Query 020300
Match_columns 328
No_of_seqs 140 out of 1518
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 2.3E-57 5E-62 449.0 31.0 316 13-328 148-463 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 3.3E-56 7.2E-61 417.9 25.4 262 2-328 100-367 (390)
3 PLN02865 galactokinase 100.0 1.5E-50 3.2E-55 392.7 28.6 255 13-328 129-394 (423)
4 PTZ00290 galactokinase; Provis 100.0 1.5E-50 3.2E-55 396.3 26.1 273 12-328 132-434 (468)
5 PRK05322 galactokinase; Provis 100.0 4.8E-47 1E-51 367.4 28.8 252 13-328 111-365 (387)
6 PRK05101 galactokinase; Provis 100.0 4.2E-47 9.1E-52 367.4 28.0 247 13-328 111-360 (382)
7 TIGR00131 gal_kin galactokinas 100.0 2.5E-46 5.5E-51 362.9 25.3 253 13-328 109-364 (386)
8 PRK00555 galactokinase; Provis 100.0 1.6E-45 3.4E-50 354.1 27.3 248 12-328 89-340 (363)
9 PRK03817 galactokinase; Provis 100.0 1E-40 2.2E-45 320.0 27.3 244 12-328 84-328 (351)
10 KOG0631 Galactokinase [Carbohy 100.0 1.5E-41 3.2E-46 324.0 19.2 312 13-328 141-458 (489)
11 COG1577 ERG12 Mevalonate kinas 100.0 6.9E-34 1.5E-38 264.6 20.6 213 11-326 80-294 (307)
12 PLN02677 mevalonate kinase 100.0 1.1E-32 2.4E-37 265.5 21.5 215 12-326 127-364 (387)
13 COG2605 Predicted kinase relat 100.0 8.8E-32 1.9E-36 242.5 21.4 211 14-326 89-312 (333)
14 PTZ00298 mevalonate kinase; Pr 100.0 2.6E-31 5.6E-36 252.7 24.7 214 13-328 93-310 (328)
15 TIGR00549 mevalon_kin mevalona 100.0 1.9E-31 4.1E-36 247.1 21.1 195 14-311 78-273 (273)
16 TIGR01220 Pmev_kin_Gr_pos phos 100.0 2.6E-30 5.7E-35 248.3 23.4 214 12-326 98-344 (358)
17 PRK13412 fkp bifunctional fuco 100.0 3E-29 6.4E-34 261.3 23.4 213 13-326 725-950 (974)
18 PRK03926 mevalonate kinase; Pr 100.0 1.7E-28 3.7E-33 230.7 23.8 208 13-327 74-282 (302)
19 KOG1511 Mevalonate kinase MVK/ 100.0 1.7E-28 3.6E-33 225.9 19.6 219 8-326 121-358 (397)
20 PLN02451 homoserine kinase 99.9 6.7E-22 1.5E-26 190.4 23.3 202 13-327 133-341 (370)
21 TIGR01219 Pmev_kin_ERG8 phosph 99.9 2E-21 4.4E-26 189.9 23.1 239 12-326 111-431 (454)
22 COG0083 ThrB Homoserine kinase 99.9 3.1E-21 6.8E-26 178.4 21.9 184 15-315 78-263 (299)
23 PRK01212 homoserine kinase; Pr 99.9 6.9E-21 1.5E-25 179.0 22.6 198 13-328 80-280 (301)
24 TIGR01920 Shik_kin_archae shik 99.9 8.3E-21 1.8E-25 175.0 21.9 99 13-115 63-164 (261)
25 TIGR00191 thrB homoserine kina 99.9 5E-20 1.1E-24 173.4 21.4 187 13-318 79-270 (302)
26 PRK00128 ipk 4-diphosphocytidy 99.9 1.2E-20 2.6E-25 176.2 15.9 188 13-327 83-272 (286)
27 PRK01123 shikimate kinase; Pro 99.8 4.8E-19 1E-23 165.2 20.9 100 13-117 74-176 (282)
28 PRK03188 4-diphosphocytidyl-2- 99.8 4.8E-19 1E-23 166.5 19.4 192 13-326 82-275 (300)
29 PTZ00299 homoserine kinase; Pr 99.8 6.9E-19 1.5E-23 167.1 18.9 199 13-327 81-299 (336)
30 PRK02534 4-diphosphocytidyl-2- 99.8 2.6E-19 5.6E-24 169.3 15.7 203 13-327 85-290 (312)
31 TIGR00154 ispE 4-diphosphocyti 99.8 9.4E-18 2E-22 157.2 17.4 95 12-118 84-178 (293)
32 PRK14616 4-diphosphocytidyl-2- 99.8 1E-17 2.3E-22 156.5 17.5 191 13-328 82-274 (287)
33 PRK14614 4-diphosphocytidyl-2- 99.8 6.9E-18 1.5E-22 157.2 14.9 95 13-119 84-178 (280)
34 PRK14608 4-diphosphocytidyl-2- 99.7 3.7E-17 7.9E-22 153.0 16.8 94 13-118 89-182 (290)
35 TIGR00144 beta_RFAP_syn beta-R 99.7 2.2E-16 4.7E-21 149.9 21.4 197 13-326 81-300 (324)
36 PRK14612 4-diphosphocytidyl-2- 99.7 6.4E-17 1.4E-21 150.4 14.2 90 13-118 82-171 (276)
37 PRK14615 4-diphosphocytidyl-2- 99.7 2.7E-16 5.8E-21 147.6 17.1 95 13-119 87-182 (296)
38 PRK14609 4-diphosphocytidyl-2- 99.7 1.6E-16 3.6E-21 147.0 14.4 94 13-118 81-175 (269)
39 PRK14611 4-diphosphocytidyl-2- 99.7 5.9E-16 1.3E-20 143.9 18.1 94 13-118 79-172 (275)
40 PRK14613 4-diphosphocytidyl-2- 99.7 9.6E-16 2.1E-20 143.9 18.4 193 13-328 92-287 (297)
41 COG1907 Predicted archaeal sug 99.6 8.7E-14 1.9E-18 126.4 18.4 198 11-319 68-280 (312)
42 PF00288 GHMP_kinases_N: GHMP 99.6 9.8E-15 2.1E-19 106.8 7.4 67 16-83 1-67 (67)
43 PRK00343 ipk 4-diphosphocytidy 99.5 2E-13 4.4E-18 126.6 15.9 93 13-118 86-178 (271)
44 TIGR01240 mevDPdecarb diphosph 99.5 4.2E-12 9.1E-17 119.4 23.4 204 13-328 84-304 (305)
45 KOG4644 L-fucose kinase [Carbo 99.5 2.5E-13 5.4E-18 130.9 13.5 215 13-324 690-918 (948)
46 PF08544 GHMP_kinases_C: GHMP 99.5 1.1E-13 2.3E-18 105.5 7.5 81 243-328 1-83 (85)
47 PRK00650 4-diphosphocytidyl-2- 99.5 1.7E-12 3.8E-17 120.6 16.5 92 13-116 79-170 (288)
48 PRK14610 4-diphosphocytidyl-2- 99.4 5.4E-12 1.2E-16 117.8 17.1 89 13-115 83-173 (283)
49 COG1947 IspE 4-diphosphocytidy 99.4 3.4E-12 7.3E-17 117.8 13.6 94 13-118 84-177 (289)
50 COG1685 Archaeal shikimate kin 99.4 4.3E-11 9.3E-16 108.0 18.7 99 13-115 69-170 (278)
51 PRK05905 hypothetical protein; 99.2 4.4E-10 9.6E-15 103.2 13.0 92 13-118 85-177 (258)
52 COG3890 ERG8 Phosphomevalonate 99.0 5.2E-08 1.1E-12 88.3 17.4 86 26-115 107-202 (337)
53 PRK04181 4-diphosphocytidyl-2- 99.0 3E-09 6.4E-14 97.9 9.8 94 13-119 85-179 (257)
54 PLN02407 diphosphomevalonate d 99.0 1.9E-07 4.1E-12 88.4 21.7 61 15-84 104-167 (343)
55 KOG1537 Homoserine kinase [Ami 98.9 7.4E-09 1.6E-13 93.0 9.2 203 15-327 95-330 (355)
56 COG4542 PduX Protein involved 98.9 1.3E-07 2.9E-12 84.8 17.0 90 13-115 82-172 (293)
57 KOG4519 Phosphomevalonate kina 98.6 7.1E-07 1.5E-11 82.8 14.0 256 22-325 146-431 (459)
58 COG3407 MVD1 Mevalonate pyroph 98.6 1.3E-05 2.9E-10 75.5 21.8 63 13-84 89-151 (329)
59 COG1829 Predicted archaeal kin 98.6 3.2E-06 7E-11 77.0 16.9 92 14-114 74-170 (283)
60 KOG2833 Mevalonate pyrophospha 98.5 1.9E-05 4.1E-10 73.1 20.3 61 15-84 106-166 (395)
61 PF03460 NIR_SIR_ferr: Nitrite 68.6 11 0.00025 26.7 4.5 48 277-326 21-68 (69)
62 COG2221 DsrA Dissimilatory sul 40.4 39 0.00085 32.0 4.1 48 277-326 42-89 (317)
63 COG0024 Map Methionine aminope 26.2 1.8E+02 0.0039 26.8 5.9 51 257-307 14-67 (255)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=2.3e-57 Score=449.02 Aligned_cols=316 Identities=74% Similarity=1.098 Sum_probs=282.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.||++.|.|+||+|+|||||||++||++.|++++++.++++++++++|+++|+++|.++|+|||+++++|+.|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 59999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~ 172 (328)
+++.++++++|.++.||+++|+++++|+.++++.||.|++||+.|+++|++++++++++....+++|||+.+++..+.+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999899999999999999999999999999999999999999998876533222467899997655444555
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 020300 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (328)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~ 252 (328)
....++...+++.+.+.+|+.++++..++..+++++++.++..+++...+++.+++|+.|+++|+.||.+++++|+++++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 55566778888888888999999998877666666656555555555567788999999999999999999999998765
Q ss_pred chHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 253 ~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
++.+++.||++|+++|.++|++|++|||++|.|++++++.|++|+||||||||||+++|++++.++++++.+.+.|
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y 463 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKF 463 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 5556999999999999999999999999999999999999999999999999999999999988999999998877
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-56 Score=417.88 Aligned_cols=262 Identities=34% Similarity=0.510 Sum_probs=231.3
Q ss_pred CCceeeeee---cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhh
Q 020300 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (328)
Q Consensus 2 ~~~~~~~~~---~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~ 77 (328)
||++..+.. .++|+++.|.|+||.|+|||||||+.|+++.++.+++++++++.+|+++|+++|+ |+|++||+|||+
T Consensus 100 kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~ 179 (390)
T COG0153 100 KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQL 179 (390)
T ss_pred HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHH
Confidence 444444443 5579999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred HHhhhccceEEEeecCCceEEEeecCCC-ceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 020300 78 ISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (328)
Q Consensus 78 ~~~~gg~~~~~~id~~~~~~~~~~~~~~-~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~ 156 (328)
++.+|+.++++++||++++.+++|+|.+ +.|||+||++ |+.+++++||.|+.||+.|++.|++..
T Consensus 180 ~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~~~----------- 245 (390)
T COG0153 180 ASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGVSI----------- 245 (390)
T ss_pred HHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHHhh-----------
Confidence 9999999999999999999999999986 9999999999 677899999999999999999998821
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhH
Q 020300 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (328)
Q Consensus 157 ~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E 236 (328)
+.|+|+... ++.+... .. .. .+.+++|+.|+++|
T Consensus 246 ~~L~d~~~~-----------------------------~~~~~~~-----~i-----------~~-~~~~~rRa~hvv~E 279 (390)
T COG0153 246 KSLRDVTDE-----------------------------EFAALQA-----EI-----------EV-DPKIARRARHVVTE 279 (390)
T ss_pred hhhhhcCHH-----------------------------HHHhhhh-----hc-----------cc-chHHHHHHHHHHhH
Confidence 367776532 2222111 00 00 13478999999999
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCcEEEEeCcCCcceeEEEEeCC
Q 020300 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKES 315 (328)
Q Consensus 237 ~~r~~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~-~Ga~GakisGaG~GG~v~~L~~~~ 315 (328)
++|+.++++||.++| +.+||+||++||.+||++|+||+||+|+|++++.. .|++|+||||||||||+|+|++.+
T Consensus 280 n~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~ 354 (390)
T COG0153 280 NQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPND 354 (390)
T ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEechh
Confidence 999999999999875 99999999999999999999999999999999986 588999999999999999999999
Q ss_pred cHHHHHHHHHhhC
Q 020300 316 IDSQFILNLKVLF 328 (328)
Q Consensus 316 ~~~~~~~~i~~~y 328 (328)
.++++++.+.+.|
T Consensus 355 ~v~~~~e~v~~~y 367 (390)
T COG0153 355 DVEAVAEAVAEEY 367 (390)
T ss_pred hHHHHHHHHHHhH
Confidence 9999999999877
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=1.5e-50 Score=392.66 Aligned_cols=255 Identities=28% Similarity=0.330 Sum_probs=222.9
Q ss_pred cceeEEEEecC-CCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 13 QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~i-P~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
+||++.|.+++ |+++|||||||++||++.+++.+++..+++++++++|+++|+ ++|.+||+|||+++++|..|+++++
T Consensus 129 ~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~i 208 (423)
T PLN02865 129 QGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFM 208 (423)
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEE
Confidence 69999999999 579999999999999999999999999999999999999997 8899999999999999999999999
Q ss_pred ecCCceEEEeecC-------CCceEEEEecCCcchhhhcc-ccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhh
Q 020300 91 DFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (328)
Q Consensus 91 d~~~~~~~~~~~~-------~~~~~vl~~s~~~~~~~~~~-~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v 162 (328)
||+++.++.+++| .++.|++++|++ +|... ++.||.|+.||+.++++|++++|+.. ..++||++
T Consensus 209 Df~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~-----~~~~Lr~~ 280 (423)
T PLN02865 209 DCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGNDE-----LEPLLCNV 280 (423)
T ss_pred EccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCCcc-----chhhhhcC
Confidence 9999887788876 368899999998 45555 78999999999999999998876421 12356654
Q ss_pred hhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHH
Q 020300 163 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (328)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~ 242 (328)
.. +++..... .+ .+.+++|+.|+++|+.||.+
T Consensus 281 ~~-----------------------------~~~~~~~~-~l------------------~~~l~~Ra~Hv~~E~~Rv~~ 312 (423)
T PLN02865 281 EP-----------------------------EVYEAHKC-KL------------------EAVLARRAEHYFSENMRVIK 312 (423)
T ss_pred CH-----------------------------HHHHHHHh-hc------------------CHHHHHHHHHHHHHHHHHHH
Confidence 32 11211110 00 12368999999999999999
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCcEEEEeCcCCcceeEEEEeCCcHHHHH
Q 020300 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFI 321 (328)
Q Consensus 243 ~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~-~Ga~GakisGaG~GG~v~~L~~~~~~~~~~ 321 (328)
++++|+++| ++.||++|+++|.++|++|++|||++|.|++.+++ .|++|+||||||||||+++|++.+.+++++
T Consensus 313 ~~~al~~~d-----~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~ 387 (423)
T PLN02865 313 GVEAWASGN-----LEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAA 387 (423)
T ss_pred HHHHHHhCC-----HHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHH
Confidence 999999875 99999999999999999999999999999999998 699999999999999999999999999999
Q ss_pred HHHHhhC
Q 020300 322 LNLKVLF 328 (328)
Q Consensus 322 ~~i~~~y 328 (328)
+++.+.|
T Consensus 388 ~~v~~~Y 394 (423)
T PLN02865 388 SFVRDEY 394 (423)
T ss_pred HHHHHHH
Confidence 9999887
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.5e-50 Score=396.34 Aligned_cols=273 Identities=21% Similarity=0.291 Sum_probs=217.0
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHhcc-ccCCc
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV--------------------EVPKKEIAQLTCECEQ-FIGTQ 70 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~--------------------~l~~~~l~~la~~~E~-~~g~~ 70 (328)
++||++.|.++||+|+|||||||++||++.|++.+++. +.+..+|+.+|+++|+ ++|.|
T Consensus 132 ~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~ 211 (468)
T PTZ00290 132 LQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVN 211 (468)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCC
Confidence 47999999999999999999999999999999998732 1234889999999998 89999
Q ss_pred CCCchhhHHhhhccceEEEeecCCceEEEeecC----CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhC
Q 020300 71 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (328)
Q Consensus 71 ~G~~D~~~~~~gg~~~~~~id~~~~~~~~~~~~----~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~ 146 (328)
||+|||+++++|+.|+++++||+++.+++++++ .++.|+|+||++++++..+++..||.|+.||+.+++.|++..
T Consensus 212 cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~- 290 (468)
T PTZ00290 212 VGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHR- 290 (468)
T ss_pred cchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999875 479999999999776555555699999999999999996542
Q ss_pred CCchhhhhccc-cchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHH-HHHHhhhhhhhhhcCCCchhHHhhhhhH
Q 020300 147 MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDI-EKITEEKLTSIFANSSSSLDVLNAAKQY 224 (328)
Q Consensus 147 ~~~~~~~~~~~-~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
. +..+ +|||+.. +..+|+.++. .... ..+.+.+ .+
T Consensus 291 l------~~~~~~Lrd~~~----------------------~~~~~~~~~~~~~~~--------~~~~~~l-------~~ 327 (468)
T PTZ00290 291 Y------RGKPFTFSDLVR----------------------NPKKYTFDGDVVAFM--------ESCKPLM-------TP 327 (468)
T ss_pred c------cchhhhHHHhhh----------------------ccccccccccHHHHH--------HHhhhcC-------CH
Confidence 0 0001 2333210 1112322210 1100 0000001 12
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHhcCC--CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCcEEEEeC
Q 020300 225 KLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTG 301 (328)
Q Consensus 225 ~~~~r~~~~v~E~~r~~~~~~al~~~~--~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~-~~Ga~GakisG 301 (328)
.+++|++|+++|+.||.+++++|+... .+++++..||++|++||.+||++|+||||++|.|++.+. ..|++|+||||
T Consensus 328 ~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTG 407 (468)
T PTZ00290 328 GEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMG 407 (468)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEec
Confidence 478999999999999999999996311 123469999999999999999999999999999999764 57999999999
Q ss_pred cCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 302 AGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 302 aG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
||||||+++|++++.++++++++.+.|
T Consensus 408 aG~GGc~i~Lv~~~~~~~~~~~v~~~y 434 (468)
T PTZ00290 408 GGFGGCIILLLKKNAVDRVVAHVREKF 434 (468)
T ss_pred CCCceEEEEEechhhHHHHHHHHHHHH
Confidence 999999999999999999999998876
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=4.8e-47 Score=367.43 Aligned_cols=252 Identities=32% Similarity=0.434 Sum_probs=221.9
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+||++.|.|+||+|+|||||||++||++.|++++++.++++++|+++|+.+|+ ++|.|||+|||+++++||.++++++|
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 79999999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cCCceEEEeecCC-CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
++++..+.+++|. ++.|+++||++ +|.+.++.||.|+.||+.+++.+++++++ ++|+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~---------~~l~~~~~------ 252 (387)
T PRK05322 191 CNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI---------KSLGELTE------ 252 (387)
T ss_pred cCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------cchhcCCH------
Confidence 9988888888864 67899999998 56778899999999999999999887643 34555332
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+++..... .+ ..+.+++|+.|++.|+.|+..++.+|.++
T Consensus 253 -----------------------~~~~~~~~-----~~-------------~~~~~~~r~~h~v~e~~r~~~~~~al~~~ 291 (387)
T PRK05322 253 -----------------------EEFDEYSY-----LI-------------KDETLLKRARHAVTENQRTLKAVKALKAG 291 (387)
T ss_pred -----------------------HHHHHHHh-----hc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111110 00 01246899999999999999999999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~-~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++|+++|.+|++.|++++|++|.|++.++ +.|++|+||||||+|||+++|++.+..+++.+.+.+.|
T Consensus 292 d-----~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y 365 (387)
T PRK05322 292 D-----LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAY 365 (387)
T ss_pred C-----HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999999999999999997 57999999999999999999999998999999998876
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=4.2e-47 Score=367.39 Aligned_cols=247 Identities=30% Similarity=0.432 Sum_probs=216.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+||++.|.|+||+|+|||||||++||++.|++++++.++++++|+++|+++|+ ++|.|||.+||+++++||.++++++|
T Consensus 111 ~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d 190 (382)
T PRK05101 111 GGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLID 190 (382)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEE
Confidence 59999999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
+++....++++|.++.|++++|+++ +.+..+.||.|+.||+.+++++... .|+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e~~~A~~~l~~~-------------~l~~~~~------- 247 (382)
T PRK05101 191 CRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQCETAARFFGVK-------------ALRDVTL------- 247 (382)
T ss_pred cCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHHHHHHHHHhChH-------------hhhcCCH-------
Confidence 9998888999998999999999995 4466789999999999999877432 3444221
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
+++..... . -.+.+++|+.|+++|+.|+.+++++|+++|
T Consensus 248 ----------------------~~~~~~~~----~---------------l~~~~~~r~~h~i~E~~rv~~a~~al~~~d 286 (382)
T PRK05101 248 ----------------------EQFNAVAA----E---------------LDPVVAKRARHVITENARTLEAASALAAGD 286 (382)
T ss_pred ----------------------HHHHHHHh----h---------------CCHHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 11111100 0 012467899999999999999999999875
Q ss_pred CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhC-CC-cEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GA-LGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 252 ~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~-Ga-~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
++.||++|+++|.+||+.|++|||++|.|++++++. |+ +|+||||||||||+++|++++.++++++++.+.|
T Consensus 287 -----~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y 360 (382)
T PRK05101 287 -----LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQY 360 (382)
T ss_pred -----HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHH
Confidence 999999999999999988999999999999999995 98 4789999999999999999999999999998876
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=2.5e-46 Score=362.93 Aligned_cols=253 Identities=34% Similarity=0.463 Sum_probs=217.2
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.|+|+|||+++++||.+++++++
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 59999999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cCCceEEEeecCC-CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
++++...++++|. ++.|++++|++++ .+.+..||.|++||+.++++++.+. .++||++....+
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~~~---~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~~~--- 252 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNVKR---TLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNEYF--- 252 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCCcc---ccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHHHH---
Confidence 9998888999997 8999999999954 4667899999999999999986542 124554322100
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
. .+...++. +. +...+|+.|+++|+.||.+++++|+++
T Consensus 253 ---------~--------------~~~~~~~~-~~------------------~~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 253 ---------A--------------RYIARLTK-ML------------------PLVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred ---------h--------------hhHhhHhh-cC------------------HHHHhhHheeehHHHHHHHHHHHHHhC
Confidence 0 00000000 00 124679999999999999999999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH-HhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a-~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++|+++|.+++++|++|+|++|.+++.+ ++.|++|+||||||||||+++|++++.++++.+++.+.|
T Consensus 291 d-----~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y 364 (386)
T TIGR00131 291 D-----FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKY 364 (386)
T ss_pred c-----HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHH
Confidence 4 999999999999999999999999999999875 668999999999999999999999988999999998876
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1.6e-45 Score=354.09 Aligned_cols=248 Identities=27% Similarity=0.386 Sum_probs=215.3
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
+.|+++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.|||.|||+++++||.|+++++
T Consensus 89 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~ 168 (363)
T PRK00555 89 VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLI 168 (363)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEE
Confidence 369999999999999999999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred ecCCceEEEeecCCC---ceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAG---GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (328)
Q Consensus 91 d~~~~~~~~~~~~~~---~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~ 167 (328)
||++..+.++++|.+ +.|++++|+++ +.+....||.|+.+|+.+.+.++. +++|++..
T Consensus 169 d~~~~~~~~v~~~~~~~~~~lvv~~s~~~---~~~~~~~y~~rr~~~~~~~~~~~~-------------~~lr~~~~--- 229 (363)
T PRK00555 169 DFRDLTVRPVAFDPDAAGVVLLLMDSRAR---HRHAGGEYAARRASCERAAADLGV-------------SSLRAVQD--- 229 (363)
T ss_pred EcCCCcEEEeccCCCcCceEEEEEcCCCc---ccccchhhHHHHHHHHHHHHHhCc-------------cchhcCCH---
Confidence 998888888888753 57999999995 456678999999999998876532 23444321
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 020300 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (328)
Q Consensus 168 ~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al 247 (328)
+.+... .. ..++..++|+.|+++|+.|+.+++.+|
T Consensus 230 --------------------------~~~~~~-----~~--------------~~~~~~~~r~~h~~~e~~~v~~~~~al 264 (363)
T PRK00555 230 --------------------------RGLAAL-----GA--------------IADPIDARRARHVLTENQRVLDFAAAL 264 (363)
T ss_pred --------------------------HHHHHH-----Hh--------------cCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00 001245789999999999999999999
Q ss_pred hcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhh
Q 020300 248 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 248 ~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~ 327 (328)
.++| ++.||++|+++|+++|+.|++|+|++|.|++.+++.|++|+||||||||||+++|++.+.++++.+.+.+.
T Consensus 265 ~~gd-----~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~ 339 (363)
T PRK00555 265 ADSD-----FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339 (363)
T ss_pred HcCC-----HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHH
Confidence 9885 99999999999999998899999999999999999999999999999999999999998899999999887
Q ss_pred C
Q 020300 328 F 328 (328)
Q Consensus 328 y 328 (328)
|
T Consensus 340 y 340 (363)
T PRK00555 340 A 340 (363)
T ss_pred H
Confidence 7
No 9
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1e-40 Score=319.99 Aligned_cols=244 Identities=32% Similarity=0.422 Sum_probs=212.1
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+||++.|+|+||+++|||||||+++|++.|++++++.++++++++++|.++|+ +.|.++|++||+++.+|+.+.++++
T Consensus 84 ~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~ 163 (351)
T PRK03817 84 VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFL 163 (351)
T ss_pred CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEE
Confidence 369999999999999999999999999999999999999999999999999997 7899999999999999998888899
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
++.+..+.++++|.++.|++++|+.++ .+....||.|+.+|+.+++.++.. +++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~vv~~sg~~~---~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~------- 220 (351)
T PRK03817 164 DTMTLEYEYVPFPEDYEILVFDTGVKR---ELASSEYNERRQECEEALKILGKK-------------SSKEVT------- 220 (351)
T ss_pred ecCCCceEEEecCCCcEEEEEeCCCcc---ccccchhHHHHHHHHHHHHHhCcc-------------chhcCC-------
Confidence 998877888999989999999999843 455578999999999988877432 222211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
.++... ++ ..+++|+.|+++|+.|+..++.+|.++
T Consensus 221 ----------------------~~~~~~-----l~------------------~~~~~~~~~~v~e~~r~~~~~~al~~~ 255 (351)
T PRK03817 221 ----------------------EEDLSK-----LP------------------PLLRKRAGYVLRENERVLKVRDALKEG 255 (351)
T ss_pred ----------------------HHHHHh-----CC------------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 011000 00 135678999999999999999999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++|+++|.++++.|++++|++|+|++.+++.|++|+||||||||||+++|++++..+++++.+++.|
T Consensus 256 d-----~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~ 328 (351)
T PRK03817 256 D-----IETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328 (351)
T ss_pred C-----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHH
Confidence 5 999999999999999998999999999999999999999999999999999999999888889988887754
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=324.01 Aligned_cols=312 Identities=38% Similarity=0.555 Sum_probs=269.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEE
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~-~~~--l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~ 89 (328)
-|+.+.+.+++|.|+||+||||+.++.+.|...+. |.+ ..++++..++...|+++|.++|+|||.++++|..+++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 49999999999999999999999999999988888 887 779999999999999999999999999999999999999
Q ss_pred ee--cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 020300 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (328)
Q Consensus 90 id--~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~ 167 (328)
++ +.|+....+++|+.-.|++.++.+.++|..++.++||.|+.|+..+...+..++++...+.+......+. -+. .
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~-~~~-~ 298 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRA-WRG-D 298 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhc-ccc-c
Confidence 99 5588888888887779999999999999999999999999999999999999998876643222222222 000 1
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHH
Q 020300 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (328)
Q Consensus 168 ~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al 247 (328)
...|.-+..+|+..|.+.+++.+|+.+|+...++++..++.+..+...++ ..+..++++|++|+++|+.|+.++.+++
T Consensus 299 i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 299 IGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred cchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345678888889998889999999999999888888877766665 5566778999999999999999999999
Q ss_pred hcCCC-chHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHh
Q 020300 248 SSNLS-EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 248 ~~~~~-~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~ 326 (328)
.+... .++.+..||+||++||.+.+.+|++|||++|+|+++++++|.+|+|+||||||||.+.|++.+..+.+.+++.+
T Consensus 377 ~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~ 456 (489)
T KOG0631|consen 377 ARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKE 456 (489)
T ss_pred hcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhh
Confidence 98632 23568999999999999999999999999999999999999999999999999999999998999999998877
Q ss_pred hC
Q 020300 327 LF 328 (328)
Q Consensus 327 ~y 328 (328)
.|
T Consensus 457 ~~ 458 (489)
T KOG0631|consen 457 IY 458 (489)
T ss_pred hh
Confidence 65
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=6.9e-34 Score=264.64 Aligned_cols=213 Identities=30% Similarity=0.421 Sum_probs=161.8
Q ss_pred cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEE
Q 020300 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~ 89 (328)
+.+||++.|.|+||+|+|||||||+.|+++.|++..+|..+++++++++++++|. ..|.+| ++|.++++|||. ++
T Consensus 80 ~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~S-g~D~a~~~~gg~---v~ 155 (307)
T COG1577 80 SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKAS-GIDIATITYGGL---VA 155 (307)
T ss_pred CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCC-cccceEEEeCCE---EE
Confidence 4579999999999999999999999999999999999999999999999999998 457776 599999999993 33
Q ss_pred eecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
+... ..++.+.++....|++.|++.|.++..
T Consensus 156 ~~~~-~~~~~l~~~~~~~~~I~~tg~~~sT~e------------------------------------------------ 186 (307)
T COG1577 156 FKKG-FDFEKLEIELLGTLVIGDTGVPGSTKE------------------------------------------------ 186 (307)
T ss_pred EecC-CCccccccccCCeEEEEEcCCcCcHHH------------------------------------------------
Confidence 3321 234455555444899999998764331
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
+|+.|++.+++.+ +.+ ..++++... -+.++..++++
T Consensus 187 --------~V~~V~~l~~~~~---------------~~~---------------~~~~~~ig~------~~~~a~~al~~ 222 (307)
T COG1577 187 --------LVAGVAKLLEEEP---------------EVI---------------DPILDAIGE------LVQEAEAALQT 222 (307)
T ss_pred --------HHHHHHHHHHhhh---------------HHH---------------HHHHHHHHH------HHHHHHHHHhc
Confidence 2222222221110 000 011222222 23455677887
Q ss_pred CCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHh
Q 020300 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~ 326 (328)
+ |.+.||++|+.+|.+|..+ ++|+|++|+|++++++.|++|||+||||+|||+++|++. +.++++..++.+
T Consensus 223 ~-----d~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~~ 294 (307)
T COG1577 223 G-----DFEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEK 294 (307)
T ss_pred c-----cHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchHHHHHHHHHHh
Confidence 6 4999999999999999998 899999999999999999999999999999999999985 446667766654
No 12
>PLN02677 mevalonate kinase
Probab=100.00 E-value=1.1e-32 Score=265.50 Aligned_cols=215 Identities=24% Similarity=0.312 Sum_probs=163.2
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHhcc-ccCCcCCCchh
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-EV-------------PKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~-~l-------------~~~~l~~la~~~E~-~~g~~~G~~D~ 76 (328)
..++++.|+|+||+|+|||||||++||++.|+..+++. ++ +.+++.++|+.+|+ ++|.|||+ |+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~ 205 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DN 205 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hH
Confidence 46899999999999999999999999999999999983 22 23678899999998 67999986 99
Q ss_pred hHHhhhccceEEEeecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 020300 77 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (328)
Q Consensus 77 ~~~~~gg~~~~~~id~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~ 156 (328)
+++++|| .+.|+...+++++.+.+++++++||++|++|...
T Consensus 206 a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT~~l---------------------------------- 246 (387)
T PLN02677 206 TVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNTKAL---------------------------------- 246 (387)
T ss_pred HHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcHHHH----------------------------------
Confidence 9999999 4666655567777777899999999998765432
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhH
Q 020300 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (328)
Q Consensus 157 ~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E 236 (328)
|+.|++...+.+ +.+. .++++..++
T Consensus 247 ----------------------V~~V~~~~~~~p---~~~~---------------------------~il~~~~~i--- 271 (387)
T PLN02677 247 ----------------------VAGVSERALRHP---DAMK---------------------------SVFNAVDSI--- 271 (387)
T ss_pred ----------------------HHHHHHHHHhCH---HHHH---------------------------HHHHHHHHH---
Confidence 222222221110 0000 112233332
Q ss_pred HHHHHHHHHHHhc--CCC--chHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEE
Q 020300 237 AKRVHAFKDTVSS--NLS--EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312 (328)
Q Consensus 237 ~~r~~~~~~al~~--~~~--~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~ 312 (328)
+.++.++|++ +|. .+++++.||++|+.+|..|+.+ ++|+|.+|.+++++++.| +|||+||||+|||+|+|+
T Consensus 272 ---~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~ 346 (387)
T PLN02677 272 ---SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLL 346 (387)
T ss_pred ---HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEc
Confidence 3456677776 221 1257999999999999999988 899999999999999985 799999999999999999
Q ss_pred eC----CcHHHHHHHHHh
Q 020300 313 KE----SIDSQFILNLKV 326 (328)
Q Consensus 313 ~~----~~~~~~~~~i~~ 326 (328)
++ +.+++++++|++
T Consensus 347 ~~~~~~~~~~~l~~~l~~ 364 (387)
T PLN02677 347 PTLLSGTVVDKVIAELES 364 (387)
T ss_pred ccccchhHHHHHHHHHHH
Confidence 75 246677777765
No 13
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=8.8e-32 Score=242.51 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=165.5
Q ss_pred ceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEeec
Q 020300 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+++++..+|+|+|+|||||||++||++.|+..+-|..+++++|+++|+.+|+ .++...|.|||++++|||++ +++|
T Consensus 89 ~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn---fMEf 165 (333)
T COG2605 89 PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN---FMEF 165 (333)
T ss_pred ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCce---EEEE
Confidence 3899999999999999999999999999999999999999999999999997 78999999999999999987 7777
Q ss_pred CC---ceEEEeecCC------CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 020300 93 NP---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (328)
Q Consensus 93 ~~---~~~~~~~~~~------~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~ 163 (328)
.+ ..+++++... ..++++++|++
T Consensus 166 ~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi------------------------------------------------ 197 (333)
T COG2605 166 RGNGEVVVNPLRINRERTAELEARLLLYYTGI------------------------------------------------ 197 (333)
T ss_pred cCCCcEEEeecccchhHHHHHHhceEEEEecc------------------------------------------------
Confidence 55 3445554432 23455555554
Q ss_pred hhhhhhhcCCCC-CChh-HHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHH
Q 020300 164 GLCVAFACKNGS-SDPV-FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (328)
Q Consensus 164 ~~~~~~~g~~~~-~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~ 241 (328)
++. ++++ +++++.-.++ ++. .++.|-+. .-+.
T Consensus 198 ---------~R~Ss~V~~dQ~~~~~~~~----~~~-------------------------------~e~~~~mk--~~A~ 231 (333)
T COG2605 198 ---------TRQSSEVIEDQVRNVVDGD----EET-------------------------------LEALHEMK--ALAY 231 (333)
T ss_pred ---------ccchhHHHHHHHHHhhccc----HHH-------------------------------HHHHHHHH--HHHH
Confidence 332 2222 2333332221 110 11112121 1234
Q ss_pred HHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHH
Q 020300 242 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQF 320 (328)
Q Consensus 242 ~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~-~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~ 320 (328)
++.++|-++| +..||++|+.+|+..+.+. ++|+|.+|+|++.|+++|++|+|++|||+||+++++|++++..++
T Consensus 232 ~~~~al~~nd-----~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l 306 (333)
T COG2605 232 EMKDALVRND-----IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNEL 306 (333)
T ss_pred HHHHHHHhcc-----hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHH
Confidence 5778888774 9999999999999999884 799999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 020300 321 ILNLKV 326 (328)
Q Consensus 321 ~~~i~~ 326 (328)
+++++.
T Consensus 307 ~r~l~~ 312 (333)
T COG2605 307 ARALEK 312 (333)
T ss_pred HHHHHH
Confidence 998875
No 14
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=2.6e-31 Score=252.66 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=165.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+|++++|.++||+++|||||||++||++.+++++++.+++.++|+++|+.+|+ ++|.++| +|++++++||. .+++
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg~---~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCCe---EEEe
Confidence 58999999999999999999999999999999999999999999999999998 7899998 59999999994 3433
Q ss_pred cCC--ceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 92 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 92 ~~~--~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
... ..+.++++|.++.+++++|+++.++... |.. +++ +++
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~----~~~-----------v~~---------------~~~-------- 210 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGITASTTKV----VGD-----------VRK---------------LKE-------- 210 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCCchhHHHH----HHH-----------HHH---------------HHh--------
Confidence 222 2456677777889999999986543211 100 000 000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
.. .+.+. .+.++..+ ++.++..+|.+
T Consensus 211 ------------------~~---p~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 236 (328)
T PTZ00298 211 ------------------NQ---PTWFN---------------------------RLLENYNA------CVSEAKEALQK 236 (328)
T ss_pred ------------------cC---HHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 00 00000 11223333 34567778887
Q ss_pred CCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhhC
Q 020300 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVLF 328 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~y 328 (328)
+| ++.|+++|+++|+.++.. ++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+.+++.|
T Consensus 237 ~d-----~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~ 310 (328)
T PTZ00298 237 GN-----LFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARC 310 (328)
T ss_pred CC-----HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHh
Confidence 64 999999999999999865 789999999999999999999999999999999999976 66788888877654
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=1.9e-31 Score=247.12 Aligned_cols=195 Identities=29% Similarity=0.384 Sum_probs=150.5
Q ss_pred ceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEeec
Q 020300 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+++++++|+||+++|||||||+++|++.|++++++.++++++++++|+.+|+ +.|.++| +||+++++|| +++++.
T Consensus 78 ~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg---~~~~~~ 153 (273)
T TIGR00549 78 PLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGG---PVYFEK 153 (273)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCC---eEEEEc
Confidence 4999999999999999999999999999999999999999999999999998 6799998 5999999998 445565
Q ss_pred CCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~ 172 (328)
... ...++.+.++.+++++|+.++++... .+.+
T Consensus 154 ~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~---------------~~~v------------------------------- 186 (273)
T TIGR00549 154 GEG-EFTKLISLDGYFVIADTGVSGSTKEA---------------VARV------------------------------- 186 (273)
T ss_pred CCC-ceeeccCCCeEEEEEECCCCCcHHHH---------------HHHH-------------------------------
Confidence 432 23444455789999999986543211 0000
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 020300 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (328)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~ 252 (328)
++.+... .+.+. ...+++. .++.+++++|.++|
T Consensus 187 ----------~~~~~~~---~~~~~---------------------------~~~~~~~------~~~~~~~~al~~~d- 219 (273)
T TIGR00549 187 ----------RQLLERF---PELID---------------------------SIMDAIG------ELTLEAKAALQDGD- 219 (273)
T ss_pred ----------HHHHHhC---HHHHH---------------------------HHHHHHH------HHHHHHHHHHHhCC-
Confidence 0000000 00000 0111211 35667888998774
Q ss_pred chHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEE
Q 020300 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 311 (328)
Q Consensus 253 ~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L 311 (328)
++.||++|+++|..+++. ++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 220 ----~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 220 ----VESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred ----HHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 999999999999999875 999999999999999999999999999999999986
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=2.6e-30 Score=248.28 Aligned_cols=214 Identities=17% Similarity=0.189 Sum_probs=163.1
Q ss_pred CcceeEEEEecCCCC----CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccce
Q 020300 12 FQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g----~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~ 86 (328)
.+||++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++ .+|+++++|||+
T Consensus 98 ~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~s-g~D~~a~~~GG~-- 174 (358)
T TIGR01220 98 LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGS-CGDIAASTYGGW-- 174 (358)
T ss_pred CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCC-cchhhhhhhCCE--
Confidence 468999999999984 699999999999999999999999999999999999998 456555 479999999994
Q ss_pred EEEeecCC----------------------ceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHH
Q 020300 87 AELIDFNP----------------------IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (328)
Q Consensus 87 ~~~id~~~----------------------~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~ 144 (328)
+.|-.+.+ ..++++++|+++++++++|+.++++..
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~----------------------- 231 (358)
T TIGR01220 175 IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTAS----------------------- 231 (358)
T ss_pred EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcHH-----------------------
Confidence 33333321 235677777789999999998754321
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhH
Q 020300 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (328)
Q Consensus 145 ~~~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
+++.|++...+.+ +.+.
T Consensus 232 ---------------------------------~v~~V~~~~~~~~---~~~~--------------------------- 248 (358)
T TIGR01220 232 ---------------------------------LVSDVHRRKWRGS---ASYQ--------------------------- 248 (358)
T ss_pred ---------------------------------HHHHHHHHhhcCh---HHHH---------------------------
Confidence 1111111111100 0000
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhh-----cCCCChhHHHHHHHHHhCCCcEEEE
Q 020300 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECSCPELEELVNVCRNNGALGARL 299 (328)
Q Consensus 225 ~~~~r~~~~v~E~~r~~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~-----~~vs~p~ld~l~~~a~~~Ga~Gaki 299 (328)
...++... .+.++.++|+++| ++.||++|+++|..|+.+ .++++|++++|++.+++.|+ |+|+
T Consensus 249 ~~l~~~~~------i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKl 316 (358)
T TIGR01220 249 RFLETSTD------CVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKP 316 (358)
T ss_pred HHHHHHHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecC
Confidence 01122222 2446778888774 999999999999999986 38999999999999999997 9999
Q ss_pred eCcCCcceeEEEEeC-CcHHHHHHHHHh
Q 020300 300 TGAGWGGCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 300 sGaG~GG~v~~L~~~-~~~~~~~~~i~~ 326 (328)
||||+|||+++|+++ +..+++.++|++
T Consensus 317 sGAGgGg~~ial~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 317 SGAGGGDCGIAILDAEADITHVRQRWET 344 (358)
T ss_pred CCCCCcCEEEEEeCCchhHHHHHHHHHH
Confidence 999999999999975 557888888876
No 17
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.97 E-value=3e-29 Score=261.29 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=162.0
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.||+++|.|+||+|+|||||||++||++.|++++++.++++++|+++|..+|+.++.++|++||+++++||. .++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~---~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGV---KLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCe---EEEEe
Confidence 599999999999999999999999999999999999999999999999999997777888999999999994 46665
Q ss_pred CC-----ceEEEeecCC------CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 020300 93 NP-----IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (328)
Q Consensus 93 ~~-----~~~~~~~~~~------~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 161 (328)
.+ ..+++++.+. +-++++++|+++++++.. + .+
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~i------------------V------------------~~ 845 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGI------------------L------------------AE 845 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHH------------------H------------------HH
Confidence 43 1234444332 346999999986543221 0 00
Q ss_pred hhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHH
Q 020300 162 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (328)
Q Consensus 162 v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~ 241 (328)
.++.+..+. +... .+++++.. -+.
T Consensus 846 -------------------Vv~~~~~~~----~~~~---------------------------~~l~~ig~------La~ 869 (974)
T PRK13412 846 -------------------IVRSMFLNS----TAHL---------------------------QLLHEMKA------HAL 869 (974)
T ss_pred -------------------HHHHHHhCc----HHHH---------------------------HHHHHHHH------HHH
Confidence 001111110 0000 01122222 244
Q ss_pred HHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEe-CCcHHH
Q 020300 242 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK-ESIDSQ 319 (328)
Q Consensus 242 ~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~-~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~-~~~~~~ 319 (328)
++.++|+++| ++.||++|+++|..++.+ -++|+|++|+|++.+++ |++|+|+||||+|||+++|++ ++.+++
T Consensus 870 ea~~ALe~gD-----~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~ 943 (974)
T PRK13412 870 DMYEAIQRGE-----FEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAER 943 (974)
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHH
Confidence 6778899875 999999999999999988 58999999999999976 799999999999999999995 466778
Q ss_pred HHHHHHh
Q 020300 320 FILNLKV 326 (328)
Q Consensus 320 ~~~~i~~ 326 (328)
+.+++++
T Consensus 944 I~~~L~~ 950 (974)
T PRK13412 944 IRKILTE 950 (974)
T ss_pred HHHHHHh
Confidence 8888765
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=99.97 E-value=1.7e-28 Score=230.71 Aligned_cols=208 Identities=27% Similarity=0.308 Sum_probs=155.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+|++++++++||+++|||||||+++|++.+++++++.++++++++++|.++|. +.|.++| +|++++++||. + +..
T Consensus 74 ~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~--~-~~~ 149 (302)
T PRK03926 74 DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF--V-TIP 149 (302)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe--E-EEc
Confidence 59999999999999999999999999999999999999999999999999998 6798887 69999999984 3 332
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
... +++. +++.+++++|+.+.++... |+ .++. ++.
T Consensus 150 ~~~----~l~~-~~~~~vl~~~~~~~sT~~~----~~-----------~~~~---------------~~~---------- 184 (302)
T PRK03926 150 DRK----KLPF-PECGIVVGYTGSSGSTKEL----VA-----------NVRK---------------LKE---------- 184 (302)
T ss_pred CCC----cCCC-CCceEEEEECCCCCcHHHH----HH-----------HHHH---------------HHH----------
Confidence 221 3343 3788999999986543211 00 0000 000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
. . .+.+.. ..++..+ .+..+..++.++
T Consensus 185 ----------------~--~-~~~~~~---------------------------~~~~~~~------~~~~~~~al~~~- 211 (302)
T PRK03926 185 ----------------E--Y-PELIEP---------------------------ILSSIGK------ISEKGEELILSG- 211 (302)
T ss_pred ----------------h--C-HHHHHH---------------------------HHHHHHH------HHHHHHHHHhcC-
Confidence 0 0 000000 0011111 122345677766
Q ss_pred CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhh
Q 020300 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 252 ~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~ 327 (328)
|++.|+++|+++|..+.. +++++|+++++++.+++.|++|+||||+|+|||+++|++++.++++.+.+.+.
T Consensus 212 ----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~ 282 (302)
T PRK03926 212 ----DYVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA 282 (302)
T ss_pred ----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhc
Confidence 499999999999976544 58999999999999999999999999999999999999888888898888653
No 19
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=225.86 Aligned_cols=219 Identities=23% Similarity=0.280 Sum_probs=157.7
Q ss_pred eeecCcc----eeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHhcc-ccCCcC
Q 020300 8 IITKFQL----FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------KEIAQLTCECEQ-FIGTQS 71 (328)
Q Consensus 8 ~~~~~~g----~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~-----------~~l~~la~~~E~-~~g~~~ 71 (328)
+|.+.+| +.+.++|++|+|+|||||||++|++++++..++|.--++ +-+-++|.+.|+ ++|+|+
T Consensus 121 l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpS 200 (397)
T KOG1511|consen 121 LCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPS 200 (397)
T ss_pred hhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCc
Confidence 4555666 999999999999999999999999999999988863222 335688999998 779999
Q ss_pred CCchhhHHhhhccceEEEeecCCc-eEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCch
Q 020300 72 GGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ 150 (328)
Q Consensus 72 G~~D~~~~~~gg~~~~~~id~~~~-~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~ 150 (328)
| .|+++|+||| .+.|++. .++.+.-.+.++++++||++|++++..... ++.+..+|
T Consensus 201 G-iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~lVa~------------Vr~~~~kf----- 257 (397)
T KOG1511|consen 201 G-IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKALVAG------------VRELLEKF----- 257 (397)
T ss_pred c-cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHHHHHHH------------HHHHHHhh-----
Confidence 7 9999999999 5666554 666776666899999999999987654211 11111111
Q ss_pred hhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHH
Q 020300 151 EAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 230 (328)
Q Consensus 151 ~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 230 (328)
+++++. +++.+
T Consensus 258 ------------------------------------------------------Pevi~~---------------i~~ai 268 (397)
T KOG1511|consen 258 ------------------------------------------------------PEVIKA---------------IFDAI 268 (397)
T ss_pred ------------------------------------------------------hHHHHH---------------HHHHH
Confidence 111110 11111
Q ss_pred hhHHhHHHHHHHHHHHHhcC-C-CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCccee
Q 020300 231 AHVYSEAKRVHAFKDTVSSN-L-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCV 308 (328)
Q Consensus 231 ~~~v~E~~r~~~~~~al~~~-~-~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v 308 (328)
..+. .+++..+.+. + .+...-.++.++|..||+.|..+ ||+||.+|.++...++.| +.+|+||||+|||+
T Consensus 269 d~is------~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~ 340 (397)
T KOG1511|consen 269 DEIS------LEAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCV 340 (397)
T ss_pred HHHH------HHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceE
Confidence 1111 1223334421 1 01111125999999999999998 999999999999999999 78899999999999
Q ss_pred EEEEeCCcHHHHHHHHHh
Q 020300 309 VALVKESIDSQFILNLKV 326 (328)
Q Consensus 309 ~~L~~~~~~~~~~~~i~~ 326 (328)
++|++++..++.+..+++
T Consensus 341 itlL~~~~~qe~i~~~ke 358 (397)
T KOG1511|consen 341 ITLLKPGTEQEQIDKWKE 358 (397)
T ss_pred EEEECCCCchHHHHHHHH
Confidence 999999876666666554
No 20
>PLN02451 homoserine kinase
Probab=99.90 E-value=6.7e-22 Score=190.39 Aligned_cols=202 Identities=19% Similarity=0.227 Sum_probs=148.2
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhH-HhhhccceEEEe
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~-~~~gg~~~~~~i 90 (328)
+|++++|+++||+++|||||||+++|++.+++++++.++++++|++++.++|. ..|. -+||++ +++||+ +++.
T Consensus 133 ~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~---h~Dnva~a~~GG~--v~~~ 207 (370)
T PLN02451 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGY---HADNIAPALMGGF--VLIR 207 (370)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCC---CccchhHhhcCCE--EEEE
Confidence 58999999999999999999999999999999999999999999999999997 4453 279987 688984 3332
Q ss_pred ecCCceEEEeecC--CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhh
Q 020300 91 DFNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (328)
Q Consensus 91 d~~~~~~~~~~~~--~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~ 168 (328)
...+....++++| ++|.|++++|+.+.+|... .+.+...
T Consensus 208 ~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~a---------------r~~lp~~------------------------ 248 (370)
T PLN02451 208 SYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKKM---------------RAALPKE------------------------ 248 (370)
T ss_pred ecCCCeEEEeecCCCCCeEEEEEcCCCCccHHHH---------------HHHHhhh------------------------
Confidence 3344455566665 5799999999875432211 1111000
Q ss_pred hhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHh
Q 020300 169 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 248 (328)
Q Consensus 169 ~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~ 248 (328)
+.. ..+ +....|+..++.++.
T Consensus 249 ----------------------~~~------------------------------------~~~-v~~~~~~~~l~~al~ 269 (370)
T PLN02451 249 ----------------------IPM------------------------------------KHH-VWNCSQAAALVAAIL 269 (370)
T ss_pred ----------------------cch------------------------------------hhH-HHHHHHHHHHHHHHH
Confidence 000 000 001223445667888
Q ss_pred cCCCchHhHHHHHHHHHHH--HHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHH
Q 020300 249 SNLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLK 325 (328)
Q Consensus 249 ~~~~~~~~~~~~g~lm~~s--h~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~ 325 (328)
++| ++.++++|+.. |+..+. .++|+++++++.+++.|++|++|||+| .|+++|++. +.++++.++++
T Consensus 270 ~~d-----~~~l~~~m~nD~~~e~~r~---~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l~ 339 (370)
T PLN02451 270 QGD-----AVLLGEALSSDKIVEPTRA---PLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERMV 339 (370)
T ss_pred cCC-----HHHHHHHHHHHHHhHHHHh---hhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHHH
Confidence 764 99999999864 555554 489999999999999999999999887 499999975 46778877776
Q ss_pred hh
Q 020300 326 VL 327 (328)
Q Consensus 326 ~~ 327 (328)
+.
T Consensus 340 ~~ 341 (370)
T PLN02451 340 EA 341 (370)
T ss_pred HH
Confidence 53
No 21
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.89 E-value=2e-21 Score=189.95 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=155.1
Q ss_pred CcceeEEEEecC-------------------C--------CCCCCChhHHHHHHHHHHHHHHhCCCC-------------
Q 020300 12 FQLFNHINSLFF-------------------N--------LGSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (328)
Q Consensus 12 ~~g~~i~i~s~i-------------------P--------~g~GLGSSaA~~va~~~al~~~~~~~l------------- 51 (328)
+++++++|.|+. + .+.|||||||++||++.||..+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 678999998877 2 279999999999999999999999876
Q ss_pred CHHHHHHHHHHhccc-cCCcCCCchhhHHhhhccceEEEeecCCc----------------------------eEEEeec
Q 020300 52 PKKEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQL 102 (328)
Q Consensus 52 ~~~~l~~la~~~E~~-~g~~~G~~D~~~~~~gg~~~~~~id~~~~----------------------------~~~~~~~ 102 (328)
+++.|.++|+.+|.. .|+++++.|.++++||| +.|..|.|. .++++.+
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~l 267 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSL 267 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccC
Confidence 779999999999984 58777779999999999 567777652 1223334
Q ss_pred CCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHH
Q 020300 103 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 182 (328)
Q Consensus 103 ~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v 182 (328)
|+++++++.+++.+++ +.+||+.|
T Consensus 268 P~~l~Llvgdtg~~ss--------------------------------------------------------T~~lV~~V 291 (454)
T TIGR01219 268 PPLMNLFMGDPGGGSS--------------------------------------------------------TPSMVGKV 291 (454)
T ss_pred CCCCEEEEEcCCCCcC--------------------------------------------------------cHHHHHHH
Confidence 4455555555555443 34455666
Q ss_pred HHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHH-HHHHHhhHHhHHH-HHHHHHHHHhcCCC---chHhH
Q 020300 183 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK-LHQRAAHVYSEAK-RVHAFKDTVSSNLS---EEDKL 257 (328)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~v~E~~-r~~~~~~al~~~~~---~~~~~ 257 (328)
++|.+..+-..+++.+.+... |+.+. ...++.....+.. --.++++.+.++.. ...++
T Consensus 292 ~~~~~~~p~~s~~i~~~l~~a-----------------N~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~ 354 (454)
T TIGR01219 292 KKWQMSDPEESRENWQNLSDA-----------------NLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEEL 354 (454)
T ss_pred HHHHHHCHHHHHHHHHHHHHH-----------------HHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccH
Confidence 555554422222222221110 00000 0000000000000 00011223333200 01258
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCCChhHHHHHHHHHh-CCCcEEEEeCcCCcceeEEEEeCCc--HHHHHHHHHh
Q 020300 258 KKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESI--DSQFILNLKV 326 (328)
Q Consensus 258 ~~~g~lm~~sh~~lr~~~-----~vs~p~ld~l~~~a~~-~Ga~GakisGaG~GG~v~~L~~~~~--~~~~~~~i~~ 326 (328)
..+.+.|..+.+.||.+- .|.+|++.+|++.+.+ .||+||+.+|||||+|+++|+..+. .+++.+.|++
T Consensus 355 ~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~ 431 (454)
T TIGR01219 355 LEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSS 431 (454)
T ss_pred HHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhh
Confidence 889999999999998773 5779999999999998 5999999999999999999997743 5777777653
No 22
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.88 E-value=3.1e-21 Score=178.38 Aligned_cols=184 Identities=27% Similarity=0.278 Sum_probs=146.0
Q ss_pred eeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhH-HhhhccceEEEeecC
Q 020300 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAELIDFN 93 (328)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~-~~~gg~~~~~~id~~ 93 (328)
+++.++++||.++|||||||.+||.+.|+|++++.+++++++.+++...|. + -||.+ +++||. .+..+..
T Consensus 78 ~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-----H--pDNVapa~lGG~--~l~~~~~ 148 (299)
T COG0083 78 VKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-----H--PDNVAPAVLGGL--VLVEEES 148 (299)
T ss_pred EEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-----C--CchHHHHhhCCE--EEEeecC
Confidence 999999999999999999999999999999999999999999999999993 1 56665 899994 3333335
Q ss_pred CceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcCC
Q 020300 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKN 173 (328)
Q Consensus 94 ~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~~ 173 (328)
+....++++|.+|.++++.|+++-+|. .++++|
T Consensus 149 ~~~~~~v~~~~~~~~v~~iP~~e~sT~---------------~aR~vL-------------------------------- 181 (299)
T COG0083 149 GIISVKVPFPSDLKLVVVIPNFEVSTA---------------EARKVL-------------------------------- 181 (299)
T ss_pred CceEEEccCCcceEEEEEeCCccccHH---------------HHHHhc--------------------------------
Confidence 567778888889999999998854322 122222
Q ss_pred CCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCCc
Q 020300 174 GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 253 (328)
Q Consensus 174 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~~ 253 (328)
++. |+.++. +....|+.-++.||.+++
T Consensus 182 -------------P~~-~~~~da-------------------------------------V~n~s~~a~lv~al~~~~-- 208 (299)
T COG0083 182 -------------PKS-YSRKDA-------------------------------------VFNLSRAALLVAALLEGD-- 208 (299)
T ss_pred -------------ccc-CCHHHH-------------------------------------HHHHHHHHHHHHHHHcCC--
Confidence 222 332221 222356677888999874
Q ss_pred hHhHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCC
Q 020300 254 EDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315 (328)
Q Consensus 254 ~~~~~~~g~lm~~-sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~ 315 (328)
.+.+...|.+ -|+.+|.. ..|.++++.+.+.+.|++|+.+|||| .++++++++.
T Consensus 209 ---~~l~~~~~~D~ihepyR~~---L~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~ 263 (299)
T COG0083 209 ---PELLRAMMKDVIHEPYRAK---LVPGYAEVREAALEAGALGATLSGAG--PTVFALADES 263 (299)
T ss_pred ---HHHHHHHhccccchhhhhh---hCccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccc
Confidence 8888888887 79999976 78999999999999999999999998 5999999884
No 23
>PRK01212 homoserine kinase; Provisional
Probab=99.88 E-value=6.9e-21 Score=179.03 Aligned_cols=198 Identities=25% Similarity=0.252 Sum_probs=145.5
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCch-hhHHhhhccceEEEe-
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD-QAISIMAKSGFAELI- 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D-~~~~~~gg~~~~~~i- 90 (328)
+|++++|+++||.++|||||||.++|++.+++++++.+++.++|+++|.++|. + .| ...+++||+ .+.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~-----~--~ddv~~~l~GG~---~~~~ 149 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG-----H--PDNVAPALLGGL---VLAL 149 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----C--HHHHHHHHhCCE---EEEE
Confidence 58999999999999999999999999999999999999999999999999984 1 34 445789995 233
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
+..+..+.+++.|+++++++++|+.+.+|.. +.+.
T Consensus 150 ~g~g~~~~~~~~~~~~~~vlv~p~~~~sT~~---------------a~~~------------------------------ 184 (301)
T PRK01212 150 EENGVISVKIPVFDDLKWVVAIPNIELSTAE---------------ARAV------------------------------ 184 (301)
T ss_pred ECCceEEEEecCCCCeEEEEEECCCcCCHHH---------------HHHh------------------------------
Confidence 3555667788777789999999976432211 0000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+++. ++.. ..+.+..|+..+..++.++
T Consensus 185 ---------------l~~~-~~~~-------------------------------------~~~~~~~~~~~l~~al~~~ 211 (301)
T PRK01212 185 ---------------LPKQ-YSLK-------------------------------------DAVFNSSRAALLVAALYTG 211 (301)
T ss_pred ---------------CcCc-CCHH-------------------------------------HHHHHHHHHHHHHHHHhhC
Confidence 0000 0000 0011223555677888876
Q ss_pred CCchHhHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~-sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.++++|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++..+++.+++++.|
T Consensus 212 d-----~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~ 280 (301)
T PRK01212 212 D-----YELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF 280 (301)
T ss_pred C-----HHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh
Confidence 4 9999999854 35555433 56999999999999999999999876 79999998765578888877653
No 24
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.88 E-value=8.3e-21 Score=175.02 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=82.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccc--CCcCCCchhhHHhhhccceEEEe
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI--GTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~--g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
+||+++++++||+++|||||||+++|++.+++++++.+++.++++++|.++|+.. +.++|.+|++++++|| +.+.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEE
Confidence 6899999999999999999999999999999999999999999999999999843 3568889999999999 4466
Q ss_pred ecCCceEE-EeecCCCceEEEEecCC
Q 020300 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (328)
Q Consensus 91 d~~~~~~~-~~~~~~~~~~vl~~s~~ 115 (328)
+.++.... +.+.| ++.+++++|+.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 66554333 33333 45788888765
No 25
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.86 E-value=5e-20 Score=173.38 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=130.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhh-HHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~-~~~~gg~~~~~~id 91 (328)
+|+++.+.|+||+++|||||||+++|++.+++++++.+++.++|+++|.++|. + .|++ ++++||+ .+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-----h--~Dnv~~~l~GG~---~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-----H--PDNVAPALLGGF---QLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-----C--cccHHHHhccCE---EEEE
Confidence 58999999999999999999999999999999999999999999999999994 1 5654 5789995 2333
Q ss_pred cCCceEEEeecC--CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 92 FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
.+......++++ +++.+++++|+.+.+|... | +.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~a-------~--------~~l---------------------------- 185 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAEA-------R--------AVL---------------------------- 185 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCcccHHHH-------H--------HhC----------------------------
Confidence 333334455444 6799999999875432210 0 000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
++. ++..+ .+....|+..++.++.+
T Consensus 186 -----------------p~~-~~~~~-------------------------------------~v~~~~~~~~l~~al~~ 210 (302)
T TIGR00191 186 -----------------PKA-YPRQD-------------------------------------LVFNLSHLAGLVHAIYQ 210 (302)
T ss_pred -----------------ccc-CCHHH-------------------------------------HHHHHHHHHHHHHHHHc
Confidence 000 11000 00011233335567776
Q ss_pred CCCchHhHHHHHHHHHHH--HHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHH
Q 020300 250 NLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS 318 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~s--h~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~ 318 (328)
++ + .+++.+... |+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++...
T Consensus 211 ~~-----~-~l~~~~~~d~l~e~~~~~---l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~ 270 (302)
T TIGR00191 211 KK-----P-DLGAIMMKDRIHQPYRES---LIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAE 270 (302)
T ss_pred CC-----H-HHHHHHcccccchhhHhh---hCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhH
Confidence 52 4 355555443 5666643 69999999999999999999999888 7999999875443
No 26
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1.2e-20 Score=176.22 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=136.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++|.++||+++|||||||+++|++.+++++++.++++++++++|.++| .|..++++||. .+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~Gg~---~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYGGT---ALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999886 37778889984 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~ 172 (328)
+.....+++.+++..+++++|+...+|... + + .++ .
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~~~~T~~~-------~------------~--------------~~~---~-------- 186 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDIGVSTKDV-------Y------------K--------------NLD---L-------- 186 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCCCCCHHHH-------H------------h--------------cCc---c--------
Confidence 434445555555778999998864322110 0 0 000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 020300 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (328)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~ 252 (328)
. +.. ...+..+..++.++
T Consensus 187 ----------------~---------------------------------------~~~-----~~~~~~~~~~l~~~-- 204 (286)
T PRK00128 187 ----------------D---------------------------------------KIS-----HPDTEKLIEAIEEG-- 204 (286)
T ss_pred ----------------c---------------------------------------ccc-----CcchHHHHHHHhcC--
Confidence 0 000 00123345667766
Q ss_pred chHhHHHHHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhh
Q 020300 253 EEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVL 327 (328)
Q Consensus 253 ~~~~~~~~g~lm~~sh~~lr~~~~v-s~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~ 327 (328)
|++.++++|+. .+ ..+++ .+|+++++++.+++.|++|++|||+| +|+++|++. +.++++.+.+++.
T Consensus 205 ---d~~~~~~~~~n---~l-~~~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 205 ---DYQGICANMGN---VL-ENVTLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred ---CHHHHHHhccC---cH-HHHHHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhh
Confidence 49999998863 23 22344 48999999999999999999999888 899999976 4577888887754
No 27
>PRK01123 shikimate kinase; Provisional
Probab=99.83 E-value=4.8e-19 Score=165.16 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=81.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccc-C-CcCCCchhhHHhhhccceEEEe
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI-G-TQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~-g-~~~G~~D~~~~~~gg~~~~~~i 90 (328)
+||+++++|+||+++|||||||+++|++.|++++++.+++.++|+++|.++|+.. + ..++.+|+++++|||+ .+.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~---~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGV---TVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCE---EEE
Confidence 4899999999999999999999999999999999999999999999999999743 3 4567789999999995 345
Q ss_pred ecCCce-EEEeecCCCceEEEEecCCcc
Q 020300 91 DFNPIR-TTDVQLPAGGTFVVAHSLAES 117 (328)
Q Consensus 91 d~~~~~-~~~~~~~~~~~~vl~~s~~~~ 117 (328)
+..... ..++ +.++.+++++|+.+.
T Consensus 151 ~~~~~~~~~~~--~~~~~~vv~~p~~~~ 176 (282)
T PRK01123 151 DNREMKLLKRD--EVELDVLVLIPPEGA 176 (282)
T ss_pred cCCCceEEEEe--cCCcEEEEEECCCCc
Confidence 543322 2233 335899999998743
No 28
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=4.8e-19 Score=166.52 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=133.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
++++++|+|+||+++|||||||.++|++.|++++++.+++.++|+++|.++| .|..++++||+ .+...
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG~---~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGGT---ALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCCe---EEEEe
Confidence 5899999999999999999999999999999999999999999999999875 46677889984 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~ 172 (328)
+...+.++..+.++.++++.|+...++.. .|+ . ++. .
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~~~~sT~~----~~~-----------~------------------l~~---~------- 186 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFADGGLSTPA----VFR-----------E------------------LDR---L------- 186 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCCCCCCHHH----HHH-----------h------------------chh---h-------
Confidence 44445555555566666666654221110 000 0 000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 020300 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (328)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~ 252 (328)
.... . +....++..+..++.++|
T Consensus 187 -------------~~~~----------------~---------------------------~~~~~~~~~~~~al~~~d- 209 (300)
T PRK03188 187 -------------REAG----------------D---------------------------PPRLGEPDPLLAALRAGD- 209 (300)
T ss_pred -------------hccc----------------c---------------------------ccccccHHHHHHHHHcCC-
Confidence 0000 0 000012344667788764
Q ss_pred chHhHHHHHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHh
Q 020300 253 EEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 253 ~~~~~~~~g~lm~~sh~~lr~~~~v-s~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~ 326 (328)
++.+++.|+...+. +.+ .+|+++++++.+++.|++|++|||+|. ++++|+++ +.++++.+.+++
T Consensus 210 ----~~~l~~~~~n~le~----~~~~~~p~l~~l~~~~~~~Galga~lSGsG~--tv~~l~~~~~~~~~~~~~l~~ 275 (300)
T PRK03188 210 ----PAQLAPLLGNDLQA----AALSLRPSLRRTLRAGEEAGALAGIVSGSGP--TCAFLCADADSAVDVAAALSG 275 (300)
T ss_pred ----HHHHHHHhhCcCHH----HHHHhCchHHHHHHHHHHCCCCEEEEEcccc--ceEEEeCCHHHHHHHHHHHHh
Confidence 99999998642222 233 499999999999999999999998885 57888876 557788877765
No 29
>PTZ00299 homoserine kinase; Provisional
Probab=99.82 E-value=6.9e-19 Score=167.10 Aligned_cols=199 Identities=20% Similarity=0.166 Sum_probs=140.0
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhccccCCcCCCchhh-HHhhhccceEE
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAE 88 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~---~~~l~~la~~~E~~~g~~~G~~D~~-~~~~gg~~~~~ 88 (328)
+|++++|+++||+++|||||||.++|.+.+++++++.+++ .++|+++|.++| | =.||+ .+++||.. +
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~E---G----HpDNVapal~GG~~--~ 151 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFE---G----HPDNAAPAIYGGIQ--L 151 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhc---C----CcccHHHHHhCCEE--E
Confidence 5899999999999999999999999999999999999985 799999999998 2 15755 48899952 2
Q ss_pred EeecC--CceEEEeecCCCceEEEEecCCc--chhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 020300 89 LIDFN--PIRTTDVQLPAGGTFVVAHSLAE--SLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (328)
Q Consensus 89 ~id~~--~~~~~~~~~~~~~~~vl~~s~~~--~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (328)
..... .....+++.|+++.++++.|+.. -+|. .++
T Consensus 152 ~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~~~sT~---------------~aR-------------------------- 190 (336)
T PTZ00299 152 VYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMKANTH---------------VTR-------------------------- 190 (336)
T ss_pred EEecCCCceEEEecCCCCCeEEEEEECCCCccccHH---------------HHH--------------------------
Confidence 22212 23344667777899999999762 1111 011
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHH
Q 020300 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (328)
Q Consensus 165 ~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~ 244 (328)
+.+++. ++.+ ..+....|+..++
T Consensus 191 -------------------~vLP~~-v~~~-------------------------------------dav~n~~~~~~lv 213 (336)
T PTZ00299 191 -------------------NLIPTS-VSLE-------------------------------------DAVFNISRTSILV 213 (336)
T ss_pred -------------------hhCccc-CcHH-------------------------------------HHHHhhhHHHHHH
Confidence 111111 1111 0111223444567
Q ss_pred HHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC----------
Q 020300 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE---------- 314 (328)
Q Consensus 245 ~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~---------- 314 (328)
.+|.++| ++.+..+.+..|+.+|.. -..|+++.+.+.+.+.|++|+.||||| .++++|++.
T Consensus 214 ~al~~~d-----~~ll~~~~D~lhep~R~~--~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~ 284 (336)
T PTZ00299 214 LALSTGD-----LRMLKSCSDKLHEQQRSD--ALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQPR 284 (336)
T ss_pred HHHHhCC-----HHHHHhchhcccCccccc--ccCccHHHHHHHHHHCCCeEEEEEchh--hhheEEecccccccccccc
Confidence 8888775 888865433467766641 268999999999999999999999998 599999972
Q ss_pred --CcHHHHHHHHHhh
Q 020300 315 --SIDSQFILNLKVL 327 (328)
Q Consensus 315 --~~~~~~~~~i~~~ 327 (328)
+..+++.+++.+.
T Consensus 285 ~~~~~~~i~~~~~~~ 299 (336)
T PTZ00299 285 EERKAESVAEAMIKA 299 (336)
T ss_pred chhHHHHHHHHHHHH
Confidence 2366777777663
No 30
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=2.6e-19 Score=169.27 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=139.3
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+||+++|.++||.++|||||||+++|++.+++++++.+++.++++++|.++| .|..++++||. .+...
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~GG~---~~~~~ 152 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAGGT---QLCFG 152 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeECCe---EEEEC
Confidence 5899999999999999999999999999999999999999999999999876 35567888884 23322
Q ss_pred CCceEEEeecCCCceEEEE-ecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 93 NPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~-~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
+...+.+++.|+++.++++ +|+...+|... | +.+++.
T Consensus 153 ~g~~~~~~~~~~~~~~vv~~~p~~~~~T~~a----~-----------~~~~~~--------------------------- 190 (312)
T PRK02534 153 RGEILEPLPDLDGLGVVLAKYPSLSVSTPWA----Y-----------KTYRQQ--------------------------- 190 (312)
T ss_pred CCCEeEECCCCCCcEEEEEECCCCCccHHHH----H-----------HHHhhh---------------------------
Confidence 3344667777778999887 78874332211 1 000000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
+++. +...+ ...+. +.+..|...+..++.++
T Consensus 191 --------------~~~~-~~~~~-----------------------------~~~~~----~~~~~~~~~l~~al~~~- 221 (312)
T PRK02534 191 --------------FGDT-YLSDE-----------------------------EDFEQ----RRQALRSGPLLQAISAK- 221 (312)
T ss_pred --------------cccc-cccCc-----------------------------ccccc----cccccchhHHHHhhhcc-
Confidence 0000 00000 00000 11112333456677766
Q ss_pred CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhh
Q 020300 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVL 327 (328)
Q Consensus 252 ~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~-~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~ 327 (328)
|++.+++.| |+.++....-..|++.++++.++ +.|++|+.|||+| +|+++|++. +.++++.+++++.
T Consensus 222 ----d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~ 290 (312)
T PRK02534 222 ----DPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREA 290 (312)
T ss_pred ----CHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHH
Confidence 488888766 55666653336899999998888 8999999999776 799999976 4577777777653
No 31
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.78 E-value=9.4e-18 Score=157.25 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=77.7
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
.+|+++.|+++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|...+++||. .+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~gg~---~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSGHA---AFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEECCe---EEEE
Confidence 35899999999999999999999999999999999999999999999999875 47777888884 3444
Q ss_pred cCCceEEEeecCCCceEEEEecCCcch
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
.......+++.++++.+++++|+++.+
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~~~s 178 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHVSIS 178 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCCCcC
Confidence 333344556555678899999987544
No 32
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=1e-17 Score=156.53 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=128.1
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHh-hhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI-MAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~-~gg~~~~~~id 91 (328)
+|+++.|+++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|-.+++ +||. .+..
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig---------~Dvp~~l~~gg~---~~~~ 149 (287)
T PRK14616 82 KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG---------ADVPYFLEMKGL---AYAT 149 (287)
T ss_pred CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEeccCCc---EEEE
Confidence 6899999999999999999999999999999999999999999999999987 2422222 3553 2232
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
........++.+..+.+++++|+.+-+|... .+.+.+.
T Consensus 150 g~g~~~~~~~~~~~~~~vvv~P~~~vsT~~a---------------~~~l~~~--------------------------- 187 (287)
T PRK14616 150 GIGDELEDLQLTLPFHIVTVFPEEHISTVWA---------------YKNFYRR--------------------------- 187 (287)
T ss_pred EcCceeEECCcCCCcEEEEECCCCCcCHHHH---------------HHHhhhh---------------------------
Confidence 2223344444444578999999875433211 0000000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
+. + ...++..++.++.+.
T Consensus 188 -------------------~~------------------------------------~------~~~~~~~l~~~l~~~- 205 (287)
T PRK14616 188 -------------------FE------------------------------------R------ERPDLKTLVRRLCLD- 205 (287)
T ss_pred -------------------cc------------------------------------c------CCchHHHHHHHHhcC-
Confidence 00 0 000111122333321
Q ss_pred CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhhC
Q 020300 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVLF 328 (328)
Q Consensus 252 ~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~y 328 (328)
++++.++.++|+- +..+.. ..|+++++.+.+++.|++|+.|||+|. ++++|+++ +.++++.+.+++.|
T Consensus 206 ---~~~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSGp--tv~al~~~~~~a~~i~~~l~~~~ 274 (287)
T PRK14616 206 ---GDTSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSGS--AVFGLFENEADAEAAAEMMRARY 274 (287)
T ss_pred ---CHHHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEecccc--cceEEeCCHHHHHHHHHHhHHhC
Confidence 1355555555544 333433 579999999999999999999999984 99999976 56888888888765
No 33
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=6.9e-18 Score=157.20 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=77.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.|.++||+++|||||||.++|++.+++++++.+++.+++.++|..+| .|...+++||. .+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G---------~Dv~~~l~gg~---~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG---------ADVPFFIFKKT---ALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceeeeCCc---EEEEE
Confidence 5899999999999999999999999999999999999999999999998754 47777788874 24443
Q ss_pred CCceEEEeecCCCceEEEEecCCcchh
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLK 119 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~ 119 (328)
+...+.+++.++++.+++++|+.+.+|
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~~~sT 178 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGLHVST 178 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCCCCCH
Confidence 344455666556788999999886543
No 34
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=3.7e-17 Score=153.05 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=77.9
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++|.++||+++|||||||.++|++.+++++++.+++.++++++|..+| .|...+++||. .+...
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~gg~---~~~~g 156 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDSRP---LIMRG 156 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCCe---EEEEe
Confidence 5899999999999999999999999999999999999999999999999875 47778899984 23333
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
....+.+++.++++.+++++|+.+.+
T Consensus 157 ~g~~~~~l~~~~~~~~vv~~p~~~~s 182 (290)
T PRK14608 157 IGEELTPLPGLPSLPAVLVNPGVPVA 182 (290)
T ss_pred cCCEeEECCCCCCcEEEEECCCCCcC
Confidence 33445566544578899999988554
No 35
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.74 E-value=2.2e-16 Score=149.89 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=132.0
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.|+++||.++|||||||+++|.+.|++++++.+++.++|++++.+.|. + ..|.+++++||+ .++.
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~-----s-~~~va~~~~GG~----vv~~ 150 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT-----S-GIGVASFEDGGF----IVDG 150 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC-----C-ccceeeeeeCCE----EEEC
Confidence 48999999999999999999999999999999999999999999999998662 2 245677899995 2331
Q ss_pred ----C---------------CceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhh
Q 020300 93 ----N---------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153 (328)
Q Consensus 93 ----~---------------~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~ 153 (328)
. +..+.++++| +|+|+++.|+.+ .++. .|.. +++.+.
T Consensus 151 G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~-------are~------~~lp~~--------- 206 (324)
T TIGR00144 151 GHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSG-------RREV------NIFQKY--------- 206 (324)
T ss_pred CcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCc-------HHHH------HHHHhc---------
Confidence 1 1224566777 999999999874 2221 1211 111110
Q ss_pred hccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhH
Q 020300 154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 233 (328)
Q Consensus 154 ~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 233 (328)
.+++.++.
T Consensus 207 -----------------------------------~~i~~~dv------------------------------------- 214 (324)
T TIGR00144 207 -----------------------------------CPVPLRDV------------------------------------- 214 (324)
T ss_pred -----------------------------------CCCCHHHH-------------------------------------
Confidence 01211111
Q ss_pred HhHHHHH--HHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhh-h-cCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeE
Q 020300 234 YSEAKRV--HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV-L-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 309 (328)
Q Consensus 234 v~E~~r~--~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~-~-~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~ 309 (328)
.+..|+ .+++.++.++| ++.|++.|++-+..-.+ . -+.-.|.+..+++.+.+ ++|+-|||+| .+++
T Consensus 215 -~~~~~~~l~~l~~al~~~d-----~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSGsG--PTv~ 284 (324)
T TIGR00144 215 -ERICHLILMKMMPAVVEGD-----LDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSSFG--PTVY 284 (324)
T ss_pred -HHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecCCC--CeEE
Confidence 111222 34578888764 99999999875543321 1 12346777777776654 4899998555 7999
Q ss_pred EEEeCCcHHHHHHHHHh
Q 020300 310 ALVKESIDSQFILNLKV 326 (328)
Q Consensus 310 ~L~~~~~~~~~~~~i~~ 326 (328)
+|++.+ ++++.+++.+
T Consensus 285 al~~~~-~~~~~~~~~~ 300 (324)
T TIGR00144 285 AVTDEK-PGNIAGAVAD 300 (324)
T ss_pred EEecCc-hHHHHHHHHH
Confidence 999764 5556655554
No 36
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.72 E-value=6.4e-17 Score=150.45 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=68.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++|.++||+++|||||||.++|++.+++++++.+++ +.+++..+| .|...+++||+ .+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---------~dv~~~~~GG~---~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---------ADVPFFLLGGA---AEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC---------CCcCeeeeCCe---EEEEe
Confidence 5899999999999999999999999999999999998765 445554443 47777889984 23433
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
+...+.+++.| ++.+++++|+++.+
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~~s 171 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVAVS 171 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCCCC
Confidence 33345555543 78899999988543
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=2.7e-16 Score=147.61 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=72.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++|.++||+++|||||||.++|++.+++++++.+++.++++++|..+|- |...++.||. . +...
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~ga---------DvPffl~gg~--a-~~~G 154 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGA---------DVPFFLHNVP--C-RATG 154 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC---------CCeeeccCCC--E-EEEe
Confidence 68999999999999999999999999999999999999999999999999873 3333334442 1 2222
Q ss_pred CCceEEEeec-CCCceEEEEecCCcchh
Q 020300 93 NPIRTTDVQL-PAGGTFVVAHSLAESLK 119 (328)
Q Consensus 93 ~~~~~~~~~~-~~~~~~vl~~s~~~~~~ 119 (328)
....+.++++ ++++.+++++|+++-+|
T Consensus 155 ~Ge~~~~l~~~~~~~~~vl~~P~~~vsT 182 (296)
T PRK14615 155 IGEILTPVALGLSGWTLVLVCPEVQVST 182 (296)
T ss_pred eEeEEEECCCCCCCcEEEEECCCCCcCh
Confidence 2234455554 34678999999986543
No 38
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=1.6e-16 Score=147.05 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=75.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++++.++||+++|||||||.++|++.+++++++.+++.++++++|..++ .|...+++|+. .+...
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG---------aDvpffl~g~~---a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG---------ADCAFFIRNKP---VYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEccCCC---EEEEE
Confidence 5899999999999999999999999999999999999999999999999864 57666667763 23333
Q ss_pred CCceEEEeecC-CCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLP-AGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~-~~~~~vl~~s~~~~~ 118 (328)
....+.+++.+ +++.+++++|++..+
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~~~s 175 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDIHVS 175 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCCCCC
Confidence 34455566543 568899999988544
No 39
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=5.9e-16 Score=143.90 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=76.5
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++++++||+++|||||||.++|++.+++++++.+++.++|.++|..+| .|...+++||. .+...
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~---------~D~~~~~~Gg~---~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS---------ADAPFFLKGGF---ALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCeeecCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999987 36555678874 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
......+++.+.++.+++++|+++.+
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~~~s 172 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNIKSS 172 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCCCCC
Confidence 43344555544566899999988654
No 40
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.70 E-value=9.6e-16 Score=143.88 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=126.1
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~-~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+|++++|+++||+++|||||||.+++++.+++..++ ++. +++.++|.++| .| +++++||. ..+..
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lG---------aD-vP~~l~G~--~a~~~ 157 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIG---------SD-VPFFLGEG--HAFVT 157 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhC---------Cc-cchhhcCC--eEEEe
Confidence 689999999999999999999999888888887655 444 67777998875 47 44445553 34555
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
.......++++|..+. +++.|+++.+|... .+.+.+..
T Consensus 158 g~Ge~~~~l~~~~~~~-vlv~P~~~vsT~~a---------------~~~l~~~~-------------------------- 195 (297)
T PRK14613 158 GKGEIMEEIEVHKGQG-ILALTPQVMNTGEM---------------YALLKKPL-------------------------- 195 (297)
T ss_pred cCCcEEEEcCCCCCeE-EEEECCCCcChHHH---------------HHhcchhh--------------------------
Confidence 5555566766665554 67788875432211 00110000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
... . . .. . . +.+...++.++.+++
T Consensus 196 ---------------~~~-~--~----------~~-------------------~-------~--~~~~~~~~~al~~~~ 219 (297)
T PRK14613 196 ---------------QES-A--S----------QK-------------------N-------G--NTLSEDLISSLKVGD 219 (297)
T ss_pred ---------------ccc-c--c----------cc-------------------c-------c--cccHHHHHHHHHcCC
Confidence 000 0 0 00 0 0 012223556676654
Q ss_pred CchHhHHHHHHH-HHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhhC
Q 020300 252 SEEDKLKKLGDL-MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVLF 328 (328)
Q Consensus 252 ~~~~~~~~~g~l-m~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~y 328 (328)
++.+... +|+. +..+.. .+|+++++++.+.+.|++|++|||+| +|+++|++. +.++++.+.+++.|
T Consensus 220 -----~~~l~~~l~ndl-e~~~~~---l~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~ 287 (297)
T PRK14613 220 -----WVSLQGRLENDF-EPVAFQ---LHPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEF 287 (297)
T ss_pred -----HHHHHHHhcccc-hHHHHH---hCcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhh
Confidence 7777554 4665 334432 48999999999999999999999995 799999987 66788888887654
No 41
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.59 E-value=8.7e-14 Score=126.39 Aligned_cols=198 Identities=17% Similarity=0.167 Sum_probs=140.2
Q ss_pred cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEe
Q 020300 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
...|+++.|.++||...||||.+.++.|+..++++++++.++.++|+....+ |..+|+. .++.-+||+ ++
T Consensus 68 ~~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR-----G~tSgiG-v~afe~GGF----IV 137 (312)
T COG1907 68 VGEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR-----GGTSGIG-VYAFEYGGF----IV 137 (312)
T ss_pred ccCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc-----CCcccee-EEEEEECCE----EE
Confidence 3478999999999999999999999999999999999999999999887766 4334322 455667774 45
Q ss_pred ecC------C--c--eEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 020300 91 DFN------P--I--RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (328)
Q Consensus 91 d~~------~--~--~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~ 160 (328)
|.. | . .+-+..+|.+|.|+++.|..++. . + +++|.++ +.+.
T Consensus 138 DGGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg---~----~--~~~E~~i----f~~~---------------- 188 (312)
T COG1907 138 DGGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERG---V----S--GRREVDI----FKKY---------------- 188 (312)
T ss_pred ECCcccCcccCCCCceeeeecCCCceEEEEEecCCCcc---c----c--chHHHHH----HHhc----------------
Confidence 531 1 1 25578899999999999988641 1 1 1111111 1110
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHH
Q 020300 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (328)
Q Consensus 161 ~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~ 240 (328)
+ +.+. +..+++.|++ +
T Consensus 189 -------------------------~---p~p~-------------------------------~~~~~ls~~v-----L 204 (312)
T COG1907 189 -------------------------C---PVPL-------------------------------EEVGELSHRV-----L 204 (312)
T ss_pred -------------------------C---CCCH-------------------------------HHHHHHHHHH-----H
Confidence 0 0110 1123333322 2
Q ss_pred HHHHHHHhcCCCchHhHHHHHHHHHHHHHHh---hhhc--CCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCC
Q 020300 241 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315 (328)
Q Consensus 241 ~~~~~al~~~~~~~~~~~~~g~lm~~sh~~l---r~~~--~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~ 315 (328)
..++.|+..+ |++.||+.|++-|... .+.. .+.++.+..+++.+.+. ++|+.+| .||.++++++++.
T Consensus 205 m~mmPavvE~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~ 276 (312)
T COG1907 205 MKMMPAVVER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSR 276 (312)
T ss_pred HHHhHHHHhh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEecccc
Confidence 3566777654 5999999999998887 3332 46789999999999998 7999998 8999999999886
Q ss_pred cHHH
Q 020300 316 IDSQ 319 (328)
Q Consensus 316 ~~~~ 319 (328)
....
T Consensus 277 ~~~~ 280 (312)
T COG1907 277 EAGS 280 (312)
T ss_pred ccch
Confidence 5443
No 42
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.56 E-value=9.8e-15 Score=106.76 Aligned_cols=67 Identities=36% Similarity=0.484 Sum_probs=61.8
Q ss_pred eEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhc
Q 020300 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (328)
Q Consensus 16 ~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg 83 (328)
+++++|+||+++|||||||+++|++.++++++++++++++|+++++.+|+..|.++| +|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCCh-hhHHHHHhCc
Confidence 689999999999999999999999999999999999999999999999984488854 7779999997
No 43
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.54 E-value=2e-13 Score=126.56 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=71.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.|+++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|...++.|+ ..+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~l~g~---~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVFVRGH---AAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEecCC---cEEEEe
Confidence 5899999999999999999999999999999999999999999999999876 3533333343 234443
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
......+++.| ...+++++|+.+.+
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~~~s 178 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGVHIS 178 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCCCcC
Confidence 33445566543 45678999987544
No 44
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.52 E-value=4.2e-12 Score=119.43 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=132.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee-
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id- 91 (328)
.++++.++++||.++|||||||..+|++.|++++++++++++++.++|.+.+ |..|+ +++||+ +.+..
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gsa~~------s~~GG~--v~~~~g 152 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GSACR------SLFGGY--VAWEKG 152 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CCeee------eeecCe--EEEEcC
Confidence 4799999999999999999999999999999999999999999999999977 43332 789995 32322
Q ss_pred --cCCceEEEeecCCCc----eEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 020300 92 --FNPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (328)
Q Consensus 92 --~~~~~~~~~~~~~~~----~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (328)
..+....+++.+..| .++++.+..+....++ . .+|.
T Consensus 153 ~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt---------~-------------------------gm~~---- 194 (305)
T TIGR01240 153 KDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSR---------Q-------------------------GMQL---- 194 (305)
T ss_pred CCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCH---------H-------------------------HHHH----
Confidence 223334555544344 4555565543210000 0 0010
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 020300 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (328)
Q Consensus 166 ~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~ 245 (328)
.++..++ ...|..+. ..++..+++
T Consensus 195 -------------------~~~ts~~----------------------------------~~~~v~~~---~~~l~~~~~ 218 (305)
T TIGR01240 195 -------------------TVATSEL----------------------------------FKEWIEHV---VPDFEVXRK 218 (305)
T ss_pred -------------------hhhcCcc----------------------------------HHHHHHHH---HHHHHHHHH
Confidence 0000000 01122221 124677889
Q ss_pred HHhcCCCchHhHHHHHHHHHHHHHHhhhhc-C------CCChhHHHHHHHHHh---CCCcEEEEeCcCCcceeEEEEeCC
Q 020300 246 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-E------CSCPELEELVNVCRN---NGALGARLTGAGWGGCVVALVKES 315 (328)
Q Consensus 246 al~~~~~~~~~~~~~g~lm~~sh~~lr~~~-~------vs~p~ld~l~~~a~~---~Ga~GakisGaG~GG~v~~L~~~~ 315 (328)
+|.++| ++.||++...+-..|.... . .-+|+.-.+++...+ .|.-..-..-|| ..+.+|+.++
T Consensus 219 ai~~~D-----~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv~vl~~~~ 291 (305)
T TIGR01240 219 AIKTKD-----FATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNVKVLYLAE 291 (305)
T ss_pred HHHhcc-----HHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCEEEEEccc
Confidence 999875 9999999887655554432 1 124555555555444 566666777777 5899999999
Q ss_pred cHHHHHHHHHhhC
Q 020300 316 IDSQFILNLKVLF 328 (328)
Q Consensus 316 ~~~~~~~~i~~~y 328 (328)
..+++.+.+.+.|
T Consensus 292 ~~~~v~~~~~~~~ 304 (305)
T TIGR01240 292 NLSKLFEFIYKLF 304 (305)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999888754
No 45
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.5e-13 Score=130.91 Aligned_cols=215 Identities=21% Similarity=0.282 Sum_probs=142.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHhccccCCcCCCchhhHHhhhccceEE
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA----QLTCECEQFIGTQSGGMDQAISIMAKSGFAE 88 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~----~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~ 88 (328)
+||+++.+|++|-|+|||.||-+++..++|+....+.-...+.+. .-..++|+.+.+-+||+||...++-|..
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK--- 766 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIK--- 766 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhh---
Confidence 699999999999999999999999999999999998866665544 4455689888788999999999998842
Q ss_pred EeecC---C--ceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 020300 89 LIDFN---P--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (328)
Q Consensus 89 ~id~~---~--~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~ 163 (328)
.-.++ + ...+++.+|.++ | + .|. .
T Consensus 767 ~gr~rael~~~ie~eeiTipe~f-----------------------~--------e------------------kL~--d 795 (948)
T KOG4644|consen 767 KGRCRAELNHGIEHEEITIPEEF-----------------------R--------E------------------KLE--D 795 (948)
T ss_pred hccchhhccCCceeeeecCCHHH-----------------------H--------H------------------HHh--h
Confidence 21121 1 233444444310 0 0 011 1
Q ss_pred hhhhhhhcCCCCCC--hhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHH
Q 020300 164 GLCVAFACKNGSSD--PVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (328)
Q Consensus 164 ~~~~~~~g~~~~~~--~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~ 241 (328)
.++++|||+++.+. +.+.+++|...- . ...+.+ |-+. ..+.
T Consensus 796 hLLLVYTGKTRLAkNLLQdViRn~far~----------------------~------------a~~Q~a-h~l~--~~td 838 (948)
T KOG4644|consen 796 HLLLVYTGKTRLAKNLLQDVIRNFFARC----------------------K------------ATKQKA-HKLA--EATD 838 (948)
T ss_pred cEEEEEeCchHHHHHHHHHHHHHHHHhh----------------------H------------HHHHHH-HHHH--HHHH
Confidence 34456676665433 223333332110 0 011222 2222 2456
Q ss_pred HHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHh--CCCcEEEEeCcCCcceeEEEEeCCcHH
Q 020300 242 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKESIDS 318 (328)
Q Consensus 242 ~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~-~vs~p~ld~l~~~a~~--~Ga~GakisGaG~GG~v~~L~~~~~~~ 318 (328)
++.+-+++|. ++.+|+++...|...+-.. ++..+...+|.+.... .| -.+...|||+||+++.+.++....
T Consensus 839 ecAegf~kGs-----l~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~kEpqqk 912 (948)
T KOG4644|consen 839 ECAEGFEKGS-----LELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIKEPQQK 912 (948)
T ss_pred HHHHHHhcCc-----HHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEecCCCCH
Confidence 6777888874 9999999999988766553 6888999999986543 23 345689999999999999886655
Q ss_pred HHHHHH
Q 020300 319 QFILNL 324 (328)
Q Consensus 319 ~~~~~i 324 (328)
+-++++
T Consensus 913 eaiEa~ 918 (948)
T KOG4644|consen 913 EAIEAF 918 (948)
T ss_pred HHHHHh
Confidence 555544
No 46
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.48 E-value=1.1e-13 Score=105.49 Aligned_cols=81 Identities=31% Similarity=0.487 Sum_probs=70.3
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHHHHHH-hhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEE-eCCcHHHH
Q 020300 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV-KESIDSQF 320 (328)
Q Consensus 243 ~~~al~~~~~~~~~~~~~g~lm~~sh~~-lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~-~~~~~~~~ 320 (328)
|++||.++| ++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+ +++.++++
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 457888775 99999999999885 222336789999999999999999999999999999999999 45789999
Q ss_pred HHHHHhhC
Q 020300 321 ILNLKVLF 328 (328)
Q Consensus 321 ~~~i~~~y 328 (328)
.+++++.|
T Consensus 76 ~~~l~~~~ 83 (85)
T PF08544_consen 76 AEALREHY 83 (85)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99999876
No 47
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.47 E-value=1.7e-12 Score=120.64 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=74.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.+.++||+++|||||||.++|++.+++++++.+++.++|.++|.++| .|...++.||. .+...
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~g~---a~~~G 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG---------MDTPFFFSTGS---ALGVG 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CcchhhhcCce---EEEEe
Confidence 5899999999999999999999999999999999999999999999999988 35556665553 23433
Q ss_pred CCceEEEeecCCCceEEEEecCCc
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~ 116 (328)
....+.+++.++++.++++.|++.
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCCC
Confidence 334556665555677899988764
No 48
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.43 E-value=5.4e-12 Score=117.80 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=70.5
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|++++|+++||+++|||||||.++|++.+++++++ ++.+++.+++..+. .|...+++||. .+...
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG---------aDvPffl~g~~---a~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG---------SDVPACLDSKT---LFVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCCcEEEECCe---EEEEe
Confidence 589999999999999999999999999999999996 79999999998843 78888888874 35555
Q ss_pred CCceEEEeec-CCCceEEEEec-CC
Q 020300 93 NPIRTTDVQL-PAGGTFVVAHS-LA 115 (328)
Q Consensus 93 ~~~~~~~~~~-~~~~~~vl~~s-~~ 115 (328)
+...+.+++. +....++++.| ++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC
Confidence 5555666642 22344788877 45
No 49
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.41 E-value=3.4e-12 Score=117.84 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=77.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.|++++|+++||+++|||+.||.+++++.+|+++++..++.++|.+++.++. .|...+++||. .+...
T Consensus 84 ~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG---------aDVPffl~g~t---A~a~G 151 (289)
T COG1947 84 GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG---------ADVPFFLSGGT---AFAEG 151 (289)
T ss_pred CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCcCeeeeCCc---eEEEE
Confidence 6899999999999999999999999999999999999999999999998865 66667777773 35555
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
+..+.++++-++...+++++|++.-+
T Consensus 152 ~GE~l~~~~~~~~~~~vl~~P~v~vs 177 (289)
T COG1947 152 RGEKLEPLEDPPEKWYVLAKPGVGVS 177 (289)
T ss_pred ccceeeECCCCCCceEEEEeCCCCCC
Confidence 55566777655577788999987543
No 50
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.39 E-value=4.3e-11 Score=107.96 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=78.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCc-CC-CchhhHHhhhccceEEEe
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SG-GMDQAISIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~-~G-~~D~~~~~~gg~~~~~~i 90 (328)
.++++.++|+||+++||.||||++.|++.|+.++.|.++++.+++++..++-...|.. .| .-|..++.+|| +.+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG---~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGG---IVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCC---eEEe
Confidence 4799999999999999999999999999999999999999999999988876544432 33 45666789999 4466
Q ss_pred ecCCceEEEe-ecCCCceEEEEecCC
Q 020300 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (328)
Q Consensus 91 d~~~~~~~~~-~~~~~~~~vl~~s~~ 115 (328)
|.+.+++-+. +.| ++..++.-|+.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 7766655444 334 67777777765
No 51
>PRK05905 hypothetical protein; Provisional
Probab=99.16 E-value=4.4e-10 Score=103.18 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=72.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhh-ccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~g-g~~~~~~id 91 (328)
+|+++.+.++||.++||||+||.++|++.+++++++ ++.+++.+++.++. .|...+++| +. -+..
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lG---------ADVPFfl~g~~~---a~~~ 150 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLG---------SDIPFFLSGYKT---AYIS 150 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCcceEEeCCcc---EEEE
Confidence 589999999999999999999999999999999997 68999999988865 566666777 53 2444
Q ss_pred cCCceEEEeecCCCceEEEEecCCcch
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
.....+++++.+....+++++|++.-+
T Consensus 151 G~GE~l~pl~~~~~~~~vlv~P~~~vS 177 (258)
T PRK05905 151 DYGSQVEDLIGQFKLTYKVIFMNVNVS 177 (258)
T ss_pred eeCceeEECCCCCCceEEEECCCCCCC
Confidence 444456666554445689999987543
No 52
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.96 E-value=5.2e-08 Score=88.29 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHhccc-cCCcCCCchhhHHhhhccceEEEeecCCceEEEe-
Q 020300 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV- 100 (328)
Q Consensus 26 g~GLGSSaA~~va~~--~al~~~~~~~l~~-~~l~~la~~~E~~-~g~~~G~~D~~~~~~gg~~~~~~id~~~~~~~~~- 100 (328)
..|||||||+++.++ +++....+.+++. .++.++|+.+-.. .|..+++.|.+++++|+ ++|..|.|.....+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhH
Confidence 689999999999998 3444435556665 8899999999874 57778889999999999 66766766322222
Q ss_pred -----ecCCCceEEEEecCC
Q 020300 101 -----QLPAGGTFVVAHSLA 115 (328)
Q Consensus 101 -----~~~~~~~~vl~~s~~ 115 (328)
.+. ++.++..+...
T Consensus 184 qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred hhCccccc-Ceeeeeccccc
Confidence 222 46666666543
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.96 E-value=3e-09 Score=97.91 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=73.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhh-ccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~g-g~~~~~~id 91 (328)
+|++++++++||+++|||||||.++|++.+++++++.+++.++|.++|.++. .|...+++| +. -+..
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~~~~---a~~~ 152 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVG---------ADVAFFISGYKS---ANVS 152 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCccEEecCCce---EEEE
Confidence 5899999999999999999999999999999999999999999999998865 566666666 42 2444
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchh
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLK 119 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~ 119 (328)
.....+++++.+.. .+++++|++.-+|
T Consensus 153 G~Ge~l~~l~~~~~-~~~lv~P~~~vsT 179 (257)
T PRK04181 153 GIGEIVEEFEEEIL-NLEIFTPNIFCST 179 (257)
T ss_pred eeCCeeEECCCCCC-eEEEECCCCCcCH
Confidence 44445566643222 3889999875443
No 54
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.95 E-value=1.9e-07 Score=88.43 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=52.3
Q ss_pred eeEEEEe--cCCCCCCCChhHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHhccccCCcCCCchhhHHhhhcc
Q 020300 15 FNHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (328)
Q Consensus 15 ~~i~i~s--~iP~g~GLGSSaA~~va~~~al~~~~~~~l~-~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~ 84 (328)
+++.|.| ++|.++|||||||..+|++.|++.+++++++ ..+|..+|+. | + +.|.- +++||+
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~-----G--S-GSa~r-S~~Gg~ 167 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ-----G--S-GSACR-SLYGGF 167 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc-----c--C-hHHHH-HhhCCe
Confidence 3677777 9999999999999999999999999999999 9999999985 4 2 24444 899994
No 55
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.89 E-value=7.4e-09 Score=93.02 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=133.0
Q ss_pred eeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccc--------cCCc---------------C
Q 020300 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF--------IGTQ---------------S 71 (328)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~--------~g~~---------------~ 71 (328)
-+.++.+-||.|+|+|||++..++.+...++...+.+++..+...+..+|+. .|.- +
T Consensus 95 Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~~ 174 (355)
T KOG1537|consen 95 TKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKVS 174 (355)
T ss_pred eeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhhc
Confidence 4577888999999999999999999999999888888776666655555421 0100 1
Q ss_pred CC-chhh-HHhhhccceEEEeecCCc---eEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhC
Q 020300 72 GG-MDQA-ISIMAKSGFAELIDFNPI---RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (328)
Q Consensus 72 G~-~D~~-~~~~gg~~~~~~id~~~~---~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~ 146 (328)
|. .|+. ...+||++ +....-|. +.-+++..++++|+++.|+++..++.
T Consensus 175 ~~~ad~ilp~~~gg~~--li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k------------------------- 227 (355)
T KOG1537|consen 175 GYHADNILPAIMGGFV--LIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKK------------------------- 227 (355)
T ss_pred CCCHHHhcccccCCee--eecCCCcccccccccCCCCccceEEEEeccccccchh-------------------------
Confidence 11 3443 36777753 23333332 33444555678899998887543221
Q ss_pred CCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHH
Q 020300 147 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 226 (328)
Q Consensus 147 ~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
+|.+ |+.. |.
T Consensus 228 ------------~R~v-----------------------LPt~-yp---------------------------------- 237 (355)
T KOG1537|consen 228 ------------MRAV-----------------------LPTE-YP---------------------------------- 237 (355)
T ss_pred ------------hhhh-----------------------cCcc-cc----------------------------------
Confidence 1111 1110 11
Q ss_pred HHHHhhHHhHHHHHHHHHHHHhcC-CCchHhHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHh---CCCcEEEEeC
Q 020300 227 HQRAAHVYSEAKRVHAFKDTVSSN-LSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRN---NGALGARLTG 301 (328)
Q Consensus 227 ~~r~~~~v~E~~r~~~~~~al~~~-~~~~~~~~~~g~lm~~-sh~~lr~~~~vs~p~ld~l~~~a~~---~Ga~GakisG 301 (328)
+. |.+...+|...+..|+-.+ + +......+|.+ -|+.+|.- ..|.++.+...+.. +|.+|.+++|
T Consensus 238 --~~-d~V~NlqrlA~LttAl~~~p~----n~~L~y~~m~DkvhqPyRa~---LIPGl~~il~~~~p~t~pGl~GiclSG 307 (355)
T KOG1537|consen 238 --MV-DHVWNLQRLAALTTALLEGPD----NVMLGYALMSDKVHQPYRAP---LIPGLEAILKAALPATYPGLFGICLSG 307 (355)
T ss_pred --ce-eeeecHHHHHHHHHHHhcCCC----chhhhhhhhhccccCccccc---cCccHHHHHHhhCcccCCceeeEEecC
Confidence 11 1123345655566777765 3 57777788886 78988875 78999999998887 4999999999
Q ss_pred cCCcceeEEEEeCCcHHHHHHHHHhh
Q 020300 302 AGWGGCVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 302 aG~GG~v~~L~~~~~~~~~~~~i~~~ 327 (328)
|| .++++|.. ++-+++-++|-+.
T Consensus 308 AG--PT~lAlat-enf~eI~~~mv~~ 330 (355)
T KOG1537|consen 308 AG--PTALALAT-ENFQEIGEKMVEA 330 (355)
T ss_pred CC--CeeEEEec-CcHHHHHHHHHHH
Confidence 98 58999996 6677777766554
No 56
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=1.3e-07 Score=84.78 Aligned_cols=90 Identities=23% Similarity=0.173 Sum_probs=66.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.|.++.+.|+||.|-||+||+|..||++.|...++|..++..+|+++|..+|.-.+. +|-+ +.++|.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtDsi----------iF~~---~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDSI----------IFDK---ATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCccce----------eccc---ceeehh
Confidence 679999999999999999999999999999999999999999999999999942222 2222 334555
Q ss_pred CCceE-EEeecCCCceEEEEecCC
Q 020300 93 NPIRT-TDVQLPAGGTFVVAHSLA 115 (328)
Q Consensus 93 ~~~~~-~~~~~~~~~~~vl~~s~~ 115 (328)
+...+ +...-++.+.+++..++.
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~ 172 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG 172 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC
Confidence 44222 122223356777777654
No 57
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=98.64 E-value=7.1e-07 Score=82.78 Aligned_cols=256 Identities=18% Similarity=0.161 Sum_probs=134.3
Q ss_pred cCC--CCCCCChhHHHHHHHHHHHHHHhCC----------CCC---HHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccc
Q 020300 22 FFN--LGSGLSSSTAFVCSSTVALMAAFGV----------EVP---KKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85 (328)
Q Consensus 22 ~iP--~g~GLGSSaA~~va~~~al~~~~~~----------~l~---~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~ 85 (328)
.+| ...|||||||+..+++.++..-++. +++ .+-+-++|+.+.. -.|+.+++.|..+++||.
T Consensus 146 ~~~eV~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS-- 223 (459)
T KOG4519|consen 146 EKPEVAKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS-- 223 (459)
T ss_pred ccccccccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc--
Confidence 455 3789999999999999777777753 122 3446677777765 458888889999999998
Q ss_pred eEEEeecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 020300 86 FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (328)
Q Consensus 86 ~~~~id~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (328)
..|..|.|..+..++ . .+.++.+.+ +++--++..+|...+.+- .|.-...+
T Consensus 224 -~rYrRF~P~lis~lp--~-----~i~~~~~~~----------------el~~~V~k~~W~~~~~~f-----~LP~~~~L 274 (459)
T KOG4519|consen 224 -QRYRRFSPELISFLP--Q-----VIVTGLPLN----------------ELIGTVLKGKWDNKRTEF-----SLPPLMNL 274 (459)
T ss_pred -eeeeeCCHHHHHHHH--H-----HHhccChhH----------------HHHHHhhhhhcccccccc-----cCCceeee
Confidence 446666663222221 1 011111111 111113333343322211 12222222
Q ss_pred h-hhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhh--hhHHHHHHHhhHHhHHHHHHH
Q 020300 166 C-VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA--KQYKLHQRAAHVYSEAKRVHA 242 (328)
Q Consensus 166 ~-~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~v~E~~r~~~ 242 (328)
+ ..-.|..++..||..|++|-...+- |-.+.-.+ ++++.-...+.+..+++- .+...+.|
T Consensus 275 ~mGd~~gGSsTp~mV~kVk~Wq~s~~p---e~~k~~~~-lddansr~~~~l~kl~~l~~~h~d~~~~------------- 337 (459)
T KOG4519|consen 275 FMGDGSGGSSTPSMVGKVKKWQMSDPP---EARKNWQN-LDDANSRLETKLNKLSKLAKDHWDVYLR------------- 337 (459)
T ss_pred eeecCCCCCCcHHHHHHHHHHhhcCCh---hHhhhhcc-hhhHHHHHHhhhhhhhHhhhhchhHHHH-------------
Confidence 2 2334566788899999999765521 11111000 111110000101001100 00111111
Q ss_pred HHHHHhcCCCchH---hHHHHHHHHHHHHHHhhhhc-----CCCChhHHHHHHHHHh-CCCcEEEEeCcCCcceeEEEEe
Q 020300 243 FKDTVSSNLSEED---KLKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVK 313 (328)
Q Consensus 243 ~~~al~~~~~~~~---~~~~~g~lm~~sh~~lr~~~-----~vs~p~ld~l~~~a~~-~Ga~GakisGaG~GG~v~~L~~ 313 (328)
..+.|+..+-++. .+.++-+.|..-..++|... .+..|....|.+-+.. .|++++-+.|||+-..++++..
T Consensus 338 v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~ 417 (459)
T KOG4519|consen 338 VIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITL 417 (459)
T ss_pred HHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEee
Confidence 1122222211111 12333344444455555442 4667778888888887 5999999999999999999986
Q ss_pred C--CcHHHHHHHHH
Q 020300 314 E--SIDSQFILNLK 325 (328)
Q Consensus 314 ~--~~~~~~~~~i~ 325 (328)
. +-..++++.|+
T Consensus 418 ~dvd~~~~~~~~w~ 431 (459)
T KOG4519|consen 418 GDVDSGTKLTQAWS 431 (459)
T ss_pred cchhHHHHHHhhhc
Confidence 5 44566666554
No 58
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.61 E-value=1.3e-05 Score=75.47 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=53.5
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhcc
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~ 84 (328)
..+++...++.|.++||+||||..+|+++|++.++++.++..+|.++|+.+ .-++ .-+++||+
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g-----SGSa----~RS~~Gg~ 151 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG-----SGSA----SRSIFGGF 151 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh-----ccch----hhhhcCCe
Confidence 457788888999999999999999999999999999999999999999873 2222 23789985
No 59
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.60 E-value=3.2e-06 Score=77.00 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred ceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeecC
Q 020300 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93 (328)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~~ 93 (328)
++.+.+.+++|+|+|+|-|+|.+.+.+.|++..++++ .++.++.|+.+|-..+ +|+.|..+..+||. .+..+
T Consensus 74 ~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGl----ViR~~ 145 (283)
T COG1829 74 GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGGL----VIRVK 145 (283)
T ss_pred CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCcE----EEEec
Confidence 4679999999999999999999999999999999865 8889999999996544 57899999999993 33333
Q ss_pred C-----ceEEEeecCCCceEEEEecC
Q 020300 94 P-----IRTTDVQLPAGGTFVVAHSL 114 (328)
Q Consensus 94 ~-----~~~~~~~~~~~~~~vl~~s~ 114 (328)
| ..++.++.|. ++++.+..+
T Consensus 146 pG~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 146 PGGPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred CCCCCeEEEEEeecCC-ceEEEEEcc
Confidence 3 4677888776 776666554
No 60
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.54 E-value=1.9e-05 Score=73.14 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=50.6
Q ss_pred eeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhcc
Q 020300 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (328)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~ 84 (328)
+++.-.++.|..+||.||||=-+|++.|++++++++.++++|..+|++.- |..| =++|||+
T Consensus 106 lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GSAC------RSl~GG~ 166 (395)
T KOG2833|consen 106 LHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GSAC------RSLYGGF 166 (395)
T ss_pred EEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---chhh------hhhhcce
Confidence 45555669999999999999999999999999999999999999998722 2222 2799994
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=68.62 E-value=11 Score=26.74 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHh
Q 020300 277 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 277 vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~ 326 (328)
++...+..|.+++++.|.--.++|... +..+.-++.++++++.+.+.+
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 567788999999999987778999544 577777889999999998876
No 62
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=40.44 E-value=39 Score=32.04 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHh
Q 020300 277 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 277 vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~ 326 (328)
++++.|..++++|.+.|.-..++|+-+ |..+-..+.+.++++.+.+++
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~~ 89 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELRE 89 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHHH
Confidence 577888999999999987788999654 677777777889999888764
No 63
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=26.15 E-value=1.8e+02 Score=26.79 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhh--cCCCChhHHHHHHH-HHhCCCcEEEEeCcCCcce
Q 020300 257 LKKLGDLMNDSHHSCSVL--YECSCPELEELVNV-CRNNGALGARLTGAGWGGC 307 (328)
Q Consensus 257 ~~~~g~lm~~sh~~lr~~--~~vs~p~ld~l~~~-a~~~Ga~GakisGaG~GG~ 307 (328)
+..-|++..+..+-+.+. -|+++.+||.+++- .++.|++-+....-|+.+.
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~ 67 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFP 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcc
Confidence 444444444444433333 38999999999985 4457999998877775433
Done!