Query 020300
Match_columns 328
No_of_seqs 140 out of 1518
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 2.5E-55 8.4E-60 436.4 31.0 314 11-328 144-489 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 2.9E-49 9.9E-54 392.1 31.7 302 12-328 147-448 (478)
3 1pie_A Galactokinase; galactos 100.0 1.1E-40 3.9E-45 325.3 31.1 252 13-328 140-394 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.6E-40 5.5E-45 322.2 26.7 248 12-328 129-379 (399)
5 2cz9_A Probable galactokinase; 100.0 1.8E-38 6.3E-43 301.7 28.4 244 12-328 85-329 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 5.5E-37 1.9E-41 293.5 13.8 218 12-326 96-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 6.1E-33 2.1E-37 268.5 21.9 216 12-326 126-358 (395)
8 3gon_A Phosphomevalonate kinas 100.0 1.9E-32 6.5E-37 257.9 22.1 210 11-327 83-319 (335)
9 3k17_A LIN0012 protein; protei 100.0 9.4E-32 3.2E-36 257.9 24.5 210 12-326 96-341 (365)
10 2pg9_A Phosphomevalonate kinas 100.0 1.8E-31 6.1E-36 253.3 21.9 210 11-326 85-320 (337)
11 2x7i_A Mevalonate kinase; tran 100.0 8.9E-31 3E-35 244.8 22.3 213 11-328 83-297 (308)
12 2hfs_A Mevalonate kinase, puta 100.0 8.8E-30 3E-34 240.4 26.9 214 13-328 96-313 (332)
13 4hac_A Mevalonate kinase; GHMP 100.0 1E-29 3.6E-34 239.6 26.9 209 12-327 95-304 (321)
14 2oi2_A Mevalonate kinase; enzy 100.0 2.9E-29 1E-33 232.3 24.0 210 12-328 72-283 (292)
15 1kkh_A Mevalonate kinase; mixe 100.0 4.2E-28 1.4E-32 227.5 21.4 203 12-327 97-306 (317)
16 1h72_C HK, homoserine kinase; 99.9 1.2E-26 4.3E-31 215.3 20.9 203 13-328 75-281 (296)
17 3hul_A HSK, HK, homoserine kin 99.9 5.5E-22 1.9E-26 185.0 21.2 199 11-327 68-270 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 2.3E-21 7.8E-26 181.5 17.4 193 13-326 87-280 (306)
19 2gs8_A Mevalonate pyrophosphat 99.9 4.2E-20 1.4E-24 173.3 21.8 200 13-326 91-302 (317)
20 3qt5_A Mevalonate diphosphate 99.8 1.8E-19 6.2E-24 170.4 21.5 203 13-328 93-313 (332)
21 2v8p_A 4-diphosphocytidyl-2-C- 99.8 1.2E-19 4.1E-24 166.7 11.8 93 13-117 80-172 (271)
22 1uek_A 4-(cytidine 5'-diphosph 99.8 1.4E-19 4.6E-24 166.5 11.5 90 13-118 75-164 (275)
23 1fi4_A Mevalonate 5-diphosphat 99.8 4.8E-17 1.6E-21 158.2 23.2 204 12-328 121-347 (416)
24 2ww4_A 4-diphosphocytidyl-2C-m 99.7 8.4E-18 2.9E-22 155.5 11.1 93 13-118 88-180 (283)
25 3lto_A Mevalonate diphosphate 99.7 5.2E-16 1.8E-20 145.7 23.3 200 13-328 91-308 (323)
26 2hke_A Diphosphomevalonate dec 99.7 6.2E-15 2.1E-19 141.7 22.7 203 12-328 95-318 (380)
27 3f0n_A Mevalonate pyrophosphat 99.6 2.5E-14 8.4E-19 137.5 19.5 201 13-328 122-344 (414)
28 3m05_A Uncharacterized protein 58.8 22 0.00075 27.4 6.0 48 279-326 15-67 (114)
29 2j9c_A GLNK1, hypothetical nit 32.6 56 0.0019 24.9 4.6 50 278-327 11-82 (119)
30 1vfj_A Nitrogen regulatory pro 29.0 77 0.0026 23.9 4.8 50 278-327 9-80 (116)
31 2eg2_A Nitrogen regulatory pro 26.0 70 0.0024 24.0 4.0 50 278-327 9-80 (112)
32 2cz4_A Hypothetical protein TT 25.8 71 0.0024 24.5 4.1 49 278-326 33-95 (119)
33 1o51_A Hypothetical protein TM 24.6 79 0.0027 24.1 4.1 48 279-326 29-96 (114)
34 3bzq_A Nitrogen regulatory pro 22.5 1.1E+02 0.0037 23.0 4.5 50 278-327 11-82 (114)
35 2i9o_A MHB8A peptide; beta-hai 22.0 63 0.0021 18.8 2.2 11 316-326 22-32 (37)
36 2o66_A PII protein; regulation 20.1 1.1E+02 0.0038 24.0 4.2 50 278-327 21-93 (135)
37 1hwu_A PII protein; herbaspiri 20.0 1.5E+02 0.0051 22.0 4.9 50 278-327 9-80 (112)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=2.5e-55 Score=436.41 Aligned_cols=314 Identities=31% Similarity=0.484 Sum_probs=264.4
Q ss_pred cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceE
Q 020300 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~---~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~ 87 (328)
+.+||++.|.|+||+|+|| |||++||++.|++.++ +.++++.+|+++|+++|+++|.|||+|||+++++|+.|++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 4589999999999999999 9999999999999998 7789999999999999998899999999999999999999
Q ss_pred EEeecCC-ceEEEeecCC----CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCch----hhhhcccc
Q 020300 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT 158 (328)
Q Consensus 88 ~~id~~~-~~~~~~~~~~----~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~----~~~~~~~~ 158 (328)
+++||++ +.+.++++|+ ++.|+|+||+++++||.+++++||.|++||+.|+++|++++|+... +.....++
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999987 7999999999999999999999999999999999999999887521 11122357
Q ss_pred chhhhhhhhh-hhc---CC---------CCCChhHHHHHhhhcC--CCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhh
Q 020300 159 LSDVEGLCVA-FAC---KN---------GSSDPVFAVKEFLRKE--PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (328)
Q Consensus 159 L~~v~~~~~~-~~g---~~---------~~~~~~~~v~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
|||+.+.+.. +.+ .+ +..+|.+.+.+.+.+. +|+.+++.+.++.+.+++.+.++..+++ +.++
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 9998654221 100 01 0123445555556543 7999999998886555554444444443 3345
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhcCC--CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeC
Q 020300 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 301 (328)
Q Consensus 224 ~~~~~r~~~~v~E~~r~~~~~~al~~~~--~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisG 301 (328)
+.+++|++|+++|+.||.+++++|++++ +++++++.||++|+++|.+||++|+||||++|.|++++++.|++|+||||
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTG 459 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTG 459 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEec
Confidence 5689999999999999999999999873 22357999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEE---eCCcHHHHHHHHHhhC
Q 020300 302 AGWGGCVVALV---KESIDSQFILNLKVLF 328 (328)
Q Consensus 302 aG~GG~v~~L~---~~~~~~~~~~~i~~~y 328 (328)
||||||+++|+ +++.++++++++.+.|
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y 489 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKF 489 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHT
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 99999999999 7899999999998877
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=2.9e-49 Score=392.07 Aligned_cols=302 Identities=41% Similarity=0.665 Sum_probs=261.8
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
.+||++.|+|+||+|+|||||||++||++.|++.+++.++++++|+++|+.+|+++|.++|++||+++++|+.|.+++++
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 57999999999999999999999999999999999999999999999999999988999999999999999777799999
Q ss_pred cCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 020300 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g 171 (328)
|++....++++|+++.|++++|++++++..+ +.||.|+.||+.|+++|.++.++++ ..+++|+|+++.+
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~~----~~~~~l~d~~~~~----- 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQW----DKVLRLEEVQAKL----- 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCCT----TTCCCHHHHHHHH-----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhcccc----cccchHHhhhhhh-----
Confidence 9998889999998899999999998765544 7899999999999999999987753 3457888886542
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 020300 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (328)
Q Consensus 172 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~ 251 (328)
..+..+|++.|++++.+.+++.+++.+.++....++.+.+++..++ ..+.+.+++|+.|++.|+.|+.+++++|.+.
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~- 372 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEA- 372 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 2334578899999998888888888888776555555544443332 2223457889999999999999999999971
Q ss_pred CchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 252 ~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
.++|++.||++|+++|+++|++|++++|++|+|++++++.|++|+||||||||||+++|++++.+++++++|++.|
T Consensus 373 -~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y 448 (478)
T 2a2c_A 373 -PENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAY 448 (478)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHH
Confidence 1246999999999999999999999999999999999999999999999999999999999988999999998865
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.1e-40 Score=325.29 Aligned_cols=252 Identities=29% Similarity=0.389 Sum_probs=215.9
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+|+++.++|+||+++|||||||+++|++.|++++++.++++++|+++|.++|+ ++|.|+|++||+++++||.+.+++++
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 78999999999999999999999999999999999999999999999999996 78999999999999999988888899
Q ss_pred cCCceEEEeecC-CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
+++..++++++| +++.+++++|++++ .+..+.||.|+.+|+.+++++.+..++ ..|+++..
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~~~---~t~~~~y~~r~~~~~~a~~~l~~~~~v---------~~l~~~~~------ 281 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNKPR---ALTESKYNERFAETREALKRMQTRLDI---------QSLGELSN------ 281 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCCCC---CTTCHHHHHHHHHHHHHHHHHHHHCCC---------SSGGGCCH------
T ss_pred cCCCceEEeecCCCCcEEEEEECCCcc---ccccchHHHHHHHHHHHHHHHhhcccc---------CchhhCCH------
Confidence 988888899987 68999999999954 455688999999999999988765321 23443211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+++..... ..+ .+..++|+.|++.|+.|+.+++++|.++
T Consensus 282 -----------------------~~~~~~~~--------~l~----------~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 282 -----------------------EEFDANTD--------LIG----------DETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp -----------------------HHHHHTGG--------GTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHh--------hcC----------cHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11211110 000 1135678899999999999999999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhC-CCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~-Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++|+++|.++++.|++++|+++.+++.+++. |++|+||||||||||+++|++++.++++++++++.|
T Consensus 321 d-----~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~ 394 (419)
T 1pie_A 321 N-----LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVY 394 (419)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHH
Confidence 5 999999999999999998899999999999999996 999999999999999999999888899999887654
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.6e-40 Score=322.20 Aligned_cols=248 Identities=29% Similarity=0.411 Sum_probs=211.5
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+|+++.++|+||+|+|||||||+++|++.|++++++.++++++|+++|.++|+ ++|.|||++||+++++||.+.++++
T Consensus 129 ~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~ 208 (399)
T 1wuu_A 129 LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLI 208 (399)
T ss_dssp CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999998 7899999999999999999888889
Q ss_pred ecCCceEEEeecCC-CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 91 d~~~~~~~~~~~~~-~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
++++..+.++++|. ++.+++++|++++ .+..+.||.|+.+|+.++++++.. .++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~vl~~~~~~~---~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~----- 267 (399)
T 1wuu_A 209 DCRSLETSLVPLSDPKLAVLITNSNVRH---SLASSEYPVRRRQCEEVARALGKE-------------SLREVQL----- 267 (399)
T ss_dssp ETTTCCEEEEECCCSSEEEEEEEEEEEC-----CTTTHHHHHHHHHHHHHHTTCS-------------STTSCCH-----
T ss_pred ecCCCceEEecCCCCCeEEEEEECCCcc---ccccccHHHHHHHHHHHHHHhChh-------------hhhcCCH-----
Confidence 98888888888874 8999999999854 466678999999999988776321 2333210
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
+++.+.+. . -.+..++|+.|.+.|+.|+.+++++|.+
T Consensus 268 ------------------------~~~~~~~~------------~-------l~~~~~~r~~~~~~e~~r~~~~~~al~~ 304 (399)
T 1wuu_A 268 ------------------------EELEAARD------------L-------VSKEGFRRARHVVGEIRRTAQAAAALRR 304 (399)
T ss_dssp ------------------------HHHTTGGG------------G-------SCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHh------------h-------cCHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 11110000 0 0013467889999999999999999998
Q ss_pred CCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~-~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
+| ++.||++|+++|+++++.+++++|++|++++.+++ .|++|+||||||||||+++|++++.++++++++++.|
T Consensus 305 ~d-----~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~ 379 (399)
T 1wuu_A 305 GD-----YRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379 (399)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh
Confidence 75 99999999999999998889999999999999999 7999999999999999999999888999999998866
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=1.8e-38 Score=301.69 Aligned_cols=244 Identities=23% Similarity=0.315 Sum_probs=207.1
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+|+++.++|+||+++|||||||+++|++.|++++++.++++++|+++|..+|. ++|.|+|++|++++.+|+.++++++
T Consensus 85 ~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~ 164 (350)
T 2cz9_A 85 VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFL 164 (350)
T ss_dssp CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEE
Confidence 378999999999999999999999999999999999999999999999999996 7899999999999999998889999
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
|+++..+.++++|+++.+++++|+++++ +....|+.|+.+|+.++++++. ..||++..
T Consensus 165 d~~~~~~~~l~~~~~~~~vl~~~~~~~~---~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~------ 222 (350)
T 2cz9_A 165 DTHTLDYEYIPFPKDVSILVFYTGVRRE---LASSEYAERKHIAEESLKILGK-------------GSSKEVRE------ 222 (350)
T ss_dssp ETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCG------
T ss_pred ecCCCcEEEEcCCCCcEEEEEECCCCCc---cccchHHHHHHHHHHHHHHhCh-------------hhhhhCCH------
Confidence 9988888899998899999999998642 3334599999999999877631 23444211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+++ . .++ ..++++..|.+.|..|+..++++|.++
T Consensus 223 -----------------------~~~-~----~l~------------------~~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (350)
T 2cz9_A 223 -----------------------GEL-S----KLP------------------PLHRKFFGYIVRENARVLEVRDALKEG 256 (350)
T ss_dssp -----------------------GGG-G----GSC------------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHH-h----hCC------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 000 0 000 113456778888888999999999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++|+++|+++++.+++++|+++++++.+++.|++|+||||||||||+++|++++.++++.+++++.|
T Consensus 257 d-----~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~ 329 (350)
T 2cz9_A 257 N-----VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREY 329 (350)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHH
Confidence 5 999999999999999998899999999999999999999999999999999999999888888888887653
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-37 Score=293.45 Aligned_cols=218 Identities=16% Similarity=0.213 Sum_probs=161.4
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+||++.+.++||.|+|||||||++||++.|++++++.++++++|+++|.++|+ ++|.|||.+||+++++||...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 469999999999999999999999999999999999999999999999999998 7899999999999999998755555
Q ss_pred ecCCceEEEeecCCC------ceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 020300 91 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (328)
Q Consensus 91 d~~~~~~~~~~~~~~------~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (328)
++.+..++++++|+. +.+++++|+.++++. +++.+..
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~------------------~~l~~~~------------------- 218 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSA------------------AIINEQK------------------- 218 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCcccHH------------------HHHHHHH-------------------
Confidence 666667778887753 578999998754311 1111100
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHH
Q 020300 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (328)
Q Consensus 165 ~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~ 244 (328)
+.+.+. +..+.++.|.+.| ++.+++
T Consensus 219 -------------------~~~~~~----------------------------------~~~~~~~~~~i~~--~~~~~~ 243 (357)
T 3k85_A 219 -------------------KNTSEG----------------------------------NQTAIEAMHKIKQ--SAIDTK 243 (357)
T ss_dssp ------------------------------------------------------------CCTTHHHHHHHH--HHHHHH
T ss_pred -------------------HHhhcC----------------------------------cHHHHHHHHHHHH--HHHHHH
Confidence 000000 0012344555554 778899
Q ss_pred HHHhcCCCchHhHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHH
Q 020300 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 323 (328)
Q Consensus 245 ~al~~~~~~~~~~~~~g~lm~~sh~~lr~~-~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~ 323 (328)
++|.++| ++.||++|+++|++++++ +++|+|++|+|++.+++.|++|+||||||+|||+++|++++.+++++++
T Consensus 244 ~aL~~~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~ 318 (357)
T 3k85_A 244 LALLKGD-----VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRA 318 (357)
T ss_dssp HHHTTTC-----HHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecHHHHHHHHHH
Confidence 9999875 999999999999999987 8999999999999999999999999999999999999988888999998
Q ss_pred HHh
Q 020300 324 LKV 326 (328)
Q Consensus 324 i~~ 326 (328)
|++
T Consensus 319 l~~ 321 (357)
T 3k85_A 319 LNN 321 (357)
T ss_dssp HHT
T ss_pred HHH
Confidence 875
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=6.1e-33 Score=268.52 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=168.1
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHhcc-ccCCcCCCch
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~-----~l~-------~---~~l~~la~~~E~-~~g~~~G~~D 75 (328)
.+||++.++|+||.|+|||||||++||++.|++++++. +++ + .+|+++|+.+|+ ++|.++|. |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999998 788 7 556677999998 78999998 9
Q ss_pred hhHHhhhccceEEEeecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 020300 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (328)
Q Consensus 76 ~~~~~~gg~~~~~~id~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~ 155 (328)
|+++++||. +++ ++..+++++.++++.+++++|++++++... +.
T Consensus 205 ~~~~~~Gg~---~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T~~~----~~--------------------------- 248 (395)
T 1kvk_A 205 NSVSTWGGA---LRY--QQGKMSSLKRLPALQILLTNTKVPRSTKAL----VA--------------------------- 248 (395)
T ss_dssp HHHHHHCSE---EEE--SSSCEEECSCCCCEEEEEEECCCCCCHHHH----HH---------------------------
T ss_pred hHHhhhcce---EEE--cCCCceeccCCCCcEEEEEECCCCCchHHH----HH---------------------------
Confidence 999999984 333 445677777777899999999997653221 00
Q ss_pred cccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHh
Q 020300 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (328)
Q Consensus 156 ~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~ 235 (328)
.+++.. .. . ++. -...++++.|++.
T Consensus 249 --~~~~~~-----------------------~~--~-------------~~~---------------~~~~~~~~~~~~~ 273 (395)
T 1kvk_A 249 --GVRSRL-----------------------IK--F-------------PEI---------------MAPLLTSIDAISL 273 (395)
T ss_dssp --HHHHHH-----------------------HH--S-------------HHH---------------HHHHHHHHHHHHH
T ss_pred --HHHHHH-----------------------HH--C-------------HHH---------------HHHHHHHHHHHHH
Confidence 000000 00 0 000 0124567788888
Q ss_pred HHHHHHHH-HHHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC
Q 020300 236 EAKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 314 (328)
Q Consensus 236 E~~r~~~~-~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~ 314 (328)
|+.|+... ++++.+ ++++.||++|+++|.++++ |++++|++|++++.+++.|+ |+||||||||||+++|+++
T Consensus 274 ~~~~~l~~~~~al~~-----~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~ 346 (395)
T 1kvk_A 274 ECERVLGEMAAAPVP-----EQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKP 346 (395)
T ss_dssp HHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECT
T ss_pred HHHHHHHhhhccccH-----HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecC
Confidence 88776654 455553 4799999999999999997 79999999999999999999 9999999999999999988
Q ss_pred CcHHHHHHHHHh
Q 020300 315 SIDSQFILNLKV 326 (328)
Q Consensus 315 ~~~~~~~~~i~~ 326 (328)
+..+++++++.+
T Consensus 347 ~~~~~~~~~~~~ 358 (395)
T 1kvk_A 347 GLERAKVEAAKQ 358 (395)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 766666665544
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=1.9e-32 Score=257.94 Aligned_cols=210 Identities=18% Similarity=0.147 Sum_probs=163.9
Q ss_pred cCcceeEEEEecCCCC---CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccc-cCCcCCCchhhHHhhhccce
Q 020300 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGF 86 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~-~g~~~G~~D~~~~~~gg~~~ 86 (328)
+++||++.|.|++|.+ +|||||||++||++.++++++++++++++++++|+.+|+. .|.++| +||+++++||.
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~-- 159 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL-- 159 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC--
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe--
Confidence 4589999999999987 6999999999999999999999999999999999999984 466555 99999999995
Q ss_pred EEEeecC---------------------CceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHh
Q 020300 87 AELIDFN---------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (328)
Q Consensus 87 ~~~id~~---------------------~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~ 145 (328)
+.|..+. +....+++.|..+.+++++++.++++...
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~----------------------- 216 (335)
T 3gon_A 160 VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM----------------------- 216 (335)
T ss_dssp EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH-----------------------
T ss_pred EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHHH-----------------------
Confidence 3232221 12456667777899999999986542211
Q ss_pred CCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHH
Q 020300 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 225 (328)
Q Consensus 146 ~~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
++.+++. ..
T Consensus 217 ---------------------------------v~~v~~~-----~~--------------------------------- 225 (335)
T 3gon_A 217 ---------------------------------VQQIKQN-----IN--------------------------------- 225 (335)
T ss_dssp ---------------------------------HHHHGGG-----CC---------------------------------
T ss_pred ---------------------------------HHHHHHH-----hH---------------------------------
Confidence 0000000 00
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCcEEEEeCcCC
Q 020300 226 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGW 304 (328)
Q Consensus 226 ~~~r~~~~v~E~~r~~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~-~~vs~p~ld~l~~~a~~~Ga~GakisGaG~ 304 (328)
-.++.....++.++.++|.++| ++.||++|+++|++|+++ +++++|++|+|++++++.|+ |+|||||||
T Consensus 226 ----~~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~ 295 (335)
T 3gon_A 226 ----QNFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGG 295 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCS
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccc
Confidence 0011122356778889999875 999999999999999997 48999999999999999985 899999999
Q ss_pred cceeEEEEeC-CcHHHHHHHHHhh
Q 020300 305 GGCVVALVKE-SIDSQFILNLKVL 327 (328)
Q Consensus 305 GG~v~~L~~~-~~~~~~~~~i~~~ 327 (328)
|||+++|+++ +.+++++++|++.
T Consensus 296 Ggc~ial~~~~~~~~~i~~~~~~~ 319 (335)
T 3gon_A 296 GDCGIALSFDAQSTKTLKNRWADL 319 (335)
T ss_dssp SSEEEEEECSHHHHHHHHHHHHHT
T ss_pred hheEEEEECCHHHHHHHHHHHHHC
Confidence 9999999975 4577888888764
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=9.4e-32 Score=257.87 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=167.2
Q ss_pred CcceeEEEEecCCC----CCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccce
Q 020300 12 FQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (328)
Q Consensus 12 ~~g~~i~i~s~iP~----g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~ 86 (328)
.+||++.|+|+||. ++|||||||++||++.|+++++++++++++|+++|+.+|+ +.| ++|++||+++++||.
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~-- 172 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGW-- 172 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSE--
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCE--
Confidence 47999999999996 5799999999999999999999999999999999999998 567 677799999999994
Q ss_pred EEEee-cC----------------------CceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHH
Q 020300 87 AELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (328)
Q Consensus 87 ~~~id-~~----------------------~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~ 143 (328)
+++. +. ...++++++|++ .+++++|++++++... .
T Consensus 173 -~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~---------------~----- 230 (365)
T 3k17_A 173 -IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKL---------------V----- 230 (365)
T ss_dssp -EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHH---------------H-----
T ss_pred -EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHHH---------------H-----
Confidence 3333 22 346778888878 9999999997643211 0
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhh
Q 020300 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (328)
Q Consensus 144 ~~~~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
+.++++....
T Consensus 231 ------------------------------------~~v~~~~~~~---------------------------------- 240 (365)
T 3k17_A 231 ------------------------------------SQIHAFKQED---------------------------------- 240 (365)
T ss_dssp ------------------------------------HHHHHHHHHC----------------------------------
T ss_pred ------------------------------------HHHHHHHHhC----------------------------------
Confidence 0000110000
Q ss_pred HHHHHHHhhHHhHH-HHHHHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCC------CChhHHHHHHHHHhCCCcE
Q 020300 224 YKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------SCPELEELVNVCRNNGALG 296 (328)
Q Consensus 224 ~~~~~r~~~~v~E~-~r~~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~v------s~p~ld~l~~~a~~~Ga~G 296 (328)
-++..+++.|. .++.+++++|.++| ++.||++|+++|++|+++ ++ ++|++|+|++.+++.|++
T Consensus 241 ---~~~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~l-~v~~~~~is~p~ld~l~~~a~~~Ga~- 310 (365)
T 3k17_A 241 ---SKNYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQEL-GTKAGVNIETSLLKELADSAENMGGA- 310 (365)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHH-HHHHTCCCSCHHHHHHHHHHHHTTSE-
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHh-hhhcCCcccCHHHHHHHHHHHhcCCE-
Confidence 01123455664 45688999999875 999999999999999985 55 999999999999999998
Q ss_pred EEEeCcCCcceeEEEEeC-CcHHHHHHHHHh
Q 020300 297 ARLTGAGWGGCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 297 akisGaG~GG~v~~L~~~-~~~~~~~~~i~~ 326 (328)
+||||||||||+++|+++ +.++++.+++++
T Consensus 311 ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 311 GKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp EEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred EEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999987 457888888775
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.98 E-value=1.8e-31 Score=253.34 Aligned_cols=210 Identities=16% Similarity=0.130 Sum_probs=168.0
Q ss_pred cCcceeEEEEecCCCC---CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceE
Q 020300 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~ 87 (328)
+.+||+++|+|+||.+ +|||||||++||++.|++++++.++++++|+++|+.+|.+.|.++|++|++++++||..
T Consensus 85 ~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~-- 162 (337)
T 2pg9_A 85 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV-- 162 (337)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCE--
T ss_pred CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEE--
Confidence 4579999999999999 99999999999999999999999999999999999999878999999999999999963
Q ss_pred EEe--ecC-------------------CceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhC
Q 020300 88 ELI--DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (328)
Q Consensus 88 ~~i--d~~-------------------~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~ 146 (328)
.+. +.. +..++++++|.++.+++++|++++++... .+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~~---------------~~~~----- 222 (337)
T 2pg9_A 163 LYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM---------------VQQI----- 222 (337)
T ss_dssp EEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH---------------HHHH-----
T ss_pred EEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchHHH---------------HHHH-----
Confidence 222 221 23567788888899999999986543211 0000
Q ss_pred CCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHH
Q 020300 147 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 226 (328)
Q Consensus 147 ~~~~~~~~~~~~L~~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
+. . +. ++ .
T Consensus 223 ----------------~~--------------------~-----~~-~~------------------------------~ 230 (337)
T 2pg9_A 223 ----------------KQ--------------------N-----IN-QN------------------------------F 230 (337)
T ss_dssp ----------------GG--------------------G-----CC-HH------------------------------H
T ss_pred ----------------HH--------------------H-----HH-HH------------------------------H
Confidence 00 0 00 00 0
Q ss_pred HHHHhhHHhHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHhCCCcEEEEeCcCCc
Q 020300 227 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWG 305 (328)
Q Consensus 227 ~~r~~~~v~E~~r~~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~-~vs~p~ld~l~~~a~~~Ga~GakisGaG~G 305 (328)
..+. ..++.+++++|.++| ++.||++|+++|++++++. ++++|++|+|++.+++.|++ +||||||||
T Consensus 231 ~~~~------~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgG 298 (337)
T 2pg9_A 231 LTSS------KETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGG 298 (337)
T ss_dssp HHHH------HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSS
T ss_pred HHHH------HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCc
Confidence 0111 235667888998875 9999999999999999884 49999999999999999999 999999999
Q ss_pred ceeEEEEeC-CcHHHHHHHHHh
Q 020300 306 GCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 306 G~v~~L~~~-~~~~~~~~~i~~ 326 (328)
||+++|+++ +.++++.++|++
T Consensus 299 g~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 299 DCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp SEEEEEECSHHHHHHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHH
Confidence 999999976 457888888765
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.97 E-value=8.9e-31 Score=244.77 Aligned_cols=213 Identities=21% Similarity=0.259 Sum_probs=165.2
Q ss_pred cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEE
Q 020300 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~ 89 (328)
.++|+++.++++||+++|||||||+++|++.|++++++.++++++|+++|.++|+ ++|.|+|. |+.++.+|| .++
T Consensus 83 ~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g~---~~~ 158 (308)
T 2x7i_A 83 ITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSGK---PVW 158 (308)
T ss_dssp CCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHTS---CEE
T ss_pred hCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCCc---eEE
Confidence 3469999999999999999999999999999999999999999999999999998 77999984 999888888 345
Q ss_pred eecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
++ +...++++++|.++.+++++|+.+.++... + +.+++
T Consensus 159 ~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~----~-----------------------------~~l~~-------- 196 (308)
T 2x7i_A 159 FQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA----V-----------------------------HDVHK-------- 196 (308)
T ss_dssp EE-TTEEEECSCCCBSSEEEEEECCC--CCSCC----C-----------------------------C------------
T ss_pred EE-cCCCceEeccCCCceEEEEECcCCCCHHHH----H-----------------------------HHHHH--------
Confidence 55 334456666666789999999886443211 0 00110
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
..+.. + ..++ ..++ ..++.+++++|.+
T Consensus 197 ---------------~~~~~----~------------------------------~~~~-~~~~---~~~~~~~~~al~~ 223 (308)
T 2x7i_A 197 ---------------LCEDP----Q------------------------------YMSH-VKHI---GKLVLRASDVIEH 223 (308)
T ss_dssp -------------------C----C------------------------------HHHH-HHHH---HHHHHHHHHHHHT
T ss_pred ---------------HHhcC----c------------------------------hHHH-HHHH---HHHHHHHHHHHHc
Confidence 00000 0 0011 1221 1356677888987
Q ss_pred CCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhhC
Q 020300 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVLF 328 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~y 328 (328)
+| ++.|+++|+++|+.+++ +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+++++.|
T Consensus 224 ~d-----~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 224 HK-----FEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp TC-----HHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CC-----HHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 74 99999999999999998 4999999999999999999999999999999999999987 67888998887754
No 12
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.97 E-value=8.8e-30 Score=240.41 Aligned_cols=214 Identities=25% Similarity=0.344 Sum_probs=166.2
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEee
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
+|+++.++|+||.++|||||||+++|++.|++++++.++++++|+++|+++|. ++|.++|. |++++++||. ++.+
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEe
Confidence 68999999999999999999999999999999999999999999999999998 77999986 9999999994 3443
Q ss_pred c-CC-ceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 020300 92 F-NP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (328)
Q Consensus 92 ~-~~-~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (328)
. .. ..+.++++|+++.+++++|+.+.++... ++.. ..+++.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~~------------------~~~~------------~~~~~~------- 214 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAKV------------------VNDV------------HKMKQQ------- 214 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSCCCCHHHH------------------HHHH------------HHHHHH-------
T ss_pred cCCCCcceeeecCCCCcEEEEEECCCCccHHHH------------------HHHH------------HHHHHh-------
Confidence 2 22 2567888877899999999986543211 1000 000000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 020300 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (328)
Q Consensus 170 ~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~ 249 (328)
+.+.+. .+++++.+ ++.+++++|.+
T Consensus 215 ----------------------~~~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 215 ----------------------QPVQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp ----------------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ----------------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 000000 01222222 34566788887
Q ss_pred CCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCC-cHHHHHHHHHhhC
Q 020300 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKVLF 328 (328)
Q Consensus 250 ~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~-~~~~~~~~i~~~y 328 (328)
+| ++.|+++|+++|..++.. ++++|+++++++.+++.|++|+||||+|+|||+++|++++ .++++.+++.+.|
T Consensus 240 ~d-----~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~ 313 (332)
T 2hfs_A 240 GD-----LQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKC 313 (332)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CC-----HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHH
Confidence 64 999999999999988874 8999999999999999999999999999999999999875 4678888887654
No 13
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.97 E-value=1e-29 Score=239.63 Aligned_cols=209 Identities=27% Similarity=0.247 Sum_probs=159.6
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+||++.++++||+++|||||||+++|++.|++++++.++++++|+++|.++|+ +.|. +|++|++++++||. +++
T Consensus 95 ~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg~---~~~ 170 (321)
T 4hac_A 95 INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGGV---VTI 170 (321)
T ss_dssp CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCSE---EEE
T ss_pred CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCCe---EEE
Confidence 479999999999999999999999999999999999999999999999999997 6687 67899999999994 344
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
.+. +.+.+| ++.+++++|++++++... ....+.++..
T Consensus 171 -~~~---~~l~~p-~~~~vlv~p~~~~sT~~~------------~~~~~~l~~~-------------------------- 207 (321)
T 4hac_A 171 -PER---RKLKTP-DCGIVIGDTGVFSSTKEL------------VANVRQLRES-------------------------- 207 (321)
T ss_dssp -TTC---CEECCC-CCEEEEEECCCCCCHHHH------------HHHHHHHHHH--------------------------
T ss_pred -cCC---ceeccC-CCEEEEEECCCCccHHHH------------HHHHHHHHhc--------------------------
Confidence 221 233456 899999999987643211 0000000000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
. .+.+.. ...+.. ..+.+++++|.++
T Consensus 208 --------------------~-~~~~~~---------------------------~~~~~~------~~~~~~~~al~~~ 233 (321)
T 4hac_A 208 --------------------Y-PDLIEP---------------------------LMTSIG------KISRIGEQLVLSG 233 (321)
T ss_dssp --------------------C-HHHHHH---------------------------HHHHHH------HHHHHHHHHHHHT
T ss_pred --------------------C-HHHHHH---------------------------HHHHHH------HHHHHHHHHHHhC
Confidence 0 000000 011111 1234567888876
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhh
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~ 327 (328)
| ++.||++|+++|..++ .+++++|+++++++.+++.|++|+||||+|+|||+++|++++.++++.+++++.
T Consensus 234 d-----~~~lg~~~~~~~~~~~-~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~ 304 (321)
T 4hac_A 234 D-----YASIGRLMNVNQGLLD-ALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA 304 (321)
T ss_dssp C-----HHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC
Confidence 4 9999999999987655 469999999999999999999999999999999999999777889999888764
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.97 E-value=2.9e-29 Score=232.30 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=157.9
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+|+++.++++||.++|||||||+++|++.|++++++.+++.++|+++|.++|+ .++.|+|+ |++++.+||. + ++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~--~-~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP--I-RF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC--E-EE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce--E-EE
Confidence 368999999999999999999999999999999999999999999999999997 67999995 9999999984 3 33
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
.+....++++++....+++++++++.++... .+.+....
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~~---------------~~~l~~~~------------------------- 186 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGVYGHTREA---------------IQVVQNKG------------------------- 186 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSSCCCHHHH---------------HHHHHHTG-------------------------
T ss_pred -EcCCCceeecCCCCCEEEEEECCCCCcHHHH---------------HHHHHHHH-------------------------
Confidence 3334456666543333889999876543211 00000000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+. .++..+.+. ..+.+++++|.++
T Consensus 187 ----------------~~--------------------------------------~~~~~~~~~--~~~~~~~~al~~~ 210 (292)
T 2oi2_A 187 ----------------KD--------------------------------------ALPFLHALG--ELTQQAEIAISQK 210 (292)
T ss_dssp ----------------GG--------------------------------------GHHHHHHHH--HHHHHHHHHHHTT
T ss_pred ----------------hh--------------------------------------hHHHHHHHH--HHHHHHHHHHHcC
Confidence 00 001111111 1244567888877
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~~y 328 (328)
| ++.|+++|+++|+.+++ +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+++++.|
T Consensus 211 d-----~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~ 283 (292)
T 2oi2_A 211 D-----AEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKG 283 (292)
T ss_dssp C-----HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcC
Confidence 4 99999999999999998 4899999999999999999999999999999999999987 67888888887654
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.96 E-value=4.2e-28 Score=227.48 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=155.7
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhhHHhhhccceEEEe
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
.+|+++.++++||.++|||||||+++|++.|++++++.++++++|+++|.++|+ ++|.++| +|++++++||. + ++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~--~-~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI--L-EI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE--E-EE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe--E-EE
Confidence 379999999999999999999999999999999999999999999999999997 6788765 89999999984 3 33
Q ss_pred ecCCceEEEeecC--C----CceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 020300 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (328)
Q Consensus 91 d~~~~~~~~~~~~--~----~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (328)
++..+++++++ + ++.+++++|+.+.++... + +.+. .+++
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~-------~--------~~~~---------------~~~~--- 217 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL-------V--------NEVA---------------KIEN--- 217 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHH-------H--------HHHH---------------TCTT---
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCCcCcHHHH-------H--------HHHH---------------Hhhc---
Confidence 34456666543 1 268999999986543210 0 0000 0000
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHH
Q 020300 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (328)
Q Consensus 165 ~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~ 244 (328)
.. ...++. .+ .+.
T Consensus 218 ----------------------------~~------------------------------~~~~~~-------~~--~~~ 230 (317)
T 1kkh_A 218 ----------------------------KD------------------------------EIFKEI-------DK--VID 230 (317)
T ss_dssp ----------------------------HH------------------------------HHHHHH-------HH--HHH
T ss_pred ----------------------------cH------------------------------HHHHHH-------HH--HHH
Confidence 00 000111 11 123
Q ss_pred HHHhcCCCchHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHH
Q 020300 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 324 (328)
Q Consensus 245 ~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i 324 (328)
+++..+ |++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||+|+|||+++|++++.++++.+++
T Consensus 231 ~a~~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l 303 (317)
T 1kkh_A 231 EALKIK-----NKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKEL 303 (317)
T ss_dssp HHHHCC-----SHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHH
T ss_pred HHHHcC-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHH
Confidence 456655 499999999999998886 4999999999999999999 999999999999999999887788899888
Q ss_pred Hhh
Q 020300 325 KVL 327 (328)
Q Consensus 325 ~~~ 327 (328)
++.
T Consensus 304 ~~~ 306 (317)
T 1kkh_A 304 NKE 306 (317)
T ss_dssp HTS
T ss_pred Hhc
Confidence 753
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.95 E-value=1.2e-26 Score=215.30 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=159.7
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCcCCCchhh-HHhhhccceEEEe
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA-ISIMAKSGFAELI 90 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~g~~~G~~D~~-~~~~gg~~~~~~i 90 (328)
+|+++.++++||+++|||||||+++|++.|++++++.++++++|+++|.++|. ..|.++ +|++ ++++||+ +++.
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~--~ddv~~~~~gg~--~~~~ 150 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKH--ADNVAPAIFGGF--TMVT 150 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCC--CTTHHHHHHCSE--EEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCC--ccchHHHHhCCE--EEEE
Confidence 58999999999999999999999999999999999999999999999999997 668877 4555 5899985 4444
Q ss_pred ecCCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
+..+..+.++++|+++.+++++|+++.++... .+ .|
T Consensus 151 ~~~~~~~~~~~~~~~~~~vl~~p~~~~~T~~~---------------~~------------------~l----------- 186 (296)
T 1h72_C 151 NYEPLEVLHIPIDFKLDILIAIPNISINTKEA---------------RE------------------IL----------- 186 (296)
T ss_dssp ETTTTEEEEECCCSCCCEEEECCSSCCCHHHH---------------HH------------------TS-----------
T ss_pred eCCceEEEEEcCCCCeEEEEEeCCCCccHHHH---------------HH------------------hc-----------
Confidence 55555678888888899999999875332110 00 00
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
++. + +..+.+.+..|+.+++++|.++
T Consensus 187 ----------------~~~-~-------------------------------------~~~~~~~~~~~~~~~~~al~~~ 212 (296)
T 1h72_C 187 ----------------PKA-V-------------------------------------GLKDLVNNVGKACGMVYALYNK 212 (296)
T ss_dssp ----------------CSC-C-------------------------------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------cCc-C-------------------------------------cHHHHHHHHHHHHHHHHHHHcC
Confidence 000 0 0113344455667788899877
Q ss_pred CCchHhHHHHHHHH--HHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHhhC
Q 020300 251 LSEEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 251 ~~~~~~~~~~g~lm--~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~~y 328 (328)
| ++.||++| ++.|+.++. .++|+++++++.+++. ++|++|||+|+ |+++|++++.++++.+++++.|
T Consensus 213 d-----~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG~--~v~~l~~~~~~~~~~~~l~~~~ 281 (296)
T 1h72_C 213 D-----KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSGP--SIIAFPKEEFIDEVENILRDYY 281 (296)
T ss_dssp C-----HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTSS--CEEEEECGGGHHHHHHHHHHHC
T ss_pred C-----HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCCh--heEEEecHHHHHHHHHHHHHhc
Confidence 5 99999999 667787774 5999999999999998 89999999986 9999996677889999988765
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.89 E-value=5.5e-22 Score=184.97 Aligned_cols=199 Identities=18% Similarity=0.203 Sum_probs=141.5
Q ss_pred cCcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEe
Q 020300 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (328)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~i 90 (328)
..+|+++.++++||.++|||||||+++|++.|++++++.++++++|+++|.++| |. ..|...+++||+. +.
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e---g~---~ddv~~~~~GG~~---~~ 138 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE---GH---PDNVAPAVLGNWV---VG 138 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---SC---STTHHHHHHCSEE---EE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---CC---cccCcccccCCEE---EE
Confidence 347999999999999999999999999999999999999999999999999998 22 1345567899952 33
Q ss_pred ecCC--ceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhh
Q 020300 91 DFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (328)
Q Consensus 91 d~~~--~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~ 168 (328)
..+. ..+.++++| ++.+++++|+.+.++... | + .|+
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~a----~-----------~------------------~l~-------- 176 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAELLTSES----R-----------G------------------VLP-------- 176 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCCC-----------------------------------------C--------
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCCCcHHH----H-----------H------------------HHh--------
Confidence 3222 233466665 599999999874322110 0 0 000
Q ss_pred hhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHh
Q 020300 169 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 248 (328)
Q Consensus 169 ~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~ 248 (328)
+. ++. . ..+.+..++..++.+|.
T Consensus 177 -------------------~~-~~~----------------------------------~---~~~~~~~~~~~~~~al~ 199 (298)
T 3hul_A 177 -------------------DT-LPF----------------------------------K---EAVQASSIANVMIAAIL 199 (298)
T ss_dssp -------------------CE-EEH----------------------------------H---HHHHHHHHHHHHHHHHT
T ss_pred -------------------hh-ccH----------------------------------H---HHHHHHHHHHHHHHHHH
Confidence 00 000 0 01122235566788898
Q ss_pred cCCCchHhHHHHHHHHH-H-HHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeCCcHHHHHHHHHh
Q 020300 249 SNLSEEDKLKKLGDLMN-D-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 249 ~~~~~~~~~~~~g~lm~-~-sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~~~~i~~ 326 (328)
++| ++.|+++|+ + .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++.++++.+++++
T Consensus 200 ~~d-----~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~~ 269 (298)
T 3hul_A 200 RND-----MTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQT 269 (298)
T ss_dssp TTC-----HHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHHHHHT
T ss_pred cCC-----HHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHHHHHh
Confidence 775 999999997 3 47777754 58999999999999999999999888 589999987778888888875
Q ss_pred h
Q 020300 327 L 327 (328)
Q Consensus 327 ~ 327 (328)
.
T Consensus 270 ~ 270 (298)
T 3hul_A 270 L 270 (298)
T ss_dssp T
T ss_pred c
Confidence 4
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.87 E-value=2.3e-21 Score=181.46 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=142.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.++++||.++|||||||.++|++.|++++++.++++++|+++|.++| .|..++++||. .+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~Gg~---~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGGT---ALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHBSE---EEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecCce---EEEEe
Confidence 5899999999999999999999999999999999999999999999999987 58889999994 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~g~ 172 (328)
+...+.+++.+++|.+++++|+++.+|... | +.+... +
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~~vsT~~a----~-----------~~l~~~---------------~------------ 192 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADSGLLTSAV----Y-----------NELDRL---------------R------------ 192 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSSCCCHHHH----H-----------HHHHHH---------------H------------
T ss_pred eCCeEEEccCCCCcEEEEEECCCCCcHHHH----H-----------Hhhhhh---------------c------------
Confidence 444567888878899999999985443211 0 000000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcCCC
Q 020300 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (328)
Q Consensus 173 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~~~ 252 (328)
... + +....++..+..+|.++|
T Consensus 193 --------------~~~----------------~---------------------------~~~~~~~~~~~~al~~~d- 214 (306)
T 3pyf_A 193 --------------EVG----------------D---------------------------PPRLGEPGPVLAALAAGD- 214 (306)
T ss_dssp --------------HHS----------------C---------------------------CCCCCCHHHHHHHHHHTC-
T ss_pred --------------ccc----------------c---------------------------cccccCHHHHHHHHHhCC-
Confidence 000 0 000012344567777664
Q ss_pred chHhHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCcEEEEeCcCCcceeEEEEeC-CcHHHHHHHHHh
Q 020300 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKV 326 (328)
Q Consensus 253 ~~~~~~~~g~lm~~sh~~lr~~~~vs~p~ld~l~~~a~~~Ga~GakisGaG~GG~v~~L~~~-~~~~~~~~~i~~ 326 (328)
++.|++.|....+..+. ..+|+++++++.+++.|++|++|||+| +|+++|++. +.++++.+++++
T Consensus 215 ----~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~ 280 (306)
T 3pyf_A 215 ----PDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG 280 (306)
T ss_dssp ----HHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh
Confidence 99999888422222322 258999999999999999999999887 799999976 457788887765
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.86 E-value=4.2e-20 Score=173.28 Aligned_cols=200 Identities=16% Similarity=0.099 Sum_probs=138.8
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.++++||.++|||||||+++|++.|++++++.+++.++|+++|.+++ | +...+++||+ .+...
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~---G------~~~~~~~GG~---~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFAS---G------SSSRSFFGPV---AAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---G------GGGGGGSCSE---EEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhc---c------hhHhhhcCCh---heEee
Confidence 6899999999999999999999999999999999999999999999998865 2 3456789984 23333
Q ss_pred CCceEEEeecCCCceEEEE--ecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 020300 93 NPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~--~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (328)
........++|.++.++++ +++.+. ....+.|+.. +
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~~~---~~tt~~~~~~----------~----------------------------- 196 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAKKP---ISSREGMKLC----------R----------------------------- 196 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSSCC---SCHHHHHHHH----------H-----------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCCcC---cccHHHHHHH----------h-----------------------------
Confidence 3333344566656775444 443311 1111111100 0
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHHHHhcC
Q 020300 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (328)
Q Consensus 171 g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~al~~~ 250 (328)
+.. . ...+++.+. ..|+..++.+|.++
T Consensus 197 ----------------~~~-~---------------------------------~~~~~~~~~---~~~~~~~~~al~~~ 223 (317)
T 2gs8_A 197 ----------------DTS-T---------------------------------TFDQWVEQS---AIDYQHMLTYLKTN 223 (317)
T ss_dssp ----------------HHC-T---------------------------------THHHHHHHH---HHHHHHHHHHHHTT
T ss_pred ----------------hcC-H---------------------------------HHHHHHHHH---HHHHHHHHHHHHcC
Confidence 000 0 001122221 35777888999987
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCC-------ChhHHHHHHHH---HhCCCcEEEEeCcCCcceeEEEEeCCcHHHH
Q 020300 251 LSEEDKLKKLGDLMNDSHHSCSVLYECS-------CPELEELVNVC---RNNGALGARLTGAGWGGCVVALVKESIDSQF 320 (328)
Q Consensus 251 ~~~~~~~~~~g~lm~~sh~~lr~~~~vs-------~p~ld~l~~~a---~~~Ga~GakisGaG~GG~v~~L~~~~~~~~~ 320 (328)
| ++.||++|+++|..|++.+..+ .|.+.++++.+ ++.|+.++.++|+| +|+++|++++.++++
T Consensus 224 d-----~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~~~~~v 296 (317)
T 2gs8_A 224 N-----FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEKDLAQL 296 (317)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGGGHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHHHHHHH
Confidence 5 9999999999999888866444 45556766543 44899999999876 799999988778888
Q ss_pred HHHHHh
Q 020300 321 ILNLKV 326 (328)
Q Consensus 321 ~~~i~~ 326 (328)
.+++++
T Consensus 297 ~~~l~~ 302 (317)
T 2gs8_A 297 AERLGK 302 (317)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888765
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.84 E-value=1.8e-19 Score=170.38 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=141.6
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.|+++.++++||.++|||||||.++|++.|++++++++++.++|+++|.++| .|-..+++||+ + +...
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~---------g~~~~~~~GG~--~-~~~~ 160 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS---------GSASRSIFGGF--A-EWEK 160 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---------GGGGGGGSCSE--E-EEEC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---------CCchhhhcCCe--E-EEec
Confidence 5899999999999999999999999999999999999999999999999975 24566889995 2 3322
Q ss_pred -CC---ceEEEee---cCCCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 020300 93 -NP---IRTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (328)
Q Consensus 93 -~~---~~~~~~~---~~~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (328)
.. ....+++ .++++.++++.|+....+..+ |. .++..
T Consensus 161 g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~~--------~~~~~--------------------- 204 (332)
T 3qt5_A 161 GHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------RS--------GMSLT--------------------- 204 (332)
T ss_dssp CSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------HH--------HHHHH---------------------
T ss_pred CCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------HH--------HHHHh---------------------
Confidence 11 1234554 334788888888764221111 10 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHH-HHHHHHH
Q 020300 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA-KRVHAFK 244 (328)
Q Consensus 166 ~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~-~r~~~~~ 244 (328)
++.. .. ...+. .+. .++..++
T Consensus 205 --------------------~~~s-~~---------------------------------~~~~v----~~~~~~~~~l~ 226 (332)
T 3qt5_A 205 --------------------RDTS-RF---------------------------------YQYWL----DHVDEDLNEAK 226 (332)
T ss_dssp --------------------HHHC-TT---------------------------------HHHHH----HHHHHHHHHHH
T ss_pred --------------------hhcC-hh---------------------------------HHHHH----HHHHHHHHHHH
Confidence 0000 00 00011 112 2677788
Q ss_pred HHHhcCCCchHhHHHHHHHHHHHH----HHhhhhcC---CCChhHHHHHHHHH---hCCCcEEEEeCcCCcceeEEEEeC
Q 020300 245 DTVSSNLSEEDKLKKLGDLMNDSH----HSCSVLYE---CSCPELEELVNVCR---NNGALGARLTGAGWGGCVVALVKE 314 (328)
Q Consensus 245 ~al~~~~~~~~~~~~~g~lm~~sh----~~lr~~~~---vs~p~ld~l~~~a~---~~Ga~GakisGaG~GG~v~~L~~~ 314 (328)
.||.++| ++.|+++|..++ +.++..+. ..+|+++++++.+. +.|++|+.++|+| +++++|+++
T Consensus 227 ~Al~~~D-----~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~ 299 (332)
T 3qt5_A 227 EAVKNQD-----FQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVLVEK 299 (332)
T ss_dssp HHHHHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEEECH
Confidence 9999875 999999998544 44443321 15799999999885 7899999999776 799999988
Q ss_pred CcHHHHHHHHHhhC
Q 020300 315 SIDSQFILNLKVLF 328 (328)
Q Consensus 315 ~~~~~~~~~i~~~y 328 (328)
+.++++.+++++.|
T Consensus 300 ~~a~~v~~~l~~~~ 313 (332)
T 3qt5_A 300 KNKQAVMEQFLKVF 313 (332)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 78889999988754
No 21
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.80 E-value=1.2e-19 Score=166.70 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=79.2
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.++++||+++|||||||.++|++.|++++++.+++.++|+++|.++| .|..++++||+ .+...
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e---------~dv~~~~~gg~---~~~~g 147 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS---------ADAPFFLLGKS---AIGRG 147 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC---------TTTGGGGTCSE---EEEET
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHHhcCCe---EEEEE
Confidence 6899999999999999999999999999999999999999999999999988 37888899984 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcc
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~ 117 (328)
+...+.++++|.++.+++++|+.+.
T Consensus 148 ~g~~~~~l~~~~~~~~vl~~p~~~~ 172 (271)
T 2v8p_A 148 KGEVLEPVETEISGKITLVIPQVSS 172 (271)
T ss_dssp TTTEEEECCCCCCSEEEEEECSSCC
T ss_pred cCCEEEEccCCCCcEEEEEeCCCCC
Confidence 4445667774448999999998743
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.80 E-value=1.4e-19 Score=166.53 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=76.5
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.++++||.++|||||||+++|++.|++++++.++ +|+++|.++| .|..++++||+ .+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g---------~dv~~~~~Gg~---~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG---------ADVPFFLLGRG---AEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC---------TTHHHHHHCSE---EEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC---------CChHHHhcCCe---EEEEc
Confidence 689999999999999999999999999999999999888 8999999886 38999999984 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
+...+.+++ ++++.+++++|+.+.+
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~~~s 164 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGLRVP 164 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCCCCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCCCCc
Confidence 445667777 5689999999987543
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.77 E-value=4.8e-17 Score=158.19 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=136.3
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
..|+++.++++||.++|||||||.++|++.|++++++++++.++|+++|.+.+ .+...+++||+. ..+
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~---------Gs~~~sl~GG~v---~~~ 188 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS---------GSACRSLFGGYV---AWE 188 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH---------GGGGGGGSSSEE---EEE
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---------CchheEeeCCcE---EEe
Confidence 36899999999999999999999999999999999999999999999998764 245668999952 332
Q ss_pred cC------CceEEEeecC---CCceEE--EEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 020300 92 FN------PIRTTDVQLP---AGGTFV--VAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (328)
Q Consensus 92 ~~------~~~~~~~~~~---~~~~~v--l~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~ 160 (328)
.. .....+++.+ +++.++ +.+++.. .......|+.++
T Consensus 189 ~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~---~~sst~~~~~~~----------------------------- 236 (416)
T 1fi4_A 189 MGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKK---DVSSTQGMQLTV----------------------------- 236 (416)
T ss_dssp CCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSC---CCCHHHHHHHHH-----------------------------
T ss_pred cCCcCCCCCceeEEecCccCCcccEEEEEEECCCCC---CcCCHHHHHHHh-----------------------------
Confidence 21 1234455432 356643 3343321 111001110000
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHH
Q 020300 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (328)
Q Consensus 161 ~v~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~ 240 (328)
+.. . ....++.++. ..|+
T Consensus 237 --------------------------~~~-~---------------------------------~~~~~~~~i~--~~~~ 254 (416)
T 1fi4_A 237 --------------------------ATS-E---------------------------------LFKERIEHVV--PKRF 254 (416)
T ss_dssp --------------------------HHC-S---------------------------------HHHHHHHTHH--HHHH
T ss_pred --------------------------hcC-H---------------------------------hHHHHHHHHH--HHHH
Confidence 000 0 0001222211 2467
Q ss_pred HHHHHHHhcCCCchHhHHHHHHHHHHHHHHhhhhcC-------CCChhHHHHHHHHHh----CC-CcEEEEeCcCCccee
Q 020300 241 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE-------CSCPELEELVNVCRN----NG-ALGARLTGAGWGGCV 308 (328)
Q Consensus 241 ~~~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~~~~-------vs~p~ld~l~~~a~~----~G-a~GakisGaG~GG~v 308 (328)
..++.||.++| ++.||++|.++|..+.+.+- ...|....+++.+.+ .| +.++.++|+| +++
T Consensus 255 ~~l~~AL~~gD-----~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv 327 (416)
T 1fi4_A 255 EVMRKAIVEKD-----FATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNA 327 (416)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCE
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcE
Confidence 77889999875 99999999887777766432 345677888877644 38 7888899877 699
Q ss_pred EEEEeCCcHHHHHHHHHhhC
Q 020300 309 VALVKESIDSQFILNLKVLF 328 (328)
Q Consensus 309 ~~L~~~~~~~~~~~~i~~~y 328 (328)
++|++++.++++.+++++.|
T Consensus 328 ~al~~~~~~~~v~~~l~~~~ 347 (416)
T 1fi4_A 328 VLYYLAENESKLFAFIYKLF 347 (416)
T ss_dssp EEEEEGGGHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhc
Confidence 99998777788888887654
No 24
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.73 E-value=8.4e-18 Score=155.50 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=79.2
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
+|+++.++++||+++|||||||+++|++.|++++++.+++.++|+++|.++| .|..++++||+ .+...
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e---------~dv~~~~~gg~---~~~~g 155 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG---------ADVPVFVRGHA---AFAEG 155 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC---------TTHHHHHHTBC---EEEET
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999988 38889999995 34444
Q ss_pred CCceEEEeecCCCceEEEEecCCcch
Q 020300 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (328)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~s~~~~~ 118 (328)
....+.++++| ++.+++++|+++.+
T Consensus 156 ~g~~~~~l~~~-~~~~vl~~p~~~~s 180 (283)
T 2ww4_A 156 VGEILTPVDPP-EKWYLVAHPGVSIP 180 (283)
T ss_dssp TTTEEEECCCC-CCEEEEECCSCCCC
T ss_pred cCccceEcCCC-CcEEEEEeCCCCCc
Confidence 44556677666 78999999987544
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.73 E-value=5.2e-16 Score=145.67 Aligned_cols=200 Identities=16% Similarity=0.093 Sum_probs=132.3
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhccccCCcCCCchhhHHhhhccceE
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~----~al~~~~~~~l-~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~ 87 (328)
.|++|.++++||.++|||||||..+|++ .|+++++++++ ++++|.++|..++ | +-..|+|||+
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs---G------saa~si~GG~--- 158 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS---G------SSCRSFYAPW--- 158 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC---G------GGGGGGSCSE---
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---C------CcchhhhCCE---
Confidence 6899999999999999999999999999 99999999999 9999999997754 2 3456899994
Q ss_pred EEeecCCceEEEee-cCCCceEEEEe-cCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 020300 88 ELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (328)
Q Consensus 88 ~~id~~~~~~~~~~-~~~~~~~vl~~-s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (328)
.+.... ..+++. .++++.++++. +..+. ...+ + .+.+.
T Consensus 159 v~~~~g--~~~~l~~~~~~l~~~v~vi~~~~~-~vsT-------~-----~~~~~------------------------- 198 (323)
T 3lto_A 159 ALWTGD--KVSAIDLPYKDLLHQVIVISSQEK-EIPS-------R-----VAHKL------------------------- 198 (323)
T ss_dssp EEEETT--EEEECCCSCCSCEEEEEECCCCTT-CCCH-------H-----HHHHH-------------------------
T ss_pred EEEecC--cEEEccCCCCCCeEEEEEECCCCC-CCCC-------H-----HHHhh-------------------------
Confidence 222221 334442 22356654443 32210 0111 0 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 020300 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (328)
Q Consensus 166 ~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~~~~ 245 (328)
++..++ + + .+..+ -..++..++.
T Consensus 199 --------------------l~~~~~----------------~----~--------------~~~~~---~~~~~~~l~~ 221 (323)
T 3lto_A 199 --------------------VKTSPF----------------Y----E--------------TRSER---AEANLKLLLN 221 (323)
T ss_dssp --------------------GGGSTT----------------T----T--------------THHHH---HHHHHHHHHH
T ss_pred --------------------cccChh----------------H----H--------------HHHHH---hHHHHHHHHH
Confidence 000000 0 0 00000 1246778899
Q ss_pred HHhcCCCchHhHHHHHHHHHHH----HHHhhhh--c-CCCChhHHHHHHHHHh----CCCcEEEEeCcCCcceeEEEEeC
Q 020300 246 TVSSNLSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVKE 314 (328)
Q Consensus 246 al~~~~~~~~~~~~~g~lm~~s----h~~lr~~--~-~vs~p~ld~l~~~a~~----~Ga~GakisGaG~GG~v~~L~~~ 314 (328)
+|.++| ++.|+++|..+ |+.+++. | -..+|+..++++.+.+ .|++++.++|||. ++++|+++
T Consensus 222 AL~~gD-----~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGP--nv~~l~~~ 294 (323)
T 3lto_A 222 AFENKD-----WTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP--NVHLLYRS 294 (323)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS--CEEEEECG
T ss_pred HHHcCC-----HHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCC--CeEEEEec
Confidence 999875 99999987654 4444442 1 2357888888887765 5899999999985 67888888
Q ss_pred CcHHHHHHHHHhhC
Q 020300 315 SIDSQFILNLKVLF 328 (328)
Q Consensus 315 ~~~~~~~~~i~~~y 328 (328)
+..+++.+.+.+.|
T Consensus 295 ~~~~~v~~~l~~~~ 308 (323)
T 3lto_A 295 DQTDLARQFKSDHL 308 (323)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHh
Confidence 88899998887643
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.67 E-value=6.2e-15 Score=141.71 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=130.2
Q ss_pred CcceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEee
Q 020300 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (328)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id 91 (328)
..|+++.++++||.++|||||||.++|++.|++++++++ ++|+++|.+.+ .|...+++||+. ...
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~---------Gsva~s~~GG~v---~~~ 159 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS---------GSACRSAFGGFV---IWN 159 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC---------GGGGGGGSSSEE---EEE
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC---------cceeeehhCCeE---EEe
Confidence 468999999999999999999999999999999999976 88999998754 245678999952 333
Q ss_pred cC------CceEEEeecC---CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhh
Q 020300 92 FN------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (328)
Q Consensus 92 ~~------~~~~~~~~~~---~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v 162 (328)
.. .....+++.+ +++.++++.+..+.....+ + .+.+ +++
T Consensus 160 ~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~ss-------t-~~~r---~~~--------------------- 207 (380)
T 2hke_A 160 KGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSS-------T-KGMQ---QSL--------------------- 207 (380)
T ss_dssp CCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCH-------H-HHHH---HHH---------------------
T ss_pred cCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCC-------H-HHHH---HHH---------------------
Confidence 21 1234566543 3555444432211000000 0 0000 000
Q ss_pred hhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhHHHHHHH
Q 020300 163 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (328)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E~~r~~~ 242 (328)
+..+. .+ .+..++ -..++..
T Consensus 208 ------------------------~~~~~-~~---------------------------------~~~~~~--~~~~~~~ 227 (380)
T 2hke_A 208 ------------------------KTSPL-MK---------------------------------KRISET--VPERMKI 227 (380)
T ss_dssp ------------------------HHCTT-HH---------------------------------HHHHTH--HHHHHHH
T ss_pred ------------------------hcChh-HH---------------------------------HHHHHH--HHHHHHH
Confidence 00000 00 011110 1246667
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHHHHHHhhh----hc---CCCChhHHHHHHHHHhC----C-CcEEEEeCcCCcceeEE
Q 020300 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV----LY---ECSCPELEELVNVCRNN----G-ALGARLTGAGWGGCVVA 310 (328)
Q Consensus 243 ~~~al~~~~~~~~~~~~~g~lm~~sh~~lr~----~~---~vs~p~ld~l~~~a~~~----G-a~GakisGaG~GG~v~~ 310 (328)
++.||.++| ++.||++|.+++..+.. .+ ....|....+++.+.+. | +.++.++|+| .++++
T Consensus 228 l~~Al~~~D-----~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~ 300 (380)
T 2hke_A 228 ASRAIKARD-----FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFL 300 (380)
T ss_dssp HHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEE
T ss_pred HHHHHHcCC-----HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEEE
Confidence 889999775 99999999765444443 21 33678888888886653 8 8889999776 68999
Q ss_pred EEeCCcHHHHHHHHHhhC
Q 020300 311 LVKESIDSQFILNLKVLF 328 (328)
Q Consensus 311 L~~~~~~~~~~~~i~~~y 328 (328)
|++++.++++.+.+++.|
T Consensus 301 l~~~~~~~~v~~~l~~~~ 318 (380)
T 2hke_A 301 FVLKEDLPEAVAMLMEHF 318 (380)
T ss_dssp EEEGGGHHHHHHHHHHHS
T ss_pred EECHHHHHHHHHHHHHhc
Confidence 998777888888887654
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.61 E-value=2.5e-14 Score=137.47 Aligned_cols=201 Identities=13% Similarity=0.116 Sum_probs=132.4
Q ss_pred cceeEEEEecCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCcCCCchhhHHhhhccceEEEeec
Q 020300 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (328)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~g~~~G~~D~~~~~~gg~~~~~~id~ 92 (328)
.+++|.++++||.++|||||||..+|++.|+++++++ .++|.++|...+ | +-..++|||+ +++...
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---G------s~~~s~~GG~--v~w~~~ 187 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---G------SACRSLYGGF--VEWQMG 187 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---G------GGGGGGSSSE--EEECCC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---C------CcchHhhCCE--EEEEec
Confidence 5899999999999999999999999999999999997 467888887754 2 3456899995 222222
Q ss_pred C-----CceEEEeecC---CCceEEEEecCCcchhhhccccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 020300 93 N-----PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (328)
Q Consensus 93 ~-----~~~~~~~~~~---~~~~~vl~~s~~~~~~~~~~~~~~~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (328)
. .....+++.+ +++.++++.+.....+.. + | .. ++.
T Consensus 188 ~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vs---S----T-~~-------------------------mr~--- 231 (414)
T 3f0n_A 188 EQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTG---S----T-VG-------------------------MQT--- 231 (414)
T ss_dssp SCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCC---H----H-HH-------------------------HHH---
T ss_pred cCCCCCceEEEEcccccCCCCceEEEEEeCccccCCC---c----h-HH-------------------------HHh---
Confidence 1 1233455532 367777666432111010 1 0 00 000
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhhHHhH--HHHHHH
Q 020300 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE--AKRVHA 242 (328)
Q Consensus 165 ~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~E--~~r~~~ 242 (328)
.++.. . .+ .+.+.+ ..|+..
T Consensus 232 --------------------~l~ts----------------~-------------------~~---~~~v~~~~~~~~~~ 253 (414)
T 3f0n_A 232 --------------------SVETS----------------T-------------------LL---KFRAESVVPERMKE 253 (414)
T ss_dssp --------------------HHHHC----------------H-------------------HH---HHHHHHTHHHHHHH
T ss_pred --------------------hcccC----------------c-------------------cH---HHHHHHHHHHHHHH
Confidence 00000 0 00 011221 257778
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHH----HHHHhhhh--c-CCCChhHHHHHHHHHhC-----CCcEEEEeCcCCcceeEE
Q 020300 243 FKDTVSSNLSEEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVVA 310 (328)
Q Consensus 243 ~~~al~~~~~~~~~~~~~g~lm~~----sh~~lr~~--~-~vs~p~ld~l~~~a~~~-----Ga~GakisGaG~GG~v~~ 310 (328)
++.||.++| |+.||+++.. -|+.+++- + -..+|+...+++.+.+. |++++.++|||. .+++
T Consensus 254 l~~AL~~gD-----~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGP--nv~v 326 (414)
T 3f0n_A 254 MTRCIQEQD-----FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGP--NAVI 326 (414)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS--CEEE
T ss_pred HHHHHHcCC-----HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCC--CEEE
Confidence 899999875 9999998764 45555552 1 23588888888887773 899999999985 6788
Q ss_pred EEeCCcHHHHHHHHHhhC
Q 020300 311 LVKESIDSQFILNLKVLF 328 (328)
Q Consensus 311 L~~~~~~~~~~~~i~~~y 328 (328)
|++++..+++.+.+++.|
T Consensus 327 l~~~~~~~~v~~~l~~~f 344 (414)
T 3f0n_A 327 FTLEDTVAEFVAAVRHSF 344 (414)
T ss_dssp EEEHHHHHHHHHHHHHHS
T ss_pred EEecccHHHHHHHHHHhc
Confidence 888888999999887654
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=58.79 E-value=22 Score=27.45 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHhCCCcEEEEeCcCCcc-----eeEEEEeCCcHHHHHHHHHh
Q 020300 279 CPELEELVNVCRNNGALGARLTGAGWGG-----CVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 279 ~p~ld~l~~~a~~~Ga~GakisGaG~GG-----~v~~L~~~~~~~~~~~~i~~ 326 (328)
...+|.+.++..+.|..|-+++-.|++| .+...++++.++++++.|.+
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~ 67 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKK 67 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHH
Confidence 4567888888888999998887665533 34555677889999998876
No 29
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=32.60 E-value=56 Score=24.94 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHhCCCcEEEEe---CcCC-cce------------------eEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGARLT---GAGW-GGC------------------VVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gakis---GaG~-GG~------------------v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+.|..++ |-|- +|. +.++++++.++++++.|.+.
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~ 82 (119)
T 2j9c_A 11 RPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICEN 82 (119)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHH
Confidence 34568899999999888775433 3332 121 67788888999999998763
No 30
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=29.05 E-value=77 Score=23.91 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHhCCCcEEE---EeCcCC--cc-----------------eeEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gak---isGaG~--GG-----------------~v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+.|.. ..|-|- |. -+..+++++.++++++.|.+.
T Consensus 9 ~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~ 80 (116)
T 1vfj_A 9 RPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKA 80 (116)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHH
Confidence 345678889988888776643 334342 12 477888888999999998763
No 31
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=25.96 E-value=70 Score=24.01 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHhCCCcEEEE---eCcCC-cc------------------eeEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gaki---sGaG~-GG------------------~v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+-|..+ .|-|- +| -+..+++++.++++++.|.+.
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~ 80 (112)
T 2eg2_A 9 KPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKT 80 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHH
Confidence 3456788888888887766433 33332 11 366777788899999988763
No 32
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=25.77 E-value=71 Score=24.54 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHhCCCcEEEE---eCcCCc-c----------eeEEEEeCCcHHHHHHHHHh
Q 020300 278 SCPELEELVNVCRNNGALGARL---TGAGWG-G----------CVVALVKESIDSQFILNLKV 326 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gaki---sGaG~G-G----------~v~~L~~~~~~~~~~~~i~~ 326 (328)
..+.++.+.+++.+.|+-|.-+ .|-|.. | -+.++++++.++++++.|.+
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~ 95 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQE 95 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHH
Confidence 3567889999999888766443 333331 1 35566667789999998874
No 33
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=24.62 E-value=79 Score=24.13 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHhCCCcEEEE----eCcCCcc---------------eeEEEEe-CCcHHHHHHHHHh
Q 020300 279 CPELEELVNVCRNNGALGARL----TGAGWGG---------------CVVALVK-ESIDSQFILNLKV 326 (328)
Q Consensus 279 ~p~ld~l~~~a~~~Ga~Gaki----sGaG~GG---------------~v~~L~~-~~~~~~~~~~i~~ 326 (328)
-|-.++|++.+++.|+-|+-+ .|-|..| -++.++. +++.+.+...+.+
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~ 96 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDN 96 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHT
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 466799999999998888766 3333333 1333443 3667777777765
No 34
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=22.47 E-value=1.1e+02 Score=22.96 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=33.9
Q ss_pred CChhHHHHHHHHHhCCCcEEEE---eCcCC-cc------------------eeEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gaki---sGaG~-GG------------------~v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+.|..+ .|-|- .| -+..+++++.++++++.|.+.
T Consensus 11 r~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~ 82 (114)
T 3bzq_A 11 KPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRA 82 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHH
Confidence 3456788888888887766433 33332 12 367777888999999998763
No 35
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.00 E-value=63 Score=18.82 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=6.0
Q ss_pred cHHHHHHHHHh
Q 020300 316 IDSQFILNLKV 326 (328)
Q Consensus 316 ~~~~~~~~i~~ 326 (328)
.++.+.++|.+
T Consensus 22 aaeayakriae 32 (37)
T 2i9o_A 22 AAEAYAKRIAE 32 (37)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666655543
No 36
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=20.12 E-value=1.1e+02 Score=24.02 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHhCCCcEEEE---eCcCCc-c-------------------eeEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGARL---TGAGWG-G-------------------CVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gaki---sGaG~G-G-------------------~v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+.|..+ .|-|-. | -+.++|+++.++++++.|.+.
T Consensus 21 r~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~ 93 (135)
T 2o66_A 21 RPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEG 93 (135)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHH
Confidence 3456788888888887766433 444431 2 366777888999999988763
No 37
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=20.02 E-value=1.5e+02 Score=22.04 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=32.8
Q ss_pred CChhHHHHHHHHHhCCCcEEEE---eCcCC-cc------------------eeEEEEeCCcHHHHHHHHHhh
Q 020300 278 SCPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKVL 327 (328)
Q Consensus 278 s~p~ld~l~~~a~~~Ga~Gaki---sGaG~-GG------------------~v~~L~~~~~~~~~~~~i~~~ 327 (328)
....++.+.++..+.|+-|..+ .|-|- +| -+..+++++.++++++.+.+.
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~ 80 (112)
T 1hwu_A 9 KPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKA 80 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHH
Confidence 3456788888888888766544 34443 12 344556778899999988763
Done!