 l~k 114 (122)
T PRK03459 112 LGK 114 (122)
T ss_pred HHH
Confidence 554
No 242
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=22.64 E-value=5e+02 Score=22.34 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg 116 (328)
.++++-.+++..+++.|+.++|.--....+...-...... .+.++.++-..+....+.+.+.+.+++. ..+|
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~-------~~~~iI~S~H~f~~tp~~~~l~~~~~~~-~~~g 143 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK-------GGTKIILSYHDFEKTPSWEELIELLEEM-QELG 143 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH-------TTSEEEEEEEESS---THHHHHHHHHHH-HHTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh-------CCCeEEEEeccCCCCCCHHHHHHHHHHH-HhcC
Confidence 5678889999999999999999755432222211112221 4677777777444444445555555544 4777
Q ss_pred CCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHH
Q 020299 117 LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 117 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 182 (328)
.|.+=+.....- ..+...+++...++++.-.+.-|+++.-..-.+.++
T Consensus 144 adivKia~~~~~------------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 144 ADIVKIAVMANS------------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp -SEEEEEEE-SS------------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred CCeEEEEeccCC------------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 766555544321 112445556666666544556666655444444444
No 243
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=2.8e+02 Score=22.99 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcCCCCCCCcEEEEecc-CCCCCChhhHHHHHHHHHHHhC
Q 020299 39 SETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSDAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 39 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-sE~~lG~al~~~~~~~~~~~R~~~~I~tK~-~~~~~~~~~i~~~l~~sL~~Lg 116 (328)
++...-.+++|-+.||.+|=.|..|| +-..+-+.+. | .=+++++|.- +-..-+...+...+++-|+..|
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g----~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G----DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERG 83 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c----CceEEEEEeecccccCCceecCHHHHHHHHHcC
Confidence 34455567788899999999999997 3222222221 1 1235555553 2222334567788888999999
Q ss_pred CC
Q 020299 117 LE 118 (328)
Q Consensus 117 ~d 118 (328)
.+
T Consensus 84 a~ 85 (186)
T COG1751 84 AK 85 (186)
T ss_pred ce
Confidence 64
No 244
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.24 E-value=7.5e+02 Score=24.23 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=62.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCc-EEEEeccCCCCCChhhHHHHHHHHHHHhC---CC--ceeEEEeecCCCCCC
Q 020299 60 ATLYQTEQPLGDAIAEALSTGIIKSRDE-LFIASKLWCSDAHRELVVPALQKSLENLQ---LE--YIDLYVIHWPVSSKP 133 (328)
Q Consensus 60 A~~YgsE~~lG~al~~~~~~~~~~~R~~-~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg---~d--~iDl~~lH~p~~~~~ 133 (328)
.-.||.+.-|-++|++..+.. ++.+ ++|.|-.-.. .--+.+..-+++.-++++ .. .+.++.+|.|+....
T Consensus 71 d~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~e-iiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs 146 (461)
T TIGR02931 71 GAVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTE-IIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS 146 (461)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHH-hhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc
Confidence 346788888889988764432 3334 4566654221 112455555555444442 11 357899998765321
Q ss_pred CCCCCCCccCCCCCccHHHHHHHHH-HHHH----cCCcceEEecC--CChhHHHHHHHhCCCCCe
Q 020299 134 GSYEFPIKKEDFLPMDFKSVWEAME-ECQN----LGYTKAIGVSN--FSCKKLGDILATAKIPPA 191 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~----~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~ 191 (328)
. ..-...+++++- .+.. +++|--||-.+ -+.+.+.++++..++++.
T Consensus 147 --~----------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 147 --M----------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred --H----------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 0 001223333322 2221 46688888543 245678888888877644
No 245
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.19 E-value=5.2e+02 Score=22.42 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHHHhCCCceeEEEee-cCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCC-cceEEec-CCChh
Q 020299 101 RELVVPALQKSLENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVS-NFSCK 177 (328)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS-~~~~~ 177 (328)
++.+..+. .+|.||+-+.+.- +|... +. +...++.+.-. ++.+||. |.+.+
T Consensus 12 ~eda~~a~-----~~gad~iG~If~~~SpR~V-----------------s~----~~a~~i~~~v~~~~~VgVf~n~~~~ 65 (208)
T COG0135 12 LEDAKAAA-----KAGADYIGFIFVPKSPRYV-----------------SP----EQAREIASAVPKVKVVGVFVNESIE 65 (208)
T ss_pred HHHHHHHH-----HcCCCEEEEEEcCCCCCcC-----------------CH----HHHHHHHHhCCCCCEEEEECCCCHH
Confidence 45555544 4899999877754 33211 12 23334444433 8899987 45577
Q ss_pred HHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcC-CeEE
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKD-IQLA 218 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~g-i~v~ 218 (328)
.+.++++... ++++|++-. ...+.++..++.. +.|+
T Consensus 66 ~i~~i~~~~~--ld~VQlHG~---e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 66 EILEIAEELG--LDAVQLHGD---EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHhcC--CCEEEECCC---CCHHHHHHHHhhcCCceE
Confidence 7888887664 568888754 2345555555543 5444
No 246
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.19 E-value=1.8e+02 Score=26.14 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCCCCCcccChHHHHHHHHH----------hCCCH------HHH--HHHHHhh---
Q 020299 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEA----------KGKTV------AQV--CLRWAYE--- 262 (328)
Q Consensus 204 ~~l~~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~----------~~~s~------~q~--al~~~l~--- 262 (328)
.++.+.|+++|+.++.+-+-.. ..++++.+++. .|+|- .++ .++-+.+
T Consensus 130 ~~~~~~~~~~gl~~I~lv~p~t-----------~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~ 198 (259)
T PF00290_consen 130 EELREAAKKHGLDLIPLVAPTT-----------PEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTD 198 (259)
T ss_dssp HHHHHHHHHTT-EEEEEEETTS------------HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCeEEEEECCCC-----------CHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcC
Confidence 5667777777776665443321 34666666665 23322 222 1222222
Q ss_pred CCcEEeeCCCCHHHHHHhhcccC
Q 020299 263 QGVCVVVKSFNKERMKENLDIFN 285 (328)
Q Consensus 263 ~~~~vi~g~~~~~~l~enl~a~~ 285 (328)
.|+++=.|.++++|+++-....|
T Consensus 199 ~Pv~vGFGI~~~e~~~~~~~~aD 221 (259)
T PF00290_consen 199 LPVAVGFGISTPEQAKKLAAGAD 221 (259)
T ss_dssp S-EEEESSS-SHHHHHHHHTTSS
T ss_pred cceEEecCCCCHHHHHHHHccCC
Confidence 23555577778887777665444
No 247
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.18 E-value=6.9e+02 Score=24.43 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCCeEEcCCCCcccccceeeCCcCCCCChhHHHHHHHHHHHcCCCeEeC
Q 020299 11 SIPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDT 59 (328)
Q Consensus 11 ~~~~~~L~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~A~~~Gin~~DT 59 (328)
+.|.+.......++-...|||-. +..++..+.....+.|+...|.
T Consensus 10 ~~~~~~~~~~~~~~~i~t~GC~~----N~~dse~~~~~l~~~G~~~~~~ 54 (459)
T PRK14338 10 PAPDRDATPRERRYYVWTVGCQM----NVSDSERLEAALQGVGYSPAER 54 (459)
T ss_pred CCcccccCCCCCEEEEEecCCCC----CHHHHHHHHHHHHHCcCEECCC
Confidence 34444443332457778999975 5667777777777889876664
No 248
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.14 E-value=2.5e+02 Score=24.22 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecC-CChhH
Q 020299 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN-FSCKK 178 (328)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-~~~~~ 178 (328)
+++...+. -+.|-+-|+..+.+=+= .| +..+.+++++++..=-.||+.+ .+.++
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~~-tp-----------------------~a~~~I~~l~~~~~~~~vGAGTVl~~e~ 68 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITLR-TP-----------------------AALDAIRAVAAEVEEAIVGAGTILNAKQ 68 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCC-Cc-----------------------cHHHHHHHHHHHCCCCEEeeEeCcCHHH
Confidence 34444443 34566678777775441 11 3445666666554335688876 45888
Q ss_pred HHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEE
Q 020299 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (328)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 219 (328)
++++++..- ++ -.+|. -+.+++++|+++||.++.
T Consensus 69 a~~ai~aGA-~F-----ivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 69 FEDAAKAGS-RF-----IVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHcCC-CE-----EECCC-CCHHHHHHHHHcCCCEeC
Confidence 888887542 32 22331 347999999999998875
No 249
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.11 E-value=6.5e+02 Score=23.50 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEeCCCCCC---------------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 020299 37 SGSETTKLAILEAMKLGYRHFDTATLYQ---------------------TEQPLGDAIAEALSTGIIKSRDELFIASKLW 95 (328)
Q Consensus 37 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---------------------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~ 95 (328)
.+.+.-.++.+++-+.|+.++=|.-.-. +-.+|- .+.+ ....++|+|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~-~va~--------~gkPvilstG~- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIR-YVAK--------TGKPIIMSTGI- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHH-HHHh--------cCCcEEEECCC-
Confidence 4566677888889999999985443221 122221 1221 23445555543
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCC
Q 020299 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (328)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~ 175 (328)
.+.+.+..+++...+ -|. -++.++|+...+ | ...++ --+.++..|++.=. .-||+|.|+
T Consensus 144 ---~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~Y-P------~~~~~-------~nL~~i~~lk~~f~-~pVG~SDHt 202 (327)
T TIGR03586 144 ---ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSY-P------APLED-------ANLRTIPDLAERFN-VPVGLSDHT 202 (327)
T ss_pred ---CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCC-C------CCccc-------CCHHHHHHHHHHhC-CCEEeeCCC
Confidence 256888888887653 342 479999975433 1 11111 12345556665433 479999999
Q ss_pred hhHHH
Q 020299 176 CKKLG 180 (328)
Q Consensus 176 ~~~l~ 180 (328)
.....
T Consensus 203 ~G~~~ 207 (327)
T TIGR03586 203 LGILA 207 (327)
T ss_pred CchHH
Confidence 66533
No 250
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.07 E-value=1.7e+02 Score=26.06 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCcccccceeeCCc---CCC---CChhHHHHHH----HHHHHcCCCeEeCCC--C-CC--ChHHHHHHHH---HHHhcCC
Q 020299 20 SNRRMPVLGLGTAA---SPF---SGSETTKLAI----LEAMKLGYRHFDTAT--L-YQ--TEQPLGDAIA---EALSTGI 81 (328)
Q Consensus 20 ~~~~vs~lglG~~~---~~~---~~~~~~~~~l----~~A~~~Gin~~DTA~--~-Yg--sE~~lG~al~---~~~~~~~ 81 (328)
+|+.+|.++|.+-+ ||. ...+++.+++ ..|.+.|||.|--|. . |. +++...+++. ....-.
T Consensus 66 tgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA- 144 (287)
T COG3623 66 TGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA- 144 (287)
T ss_pred hCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH-
Confidence 34899999998855 344 2223444444 455688999998774 2 22 5554444443 322211
Q ss_pred CCCCCcEEEEecc
Q 020299 82 IKSRDELFIASKL 94 (328)
Q Consensus 82 ~~~R~~~~I~tK~ 94 (328)
.+..|.++.-+
T Consensus 145 --~~aqV~lAvEi 155 (287)
T COG3623 145 --ARAQVMLAVEI 155 (287)
T ss_pred --HhhccEEEeee
Confidence 46667666655
No 251
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.99 E-value=2.5e+02 Score=24.15 Aligned_cols=123 Identities=16% Similarity=0.054 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccCCCCCCC
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTI 229 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~~G~l 229 (328)
.+++.+..+.|.+.| ||.+=|+.-++..++.+......-|.+. +--.- -...+-.+.|.+.|..++. ||-.
T Consensus 19 ~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~~I~~l~~~~p~~~-vGAGT-V~~~e~a~~a~~aGA~Fiv-SP~~----- 89 (196)
T PF01081_consen 19 PEDAVPIAEALIEGG-IRAIEITLRTPNALEAIEALRKEFPDLL-VGAGT-VLTAEQAEAAIAAGAQFIV-SPGF----- 89 (196)
T ss_dssp GGGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTTSE-EEEES---SHHHHHHHHHHT-SEEE-ESS------
T ss_pred HHHHHHHHHHHHHCC-CCEEEEecCCccHHHHHHHHHHHCCCCe-eEEEe-ccCHHHHHHHHHcCCCEEE-CCCC-----
Confidence 445666777777666 8888888777655443321111001110 00000 0123455566666665554 2211
Q ss_pred CCCCcccChHHHHHHHHHhCCCHHHHHHHHHhhCCcEEeeCCCCHHHHHHhhcccC-----C---cCC-HHHHHHhhcCC
Q 020299 230 WGSNRVMECEVLKEIAEAKGKTVAQVCLRWAYEQGVCVVVKSFNKERMKENLDIFN-----W---ELT-DEETKKISDIP 300 (328)
Q Consensus 230 ~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~-----~---~L~-~~~~~~l~~~~ 300 (328)
++. .++++..++...+||+.|+.++...++.-- | .+- ..-++.|....
T Consensus 90 --------~~~---------------v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~ 146 (196)
T PF01081_consen 90 --------DPE---------------VIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPF 146 (196)
T ss_dssp ---------HH---------------HHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT
T ss_pred --------CHH---------------HHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC
Confidence 123 355555567788899999988888876531 1 233 45555555555
Q ss_pred CCCC
Q 020299 301 QSRG 304 (328)
Q Consensus 301 ~~~~ 304 (328)
...+
T Consensus 147 p~~~ 150 (196)
T PF01081_consen 147 PDLP 150 (196)
T ss_dssp TT-E
T ss_pred CCCe
Confidence 4444
No 252
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.98 E-value=3.7e+02 Score=20.62 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHcCCeEEEec
Q 020299 201 WQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 201 ~~~~~l~~~~~~~gi~v~a~~ 221 (328)
..++++.++|+++|+.++.-.
T Consensus 89 ~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp S--HHHHHHHHHTT-EEEESS
T ss_pred hHHHHHHHHHHHcCCEEEeCC
Confidence 345788999999999988633
No 253
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=21.94 E-value=3.4e+02 Score=24.68 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCCCeEeCCC---------CCC--C-------hHHHHHHHHHHHhcCCCCCCCcEEEEeccCC----C
Q 020299 40 ETTKLAILEAMKLGYRHFDTAT---------LYQ--T-------EQPLGDAIAEALSTGIIKSRDELFIASKLWC----S 97 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~---------~Yg--s-------E~~lG~al~~~~~~~~~~~R~~~~I~tK~~~----~ 97 (328)
+...+++++-.+.||++|=-+. .++ - -+.+|+.+++. ++-++..-.. .
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~----------~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKEN----------GIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHT----------T-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHc----------CCeEEecCCcceeCC
Confidence 3456778888899999995443 122 1 13355555543 3456655422 1
Q ss_pred CCChhhHHHHHH------HHHHHhCCCce--eEEEeecC
Q 020299 98 DAHRELVVPALQ------KSLENLQLEYI--DLYVIHWP 128 (328)
Q Consensus 98 ~~~~~~i~~~l~------~sL~~Lg~d~i--Dl~~lH~p 128 (328)
...++-+.+++. +.|+.||.+.- ..+.||--
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~G 153 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVG 153 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeC
Confidence 223566777765 45888998877 88999964
No 254
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=21.78 E-value=6.8e+02 Score=23.73 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=32.7
Q ss_pred ChhHHHHHHHhCCCCCeeeccccCcccc---cHHHHHHHHHcCCeEEEeccCCC
Q 020299 175 SCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
+.+.+++++...+.+..++....||... -+++.+.|+++|+.++.=..++.
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~ 178 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT 178 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 4666776665323444455555665432 27889999999999987666543
No 255
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.73 E-value=2e+02 Score=24.02 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCcceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc-----------HHHHHHHHHcCCeEEEecc
Q 020299 164 GYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-----------NKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 164 Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-----------~~l~~~~~~~gi~v~a~~p 222 (328)
+.=+.||+|.|+.+++.++.+.. .+ + +-++++++. ..+.++++...+.|+|.+-
T Consensus 93 ~~~~~ig~S~h~~~e~~~a~~~g-~d--Y--v~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGG 157 (180)
T PF02581_consen 93 GPDKIIGASCHSLEEAREAEELG-AD--Y--VFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGG 157 (180)
T ss_dssp TTTSEEEEEESSHHHHHHHHHCT-TS--E--EEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS
T ss_pred ccceEEEeecCcHHHHHHhhhcC-CC--E--EEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcC
Confidence 33458999999999988876532 22 2 233343221 5677888888899998653
No 256
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.66 E-value=5.2e+02 Score=24.14 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHc-CC---cceEEec--CCChhHHHHHHHhCC-CCCeeeccccCccccc---------HHHHHHHHH
Q 020299 149 DFKSVWEAMEECQNL-GY---TKAIGVS--NFSCKKLGDILATAK-IPPAANQVEMNPLWQQ---------NKLREFCKA 212 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~l~~~~~~ 212 (328)
.++++++.++++.+. |. ++++-+. |.+.+.++++.+..+ .+..++-++||+.... ..+.+..++
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLK 312 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHH
Confidence 588899999887765 42 4455554 444566666665543 3445777788886421 356677888
Q ss_pred cCCeEEEeccCCC
Q 020299 213 KDIQLAAYAPLGA 225 (328)
Q Consensus 213 ~gi~v~a~~pl~~ 225 (328)
+|+.+..+...+.
T Consensus 313 ~gi~vtvr~~~g~ 325 (343)
T PRK14469 313 NGIEAEIRREKGS 325 (343)
T ss_pred CCCeEEEeCCCCc
Confidence 8999988876643
No 257
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=21.60 E-value=6.8e+02 Score=23.52 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCcEEEEeccC--CCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHH
Q 020299 84 SRDELFIASKLW--CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (328)
Q Consensus 84 ~R~~~~I~tK~~--~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 161 (328)
...-++|.+|.- ......+.+.+.+.+.++.+|....+++.+-.-. ....+++++.+.++.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-----------------g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-----------------GNGIDELLDKIKKAR 152 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-----------------CCCHHHHHHHHHHHh
Confidence 355688999984 2333345666666666777776544666553321 123788888888887
Q ss_pred HcCCcceEEecCCChhHH-HHHHH
Q 020299 162 NLGYTKAIGVSNFSCKKL-GDILA 184 (328)
Q Consensus 162 ~~Gkir~iGvS~~~~~~l-~~~~~ 184 (328)
+.+.+-.+|.+|-.-..+ ..++.
T Consensus 153 ~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 153 NKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHh
Confidence 667889999999986554 44443
No 258
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.59 E-value=5.8e+02 Score=23.51 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCcee
Q 020299 42 TKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYID 121 (328)
Q Consensus 42 ~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iD 121 (328)
..++...|...|+.|+-++..+. -.-+-+++++... .+.--||..+.-+.....-.....++.+-....+.|.-
T Consensus 164 kkd~~~Ia~a~g~~YVA~~~~~~-~~~l~~~i~~A~~-----~~Gps~I~v~sPC~~~~~~~~~~~~~~~klAvetg~~p 237 (299)
T PRK11865 164 KKNMPLIMAAHGIPYVATASIGY-PEDFMEKVKKAKE-----VEGPAYIQVLQPCPTGWGFPPEKTIEIGRLAVETGYWP 237 (299)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCC-HHHHHHHHHHHHh-----CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHhcCcee
Confidence 35566777788999998887763 3334455555422 23445666665322111112334445444455567777
Q ss_pred EEEee
Q 020299 122 LYVIH 126 (328)
Q Consensus 122 l~~lH 126 (328)
||=+.
T Consensus 238 lye~~ 242 (299)
T PRK11865 238 LFEIE 242 (299)
T ss_pred EEEEE
Confidence 76654
No 259
>PRK07328 histidinol-phosphatase; Provisional
Probab=21.55 E-value=5.8e+02 Score=22.71 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCC---------------ChHHHHHHHHHH--HhcCCCCCCCcEEEEeccCCCCCChhh
Q 020299 41 TTKLAILEAMKLGYRHFDTATLYQ---------------TEQPLGDAIAEA--LSTGIIKSRDELFIASKLWCSDAHREL 103 (328)
Q Consensus 41 ~~~~~l~~A~~~Gin~~DTA~~Yg---------------sE~~lG~al~~~--~~~~~~~~R~~~~I~tK~~~~~~~~~~ 103 (328)
...+.++.|.+.|+..+=.+++.. +..-+-..++.. ++... .+=++++-.=+. +-+ .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y--~~i~Il~GiE~~---~~~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF--PDLYVRLGIEAD---YHP-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc--CCCeEEEEEEec---ccC-C
Confidence 367899999999999875444421 111122222221 00010 111223222221 112 2
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHH----HHHHHHHHcCCcceEEec
Q 020299 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW----EAMEECQNLGYTKAIGVS 172 (328)
Q Consensus 104 i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~l~~~Gkir~iGvS 172 (328)
....+++.|++-..||+ +.-+|+.+...-.... ..+.+...+.++++ +.+.++.+.|.+.-+|=-
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~---~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPD---FVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChh---HHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 34555666777777877 7788986421100000 00001112233444 357778888888877744
No 260
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.45 E-value=3.2e+02 Score=20.83 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=30.0
Q ss_pred ecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 171 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
.+..+.+.+..++.....+..++=.--+......++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34455666666665431222222222222233478889999999999887654
No 261
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=21.43 E-value=6.5e+02 Score=24.92 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=63.8
Q ss_pred CcEEEEeccCC-CCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHc-
Q 020299 86 DELFIASKLWC-SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL- 163 (328)
Q Consensus 86 ~~~~I~tK~~~-~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~- 163 (328)
+.-.|.|=+-+ -..+++...+.+.+.. .=| +|++= |+..-.+..++.= ...+..+++++.+..++
T Consensus 166 ~RPLigtiiKP~~GLsp~~~A~~~y~~~-~GG---vD~IK----DDE~l~dq~~~p~-----~eRv~~~~~a~~~a~~eT 232 (475)
T CHL00040 166 GRPLLGCTIKPKLGLSAKNYGRAVYECL-RGG---LDFTK----DDENVNSQPFMRW-----RDRFLFCAEAIYKAQAET 232 (475)
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHH-cCC---Ccccc----cCccCCCCCCCCH-----HHHHHHHHHHHHHHHHhh
Confidence 34455554444 3667888877776655 223 45331 1000001111000 01255677788887665
Q ss_pred CCcceEEecCCC---hhHHHHHHHhC-CCCCeeeccccCccccc--HHHHHHHHHcCCeEEEeccCCC
Q 020299 164 GYTKAIGVSNFS---CKKLGDILATA-KIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 164 Gkir~iGvS~~~---~~~l~~~~~~~-~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
|+-+-+-+ |.+ .+++.+=.+.+ ......+++.++..--. ..+.+.|++.++.+.++-.+.+
T Consensus 233 G~~~~y~~-NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 233 GEIKGHYL-NATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred CCcceeee-ccCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEecccccc
Confidence 65443333 444 33332211111 12223555665554222 6677778889999999988863
No 262
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=21.36 E-value=1.7e+02 Score=24.12 Aligned_cols=34 Identities=21% Similarity=0.603 Sum_probs=25.3
Q ss_pred CCC-ChHHHHHHHHHHHhcCCCCCC---CcEEEEeccCC
Q 020299 62 LYQ-TEQPLGDAIAEALSTGIIKSR---DELFIASKLWC 96 (328)
Q Consensus 62 ~Yg-sE~~lG~al~~~~~~~~~~~R---~~~~I~tK~~~ 96 (328)
.+| +...+.+|...+.++|++ +| ++++|++-+|.
T Consensus 79 ~fGpaQ~AVAkAVadsveegii-p~e~~dd~vvi~svfv 116 (170)
T COG1795 79 IFGPAQAAVAKAVADSVEEGII-PREQADDVVVIVSVFV 116 (170)
T ss_pred hhcHHHHHHHHHHHHHHHhcCC-ChhHhcCEEEEEEeEe
Confidence 345 677788888888888887 55 56888888864
No 263
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.31 E-value=6e+02 Score=23.82 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHcCC----cceEEecCCC--hhHHHHHHHhCC-CCCeeeccccCcccc------c----HHHHHHHH
Q 020299 149 DFKSVWEAMEECQNLGY----TKAIGVSNFS--CKKLGDILATAK-IPPAANQVEMNPLWQ------Q----NKLREFCK 211 (328)
Q Consensus 149 ~~~~~~~~L~~l~~~Gk----ir~iGvS~~~--~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~l~~~~~ 211 (328)
.++++++++.++.++.. |+++=+.+++ .+++.++.+..+ ....++-++||+... . ..+.+..+
T Consensus 228 ~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 307 (343)
T PRK14468 228 SIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLE 307 (343)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 57899999987776643 3455555443 555666555543 344677778888642 1 24556677
Q ss_pred HcCCeEEEeccCCC
Q 020299 212 AKDIQLAAYAPLGA 225 (328)
Q Consensus 212 ~~gi~v~a~~pl~~ 225 (328)
++|+.+......|.
T Consensus 308 ~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 308 RRGVPVSVRWSRGR 321 (343)
T ss_pred HCCCeEEEeCCCCc
Confidence 88999998887754
No 264
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.20 E-value=1.9e+02 Score=21.72 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=35.2
Q ss_pred cCCChhHHHHHHHhCCCCCeeeccccCcc---cccHHHHHHHHHcCCeEEEeccCCC
Q 020299 172 SNFSCKKLGDILATAKIPPAANQVEMNPL---WQQNKLREFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 172 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~pl~~ 225 (328)
|.++...+.++++...+ +++|+...-+ ..-..+.++|+++|+.+...+. ..
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 45677788888886544 4666654433 2236889999999999999887 44
No 265
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=21.01 E-value=7e+02 Score=23.44 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=35.2
Q ss_pred cceEEec--CCC---hhHHHHHHHhCC----CCC-eeeccccCcccccHHHHHHHHHcCCeEEEeccCC
Q 020299 166 TKAIGVS--NFS---CKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 166 ir~iGvS--~~~---~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 224 (328)
|+.|-+. +.+ ++++.++++... +.+ .-+-++.||-.-..+.++..++.|+.-+..++-.
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS 128 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQS 128 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 5555443 333 467777765532 222 1233345555555789999999998877766654
No 266
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.95 E-value=7.6e+02 Score=24.63 Aligned_cols=97 Identities=11% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC----------CcceEEecC
Q 020299 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG----------YTKAIGVSN 173 (328)
Q Consensus 104 i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G----------kir~iGvS~ 173 (328)
-+..+-+.|.++|+++|++-+ |... .+..++++.+.+.+ ..+-.+++.
T Consensus 107 eKi~Ia~~L~~~GVd~IEvG~---Pa~s-------------------~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R 164 (503)
T PLN03228 107 QKLEIARQLAKLRVDIMEVGF---PGSS-------------------EEEFEAVKTIAKTVGNEVDEETGYVPVICGIAR 164 (503)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CCCC-------------------HHHHHHHHHHHHhcccccccccccceEEeeecc
Confidence 345566679999999988844 4321 12233344444332 133446666
Q ss_pred CChhHHHHHHHhC---CCCCeeeccccCccccc--------------HHHHHHHHHcCCeEEEecc
Q 020299 174 FSCKKLGDILATA---KIPPAANQVEMNPLWQQ--------------NKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 174 ~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~--------------~~l~~~~~~~gi~v~a~~p 222 (328)
.....++.+++.. +.+-..+-+..+..+.. .+.+++++++|...+.+++
T Consensus 165 ~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 165 CKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred cCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 6666777776642 22212222222222211 4678899999876556555
No 267
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=2.6e+02 Score=24.98 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHH
Q 020299 40 ETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEA 76 (328)
Q Consensus 40 ~~~~~~l~~A~~~Gin~~DTA~~YgsE~~lG~al~~~ 76 (328)
+-.......|.+.|+++||- .+|.+|...=+++.+.
T Consensus 197 d~~~~~~~~a~e~gi~~i~~-gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 197 DLSHHTAHDARELGLSVIDA-GHYATERPGLKALAEL 232 (250)
T ss_pred CCcHHHHHHHHHCCCeEEec-CchHHHHHHHHHHHHH
Confidence 33456777888888888884 4676776655555554
No 268
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.93 E-value=2.9e+02 Score=19.94 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEec
Q 020299 157 MEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 157 L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 221 (328)
++++++.|++- +| ..+..++++..+...+++--..++ .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 34555565431 22 345555555555444443333333 122567788888888887655
No 269
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.83 E-value=4.2e+02 Score=23.70 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred eeeCCcCCCCChhHHHHHHHHH-HHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC---------
Q 020299 28 GLGTAASPFSGSETTKLAILEA-MKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--------- 97 (328)
Q Consensus 28 glG~~~~~~~~~~~~~~~l~~A-~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~--------- 97 (328)
|||.|.+| ++++.-.+|..| +.+|. +.|....+-+.++.. ....|-|-..-+.+
T Consensus 13 ~fG~w~~g--~D~~lmp~IssANIACG~-------HAGDp~~M~~tv~lA-------~~~gV~IGAHPgypD~~gFGRR~ 76 (246)
T PRK05406 13 SFGAWKMG--DDEALLPLVTSANIACGF-------HAGDPAVMRRTVRLA-------KENGVAIGAHPGYPDLEGFGRRN 76 (246)
T ss_pred CCCCCCCC--CHHHHHHHhhhHHHhccc-------cCCCHHHHHHHHHHH-------HHcCCeEccCCCCCccCCCCCCC
Confidence 78999875 456666777776 46664 667777777777766 34455555554322
Q ss_pred -CCChhhHHHHHHHHHHHhC
Q 020299 98 -DAHRELVVPALQKSLENLQ 116 (328)
Q Consensus 98 -~~~~~~i~~~l~~sL~~Lg 116 (328)
+.+++.+...+...+..|.
T Consensus 77 m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 77 MDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 3578888888777666663
No 270
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.77 E-value=2.5e+02 Score=22.92 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHH--cCCcceEEecCCCh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTKAIGVSNFSC 176 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvS~~~~ 176 (328)
.+.+.+.+.+.+--+.+|++ ++.+|=. .-.++++.+.+..+ +|.|-.=|.-+|+.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-v~~~QSN----------------------~EGelId~I~~a~~~~dgiiINpga~THtS 82 (146)
T PRK05395 26 TTLADIEALLEEEAAELGVE-LEFFQSN----------------------HEGELIDRIHEARDGADGIIINPGAYTHTS 82 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC----------------------cHHHHHHHHHhcccCCcEEEECchHHHHHH
Confidence 35688999999988899964 6777632 14577888887753 45555557777787
Q ss_pred hHHHHHHHhCCCCCeeeccccCcccccH
Q 020299 177 KKLGDILATAKIPPAANQVEMNPLWQQN 204 (328)
Q Consensus 177 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~ 204 (328)
-.+..++....++ ++.++.+..+.++
T Consensus 83 iAl~DAl~~~~~P--~VEVHiSNi~aRE 108 (146)
T PRK05395 83 VALRDALAAVSIP--VIEVHLSNIHARE 108 (146)
T ss_pred HHHHHHHHcCCCC--EEEEecCCccccc
Confidence 8888888877766 6777777665543
No 271
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.74 E-value=4.5e+02 Score=21.15 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHH-HHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 020299 43 KLAILE-AMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (328)
Q Consensus 43 ~~~l~~-A~~~Gin~~DTA~~YgsE~~lG~al~~~~~~~~~~~R~~~~I~tK 93 (328)
..++.. .-+.|++..+.....-..+.+-++|++... + .+.+++|+|=
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~---~~~DlVittG 69 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWAD-E---DGVDLILTTG 69 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh-c---CCCCEEEECC
Confidence 334444 447898877665555567778888876532 1 2678999984
No 272
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.65 E-value=2.7e+02 Score=30.42 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=38.4
Q ss_pred eccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEE
Q 020299 92 SKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (328)
Q Consensus 92 tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 170 (328)
.|+.+.-..++.+++-+ ..||-|||.+=-.|.-+ ++..+++...|++|.+-++=+.++
T Consensus 242 ~k~nptllg~~~~r~~~----d~~g~~~~~~~~~~f~~-----------------dl~~~~a~~m~~~l~~~~~~~~~~ 299 (1019)
T PRK09853 242 VKLNPTLLGYERVREIL----DKMGFDYIGLKEEHFDH-----------------DLQYTDAVEMLERLMALAKEKGLG 299 (1019)
T ss_pred EeeCcccccHHHHHHHH----HhcCCceEecchhhccc-----------------ccchhHHHHHHHHHHHHHHHcCce
Confidence 46666666667665554 57999999876666532 244777888888887766555443
No 273
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.56 E-value=5.6e+02 Score=22.81 Aligned_cols=36 Identities=6% Similarity=0.032 Sum_probs=19.9
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCCeEeCCCCCC
Q 020299 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ 64 (328)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg 64 (328)
|++...+..+++...++++.+.+.|+..|=-++.+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G 167 (268)
T cd07940 132 FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVG 167 (268)
T ss_pred EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 444433334555566666666666666665555555
No 274
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.56 E-value=3.5e+02 Score=24.61 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEecCCChhHHHHH
Q 020299 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (328)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 182 (328)
..++.+.-.+.-++ ..++++|..|...-+ .....++|+.|.+++++|. +.|=+|+|..+.++.+
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLD-------------p~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~ 203 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLD-------------PESRREIWELLRELAKEGG-VTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCC-------------HHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHh
Confidence 45555555555555 458899988865432 2347789999999999997 7889999999998877
Q ss_pred HH
Q 020299 183 LA 184 (328)
Q Consensus 183 ~~ 184 (328)
.+
T Consensus 204 ~d 205 (293)
T COG1131 204 CD 205 (293)
T ss_pred CC
Confidence 44
No 275
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=20.52 E-value=28 Score=27.84 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=22.0
Q ss_pred cCCHHHHHHhhcCCCCCCccCcccccCCCCchhhhccc
Q 020299 287 ELTDEETKKISDIPQSRGCLGEDYISANGPIKTIEELW 324 (328)
Q Consensus 287 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
.+..+..+++.++....+..-.... .++||+++|+|-
T Consensus 54 diN~A~~~el~~lpGigP~~A~~IV-~nGpf~sveDL~ 90 (132)
T PRK02515 54 DLNNSSVRAFRQFPGMYPTLAGKIV-KNAPYDSVEDVL 90 (132)
T ss_pred cCCccCHHHHHHCCCCCHHHHHHHH-HCCCCCCHHHHH
Confidence 4555555555555444443333333 389999999974
No 276
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.52 E-value=3.9e+02 Score=25.94 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHcCCcceEEecCCChhHHHHHHHhCC------CCCeeeccccCcccc--cHHHHHHHHHcCCeEEEecc
Q 020299 156 AMEECQNLGYTKAIGVSNFSCKKLGDILATAK------IPPAANQVEMNPLWQ--QNKLREFCKAKDIQLAAYAP 222 (328)
Q Consensus 156 ~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~------~~~~~~q~~~~~~~~--~~~l~~~~~~~gi~v~a~~p 222 (328)
-...+-+.|-+.++|..+.+++++++.++..+ -++-+|-+ .++-.+ +.++++.+.++||.++..+.
T Consensus 30 LVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 30 LVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 34455678999999999999999887766553 23344432 222222 25789999999998877664
No 277
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.51 E-value=8.2e+02 Score=24.27 Aligned_cols=68 Identities=7% Similarity=-0.005 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHHHHcCCcceEEec-----C-----CChhHHHHHHHhCC-CCC--eeeccccCcccccHHHHHHHHH
Q 020299 146 LPMDFKSVWEAMEECQNLGYTKAIGVS-----N-----FSCKKLGDILATAK-IPP--AANQVEMNPLWQQNKLREFCKA 212 (328)
Q Consensus 146 ~~~~~~~~~~~L~~l~~~Gkir~iGvS-----~-----~~~~~l~~~~~~~~-~~~--~~~q~~~~~~~~~~~l~~~~~~ 212 (328)
.....+++++.++.++++| ++.|-+. . .+...+.++++... ++. .+-....++..-..++++..++
T Consensus 184 rsr~~e~Vv~Ei~~l~~~g-~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~ 262 (502)
T PRK14326 184 KDRRPGDILAEVQALVDEG-VLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAE 262 (502)
T ss_pred ccCCHHHHHHHHHHHHHCC-CceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHh
Confidence 3456899999999999997 5665321 1 12334445554332 211 1222222333334789999888
Q ss_pred cC
Q 020299 213 KD 214 (328)
Q Consensus 213 ~g 214 (328)
.|
T Consensus 263 ~g 264 (502)
T PRK14326 263 TP 264 (502)
T ss_pred cC
Confidence 76
No 278
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.38 E-value=4.5e+02 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.3
Q ss_pred cceEEec-CCChhHHHHHHHhCCCCCeeeccccC
Q 020299 166 TKAIGVS-NFSCKKLGDILATAKIPPAANQVEMN 198 (328)
Q Consensus 166 ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~~~~ 198 (328)
++.+||. |-+++.+.++++.+. ++++|++-+
T Consensus 307 v~~VgVfv~~~~~~i~~i~~~~~--lD~vQLHG~ 338 (454)
T PRK09427 307 LRYVGVFRNADIEDIVDIAKQLS--LAAVQLHGD 338 (454)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcC--CCEEEeCCC
Confidence 8899987 677888888887664 568998764
No 279
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=20.38 E-value=4e+02 Score=24.94 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEEe-cCCC
Q 020299 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV-SNFS 175 (328)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv-S~~~ 175 (328)
...+++.+.-+++|.-+==+|++.+-+ .-+|-+. -..+++.++++++..-.=++.+|+ .||.
T Consensus 103 ~~arqlse~A~~~Gk~h~VlLmVd~~D-lreG~~~----------~~~~~l~~~V~eI~~lkGi~~vGlgTnF~ 165 (353)
T COG3457 103 DTARQLSEAAVRMGKVHDVLLMVDYGD-LREGQWG----------FLIEDLEETVEEIQQLKGIHLVGLGTNFP 165 (353)
T ss_pred HHHHHHHHHHHHhCcceeEEEEEEccc-ccCcchh----------hHHHHHHHHHHHHhcCCCceEEeeecccc
Confidence 466888999999996553344444433 2222211 123556666666666667889999 7775
No 280
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.29 E-value=7.1e+02 Score=23.21 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHHcCCCeEeCCCCCC-----------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHH
Q 020299 38 GSETTKLAILEAMKLGYRHFDTATLYQ-----------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (328)
Q Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-----------sE~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 106 (328)
+.++..+.+..+.+.|++.|=.--... .+...=+++++. -.+++.|..-.. ..++.+..
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~-------~g~~~~l~vDaN-~~~~~~~A-- 192 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA-------VGPDIDIGVDFH-GRVSKPMA-- 192 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh-------hCCCCEEEEECC-CCCCHHHH--
Confidence 455566677777889999886432210 111122344443 123444554442 22344332
Q ss_pred HHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcc-eEEecCCChhHHHHHHHh
Q 020299 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILAT 185 (328)
Q Consensus 107 ~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~ 185 (328)
.+-++.|. .+++.++-.|-.. +-++.+.+|+++.-+. +.|=|.++...+..+++.
T Consensus 193 --~~~~~~l~--~~~i~~iEeP~~~--------------------~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~ 248 (352)
T cd03325 193 --KDLAKELE--PYRLLFIEEPVLP--------------------ENVEALAEIAARTTIPIATGERLFSRWDFKELLED 248 (352)
T ss_pred --HHHHHhcc--ccCCcEEECCCCc--------------------cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh
Confidence 22233343 2456666666421 2367788888776555 566777888888888776
Q ss_pred CCCCCeeeccccCcc---cccHHHHHHHHHcCCeEEEec
Q 020299 186 AKIPPAANQVEMNPL---WQQNKLREFCKAKDIQLAAYA 221 (328)
Q Consensus 186 ~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~ 221 (328)
..+ +++|.....+ ..-.++.+.|+++|+.++.++
T Consensus 249 ~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 249 GAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 544 3666664433 223688999999999988655
No 281
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.27 E-value=6.1e+02 Score=22.45 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred CChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcC-CcceEEecCCChh
Q 020299 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCK 177 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~ 177 (328)
++.+ -+..+-+.|.++|+++|++-+ |.. .+.-++.++.+.+.+ .++..+.+..+.+
T Consensus 17 ~~~~-~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~ 73 (259)
T cd07939 17 FSRE-EKLAIARALDEAGVDEIEVGI---PAM-------------------GEEEREAIRAIVALGLPARLIVWCRAVKE 73 (259)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEec---CCC-------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence 4444 445555669999999999852 311 112245666666643 4777777777788
Q ss_pred HHHHHHHhCCCCCeeeccccCcccc--------------cHHHHHHHHHcCCeEEE
Q 020299 178 KLGDILATAKIPPAANQVEMNPLWQ--------------QNKLREFCKAKDIQLAA 219 (328)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~--------------~~~l~~~~~~~gi~v~a 219 (328)
.++.+.+. +++..-+-++.|..+. -.+.+++|+++|+.+..
T Consensus 74 ~v~~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 74 DIEAALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 88877764 3432222222332211 13678899999987653
No 282
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.13 E-value=6.5e+02 Score=23.74 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHhc-CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccC
Q 020299 65 TEQPLGDAIAEALST-GIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKE 143 (328)
Q Consensus 65 sE~~lG~al~~~~~~-~~~~~R~~~~I~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 143 (328)
+-..+-++++..... |+-=....+.|+|-.. ++. ++ -|...+...+++ -||.++........ ...
T Consensus 170 n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~-----~~~----i~-~L~~~~l~~L~i-SLha~~~e~r~~i~---p~~ 235 (354)
T PRK14460 170 NLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI-----EKG----LR-ELGESGLAFLAV-SLHAPNQELRERIM---PKA 235 (354)
T ss_pred CHHHHHHHHHHHhhhhccCCCCCeEEEECCCC-----hHH----HH-HHHhCCCcEEEE-eCCCCCHHHHHHhc---Ccc
Confidence 445566777754211 2100123677877532 222 23 344556555553 57777543210000 000
Q ss_pred CCCCccHHHHHHHHHHHHHc-C---CcceEEec--CCChhHHHHHHHhCC-CCCeeeccccCccccc----------HHH
Q 020299 144 DFLPMDFKSVWEAMEECQNL-G---YTKAIGVS--NFSCKKLGDILATAK-IPPAANQVEMNPLWQQ----------NKL 206 (328)
Q Consensus 144 ~~~~~~~~~~~~~L~~l~~~-G---kir~iGvS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l 206 (328)
. ...++++++++..+..+ | +|+++=+. |-+.+.++++.+... .+..++-++||+.... ..+
T Consensus 236 ~--~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f 313 (354)
T PRK14460 236 A--RWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAF 313 (354)
T ss_pred c--cCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHH
Confidence 0 13578888888876443 2 24444444 344556666655543 3456788889876321 356
Q ss_pred HHHHHHcCCeEEEeccCCC
Q 020299 207 REFCKAKDIQLAAYAPLGA 225 (328)
Q Consensus 207 ~~~~~~~gi~v~a~~pl~~ 225 (328)
.+..+++|+.+......|.
T Consensus 314 ~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 314 EKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred HHHHHHCCCeEEEeCCCCC
Confidence 6778888999988887754
No 283
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.12 E-value=2.6e+02 Score=21.70 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCcceEEecCCChhHHHHHHHhCCCCCee
Q 020299 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAA 192 (328)
Q Consensus 150 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~~ 192 (328)
.+.+.+.++.+.+.|+--=+|.+.|+.++++++.+.++.-|.+
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl 119 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVL 119 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEE
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEE
Confidence 5677888999999999999999999999998888876643443
No 284
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.07 E-value=7.2e+02 Score=23.21 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred cceEEecCCChhHHHHHHHhCCCCCeeeccccCccccc---HHHHHHHHHcCCeEEEeccCC
Q 020299 166 TKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLG 224 (328)
Q Consensus 166 ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~ 224 (328)
++..-+...+.+.+++++.. +.+..++..+.||.... +++.+.|+++|+.++.=..++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44445554567777766543 33444555677776443 688999999999988766653
No 285
>PRK10508 hypothetical protein; Provisional
Probab=20.06 E-value=2.3e+02 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.8
Q ss_pred CChhhHHHHHHHHHHHhCCCce
Q 020299 99 AHRELVVPALQKSLENLQLEYI 120 (328)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~i 120 (328)
.+++.+.+.|++..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 4789999999999999998887
No 286
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=20.04 E-value=3.3e+02 Score=20.84 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=30.6
Q ss_pred ecCCChhHHHHHHHhCCCCCeeeccccCcccccHHHHHHHHHcCCeEEEeccC
Q 020299 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (328)
Q Consensus 171 vS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 223 (328)
++..+.+.++.++... .+..++=.--+......++.++++++||++..+..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 3344566666665532 222233222333333578889999999999887654
No 287
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.01 E-value=2.8e+02 Score=30.34 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=38.2
Q ss_pred eccCCCCCChhhHHHHHHHHHHHhCCCceeEEEeecCCCCCCCCCCCCCccCCCCCccHHHHHHHHHHHHHcCCcceEE
Q 020299 92 SKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (328)
Q Consensus 92 tK~~~~~~~~~~i~~~l~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 170 (328)
.|+.+.-..++.+++-+ ..||-|||.+=-.|.-+ ++..+++...|++|.+-++=+.++
T Consensus 240 ~k~nptllg~~~~r~~~----~~~g~~~~~~~~~~f~~-----------------dl~~~~~~~~~~~l~~~~~~~~~~ 297 (1012)
T TIGR03315 240 VKLNPTLLGYKFVRDTM----DEMGFDYIVLKEESFSH-----------------DLQYEDAVAMLQRLQLLAKEKGLG 297 (1012)
T ss_pred EeeCcccccHHHHHHHH----HhcCCceEecchhhccc-----------------ccchhHHHHHHHHHHHHHHHcCCe
Confidence 46666666667665554 57999999876666532 244777778888877665555443
Done!