Query 020301
Match_columns 328
No_of_seqs 258 out of 2083
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 6E-77 1.3E-81 574.3 35.7 326 1-326 1-326 (386)
2 COG0111 SerA Phosphoglycerate 100.0 4.7E-72 1E-76 528.9 28.8 286 14-326 2-288 (324)
3 PRK15409 bifunctional glyoxyla 100.0 1.6E-70 3.5E-75 519.9 32.8 289 14-326 1-291 (323)
4 COG1052 LdhA Lactate dehydroge 100.0 1.1E-70 2.4E-75 519.1 30.8 289 14-326 1-294 (324)
5 PRK08410 2-hydroxyacid dehydro 100.0 5.9E-69 1.3E-73 507.4 30.6 279 17-326 2-289 (311)
6 KOG0068 D-3-phosphoglycerate d 100.0 4.4E-69 9.5E-74 493.3 24.3 283 17-326 8-293 (406)
7 PRK06487 glycerate dehydrogena 100.0 4.7E-68 1E-72 502.5 31.7 267 30-326 18-290 (317)
8 PRK11790 D-3-phosphoglycerate 100.0 4.8E-68 1E-72 517.7 31.9 289 9-326 4-298 (409)
9 PRK13243 glyoxylate reductase; 100.0 1.1E-67 2.4E-72 503.1 32.5 290 14-326 1-294 (333)
10 PRK06932 glycerate dehydrogena 100.0 2E-67 4.4E-72 497.4 29.8 252 50-326 33-292 (314)
11 PLN03139 formate dehydrogenase 100.0 6.1E-65 1.3E-69 489.5 30.3 277 29-326 67-346 (386)
12 PRK07574 formate dehydrogenase 100.0 9.4E-65 2E-69 488.5 30.1 276 30-326 61-339 (385)
13 PLN02928 oxidoreductase family 100.0 1.8E-64 4E-69 483.1 31.8 297 9-326 12-317 (347)
14 TIGR01327 PGDH D-3-phosphoglyc 100.0 3.2E-64 7E-69 505.3 31.4 283 17-326 1-283 (525)
15 PRK13581 D-3-phosphoglycerate 100.0 2.5E-63 5.3E-68 499.0 31.3 283 16-326 1-284 (526)
16 PRK12480 D-lactate dehydrogena 100.0 1.2E-62 2.7E-67 467.5 29.4 285 16-326 2-302 (330)
17 PRK08605 D-lactate dehydrogena 100.0 6.2E-62 1.3E-66 463.7 30.1 289 14-326 2-304 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.3E-61 2.9E-66 453.1 21.5 275 33-326 32-307 (336)
19 PRK15438 erythronate-4-phospha 100.0 1.6E-59 3.4E-64 450.4 27.5 256 16-326 1-260 (378)
20 PRK15469 ghrA bifunctional gly 100.0 2.2E-58 4.7E-63 435.1 28.0 272 17-326 2-281 (312)
21 PRK00257 erythronate-4-phospha 100.0 2.2E-58 4.8E-63 443.8 26.9 256 16-326 1-260 (381)
22 PRK06436 glycerate dehydrogena 100.0 1.3E-56 2.8E-61 421.0 28.0 227 62-325 34-261 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 7.9E-52 1.7E-56 361.6 16.9 177 128-322 1-178 (178)
24 KOG0067 Transcription factor C 100.0 4.3E-34 9.3E-39 265.4 11.1 251 51-326 62-318 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 1.1E-22 2.3E-27 199.3 17.0 170 93-306 198-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.9 1.5E-20 3.3E-25 175.8 16.7 203 29-279 16-248 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 4.7E-17 1E-21 135.3 11.9 101 18-127 1-101 (133)
28 PRK08306 dipicolinate synthase 99.7 3.9E-16 8.4E-21 146.8 19.0 195 29-273 17-242 (296)
29 PLN02494 adenosylhomocysteinas 99.7 2.5E-17 5.5E-22 161.2 10.5 122 161-303 250-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.7 2.1E-15 4.5E-20 146.5 17.4 121 161-301 191-312 (406)
31 PRK13403 ketol-acid reductoiso 99.6 1.2E-14 2.5E-19 136.3 9.3 97 161-275 12-108 (335)
32 PRK05476 S-adenosyl-L-homocyst 99.5 6E-13 1.3E-17 130.2 19.3 155 93-284 156-312 (425)
33 PF00670 AdoHcyase_NAD: S-aden 99.4 1.2E-12 2.6E-17 111.5 10.5 104 161-284 19-123 (162)
34 PF03446 NAD_binding_2: NAD bi 99.3 7.9E-12 1.7E-16 107.5 8.3 115 166-297 2-117 (163)
35 COG2084 MmsB 3-hydroxyisobutyr 99.2 4E-11 8.6E-16 111.5 10.8 113 166-292 1-115 (286)
36 TIGR01505 tartro_sem_red 2-hyd 99.2 3E-11 6.6E-16 113.2 10.0 111 167-292 1-113 (291)
37 PRK11559 garR tartronate semia 99.2 4.1E-11 9E-16 112.5 9.9 123 166-303 3-127 (296)
38 cd00401 AdoHcyase S-adenosyl-L 99.2 3.3E-10 7.1E-15 110.7 15.9 105 160-284 197-302 (413)
39 PRK15461 NADH-dependent gamma- 99.2 1.5E-10 3.2E-15 109.1 10.3 112 166-292 2-115 (296)
40 PRK12490 6-phosphogluconate de 99.2 2E-10 4.4E-15 108.2 10.8 113 167-297 2-117 (299)
41 PRK05479 ketol-acid reductoiso 99.1 2.1E-10 4.4E-15 109.0 8.8 119 161-304 13-131 (330)
42 PLN02712 arogenate dehydrogena 99.1 8.5E-10 1.8E-14 114.3 11.9 114 159-289 363-477 (667)
43 PRK09599 6-phosphogluconate de 99.0 1.6E-09 3.5E-14 102.2 10.9 113 167-297 2-117 (301)
44 COG0499 SAM1 S-adenosylhomocys 99.0 1.9E-09 4.1E-14 101.4 9.2 104 162-285 206-310 (420)
45 PLN02350 phosphogluconate dehy 98.9 4.6E-09 1E-13 105.0 11.2 128 167-303 8-138 (493)
46 PRK14189 bifunctional 5,10-met 98.9 4.1E-08 8.9E-13 91.4 15.5 170 31-275 55-233 (285)
47 PLN02256 arogenate dehydrogena 98.9 5.5E-09 1.2E-13 98.7 9.7 109 163-288 34-143 (304)
48 PRK15059 tartronate semialdehy 98.9 6.6E-09 1.4E-13 97.7 9.2 113 167-297 2-116 (292)
49 TIGR00465 ilvC ketol-acid redu 98.9 1E-08 2.2E-13 97.2 9.6 97 163-276 1-97 (314)
50 PRK14194 bifunctional 5,10-met 98.9 7E-08 1.5E-12 90.4 15.0 168 32-274 57-233 (301)
51 PTZ00142 6-phosphogluconate de 98.9 1.4E-08 3.1E-13 101.2 11.0 128 166-303 2-132 (470)
52 TIGR00872 gnd_rel 6-phosphoglu 98.8 2.1E-08 4.5E-13 94.5 11.0 109 167-292 2-113 (298)
53 PLN02858 fructose-bisphosphate 98.8 1.4E-08 3E-13 112.5 10.7 109 165-288 324-434 (1378)
54 PLN02858 fructose-bisphosphate 98.8 1.7E-08 3.7E-13 111.9 11.1 120 164-298 3-124 (1378)
55 TIGR00518 alaDH alanine dehydr 98.8 2.5E-08 5.4E-13 96.8 9.5 103 162-272 164-267 (370)
56 TIGR01692 HIBADH 3-hydroxyisob 98.8 1.9E-08 4.2E-13 94.2 8.2 111 170-297 1-113 (288)
57 PRK14619 NAD(P)H-dependent gly 98.8 2.3E-08 5.1E-13 94.6 8.9 83 164-276 3-86 (308)
58 PRK07066 3-hydroxybutyryl-CoA 98.8 7.8E-08 1.7E-12 91.4 12.3 130 166-299 8-143 (321)
59 KOG1370 S-adenosylhomocysteine 98.8 2.4E-08 5.2E-13 92.1 8.4 95 162-276 211-305 (434)
60 PLN02545 3-hydroxybutyryl-CoA 98.8 1.1E-07 2.4E-12 89.4 13.1 118 166-288 5-133 (295)
61 PF07991 IlvN: Acetohydroxy ac 98.8 2.5E-08 5.5E-13 84.8 7.7 94 163-274 2-96 (165)
62 PRK08655 prephenate dehydrogen 98.8 6.1E-08 1.3E-12 96.1 11.7 133 167-321 2-137 (437)
63 PRK08818 prephenate dehydrogen 98.8 1.5E-07 3.2E-12 91.1 13.9 122 164-320 3-130 (370)
64 TIGR00873 gnd 6-phosphoglucona 98.7 5.6E-08 1.2E-12 96.9 11.1 124 168-302 2-128 (467)
65 PRK05225 ketol-acid reductoiso 98.7 1.3E-08 2.8E-13 99.4 6.2 97 161-276 32-134 (487)
66 TIGR00561 pntA NAD(P) transhyd 98.7 1.6E-06 3.4E-11 87.0 21.2 225 30-272 22-284 (511)
67 PRK14188 bifunctional 5,10-met 98.7 3.4E-07 7.3E-12 85.9 15.3 168 32-275 56-233 (296)
68 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 3E-07 6.5E-12 81.8 14.1 110 161-292 24-134 (200)
69 PLN02712 arogenate dehydrogena 98.7 4.2E-08 9E-13 101.8 9.7 109 162-287 49-158 (667)
70 PRK14179 bifunctional 5,10-met 98.7 5.1E-07 1.1E-11 84.1 15.4 169 31-274 55-232 (284)
71 PRK14175 bifunctional 5,10-met 98.7 6.5E-07 1.4E-11 83.5 16.0 168 32-274 56-232 (286)
72 PRK09260 3-hydroxybutyryl-CoA 98.7 1.8E-07 4E-12 87.6 12.4 128 166-299 2-141 (288)
73 PF03807 F420_oxidored: NADP o 98.7 9E-08 2E-12 74.5 8.0 92 167-274 1-96 (96)
74 KOG0409 Predicted dehydrogenas 98.7 5.8E-08 1.3E-12 89.7 7.7 118 163-297 33-153 (327)
75 PRK07502 cyclohexadienyl dehyd 98.7 1.3E-07 2.9E-12 89.3 10.3 141 165-323 6-155 (307)
76 PRK07417 arogenate dehydrogena 98.6 1.7E-07 3.7E-12 87.5 10.5 135 167-323 2-143 (279)
77 COG0287 TyrA Prephenate dehydr 98.6 1.7E-07 3.6E-12 87.4 9.6 136 165-321 3-145 (279)
78 PRK06545 prephenate dehydrogen 98.6 1.4E-07 3E-12 91.3 9.4 138 166-322 1-149 (359)
79 PRK13302 putative L-aspartate 98.6 2.6E-07 5.6E-12 86.0 10.2 112 164-292 5-118 (271)
80 PRK11199 tyrA bifunctional cho 98.6 6.2E-07 1.3E-11 87.2 12.9 81 164-275 97-178 (374)
81 PRK07679 pyrroline-5-carboxyla 98.6 5E-07 1.1E-11 84.3 11.6 107 165-288 3-113 (279)
82 PRK15182 Vi polysaccharide bio 98.6 4.5E-07 9.7E-12 89.6 11.2 140 166-317 7-173 (425)
83 PRK08293 3-hydroxybutyryl-CoA 98.5 1.8E-06 3.8E-11 80.9 14.2 147 166-323 4-161 (287)
84 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 4.7E-07 1E-11 78.3 8.9 82 161-278 40-122 (168)
85 PRK10792 bifunctional 5,10-met 98.5 5.7E-06 1.2E-10 77.1 16.5 76 161-272 155-231 (285)
86 PRK14176 bifunctional 5,10-met 98.5 1E-05 2.2E-10 75.4 18.1 167 32-273 62-237 (287)
87 PRK14178 bifunctional 5,10-met 98.5 3.7E-06 8E-11 78.1 14.9 167 32-273 50-225 (279)
88 PLN02688 pyrroline-5-carboxyla 98.5 6.9E-07 1.5E-11 82.5 9.9 103 167-288 2-109 (266)
89 cd01065 NAD_bind_Shikimate_DH 98.5 2E-06 4.4E-11 72.5 11.3 114 162-290 16-132 (155)
90 PRK07530 3-hydroxybutyryl-CoA 98.5 2.1E-06 4.5E-11 80.6 12.4 128 166-300 5-144 (292)
91 PRK12491 pyrroline-5-carboxyla 98.5 1.2E-06 2.5E-11 81.7 10.6 105 166-288 3-111 (272)
92 PRK14191 bifunctional 5,10-met 98.4 6.9E-06 1.5E-10 76.5 15.0 168 32-274 55-231 (285)
93 PF01488 Shikimate_DH: Shikima 98.4 1E-06 2.2E-11 73.4 8.1 104 162-277 9-114 (135)
94 PRK07819 3-hydroxybutyryl-CoA 98.4 2.6E-06 5.5E-11 79.9 11.4 131 166-301 6-147 (286)
95 PRK11064 wecC UDP-N-acetyl-D-m 98.4 2.1E-06 4.5E-11 84.7 11.0 109 166-288 4-135 (415)
96 PRK14618 NAD(P)H-dependent gly 98.4 3.6E-06 7.8E-11 80.3 12.4 114 166-288 5-123 (328)
97 PRK09424 pntA NAD(P) transhydr 98.4 3E-05 6.5E-10 78.0 19.2 227 30-273 23-286 (509)
98 PRK05808 3-hydroxybutyryl-CoA 98.4 7E-06 1.5E-10 76.6 13.7 119 166-288 4-132 (282)
99 PRK06928 pyrroline-5-carboxyla 98.4 3.8E-06 8.3E-11 78.4 11.2 110 166-291 2-115 (277)
100 PRK05472 redox-sensing transcr 98.3 5.2E-07 1.1E-11 81.0 5.0 132 123-288 63-201 (213)
101 PRK00094 gpsA NAD(P)H-dependen 98.3 2.7E-06 5.8E-11 80.6 9.4 107 166-277 2-110 (325)
102 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 7.9E-06 1.7E-10 82.4 12.8 132 166-304 6-149 (503)
103 PRK08268 3-hydroxy-acyl-CoA de 98.3 7.6E-06 1.6E-10 82.7 12.7 131 166-303 8-150 (507)
104 PRK06035 3-hydroxyacyl-CoA deh 98.3 1.3E-05 2.9E-10 75.2 13.2 132 166-302 4-148 (291)
105 COG0686 Ald Alanine dehydrogen 98.3 1.6E-06 3.5E-11 80.6 6.7 102 162-272 165-268 (371)
106 PRK08507 prephenate dehydrogen 98.3 3.4E-06 7.4E-11 78.5 8.9 132 167-321 2-142 (275)
107 PRK14806 bifunctional cyclohex 98.3 3E-06 6.5E-11 89.3 9.3 138 166-323 4-153 (735)
108 TIGR01724 hmd_rel H2-forming N 98.3 4.8E-06 1E-10 78.3 9.4 98 177-288 32-129 (341)
109 PRK07531 bifunctional 3-hydrox 98.2 4.7E-06 1E-10 84.0 10.0 119 166-288 5-130 (495)
110 PRK14170 bifunctional 5,10-met 98.2 7.2E-05 1.6E-09 69.7 16.7 169 32-275 55-232 (284)
111 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 6.2E-06 1.3E-10 70.4 8.8 104 167-275 1-106 (157)
112 PRK14190 bifunctional 5,10-met 98.2 0.00011 2.4E-09 68.5 17.8 170 31-275 55-233 (284)
113 PRK06130 3-hydroxybutyryl-CoA 98.2 1.2E-05 2.7E-10 75.9 11.6 118 166-288 5-129 (311)
114 PRK07680 late competence prote 98.2 1.1E-05 2.3E-10 75.1 10.8 104 167-287 2-109 (273)
115 PRK14183 bifunctional 5,10-met 98.2 5.3E-05 1.2E-09 70.5 15.2 166 32-272 55-229 (281)
116 PRK14169 bifunctional 5,10-met 98.2 6.5E-05 1.4E-09 70.0 15.6 168 32-274 54-230 (282)
117 PRK14173 bifunctional 5,10-met 98.2 6E-05 1.3E-09 70.4 15.4 186 15-275 31-230 (287)
118 TIGR03026 NDP-sugDHase nucleot 98.2 1E-05 2.3E-10 79.6 10.7 119 167-288 2-137 (411)
119 PRK15057 UDP-glucose 6-dehydro 98.2 1.5E-05 3.2E-10 77.9 11.6 140 167-317 2-160 (388)
120 PRK06476 pyrroline-5-carboxyla 98.2 1.1E-05 2.3E-10 74.4 9.7 104 167-289 2-108 (258)
121 PF01262 AlaDh_PNT_C: Alanine 98.2 6.6E-06 1.4E-10 71.0 7.7 110 161-272 16-139 (168)
122 PRK14171 bifunctional 5,10-met 98.2 0.00025 5.5E-09 66.2 18.7 166 32-272 56-231 (288)
123 cd05311 NAD_bind_2_malic_enz N 98.2 2.8E-05 6E-10 70.5 12.0 138 161-322 21-168 (226)
124 PRK06129 3-hydroxyacyl-CoA deh 98.2 1.4E-05 3E-10 75.7 10.5 120 166-288 3-132 (308)
125 PRK14172 bifunctional 5,10-met 98.2 9.1E-05 2E-09 68.9 15.5 184 15-273 34-231 (278)
126 TIGR01546 GAPDH-II_archae glyc 98.2 1E-05 2.2E-10 77.2 9.4 102 168-272 1-108 (333)
127 PRK07634 pyrroline-5-carboxyla 98.1 2.3E-05 5E-10 71.3 11.2 109 164-289 3-114 (245)
128 PRK14186 bifunctional 5,10-met 98.1 9.9E-05 2.1E-09 69.3 15.5 169 32-275 56-233 (297)
129 PRK14174 bifunctional 5,10-met 98.1 8.8E-05 1.9E-09 69.6 14.8 79 161-274 155-237 (295)
130 PF02737 3HCDH_N: 3-hydroxyacy 98.1 1.6E-05 3.4E-10 69.6 9.3 129 167-300 1-139 (180)
131 PRK14184 bifunctional 5,10-met 98.1 9.5E-05 2.1E-09 69.0 14.8 166 32-272 55-233 (286)
132 PRK14166 bifunctional 5,10-met 98.1 0.00011 2.4E-09 68.4 15.2 167 32-272 54-229 (282)
133 PRK13304 L-aspartate dehydroge 98.1 2E-05 4.4E-10 73.1 9.8 107 166-290 2-113 (265)
134 PRK14177 bifunctional 5,10-met 98.1 0.00013 2.9E-09 67.9 15.1 168 31-273 56-232 (284)
135 PLN02516 methylenetetrahydrofo 98.1 0.00015 3.2E-09 68.1 15.4 78 160-273 162-240 (299)
136 PRK14182 bifunctional 5,10-met 98.1 0.00049 1.1E-08 64.1 18.5 169 32-274 54-231 (282)
137 PRK14180 bifunctional 5,10-met 98.1 0.00017 3.8E-09 67.2 15.3 78 160-273 153-231 (282)
138 PRK14187 bifunctional 5,10-met 98.0 0.00016 3.5E-09 67.7 15.0 78 160-273 155-233 (294)
139 PLN02897 tetrahydrofolate dehy 98.0 0.00012 2.7E-09 69.7 14.4 170 32-274 110-288 (345)
140 PLN02616 tetrahydrofolate dehy 98.0 0.00021 4.4E-09 68.5 15.7 77 161-273 227-304 (364)
141 TIGR01035 hemA glutamyl-tRNA r 98.0 1.7E-05 3.7E-10 78.3 8.8 102 162-278 177-283 (417)
142 PF10727 Rossmann-like: Rossma 98.0 7.9E-06 1.7E-10 67.4 5.3 109 164-290 9-120 (127)
143 PRK14185 bifunctional 5,10-met 98.0 0.00021 4.4E-09 67.0 15.2 168 32-273 55-234 (293)
144 PRK14193 bifunctional 5,10-met 98.0 0.00021 4.6E-09 66.6 15.3 169 32-275 56-235 (284)
145 PRK14167 bifunctional 5,10-met 98.0 0.00024 5.1E-09 66.7 15.5 169 31-273 54-234 (297)
146 PRK14181 bifunctional 5,10-met 98.0 0.00094 2E-08 62.4 19.3 187 15-275 28-232 (287)
147 PF02882 THF_DHG_CYH_C: Tetrah 98.0 2.8E-05 6.1E-10 66.6 8.2 81 160-276 31-112 (160)
148 PLN00203 glutamyl-tRNA reducta 98.0 3.5E-05 7.5E-10 77.9 9.9 102 162-275 263-372 (519)
149 PRK14192 bifunctional 5,10-met 98.0 3.6E-05 7.8E-10 72.0 9.3 79 160-274 154-233 (283)
150 PRK11880 pyrroline-5-carboxyla 98.0 6.5E-05 1.4E-09 69.4 10.9 102 166-287 3-107 (267)
151 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 0.0001 2.2E-09 61.8 10.7 80 160-275 23-103 (140)
152 PRK09287 6-phosphogluconate de 97.9 4.3E-05 9.3E-10 76.2 9.6 117 176-303 1-120 (459)
153 cd05213 NAD_bind_Glutamyl_tRNA 97.9 5.8E-05 1.3E-09 71.6 9.7 99 163-275 176-276 (311)
154 PRK14168 bifunctional 5,10-met 97.9 0.00038 8.2E-09 65.4 14.8 169 32-273 57-238 (297)
155 COG0345 ProC Pyrroline-5-carbo 97.9 0.0001 2.2E-09 68.2 10.9 107 166-294 2-115 (266)
156 cd05191 NAD_bind_amino_acid_DH 97.9 9.6E-05 2.1E-09 56.5 9.0 67 161-272 19-86 (86)
157 TIGR02371 ala_DH_arch alanine 97.9 5.5E-05 1.2E-09 72.3 9.2 95 165-273 128-223 (325)
158 PRK00045 hemA glutamyl-tRNA re 97.9 4.9E-05 1.1E-09 75.2 9.0 99 162-275 179-283 (423)
159 PRK08229 2-dehydropantoate 2-r 97.9 8.4E-05 1.8E-09 71.0 10.1 120 166-293 3-127 (341)
160 COG2085 Predicted dinucleotide 97.9 9E-05 1.9E-09 65.8 9.2 94 166-274 2-95 (211)
161 PRK06141 ornithine cyclodeamin 97.9 9.6E-05 2.1E-09 70.3 10.1 93 164-271 124-217 (314)
162 COG0059 IlvC Ketol-acid reduct 97.8 5.6E-05 1.2E-09 70.3 7.5 96 162-274 15-110 (338)
163 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 9.9E-05 2.1E-09 64.9 8.5 148 166-317 1-171 (185)
164 PRK12921 2-dehydropantoate 2-r 97.8 0.00012 2.7E-09 68.6 9.7 119 167-292 2-121 (305)
165 PTZ00431 pyrroline carboxylate 97.8 8.9E-05 1.9E-09 68.5 8.4 97 165-287 3-103 (260)
166 PF02423 OCD_Mu_crystall: Orni 97.8 0.00013 2.9E-09 69.3 9.6 99 166-276 129-228 (313)
167 PRK07340 ornithine cyclodeamin 97.8 0.00016 3.4E-09 68.5 10.1 95 163-273 123-218 (304)
168 TIGR01915 npdG NADPH-dependent 97.8 0.00017 3.8E-09 64.8 9.9 102 167-275 2-104 (219)
169 COG1023 Gnd Predicted 6-phosph 97.8 0.00015 3.1E-09 65.5 8.9 116 166-299 1-119 (300)
170 KOG2380 Prephenate dehydrogena 97.8 0.0002 4.3E-09 67.6 10.0 134 166-322 53-192 (480)
171 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00024 5.2E-09 62.5 9.5 110 161-279 24-136 (194)
172 PRK14982 acyl-ACP reductase; P 97.7 0.00023 4.9E-09 68.3 9.2 101 160-279 150-253 (340)
173 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00039 8.4E-09 61.2 9.8 95 159-273 56-157 (197)
174 PRK08618 ornithine cyclodeamin 97.6 0.00038 8.2E-09 66.5 10.4 96 164-273 126-222 (325)
175 PRK06522 2-dehydropantoate 2-r 97.6 0.00057 1.2E-08 64.0 11.4 119 167-293 2-120 (304)
176 PRK00258 aroE shikimate 5-dehy 97.6 0.00027 5.8E-09 66.0 9.1 118 162-290 120-238 (278)
177 PLN02353 probable UDP-glucose 97.6 0.0011 2.4E-08 66.5 13.6 148 166-317 2-176 (473)
178 TIGR03376 glycerol3P_DH glycer 97.6 0.00036 7.9E-09 67.1 9.8 107 167-278 1-122 (342)
179 PRK06046 alanine dehydrogenase 97.6 0.00051 1.1E-08 65.6 10.2 94 165-272 129-223 (326)
180 COG2423 Predicted ornithine cy 97.6 0.00078 1.7E-08 64.3 11.2 96 165-273 130-226 (330)
181 TIGR02992 ectoine_eutC ectoine 97.6 0.0007 1.5E-08 64.7 11.0 96 164-272 128-224 (326)
182 PRK06823 ornithine cyclodeamin 97.5 0.00044 9.5E-09 65.8 9.1 94 165-272 128-222 (315)
183 PRK12557 H(2)-dependent methyl 97.5 0.0004 8.6E-09 66.8 8.8 100 177-287 32-132 (342)
184 PTZ00345 glycerol-3-phosphate 97.5 0.00061 1.3E-08 66.1 9.5 111 166-278 12-135 (365)
185 TIGR02354 thiF_fam2 thiamine b 97.4 0.00072 1.6E-08 60.1 8.7 110 161-272 17-145 (200)
186 PRK06407 ornithine cyclodeamin 97.4 0.00087 1.9E-08 63.4 9.7 95 165-272 117-212 (301)
187 PRK06199 ornithine cyclodeamin 97.4 0.00092 2E-08 65.2 10.1 99 165-273 155-260 (379)
188 PRK07589 ornithine cyclodeamin 97.4 0.00077 1.7E-08 64.9 9.4 96 165-272 129-225 (346)
189 PF13241 NAD_binding_7: Putati 97.4 0.00016 3.4E-09 57.3 3.7 88 162-272 4-91 (103)
190 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0018 3.8E-08 58.8 11.0 117 161-292 27-154 (227)
191 PRK06718 precorrin-2 dehydroge 97.4 0.0005 1.1E-08 61.3 7.3 75 161-246 6-80 (202)
192 PRK08291 ectoine utilization p 97.4 0.0011 2.3E-08 63.5 10.0 95 164-271 131-226 (330)
193 TIGR01470 cysG_Nterm siroheme 97.4 0.0006 1.3E-08 60.9 7.6 94 161-271 5-99 (205)
194 COG1712 Predicted dinucleotide 97.4 0.00064 1.4E-08 60.9 7.6 97 167-281 2-100 (255)
195 COG0190 FolD 5,10-methylene-te 97.4 0.00058 1.3E-08 63.3 7.5 79 160-274 151-230 (283)
196 COG0240 GpsA Glycerol-3-phosph 97.4 0.001 2.2E-08 63.1 9.2 110 166-279 2-112 (329)
197 PRK12439 NAD(P)H-dependent gly 97.4 0.00082 1.8E-08 64.6 8.8 104 166-275 8-114 (341)
198 PF01118 Semialdhyde_dh: Semia 97.3 0.00064 1.4E-08 55.3 6.6 96 167-273 1-98 (121)
199 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0029 6.3E-08 57.0 11.1 115 161-291 19-144 (217)
200 TIGR00507 aroE shikimate 5-deh 97.3 0.0015 3.3E-08 60.6 9.1 111 163-289 115-229 (270)
201 COG0373 HemA Glutamyl-tRNA red 97.2 0.0014 3E-08 64.2 9.1 99 162-275 175-277 (414)
202 PRK14620 NAD(P)H-dependent gly 97.2 0.0017 3.7E-08 61.8 9.5 104 167-275 2-109 (326)
203 PRK13940 glutamyl-tRNA reducta 97.2 0.0017 3.6E-08 64.1 9.6 96 162-273 178-274 (414)
204 PTZ00117 malate dehydrogenase; 97.2 0.0021 4.6E-08 61.2 10.0 131 163-297 3-151 (319)
205 PRK09414 glutamate dehydrogena 97.2 0.0014 3E-08 65.0 8.9 120 161-292 228-362 (445)
206 TIGR01763 MalateDH_bact malate 97.2 0.0017 3.8E-08 61.4 9.1 127 166-297 2-147 (305)
207 TIGR01921 DAP-DH diaminopimela 97.2 0.0012 2.5E-08 62.9 7.9 87 166-272 4-91 (324)
208 PRK13301 putative L-aspartate 97.2 0.0023 4.9E-08 59.1 9.5 103 166-288 3-112 (267)
209 PF02153 PDH: Prephenate dehyd 97.2 0.0012 2.6E-08 61.0 7.7 127 180-322 1-133 (258)
210 PRK06249 2-dehydropantoate 2-r 97.2 0.0016 3.5E-08 61.7 8.6 121 166-295 6-128 (313)
211 PRK00676 hemA glutamyl-tRNA re 97.2 0.0017 3.6E-08 62.2 8.4 96 162-278 171-267 (338)
212 PRK12549 shikimate 5-dehydroge 97.1 0.0028 6.1E-08 59.4 9.7 117 162-289 124-243 (284)
213 PRK12548 shikimate 5-dehydroge 97.1 0.002 4.4E-08 60.5 8.7 124 162-289 123-252 (289)
214 PRK11154 fadJ multifunctional 97.1 0.0063 1.4E-07 64.2 13.1 130 166-300 310-450 (708)
215 TIGR02440 FadJ fatty oxidation 97.1 0.0074 1.6E-07 63.5 13.6 131 166-301 305-446 (699)
216 cd00650 LDH_MDH_like NAD-depen 97.1 0.0013 2.7E-08 60.9 6.7 128 168-299 1-149 (263)
217 COG0362 Gnd 6-phosphogluconate 97.1 0.0067 1.5E-07 58.6 11.5 127 166-303 4-133 (473)
218 TIGR02441 fa_ox_alpha_mit fatt 97.1 0.0058 1.3E-07 64.6 12.3 130 166-301 336-476 (737)
219 PF01408 GFO_IDH_MocA: Oxidore 97.0 0.0042 9.1E-08 49.8 8.2 107 167-290 2-113 (120)
220 PRK11730 fadB multifunctional 97.0 0.0039 8.4E-08 65.8 10.0 130 166-301 314-454 (715)
221 PLN02477 glutamate dehydrogena 97.0 0.006 1.3E-07 60.0 10.5 116 161-292 202-329 (410)
222 PRK01713 ornithine carbamoyltr 96.9 0.11 2.4E-06 49.8 18.8 106 162-271 153-274 (334)
223 TIGR00658 orni_carb_tr ornithi 96.9 0.13 2.8E-06 48.8 18.9 105 163-271 146-263 (304)
224 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.0048 1.1E-07 56.8 8.8 119 161-292 34-172 (254)
225 COG0677 WecC UDP-N-acetyl-D-ma 96.9 0.0048 1E-07 59.7 8.9 143 166-316 10-180 (436)
226 COG0026 PurK Phosphoribosylami 96.9 0.0014 3E-08 62.8 5.2 67 165-241 1-67 (375)
227 PRK02102 ornithine carbamoyltr 96.9 0.13 2.9E-06 49.2 18.7 106 162-271 152-272 (331)
228 TIGR02356 adenyl_thiF thiazole 96.9 0.0032 7E-08 56.0 7.2 102 161-264 17-138 (202)
229 PRK09310 aroDE bifunctional 3- 96.9 0.0039 8.5E-08 62.7 8.6 104 160-288 327-430 (477)
230 TIGR02964 xanthine_xdhC xanthi 96.8 0.0057 1.2E-07 56.2 8.7 88 166-291 101-188 (246)
231 TIGR02437 FadB fatty oxidation 96.8 0.0063 1.4E-07 64.2 10.2 130 166-300 314-453 (714)
232 PF00185 OTCace: Aspartate/orn 96.8 0.01 2.2E-07 50.8 9.7 113 164-280 1-131 (158)
233 PRK06719 precorrin-2 dehydroge 96.8 0.0035 7.5E-08 53.6 6.8 41 160-201 8-48 (157)
234 COG1064 AdhP Zn-dependent alco 96.8 0.0056 1.2E-07 58.6 8.3 72 164-245 166-238 (339)
235 PF01113 DapB_N: Dihydrodipico 96.8 0.0063 1.4E-07 49.8 7.6 110 167-287 2-113 (124)
236 PRK13303 L-aspartate dehydroge 96.7 0.0069 1.5E-07 56.2 8.6 109 166-291 2-114 (265)
237 PRK12475 thiamine/molybdopteri 96.7 0.0046 1E-07 59.4 7.4 95 161-261 20-140 (338)
238 PRK00779 ornithine carbamoyltr 96.7 0.29 6.3E-06 46.4 19.5 102 163-271 150-264 (304)
239 COG1250 FadB 3-hydroxyacyl-CoA 96.7 0.03 6.6E-07 53.0 12.6 132 165-303 3-146 (307)
240 PRK14031 glutamate dehydrogena 96.7 0.01 2.3E-07 58.8 9.9 120 160-289 223-359 (444)
241 smart00859 Semialdhyde_dh Semi 96.7 0.0059 1.3E-07 49.5 6.9 95 167-272 1-99 (122)
242 PRK00048 dihydrodipicolinate r 96.6 0.0099 2.1E-07 54.9 8.8 66 166-245 2-69 (257)
243 PF03720 UDPG_MGDP_dh_C: UDP-g 96.6 0.014 2.9E-07 46.4 8.4 83 176-271 18-100 (106)
244 COG1648 CysG Siroheme synthase 96.6 0.0057 1.2E-07 54.8 6.9 97 160-272 7-103 (210)
245 PF00208 ELFV_dehydrog: Glutam 96.6 0.015 3.2E-07 53.4 9.7 119 161-292 28-165 (244)
246 PRK04207 glyceraldehyde-3-phos 96.6 0.013 2.8E-07 56.4 9.4 77 167-246 3-88 (341)
247 PRK01710 murD UDP-N-acetylmura 96.5 0.0064 1.4E-07 60.7 7.4 118 162-288 11-141 (458)
248 PRK06223 malate dehydrogenase; 96.5 0.018 4E-07 54.2 10.1 125 166-295 3-144 (307)
249 PRK03515 ornithine carbamoyltr 96.5 0.2 4.3E-06 48.2 17.1 106 162-271 153-274 (336)
250 COG1748 LYS9 Saccharopine dehy 96.5 0.0065 1.4E-07 59.2 6.6 100 166-276 2-103 (389)
251 cd00762 NAD_bind_malic_enz NAD 96.5 0.056 1.2E-06 49.7 12.4 151 160-322 20-195 (254)
252 PRK00066 ldh L-lactate dehydro 96.5 0.017 3.6E-07 55.1 9.2 103 164-272 5-122 (315)
253 PTZ00082 L-lactate dehydrogena 96.4 0.013 2.8E-07 56.0 8.4 129 163-295 4-153 (321)
254 TIGR03316 ygeW probable carbam 96.4 0.1 2.2E-06 50.5 14.5 106 162-271 167-312 (357)
255 PRK08306 dipicolinate synthase 96.4 0.038 8.1E-07 52.2 11.3 107 164-293 1-117 (296)
256 PRK00856 pyrB aspartate carbam 96.4 0.69 1.5E-05 43.8 19.7 102 162-280 153-273 (305)
257 PLN02342 ornithine carbamoyltr 96.4 0.69 1.5E-05 44.7 19.9 103 162-271 191-306 (348)
258 cd05312 NAD_bind_1_malic_enz N 96.4 0.1 2.2E-06 48.7 13.6 149 160-322 20-194 (279)
259 PRK04284 ornithine carbamoyltr 96.4 0.62 1.3E-05 44.7 19.4 106 162-271 152-273 (332)
260 cd05293 LDH_1 A subgroup of L- 96.3 0.021 4.6E-07 54.3 9.1 123 166-295 4-145 (312)
261 PRK12562 ornithine carbamoyltr 96.3 0.59 1.3E-05 44.9 18.9 106 162-271 153-274 (334)
262 cd05297 GH4_alpha_glucosidase_ 96.3 0.012 2.6E-07 58.3 7.6 117 167-287 2-160 (423)
263 PF13380 CoA_binding_2: CoA bi 96.3 0.025 5.4E-07 45.8 8.1 100 166-292 1-104 (116)
264 PRK14030 glutamate dehydrogena 96.3 0.03 6.5E-07 55.6 10.0 121 161-292 224-362 (445)
265 KOG0023 Alcohol dehydrogenase, 96.2 0.011 2.4E-07 55.8 6.5 37 164-201 181-217 (360)
266 PRK08269 3-hydroxybutyryl-CoA 96.2 0.022 4.9E-07 54.1 8.9 121 176-300 1-140 (314)
267 PRK14106 murD UDP-N-acetylmura 96.2 0.019 4.1E-07 57.0 8.7 119 162-288 2-132 (450)
268 cd00757 ThiF_MoeB_HesA_family 96.2 0.015 3.3E-07 52.5 7.2 107 161-272 17-143 (228)
269 PF13478 XdhC_C: XdhC Rossmann 96.2 0.01 2.3E-07 49.4 5.6 85 168-295 1-85 (136)
270 cd01339 LDH-like_MDH L-lactate 96.2 0.018 3.9E-07 54.3 7.9 124 168-295 1-140 (300)
271 KOG2304 3-hydroxyacyl-CoA dehy 96.2 0.0058 1.3E-07 54.9 4.1 136 163-304 9-161 (298)
272 TIGR01809 Shik-DH-AROM shikima 96.2 0.02 4.2E-07 53.7 7.9 79 162-247 122-201 (282)
273 PF02254 TrkA_N: TrkA-N domain 96.2 0.027 5.9E-07 44.8 7.7 89 168-269 1-93 (116)
274 PF03435 Saccharop_dh: Sacchar 96.1 0.0095 2.1E-07 58.0 5.9 74 168-246 1-77 (386)
275 PRK06019 phosphoribosylaminoim 96.1 0.0079 1.7E-07 58.5 5.2 36 165-201 2-37 (372)
276 COG0569 TrkA K+ transport syst 96.1 0.013 2.8E-07 53.1 5.9 77 166-248 1-78 (225)
277 PRK10637 cysG siroheme synthas 96.1 0.021 4.7E-07 57.1 8.1 96 161-272 8-103 (457)
278 PF02558 ApbA: Ketopantoate re 96.1 0.0091 2E-07 49.9 4.6 121 168-295 1-123 (151)
279 PRK08762 molybdopterin biosynt 96.0 0.047 1E-06 53.2 10.2 98 161-263 131-251 (376)
280 PRK05562 precorrin-2 dehydroge 96.0 0.029 6.2E-07 50.7 7.6 95 160-271 20-115 (223)
281 cd05291 HicDH_like L-2-hydroxy 96.0 0.039 8.6E-07 52.2 9.0 108 166-280 1-123 (306)
282 PTZ00079 NADP-specific glutama 95.9 0.07 1.5E-06 53.0 10.9 123 161-292 233-371 (454)
283 PLN02819 lysine-ketoglutarate 95.9 0.02 4.4E-07 62.3 7.6 75 164-246 568-658 (1042)
284 PRK00683 murD UDP-N-acetylmura 95.9 0.024 5.2E-07 55.9 7.7 35 165-200 3-37 (418)
285 TIGR01381 E1_like_apg7 E1-like 95.9 0.044 9.5E-07 56.6 9.6 133 119-272 307-480 (664)
286 TIGR03026 NDP-sugDHase nucleot 95.9 0.047 1E-06 53.8 9.5 89 162-271 310-409 (411)
287 PRK07688 thiamine/molybdopteri 95.9 0.023 5E-07 54.7 7.0 97 161-263 20-142 (339)
288 PRK07232 bifunctional malic en 95.8 0.22 4.8E-06 52.7 14.5 165 107-322 151-325 (752)
289 PLN02353 probable UDP-glucose 95.8 0.093 2E-06 52.8 11.1 115 162-283 321-456 (473)
290 PRK08300 acetaldehyde dehydrog 95.8 0.062 1.3E-06 50.8 9.2 96 165-276 4-108 (302)
291 PRK06444 prephenate dehydrogen 95.7 0.016 3.5E-07 51.4 5.0 59 167-274 2-61 (197)
292 PF00056 Ldh_1_N: lactate/mala 95.7 0.018 3.9E-07 48.2 5.1 106 167-278 2-122 (141)
293 PRK08644 thiamine biosynthesis 95.7 0.041 9E-07 49.3 7.7 97 161-263 24-143 (212)
294 TIGR00036 dapB dihydrodipicoli 95.7 0.048 1E-06 50.6 8.4 73 167-245 3-77 (266)
295 PRK12862 malic enzyme; Reviewe 95.7 0.32 6.8E-06 51.7 15.3 164 108-322 160-333 (763)
296 PRK05690 molybdopterin biosynt 95.7 0.032 6.9E-07 51.2 7.0 106 161-271 28-153 (245)
297 PRK02255 putrescine carbamoylt 95.7 0.09 2E-06 50.5 10.3 115 162-280 151-283 (338)
298 PRK11891 aspartate carbamoyltr 95.7 0.16 3.5E-06 50.3 12.1 102 162-271 238-354 (429)
299 COG0334 GdhA Glutamate dehydro 95.6 0.058 1.3E-06 52.7 8.7 115 161-289 203-328 (411)
300 PRK09880 L-idonate 5-dehydroge 95.6 0.082 1.8E-06 50.4 9.8 95 164-273 169-267 (343)
301 PRK11579 putative oxidoreducta 95.6 0.043 9.4E-07 52.6 7.9 66 166-246 5-74 (346)
302 TIGR00670 asp_carb_tr aspartat 95.6 0.1 2.2E-06 49.3 10.3 111 162-280 147-272 (301)
303 COG5322 Predicted dehydrogenas 95.5 0.047 1E-06 50.4 7.2 108 159-280 161-269 (351)
304 PRK12749 quinate/shikimate deh 95.5 0.14 3E-06 48.2 10.6 120 162-289 121-249 (288)
305 COG1004 Ugd Predicted UDP-gluc 95.5 0.23 4.9E-06 48.4 12.0 119 166-289 1-137 (414)
306 cd05292 LDH_2 A subgroup of L- 95.4 0.064 1.4E-06 50.8 8.0 73 167-247 2-78 (308)
307 PRK03369 murD UDP-N-acetylmura 95.3 0.051 1.1E-06 54.8 7.6 113 163-288 10-141 (488)
308 PRK12861 malic enzyme; Reviewe 95.3 0.45 9.8E-06 50.4 14.7 162 109-322 157-329 (764)
309 cd01487 E1_ThiF_like E1_ThiF_l 95.3 0.057 1.2E-06 46.8 6.8 93 167-261 1-112 (174)
310 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.076 1.6E-06 47.0 7.7 98 161-260 17-133 (197)
311 cd05188 MDR Medium chain reduc 95.2 0.2 4.4E-06 44.9 10.7 100 163-277 133-237 (271)
312 PRK05708 2-dehydropantoate 2-r 95.2 0.11 2.4E-06 49.0 9.1 125 166-296 3-127 (305)
313 PRK06270 homoserine dehydrogen 95.2 0.13 2.9E-06 49.4 9.7 121 167-291 4-145 (341)
314 PRK09496 trkA potassium transp 95.2 0.043 9.4E-07 54.3 6.5 73 166-247 1-76 (453)
315 COG0281 SfcA Malic enzyme [Ene 95.2 0.4 8.7E-06 47.0 12.7 167 107-322 165-342 (432)
316 TIGR01850 argC N-acetyl-gamma- 95.1 0.091 2E-06 50.7 8.2 101 166-278 1-105 (346)
317 cd01483 E1_enzyme_family Super 95.1 0.12 2.6E-06 42.9 8.0 31 167-198 1-32 (143)
318 PRK14804 ornithine carbamoyltr 95.1 1.6 3.4E-05 41.5 16.4 72 162-242 150-224 (311)
319 PLN02527 aspartate carbamoyltr 95.0 0.21 4.6E-06 47.3 10.3 110 162-279 148-274 (306)
320 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.07 1.5E-06 52.8 7.3 70 160-245 315-395 (415)
321 PRK04523 N-acetylornithine car 95.0 2.2 4.7E-05 41.1 17.1 77 163-243 166-251 (335)
322 PLN02948 phosphoribosylaminoim 95.0 0.048 1E-06 56.2 6.2 73 161-246 18-93 (577)
323 PLN02968 Probable N-acetyl-gam 94.9 0.061 1.3E-06 52.6 6.5 109 163-284 36-146 (381)
324 PRK00436 argC N-acetyl-gamma-g 94.9 0.068 1.5E-06 51.5 6.7 100 166-279 3-106 (343)
325 COG0169 AroE Shikimate 5-dehyd 94.9 0.35 7.6E-06 45.3 11.3 119 161-291 122-244 (283)
326 TIGR03215 ac_ald_DH_ac acetald 94.9 0.15 3.3E-06 47.8 8.7 89 167-271 3-94 (285)
327 cd01486 Apg7 Apg7 is an E1-lik 94.8 0.11 2.5E-06 48.9 7.7 102 167-273 1-141 (307)
328 PRK01438 murD UDP-N-acetylmura 94.8 0.1 2.3E-06 52.2 8.0 119 161-288 12-146 (480)
329 PRK14027 quinate/shikimate deh 94.8 0.26 5.7E-06 46.2 10.2 120 162-290 124-246 (283)
330 PF02629 CoA_binding: CoA bind 94.8 0.071 1.5E-06 41.4 5.4 73 166-254 4-79 (96)
331 PRK02006 murD UDP-N-acetylmura 94.7 0.11 2.3E-06 52.5 8.0 118 163-290 5-147 (498)
332 PRK09496 trkA potassium transp 94.7 0.17 3.7E-06 50.1 9.3 98 163-271 229-330 (453)
333 COG3288 PntA NAD/NADP transhyd 94.7 0.079 1.7E-06 49.8 6.3 111 161-275 160-286 (356)
334 PLN02520 bifunctional 3-dehydr 94.7 0.16 3.4E-06 51.9 9.1 112 162-289 376-491 (529)
335 PRK10669 putative cation:proto 94.7 0.084 1.8E-06 54.1 7.1 92 166-270 418-513 (558)
336 PRK02472 murD UDP-N-acetylmura 94.7 0.29 6.4E-06 48.4 10.8 117 163-288 3-132 (447)
337 PRK08328 hypothetical protein; 94.6 0.098 2.1E-06 47.5 6.7 106 161-272 23-150 (231)
338 PRK05600 thiamine biosynthesis 94.5 0.15 3.2E-06 49.7 8.1 101 161-263 37-157 (370)
339 PLN02602 lactate dehydrogenase 94.5 0.19 4E-06 48.7 8.6 102 166-272 38-154 (350)
340 PF00044 Gp_dh_N: Glyceraldehy 94.5 0.06 1.3E-06 45.7 4.6 36 167-202 2-38 (151)
341 TIGR01161 purK phosphoribosyla 94.4 0.051 1.1E-06 52.2 4.7 34 167-201 1-34 (352)
342 PRK05597 molybdopterin biosynt 94.4 0.12 2.7E-06 49.9 7.3 98 161-264 24-145 (355)
343 KOG2653 6-phosphogluconate deh 94.4 0.21 4.5E-06 48.0 8.4 127 166-303 7-136 (487)
344 PRK06153 hypothetical protein; 94.4 0.15 3.3E-06 49.6 7.8 108 162-275 173-301 (393)
345 COG1004 Ugd Predicted UDP-gluc 94.4 0.22 4.8E-06 48.5 8.8 89 163-270 308-406 (414)
346 COG0771 MurD UDP-N-acetylmuram 94.3 0.082 1.8E-06 52.6 5.9 134 163-305 5-159 (448)
347 PRK00421 murC UDP-N-acetylmura 94.3 0.15 3.2E-06 51.0 7.8 115 163-290 5-133 (461)
348 PRK03659 glutathione-regulated 94.3 0.14 3.1E-06 53.0 7.8 96 165-273 400-499 (601)
349 PRK07806 short chain dehydroge 94.2 0.23 4.9E-06 44.6 8.1 37 163-200 4-41 (248)
350 cd05294 LDH-like_MDH_nadp A la 94.2 0.25 5.4E-06 46.9 8.7 124 166-295 1-146 (309)
351 cd00300 LDH_like L-lactate deh 94.2 0.3 6.5E-06 46.1 9.2 99 168-272 1-115 (300)
352 TIGR02355 moeB molybdopterin s 94.2 0.15 3.3E-06 46.6 6.9 101 161-263 20-140 (240)
353 PRK00141 murD UDP-N-acetylmura 94.1 0.19 4E-06 50.6 8.1 117 161-289 11-146 (473)
354 PLN02272 glyceraldehyde-3-phos 94.1 0.09 1.9E-06 51.8 5.6 36 166-201 86-122 (421)
355 PRK04690 murD UDP-N-acetylmura 94.1 0.14 3E-06 51.4 7.1 116 163-288 6-139 (468)
356 COG0057 GapA Glyceraldehyde-3- 94.1 0.13 2.9E-06 48.8 6.5 36 167-202 3-39 (335)
357 TIGR01532 E4PD_g-proteo D-eryt 94.1 0.21 4.6E-06 47.8 7.9 32 167-199 1-36 (325)
358 PRK08192 aspartate carbamoyltr 94.0 0.35 7.6E-06 46.5 9.4 103 162-271 156-273 (338)
359 COG0673 MviM Predicted dehydro 94.0 0.25 5.4E-06 46.8 8.4 69 166-247 4-78 (342)
360 PRK12937 short chain dehydroge 93.9 0.27 5.9E-06 43.8 8.1 38 162-200 2-40 (245)
361 PRK13814 pyrB aspartate carbam 93.9 0.3 6.4E-06 46.5 8.5 94 163-271 155-263 (310)
362 PRK05086 malate dehydrogenase; 93.8 0.32 7E-06 46.2 8.7 107 166-281 1-125 (312)
363 cd05290 LDH_3 A subgroup of L- 93.8 0.19 4.1E-06 47.7 7.1 74 167-246 1-78 (307)
364 TIGR02853 spore_dpaA dipicolin 93.8 0.62 1.4E-05 43.7 10.5 105 165-292 1-115 (287)
365 PF03949 Malic_M: Malic enzyme 93.7 0.51 1.1E-05 43.5 9.4 130 123-285 4-157 (255)
366 cd08230 glucose_DH Glucose deh 93.7 0.28 6.1E-06 46.9 8.2 96 164-273 172-270 (355)
367 COG0039 Mdh Malate/lactate deh 93.6 0.16 3.5E-06 48.2 6.2 108 166-282 1-126 (313)
368 PRK06392 homoserine dehydrogen 93.6 0.37 8.1E-06 46.1 8.7 121 167-290 2-135 (326)
369 PRK04148 hypothetical protein; 93.6 0.24 5.2E-06 41.2 6.4 36 164-201 16-51 (134)
370 TIGR01772 MDH_euk_gproteo mala 93.6 0.26 5.7E-06 46.8 7.6 103 167-279 1-121 (312)
371 TIGR01761 thiaz-red thiazoliny 93.6 0.36 7.8E-06 46.6 8.6 67 166-246 4-72 (343)
372 PRK07984 enoyl-(acyl carrier p 93.5 0.29 6.2E-06 45.0 7.5 35 163-198 4-41 (262)
373 cd08239 THR_DH_like L-threonin 93.5 0.35 7.6E-06 45.7 8.4 95 164-273 163-263 (339)
374 PRK08223 hypothetical protein; 93.5 0.33 7.1E-06 45.6 7.9 101 161-262 23-144 (287)
375 COG2344 AT-rich DNA-binding pr 93.4 0.15 3.2E-06 44.8 5.0 67 167-246 86-156 (211)
376 PRK04308 murD UDP-N-acetylmura 93.4 0.31 6.7E-06 48.4 8.1 117 163-288 3-134 (445)
377 PRK10206 putative oxidoreducta 93.4 0.26 5.6E-06 47.4 7.3 68 167-247 3-75 (344)
378 PRK03562 glutathione-regulated 93.4 0.28 6E-06 51.1 8.0 94 165-271 400-497 (621)
379 PLN02819 lysine-ketoglutarate 93.4 0.26 5.7E-06 53.9 8.0 107 163-272 201-338 (1042)
380 PRK06701 short chain dehydroge 93.3 0.27 5.7E-06 45.9 7.1 39 161-200 42-81 (290)
381 COG1893 ApbA Ketopantoate redu 93.3 0.33 7.1E-06 46.1 7.8 119 166-291 1-119 (307)
382 TIGR02717 AcCoA-syn-alpha acet 93.3 0.65 1.4E-05 46.4 10.2 109 163-294 5-125 (447)
383 cd01485 E1-1_like Ubiquitin ac 93.2 0.36 7.8E-06 42.7 7.4 37 161-198 15-52 (198)
384 COG0540 PyrB Aspartate carbamo 93.2 0.27 5.8E-06 46.4 6.7 101 163-271 156-271 (316)
385 PRK15076 alpha-galactosidase; 93.2 0.35 7.7E-06 48.0 8.1 125 166-295 2-169 (431)
386 PRK07200 aspartate/ornithine c 93.1 1.7 3.6E-05 42.8 12.5 106 162-271 184-329 (395)
387 cd08281 liver_ADH_like1 Zinc-d 93.1 0.42 9.1E-06 46.1 8.4 95 164-273 191-291 (371)
388 PRK15182 Vi polysaccharide bio 93.1 0.59 1.3E-05 46.4 9.5 96 160-276 309-416 (425)
389 PRK07411 hypothetical protein; 93.0 0.29 6.3E-06 48.0 7.2 102 161-264 34-155 (390)
390 PRK06349 homoserine dehydrogen 93.0 0.61 1.3E-05 46.3 9.5 108 166-291 4-124 (426)
391 PF03447 NAD_binding_3: Homose 93.0 0.15 3.3E-06 40.8 4.4 87 172-277 1-95 (117)
392 PF13460 NAD_binding_10: NADH( 93.0 0.15 3.3E-06 43.6 4.6 70 168-249 1-73 (183)
393 PLN00106 malate dehydrogenase 92.9 0.32 6.9E-06 46.5 7.0 104 164-274 17-137 (323)
394 PRK06128 oxidoreductase; Provi 92.8 0.4 8.6E-06 44.8 7.5 36 162-198 52-88 (300)
395 PLN02586 probable cinnamyl alc 92.7 0.55 1.2E-05 45.2 8.5 36 164-200 183-218 (360)
396 PF00070 Pyr_redox: Pyridine n 92.6 0.23 5E-06 36.9 4.6 33 167-200 1-33 (80)
397 cd08293 PTGR2 Prostaglandin re 92.6 0.65 1.4E-05 43.9 8.8 93 165-272 155-254 (345)
398 TIGR03451 mycoS_dep_FDH mycoth 92.6 0.59 1.3E-05 44.7 8.6 95 164-273 176-277 (358)
399 PRK07877 hypothetical protein; 92.5 0.36 7.8E-06 51.0 7.4 100 161-263 103-222 (722)
400 PRK07370 enoyl-(acyl carrier p 92.5 0.38 8.3E-06 43.8 6.9 35 162-197 3-40 (258)
401 TIGR03366 HpnZ_proposed putati 92.5 0.71 1.5E-05 42.6 8.7 93 164-273 120-219 (280)
402 PF05368 NmrA: NmrA-like famil 92.4 0.34 7.4E-06 43.3 6.2 72 168-247 1-75 (233)
403 PF00899 ThiF: ThiF family; I 92.3 0.15 3.3E-06 41.9 3.6 34 165-199 2-36 (135)
404 TIGR01851 argC_other N-acetyl- 92.3 0.55 1.2E-05 44.6 7.7 77 167-272 3-80 (310)
405 PRK01390 murD UDP-N-acetylmura 92.3 0.2 4.4E-06 49.9 5.1 112 162-288 6-138 (460)
406 cd05283 CAD1 Cinnamyl alcohol 92.2 0.66 1.4E-05 43.9 8.3 95 164-273 169-264 (337)
407 PRK12742 oxidoreductase; Provi 92.2 0.93 2E-05 40.2 8.9 36 162-198 3-39 (237)
408 TIGR01202 bchC 2-desacetyl-2-h 92.2 0.48 1E-05 44.5 7.3 87 164-272 144-231 (308)
409 TIGR03201 dearomat_had 6-hydro 92.2 0.75 1.6E-05 43.9 8.7 37 164-201 166-202 (349)
410 PRK11863 N-acetyl-gamma-glutam 92.2 0.49 1.1E-05 45.0 7.3 77 166-272 3-81 (313)
411 KOG2711 Glycerol-3-phosphate d 92.2 0.47 1E-05 45.3 7.0 111 163-275 19-142 (372)
412 cd08296 CAD_like Cinnamyl alco 92.2 0.9 1.9E-05 42.9 9.1 94 164-272 163-259 (333)
413 PRK12550 shikimate 5-dehydroge 92.1 0.61 1.3E-05 43.4 7.8 105 165-289 122-232 (272)
414 PRK09189 uroporphyrinogen-III 92.1 1.9 4.2E-05 38.9 10.9 55 16-70 1-56 (240)
415 smart00846 Gp_dh_N Glyceraldeh 92.0 0.39 8.4E-06 40.6 5.7 31 167-197 2-33 (149)
416 PTZ00325 malate dehydrogenase; 92.0 0.46 1E-05 45.4 6.9 106 162-275 5-128 (321)
417 TIGR02825 B4_12hDH leukotriene 91.9 0.88 1.9E-05 42.7 8.7 94 164-273 138-238 (325)
418 cd01337 MDH_glyoxysomal_mitoch 91.8 0.72 1.6E-05 43.8 7.9 102 167-279 2-122 (310)
419 PLN02178 cinnamyl-alcohol dehy 91.7 0.74 1.6E-05 44.7 8.2 36 164-200 178-213 (375)
420 PRK07878 molybdopterin biosynt 91.7 0.54 1.2E-05 46.1 7.1 102 161-264 38-159 (392)
421 cd05298 GH4_GlvA_pagL_like Gly 91.7 0.83 1.8E-05 45.5 8.5 125 166-294 1-165 (437)
422 cd08234 threonine_DH_like L-th 91.6 0.74 1.6E-05 43.1 7.9 97 164-275 159-260 (334)
423 PRK07523 gluconate 5-dehydroge 91.6 0.62 1.3E-05 42.0 7.1 38 162-200 7-45 (255)
424 PLN02740 Alcohol dehydrogenase 91.6 0.94 2E-05 43.8 8.7 36 164-200 198-234 (381)
425 PF04016 DUF364: Domain of unk 91.5 0.4 8.7E-06 40.4 5.3 102 163-290 9-132 (147)
426 COG2227 UbiG 2-polyprenyl-3-me 91.3 0.97 2.1E-05 41.2 7.8 94 163-270 58-159 (243)
427 cd05296 GH4_P_beta_glucosidase 91.3 1.5 3.2E-05 43.5 9.8 127 166-295 1-166 (419)
428 TIGR02822 adh_fam_2 zinc-bindi 91.3 0.89 1.9E-05 43.1 8.1 91 164-273 165-255 (329)
429 PLN02214 cinnamoyl-CoA reducta 91.2 0.65 1.4E-05 44.4 7.1 81 162-245 7-90 (342)
430 COG1063 Tdh Threonine dehydrog 91.2 1.3 2.7E-05 42.8 9.1 94 166-273 170-270 (350)
431 PTZ00188 adrenodoxin reductase 91.2 1.2 2.5E-05 45.1 8.9 87 161-247 35-137 (506)
432 PLN02514 cinnamyl-alcohol dehy 91.0 1.1 2.4E-05 42.9 8.6 95 164-272 180-275 (357)
433 PRK13529 malate dehydrogenase; 91.0 7.5 0.00016 39.9 14.6 181 107-322 261-471 (563)
434 PLN03154 putative allyl alcoho 91.0 1.2 2.6E-05 42.6 8.7 94 164-272 158-258 (348)
435 cd08301 alcohol_DH_plants Plan 90.9 1.2 2.5E-05 42.8 8.6 36 164-200 187-223 (369)
436 PRK10309 galactitol-1-phosphat 90.9 1.2 2.6E-05 42.3 8.6 94 164-272 160-260 (347)
437 PLN00112 malate dehydrogenase 90.7 2.3 5.1E-05 42.4 10.6 115 166-288 101-240 (444)
438 KOG0022 Alcohol dehydrogenase, 90.7 0.36 7.8E-06 45.7 4.5 38 163-201 191-229 (375)
439 COG0078 ArgF Ornithine carbamo 90.6 7.5 0.00016 36.7 13.1 105 163-271 151-269 (310)
440 cd08233 butanediol_DH_like (2R 90.5 1.7 3.7E-05 41.2 9.3 95 164-273 172-273 (351)
441 cd05197 GH4_glycoside_hydrolas 90.5 1.1 2.5E-05 44.4 8.2 126 167-295 2-166 (425)
442 PRK13376 pyrB bifunctional asp 90.4 1.1 2.5E-05 45.5 8.2 102 162-271 171-292 (525)
443 PRK08324 short chain dehydroge 90.3 0.79 1.7E-05 48.2 7.3 40 161-201 418-458 (681)
444 cd08245 CAD Cinnamyl alcohol d 90.3 1.6 3.5E-05 40.8 8.8 94 164-272 162-256 (330)
445 TIGR02818 adh_III_F_hyde S-(hy 90.3 1.3 2.9E-05 42.6 8.4 37 164-201 185-222 (368)
446 COG4007 Predicted dehydrogenas 90.2 0.66 1.4E-05 42.8 5.6 97 177-287 33-129 (340)
447 PF10087 DUF2325: Uncharacteri 90.1 2.1 4.6E-05 33.1 7.9 80 17-118 1-84 (97)
448 PF08123 DOT1: Histone methyla 90.1 0.32 7E-06 43.4 3.6 106 167-275 45-161 (205)
449 PLN03209 translocon at the inn 90.1 0.78 1.7E-05 47.2 6.7 38 163-201 78-116 (576)
450 cd08260 Zn_ADH6 Alcohol dehydr 90.0 1.6 3.5E-05 41.2 8.6 95 164-273 165-265 (345)
451 PRK10537 voltage-gated potassi 90.0 1.3 2.8E-05 43.5 8.0 90 165-269 240-333 (393)
452 TIGR01759 MalateDH-SF1 malate 90.0 1.1 2.4E-05 42.8 7.3 106 167-281 5-136 (323)
453 cd08277 liver_alcohol_DH_like 89.8 1.9 4.1E-05 41.4 9.0 38 163-201 183-221 (365)
454 cd08269 Zn_ADH9 Alcohol dehydr 89.7 1.9 4E-05 39.8 8.6 95 164-273 129-230 (312)
455 PRK06172 short chain dehydroge 89.7 0.7 1.5E-05 41.5 5.6 39 162-201 4-43 (253)
456 PRK07231 fabG 3-ketoacyl-(acyl 89.6 0.91 2E-05 40.5 6.3 39 162-201 2-41 (251)
457 PRK03803 murD UDP-N-acetylmura 89.6 0.5 1.1E-05 47.0 4.9 113 165-288 6-132 (448)
458 PRK06114 short chain dehydroge 89.6 0.78 1.7E-05 41.4 5.8 38 162-200 5-43 (254)
459 cd08295 double_bond_reductase_ 89.6 2 4.3E-05 40.6 8.8 94 164-272 151-251 (338)
460 PRK01368 murD UDP-N-acetylmura 89.6 0.49 1.1E-05 47.3 4.8 111 164-288 5-128 (454)
461 PRK10083 putative oxidoreducta 89.5 1.8 3.9E-05 40.7 8.5 95 164-273 160-260 (339)
462 cd08294 leukotriene_B4_DH_like 89.4 1.9 4.1E-05 40.2 8.5 93 164-272 143-241 (329)
463 PRK08265 short chain dehydroge 89.3 1.4 2.9E-05 40.1 7.2 38 162-200 3-41 (261)
464 PRK05866 short chain dehydroge 89.3 1.1 2.4E-05 41.7 6.8 40 160-200 35-75 (293)
465 cd01338 MDH_choloroplast_like 89.3 0.82 1.8E-05 43.7 5.9 111 166-285 3-139 (322)
466 PRK02705 murD UDP-N-acetylmura 89.2 1.2 2.7E-05 44.2 7.5 116 167-288 2-133 (459)
467 PTZ00317 NADP-dependent malic 89.2 12 0.00025 38.5 14.2 178 108-322 264-470 (559)
468 PRK07326 short chain dehydroge 89.2 0.98 2.1E-05 40.0 6.1 37 163-200 4-41 (237)
469 PRK08374 homoserine dehydrogen 89.1 1.4 3E-05 42.4 7.3 114 166-289 3-140 (336)
470 cd08231 MDR_TM0436_like Hypoth 89.1 2.2 4.7E-05 40.7 8.8 95 164-273 177-281 (361)
471 PLN03129 NADP-dependent malic 89.0 11 0.00024 38.9 13.9 176 107-322 287-490 (581)
472 cd08237 ribitol-5-phosphate_DH 89.0 2.1 4.7E-05 40.7 8.7 91 164-272 163-256 (341)
473 PRK06196 oxidoreductase; Provi 88.9 1.3 2.9E-05 41.5 7.1 39 161-200 22-61 (315)
474 PRK06841 short chain dehydroge 88.9 1.9 4E-05 38.7 7.8 38 162-200 12-50 (255)
475 PRK03806 murD UDP-N-acetylmura 88.9 0.66 1.4E-05 45.9 5.2 113 163-288 4-129 (438)
476 KOG0399 Glutamate synthase [Am 88.9 2.4 5.2E-05 46.7 9.3 94 152-247 1773-1881(2142)
477 PRK12747 short chain dehydroge 88.8 2.2 4.7E-05 38.4 8.2 34 163-197 2-36 (252)
478 KOG4230 C1-tetrahydrofolate sy 88.8 1.3 2.9E-05 45.0 7.1 80 161-276 158-238 (935)
479 TIGR01832 kduD 2-deoxy-D-gluco 88.7 1.6 3.4E-05 39.0 7.1 38 162-200 2-40 (248)
480 cd08278 benzyl_alcohol_DH Benz 88.7 2.8 6.2E-05 40.2 9.3 96 164-274 186-287 (365)
481 cd08255 2-desacetyl-2-hydroxye 88.7 2.1 4.5E-05 38.9 8.0 93 164-274 97-192 (277)
482 cd01488 Uba3_RUB Ubiquitin act 88.6 2.3 5E-05 40.1 8.3 107 167-275 1-131 (291)
483 PRK12769 putative oxidoreducta 88.6 1.4 3E-05 46.1 7.6 36 163-199 325-360 (654)
484 PRK07904 short chain dehydroge 88.6 2.1 4.6E-05 38.8 7.9 38 164-201 7-45 (253)
485 PRK14851 hypothetical protein; 88.5 0.78 1.7E-05 48.2 5.6 37 161-198 39-76 (679)
486 cd01491 Ube1_repeat1 Ubiquitin 88.4 4 8.6E-05 38.4 9.7 106 161-271 15-136 (286)
487 TIGR01142 purT phosphoribosylg 88.4 0.63 1.4E-05 45.0 4.6 34 167-201 1-34 (380)
488 PRK07533 enoyl-(acyl carrier p 88.3 3.4 7.3E-05 37.5 9.1 37 162-199 7-46 (258)
489 PLN02427 UDP-apiose/xylose syn 88.3 1 2.2E-05 43.6 6.0 40 160-200 9-50 (386)
490 PLN02827 Alcohol dehydrogenase 88.1 2.8 6.1E-05 40.6 8.9 36 164-200 193-229 (378)
491 PRK08217 fabG 3-ketoacyl-(acyl 88.1 0.9 2E-05 40.5 5.1 37 163-200 3-40 (253)
492 PRK07825 short chain dehydroge 88.1 2 4.3E-05 39.1 7.5 38 162-200 2-40 (273)
493 cd01336 MDH_cytoplasmic_cytoso 88.0 1.3 2.8E-05 42.4 6.4 107 167-280 4-134 (325)
494 KOG1207 Diacetyl reductase/L-x 88.0 2.8 6.2E-05 36.6 7.7 39 162-201 4-43 (245)
495 cd08254 hydroxyacyl_CoA_DH 6-h 88.0 2.9 6.2E-05 39.0 8.7 94 164-272 165-263 (338)
496 PLN02358 glyceraldehyde-3-phos 88.0 1 2.2E-05 43.3 5.6 36 166-201 6-42 (338)
497 TIGR01318 gltD_gamma_fam gluta 88.0 2 4.3E-05 43.1 7.9 85 163-248 139-238 (467)
498 PRK05928 hemD uroporphyrinogen 87.9 9.2 0.0002 34.1 11.7 148 15-198 1-157 (249)
499 PRK08664 aspartate-semialdehyd 87.9 2.4 5.1E-05 40.9 8.2 33 166-198 4-37 (349)
500 PRK14573 bifunctional D-alanyl 87.9 1.6 3.5E-05 46.9 7.7 111 166-289 5-129 (809)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=6e-77 Score=574.29 Aligned_cols=326 Identities=94% Similarity=1.420 Sum_probs=278.4
Q ss_pred CCCceeEEEeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHH
Q 020301 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (328)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~ 80 (328)
|+||++|+|.+|+++++|+++.++++....+.|++.+++++.....+...+.+++.+.+.+++|++++...+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999999886434677877667776433223346788998887546999998877789999999
Q ss_pred HhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccc
Q 020301 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (328)
Q Consensus 81 ~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~ 160 (328)
+++++++|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+|.+....|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99987779999999999999999999999999999999999999999999999999999999999999998886544457
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+|.|||+||||+|+||+++|++++++|||+|++|||+.....+.+...|+..++..+..+..+....+|+|++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998753322211112111111111111122235899999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH 320 (328)
++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCCc
Q 020301 321 IASASK 326 (328)
Q Consensus 321 ia~~t~ 326 (328)
+||+|.
T Consensus 321 iag~T~ 326 (386)
T PLN02306 321 IASASK 326 (386)
T ss_pred cccCcH
Confidence 999984
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-72 Score=528.87 Aligned_cols=286 Identities=37% Similarity=0.521 Sum_probs=250.2
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
++++++++.++.+..+ +.+... ..+++.. ....+.+++.+.+. ++|++++ +.+++++++++.+++| |+|++.
T Consensus 2 ~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~--~~~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~ 73 (324)
T COG0111 2 MMIKVLVTDPLAPDAL-EELLAA-YDVEVPD--GPDLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGRA 73 (324)
T ss_pred CcceeeccCccCHHHH-HHHHhc-ccccccc--ccccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence 5788999999887654 445443 3333322 22345677777787 7999988 6789999999999987 999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~ 173 (328)
|+|+||||+++++++||.|+|+|+.|+.+||||++++||+++|+++.+++.+++|.|+. ..+.|.+|+|||+||||+
T Consensus 74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~ 150 (324)
T COG0111 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL 150 (324)
T ss_pred cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998864 335678999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (328)
Q Consensus 174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l 253 (328)
|+||+.+|+++ ++|||+|++|||+.....+. ..+.....+|+++|++||||++|+|+|++|+||
T Consensus 151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~ 214 (324)
T COG0111 151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRGL 214 (324)
T ss_pred CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence 99999999996 89999999999976542211 112234578999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCCCCCc
Q 020301 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~ 326 (328)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++||||||+|.
T Consensus 215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ 288 (324)
T COG0111 215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTD 288 (324)
T ss_pred cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCH
Confidence 99999999999999999999999999999999999999999999999999876 69999999999999999996
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.6e-70 Score=519.88 Aligned_cols=289 Identities=34% Similarity=0.523 Sum_probs=249.2
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
+++||+++.++++ ...+.|++. +++..... ....+.+++.+.+. ++|++++.. .++++++++++|+| |+|++.
T Consensus 1 ~~~~vl~~~~~~~-~~~~~l~~~-~~v~~~~~-~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~ 73 (323)
T PRK15409 1 MKPSVILYKALPD-DLLQRLEEH-FTVTQVAN-LSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI 73 (323)
T ss_pred CCceEEEeCCCCH-HHHHHHHhc-CcEEEcCC-CCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence 4688999998865 345677654 45543321 12346678888887 799998764 47999999999988 999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~ 173 (328)
|+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus 74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~ 153 (323)
T PRK15409 74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM 153 (323)
T ss_pred ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999864422223578999999999999
Q ss_pred CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301 174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (328)
Q Consensus 174 G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~ 252 (328)
|+||+.+|+++ + +|||+|++|||+....... . .+. .+.++++++++||+|++|||+|++|++
T Consensus 154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---~------------~~~-~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---R------------FNA-RYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---h------------cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 99999999996 7 9999999999975432110 0 011 246999999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~ 326 (328)
|||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~ 291 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATH 291 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcH
Confidence 99999999999999999999999999999999999999999999999999985 579999999999999999985
No 4
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.1e-70 Score=519.13 Aligned_cols=289 Identities=40% Similarity=0.579 Sum_probs=250.1
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
+|++++.+.++++. ..+.+.+. +++......... .. ++.+... ++|++++....+++.++++++|+| |+|+..
T Consensus 1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~ 73 (324)
T COG1052 1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR 73 (324)
T ss_pred CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence 35668888888875 35666654 666654432122 22 5566665 799999988889999999999987 999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCC-CCcccccccCCCEEEEEe
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIG 172 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~-~~~~~~~~l~g~tvgIiG 172 (328)
|+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|.|..|. .....+.+++|||+||||
T Consensus 74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG 153 (324)
T COG1052 74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG 153 (324)
T ss_pred ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998663 333567899999999999
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (328)
Q Consensus 173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~ 252 (328)
+|+||+++|+++ ++|||+|+||||++.+..++. ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus 154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence 999999999996 799999999999976332211 111 345699999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCC---eEEcCCCCCCCc
Q 020301 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASK 326 (328)
Q Consensus 253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~ 326 (328)
|||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||.+ ++||++++| |++|||+||+|.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ 294 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATE 294 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccH
Confidence 99999999999999999999999999999999999999999999999999985 678888777 999999999985
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-69 Score=507.40 Aligned_cols=279 Identities=29% Similarity=0.448 Sum_probs=237.8
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (328)
Q Consensus 17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g 94 (328)
||++..+ +++ ...+.|++.+ ++.... . .+++++.+.+. ++|++++. ..++++++++++|+| |+|++.|
T Consensus 2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP--T--TSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCCh-hhHHHHhhCc-eEEEeC--C--CCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4555544 333 2346676643 554322 1 25678888887 69998876 568999999999987 9999999
Q ss_pred ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 020301 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (328)
Q Consensus 95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~~~~l~g~tvgIi 171 (328)
+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+.... ..+++|+|||+|||
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999986432111 12478999999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (328)
Q Consensus 172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~ 251 (328)
|+|+||+++|+++ ++|||+|++|||+..... ..+ ...+|++++++||+|++|||+|++|+
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence 9999999999996 899999999999743210 011 24699999999999999999999999
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccC---CCeEEcCCCCCCCc
Q 020301 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM---KNAIVVPHIASASK 326 (328)
Q Consensus 252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~---~nvilTPHia~~t~ 326 (328)
|+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||++ ++|||++ |||++|||+||+|.
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~ 289 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK 289 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence 99999999999999999999999999999999999999999 999999999986 4799987 89999999999984
No 6
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-69 Score=493.34 Aligned_cols=283 Identities=34% Similarity=0.516 Sum_probs=255.5
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 020301 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (328)
Q Consensus 17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G 96 (328)
+||+++++... .++.|++.+.++++.. ..+.||+...+. ++|++++++.+++++++|+...+ ++|+|.+.|+|
T Consensus 8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG 80 (406)
T ss_pred eEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence 79999999875 5789999998887543 246789999998 79999999999999999985433 45999999999
Q ss_pred CCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH
Q 020301 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (328)
Q Consensus 97 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I 176 (328)
+||||+++|.++||.|.|+|.+|+.++||++++++++++|++++.+..+|+|+|+. ..+.|.+|+|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999998753 457899999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
|+++|+++ ++|||+|++|||.......+ ..|. ...+++|++..||||++|||+||+|++|+|.
T Consensus 158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~gv------q~vsl~Eil~~ADFitlH~PLtP~T~~lin~ 220 (406)
T KOG0068|consen 158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFGV------QLVSLEEILPKADFITLHVPLTPSTEKLLND 220 (406)
T ss_pred hHHHHHHH-HhcCceEEeecCCCchHHHH----------hccc------eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence 99999996 89999999999987543211 1121 3479999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC---CCCcccCCCeEEcCCCCCCCc
Q 020301 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~ 326 (328)
+.|++||+|..+||+|||++||+.||++||++|+++|||+|||+.||+. ++.|.++|||++|||+|++|.
T Consensus 221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~ 293 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTE 293 (406)
T ss_pred HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchH
Confidence 9999999999999999999999999999999999999999999999986 468999999999999999984
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-68 Score=502.49 Aligned_cols=267 Identities=30% Similarity=0.373 Sum_probs=233.5
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCC
Q 020301 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (328)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~g 109 (328)
.+.|++...++.... ..+.+++.+.+. ++|++++. ..++++++++++|+| |+|++.|+|+|+||++++.++|
T Consensus 18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 355665444554432 125678888887 69988875 457999999999987 9999999999999999999999
Q ss_pred ceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 110 I~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
|.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|... .+.+++|.|||+||||+|+||+++|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999999755321 1235689999999999999999999996 8
Q ss_pred cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCc
Q 020301 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (328)
Q Consensus 187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga 266 (328)
+|||+|++||++.... . ....+|++++++||+|++|||+|++|+|+||++.|++||+|+
T Consensus 169 ~fgm~V~~~~~~~~~~---------------~------~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA---------------R------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred hCCCEEEEECCCCCcc---------------c------ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 9999999999864220 0 123589999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCccc--CCCeEEcCCCCCCCc
Q 020301 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASK 326 (328)
Q Consensus 267 ~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~ 326 (328)
+|||+|||++||++||++||++|+|+||+||||++||++. +|||+ +|||++|||+||+|.
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSR 290 (317)
T ss_pred EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCH
Confidence 9999999999999999999999999999999999999864 79995 899999999999984
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-68 Score=517.65 Aligned_cols=289 Identities=29% Similarity=0.409 Sum_probs=253.6
Q ss_pred EeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCC
Q 020301 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (328)
Q Consensus 9 ~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~ 87 (328)
|+-|.++|||+++.++++. ..+.|++.++ ++.... ...+++++.+.+. ++|+++++...++++++++++|+|
T Consensus 4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L-- 76 (409)
T PRK11790 4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL-- 76 (409)
T ss_pred CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--
Confidence 4567888999999887653 4577777666 665432 2346788888887 799998877678999999999987
Q ss_pred ceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 020301 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (328)
Q Consensus 88 k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~t 167 (328)
|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+ ...+.+|.|||
T Consensus 77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gkt 153 (409)
T PRK11790 77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKT 153 (409)
T ss_pred eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999988643 23468999999
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt 247 (328)
+||||+|+||+.+|+++ ++|||+|++|||+..... + ......+|+|++++||+|++|||+|
T Consensus 154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCC
Confidence 99999999999999996 799999999998643210 0 1123458999999999999999999
Q ss_pred hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-----CCcccCCCeEEcCCCC
Q 020301 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA 322 (328)
Q Consensus 248 ~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia 322 (328)
++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|
T Consensus 215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia 294 (409)
T PRK11790 215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence 99999999999999999999999999999999999999999999999999999999863 5899999999999999
Q ss_pred CCCc
Q 020301 323 SASK 326 (328)
Q Consensus 323 ~~t~ 326 (328)
|+|.
T Consensus 295 ~~t~ 298 (409)
T PRK11790 295 GSTQ 298 (409)
T ss_pred CCHH
Confidence 9984
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.1e-67 Score=503.14 Aligned_cols=290 Identities=44% Similarity=0.682 Sum_probs=250.7
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
+++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|++++....++++++++++|+| |+|+++
T Consensus 1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~ 74 (333)
T PRK13243 1 MKPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANY 74 (333)
T ss_pred CCceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence 4688999888764 345667654 4554332 122346788888887 799999876668999999999987 999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCC----CCCCcccccccCCCEEE
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG 169 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~~~~l~g~tvg 169 (328)
|+|+|+||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|.. |......|++|+|||+|
T Consensus 75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg 154 (333)
T PRK13243 75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG 154 (333)
T ss_pred CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999864 22222356899999999
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (328)
Q Consensus 170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~ 249 (328)
|||+|+||+.+|+++ ++|||+|++|||+....... ..+ . ...++++++++||+|++|+|+|++
T Consensus 155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~~-----~-~~~~l~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------ELG-----A-EYRPLEELLRESDFVSLHVPLTKE 217 (333)
T ss_pred EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------HcC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence 999999999999997 79999999999986432110 001 1 235899999999999999999999
Q ss_pred hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~ 294 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATF 294 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999984
No 10
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2e-67 Score=497.35 Aligned_cols=252 Identities=31% Similarity=0.419 Sum_probs=225.5
Q ss_pred CCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHH
Q 020301 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (328)
Q Consensus 50 ~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~ 129 (328)
.+++++.+.+. ++|++++. ..++++++++++|+| |+|++.|+|+|+||+++|.++||.|+|+||+++.+||||+++
T Consensus 33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 35788888887 69988774 457999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 020301 130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (328)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~ 206 (328)
+||+++|++..+++.+++|.|..+... ...+++|+|||+||||+|+||+++|+++ ++|||+|++||++....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~---- 183 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV---- 183 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence 999999999999999999998643211 1234689999999999999999999996 89999999999764210
Q ss_pred HhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL 286 (328)
. ...+.+|+|++++||+|++|||+|++|+|+||++.|++||||++|||+|||++||++||++||
T Consensus 184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 0 012368999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEEEeCCCCCCCC-CCCcc----cCCCeEEcCCCCCCCc
Q 020301 287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASK 326 (328)
Q Consensus 287 ~~g~i~gaalDV~~~EP~~-~~~L~----~~~nvilTPHia~~t~ 326 (328)
++|+|+||+||||++||++ ++||| ++|||++|||+||+|.
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~ 292 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASD 292 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcH
Confidence 9999999999999999985 57898 5999999999999985
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-65 Score=489.51 Aligned_cols=277 Identities=22% Similarity=0.268 Sum_probs=241.0
Q ss_pred HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301 29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106 (328)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~ 106 (328)
..+.|++.++++.+... ...+.+++.+.+. ++|++|+.. +.++++++++++|+| |+|++.|+|+|+||+++|.
T Consensus 67 ~~~~l~~~g~~~v~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~ 141 (386)
T PLN03139 67 IRDWLESQGHQYIVTDD--KEGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAA 141 (386)
T ss_pred HHHHHHhcCCeEEEeCC--CCCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHH
Confidence 34677888888766543 2346788888887 799998864 247999999999988 9999999999999999999
Q ss_pred hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
++||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.|||+||||+|+||+.+|++| +
T Consensus 142 ~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~ 219 (386)
T PLN03139 142 AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-K 219 (386)
T ss_pred HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999988631 112346799999999999999999999997 7
Q ss_pred cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCc
Q 020301 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (328)
Q Consensus 187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga 266 (328)
+|||+|++||++..+... .. . .+.....++++++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus 220 afG~~V~~~d~~~~~~~~--~~-------~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 285 (386)
T PLN03139 220 PFNCNLLYHDRLKMDPEL--EK-------E-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGV 285 (386)
T ss_pred HCCCEEEEECCCCcchhh--Hh-------h-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence 999999999998532110 00 0 112234689999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 267 ~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~ 326 (328)
+|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.
T Consensus 286 ~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~ 346 (386)
T PLN03139 286 LIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTI 346 (386)
T ss_pred EEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCH
Confidence 999999999999999999999999999999999999986 579999999999999999884
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-65 Score=488.50 Aligned_cols=276 Identities=25% Similarity=0.295 Sum_probs=240.5
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHh
Q 020301 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (328)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~ 107 (328)
.+.|++.++++.+.. +...+++++.+.+. ++|++++.. ..++++++++++|+| |+|++.|+|+|+||+++|.+
T Consensus 61 ~~~l~~~g~e~~~~~--~~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~ 135 (385)
T PRK07574 61 RKFLEERGHELVVTS--DKDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE 135 (385)
T ss_pred HHHHHhcCcEEEEeC--CCCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence 356788888876543 22346788888887 799998863 357899999999987 99999999999999999999
Q ss_pred CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhc
Q 020301 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (328)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~ 187 (328)
+||.|+|++++|+.+||||++++||+++|++..+++.+++|.|..+.. ...+++|.|+||||||+|+||+.+|++| ++
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~ 213 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP 213 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence 999999999999999999999999999999999999999999864321 1246789999999999999999999997 79
Q ss_pred CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcE
Q 020301 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (328)
Q Consensus 188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~ 267 (328)
|||+|++|||+..+.... . ..+...+.+++|++++||+|++|||+|++|+++||++.|++||+|++
T Consensus 214 fG~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 279 (385)
T PRK07574 214 FDVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279 (385)
T ss_pred CCCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence 999999999986321100 0 01122346899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 268 lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~ 326 (328)
|||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||+|.
T Consensus 280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~ 339 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTL 339 (385)
T ss_pred EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcH
Confidence 99999999999999999999999999999999999986 579999999999999999984
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.8e-64 Score=483.07 Aligned_cols=297 Identities=26% Similarity=0.306 Sum_probs=244.0
Q ss_pred EeCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhcc
Q 020301 9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA 85 (328)
Q Consensus 9 ~~~~~~~~~vlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l 85 (328)
+|..++++|||++.+..+. .+ .+.++..++ ..+. ..+++++.+.+. ++|++++. ..++++++++++|+|
T Consensus 12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L 83 (347)
T PLN02928 12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYPF--IQVD----AVAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM 83 (347)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHhhcCCe--eEec----CCCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence 4556678899999877653 12 344544332 2222 135677887776 79988875 457899999999987
Q ss_pred CCceEEEccccCCccChhHHHhCCceEecCCCC---CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccc
Q 020301 86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL 162 (328)
Q Consensus 86 ~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~ 162 (328)
|+|++.|+|+|++|++++.++||.|+|+|++ ++.+||||++++||+++|++..+++.+++|.|.. ..+.+
T Consensus 84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~ 156 (347)
T PLN02928 84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDT 156 (347)
T ss_pred --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccC
Confidence 9999999999999999999999999999986 7899999999999999999999999999997742 24678
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI 240 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV 240 (328)
|.|||+||||+|+||+.+|+++ ++|||+|++|||+........ ++ ......... ......+|++++++||+|
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~L~ell~~aDiV 230 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDG---LL--IPNGDVDDLVDEKGGHEDIYEFAGEADIV 230 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhh---hc--cccccccccccccCcccCHHHHHhhCCEE
Confidence 9999999999999999999997 799999999999753211100 00 000000000 001346999999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVP 319 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTP 319 (328)
++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++||
T Consensus 231 vl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTP 310 (347)
T PLN02928 231 VLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITP 310 (347)
T ss_pred EECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999975 57999999999999
Q ss_pred CCCCCCc
Q 020301 320 HIASASK 326 (328)
Q Consensus 320 Hia~~t~ 326 (328)
|+||+|.
T Consensus 311 Hia~~t~ 317 (347)
T PLN02928 311 HVAGVTE 317 (347)
T ss_pred cCCCChH
Confidence 9999985
No 14
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=3.2e-64 Score=505.26 Aligned_cols=283 Identities=36% Similarity=0.540 Sum_probs=248.3
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 020301 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (328)
Q Consensus 17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G 96 (328)
||+++.++.+. ..+.|++.++++... . ..+++++.+.+. ++|+++++..+++++++++++|+| |+|++.|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 47788877653 457777666676532 1 236788888887 799999887778999999999988 999999999
Q ss_pred CCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH
Q 020301 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (328)
Q Consensus 97 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I 176 (328)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..+ .+.|.+|+|||+||||+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999988632 24578999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
|+++|+++ ++|||+|++|||+....... . .+.....+++|++++||+|++|+|+|++|+++||+
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 79999999999974332110 0 11122358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
+.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+||+|.
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~ 283 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTR 283 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHH
Confidence 9999999999999999999999999999999999999999999999988889999999999999999984
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-63 Score=498.97 Aligned_cols=283 Identities=36% Similarity=0.530 Sum_probs=247.5
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (328)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g 94 (328)
|||+++.++.+. ..+.|++. ++++... . ..+++++.+.+. ++|+++++..+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 478888887653 45677665 4455421 1 236788888887 799999887778999999999987 9999999
Q ss_pred ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC
Q 020301 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (328)
Q Consensus 95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G 174 (328)
+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|..+ .+.|.+|.|||+||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999988643 245789999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccc
Q 020301 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (328)
Q Consensus 175 ~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li 254 (328)
+||+.+|+++ ++|||+|++|||+....... ..+ .. ..+++|++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QLG-----VE-LVSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 79999999999975432110 111 12 2389999999999999999999999999
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 255 ~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
|++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|++|.
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~ 284 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTA 284 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchH
Confidence 999999999999999999999999999999999999999999999999988889999999999999999884
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-62 Score=467.47 Aligned_cols=285 Identities=29% Similarity=0.464 Sum_probs=241.3
Q ss_pred eEEEEeCCCCch--HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 16 YRVVSTKPMPGT--RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 16 ~~vlv~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
|||++...-+.+ ...+.+++.++++... +.++++|. .+.+. ++|++++...+++++++++++|+.++|+|++.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 777765443332 2334556666555432 22455554 66676 79999987667899999999984445999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~ 173 (328)
|+|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|. |... ..+++|+|+|+||||+
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~ 154 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT 154 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999884 6432 3468999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (328)
Q Consensus 174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l 253 (328)
|+||+.+|++| ++|||+|++||+++..... . .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 99999999997 7999999999998653210 0 012358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----------C----CCcccCCCeEEcC
Q 020301 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP 319 (328)
Q Consensus 254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTP 319 (328)
++++.|++||+|++|||+|||.+||++||++||++|+|+|||||||++||+. + +|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999952 1 2699999999999
Q ss_pred CCCCCCc
Q 020301 320 HIASASK 326 (328)
Q Consensus 320 Hia~~t~ 326 (328)
|+|++|.
T Consensus 296 Hia~~t~ 302 (330)
T PRK12480 296 HIAFFSD 302 (330)
T ss_pred cccccHH
Confidence 9999985
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=6.2e-62 Score=463.66 Aligned_cols=289 Identities=25% Similarity=0.430 Sum_probs=243.8
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (328)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (328)
++++++++.+.+.. +.+.+.+. +++++..... ..++ |..+.+. ++|+++++..+++++++++++|++++|+|++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 56788888876654 45555443 2333322111 2344 4456666 79999988777899999999998667999999
Q ss_pred cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (328)
Q Consensus 94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~ 173 (328)
|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.| .|.+. ..+++|.|+||||||+
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgIIG~ 154 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVIGT 154 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999988 47542 3478999999999999
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (328)
Q Consensus 174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l 253 (328)
|+||+++|++++++|||+|++||++....... . .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l 217 (332)
T PRK08605 155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL 217 (332)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence 99999999996468999999999986532111 0 112358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--C-CC-----------CcccCCCeEEcC
Q 020301 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M-KP-----------GLSEMKNAIVVP 319 (328)
Q Consensus 254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~-~~-----------~L~~~~nvilTP 319 (328)
++++.|++||+|++|||+|||.++|+++|+++|++|+|+||+||||++||+ + ++ +||++|||++||
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 297 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP 297 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence 999999999999999999999999999999999999999999999999983 2 22 499999999999
Q ss_pred CCCCCCc
Q 020301 320 HIASASK 326 (328)
Q Consensus 320 Hia~~t~ 326 (328)
|+|++|.
T Consensus 298 Hia~~t~ 304 (332)
T PRK08605 298 HIAFYTD 304 (332)
T ss_pred cccccHH
Confidence 9999984
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.3e-61 Score=453.10 Aligned_cols=275 Identities=39% Similarity=0.561 Sum_probs=234.5
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHh-hccCCceEEEccccCCccChhHHHhCCce
Q 020301 33 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIA 111 (328)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~l~~k~i~~~g~G~d~id~~~~~~~gI~ 111 (328)
++..+++.......+...+.++....+.....++.+.....++.+.+.++ |++ |+|+++|+|+|+||+++|++|||+
T Consensus 32 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~ 109 (336)
T KOG0069|consen 32 LRYQGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIR 109 (336)
T ss_pred cccccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCce
Confidence 33334443333333333455556655554445555555667788888777 877 999999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcE
Q 020301 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191 (328)
Q Consensus 112 v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~ 191 (328)
|+|+|+.++.+|||++++++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++|||.
T Consensus 110 V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~ 187 (336)
T KOG0069|consen 110 VANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCV 187 (336)
T ss_pred EeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccce
Confidence 999999999999999999999999999999999999999 687766778999999999999999999999997 799999
Q ss_pred EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 192 V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
+.|++|++....+.+ .| + ....++++++.+||+|++|||+|++|+|+||++.|.+||+|++|||+
T Consensus 188 i~y~~r~~~~~~~~~--~~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069|consen 188 ILYHSRTQLPPEEAY--EY-------Y------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred eeeecccCCchhhHH--Hh-------c------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence 999999765422211 11 0 12469999999999999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 272 aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
|||+++|++++++||++|+|+||+||||++||.+++||++++||++|||||+.|.
T Consensus 253 aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~ 307 (336)
T KOG0069|consen 253 ARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATL 307 (336)
T ss_pred cccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcH
Confidence 9999999999999999999999999999999977889999999999999999984
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.6e-59 Score=450.45 Aligned_cols=256 Identities=28% Similarity=0.408 Sum_probs=220.4
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (328)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~ 95 (328)
|||++...++. ..+.|++. .++...+ ....+.+++ . ++|++++++.+++++++++ .+++ |+|++.++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRL-GEVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhc-CcEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 68999888863 24566654 3666543 234455553 3 7999999887889999985 5766 99999999
Q ss_pred cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (328)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~ 175 (328)
|+||||+++++++||.|+|+||+|+.+||||++++||+++|+. +.+|.|||+||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999851 2479999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh----hh
Q 020301 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (328)
Q Consensus 176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~----t~ 251 (328)
||+.+|+++ ++|||+|++|||..... +. .....+|++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~----~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD----EGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------cc----ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 79999999999854210 00 01246899999999999999999996 99
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
||||++.|++||+|++|||+|||++||++||++||++|++.||+||||++||.++++|+..+| ++||||||+|.
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~ 260 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTL 260 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcH
Confidence 999999999999999999999999999999999999999999999999999988888987765 99999999984
No 20
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.2e-58 Score=435.09 Aligned_cols=272 Identities=20% Similarity=0.236 Sum_probs=220.9
Q ss_pred EEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301 17 RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (328)
Q Consensus 17 ~vlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~ 95 (328)
.+++..+. ....|.+.|++...+.++....+ ++ . .++|+++++.. +.+.++ .++| |+|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a 65 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFALGA 65 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence 45554444 44447888887533333221111 11 1 26888887642 356665 4666 99999999
Q ss_pred cCCccChhH-----HHhCCceEecCCC-CCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 020301 96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (328)
Q Consensus 96 G~d~id~~~-----~~~~gI~v~n~p~-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvg 169 (328)
|+|++|.+. +..+||.|+|+++ .++.+||||++++||+++|++..+.+.+++|.|..+ .+.++.|+|+|
T Consensus 66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg 140 (312)
T PRK15469 66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG 140 (312)
T ss_pred ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence 999998332 3458999999874 689999999999999999999999999999987532 24689999999
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (328)
Q Consensus 170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~ 249 (328)
|||+|+||+.+|+++ ++|||+|++||++.+... +.. ......++++++++||+|++|+|+|++
T Consensus 141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence 999999999999997 799999999998754210 100 111246899999999999999999999
Q ss_pred hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCCCCCc
Q 020301 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~ 326 (328)
|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999864 79999999999999999986
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-58 Score=443.77 Aligned_cols=256 Identities=27% Similarity=0.398 Sum_probs=219.9
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (328)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~ 95 (328)
|||++.+.++.. .+.+++.+ ++.... ....+.+ .+. ++|++++++.+++++++++ .+++ |+|++.++
T Consensus 1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 789999988732 45565543 565433 2223333 344 7999998887889999987 4665 99999999
Q ss_pred cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (328)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~ 175 (328)
|+||||+++++++||.|+|+||+|+.+||||++++||+++|+ .+.++.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999875 13579999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh----hhh
Q 020301 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (328)
Q Consensus 176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~----~t~ 251 (328)
||+.+|+++ ++|||+|++|||..... .+ .....++++++++||+|++|+|+|+ +|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------EG-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc--------------cc-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999996 79999999999854320 00 1124689999999999999999999 599
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (328)
||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||+. |+++||||||+|.
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~ 260 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSL 260 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCH
Confidence 9999999999999999999999999999999999999999999999999999888899986 9999999999984
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-56 Score=420.97 Aligned_cols=227 Identities=23% Similarity=0.366 Sum_probs=198.1
Q ss_pred CccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHH
Q 020301 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (328)
Q Consensus 62 ~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~ 141 (328)
++|+++++.. +...++| |+|++.|+|+|+||+++|+++||.++|. |.++.+||||++++||+++|++..+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence 5787765432 1234565 9999999999999999999988888774 8899999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC
Q 020301 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (328)
Q Consensus 142 ~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
++.+++|.|..+ .+++|+|||+||||+|+||+++|+++ ++|||+|++|||+..+. +..
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~- 161 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS- 161 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence 999999988632 35789999999999999999999996 79999999999975320 110
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 222 ~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||++||++|++.||+||||++
T Consensus 162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 11368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCeEEcCCCCC-CC
Q 020301 302 EPYMKPGLSEMKNAIVVPHIAS-AS 325 (328)
Q Consensus 302 EP~~~~~L~~~~nvilTPHia~-~t 325 (328)
||++++. .+|||++|||++| +|
T Consensus 239 EP~~~~~--~~~nviiTPHi~g~~t 261 (303)
T PRK06436 239 EPIITET--NPDNVILSPHVAGGMS 261 (303)
T ss_pred CCCCccC--CCCCEEECCccccccC
Confidence 9985542 6899999999865 55
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=7.9e-52 Score=361.55 Aligned_cols=177 Identities=42% Similarity=0.571 Sum_probs=151.7
Q ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH
Q 020301 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (328)
Q Consensus 128 l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~ 207 (328)
+++||++.|++..+++.+++|.| |......+++++|+||||||+|+||+++|+++ ++|||+|++|||+..+....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-- 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-- 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence 68999999999999999999998 22223467899999999999999999999997 79999999999998754211
Q ss_pred hhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
.. .+ ....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 76 ~~------------~~-~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 76 DE------------FG-VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HH------------TT-EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cc------------cc-ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 00 01 135799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301 288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (328)
Q Consensus 288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia 322 (328)
+|++.||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999875 5999999999999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=4.3e-34 Score=265.45 Aligned_cols=251 Identities=28% Similarity=0.390 Sum_probs=212.8
Q ss_pred CHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHH
Q 020301 51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130 (328)
Q Consensus 51 ~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~ 130 (328)
+-.|+.+.+-.++-+-+...+..++++-+++++.+ +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++..
T Consensus 62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h 139 (435)
T KOG0067|consen 62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH 139 (435)
T ss_pred chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence 34566654433343334444456788888999887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHcCCCCC-CCCC---cccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 020301 131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (328)
Q Consensus 131 ~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~ 206 (328)
+|.+.|+.....+.+++|.|.+ |... ......++|.++|++|+|++|+.++.+ +++||..|+.||++...-.+.
T Consensus 140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~- 217 (435)
T KOG0067|consen 140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK- 217 (435)
T ss_pred HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh-
Confidence 9999999999999999998843 2111 112346899999999999999999999 599999999999997654432
Q ss_pred HhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL 286 (328)
..+..++.++++++.++|.+++||.+++.++++||...+++|++|++++|++||+++|+++|.+||
T Consensus 218 --------------~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL 283 (435)
T KOG0067|consen 218 --------------SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL 283 (435)
T ss_pred --------------hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence 223445568999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCCCCCCc
Q 020301 287 KQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASK 326 (328)
Q Consensus 287 ~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHia~~t~ 326 (328)
++|++.+++ |. ...||.+.||.++|||.++++.
T Consensus 284 k~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e 318 (435)
T KOG0067|consen 284 KSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE 318 (435)
T ss_pred ccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence 999999998 32 2358999999999999999875
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.90 E-value=1.1e-22 Score=199.35 Aligned_cols=170 Identities=20% Similarity=0.320 Sum_probs=136.7
Q ss_pred ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (328)
Q Consensus 93 ~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi 171 (328)
.++|+..+- ++.....||+|+|+|++++.+++|+++++++++.. ..+|.+ +..+.|++++|+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgVI 260 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVVC 260 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEEE
Confidence 466765542 22223468999999999999999999999999883 344544 247999999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (328)
Q Consensus 172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~ 251 (328)
|+|.||+.+|+++ ++|||+|+++++++....+.. ..| + ...++++++++||+|++|. .|+
T Consensus 261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~~G-----~-~~~~leell~~ADIVI~at----Gt~ 320 (476)
T PTZ00075 261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------MEG-----Y-QVVTLEDVVETADIFVTAT----GNK 320 (476)
T ss_pred CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------hcC-----c-eeccHHHHHhcCCEEEECC----Ccc
Confidence 9999999999996 799999999987754432211 111 1 2358999999999999984 579
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC
Q 020301 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 306 (328)
Q Consensus 252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~ 306 (328)
++|+++.|++||+|++|||++|+ |++.++++|+++. ++||++.||..+
T Consensus 321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 99999999999999999999999 7899999998753 799999999644
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.85 E-value=1.5e-20 Score=175.80 Aligned_cols=203 Identities=19% Similarity=0.209 Sum_probs=147.2
Q ss_pred HHHHHHhCCCeEEEecCCC--C---CCCHHHHHHH-hcCCccEEEecCC----------------CCccHHHHHHhhccC
Q 020301 29 WINLLIEQDCRVEICTQKK--T---ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG 86 (328)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~--~---~~~~e~~~~~-~~~~~d~li~~~~----------------~~~~~~~l~~~~~l~ 86 (328)
..+.|.+.|+.+..+-.+. . ....+++.+. +. ++|++|.-.+ .++++++++++|.
T Consensus 16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~-- 92 (287)
T TIGR02853 16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG-- 92 (287)
T ss_pred HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC--
Confidence 4577888898887654321 1 0112222222 33 6888875321 2346788888762
Q ss_pred CceEEEccccCCccChh-HHHhCCceEe------cCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccc
Q 020301 87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159 (328)
Q Consensus 87 ~k~i~~~g~G~d~id~~-~~~~~gI~v~------n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~ 159 (328)
++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++.. .
T Consensus 93 ---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~ 145 (287)
T TIGR02853 93 ---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T 145 (287)
T ss_pred ---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence 44456788888888 9999999999 999999999999999887732 1
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
+.+++|++++|+|+|.||+.+|++| ++||++|++++|+..... . ....+... ....+++++++++|+
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~-~--------~~~~g~~~---~~~~~l~~~l~~aDi 212 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLA-R--------ITEMGLIP---FPLNKLEEKVAEIDI 212 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHCCCee---ecHHHHHHHhccCCE
Confidence 2378999999999999999999997 799999999999865321 1 11112111 123467889999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-ccCH
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDE 279 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-~vde 279 (328)
|++|+|.+ +++++.++.||+++++||++..+ -+|-
T Consensus 213 Vint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 213 VINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred EEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 99999953 78899999999999999998743 3444
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.72 E-value=4.7e-17 Score=135.26 Aligned_cols=101 Identities=31% Similarity=0.428 Sum_probs=86.1
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 020301 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (328)
Q Consensus 18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~ 97 (328)
||+++++++. ..+.|++ ++++++.. ..+.+++.+.+. ++|++++...+++++++++.+|+| |+|++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 6888988764 4788888 66887764 346788998887 799999988777999999999987 9999999999
Q ss_pred CccChhHHHhCCceEecCCCCCCchHHHHH
Q 020301 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (328)
Q Consensus 98 d~id~~~~~~~gI~v~n~p~~~~~~vAE~a 127 (328)
|+||+++|+++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.72 E-value=3.9e-16 Score=146.79 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=142.1
Q ss_pred HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCccEEEecCC----------------CCccHHHHHHhh
Q 020301 29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS 83 (328)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~---------~~e~~~~~~~~~~d~li~~~~----------------~~~~~~~l~~~~ 83 (328)
..+.|.+.|+++.+...++... +.++ .+. ++|+++.-.+ ..++++.++.+|
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 4577888899987754443221 2222 333 6898875421 123578899998
Q ss_pred ccCCceEEEccccCCccChhHHHhCCceEecCCCC------CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCc
Q 020301 84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157 (328)
Q Consensus 84 ~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~------~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~ 157 (328)
+. .. ...|.+.++++ +.+.++||.+.+.... |+.++||.++.+++. +
T Consensus 93 ~~--~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~-------------------- 145 (296)
T PRK08306 93 EH--CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H-------------------- 145 (296)
T ss_pred CC--CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h--------------------
Confidence 75 43 33688999988 8899999999987764 888999997776441 0
Q ss_pred ccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 158 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
.+..+.|++++|+|+|.+|+.+++.| +++|++|.++|+++.... .. +..+.. .....++.+.++++
T Consensus 146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~--~~-------~~~G~~---~~~~~~l~~~l~~a 211 (296)
T PRK08306 146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLA--RI-------TEMGLS---PFHLSELAEEVGKI 211 (296)
T ss_pred -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHH--HH-------HHcCCe---eecHHHHHHHhCCC
Confidence 12467899999999999999999997 799999999999865421 11 111221 11234678899999
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+|+.++| ..+++++.++.|++++++||++-
T Consensus 212 DiVI~t~p-----~~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 212 DIIFNTIP-----ALVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CEEEECCC-----hhhhhHHHHHcCCCCcEEEEEcc
Confidence 99999998 35788999999999999999974
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.71 E-value=2.5e-17 Score=161.24 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=102.9
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+.|++++|+|+|.||+.+|+++ ++|||+|+++++++....+.. ..|. ...+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~---------~~G~------~vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQAL---------MEGY------QVLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHH---------hcCC------eeccHHHHHhhCCEE
Confidence 347999999999999999999996 799999999998765422211 1121 124789999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCccEEEEeCCCCCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR-G~~vde~aL~~a--L~~g~i~gaalDV~~~EP 303 (328)
+. +..|+++++++.|+.||+|++|+|++| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 314 I~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 97 467899999999999999999999999 679999999998 9999888 9999999864
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.67 E-value=2.1e-15 Score=146.55 Aligned_cols=121 Identities=27% Similarity=0.324 Sum_probs=101.7
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+.|++++|+|+|.||+.+|+++ +++|++|+++|+++....+. ...| + ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A---------~~~G-----~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEA---------AMDG-----F-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHH---------HhcC-----C-EeCCHHHHHhcCCEE
Confidence 358999999999999999999996 79999999998876543221 1112 1 234778999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
+.+. .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus 255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 8753 4688999999999999999999999998 9999999999888888999999874
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.55 E-value=1.2e-14 Score=136.32 Aligned_cols=97 Identities=26% Similarity=0.330 Sum_probs=77.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..|.||||||||+|+||+++|++| ++||++|++|++..... +. +...| + ...+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~-~v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----F-EVMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----C-EECCHHHHHhcCCEE
Confidence 479999999999999999999997 79999999998653221 10 11112 2 235899999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
++|+|+ ++|+++++++.|..||+|++|+-. .|-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f~-hgf 108 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLFS-HGF 108 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC-CCc
Confidence 999996 788999999999999999977643 443
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.53 E-value=6e-13 Score=130.19 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=111.1
Q ss_pred ccccCCcc-ChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301 93 MAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (328)
Q Consensus 93 ~g~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi 171 (328)
.++|+..+ ......+.+++|.|.+..+..+.-|...+.-.+....+ .+. .+..+.|++++|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlVi 218 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVVA 218 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEEE
Confidence 56777654 22323457899999999888775553332222211111 111 1235899999999
Q ss_pred ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (328)
Q Consensus 172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~ 251 (328)
|+|.||+.+|+++ +++|++|+++|+++....+.. ..| + ...+++++++.+|+|+.+. .+.
T Consensus 219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~~G-----~-~v~~l~eal~~aDVVI~aT----G~~ 278 (425)
T PRK05476 219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------MDG-----F-RVMTMEEAAELGDIFVTAT----GNK 278 (425)
T ss_pred CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------hcC-----C-EecCHHHHHhCCCEEEECC----CCH
Confidence 9999999999996 799999999998875432211 112 1 2347899999999998764 457
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301 252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (328)
Q Consensus 252 ~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~ 284 (328)
++|+.+.|..||+|++++|++|.+. +|.++|.+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 8899999999999999999999887 78888764
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.42 E-value=1.2e-12 Score=111.47 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=76.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+.||++.|+|||.+|+.+|+.| +++|++|++++..|....+...+.| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 568999999999999999999997 7999999999999877666544433 235899999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~ 284 (328)
+.+.- .++++..+.|.+||+|+++.|++.-+. +|-+.|.+
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 87643 478899999999999999999987554 66666554
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.30 E-value=7.9e-12 Score=107.50 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=85.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++|||||+|.||+.+|++| ..-|.+|++||++++.. +++. ..+ .....++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALA--------EAG-----AEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHH--------HTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhH--------Hhh-----hhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 47799999999987542 2211 112 3345799999999999999999
Q ss_pred CChhhhcccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 246 lt~~t~~li~-~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
..++++.++. .+.++.+++|.++||++....-....+.+.+.+.. ...+|
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd 117 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD 117 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence 8888887763 23788899999999999999999999999998654 33444
No 35
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.25 E-value=4e-11 Score=111.46 Aligned_cols=113 Identities=23% Similarity=0.186 Sum_probs=95.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
.+||+||+|.||..+|++| ..-|..|.+|||++.+..+. +...| .....+..|+.++||+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 57799999999998653221 11222 2345688899999999999999
Q ss_pred CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
..++.+.++. ...++.||||+++||.+.-+.-....+.+++++..+.
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence 9999998885 6799999999999999999999999999999987654
No 36
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.25 E-value=3e-11 Score=113.23 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=88.5
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl 246 (328)
+|||||+|.||+.+|+.+ ...|.+|++||+++... +.. ...+. ....+.++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g~-----~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAGA-----VTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCCC-----cccCCHHHHHhcCCEEEEecCC
Confidence 489999999999999997 57899999999987432 211 11121 2345888999999999999998
Q ss_pred Chhhhccc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 247 t~~t~~li-~-~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+++++.++ + ...+..+++|+++||++++...+.++|.+.+++..+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 88887765 3 3467889999999999999998889999999886433
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.23 E-value=4.1e-11 Score=112.48 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=93.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++|||||+|.||+.+|+.+ ...|.+|++||+++... +.. ...+ .....++++++++||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEV--------IAAG-----AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 4799999999999999997 57899999999987542 111 1112 1234578999999999999999
Q ss_pred CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
.+.+++.++. ...+..+++|.++||+++......+++.+.+.+..+...---|+-.+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8888887764 346788999999999999998888899999987654432223444333
No 38
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.22 E-value=3.3e-10 Score=110.74 Aligned_cols=105 Identities=25% Similarity=0.357 Sum_probs=83.6
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
+..+.|++++|+|+|.||+.+|+++ +++|++|+++|+++..... +...|. ...++++.++.+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~---------A~~~G~------~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQ---------AAMEGY------EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHH---------HHhcCC------EEccHHHHHcCCCE
Confidence 3568999999999999999999996 8999999999987654221 111221 22457888999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~ 284 (328)
|+.+.. +.++++.+.|..||+|++++|++++++ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998743 567888999999999999999999887 88888764
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.16 E-value=1.5e-10 Score=109.06 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=90.0
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++|||||+|.||..+|+.| ...|.+|++||+++... ++.. ..+ .....+..+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALV--------DKG-----ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CcccCCHHHHHhcCCEEEEecC
Confidence 3799999999999999998 46799999999987542 2211 112 1234688899999999999999
Q ss_pred CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
....++.++. ...++.+++|.++||++++.....+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8777777764 3467789999999999999999999999999987654
No 40
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.15 E-value=2e-10 Score=108.20 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=90.5
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (328)
+|||||+|.||+.+|+.| ...|.+|++||++++.. +.. ...+ .....++++++++ +|+|++|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~--------~~~g-----~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVA--------GKLG-----ITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH--------HHCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence 699999999999999998 47899999999986532 111 1112 2234688898877 6999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
+|..+.++.++ +..+..+++|.++||+++....+...+.+.+++..+. .+|
T Consensus 67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 99877888887 4677889999999999999999999999999876543 366
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.11 E-value=2.1e-10 Score=108.99 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=84.8
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..|.|++|||||+|+||+++|+.| +.+|++|+++++......+. ++..| +. ..+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Ce-eCCHHHHHhcCCEE
Confidence 468999999999999999999997 68999999887764332111 11112 11 24889999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (328)
++++|.+.. ..+++++.+..|++|++| -.+.|- +...+. ..-+..+||+-..|.
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~--~i~~~~------~~p~~~~~Vi~vaPn 131 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGF--NIHFGQ------IVPPADVDVIMVAPK 131 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCC--Chhhce------eccCCCCcEEEeCCC
Confidence 999996655 777778888999999988 555552 111111 112455677777774
No 42
>PLN02712 arogenate dehydrogenase
Probab=99.07 E-value=8.5e-10 Score=114.26 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=86.6
Q ss_pred cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cC
Q 020301 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (328)
Q Consensus 159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a 237 (328)
.++++.+++|||||+|.||+.+|+.+ +.+|.+|++||++... +. +...|. ....++++++. .+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~--------a~~~Gv-----~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DE--------AQKLGV-----SYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HH--------HHHcCC-----eEeCCHHHHHhcCC
Confidence 35678999999999999999999997 6889999999997532 11 111121 23468888876 59
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
|+|++|+| ...+..++.+-.+..||+|++++|++.++-...+++.+.+..|
T Consensus 427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 99999999 4778888877666679999999999998855555666555543
No 43
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.03 E-value=1.6e-09 Score=102.17 Aligned_cols=113 Identities=22% Similarity=0.290 Sum_probs=89.8
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (328)
+|||||+|.||+.+|+.| ...|.+|.+||+++... ++. .+.| .....+++++++. +|+|+++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EAL--------AEEG-----ATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHH--------HHCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 57899999999987542 111 1112 2234588888876 6999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
+|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+. .+|
T Consensus 67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 99877888877 4677889999999999999999999999999887654 346
No 44
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.98 E-value=1.9e-09 Score=101.43 Aligned_cols=104 Identities=30% Similarity=0.417 Sum_probs=88.4
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
-+.||++.|.|||.+|+-+|+++ +++|++|++++..+-..++...+.| ++.++++..+.+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence 48999999999999999999996 8999999999988877666544433 4568999999999998
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH 285 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~a 285 (328)
.+ ..++++|..+.|..||+|+++-|.+.-.+ ||-++|.+.
T Consensus 270 T~----TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 270 TA----TGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL 310 (420)
T ss_pred Ec----cCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence 76 35689999999999999999999997776 777777643
No 45
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.95 E-value=4.6e-09 Score=104.97 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=98.7
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (328)
+||+||+|.||+.+|++|+ .-|.+|.+|||++.+. +++.+.. ...|... .....+++|+.+. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 6999999999999999985 6799999999987643 2222110 0012111 1134688888876 9999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
+|..+.++.++ ...+..+++|.++||++....-+...+.+.+++..+.-...=|.-.++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999999988 568889999999999999999999999999998877655555665554
No 46
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.92 E-value=4.1e-08 Score=91.37 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=108.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (328)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~ 102 (328)
+..++.|.+++....++ ..+++++.+.+. +..|+++++.+ ..+++. +++.++-. |= +|.+--
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (285)
T PRK14189 55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV 124 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence 34556788887765543 346777776553 25679999864 345543 44444322 21 111110
Q ss_pred hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH-HHHHH
Q 020301 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (328)
Q Consensus 103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I-G~~vA 181 (328)
...|-...+.++ ....++.-++.++ ++ .+.++.||++.|||.|.+ |+.+|
T Consensus 125 ---~n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla 175 (285)
T PRK14189 125 ---ANAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA 175 (285)
T ss_pred ---hhhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 011111122222 2344555444322 11 235799999999999999 99999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+| ...|++|+.++.. ..++.+.+++||+|+.++| +.++|+. +.
T Consensus 176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ 219 (285)
T PRK14189 176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM 219 (285)
T ss_pred HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence 997 6899999987532 1478899999999999999 4578887 55
Q ss_pred CCCCcEEEEcCCCc
Q 020301 262 MKKEAILVNCSRGP 275 (328)
Q Consensus 262 mk~ga~lIN~aRG~ 275 (328)
+|+|+++||++--.
T Consensus 220 ik~gavVIDVGin~ 233 (285)
T PRK14189 220 VKPGATVIDVGMNR 233 (285)
T ss_pred cCCCCEEEEccccc
Confidence 78999999998544
No 47
>PLN02256 arogenate dehydrogenase
Probab=98.91 E-value=5.5e-09 Score=98.73 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=80.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~ 241 (328)
-.++++||||+|.||+.+|+.+ +..|.+|++||++.... .. ...|. ....++++++ ..+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~---~a-------~~~gv-----~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD---IA-------AELGV-----SFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH---HH-------HHcCC-----eeeCCHHHHhhCCCCEEE
Confidence 4667899999999999999997 67899999999985321 11 11121 1245788876 4799999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+|+|. ..+..++.+-....+++++++++++.+.-+..+++.+.+..
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 99994 46777775543667899999999999765556666666644
No 48
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.89 E-value=6.6e-09 Score=97.69 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=87.6
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl 246 (328)
+|||||+|+||+.+|+.| ...|.+|.+||+++.. +.. ...| .....+..++.++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999997 4678999999987532 221 1112 22346788999999999999998
Q ss_pred ChhhhccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 247 t~~t~~li~~--~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
.++.+..+.. ..++.+++|.++|+++....-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 8787776632 357778999999999998888888899998875433 455
No 49
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.86 E-value=1e-08 Score=97.19 Aligned_cols=97 Identities=24% Similarity=0.246 Sum_probs=69.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
|.||+|||||+|+||+++|+.| +.+|++|+++++......+.. ...|. ...+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a--------~~~Gv------~~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKA--------TEDGF------KVGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHH--------HHCCC------EECCHHHHHhcCCEEEE
Confidence 5789999999999999999997 688999887665433222211 11121 12468899999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
++|... ....+.++....|+++. +|.++-|--
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence 999432 34455566778898886 788887753
No 50
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.86 E-value=7e-08 Score=90.42 Aligned_cols=168 Identities=19% Similarity=0.212 Sum_probs=105.6
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++++.+.+. +..|+++++.+ ..+++. +++...-. |=|- |+....+-
T Consensus 57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g 129 (301)
T PRK14194 57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVG 129 (301)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhh
Confidence 3445688776655543 346777776653 25689999864 345543 34433222 2110 22111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~ 182 (328)
.. ..+.++ ....++.-++.++- + .+.++.||+++|||.| .+|+.+|.
T Consensus 130 ~l------~~~~~~-~~PcTp~aii~lL~----~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA~ 177 (301)
T PRK14194 130 GL------SQGRDV-LTPCTPSGCLRLLE----D---------------------TCGDLTGKHAVVIGRSNIVGKPMAA 177 (301)
T ss_pred HH------hcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCccHHHHHH
Confidence 11 111222 33445555443321 1 2358999999999996 99999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|++|.+|++.. .++.++.++||+|+++++.. +++.... +
T Consensus 178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i 221 (301)
T PRK14194 178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L 221 (301)
T ss_pred HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence 98 46799999997642 36889999999999999853 4555554 8
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 222 k~GaiVIDvgin 233 (301)
T PRK14194 222 KPGAVVIDVGIN 233 (301)
T ss_pred cCCcEEEEeccc
Confidence 999999999843
No 51
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.86 E-value=1.4e-08 Score=101.20 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=97.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l 242 (328)
.+|||||+|.||+.+|++| ..-|.+|.+|||+++... ++.+. ....+. ......+++|+++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~----~~~~g~---~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK----AKEGNT---RVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh----hhhcCC---cceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 477999999999876432 11110 001121 1123468999887 4899999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
++|....++.++ ++.+..+++|.++||.+.+..-|...+.+.+++..+.-...=|.-.++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888999988 567888999999999999999999999999998777655444555443
No 52
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.84 E-value=2.1e-08 Score=94.54 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=83.8
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l~ 243 (328)
+|||||+|.||..+|+.| ...|.+|.+||+++... ++. .+.+.. ...+++++ +.++|+|+++
T Consensus 2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l--------~~~g~~-----~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAM--------KEDRTT-----GVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHcCCc-----ccCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 46799999999987542 221 111211 12355554 4568999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 9976 778877 5677888999999999999888999999988876554
No 53
>PLN02858 fructose-bisphosphate aldolase
Probab=98.83 E-value=1.4e-08 Score=112.54 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=89.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
.++|||||+|.||..+|++| ...|.+|++||+++... +.+ ...+. ....+..+++++||+|++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l--------~~~Ga-----~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRF--------ENAGG-----LAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHcCC-----eecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 57899999999987542 211 11121 12468899999999999999
Q ss_pred CCChhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 245 plt~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
|..++++.++ +...+..+++|.++||++....-..+.+.+.+++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 9888888887 3567889999999999999998888889998887
No 54
>PLN02858 fructose-bisphosphate aldolase
Probab=98.82 E-value=1.7e-08 Score=111.90 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=94.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
..++||+||+|.||..+|++|+ .-|.+|.+||+++... +++ ...| .....+..|+.++||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l--------~~~G-----a~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLM-EKF--------CELG-----GHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEE
Confidence 3568999999999999999984 6799999999986542 221 1112 23357899999999999999
Q ss_pred CCCChhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeC
Q 020301 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (328)
Q Consensus 244 ~plt~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV 298 (328)
+|..+..+.++ ....+..+++|.++|+++....-....+.+.+++..-....+|.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 99988888886 35678889999999999999988899999999875411235663
No 55
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.78 E-value=2.5e-08 Score=96.77 Aligned_cols=103 Identities=19% Similarity=0.362 Sum_probs=75.3
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
.+.++++.|+|.|.+|+.+++.+ +.+|++|.++|+++.. .+.....++.. .........++.+.++++|+|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~------v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGR------IHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCce------eEeccCCHHHHHHHHccCCEEE
Confidence 36788999999999999999996 7999999999998643 22211111100 0000111235778899999999
Q ss_pred EcCCCC-hhhhccccHHHHhcCCCCcEEEEcC
Q 020301 242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 242 l~~plt-~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.+++.+ ..+..+++++.++.||+++++||++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 998653 3456789999999999999999986
No 56
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.77 E-value=1.9e-08 Score=94.24 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=83.9
Q ss_pred EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (328)
Q Consensus 170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~ 249 (328)
|||+|.||..+|+.| ...|.+|.+|||++... +.. ...+ .....++.+++++||+|++|+|...+
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l--------~~~g-----~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEA--------VAAG-----AQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 47799999999987542 111 1112 12345889999999999999997777
Q ss_pred hhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 250 t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
++.++. ...+..+++|.++||++....-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 777763 4567789999999999977766667788888764433 466
No 57
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.77 E-value=2.3e-08 Score=94.57 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=67.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+++|||||+|.+|+.+|++| ...|.+|.+|+|+.. .++++++++||+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 457899999999999999997 578999999998642 4678899999999999
Q ss_pred CCCChhhhccccHHHHh-cCCCCcEEEEcCCCcc
Q 020301 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~ 276 (328)
+|. +..+.+++. ... .+++++++|++++|-.
T Consensus 55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD 86 (308)
T ss_pred CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence 996 577777743 222 4789999999988543
No 58
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.77 E-value=7.8e-08 Score=91.43 Aligned_cols=130 Identities=17% Similarity=0.208 Sum_probs=88.8
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCC----CccccccCCHHHHhhcCCE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 239 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi 239 (328)
++|||||.|.||..+|..++ ..|++|..||+++.... ........+.+.+.+.. ........++++.++.||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999999999999999975 78999999999875321 11111111111112211 1122345689999999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~ 299 (328)
|+-++|.+.+.+.-+-++.-+.++++++|- ++.. -+...++.++++. .=+..++=.|
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~-p~R~~g~Hff 143 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIA-SSTS-GLLPTDFYARATH-PERCVVGHPF 143 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCC-cccEEEEecC
Confidence 999999999999888888889999999554 4333 3567778887754 2233444333
No 59
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.77 E-value=2.4e-08 Score=92.12 Aligned_cols=95 Identities=23% Similarity=0.438 Sum_probs=79.9
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
-+.||.+.|.|||.+|+..|+.| ++||++|++....+-..++...+.| .+++++|++++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence 37899999999999999999997 8999999999887766555433322 4579999999999998
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
.+ ...+.+|..+.|++||.++++.|++.-.+
T Consensus 275 Tt----TGc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TT----TGCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred Ec----cCCcchhhHHHHHhCcCCcEEeccccccc
Confidence 65 45688999999999999999999987554
No 60
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.76 E-value=1.1e-07 Score=89.38 Aligned_cols=118 Identities=25% Similarity=0.253 Sum_probs=79.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC-------cc-ccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~ 235 (328)
++|||||.|.||..+|+.++ ..|.+|++||+++..... +.....-+.+.+.+... .+ .....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 57999999999999999984 779999999998754211 00000000011111100 00 1112344 5689
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc
Q 020301 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~ 288 (328)
.||+|+.|+|..++.+..+-.+..+.++++++|+ |+|.- ....+.+.+..
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 9999999999999998888787778899999987 77664 45566666653
No 61
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.76 E-value=2.5e-08 Score=84.81 Aligned_cols=94 Identities=31% Similarity=0.333 Sum_probs=64.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
|.||||+|||||..|++-|..| +..|.+|++-.+..++..+ .++++|. ...+.+|+.++||+|.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~--------~A~~~Gf------~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWE--------KAKADGF------EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHH--------HHHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHH--------HHHHCCC------eeccHHHHHhhCCEEEE
Confidence 6799999999999999999998 7889999988776553211 1233343 34689999999999999
Q ss_pred cCCCChhh-hccccHHHHhcCCCCcEEEEcCCC
Q 020301 243 HPVLDKTT-YHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 243 ~~plt~~t-~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
.+| ++. ..++.++....||+|+.|+ .+.|
T Consensus 67 L~P--D~~q~~vy~~~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 67 LLP--DEVQPEVYEEEIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp -S---HHHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred eCC--hHHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence 999 443 4556688888999999765 3444
No 62
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.76 E-value=6.1e-08 Score=96.05 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=91.8
Q ss_pred EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
+++||| +|.||+.+|+.| +..|.+|.+||+++... .+.. ...+. ....++++.+++||+|++|+|
T Consensus 2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a-------~~~gv-----~~~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVA-------KELGV-----EYANDNIDAAKDADIVIISVP 67 (437)
T ss_pred EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHH-------HHcCC-----eeccCHHHHhccCCEEEEecC
Confidence 799998 899999999997 67899999999876431 1111 11121 123578888999999999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCC
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI 321 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHi 321 (328)
. ..+..++ ++....+++++++++++.......+++.+.+..|. .+...-|. +..+++.-..+++||+-
T Consensus 68 ~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 68 I-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred H-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 5 4556655 55667789999999999865455556665554321 12222343 33467777889999974
No 63
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.75 E-value=1.5e-07 Score=91.10 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=83.3
Q ss_pred CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.-.||+|||+ |.||+++|+.|.+.+|.+|++||+... ...++++.+++||+|++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil 57 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF 57 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence 4568999999 999999999985346999999998521 12467888999999999
Q ss_pred cCCCChhhhccccHH--HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC---CCCcccCCCeEE
Q 020301 243 HPVLDKTTYHLINKE--RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIV 317 (328)
Q Consensus 243 ~~plt~~t~~li~~~--~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvil 317 (328)
|+|- ..+..++.+- ....+|+++++++++.-. ....+++.... .++...-|.. .+.+++-.++++
T Consensus 58 avPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~il 127 (370)
T PRK08818 58 SAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVV 127 (370)
T ss_pred eCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEE
Confidence 9993 4455555321 123489999999998754 22333332211 1233335542 246777788999
Q ss_pred cCC
Q 020301 318 VPH 320 (328)
Q Consensus 318 TPH 320 (328)
||.
T Consensus 128 tp~ 130 (370)
T PRK08818 128 CEA 130 (370)
T ss_pred eCC
Confidence 986
No 64
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.75 E-value=5.6e-08 Score=96.91 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=90.8
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hcCCEEEEcC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLHP 244 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~ 244 (328)
|||||+|.||+.+|++|+ .-|.+|.+|||++... ++..+.+ ..+ .......+++++. +++|+|++++
T Consensus 2 IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~-~~l~~~~-----~~g---~~~~~~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKT-DEFLAEH-----AKG---KKIVGAYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred EEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHhhc-----cCC---CCceecCCHHHHHhhcCCCCEEEEEC
Confidence 899999999999999984 6799999999987643 2221110 001 0112235677766 4689999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E 302 (328)
|..+.+..++ +..+..+++|.++||++....-|...+.+.+++..+.-...=|.-.+
T Consensus 72 ~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 72 KAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred CCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 9878888877 56778899999999999988889889999998766654433344443
No 65
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.74 E-value=1.3e-08 Score=99.37 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=65.6
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC------chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 234 (328)
..|.||||+|||||++|+.-|..| +..|.+|.+--|. ..... .+..+| + ...+++|++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~---------kA~~dG-----F-~v~~~~Ea~ 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWR---------KATENG-----F-KVGTYEELI 95 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHH---------HHHhcC-----C-ccCCHHHHH
Confidence 569999999999999999544443 3444444421111 11110 011122 2 346899999
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
++||+|++.+|.+ + ++.++++.+..||+|++|. .|.|--
T Consensus 96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFn 134 (487)
T PRK05225 96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFN 134 (487)
T ss_pred HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCce
Confidence 9999999999988 4 7778899999999999765 455543
No 66
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.74 E-value=1.6e-06 Score=86.96 Aligned_cols=225 Identities=20% Similarity=0.211 Sum_probs=120.5
Q ss_pred HHHHHhCCCeEEEecCC--CCCCCHHHHHHH---h-----cCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 020301 30 INLLIEQDCRVEICTQK--KTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN 99 (328)
Q Consensus 30 ~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~---~-----~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~ 99 (328)
.+.|.+.|+++.+.... ...+++++..+. + -+++|.|+- ...+ +.+.++.++. |-.+++...-..|.
T Consensus 22 v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~~-g~tli~~l~p~~n~ 98 (511)
T TIGR00561 22 VQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELPA-GKALVSFIWPAQNP 98 (511)
T ss_pred HHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcCC-CCEEEEEcCccCCH
Confidence 56677778887664431 223455555431 0 024666652 2222 3455666654 32344443333333
Q ss_pred cChhHHHhCCceEecCCCCC--C--------chHHHHHHHHHHHHHhcHHHHHHHHHcCCC-CCCCCCcccccccCCCEE
Q 020301 100 VDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLY-DGWLPNLFVGNLLKGQTV 168 (328)
Q Consensus 100 id~~~~~~~gI~v~n~p~~~--~--------~~vAE~al~~~L~~~R~~~~~~~~~~~g~w-~~w~~~~~~~~~l~g~tv 168 (328)
=-++++.++||.+..-.-.- + .++|+.+= .|-.....+.+ |.+ .+... .. ..+.+.++
T Consensus 99 ~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~l--gr~~~g~~t--aa-g~vp~akV 167 (511)
T TIGR00561 99 ELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEF--GRFFTGQIT--AA-GKVPPAKV 167 (511)
T ss_pred HHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHh--hhhcCCcee--cC-CCCCCCEE
Confidence 34567788888876622111 1 12333321 11111111111 111 00000 01 14567899
Q ss_pred EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh-----hcCCCCCccccccCC----------HHHH
Q 020301 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS----------MDEV 233 (328)
Q Consensus 169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------l~el 233 (328)
.|+|+|.+|...++.+ +++|++|.++|++.... + ....++... .+++....++....+ +.+.
T Consensus 168 lViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 168 LVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-E-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 9999999999999985 79999999999987532 2 222222111 000110111111111 4566
Q ss_pred hhcCCEEEEcC--CCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 234 LREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 234 l~~aDiV~l~~--plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
++++|+|+.++ |.. ....++.++.++.||||+++||+|
T Consensus 245 ~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 245 AKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred hCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEee
Confidence 78899998776 322 234789999999999999999996
No 67
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=3.4e-07 Score=85.92 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=104.3
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+++....+. ..+++|+.+.+.. +.|+++++.+ ..+++ .+++..+-. |=|- |+..+.+
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~- 127 (296)
T PRK14188 56 QTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNA- 127 (296)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhH-
Confidence 3456688776655433 3577777766541 4579999864 34444 344433222 1110 1111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe-cCHHHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG-~G~IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++= . .+.++.||+++||| .|.+|+.+|.
T Consensus 128 -----g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA~ 176 (296)
T PRK14188 128 -----GRLATGETA-LVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMAQ 176 (296)
T ss_pred -----HHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHHH
Confidence 111112222 34455555443321 1 12479999999999 9999999999
Q ss_pred HHHhcCCcEEEEEc-CCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 183 MMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 183 ~l~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
+|. .-|+.|.+|+ ++ .++++++++||+|+++++... ++....
T Consensus 177 ~L~-~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~--- 219 (296)
T PRK14188 177 LLL-AANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW--- 219 (296)
T ss_pred HHH-hCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence 984 6799999995 32 257889999999999999543 454443
Q ss_pred CCCCcEEEEcCCCc
Q 020301 262 MKKEAILVNCSRGP 275 (328)
Q Consensus 262 mk~ga~lIN~aRG~ 275 (328)
+|+|+++||++--.
T Consensus 220 lk~GavVIDvGin~ 233 (296)
T PRK14188 220 IKPGATVIDVGINR 233 (296)
T ss_pred ecCCCEEEEcCCcc
Confidence 89999999997533
No 68
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.73 E-value=3e-07 Score=81.79 Aligned_cols=110 Identities=20% Similarity=0.337 Sum_probs=79.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi 239 (328)
.++.|++++|+|+|++|+.+|+.| ..+|++|+++|++... .+++.+.| + .. ..+.++++. +||+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~-~~~~~~~~-------g-----~~-~v~~~~l~~~~~Dv 88 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEA-VARAAELF-------G-----AT-VVAPEEIYSVDADV 88 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----CE-EEcchhhccccCCE
Confidence 578999999999999999999997 6899999999988643 22221111 1 11 123456664 7999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
++.|.. .++|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus 89 ~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 89 FAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred EEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 986655 4689999999997 55788888888776 4455566665443
No 69
>PLN02712 arogenate dehydrogenase
Probab=98.72 E-value=4.2e-08 Score=101.82 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=76.7
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV 240 (328)
.-+.++|||||+|.||+.+|+.| +.+|.+|++||++..... . ...| .....++++++ .+||+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A-------~~~G-----v~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---A-------RSLG-----VSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---H-------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence 34456899999999999999997 688999999999743211 1 1112 12245788866 569999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
++|+|. ..+..++.+-.+..||+|++++|++.-...--+++.+.+.
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 999994 5778888665556799999999997544222234444443
No 70
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.71 E-value=5.1e-07 Score=84.09 Aligned_cols=169 Identities=19% Similarity=0.304 Sum_probs=106.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (328)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~ 102 (328)
+.-++.|.+.+....++ ..+++++.+.+. ++.|+++++.+ ..+++. +++..+-. |=|- |+....+
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 127 (284)
T PRK14179 55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence 34456688887665543 346777776553 15589999864 344443 33333222 2110 1111111
Q ss_pred hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec-CHHHHHHH
Q 020301 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (328)
Q Consensus 103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~-G~IG~~vA 181 (328)
|-...+.++ ....++.-++.++- + .+.++.||+++|||. |.+|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 128 ------GHLWSGRPV-MIPCTPAGIMEMFR----E---------------------YNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred ------HHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence 111122333 34556665543332 1 235799999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+| ..-|+.|..|... ..++.+.+++||+|+.+++.. +++..+.
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~~----~~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGRG----HFVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCcc----ccCCHHH---
Confidence 998 4679999998321 137889999999999999843 3465544
Q ss_pred CCCCcEEEEcCCC
Q 020301 262 MKKEAILVNCSRG 274 (328)
Q Consensus 262 mk~ga~lIN~aRG 274 (328)
+|+|+++||++--
T Consensus 220 ik~GavVIDvgin 232 (284)
T PRK14179 220 VKEGAVVIDVGMN 232 (284)
T ss_pred ccCCcEEEEecce
Confidence 8999999999743
No 71
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.70 E-value=6.5e-07 Score=83.50 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=106.8
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....+. ..+++++.+.+. ++.|+++++.+ ..+++. +++..+-. |=|- |+....+
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~- 127 (286)
T PRK14175 56 AAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI- 127 (286)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch-
Confidence 3456688877665543 346777776553 15679999864 345543 44444322 2110 1111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++- + .+.++.||++.|||.|. +|+.+|.
T Consensus 128 -----g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~l~Gk~vvVIGrs~~VG~pla~ 176 (286)
T PRK14175 128 -----GKLYIDEQT-FVPCTPLGIMEILK----H---------------------ADIDLEGKNAVVIGRSHIVGQPVSK 176 (286)
T ss_pred -----HhHhcCCCC-CCCCcHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCchhHHHHHH
Confidence 111112232 33445554443332 0 13479999999999999 9999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ...|++|+.++++. .++.+.+++||+|+.+++. .++|..+. +
T Consensus 177 lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---v 220 (286)
T PRK14175 177 LL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---V 220 (286)
T ss_pred HH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---c
Confidence 97 68999999887532 3678899999999999984 44688765 5
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 221 k~gavVIDvGi~ 232 (286)
T PRK14175 221 KEGAVIIDVGNT 232 (286)
T ss_pred CCCcEEEEcCCC
Confidence 899999999853
No 72
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.70 E-value=1.8e-07 Score=87.60 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=83.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh---hhhhhhcCCCCCc--------cccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLKANGEQPV--------TWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++ ..|.+|++||+++... +..... ......+.+.... ......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999999999999999974 6799999999986542 111100 0000000110000 112235788999
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalDV~ 299 (328)
+.||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.- +...+.+.++. .-...++..|
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~---~~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM---SPTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEEecC
Confidence 9999999999987776665555666778999877 788774 44566666643 2334566666
No 73
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.67 E-value=9e-08 Score=74.47 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=62.1
Q ss_pred EEEEEecCHHHHHHHHHHHhcCC---cEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
|+||||+|+||+.+++.+ ..-| .+|+ +++|+++.. +++.+.| + ... ...+..+++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999997 5778 8999 558887543 2222222 1 111 12378999999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
++| |+...-+-.+. ....++.++|+++=|
T Consensus 68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 999 44333333444 666789999988643
No 74
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.67 E-value=5.8e-08 Score=89.72 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=92.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
...+++|+||+|.||..++..|. ..|.+|++|||+.+...+ + .++| .....+..|+.+.||+|+.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~~-f--------~~~G-----a~v~~sPaeVae~sDvvit 97 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCKE-F--------QEAG-----ARVANSPAEVAEDSDVVIT 97 (327)
T ss_pred cccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHHH-H--------HHhc-----hhhhCCHHHHHhhcCEEEE
Confidence 35789999999999999999985 679999999999865422 1 1222 2345789999999999999
Q ss_pred cCCCChhhhcccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301 243 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (328)
Q Consensus 243 ~~plt~~t~~li~--~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalD 297 (328)
++|...+.+.++. ...|+..++|... |+.+.-+.--...|.++++... +-.+|
T Consensus 98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~--~~~vD 153 (327)
T KOG0409|consen 98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG--GRFVD 153 (327)
T ss_pred EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC--CeEEe
Confidence 9999999888874 4478878888777 8998877777778888888753 34455
No 75
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.66 E-value=1.3e-07 Score=89.34 Aligned_cols=141 Identities=21% Similarity=0.197 Sum_probs=85.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.++|+|||+|.||+.+|+.+ +..| .+|++||+++... +. +...+.. .....++++.+++||+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~--------a~~~g~~---~~~~~~~~~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR--------ARELGLG---DRVTTSAAEAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH--------HHhCCCC---ceecCCHHHHhcCCCEEEE
Confidence 46899999999999999997 4556 4899999986532 11 1111211 1123467888999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC---CCCC-C---CCCcccCCCe
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPY-M---KPGLSEMKNA 315 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~---~EP~-~---~~~L~~~~nv 315 (328)
|+|. ..+..++ ++....++++.++++++....--.+++.+.+..+ + -.+.... .|-. + ...|+.-.++
T Consensus 73 avp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~ 147 (307)
T PRK07502 73 CVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-V--HFIPGHPLAGTEHSGPDAGFAELFENRWC 147 (307)
T ss_pred CCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-C--eEEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence 9994 3334433 4555678999999999664421122232222221 1 1233221 1110 1 1256666788
Q ss_pred EEcCCCCC
Q 020301 316 IVVPHIAS 323 (328)
Q Consensus 316 ilTPHia~ 323 (328)
++||+-++
T Consensus 148 ~l~~~~~~ 155 (307)
T PRK07502 148 ILTPPEGT 155 (307)
T ss_pred EEeCCCCC
Confidence 99997654
No 76
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.65 E-value=1.7e-07 Score=87.46 Aligned_cols=135 Identities=14% Similarity=0.205 Sum_probs=82.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl 246 (328)
+|||||+|.||+.+|+.| +..|.+|++||+++... +. +...+... ....+. +.+++||+|++|+|.
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~--------a~~~g~~~---~~~~~~-~~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ER--------AIERGLVD---EASTDL-SLLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH--------HHHCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence 699999999999999997 56799999999986432 11 11112111 111233 468999999999993
Q ss_pred ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC---CCCCC-CC---CCcccCCCeEEcC
Q 020301 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF---EDEPY-MK---PGLSEMKNAIVVP 319 (328)
Q Consensus 247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~---~~EP~-~~---~~L~~~~nvilTP 319 (328)
..+..++ ++....+++++++++++.-. .. ..+++.+..-. .+... ..|.. .. ..|+.-.++++||
T Consensus 68 -~~~~~~~-~~l~~~l~~~~ii~d~~Svk---~~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 68 -GLLLPPS-EQLIPALPPEAIVTDVGSVK---AP-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred -HHHHHHH-HHHHHhCCCCcEEEeCcchH---HH-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 3334433 56667789999999997744 22 33333322111 12211 11110 00 1267778899999
Q ss_pred CCCC
Q 020301 320 HIAS 323 (328)
Q Consensus 320 Hia~ 323 (328)
+-.+
T Consensus 140 ~~~~ 143 (279)
T PRK07417 140 TENT 143 (279)
T ss_pred CCCC
Confidence 7543
No 77
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.62 E-value=1.7e-07 Score=87.44 Aligned_cols=136 Identities=23% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEE--EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhcCCEEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS 241 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~ 241 (328)
-++|+|+|+|.||+.+|+.+ +.-|..+ +++|++....... ...........+ ..+.+.+||+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 36899999999999999997 5666655 6666654332111 001111111123 367788899999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----CCCcccCCCeEE
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----KPGLSEMKNAIV 317 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----~~~L~~~~nvil 317 (328)
+++| -..|..++ ++....+|+|+++++++.-.----++..+.+.++. .+..--|.. ..++++-..+++
T Consensus 70 vavP-i~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVP-IEATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred Eecc-HHHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEE
Confidence 9999 35566655 45555899999999998766444444444443221 233335642 237888889999
Q ss_pred cCCC
Q 020301 318 VPHI 321 (328)
Q Consensus 318 TPHi 321 (328)
||.-
T Consensus 142 tp~~ 145 (279)
T COG0287 142 TPSE 145 (279)
T ss_pred cCCC
Confidence 9974
No 78
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.62 E-value=1.4e-07 Score=91.28 Aligned_cols=138 Identities=18% Similarity=0.116 Sum_probs=85.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++|+|||+|.||+++|+.+ +..|.+|.+|++++....... . ...+.. .....++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a-----~~~~~~---~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--A-----LGFGVI---DELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--H-----hcCCCC---cccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999997 677888777777654321110 0 001111 1123578889999999999999
Q ss_pred CChhhhccccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC----------CCcccCCC
Q 020301 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN 314 (328)
Q Consensus 246 lt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~n 314 (328)
. ..+..++. +... .+++++++++++.-..-..+++.+.+..+ . -.++.. |.+. ..|+.-..
T Consensus 70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~--~~ig~H---PMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I--RFVGGH---PMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C--eEEeeC---CcCcCchhhHHHhcHHHHCCCc
Confidence 5 45666663 3333 47899999999876543333333332211 1 123322 3221 24666677
Q ss_pred eEEcCCCC
Q 020301 315 AIVVPHIA 322 (328)
Q Consensus 315 vilTPHia 322 (328)
.++||+-.
T Consensus 142 ~il~~~~~ 149 (359)
T PRK06545 142 WVLTPDDH 149 (359)
T ss_pred EEEecCCC
Confidence 88998754
No 79
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.60 E-value=2.6e-07 Score=86.02 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
...++||||+|+||+.+++.+.+. .++++. +||+++... +++.+.| +. ...+.+++++++++|+|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV 72 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence 347899999999999999997543 588876 678876432 2222211 10 113468999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+|+|.. +..-+.. ..++.|..++..++|.+.+.++|.++.+++...
T Consensus 73 i~tp~~--~h~e~~~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 73 EAAPAS--VLRAIVE---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ECCCcH--HHHHHHH---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 999943 3322233 334667777888899888899999998886543
No 80
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.59 E-value=6.2e-07 Score=87.21 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..++|+||| +|.||+.+|+.| +..|..|.+||+... .+.++++++||+|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence 558999999 999999999997 577999999997421 256778899999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
|+|.. .+..++ ++ +..+++|+++++++.-.
T Consensus 149 avP~~-~~~~~~-~~-l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 149 SVPIH-LTEEVI-AR-LPPLPEDCILVDLTSVK 178 (374)
T ss_pred eCcHH-HHHHHH-HH-HhCCCCCcEEEECCCcc
Confidence 99954 455555 33 44489999999997754
No 81
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.58 E-value=5e-07 Score=84.28 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
+.+|||||+|+||+.+|+.|. .-| .+|++|||+..+..+.+...| + .....+..+++++||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence 468999999999999999975 444 689999987644333322211 1 11235778889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
++++| ..+....+ ......++++.++|++.-| +..+.|.+.+..
T Consensus 70 ilav~-p~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 70 FLAMK-PKDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred EEEeC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 99999 34455545 4444557889999998655 467777776643
No 82
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.56 E-value=4.5e-07 Score=89.58 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=91.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-----------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ell 234 (328)
.+|||||+|.||..+|..++ . |.+|++||+++.. .+... .|..+ .+....++..+.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~-ve~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~ 74 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKR-ILELK---------NGVDVNLETTEEELREARYLKFTSEIEKI 74 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHH-HHHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence 57999999999999999975 3 6999999998754 22211 12111 0011123334568
Q ss_pred hcCCEEEEcCCCC------hhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCccEE-EEeCCCCC
Q 020301 235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDE 302 (328)
Q Consensus 235 ~~aDiV~l~~plt------~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL-~~--g~i~ga-alDV~~~E 302 (328)
++||++++|+|.. ++...++ .+...+.+++|.++|+.|.-.+--.+.+++.+ ++ |...+- -.=+|.+|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 9999999999954 2334554 34567889999999999998887777654444 33 321111 11146778
Q ss_pred CCCC----CCcccCCCeEE
Q 020301 303 PYMK----PGLSEMKNAIV 317 (328)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (328)
|... ..+.+.|.++.
T Consensus 155 ~v~~G~a~~~~~~~~riv~ 173 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITS 173 (425)
T ss_pred cCCCCcccccccCCCeEEE
Confidence 8743 25677777765
No 83
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=1.8e-06 Score=80.94 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=90.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC---------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP---------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++ .-|.+|+.||+++..... +............+... .......++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999999999999974 669999999998653211 11100000001111100 1112346888999
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n 314 (328)
+.||+|+.++|...+.+.-+-++.-+.++++++|+..+.+ +....+.+.++... .-.++-. .+|.+.++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l 152 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNT 152 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence 9999999999976666655556666778899988543332 35566777665322 2233322 234556677
Q ss_pred eEEcCCCCC
Q 020301 315 AIVVPHIAS 323 (328)
Q Consensus 315 vilTPHia~ 323 (328)
|.+.|+-..
T Consensus 153 vevv~~~~t 161 (287)
T PRK08293 153 AEIMGHPGT 161 (287)
T ss_pred EEEeCCCCC
Confidence 788776543
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.52 E-value=4.7e-07 Score=78.29 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.4
Q ss_pred cccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.++.|+++.|||.|.+ |+.+|+.| ...|++|++.+++. .++.+.+.+||+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3689999999999986 88899997 68899999988753 356788999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd 278 (328)
|+.+.+.. ++|..+. ++++.++||+|...-+|
T Consensus 91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 99998842 3788875 57899999999887776
No 85
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.52 E-value=5.7e-06 Score=77.10 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=63.7
Q ss_pred cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.++.||++.|||.|. +|+.+|.+| ...|+.|+.++... .++++.+++||+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI 205 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADL 205 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCE
Confidence 579999999999999 999999997 57899999886431 378899999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+.+++- .+++.. +.+|+|+++||++
T Consensus 206 vi~avG~----p~~v~~---~~vk~gavVIDvG 231 (285)
T PRK10792 206 LVVAVGK----PGFIPG---EWIKPGAIVIDVG 231 (285)
T ss_pred EEEcCCC----cccccH---HHcCCCcEEEEcc
Confidence 9999952 235666 4468999999998
No 86
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=1e-05 Score=75.44 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=105.1
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+.+....++ ..+++++.+.+.. +.|+++++.+ ..+++. +++.++-. | -+|.+--
T Consensus 62 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~- 130 (287)
T PRK14176 62 ACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--K-------DADGFHP- 130 (287)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCh-
Confidence 3456688877665543 3467777765532 5689999864 344443 44443322 2 1111110
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
...|-...+.+. ....++.-++.++= ..+.++.||++.|||.|. +|+.+|.
T Consensus 131 --~N~g~l~~g~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla~ 182 (287)
T PRK14176 131 --YNMGKLMIGDEG-LVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMAA 182 (287)
T ss_pred --hhhhhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHHH
Confidence 011111122232 34455655443331 123579999999999999 9999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ...|+.|..++... .++.+..++||+|+.++.- .+++..+ .+
T Consensus 183 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~AvG~----p~~i~~~---~v 226 (287)
T PRK14176 183 ML-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVATGV----KHLIKAD---MV 226 (287)
T ss_pred HH-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEccCC----ccccCHH---Hc
Confidence 97 57899999887421 3788999999999987663 2467666 56
Q ss_pred CCCcEEEEcCC
Q 020301 263 KKEAILVNCSR 273 (328)
Q Consensus 263 k~ga~lIN~aR 273 (328)
|+|+++||++-
T Consensus 227 k~gavVIDvGi 237 (287)
T PRK14176 227 KEGAVIFDVGI 237 (287)
T ss_pred CCCcEEEEecc
Confidence 89999999974
No 87
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=3.7e-06 Score=78.13 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++|+.+.+. +..|+++++.+ ..++.. +++..+-. |=|- |+....+
T Consensus 50 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~- 121 (279)
T PRK14178 50 ACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNL- 121 (279)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH-
Confidence 3456688877665543 356777776653 15689999864 345443 44443322 2111 2211111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++= + .+.++.|+++.|+|.+ ..|+.+|.
T Consensus 122 -----g~l~~~~~~-~~PcTp~av~~ll~----~---------------------~~i~l~Gk~V~ViGrs~~vGrpla~ 170 (279)
T PRK14178 122 -----GRLVSGLPG-FAPCTPNGIMTLLH----E---------------------YKISIAGKRAVVVGRSIDVGRPMAA 170 (279)
T ss_pred -----HHHhCCCCC-CCCCCHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCccccHHHHH
Confidence 111122333 34455555443321 1 1357999999999999 99999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..+|++|..++.+. .++.+.+++||+|+.+++.. +++.++.+
T Consensus 171 lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk~----~lv~~~~v--- 214 (279)
T PRK14178 171 LL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGKA----GFITPDMV--- 214 (279)
T ss_pred HH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCcc----cccCHHHc---
Confidence 97 68999999876432 36888999999999999732 77888885
Q ss_pred CCCcEEEEcCC
Q 020301 263 KKEAILVNCSR 273 (328)
Q Consensus 263 k~ga~lIN~aR 273 (328)
|||+++||++-
T Consensus 215 k~GavVIDVgi 225 (279)
T PRK14178 215 KPGATVIDVGI 225 (279)
T ss_pred CCCcEEEEeec
Confidence 99999999984
No 88
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.49 E-value=6.9e-07 Score=82.53 Aligned_cols=103 Identities=31% Similarity=0.398 Sum_probs=73.7
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc----EEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+|||||+|+||+.+|+.|. .-|. +|++| ||++... +.. ...| .....+..+++++||+|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvVi 66 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVII 66 (266)
T ss_pred eEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEEE
Confidence 6999999999999999975 4566 88999 8875432 211 1112 223357788899999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+|+| ....+.++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 67 l~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 67 LAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred EEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 9997 55666666 3455667889999988655 477777766643
No 89
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.47 E-value=2e-06 Score=72.54 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=77.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.+++++|+|.|.||+.+++.++ ..| .+|.++|++.... ++..+.++ .... .....+++++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence 466889999999999999999974 564 7899999986542 22222211 0000 01235777889999999
Q ss_pred EEcCCCChh-hh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 241 ~l~~plt~~-t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
++++|.... .. ..+... .++++.+++|++-.+.. + .|.+.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 999996653 12 223332 36899999999876533 3 7777777653
No 90
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=2.1e-06 Score=80.60 Aligned_cols=128 Identities=22% Similarity=0.260 Sum_probs=80.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh---hhhhcCCCCC--------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++ ..|.+|++||++++... ...+... ......+..+ .......+++ .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 57999999999999999974 67999999999865321 1111000 0000112111 0011234665 47
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~ 300 (328)
++||+|+.++|...+.+..+-++..+.++++++|+ |+|.-. ...|.+.+.. .-...++-.+.
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~ 144 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN 144 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence 89999999999877766555566777889999998 665543 3467777643 22334555555
No 91
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.46 E-value=1.2e-06 Score=81.70 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=75.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+++||||+|+||+++|+.|. .-| .+|++|||+... .+...+.| + .....+..+++++||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~-~~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSN-LKNASDKY-------G-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHH-HHHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence 47999999999999999874 334 379999998644 22211111 2 112357788999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+|+| ......++ ++.-..++++.++|.+.=| ++.+.|.+.|..
T Consensus 69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~ 111 (272)
T PRK12491 69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDR 111 (272)
T ss_pred EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCC
Confidence 9999 35566655 3444556889999999777 677888887753
No 92
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.44 E-value=6.9e-06 Score=76.55 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=106.4
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+++....++ ..+++++.+.+.. ..|+++++.+ ..+++. +++.++-. | -+|.+.-.
T Consensus 55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~~ 124 (285)
T PRK14191 55 ACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHPL 124 (285)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccChh
Confidence 3456688877665543 3466777765532 4679999864 344443 33333222 2 11211110
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~ 182 (328)
..|-...+.++ ....++.-++.++= + .+.++.||++.|||-| .+|+.+|.
T Consensus 125 ---n~g~l~~g~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla~ 175 (285)
T PRK14191 125 ---NIGKLCSQLDG-FVPATPMGVMRLLK----H---------------------YHIEIKGKDVVIIGASNIVGKPLAM 175 (285)
T ss_pred ---hHHHHhcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCchhHHHHHH
Confidence 01111222232 34556665553331 1 2357999999999999 99999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..++... .++.+.+++||+|+.+++. .+++..+.+
T Consensus 176 lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v--- 219 (285)
T PRK14191 176 LM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV--- 219 (285)
T ss_pred HH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc---
Confidence 97 57799999875321 2577899999999999862 557887766
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 220 k~GavVIDvGi~ 231 (285)
T PRK14191 220 KKGAVVVDIGIN 231 (285)
T ss_pred CCCcEEEEeecc
Confidence 899999999853
No 93
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.42 E-value=1e-06 Score=73.42 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=73.3
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.|+++.|||.|.+|+.++..| ...|++ |+.++|+.+. .++..+.+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 78999999999999999999997 578986 9999998753 23332222 11112233456777889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCc-EEEEcCCCccc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVI 277 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga-~lIN~aRG~~v 277 (328)
+.+.|.... .+.++.++..++.. ++++.|...-|
T Consensus 80 I~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 80 INATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp EE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred EEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 999885433 78888888776544 88888654333
No 94
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.40 E-value=2.6e-06 Score=79.95 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=85.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCCc--------cccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (328)
++|||||.|.||..+|..++ ..|.+|+.||++++.... +.....-+.+.+.|.... ......++ +.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 48999999999999999975 679999999999865321 111111111122222110 11134577 4579
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
.||+|+-++|.+.+.+..+-.+.=+.+ +++++|++.+.+ +...++..+++. .=.-.++..|.+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~--~~~~~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS--IPIMKLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-CccEEEEecCCC
Confidence 999999999999998887765444444 899999888665 445555555543 223456666664
No 95
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.39 E-value=2.1e-06 Score=84.69 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=75.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH------------
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------ 233 (328)
++|+|||+|.||..+|..|+ ..|.+|++||+++... +.. ..|..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v-~~l---------~~g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAV-DTI---------NRGEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHH-HHH---------HCCCCCc---CCCCHHHHHHHHhhcCceee
Confidence 68999999999999999984 6799999999986542 211 1111111 11233333
Q ss_pred ---hhcCCEEEEcCCCC------hhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 234 ---l~~aDiV~l~~plt------~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
++.||+|++|+|.. ++...+. -+.....+++|+++|+.|.-..=-.+.+...|.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 34799999999953 1222322 2556777899999999999777777777776665
No 96
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.39 E-value=3.6e-06 Score=80.29 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=75.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhcCCC-CCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGE-QPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+|+|||.|.||..+|.+|+ ..|.+|.+|+|++... +..... ... ....+. .+.......+++++++.||+|+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 47999999999999999984 6799999999975431 111110 000 000011 000122345888889999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG-~~vd--e~aL~~aL~~ 288 (328)
+|.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 9954 22 6666889999999999998 3332 4566666654
No 97
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.39 E-value=3e-05 Score=78.02 Aligned_cols=227 Identities=18% Similarity=0.210 Sum_probs=120.9
Q ss_pred HHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 020301 30 INLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN 99 (328)
Q Consensus 30 ~~~l~~~~~~~~~~~~--~~~~~~~e~~~~~---~~-----~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~ 99 (328)
.+.|.+.|+++.+... ....+++++..+. +. +++|.|+- ...+ +.+.++.++. |..++....-..|.
T Consensus 23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilk-V~~P-~~~e~~~l~~-g~~li~~l~p~~~~ 99 (509)
T PRK09424 23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILK-VNAP-SDDEIALLRE-GATLVSFIWPAQNP 99 (509)
T ss_pred HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEE-eCCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence 5667778888866543 1234566666541 10 24666662 1222 3455666765 32445444444444
Q ss_pred cChhHHHhCCceEec---CCCC---C----CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcc-cccccCCCEE
Q 020301 100 VDVNAANKYGIAVGN---TPGV---L----TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTV 168 (328)
Q Consensus 100 id~~~~~~~gI~v~n---~p~~---~----~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~-~~~~l~g~tv 168 (328)
=-++...++||.+.. .|.. . =.++|+.+= .|-+....+ .-+.+ .+... ......|.+|
T Consensus 100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~--~~~~~---~~g~~taaG~~pg~kV 168 (509)
T PRK09424 100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAH--EFGRF---FTGQITAAGKVPPAKV 168 (509)
T ss_pred HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHH--Hhccc---CCCceeccCCcCCCEE
Confidence 345777888987765 2210 0 012233221 111111111 11111 01000 0113569999
Q ss_pred EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---c--CCCCCccccc-c-CC--------HHHH
Q 020301 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---A--NGEQPVTWKR-A-SS--------MDEV 233 (328)
Q Consensus 169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~-~-~~--------l~el 233 (328)
.|+|.|.+|...++.+ +.+|++|+++|+++... +..+.++.... . .+....++.. . .+ +.+.
T Consensus 169 lViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rl--e~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 169 LVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVA--EQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred EEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 9999999999999985 89999999999987542 12222332100 0 0000000000 0 01 1222
Q ss_pred hhcCCEEEEcCCCChh-hhccccHHHHhcCCCCcEEEEcCC
Q 020301 234 LREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 234 l~~aDiV~l~~plt~~-t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
++.+|+|+.+..-... ...++.++.++.||+|+++|+++=
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 3579999988753221 345667999999999999999974
No 98
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.38 E-value=7e-06 Score=76.63 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=77.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhcCCCCCc--------cccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (328)
++|+|||.|.||..+|..++ ..|.+|++||+++...... .....-+...+.+.... ......+.++ ++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 57999999999999999974 6699999999987543110 00000001111221100 1112345554 79
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.||+|++++|-..+.+.-+-++.-+.++++++++..+.| +....|.+.+..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 999999999977777755556666778999988554444 666788888854
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.35 E-value=3.8e-06 Score=78.37 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=74.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
.+++|||+|+||+.+|+.+. ..| .+|++|+++.....+.....+ + ......+.+++++++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999974 445 689999987543222211111 0 0111357788899999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 291 (328)
+|+| ......++ .+....++++..+|.+.=| +..+.|.+.+...++
T Consensus 70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 9999 23344433 3333456778899999777 777788887753334
No 100
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.34 E-value=5.2e-07 Score=80.97 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHH-hcCCcEEEE-EcCCch
Q 020301 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA 200 (328)
Q Consensus 123 vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~-~d~~~~ 200 (328)
.++|.+..++...|++. +|. ..++++|||+|.+|+.+++.+. ...|+++.+ +|+++.
T Consensus 63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~ 121 (213)
T PRK05472 63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE 121 (213)
T ss_pred CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence 35688999998888775 121 2357999999999999998531 357888875 576543
Q ss_pred hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEEcCCCChh---hhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~plt~~---t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
.. .. . -.+ .......++++++++ .|.+++++|.+.. ...+.......-|...++.+|+.||.
T Consensus 122 ~~-~~-------~--i~g---~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~ 188 (213)
T PRK05472 122 KI-GT-------K--IGG---IPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV 188 (213)
T ss_pred hc-CC-------E--eCC---eEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence 21 00 0 001 111233568888865 9999999997665 22333333445566778999999999
Q ss_pred ccCHHHHHHHHHc
Q 020301 276 VIDEVALVEHLKQ 288 (328)
Q Consensus 276 ~vde~aL~~aL~~ 288 (328)
+|+.++|..+|..
T Consensus 189 ~v~~~~l~~~l~~ 201 (213)
T PRK05472 189 IVRNVDLTVELQT 201 (213)
T ss_pred EEEEechHHHHHH
Confidence 9999999999874
No 101
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.32 E-value=2.7e-06 Score=80.61 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=70.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-CC-CCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
++|+|||.|.||..+|..|+ ..|.+|.+|++++... +..... +..... .+ ..+.+.....+++++++.||+|++|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 37999999999999999984 6799999999975432 111110 000000 00 0001222345788899999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v 277 (328)
+|. ..+..++ +.....++++.++|+++.|--.
T Consensus 79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 995 5666665 3455667889999999766443
No 102
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.30 E-value=7.9e-06 Score=82.43 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=89.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (328)
++|||||.|.||+.+|..++ ..|.+|..||+++..... +.. ..+.. ....|... .......++++ +
T Consensus 6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 57999999999999999975 669999999998764321 111 11111 11222110 01123457766 5
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (328)
+.||+|+-++|...+.+..+-.+.-+.++++++|. |||.-. ...+.++++. .-...++..|.+-|.
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCcccc
Confidence 79999999999888888777666666788888877 776644 4567777754 445678887776553
No 103
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.30 E-value=7.6e-06 Score=82.67 Aligned_cols=131 Identities=22% Similarity=0.322 Sum_probs=87.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (328)
++|||||.|.||+.+|..++ ..|.+|+.||+++..... +.. +.+.. ..+.|... .......++++ +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAK-LVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 57999999999999999975 669999999999764321 111 11111 11222100 01123357766 5
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
+.||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+ ..|.++++. .=.-.++..|.+-|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 7999999999999998887766655566899999 59987554 467777654 22346777777544
No 104
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.28 E-value=1.3e-05 Score=75.15 Aligned_cols=132 Identities=19% Similarity=0.294 Sum_probs=82.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhh--hh-hhhhcCCCCC--------ccccccCCHHH
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA--YG-QFLKANGEQP--------VTWKRASSMDE 232 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~--~~-~~~~~~~~~~--------~~~~~~~~l~e 232 (328)
++|+|||.|.||..+|..++ ..|.+|+.||+++..... +.... |+ ......+... .......++ +
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 58999999999999999974 679999999998754211 10000 00 0000111100 001122345 5
Q ss_pred HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC
Q 020301 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (328)
Q Consensus 233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E 302 (328)
.++.||+|+.++|...+.+.-+-++.-+.++++++|++.+.| +....+.+.+.. .-.-.++..|.+-
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~ 148 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA 148 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence 679999999999976655554445555667899999888777 466777777754 2234455555443
No 105
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.28 E-value=1.6e-06 Score=80.63 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=76.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
.+...++.|||.|.+|..-||++ .++|++|...|.+.+. +....+.|+. ......+....+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~------rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGG------RVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCc------eeEEEEcCHHHHHHHhhhccEEE
Confidence 46677899999999999999994 7999999999998643 2222222321 11122234457899999999995
Q ss_pred Ec--CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 242 l~--~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
-. +| ....-.++.++.+++||||+++|+++
T Consensus 237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEec-CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 44 45 34567889999999999999999995
No 106
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.27 E-value=3.4e-06 Score=78.48 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=79.6
Q ss_pred EEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|+|||+|.||+.+|+.|+ ..| .+|++||+++..... +...|.. ....+++++. +||+|++|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~---------~~~~g~~----~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKK---------ALELGLV----DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHH---------HHHCCCC----cccCCHHHHh-cCCEEEEeC
Confidence 6999999999999999974 445 589999998653211 1112221 0124667765 599999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC------CCCC-CCcccCCCeEE
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMK-PGLSEMKNAIV 317 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E------P~~~-~~L~~~~nvil 317 (328)
|. ..+..++ .+... +++++++++++. + -..+.+++.+. ..+..++....- |... ..+++-..+++
T Consensus 67 p~-~~~~~~~-~~l~~-l~~~~iv~d~gs---~-k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il 138 (275)
T PRK08507 67 PV-DAIIEIL-PKLLD-IKENTTIIDLGS---T-KAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVL 138 (275)
T ss_pred cH-HHHHHHH-HHHhc-cCCCCEEEECcc---c-hHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEE
Confidence 94 3444544 34555 889999999754 2 34456666543 111233433321 1111 13555556778
Q ss_pred cCCC
Q 020301 318 VPHI 321 (328)
Q Consensus 318 TPHi 321 (328)
+|.-
T Consensus 139 ~~~~ 142 (275)
T PRK08507 139 CDVE 142 (275)
T ss_pred ecCC
Confidence 8754
No 107
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.26 E-value=3e-06 Score=89.33 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=89.0
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
++|||||+|.||+.+|+.+ +..| .+|++||++.... +. +.+.+.. .....+++++++++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~-~~--------a~~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSL-EL--------AVSLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHH-HH--------HHHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 5899999986542 11 1111221 01235688889999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----------CCCcccCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 313 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~ 313 (328)
+|.. .+..++ ++....++++.++++++.-.-.-.+++.+.+... ...+..+=|.. ++.|+.-.
T Consensus 71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 9943 444444 3344557889999999875432344555554331 12233334421 23577888
Q ss_pred CeEEcCCCCC
Q 020301 314 NAIVVPHIAS 323 (328)
Q Consensus 314 nvilTPHia~ 323 (328)
+++++|+-..
T Consensus 144 ~~~~~~~~~~ 153 (735)
T PRK14806 144 KVILTPLAET 153 (735)
T ss_pred eEEEECCCCC
Confidence 8999997543
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.26 E-value=4.8e-06 Score=78.32 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
|+.+|++|+ .-|..|++||+++....+...+ .+...| .....+..++.+.||+|++|+|..++++.++ .
T Consensus 32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 899999974 6799999999876432111000 011223 2234688999999999999999888888887 5
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
..++.+++|+++||++. ++.+.+++.|+.
T Consensus 101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 101 TIIEHVPENAVICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred HHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence 68899999999999965 778888888887
No 109
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.25 E-value=4.7e-06 Score=83.98 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=76.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh----hhhhhhhcCCCCCcc-ccccCCHHHHhhcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT----AYGQFLKANGEQPVT-WKRASSMDEVLREAD 238 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~----~~~~~~~~~~~~~~~-~~~~~~l~ell~~aD 238 (328)
++|||||.|.||..+|..++ .-|.+|++||+++..... +... .+.. +........+ .....+++++++.||
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAM-LTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhh-hccchhhhhhceEeeCCHHHHhcCCC
Confidence 47999999999999999985 669999999998754211 1000 0000 0000000011 233468889999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+|+.++|...+.+..+-.+.-+.++++++|... ..++ ....|.+.+..
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss-Tsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDALIGSS-TSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc-CCCC-CHHHHHhhcCC
Confidence 999999987766664444455567888755444 4443 46677777754
No 110
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=7.2e-05 Score=69.72 Aligned_cols=169 Identities=18% Similarity=0.282 Sum_probs=106.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++|+.+.+.. ..|+++++.+ ..+++. +++.++-. |=|- |+..+.+.
T Consensus 55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~g 127 (284)
T PRK14170 55 RTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNVG 127 (284)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhhh
Confidence 3456688877665543 3467777766531 5689999864 344443 44443322 2110 21111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
. ...+.++ ....++.-++.++- ..+.++.||++.|||-+. +|+.+|.
T Consensus 128 ~------l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla~ 175 (284)
T PRK14170 128 N------LFIGKDS-FVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVAQ 175 (284)
T ss_pred H------HhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence 1 1112222 34555665554431 124689999999999986 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..+.... .++.+.+++||+|+.+++- .+++..+.+
T Consensus 176 lL-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----~~~i~~~~v--- 219 (284)
T PRK14170 176 LL-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVATGL----AKFVKKDYI--- 219 (284)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---
Confidence 97 56799999875321 3688999999999999883 456877664
Q ss_pred CCCcEEEEcCCCc
Q 020301 263 KKEAILVNCSRGP 275 (328)
Q Consensus 263 k~ga~lIN~aRG~ 275 (328)
|+|+++||++--.
T Consensus 220 k~GavVIDvGin~ 232 (284)
T PRK14170 220 KPGAIVIDVGMDR 232 (284)
T ss_pred CCCCEEEEccCcc
Confidence 6999999997543
No 111
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.23 E-value=6.2e-06 Score=70.40 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=64.3
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|+|+|.|+.|.++|..| ..-|-+|..|.+..+. .+...+. ..... -.+. .+.......+++++++.||+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 689999999999999997 5778999999998632 1211110 00000 0000 1112223468999999999999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
|. ...+. +-+.....++++..+|++..|=
T Consensus 78 Ps-~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 93 33333 3355556667899999998764
No 112
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=0.00011 Score=68.52 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=107.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (328)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~ 102 (328)
+..++.|.+++.+..++ ..+.+|+.+.+. ++.|+++++.+ ..+++. +++.++-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (284)
T PRK14190 55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINV 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhH
Confidence 34456688887765543 346677766553 15678998864 344443 33333222 2110 1111111
Q ss_pred hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (328)
Q Consensus 103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA 181 (328)
|-...+.++ ....++.-++.++= + .+.++.||++.|||-+. +|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~av~~lL~----~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 128 ------GRMMLGQDT-FLPCTPHGILELLK----E---------------------YNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred ------HHHhcCCCC-CCCCCHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 111122233 34455655543331 1 23579999999999876 799999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+| ..-|+.|+.++... .++.+.+++||+|+.++.- .++|+.+.+
T Consensus 176 ~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i-- 220 (284)
T PRK14190 176 QLL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV-- 220 (284)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence 997 57799999876321 3688999999999999863 457888887
Q ss_pred CCCCcEEEEcCCCc
Q 020301 262 MKKEAILVNCSRGP 275 (328)
Q Consensus 262 mk~ga~lIN~aRG~ 275 (328)
|+|+++||++.-.
T Consensus 221 -k~gavVIDvGi~~ 233 (284)
T PRK14190 221 -KEGAVVIDVGVNR 233 (284)
T ss_pred -CCCCEEEEeeccc
Confidence 7999999998654
No 113
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.22 E-value=1.2e-05 Score=75.93 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=71.8
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh----hhhhhhhcCCCC---CccccccCCHHHHhhcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGEQ---PVTWKRASSMDEVLREAD 238 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~l~ell~~aD 238 (328)
++|||||.|.||..+|..++ ..|.+|++||++.... +...+ .++. ....+.. ........+++++++.||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGAL-ERARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHH-HHHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 57999999999999999974 6799999999976432 11111 0110 0000000 000122357888899999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+|++++|...+...-+-.+.-..++++++++..+-| +....|.+.+..
T Consensus 82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999999966543332323333446777776544334 346677777753
No 114
>PRK07680 late competence protein ComER; Validated
Probab=98.21 E-value=1.1e-05 Score=75.11 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=72.3
Q ss_pred EEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
++||||+|.||+.+|+.|. ..| .+|.+|+|++... +...+.| . +.....+.++++..||+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~------~-----g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY------P-----GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc------C-----CeEEECCHHHHHHhCCEEEE
Confidence 6999999999999999874 445 3799999986432 2211111 0 11223577888999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
++| ......++ ++....++++.++|.++-| +..+.|.+.+.
T Consensus 69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 998 33455555 3444567788999999844 47777777664
No 115
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=5.3e-05 Score=70.46 Aligned_cols=166 Identities=19% Similarity=0.270 Sum_probs=103.4
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++++.+.+. +..|+++++.+ ..++.. +++.++-. |=|- |+..+.+
T Consensus 55 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~- 126 (281)
T PRK14183 55 ACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KDVD----GFHPYNV- 126 (281)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hccc----ccChhhh-
Confidence 3446688777665543 346677766553 15689999864 345543 44443322 2110 1111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-| .+|+.+|.
T Consensus 127 -----g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla~ 175 (281)
T PRK14183 127 -----GRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMAA 175 (281)
T ss_pred -----hHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHHH
Confidence 111112232 3444555544332 11 2358999999999999 79999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..+.... .++.+..++||+|+.++.- .+++..+.+
T Consensus 176 lL-~~~~AtVti~hs~T----------------------------~~l~~~~~~ADIvV~AvGk----p~~i~~~~v--- 219 (281)
T PRK14183 176 LL-LNANATVDICHIFT----------------------------KDLKAHTKKADIVIVGVGK----PNLITEDMV--- 219 (281)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCCEEEEecCc----ccccCHHHc---
Confidence 98 56799998775321 3688999999999999873 456777665
Q ss_pred CCCcEEEEcC
Q 020301 263 KKEAILVNCS 272 (328)
Q Consensus 263 k~ga~lIN~a 272 (328)
|+|+++||++
T Consensus 220 k~gavvIDvG 229 (281)
T PRK14183 220 KEGAIVIDIG 229 (281)
T ss_pred CCCcEEEEee
Confidence 6999999998
No 116
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=6.5e-05 Score=70.00 Aligned_cols=168 Identities=18% Similarity=0.279 Sum_probs=106.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+++....++ ..+++|+.+.+.. ..|+++++.+ ..+++ .+++.++-. |=|- |+....+
T Consensus 54 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~- 125 (282)
T PRK14169 54 RAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV- 125 (282)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh-
Confidence 3456688887665543 3467777765542 4589999864 34443 344444322 2110 1111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++= + .+.++.||++.|||-+. +|+.+|.
T Consensus 126 -----g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla~ 174 (282)
T PRK14169 126 -----GRLWANEPT-VVASTPYGIMALLD----A---------------------YDIDVAGKRVVIVGRSNIVGRPLAG 174 (282)
T ss_pred -----HHHhcCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence 111122233 34556665554431 1 13579999999999986 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|+.+.... .++.+..++||+|+.+++- .++++.+. .
T Consensus 175 lL-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~---v 218 (282)
T PRK14169 175 LM-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAVGV----PHFIGADA---V 218 (282)
T ss_pred HH-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---c
Confidence 97 57799998875321 3688999999999999883 45688775 5
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 219 k~GavVIDvGin 230 (282)
T PRK14169 219 KPGAVVIDVGIS 230 (282)
T ss_pred CCCcEEEEeecc
Confidence 799999999743
No 117
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=6e-05 Score=70.36 Aligned_cols=186 Identities=22% Similarity=0.262 Sum_probs=113.1
Q ss_pred CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHH
Q 020301 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA 81 (328)
Q Consensus 15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~ 81 (328)
+.-++...+.+... + .+.-++.|.+++....++ ..+++|+.+.+.. ..|+++++.+ ..++.. +++.
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~ 109 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEA 109 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 34444455544432 2 233456688887765543 3467777665531 4689999864 344443 3333
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (328)
Q Consensus 82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (328)
.+-. |=|- |+..+.+ |-...+.++ ....++.-++.++- ..+.
T Consensus 110 I~p~--KDVD----Gl~~~N~------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i 151 (287)
T PRK14173 110 IDPL--KDVD----GFHPLNV------GRLWMGGEA-LEPCTPAGVVRLLK-------------------------HYGI 151 (287)
T ss_pred cCcc--cccc----ccChhhh------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCC
Confidence 3222 2110 1111111 111112222 34455655553332 1235
Q ss_pred ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.||++.|||-+. +|+.+|.+| ..-|+.|+.+.... .++++..++||+|
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIv 202 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSKT----------------------------QDLPAVTRRADVL 202 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence 79999999999876 799999997 57799999876421 3788999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
+.++.- .+++..+.+ |+|+++||++--.
T Consensus 203 IsAvGk----p~~i~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 203 VVAVGR----PHLITPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred EEecCC----cCccCHHHc---CCCCEEEEccCcc
Confidence 999873 467887775 7999999998654
No 118
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.19 E-value=1e-05 Score=79.58 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-------Ccc-ccccCCHHHHhhcCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------PVT-WKRASSMDEVLREAD 238 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~ell~~aD 238 (328)
+|||||+|.||..+|..|+ ..|.+|++||+++... +........ ..+.+.. ..+ .....++++++++||
T Consensus 2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~-~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSP-IYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCC-CCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 6999999999999999984 6799999999986532 111100000 0000000 001 223357888899999
Q ss_pred EEEEcCCCChh------hhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHc
Q 020301 239 VISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALV-EHLKQ 288 (328)
Q Consensus 239 iV~l~~plt~~------t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~-~aL~~ 288 (328)
+|++|+|.... ...+. -+.....+++|.++|+.|.-.+=-.+.+. ..+++
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 99999995432 11222 24456678999999999865544555665 44444
No 119
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.18 E-value=1.5e-05 Score=77.94 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=85.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC------CCccccccCCHHHHhhcCCEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ell~~aDiV 240 (328)
+|+|||+|.||..+|..++ .|.+|++||++.... +...+..... .+.+. .........+..++++.||+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~-~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPI-VDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCC-CCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 6999999999999998763 489999999987542 2111100000 00000 001121223467788999999
Q ss_pred EEcCCCChhhh-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC----C
Q 020301 241 SLHPVLDKTTY-HLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----P 307 (328)
Q Consensus 241 ~l~~plt~~t~-~li~--------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~ 307 (328)
++|+|...+-+ +.+| +... .+++|.++|+.|.-.+=-.+.+.+.+.+.. . +|.+|.+.+ .
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~~---v---~~~PE~l~~G~a~~ 150 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTEN---I---IFSPEFLREGKALY 150 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcCc---E---EECcccccCCcccc
Confidence 99999542111 1111 2333 379999999999988877888888776532 2 236666533 2
Q ss_pred CcccCCCeEE
Q 020301 308 GLSEMKNAIV 317 (328)
Q Consensus 308 ~L~~~~nvil 317 (328)
.+...|.|++
T Consensus 151 d~~~p~rvv~ 160 (388)
T PRK15057 151 DNLHPSRIVI 160 (388)
T ss_pred cccCCCEEEE
Confidence 4555566654
No 120
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=1.1e-05 Score=74.38 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=71.8
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
+|||||+|+||+.+++.+. ..|. .+.+|+|+.... +++.+.+ + +.....+.++++++||+|+++
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999874 4443 367888876432 2221111 0 112235788899999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
+| ......++.. + .++++.++|.++ .-+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 99 3445555532 3 357899999986 448888888888653
No 121
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.16 E-value=6.6e-06 Score=71.05 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=69.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCCCc------------ccccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA 227 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~ 227 (328)
..+...++.|+|.|+.|+..++.+ +++|++|..+|.++.... +....+.....-. +.... .....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 457779999999999999999996 799999999998864321 1111110000000 00000 01122
Q ss_pred CCHHHHhhcCCEEEE-cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 228 SSMDEVLREADVISL-HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 228 ~~l~ell~~aDiV~l-~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
..|.+.++.+|+|+. ++--.+..-.++.++.++.|||+++++++|
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 357889999999875 333356778899999999999999999995
No 122
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=0.00025 Score=66.21 Aligned_cols=166 Identities=16% Similarity=0.266 Sum_probs=104.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+++....++ ..+++++.+.+. +..|+++++.+ ..+++. +++..+-. |=|- |+....+
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~- 127 (288)
T PRK14171 56 NAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLNV- 127 (288)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccch-
Confidence 4456688887665543 356777776654 25689999864 344443 44443322 2110 1111111
Q ss_pred HHHhCCceEecC-CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301 104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (328)
Q Consensus 104 ~~~~~gI~v~n~-p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA 181 (328)
|-...+. ++ ....++.-++.+ +++ .+.++.||++.|||-+. +|+.+|
T Consensus 128 -----g~l~~g~~~~-~~PcTp~av~~l----L~~---------------------y~i~l~GK~vvViGrS~iVGkPla 176 (288)
T PRK14171 128 -----GYLHSGISQG-FIPCTALGCLAV----IKK---------------------YEPNLTGKNVVIIGRSNIVGKPLS 176 (288)
T ss_pred -----hhhhcCCCCC-CcCCCHHHHHHH----HHH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 1111221 22 344455543322 221 13579999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+| ..-|+.|..++.. ..+|.+..++||+|+.++.- .++|..+.+
T Consensus 177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v-- 221 (288)
T PRK14171 177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF-- 221 (288)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence 997 5679999887632 14788999999999999883 367888765
Q ss_pred CCCCcEEEEcC
Q 020301 262 MKKEAILVNCS 272 (328)
Q Consensus 262 mk~ga~lIN~a 272 (328)
|+|+++||++
T Consensus 222 -k~GavVIDvG 231 (288)
T PRK14171 222 -NPESIVIDVG 231 (288)
T ss_pred -CCCCEEEEee
Confidence 7999999998
No 123
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.16 E-value=2.8e-05 Score=70.53 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=92.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCc----hhH--HHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (328)
..+.++++.|+|.|..|+.+|+.| ...|+ +|+.+||+. ... +..+...|. +..+... . . .++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence 468889999999999999999997 57788 499999982 211 111111111 1111011 1 1 3687
Q ss_pred HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ccEEEEeCCCCCCCCCCCcc
Q 020301 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS 310 (328)
Q Consensus 232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~ 310 (328)
+.++++|+|+.+.| .++++++.++.|+++.++...+. ...|.-+.+|.+.|. +..-|. .....
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~---------~~~~~ 156 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR---------SDFPN 156 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC---------CCCcc
Confidence 88899999999876 67899999999999999998883 335555555555544 333331 11234
Q ss_pred cCCCeEEcCCCC
Q 020301 311 EMKNAIVVPHIA 322 (328)
Q Consensus 311 ~~~nvilTPHia 322 (328)
+..|+++-|=++
T Consensus 157 Q~nn~~~fPg~~ 168 (226)
T cd05311 157 QVNNVLGFPGIF 168 (226)
T ss_pred ccceeeecchhh
Confidence 678999988765
No 124
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.16 E-value=1.4e-05 Score=75.71 Aligned_cols=120 Identities=21% Similarity=0.214 Sum_probs=72.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC--------ccccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (328)
++|+|||.|.||..+|..++ ..|.+|++||+++..... ......-..+...+... .......+++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 47999999999999999974 679999999998643211 00000000011122110 00123468889999
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.||+|+.++|...+.+..+-.+.-+..+++.++...+. . .....+.+.+..
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~ 132 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG 132 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence 99999999997655544433333233455555543333 3 346678887754
No 125
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=9.1e-05 Score=68.89 Aligned_cols=184 Identities=17% Similarity=0.231 Sum_probs=111.4
Q ss_pred CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHH
Q 020301 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA 81 (328)
Q Consensus 15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~ 81 (328)
+..++...+.+... + .+.-++.|.+++.+..++ ..+++|+.+.+.. +.|+++++.+ ..++.. +++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 112 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK 112 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 34444555554432 2 233456688877665543 3467777765532 5689999864 344443 4444
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (328)
Q Consensus 82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (328)
.+-. |=|- |+....+ |-...+.++ ....++.-++.++ ++ .+.
T Consensus 113 I~p~--KDVD----Gl~~~n~------g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i 154 (278)
T PRK14172 113 IDAN--KDID----CLTFISV------GKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNI 154 (278)
T ss_pred cCcc--cccC----ccCHhhH------HHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCC
Confidence 3322 2110 1111111 111112222 3344555544332 11 135
Q ss_pred ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.||++.|||-+. +|+.+|.+| ..-|+.|..++... .++.+..++||+|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIv 205 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKADIL 205 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence 79999999999876 699999997 57799999886421 3788999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+.+++- .++|..+. .|+|+++||++-
T Consensus 206 IsAvGk----p~~i~~~~---ik~gavVIDvGi 231 (278)
T PRK14172 206 VVAIGR----PKFIDEEY---VKEGAIVIDVGT 231 (278)
T ss_pred EEcCCC----cCccCHHH---cCCCcEEEEeec
Confidence 999883 45788776 579999999963
No 126
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.15 E-value=1e-05 Score=77.15 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=65.2
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh--hhhhhhc----CCCCCccccccCCHHHHhhcCCEEE
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--YGQFLKA----NGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
|||+|||+||+.+++.+.+.-+++|++............... |...... ......+.....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 699999999999999864445789887644322211111111 1100000 0000111122347999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.|. +.+.+..|.+.+.+|+++++|+-.-
T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECCC
Confidence 885 5778899999999999999988753
No 127
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=2.3e-05 Score=71.35 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcC--CcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~f--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
...+|||||.|++|+.+++.+++.. ..+ +++++++.....+.....| + .....+++++++++|+|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence 3568999999999999999874331 244 7778875333333222211 1 12235788999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
++++|. ...+.++ ++.-..++ +.++|.++=| ++.+.|.+.+..+
T Consensus 71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 999993 2333333 22212233 5688999766 5666777777554
No 128
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=9.9e-05 Score=69.27 Aligned_cols=169 Identities=21% Similarity=0.201 Sum_probs=105.0
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~---~--~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....+. ..+++|+.+.+. . ..|+++++.+ ..+++. +++..+-. | -+|.+.-.
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~~ 125 (297)
T PRK14186 56 ACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHPL 125 (297)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCChh
Confidence 3456688877665543 346777766553 1 4589999864 344433 44444322 2 11222111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
..|-...+.++ ....+|.-++.++- ..+.++.||++.|||-+. +|+.+|.
T Consensus 126 ---n~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla~ 176 (297)
T PRK14186 126 ---NLGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLAL 176 (297)
T ss_pred ---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 01111122222 33445555443331 123589999999999876 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..+.... .++++..++||+|+.+++- .+++..+.+
T Consensus 177 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~i--- 220 (297)
T PRK14186 177 ML-LAANATVTIAHSRT----------------------------QDLASITREADILVAAAGR----PNLIGAEMV--- 220 (297)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence 97 57799998875321 3788999999999999983 357887664
Q ss_pred CCCcEEEEcCCCc
Q 020301 263 KKEAILVNCSRGP 275 (328)
Q Consensus 263 k~ga~lIN~aRG~ 275 (328)
|+|+++||++--.
T Consensus 221 k~gavVIDvGin~ 233 (297)
T PRK14186 221 KPGAVVVDVGIHR 233 (297)
T ss_pred CCCCEEEEecccc
Confidence 7999999997544
No 129
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=8.8e-05 Score=69.61 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=63.7
Q ss_pred cccCCCEEEEEecCH-HHHHHHHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301 161 NLLKGQTVGVIGAGR-IGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (328)
.++.||++.|||-+. +|+.+|.+|.+. -|+.|..+.... .++++.+++
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ 206 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQ 206 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHh
Confidence 579999999999986 699999987432 478887765321 368899999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
||+|+.+++.. ++|..+.+ |+|+++||++--
T Consensus 207 ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~ 237 (295)
T PRK14174 207 ADILIAAIGKA----RFITADMV---KPGAVVIDVGIN 237 (295)
T ss_pred CCEEEEecCcc----CccCHHHc---CCCCEEEEeecc
Confidence 99999999632 77999887 899999999743
No 130
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.12 E-value=1.6e-05 Score=69.56 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=81.1
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCC--------ccccccCCHHHHhhc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE 236 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~ 236 (328)
+|+|||.|.||+.+|..++ ..|++|..||+++.... .++...+-......+... .......+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999975 67999999999876421 122222111111222111 1123357889988 9
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~ 300 (328)
||+|+=++|-..+.+.-+-++.=+.++++++|...+.+ +.-..|.+++.. .-+-.++=.|.
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~ 139 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN 139 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc
Confidence 99999999988888877777777788999988766443 566777777753 33455555553
No 131
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=9.5e-05 Score=69.03 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=103.7
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+.+....++ ..+++|+.+.+. ++.|+++++.+ ..+++. +++..+-. | -+|.+--.
T Consensus 55 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~~ 124 (286)
T PRK14184 55 ACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHPE 124 (286)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCHh
Confidence 4456688877665543 356777776553 15689999864 344443 33333222 2 11222110
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
..|-...+.++ ....++.-++.++ ++ .+.++.||++.|||-+. +|+.+|.
T Consensus 125 ---N~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla~ 175 (286)
T PRK14184 125 ---NMGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLAL 175 (286)
T ss_pred ---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence 01111122233 3344555433222 11 23579999999999987 6999999
Q ss_pred HHHhc----CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301 183 MMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (328)
Q Consensus 183 ~l~~~----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~ 258 (328)
+| .. -|++|..++... .++.+.+++||+|+.+++ ..++|..+.
T Consensus 176 lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~~ 222 (286)
T PRK14184 176 ML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTADM 222 (286)
T ss_pred HH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 97 45 689998876421 368899999999999985 356788877
Q ss_pred HhcCCCCcEEEEcC
Q 020301 259 LATMKKEAILVNCS 272 (328)
Q Consensus 259 ~~~mk~ga~lIN~a 272 (328)
+ |+|+++||++
T Consensus 223 v---k~GavVIDVG 233 (286)
T PRK14184 223 V---KPGAVVVDVG 233 (286)
T ss_pred c---CCCCEEEEee
Confidence 7 8999999997
No 132
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=0.00011 Score=68.39 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=104.4
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+.+....++ ..+++++.+.+. +..|+++++.+ ..+++. +++..+-. |=|- |+..+.+-
T Consensus 54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g 126 (282)
T PRK14166 54 ACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINVG 126 (282)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence 3456688877665543 356777776654 25689999864 344443 33433322 2111 22111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
... .| ..++ ....++.-++.++= + .+.++.||++.|||-+. +|+.+|.
T Consensus 127 ~l~-~g----~~~~-~~PcTp~avi~lL~----~---------------------y~i~l~Gk~vvVvGrS~iVGkPla~ 175 (282)
T PRK14166 127 YLN-LG----LESG-FLPCTPLGVMKLLK----A---------------------YEIDLEGKDAVIIGASNIVGRPMAT 175 (282)
T ss_pred HHh-cC----CCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence 110 01 0122 34455655543331 1 23579999999999986 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..++... .++++..++||+|+.++.- .+++..+. .
T Consensus 176 lL-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~---v 219 (282)
T PRK14166 176 ML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---V 219 (282)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---c
Confidence 97 56799999876431 3688999999999999883 46788876 4
Q ss_pred CCCcEEEEcC
Q 020301 263 KKEAILVNCS 272 (328)
Q Consensus 263 k~ga~lIN~a 272 (328)
|+|+++||++
T Consensus 220 k~GavVIDvG 229 (282)
T PRK14166 220 KEGVIVVDVG 229 (282)
T ss_pred CCCCEEEEec
Confidence 7999999998
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.08 E-value=2e-05 Score=73.07 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=69.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.++||||+|.||+.+++.+.+. .+++ +.++|+++... +++.+.| + ...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~-------~-----~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT-------G-----AKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc-------C-----CeeECCHHHHhcCCCEEEEc
Confidence 3799999999999999987432 3676 44688876432 2211111 1 12346899999999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~ 290 (328)
.| ++...-+ ....++.|.-++..+-|.+.|. +.|.++.+++.
T Consensus 69 a~--~~~~~~~---~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 AS--VNAVEEV---VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CC--hHHHHHH---HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 87 3333222 2233455666777788888764 46777766654
No 134
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=0.00013 Score=67.94 Aligned_cols=168 Identities=16% Similarity=0.230 Sum_probs=104.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccCh
Q 020301 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (328)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~ 102 (328)
+..++.|.+.+....++ ..+++|+.+.+. +..|+++++.+ ..+++ .+++..+-. |=|- |+..+.+
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 128 (284)
T PRK14177 56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF 128 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence 34456788877665433 346777766553 25689999864 23443 344443222 2110 2111111
Q ss_pred hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (328)
Q Consensus 103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA 181 (328)
|-...+.+. ....++.-++.++ ++ .+.++.||++.|||-+. +|+.+|
T Consensus 129 ------g~l~~g~~~-~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 129 ------GKLSMGVET-YLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred ------HHHHcCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 111122232 3344565444322 11 13579999999999986 699999
Q ss_pred HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+| ..-|+.|+.++... .++.+..++||+|+.++.- .+++..+.+
T Consensus 177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~i-- 221 (284)
T PRK14177 177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADWI-- 221 (284)
T ss_pred HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence 997 57799999886421 3788999999999999873 456877664
Q ss_pred CCCCcEEEEcCC
Q 020301 262 MKKEAILVNCSR 273 (328)
Q Consensus 262 mk~ga~lIN~aR 273 (328)
|+|+++||++-
T Consensus 222 -k~gavVIDvGi 232 (284)
T PRK14177 222 -SEGAVLLDAGY 232 (284)
T ss_pred -CCCCEEEEecC
Confidence 79999999974
No 135
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.08 E-value=0.00015 Score=68.12 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=64.5
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|||-+. +|+.+|.+| ..-|+.|+.++... .++++.+++||
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~AD 212 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSRT----------------------------PDPESIVREAD 212 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 3589999999999986 699999997 56799999885421 36889999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+|+.++.- .+++..+.+ |+|+++||++-
T Consensus 213 Ivv~AvGk----~~~i~~~~v---k~gavVIDvGi 240 (299)
T PLN02516 213 IVIAAAGQ----AMMIKGDWI---KPGAAVIDVGT 240 (299)
T ss_pred EEEEcCCC----cCccCHHHc---CCCCEEEEeec
Confidence 99999873 378888765 79999999974
No 136
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=0.00049 Score=64.12 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=106.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+.+..++ ..+++++.+.+. ++.|+++++.+ ..+++. +++.++-. | -+|.+..
T Consensus 54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~- 122 (282)
T PRK14182 54 DCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP- 122 (282)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH-
Confidence 3456688887765543 346777776653 25689999864 344443 44443322 2 1222211
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
...|-...+.++.....+|.-++.++ ++ .+.++.||++.|||-+. +|+.+|.
T Consensus 123 --~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla~ 175 (282)
T PRK14182 123 --FNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVDPKGKRALVVGRSNIVGKPMAM 175 (282)
T ss_pred --hHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence 11121222333322344555544333 11 13579999999999986 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..++... .++++..++||+|+.+++- .++|..+.+
T Consensus 176 lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~AvGk----~~~i~~~~i--- 219 (282)
T PRK14182 176 ML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAIGK----AELVKGAWV--- 219 (282)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---
Confidence 97 56789999876431 3688999999999999873 567888765
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 220 k~gaiVIDvGin 231 (282)
T PRK14182 220 KEGAVVIDVGMN 231 (282)
T ss_pred CCCCEEEEeece
Confidence 699999999743
No 137
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=0.00017 Score=67.15 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=63.9
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|||-+. +|+.+|.+| ..-|+.|..++... .++.+..++||
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~AD 203 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKAD 203 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcC
Confidence 3579999999999876 699999997 56799999876421 37888999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+|+.+++- .++|..+. .|+|+++||++-
T Consensus 204 IvIsAvGk----p~~i~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 204 ILIVAVGK----PNFITADM---VKEGAVVIDVGI 231 (282)
T ss_pred EEEEccCC----cCcCCHHH---cCCCcEEEEecc
Confidence 99999883 45687766 479999999974
No 138
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00016 Score=67.72 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=64.5
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|||-+. +|+.+|.+| ..-|+.|..++... .++.+.+++||
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~AD 205 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKAD 205 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence 3579999999999986 699999997 57899999876421 37889999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+|+.++.- .+++..+.+ |+|+++||++-
T Consensus 206 IvVsAvGk----p~~i~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 206 ILVAAVGI----PNFVKYSWI---KKGAIVIDVGI 233 (294)
T ss_pred EEEEccCC----cCccCHHHc---CCCCEEEEecc
Confidence 99999883 456887775 69999999964
No 139
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.05 E-value=0.00012 Score=69.68 Aligned_cols=170 Identities=15% Similarity=0.268 Sum_probs=105.9
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++|+.+.+.. +.|+++++.+ ..+++. +++...-. |=|- |+..+.+-
T Consensus 110 ~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~G 182 (345)
T PLN02897 110 ACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNVG 182 (345)
T ss_pred HHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHHH
Confidence 3456688877665543 3467777766531 5689999864 345554 33333222 2111 22111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
.....| +.++ ....++.-++.++- ..+.++.||++.|||-+. +|+.+|.
T Consensus 183 ~L~~~~----~~~~-~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla~ 232 (345)
T PLN02897 183 NLAMRG----REPL-FVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMSL 232 (345)
T ss_pred HHhcCC----CCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHHH
Confidence 111000 0122 34555665554441 123579999999999987 6999999
Q ss_pred HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (328)
Q Consensus 183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m 262 (328)
+| ..-|+.|..+.... .++++..++||+|+.++.- .+++..+.+
T Consensus 233 LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~v--- 276 (345)
T PLN02897 233 LL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSWL--- 276 (345)
T ss_pred HH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence 97 56799998875321 3688999999999999883 457887765
Q ss_pred CCCcEEEEcCCC
Q 020301 263 KKEAILVNCSRG 274 (328)
Q Consensus 263 k~ga~lIN~aRG 274 (328)
|+|+++||++--
T Consensus 277 k~GavVIDVGin 288 (345)
T PLN02897 277 KPGAVVIDVGTT 288 (345)
T ss_pred CCCCEEEEcccc
Confidence 799999999743
No 140
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.04 E-value=0.00021 Score=68.52 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=63.9
Q ss_pred cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.++.||++.|||-+. +|+.+|.+| ..-|+.|..+... ..++++.+++||+
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADI 277 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREADI 277 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence 579999999999986 699999997 5779999987532 1478899999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+.++.- .+++..+.+ |+|+++||++-
T Consensus 278 VIsAvGk----p~~i~~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 278 IISAVGQ----PNMVRGSWI---KPGAVVIDVGI 304 (364)
T ss_pred EEEcCCC----cCcCCHHHc---CCCCEEEeccc
Confidence 9999873 467887765 79999999974
No 141
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.04 E-value=1.7e-05 Score=78.25 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=72.8
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ++....+ +.. .....++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence 47899999999999999999997 5789 7899999986532 2222211 111 11224677889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCC----CCcEEEEcCCCcccC
Q 020301 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID 278 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk----~ga~lIN~aRG~~vd 278 (328)
+.|.+ .+..+++.+.++.+. ...++|+.+...=||
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 99965 556788988887752 245899998644344
No 142
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.03 E-value=7.9e-06 Score=67.41 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=58.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
...+|||||.|++|..+++.| +.-|..|.++ +|+.... ++... . .......++++++..||++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa-~~a~~----------~--~~~~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASA-ERAAA----------F--IGAGAILDLEEILRDADLVFI 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HH-HHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccc-ccccc----------c--cccccccccccccccCCEEEE
Confidence 345899999999999999997 6779998765 5554221 11100 0 111234678899999999999
Q ss_pred cCCCChhhhccccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 243 HPVLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
++|.. .-.. +-++.-.. .++|.+++=+| |. ..-+-|.-+-+.|.
T Consensus 75 avpDd-aI~~-va~~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 75 AVPDD-AIAE-VAEQLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA 120 (127)
T ss_dssp -S-CC-HHHH-HHHHHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred EechH-HHHH-HHHHHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence 99944 2222 32333333 67899999884 22 33444444444444
No 143
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=0.00021 Score=66.98 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=103.6
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
..++.|.+.+....++ ..+++|+.+.+. +..|+++++.+ ..+++ .+++..+-. |=|- |+..+++
T Consensus 55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~- 126 (293)
T PRK14185 55 ACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINV- 126 (293)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhH-
Confidence 4456688877665543 346777775543 15689999864 34444 344443322 2110 2211111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++= ..+.++.||++.|||-+. +|+.+|.
T Consensus 127 -----g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla~ 175 (293)
T PRK14185 127 -----GRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMAQ 175 (293)
T ss_pred -----HHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 111112233 34555655553332 113579999999999987 6999999
Q ss_pred HHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHH
Q 020301 183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (328)
Q Consensus 183 ~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~ 259 (328)
+|.+. +++.|..+... ..++.+..++||+|+.+++- .++|..+.
T Consensus 176 lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~- 222 (293)
T PRK14185 176 LMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM- 222 (293)
T ss_pred HHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 97432 37999887532 14788999999999999883 45677765
Q ss_pred hcCCCCcEEEEcCC
Q 020301 260 ATMKKEAILVNCSR 273 (328)
Q Consensus 260 ~~mk~ga~lIN~aR 273 (328)
.|+|+++||++-
T Consensus 223 --vk~gavVIDvGi 234 (293)
T PRK14185 223 --VKEGAVVIDVGT 234 (293)
T ss_pred --cCCCCEEEEecC
Confidence 579999999974
No 144
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=0.00021 Score=66.61 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=105.5
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+++....++ ..+++|+.+.+.. ..|+++++.+ ..++.. +++..+-. |=|- |+..+.+
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~- 127 (284)
T PRK14193 56 DCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL- 127 (284)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh-
Confidence 3446688877665533 3567777765532 4589999864 344443 44444322 2110 1111111
Q ss_pred HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (328)
Q Consensus 104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~ 182 (328)
|-...+.++ ....++.-++.++= ..+.++.||++.|||-+. +|+.+|.
T Consensus 128 -----g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla~ 176 (284)
T PRK14193 128 -----GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIGL 176 (284)
T ss_pred -----hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence 111122233 23455555543331 123589999999999875 7999999
Q ss_pred HHHhc--CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301 183 MMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (328)
Q Consensus 183 ~l~~~--fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~ 260 (328)
+|. . -++.|..+.... .++.+.+++||+|+.++.- .++|..+.+
T Consensus 177 lL~-~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~AvGk----p~~i~~~~i- 222 (284)
T PRK14193 177 LLT-RRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAAGV----AHLVTADMV- 222 (284)
T ss_pred HHh-hccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEecCC----cCccCHHHc-
Confidence 974 4 689998876421 3788999999999999883 357887765
Q ss_pred cCCCCcEEEEcCCCc
Q 020301 261 TMKKEAILVNCSRGP 275 (328)
Q Consensus 261 ~mk~ga~lIN~aRG~ 275 (328)
|+|+++||++.-.
T Consensus 223 --k~GavVIDvGin~ 235 (284)
T PRK14193 223 --KPGAAVLDVGVSR 235 (284)
T ss_pred --CCCCEEEEccccc
Confidence 7999999998544
No 145
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=0.00024 Score=66.74 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=103.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (328)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~ 102 (328)
+..++.|.+++....++ ..+++|+...+.. ..++++++.+ ..+++. +++.++-. |=|- |+..+.+
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 126 (297)
T PRK14167 54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENV 126 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 34456788887765543 3466777665531 4589999864 344443 44433222 2110 1111111
Q ss_pred hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (328)
Q Consensus 103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA 181 (328)
|-...+.++ ....++.-++.++= ..+.++.||++.|||-+. +|+.+|
T Consensus 127 ------g~l~~g~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 174 (297)
T PRK14167 127 ------GRLVAGDAR-FKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA 174 (297)
T ss_pred ------HHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence 111112222 34455655543331 123579999999999986 699999
Q ss_pred HHHHhcC---CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301 182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (328)
Q Consensus 182 ~~l~~~f---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~ 258 (328)
.+|.+.+ ++.|..+... ..++++..++||+|+.++-- .+++..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (297)
T PRK14167 175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM 222 (297)
T ss_pred HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 9975443 8999887532 13788999999999998763 35788766
Q ss_pred HhcCCCCcEEEEcCC
Q 020301 259 LATMKKEAILVNCSR 273 (328)
Q Consensus 259 ~~~mk~ga~lIN~aR 273 (328)
.|+|+++||++-
T Consensus 223 ---ik~gaiVIDvGi 234 (297)
T PRK14167 223 ---LSEGATVIDVGI 234 (297)
T ss_pred ---cCCCCEEEEccc
Confidence 579999999984
No 146
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=0.00094 Score=62.42 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=111.6
Q ss_pred CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHH
Q 020301 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA 81 (328)
Q Consensus 15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~ 81 (328)
+.-++...+.+... + .+.-++.|.+.+....++ ..+++|+.+.+. +..|+++++.+ ..+++. +++.
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~ 106 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQA 106 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhc
Confidence 34444455554432 1 233456688877665543 346777776653 25689999864 344443 4444
Q ss_pred hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (328)
Q Consensus 82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~ 161 (328)
++-. |=|- |+..+.+ |-...+........++.-++.++ ++ .+.
T Consensus 107 I~p~--KDVD----Gl~p~n~------g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i 149 (287)
T PRK14181 107 ISPD--KDVD----GLHPVNM------GKLLLGETDGFIPCTPAGIIELL----KY---------------------YEI 149 (287)
T ss_pred cCcc--cCcc----cCChhhH------HHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence 3322 2110 1111111 11111211123444555544332 11 135
Q ss_pred ccCCCEEEEEecCH-HHHHHHHHHHhcC----CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301 162 LLKGQTVGVIGAGR-IGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (328)
Q Consensus 162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (328)
++.||++.|||-+. +|+.+|.+|. .- ++.|..+... ..++++.+++
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ 200 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKT 200 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhh
Confidence 79999999999986 6999999974 44 7899887532 1478899999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
||+|+.+++- .+++..+.+ |+|+++||++--.
T Consensus 201 ADIvV~AvG~----p~~i~~~~i---k~GavVIDvGin~ 232 (287)
T PRK14181 201 ADIIIAAIGV----PLFIKEEMI---AEKAVIVDVGTSR 232 (287)
T ss_pred CCEEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence 9999999873 367888765 6999999997543
No 147
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.00 E-value=2.8e-05 Score=66.63 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=57.4
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|||-+. +|+.+|.+| ..-|+.|..++.+. .++++.+++||
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD 81 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence 3579999999999996 999999997 67899999876432 47889999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
+|+.++.- .++|..+. +|+|+++||++.-..
T Consensus 82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence 99999873 55676654 589999999976554
No 148
>PLN00203 glutamyl-tRNA reductase
Probab=97.98 E-value=3.5e-05 Score=77.89 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=72.4
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.+++++|||.|.||+.+++.| ...|+ +|++++|+.... +.+...|+ +. ........++.+.+.+||+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g~-~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------DV-EIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------CC-ceEeecHhhHHHHHhcCCEE
Confidence 37899999999999999999997 57887 799999987542 22222221 11 11112234677889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCC-------cEEEEcCCCc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRGP 275 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~g-------a~lIN~aRG~ 275 (328)
+.+.| ....+|.++.++.++++ -+|||.|=..
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 99865 55778899999887432 4888887543
No 149
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=72.04 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|||.|. .|+.+|..| ...|++|..+++.. .++.+.+++||
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD 204 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD 204 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence 3579999999999998 999999997 57899999988621 36777889999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
+|+.+++ .+. ++..+. +|+|++++|++-.
T Consensus 205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEe
Confidence 9999996 222 677655 6899999999743
No 150
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.97 E-value=6.5e-05 Score=69.37 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=66.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.+++|||+|.||+.+|+.+. .-| .+|.+|||+.... +...+.| + .....+.++++.+||+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence 47999999999999999874 556 6899999986432 2221111 1 1123577888999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
|+|. ...+.++. .....+ +..+|.+.-|- ..+.|.+.+.
T Consensus 69 ~v~~-~~~~~v~~-~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVLS-ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHHH-HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9982 33444332 222223 45777776553 6677777665
No 151
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.95 E-value=0.0001 Score=61.82 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=65.6
Q ss_pred ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.++.||++.|+|-+. +|+.+|.+| ...|+.|..++.+. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 4589999999999876 688999987 57899999887431 36888999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
+|+.+++.. ++|+.+. +|||+++||++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999998843 5688766 67999999998655
No 152
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.94 E-value=4.3e-05 Score=76.18 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEcCCCChhhhc
Q 020301 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (328)
Q Consensus 176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~~plt~~t~~ 252 (328)
||+.+|++|+ .-|.+|.+|||++... +++.+. .+. ..+.....+++++++. +|+|++++|..+.+..
T Consensus 1 MG~~mA~nL~-~~G~~V~v~nrt~~~~-~~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIA-SHGYTVAVYNRTPEKT-DEFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 6899999984 6799999999997643 222211 010 0123345789998875 8999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
++ ...+..|.+|.++||.+....-|...+.+.+++..+.-...=|.-.++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 568899999999999999999999999999988777655554555544
No 153
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.92 E-value=5.8e-05 Score=71.63 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=65.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+.|++++|||.|.||+.+++.+ +..| .+|.++||++... .+....| +. ......++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GG---NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence 6899999999999999999997 4555 6899999986532 2222222 11 1111235678889999999
Q ss_pred EcCCCChhhhccccHHHHhcC-CCCcEEEEcCCCc
Q 020301 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGP 275 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~ 275 (328)
.+.|.. ++..++ +..++.. +++.++||.+...
T Consensus 244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence 999843 332222 3333333 3678999998643
No 154
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=0.00038 Score=65.37 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=102.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (328)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~ 103 (328)
.-++.|.+.+....++ ..+++|+.+.+.. ..|+++++.+ ..+++. +++..+-. |=|- |+..+.+
T Consensus 57 ~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~- 128 (297)
T PRK14168 57 TAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KDVD----GFHPVNV- 128 (297)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhH-
Confidence 3456688877655433 3477777765532 5689999864 344443 33333222 1110 1111111
Q ss_pred HHHhCCceEecC-CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301 104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (328)
Q Consensus 104 ~~~~~gI~v~n~-p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA 181 (328)
|-...+. .......++.-++.++- ..+.++.||++.|||-+. +|+.+|
T Consensus 129 -----g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 178 (297)
T PRK14168 129 -----GRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPIA 178 (297)
T ss_pred -----HHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHHH
Confidence 1111111 11234455555543332 123589999999999876 799999
Q ss_pred HHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301 182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (328)
Q Consensus 182 ~~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~ 258 (328)
.+|.+. .++.|..+... ..++.+.+++||+|+.++.- .+++..+.
T Consensus 179 ~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~ 226 (297)
T PRK14168 179 NMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPEW 226 (297)
T ss_pred HHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 997532 27899876532 13688899999999999863 45688766
Q ss_pred HhcCCCCcEEEEcCC
Q 020301 259 LATMKKEAILVNCSR 273 (328)
Q Consensus 259 ~~~mk~ga~lIN~aR 273 (328)
+ |+|+++||++-
T Consensus 227 i---k~gavVIDvGi 238 (297)
T PRK14168 227 I---KPGATVIDVGV 238 (297)
T ss_pred c---CCCCEEEecCC
Confidence 4 79999999974
No 155
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.91 E-value=0.0001 Score=68.19 Aligned_cols=107 Identities=24% Similarity=0.343 Sum_probs=78.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+++||||+|+||+.++.-+. .-| -+|++.+|+.+... ...+.|+ . ....+.+++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~-----~~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEYG-------V-----VTTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHcC-------C-----cccCcHHHHHhhCCEEE
Confidence 47999999999999999874 445 68999999876543 3333442 1 11467789999999999
Q ss_pred EcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga 294 (328)
+++. |+ .-++.++.+| ++.++|.++=| |..+.|.++|.+-++..+
T Consensus 68 LavK--Pq----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vvR~ 115 (266)
T COG0345 68 LAVK--PQ----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVVRV 115 (266)
T ss_pred EEeC--hH----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceEEe
Confidence 9997 53 2356666666 68999999877 677888888864444443
No 156
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.91 E-value=9.6e-05 Score=56.52 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=53.2
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 357899999999999999999997 456 567776541 99
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
++.+.+- .+.+.++....|++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9988773 3445566788899999999874
No 157
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.89 E-value=5.5e-05 Score=72.27 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=66.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-+++||||.|.+|+..++.+...+ .-+|.+||++.+.. +.+.+.+ .+.+ .....+.+.++++++||+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~~g---~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SDYE---VPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence 478999999999999777654333 35899999987643 2222221 1111 1123357899999999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|. +.-++..+. +|||+.+.+++.
T Consensus 200 T~s---~~P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 200 TPS---RKPVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCC
Confidence 874 456676654 489999998874
No 158
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.89 E-value=4.9e-05 Score=75.19 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=70.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|++++|+|.|.||+.+++.+ ...|+ +|++++|++... ..+...+ +.. .....++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence 47899999999999999999997 68897 899999986432 2222222 111 11224567788999999
Q ss_pred EEcCCCChhhhccccHHHHhcC-----CCCcEEEEcCCCc
Q 020301 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP 275 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~m-----k~ga~lIN~aRG~ 275 (328)
+.+.| ....++..+.++.+ +.+.++|+.+-..
T Consensus 247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 99976 44556778777664 3567899987533
No 159
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.87 E-value=8.4e-05 Score=71.03 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=74.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCC----CccccccCCHHHHhhcCCEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~ell~~aDiV 240 (328)
++|+|||.|.||..+|..|+ ..|.+|.+||+.... +. ....+...... +.. +.......+. +.++.+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARIG--DE-LRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHHH--HH-HHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 47999999999999999984 669999999986421 11 11111000000 000 0001112344 567899999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 293 (328)
++++|. ++....+ +.....++++.++|.+.-| +-..+.+.+.+.+.++..
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 999984 5555554 4455667889999888654 445566777776655443
No 160
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.86 E-value=9e-05 Score=65.84 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=65.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++++|+|.|+||..+|++++ ..|.+|++-+++.++..+...+.. + +. ....+.++..+.+|+|++.+|
T Consensus 2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~l-------~--~~--i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAAL-------G--PL--ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHhh-------c--cc--cccCChHHHHhcCCEEEEecc
Confidence 57999999999999999984 779999988766554333211111 1 11 123578899999999999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
... ... +.++...... |.++|++.-.
T Consensus 70 ~~a-~~~-v~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FEA-IPD-VLAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHH-HHh-HHHHHHHHhC-CeEEEecCCC
Confidence 532 233 3355665565 8899988653
No 161
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.86 E-value=9.6e-05 Score=70.26 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..++++|||.|.+|+.+++.+...++ -+|.+|+|++.. .+++.+.+ ...+. ......++++++++||+|++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g~---~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQGF---DAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcCC---ceEEeCCHHHHHhcCCEEEE
Confidence 46789999999999999986543355 579999998754 23333322 11111 12234688999999999987
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
+.|.+ ..++..+ .++||+ +||.
T Consensus 196 aT~s~---~pvl~~~---~l~~g~-~i~~ 217 (314)
T PRK06141 196 ATLST---EPLVRGE---WLKPGT-HLDL 217 (314)
T ss_pred eeCCC---CCEecHH---HcCCCC-EEEe
Confidence 77643 5666654 468999 4554
No 162
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.82 E-value=5.6e-05 Score=70.30 Aligned_cols=96 Identities=27% Similarity=0.347 Sum_probs=68.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
-|.||||+|||||+-|..=|..| +--|.+|++--|.....-+. +.++|. .+.+.+|+.++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dGf------~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDGF------KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcCC------EeecHHHHhhcCCEEE
Confidence 58999999999999999999997 68888877654433221111 122232 3468999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
+.+|.. .-..++.++.-..||.|+.| -.|.|
T Consensus 80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 80 ILLPDE-QQKEVYEKEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred EeCchh-hHHHHHHHHhhhhhcCCceE-Eeccc
Confidence 999943 33455666777788888743 44444
No 163
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.80 E-value=9.9e-05 Score=64.85 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=75.8
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
++|+|||+|.+|..+|..|+ ..|.+|++||.++... +...... .+.+++ ...........+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~-~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKE-NVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHH-HHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcc-ccccccchhhhhhhhhhhcc
Confidence 47999999999999999985 7899999999986531 1111000 000000 00001122335778889999
Q ss_pred CEEEEcCCCChhhh-ccc--------cHHHHhcCCCCcEEEEcCCCcccCHHHH-HHHHHcCCccEEEEe-CCCCCCCCC
Q 020301 238 DVISLHPVLDKTTY-HLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK 306 (328)
Q Consensus 238 DiV~l~~plt~~t~-~li--------~~~~~~~mk~ga~lIN~aRG~~vde~aL-~~aL~~g~i~gaalD-V~~~EP~~~ 306 (328)
|++++|+| ||... +-. -+...+.++++.++|.-|.-.+=-.+.+ ...|++..-.+.-++ +|.+|=+.+
T Consensus 78 dv~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~ 156 (185)
T PF03721_consen 78 DVVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE 156 (185)
T ss_dssp SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred ceEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence 99999999 44322 222 2455667889999999999776555533 344443221111111 234554322
Q ss_pred ----CCcccCCCeEE
Q 020301 307 ----PGLSEMKNAIV 317 (328)
Q Consensus 307 ----~~L~~~~nvil 317 (328)
..+...|+|++
T Consensus 157 G~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 157 GRAIEDFRNPPRVVG 171 (185)
T ss_dssp TSHHHHHHSSSEEEE
T ss_pred CCcchhccCCCEEEE
Confidence 24566666664
No 164
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=0.00012 Score=68.62 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=73.1
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
+++|+|.|.||..+|..|+ .-|.+|..|+| .. ..+... ..+-..... +..........+.+++...+|+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALR-ERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHH-hCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 6999999999999999985 56899999998 32 222211 111000000 0000011113456777789999999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
. .++...+ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 4 4444444 3333445678888877665 44567777777665544
No 165
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.78 E-value=8.9e-05 Score=68.50 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=63.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+|||||+|+||+++++.+.+ -+ -++++++|+.... ......+..+++.+||+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence 3589999999999999998753 33 3599998864320 011235677888999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
++|+| ...++.++. +....++++ .+|.+.-| +..+.+.+.+.
T Consensus 62 ilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 62 VLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred EEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 99998 345555553 333345554 45555444 45666666654
No 166
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.78 E-value=0.00013 Score=69.28 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=60.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+++||||.|..|+.-++.++.-++. +|.+|+|++.. .+++.+. ++.. ......+.+.++++++||+|+.+.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~~---~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRDL---GVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHCC---CTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hccc---cccceeccchhhhcccCCEEEEcc
Confidence 5899999999999999887655665 79999998743 3333332 2221 233345678999999999999997
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
|.+..+ -+++.+ .+|||+.++.++....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 755433 777766 4679999999986543
No 167
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.78 E-value=0.00016 Score=68.49 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=67.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
...++++|||.|.+|+..++.+...++. +|.+|+|++.. .+++.+.+ ...+ .... ..+.++++++||+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence 3567999999999999999987544664 79999998754 33333332 1111 1111 468899999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.+.|.+ .-+|.. .+|||+.++.++.
T Consensus 194 taT~s~---~Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 194 TATTSR---TPVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred EccCCC---CceeCc----cCCCCCEEEecCC
Confidence 998743 466654 2699999999873
No 168
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.78 E-value=0.00017 Score=64.81 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=62.3
Q ss_pred EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
+|+||| .|.||+.+|+.|+ ..|.+|.+++|+++.. +.....+.......+.. .. ....+..+.++++|+|++++|
T Consensus 2 kI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~~-~~-~~~~~~~ea~~~aDvVilavp 77 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGSD-IK-VTGADNAEAAKRADVVILAVP 77 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCCC-ce-EEEeChHHHHhcCCEEEEECC
Confidence 699997 8999999999974 6689999999876432 22111110000011110 00 112366788999999999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
. .....++ ++.-..++ +.++|+++-|-
T Consensus 78 ~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 78 W-DHVLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred H-HHHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 3 3344433 22222333 58999997664
No 169
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00015 Score=65.51 Aligned_cols=116 Identities=24% Similarity=0.331 Sum_probs=87.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (328)
+++|.||+|+||..++++| ..-|-+|++||+++....+ +...+. ....+++++ |..--+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~---------~~~~ga-----~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEE---------LKDEGA-----TGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHhcCC-----ccccCHHHHHHhcCCCcEEEE
Confidence 3689999999999999997 5779999999999865322 112232 223566665 566789999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~ 299 (328)
.+|...-|..+| ++.-..|.+|-++|+-+-..--|....++.|++..|. -+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 999887777766 5666778899999999887777888888888887664 45653
No 170
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.75 E-value=0.0002 Score=67.60 Aligned_cols=134 Identities=12% Similarity=0.165 Sum_probs=92.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~~ 244 (328)
.+|||||+|++|+-+|+.+ -.-|..|+.+||..-....+ .| +...++.+.++++ ++|+|.+|+
T Consensus 53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlct 116 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLCT 116 (480)
T ss_pred eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEEe
Confidence 4799999999999999997 47799999999975332221 12 2234567777764 589999987
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--C---CCCcccCCCeEEcC
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M---KPGLSEMKNAIVVP 319 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~---~~~L~~~~nvilTP 319 (328)
. -..+..++-.--|+++|.|++++++-.-....-+++.+-|-+.- |....-|. | ++....+|=|+.--
T Consensus 117 s-ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdf------DIlctHpmfGPksvnh~wqglpfVydkv 189 (480)
T KOG2380|consen 117 S-ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDF------DILCTHPMFGPKSVNHEWQGLPFVYDKV 189 (480)
T ss_pred h-hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcccc------ceEeecCCcCCCcCCCccccCceEEEEe
Confidence 6 34556666666678899999999998888888888888887642 33333332 1 23455566665544
Q ss_pred CCC
Q 020301 320 HIA 322 (328)
Q Consensus 320 Hia 322 (328)
.++
T Consensus 190 Rig 192 (480)
T KOG2380|consen 190 RIG 192 (480)
T ss_pred ecc
Confidence 333
No 171
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.71 E-value=0.00024 Score=62.54 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=68.5
Q ss_pred cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhcC
Q 020301 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA 237 (328)
Q Consensus 161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~a 237 (328)
..+.++++.|+|. |.+|+.+++.++ ..|.+|..++|+... .++..+.+.+ ..+.. ........++.+.++++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFGEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcCCcEEEeeCCCHHHHHHHHhcC
Confidence 4678999999996 999999999974 678999999988642 2322221110 00110 00011123345788999
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde 279 (328)
|+|+.+.|....+ .+.. -...+++.+++|+.+..-++.
T Consensus 99 diVi~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 99 DVVFAAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CEEEECCCCCcee--chhh--hcccCceeEEEEccCCCCCCc
Confidence 9999998855431 1111 113456889999888776544
No 172
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.66 E-value=0.00023 Score=68.25 Aligned_cols=101 Identities=29% Similarity=0.358 Sum_probs=71.5
Q ss_pred ccccCCCEEEEEec-CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
+.++.|+++.|+|. |.||+.+++.|+...| .+++.++|+... ......++ + .....++++.+.++
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~a 216 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPEA 216 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHccC
Confidence 45799999999999 8999999999853456 489999987542 22211111 0 01234788999999
Q ss_pred CEEEEcCCCChhhhc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301 238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 238 DiV~l~~plt~~t~~-li~~~~~~~mk~ga~lIN~aRG~~vde 279 (328)
|+|+.+.. .+.. +++.+.+ +++.++|+.|+..=||.
T Consensus 217 DiVv~~ts---~~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 217 DIVVWVAS---MPKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CEEEECCc---CCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 99886643 2234 3777654 79999999999877775
No 173
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.65 E-value=0.00039 Score=61.25 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCC----HHH
Q 020301 159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASS----MDE 232 (328)
Q Consensus 159 ~~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----l~e 232 (328)
.+.++.||++.|||-+. +|+.+|.+| ..-|+.|+.+|.+.-.. ...+........ ..+ +.+
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~------------~~~~~~~~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV------------FTRGESIRHEKHHVTDEEAMTLD 122 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc------------cccccccccccccccchhhHHHH
Confidence 36789999999999987 699999997 56799999997532110 000000000000 012 789
Q ss_pred HhhcCCEEEEcCCCChhhhcc-ccHHHHhcCCCCcEEEEcCC
Q 020301 233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (328)
Q Consensus 233 ll~~aDiV~l~~plt~~t~~l-i~~~~~~~mk~ga~lIN~aR 273 (328)
.+++||+|+.+++- .++ +..+.+ |+|+++||++-
T Consensus 123 ~~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence 99999999999983 344 777664 79999999973
No 174
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00038 Score=66.48 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=65.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..++++|||.|.+|+..++.++...+. +|.+|||++.. .+++.+.+ .... ......+.++++++++||+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence 467899999999999988775444565 78999998754 23333222 1110 1112235788999999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+.|.. .-++. +.+|+|+.++.++.
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCC
Confidence 98844 44554 45689999988854
No 175
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.63 E-value=0.00057 Score=63.96 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=72.6
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl 246 (328)
+++|||.|.||..+|..|+ .-|.+|..++++.+. .+.... .+... ..+..........+.+++ +.+|+|++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNE-NGLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHH-cCCcc-cCCceeecccCCCChhHc-CCCCEEEEeccc
Confidence 6999999999999999984 568999999986432 121111 01000 011100001123456665 899999999993
Q ss_pred ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (328)
Q Consensus 247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 293 (328)
.++..++ +.....+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus 77 -~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 77 -YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred -ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 4555544 3344456677888888776 334566776666555543
No 176
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.63 E-value=0.00027 Score=65.99 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=75.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.++++.|+|.|.+|+.+++.| ...| .+|++++|+.... ++..+.+.. .. .... ..++.+.+..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFGA----LG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence 57889999999999999999997 5889 7999999986532 222222210 00 0111 12445778899999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
+.+.|.......-...-.++.++++++++++.=.+ ..+.=|.+|=+.|.
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G~ 238 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQGA 238 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCcC
Confidence 99999654321111112235567889999996544 34544555555453
No 177
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.60 E-value=0.0011 Score=66.46 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=88.7
Q ss_pred CEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-------ccccccCCHHHHhhcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-------VTWKRASSMDEVLREA 237 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ell~~a 237 (328)
.+|+|||+|.+|..+|-.|++ +.|.+|++||.++.. .+........ ..+.+... ......++.++.++.|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~-~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLP-IYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCc-cCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 479999999999999998853 457999999987653 2221000000 00001000 0122234677889999
Q ss_pred CEEEEcCCCChhh------------hccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe-CCCCC
Q 020301 238 DVISLHPVLDKTT------------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE 302 (328)
Q Consensus 238 DiV~l~~plt~~t------------~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD-V~~~E 302 (328)
|++++|+| ||.. ..+. -+..-+.+++|.++|.-|.-.+=-.+.+.+.|.+.. .|.-.. +|.+|
T Consensus 80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE 157 (473)
T PLN02353 80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE 157 (473)
T ss_pred CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence 99999997 3321 1222 234556678999999988866655667777777521 121111 24566
Q ss_pred CCCC----CCcccCCCeEE
Q 020301 303 PYMK----PGLSEMKNAIV 317 (328)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (328)
=+.+ ..+...|.|++
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 5432 35777888874
No 178
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.60 E-value=0.00036 Score=67.07 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=67.3
Q ss_pred EEEEEecCHHHHHHHHHHHh-c------CCcEEEEEcCCc---hhHHHHHHhhhhhhhhcC----CC-CCccccccCCHH
Q 020301 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----GE-QPVTWKRASSMD 231 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~-~------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~ 231 (328)
+|+|||.|+.|.++|..++. + |+.+|..|.+.. .....+... ...+.. +. .+.......+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in---~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN---TTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH---hcCCCccccCCCcCCCCeEEECCHH
Confidence 48999999999999998753 2 448999998732 111111111 100000 11 011122236899
Q ss_pred HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (328)
Q Consensus 232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd 278 (328)
++++.||+|++++| +...+.++ +..-..++++..+|+++-|=-.+
T Consensus 78 eal~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 78 EAAKGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHhcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999999 33344433 44445678899999999884443
No 179
>PRK06046 alanine dehydrogenase; Validated
Probab=97.56 E-value=0.00051 Score=65.62 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-+++||||.|.+|+..++.++...+. +|.+|||+.... +++.+.+. +. .+.....+.+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence 36899999999999999987544565 577899987532 23322221 10 0111223568899997 9999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.|. +.-+|..+. +|+|+.+..++
T Consensus 201 Tps---~~P~~~~~~---l~~g~hV~~iG 223 (326)
T PRK06046 201 TPS---RKPVVKAEW---IKEGTHINAIG 223 (326)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecC
Confidence 884 346777765 48999988886
No 180
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00078 Score=64.29 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=71.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-+++||||.|..++.-.+.+..-|+. +|.+|+|++... +++ ..+++..+.. ......+.+++++.||+|+.+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~----a~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAF----AARLRKRGGE--AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHH----HHHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence 45799999999999999987666776 699999997643 222 2223333322 123457899999999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|.++ -++..+.+ |||+.+..++-
T Consensus 203 T~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 203 TPSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred cCCCC---CeecHhhc---CCCcEEEecCC
Confidence 88554 77877765 59999999973
No 181
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.55 E-value=0.0007 Score=64.69 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..++++|||.|.+|+..++.++..++. +|.+|+|+..+ .+++.+.+.+ ..+ .......++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~---~~g---~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS---LLG---IDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh---hcC---ceEEEeCCHHHHhccCCEEEE
Confidence 357899999999999999987435674 69999998754 2333222210 001 122234689999999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+.|. +.-+|..+. +|+|+.+..++
T Consensus 201 aT~s---~~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 201 TTPS---ETPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred ecCC---CCcEecHHH---cCCCcEEEeeC
Confidence 9874 346676654 57998888775
No 182
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00044 Score=65.80 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=67.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-++++|||.|..++.-++.+...+.. +|.+|+|++... +.+.+ ++++.+ .......+.+++++.||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~----~~~~~~---~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQ----YAQALG---FAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHH----HHHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence 46899999999999999887544544 799999997543 22222 222222 1222346899999999999998
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.| .+.-+|+.+. +|||+.++.++
T Consensus 200 T~---s~~P~~~~~~---l~~G~hi~~iG 222 (315)
T PRK06823 200 TP---SREPLLQAED---IQPGTHITAVG 222 (315)
T ss_pred cC---CCCceeCHHH---cCCCcEEEecC
Confidence 66 5567787765 57999999887
No 183
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.51 E-value=0.0004 Score=66.82 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
|..+|..|+ .-|.+|++||++.....+...+. +...| .....+..+++++||+|++++|....++.++ +
T Consensus 32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 889999874 66899999999865211111111 11222 2223578888999999999999655477777 4
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 020301 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~vde-~aL~~aL~ 287 (328)
.....+++|+++||++.+..... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788999999999999876554 56666664
No 184
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.00061 Score=66.09 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=66.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhc------CCcEEEEEcCCchh---HHHHHHhhhhhhhh-cCC-CCCccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT---RLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~------fg~~V~~~d~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell 234 (328)
.+|+|||.|+.|.++|..++.. ||.+|..|.++..- ...+.....+.-.. -.+ ..+.......++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 5899999999999999997533 45788888776531 00111110000000 000 1122222346889999
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHh--cCCCCcEEEEcCCCcccC
Q 020301 235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID 278 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~--~mk~ga~lIN~aRG~~vd 278 (328)
+.||+|++++| +...+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 92 ~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 92 EDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred hcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 99999999999 23344433 22223 466688999998774443
No 185
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.43 E-value=0.00072 Score=60.14 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=71.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC---chhHHHH-----H-----Hhhhhhhhhc-CCCCCccc-
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-----F-----VTAYGQFLKA-NGEQPVTW- 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~---~~~~~~~-----~-----~~~~~~~~~~-~~~~~~~~- 224 (328)
..|..++|+|+|.|.+|..+|+.|+ ..|. +++.+|+. .+..... . .+...+.+.+ ........
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 4688999999999999999999985 6788 69999987 2110000 0 0000000000 00000000
Q ss_pred ---cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 225 ---~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
....+++++++.+|+|+-| ..+++++.+++.+....++...++...+
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 0113456788999999999 5788999999999999998777676433
No 186
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.43 E-value=0.00087 Score=63.36 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-+++||||.|..|+.-++.++.-+.. +|.+|+|++... +++.+.+ ++.. ......+.+.+++++.||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~~--~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKEF--GVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988877555555 699999997543 3333322 2211 11223357899999999999998
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.| .+.-+|..+.+ |||+.+.-++
T Consensus 190 T~---s~~P~~~~~~l---~pg~hV~aiG 212 (301)
T PRK06407 190 TN---SDTPIFNRKYL---GDEYHVNLAG 212 (301)
T ss_pred cC---CCCcEecHHHc---CCCceEEecC
Confidence 76 44577877654 6887766654
No 187
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00092 Score=65.20 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcC--CCCCccccccCCHHHHhhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKAN--GEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ell~~aDiV 240 (328)
-+++||||.|..++.-++.++.-+. -+|.+|+|++... +++.+.+ .+. +.. ....+.+.+++++.||+|
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~~~~~--~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETYPQIT--NVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhcCCCc--eEEEeCCHHHHHcCCCEE
Confidence 4689999999999999988754453 4899999997542 3333322 211 111 122357899999999999
Q ss_pred EEcCCCCh---hhhccccHHHHhcCCCCcEEEEcCC
Q 020301 241 SLHPVLDK---TTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 241 ~l~~plt~---~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+.+.+.+. .+.-+|..+. +|||+.++.++.
T Consensus 228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 99987543 3457787765 479998877654
No 188
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00077 Score=64.90 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=65.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
-++++|||.|..++.-++.+..-+.. +|.+|+|++... +++.+. ++..+ .....+.++++++++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAGPG---LRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHhcC---CcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988876555655 699999997542 233222 22211 2233357899999999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.|. .++.-++..+. +|||+.+.-++
T Consensus 201 T~S-~~~~Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 201 TAD-KTNATILTDDM---VEPGMHINAVG 225 (346)
T ss_pred cCC-CCCCceecHHH---cCCCcEEEecC
Confidence 873 23235666654 48999877654
No 189
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.40 E-value=0.00016 Score=57.35 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=58.6
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
.++|+++.|||.|.+|.+-++.| ...|++|+++++.. ...++ . ..+. ...+++.+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence 58999999999999999999997 68999999999985 11111 0 1111 124456688999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.+.+. ++ +|+......+.--+++|++
T Consensus 66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 66 AATDD-PE----LNEAIYADARARGILVNVV 91 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence 88762 22 4555666666566788875
No 190
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.40 E-value=0.0018 Score=58.80 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=71.3
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC----------chhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (328)
.++.|+++.|.|+|++|+.+|+.| ..+|++|++...+ ......++.+.++. ..........+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~------l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGS------VLGFPGAERITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCC------cccCCCceecCC
Confidence 468999999999999999999997 6899999955332 11111111111110 000000011122
Q ss_pred HHH-hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 231 ~el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+++ -..||+++-|.+ .+.++.+...+++ =.+++-.+-+++- ..-.+.|++..+.
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 222 236899988865 6778888888887 4566677777763 4445666666554
No 191
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.40 E-value=0.0005 Score=61.25 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=51.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
-++.|+++.|||.|.+|...++.| ...|++|++++|...+...+..+ .+. ..+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~~--i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EGK--IRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CCC--EEEEecCCChhhcCCceEE
Confidence 479999999999999999999987 57899999999876544333211 111 1111111113457889998
Q ss_pred EEcCCC
Q 020301 241 SLHPVL 246 (328)
Q Consensus 241 ~l~~pl 246 (328)
+.+...
T Consensus 75 iaaT~d 80 (202)
T PRK06718 75 IAATND 80 (202)
T ss_pred EEcCCC
Confidence 888763
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.39 E-value=0.0011 Score=63.53 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=63.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..++++|||.|.+|+..+..++...+ -+|.+|+|+... .+++.+.+.. ..+ .......++++++++||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~---~~g---~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA---ELG---IPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh---ccC---ceEEEeCCHHHHHccCCEEEE
Confidence 35789999999999998887643455 479999998653 2333322210 011 122234689999999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
+.|.. .-++..+. +|+|+.+.-+
T Consensus 204 aT~s~---~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 204 TTPSE---EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred eeCCC---CcEecHHH---cCCCceEEee
Confidence 98743 45666654 4677766654
No 193
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.38 E-value=0.0006 Score=60.90 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc-ccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 239 (328)
.++.|+++.|||.|.+|..-++.| ..+|++|.++++...+..++..+ .+. ..+. .... .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~~--i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QGG--ITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cCC--EEEEeCCCC-HHHhCCcEE
Confidence 468999999999999999999997 58999999999987654443211 111 1111 1112 345788999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
|+.+... ++ +|.......+...++||+
T Consensus 73 Vi~at~d-~~----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 73 VIAATDD-EE----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred EEECCCC-HH----HHHHHHHHHHHcCCEEEE
Confidence 8877553 32 344444445445566665
No 194
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.38 E-value=0.00064 Score=60.86 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=63.2
Q ss_pred EEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|||||+|.||+.+.+.+..+ .+++ +.+||++.++..+. . ...+.....+++|++++.|+++=|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~------------~~~~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-E------------ASVGRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-H------------hhcCCCccccHHHHhhccceeeeeC
Confidence 699999999999999986322 3354 77899987653221 0 0111223378999999999998776
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~a 281 (328)
. ++...-+ ..+.+|.|--+|=+|-|.+.|+.-
T Consensus 69 S--~~Av~e~---~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 69 S--PEAVREY---VPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred C--HHHHHHH---hHHHHhcCCCEEEEechhccChHH
Confidence 5 4433323 334455665566666688887653
No 195
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.37 E-value=0.00058 Score=63.29 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.+++|+++.|||-++| |+.+|.+| ..-++.|.+++... .++.+..++||
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~AD 201 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNAD 201 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCC
Confidence 35899999999999985 89999997 57899999886532 47888999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
+|+.++-. .++|..+. .|+|+++|+++--
T Consensus 202 Ivv~AvG~----p~~i~~d~---vk~gavVIDVGin 230 (283)
T COG0190 202 IVVVAVGK----PHFIKADM---VKPGAVVIDVGIN 230 (283)
T ss_pred EEEEecCC----cccccccc---ccCCCEEEecCCc
Confidence 99999763 46676544 5899999999743
No 196
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.36 E-value=0.001 Score=63.06 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
++|+|+|.|.-|.++|+.|+ .-|-+|..|.+.++-..+ .... ........-..+.......+++++++.||+|++.+
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~-i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAE-INETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHH-HHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence 57999999999999999985 667888888886542111 1000 00000001112333344578999999999999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde 279 (328)
| +...+..+.. .-..+++++.+|+++-|=-.+.
T Consensus 80 P-s~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 80 P-SQALREVLRQ-LKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred C-hHHHHHHHHH-HhhhccCCCeEEEEeccccCCC
Confidence 9 3444444322 2245689999999998755543
No 197
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.00082 Score=64.60 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=64.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh--cCCC-CCccccccCCHHHHhhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGE-QPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.+++|||.|.+|..+|..|+ ..| .|..|.+++.. .+.... .+.... ..+. .+.......++++.++.+|+|++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~-~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil 83 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDIND-NHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM 83 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHh-cCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence 57999999999999999975 556 67777765432 111110 000000 0011 01112233578888999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
++| +..++..+ ++.-..++++..+|++.-|=
T Consensus 84 avp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 84 GVP-SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EeC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 999 44555544 33444567888899998864
No 198
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.33 E-value=0.00064 Score=55.31 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=54.2
Q ss_pred EEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+||||| .|.+|+.+.++|++...+++... ++..... ..+...|. ...+........ .+.++ +..+|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADPEE-LSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSGHH-HTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cchhH-hhcCCEEEecC
Confidence 689999 99999999999877778886654 4433110 11111110 001111111111 23344 59999999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|. ++..-+.... .++|..+|+.+.
T Consensus 75 ~~--~~~~~~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 75 PH--GASKELAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp CH--HHHHHHHHHH---HHTTSEEEESSS
T ss_pred ch--hHHHHHHHHH---hhCCcEEEeCCH
Confidence 83 2222122222 468889999874
No 199
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.30 E-value=0.0029 Score=57.00 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=69.7
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc---------hhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (328)
.++.|+++.|.|||++|+.+|+.| ...|.+|++ .|.+. ....+ +.... .+..........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~-~~~~~------~~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELIN-YAVAL------GGSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHH-HHHhh------CCccccCcccccCc
Confidence 468999999999999999999997 588887665 45443 01111 11111 11111000001122
Q ss_pred HHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (328)
Q Consensus 231 ~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 291 (328)
++++ ..||+++-|.+ .+.|+.+....++ =.+++--+-+++-+ + -.+.|++..+
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi 144 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGI 144 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence 2322 37999998877 5588888888887 55677777887765 3 3455555443
No 200
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.25 E-value=0.0015 Score=60.62 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=70.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~ 241 (328)
..+++++|+|.|.+|+.++..+ ...|++|.+++|+..+. ++..+.+ ...+. ....++++ .+.++|+|+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~-----~~~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE-----IQAFSMDELPLHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc-----eEEechhhhcccCccEEE
Confidence 4678999999999999999997 46789999999986432 2222221 11111 01123333 345899999
Q ss_pred EcCCCCh--hhhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 242 l~~plt~--~t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
.+.|..- +... .++ ++.++++.+++++.-.+. ++ .|.++.++.
T Consensus 184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~ 229 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL 229 (270)
T ss_pred ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence 9999742 2211 222 345789999999977654 44 455555543
No 201
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.25 E-value=0.0014 Score=64.18 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
+|.++++.|||.|.||.-+|+.| ...| .+|++.+|+.... ++....+ + .......++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~-------~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKL-------G---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence 48999999999999999999998 4777 5799999987643 2222222 2 2223446777889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCc
Q 020301 241 SLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGP 275 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~ 275 (328)
+.+. .....++..+.+...- ++-++|+.|=..
T Consensus 243 issT---sa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 243 ISST---SAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred EEec---CCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 9884 3556677766655441 125788877433
No 202
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.0017 Score=61.82 Aligned_cols=104 Identities=25% Similarity=0.332 Sum_probs=63.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHh-hcCCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVL-READVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell-~~aDiV~l~ 243 (328)
+++|||.|.+|..+|..|+ ..|.+|..|+|+... .+..... +...+ -.+. .+.......++++.+ ..+|+|+++
T Consensus 2 kI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~-~~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS-SKKISVNLWGRNHTT-FESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHH-HHHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 5999999999999999974 678999999997532 1111100 00000 0000 111112235677776 589999999
Q ss_pred CCCChhhhccccHHHHh-cCCCCcEEEEcCCCc
Q 020301 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~ 275 (328)
+| +.++...+. +... .++++..+|...-|-
T Consensus 79 vk-s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 79 VP-TQQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred eC-HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 99 345555443 2333 567777777776664
No 203
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.24 E-value=0.0017 Score=64.13 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=65.7
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|+++.|||.|.+|+.+|+.| ...|. ++++++|+... .+.+...|+ . .......++.+++.+||+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFR-------N--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence 47899999999999999999997 56785 79999998643 233333221 0 0112235667889999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+.|.+ ....+|..+.+. .+.-++|+.|=
T Consensus 247 I~aT~---a~~~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 247 IAAVN---VLEYIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred EECcC---CCCeeECHHHhC--CCCeEEEEeCC
Confidence 99976 335556665543 23457777764
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.23 E-value=0.0021 Score=61.24 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=73.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+..++|+|||.|.+|..+|..++ ..| .++..||++.........+... .....+ .........+.+ .++.||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~-~~~~~~-~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKH-FSTLVG-SNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhh-hccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence 35679999999999999999864 445 7899999976432111111100 000001 011112224666 679999999
Q ss_pred EcC--CCCh-hhh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCccEEE--Ee
Q 020301 242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (328)
Q Consensus 242 l~~--plt~-~t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gaa--lD 297 (328)
++. |..+ .++ .++- .+.+....|.+++||++--.=+-...+.+.-. ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 5433 111 1110 22334446889999996543333444444332 35666665 55
No 205
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.23 E-value=0.0014 Score=65.00 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=73.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-cC----------CchhHHHHHHhhhhhhhhcCCCCC-ccccccC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKANGEQP-VTWKRAS 228 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 228 (328)
.++.|+||.|.|||++|+.+|+.| ..+|++|++. |. ... .+.++.+....... +... .+. ...
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~--~~~~~~~~-~~i 302 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRIS--EYAEEFGA-EYL 302 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchh--hhhhhcCC-eec
Confidence 468999999999999999999997 6899999988 52 211 11111110000000 0000 000 112
Q ss_pred CHHHHhh-cCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 229 ~l~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+.++++. .|||++-|.. .+.|+.+...+++ +=.+++-.|-|++ ..+ -.+.|.+..|.
T Consensus 303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 3444444 6999987765 7778888777773 2457778888887 433 44566665554
No 206
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.21 E-value=0.0017 Score=61.45 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=74.0
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+..... ...........++++ ++.||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 47999999999999999874 4443 8999999654322111121111000 000111222357777 79999999998
Q ss_pred CCChhhhc------------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE--Ee
Q 020301 245 VLDKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (328)
Q Consensus 245 plt~~t~~------------li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa--lD 297 (328)
+. |...+ ++- .+.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 83 32221 221 122334457899999976443444455555 5555677775 66
No 207
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.21 E-value=0.0012 Score=62.93 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
-++||||+|+||+.+++.+.+.=++++.+ +|++......+ . .+.....+.++++.+.|+|++|.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874334899876 68875222111 0 11112346777889999999999
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|.... -......++.|.-+|+..
T Consensus 69 Ps~th-----~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSATD-----IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCccC-----HHHHHHHHHcCCCEEECC
Confidence 84322 244445566777777774
No 208
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.21 E-value=0.0023 Score=59.11 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhc--CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhcCCEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~ 241 (328)
.+|||||+|.||+.+++.+.++ .++++. +|++.... .++.. +. ...+.+++++ ....|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987432 235544 45655422 11110 00 2235689997 58899999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd---e~aL~~aL~~ 288 (328)
=|.. ++...-..... ++.|.-++=.|=|.+-| ++.|.++.++
T Consensus 68 E~A~--~~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 68 EAAG--QQAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ECCC--HHHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 8876 33322233333 44666777777788887 3455555554
No 209
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.19 E-value=0.0012 Score=60.97 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=70.2
Q ss_pred HHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301 180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (328)
Q Consensus 180 vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~ 258 (328)
+|+.|. +++..+|++||+++...... +..|.... ...+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~~~---~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGIIDE---ASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSSSE---EESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCeee---ccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence 345542 24558999999987653221 12233221 1223 5678999999999993 3445544 556
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE-eCCCCCCC-C---CCCcccCCCeEEcCCCC
Q 020301 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA 322 (328)
Q Consensus 259 ~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal-DV~~~EP~-~---~~~L~~~~nvilTPHia 322 (328)
-..+++|+++++++.-..--.+++.+.+..+ ....+. =-|-+|-. + ...|++-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 6679999999999876644445555555522 122221 12222211 1 23688889999999865
No 210
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.18 E-value=0.0016 Score=61.70 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=73.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-CCCCCc-cccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+++|||.|.||..+|.+| ...|.+|.++.|....... ..+-.... .+.... ......+.+ .+..+|+|+++
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVR----ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHH----hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 5799999999999999998 4679999999887532211 11101100 010000 001112333 46789999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa 295 (328)
++.. ++...+ +..-...+++++++...-| +-.++.|.+.+...++.++.
T Consensus 80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 9943 444333 3333446778888887666 45677788888766666553
No 211
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.16 E-value=0.0017 Score=62.22 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.|+++.|||.|.||+.+|+.| ..-| .+|++.+|+... .. |+. .....-+.+.++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~--~~----~~~-------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLT--LP----YRT-------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCccc--cc----hhh-------------hhhhhhhcccCCCEE
Confidence 58899999999999999999998 5677 469999998642 11 100 000111445789999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd 278 (328)
+.+-..|....-++..+.++..++ -++|+.|=..=||
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPRdId 267 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPRTFP 267 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCCCCc
Confidence 987433344445566666665443 3888887544343
No 212
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.14 E-value=0.0028 Score=59.40 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=72.7
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.++++.|+|.|..|++++..| ...|+ +|+++||+..+ .+...+.+.. .. .........++.+.++.+|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELNA----RF-PAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence 45679999999999999999997 47887 79999998643 2232222210 00 001111224566678899999
Q ss_pred EEcCCCChhh--hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 241 ~l~~plt~~t--~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
+.+.|..-.. ...++. +.++++.+++|+.=.+ .++.-|.+|=+.|
T Consensus 197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~ll~~A~~~G 243 (284)
T PRK12549 197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP-LETELLRAARALG 243 (284)
T ss_pred EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCHHHHHHHHCC
Confidence 9998864211 112333 3466778888886544 3455555555545
No 213
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.13 E-value=0.002 Score=60.48 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+.|+++.|+|.|-+|++++..| ...|++ |.+++|+.. .+.++..+.+..................++++.+..+|
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 46789999999999999999987 478986 999999852 22222222211000000000000111123455677899
Q ss_pred EEEEcCCCChh--hhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 239 VISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 239 iV~l~~plt~~--t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
+|+.+.|..-. +.. .+. ....++++.+++++.=.+ .++.-|..|=+.|
T Consensus 202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 252 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP-KKTKLLEDAEAAG 252 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC-CCCHHHHHHHHCC
Confidence 99999985421 111 110 123456677777775433 2444444444444
No 214
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.13 E-value=0.0063 Score=64.15 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=87.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhcCCC-CC-------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGE-QP-------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~-~~-------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++...|++|..||+++..... .... .+.. ..+.+. .+ ......+++ +.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDK-KVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 689999999999999998743669999999998653211 1111 1111 111111 10 012223456 457
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~ 300 (328)
+.||+|+=++|-+.+.+.-+-++.=+.++|+++|...+.+ +....|.+.++. .=.-.++--|.
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 9999999999988888887777777889999999766543 667778887754 33456666664
No 215
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.12 E-value=0.0074 Score=63.53 Aligned_cols=131 Identities=14% Similarity=0.198 Sum_probs=86.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCC-C-------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQ-P-------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~-~-------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++...|++|+.||++++.... ... +.+.. ..+.+.. + ......++++ .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 579999999999999998643469999999998753211 111 11111 1111111 0 1112235664 57
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
+.||+|+=++|-..+.+.-+-++.=+.++++++|...+.+ +....|.++++. .=.-.++--|.+
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP 446 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP 446 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence 9999999999998888887777777888999888755443 566777777754 334566666643
No 216
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.09 E-value=0.0013 Score=60.89 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=73.7
Q ss_pred EEEEec-CHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 168 vgIiG~-G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
++|||. |.+|..+|..++ ..| -+|..||...+.. +............ . ........+++++.++.||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999864 445 6899999876432 1111111111111 0 11222234567889999999999
Q ss_pred cCCC--Ch---------hhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE-EeCC
Q 020301 243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVF 299 (328)
Q Consensus 243 ~~pl--t~---------~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa-lDV~ 299 (328)
+.-. .+ ++..++. .+.+++..|++++||.+-.-=+-...+.+. +...++.|.+ +|..
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 6521 11 1111121 123334458999999963222333345445 4567788888 7753
No 217
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0067 Score=58.60 Aligned_cols=127 Identities=19% Similarity=0.261 Sum_probs=93.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (328)
..+|+||+|.||+.+|..+ ..-|.+|.+|+|+..+. +++.++. +. ........+++|+ |+.=--|.+
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~~-------~~-~k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAER-------AK-GKNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHhC-------cc-CCCccccCcHHHHHHHhcCCceEEE
Confidence 4599999999999999997 58899999999998654 3343321 10 1122334577765 555666666
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
.+-...-... +-++.+..|-+|=++|+-+-..--|+.--.++|.+..|...+.-|.-.|-
T Consensus 74 MVkAG~~VD~-~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe 133 (473)
T COG0362 74 MVKAGTPVDA-VIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE 133 (473)
T ss_pred EEecCCcHHH-HHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence 6654321122 23677888999999999998888899999999999999999999998874
No 218
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.07 E-value=0.0058 Score=64.62 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=88.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++ ..|++|..||+++..... +... .+.. ..+.+... .......+++ .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNK-KVKRKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999975 569999999998754211 1111 1111 11112110 1112234665 46
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
+.||+|+=++|-+.+.+.-+-++.=+.++++++|...+. -++-..|.++++. .=.-.++..|.+
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P 476 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSP 476 (737)
T ss_pred ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCC
Confidence 999999999998888888887877788999998864433 3677788888765 345677777753
No 219
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.99 E-value=0.0042 Score=49.76 Aligned_cols=107 Identities=25% Similarity=0.353 Sum_probs=64.2
Q ss_pred EEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 242 (328)
++||||+|.+|+...+.+.+. -++++. ++|+++... +...+.| + ...+.+++++++ ..|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY-------G-----IPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT-------T-----SEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh-------c-----ccchhHHHHHHHhhcCCEEEE
Confidence 699999999999998776433 467765 678876432 2222222 2 224689999998 7899999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~-aRG~~vde~aL~~aL~~g~ 290 (328)
+.|. .++.-+-...+++=+ .+++.- ---.+-+.+.|.++.++.+
T Consensus 69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9993 333323333333222 444443 1123334556666655543
No 220
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.99 E-value=0.0039 Score=65.78 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=87.6
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (328)
++|+|||.|.||..+|..++ ..|.+|+.||++...... +.. ..+.. ..+.+... .......++++ +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNK-QVERGKIDGAKMAGVLSSIRPTLDYAG-F 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence 68999999999999999975 669999999998754211 111 11111 11112110 01122346644 6
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (328)
+.||+|+=++|-..+.+.-+-.+.=+.++++++|...+.+ +....|.++++. .=.-.++-.|.+
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P 454 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence 9999999999998898888878877889999988765443 566777787764 334566666643
No 221
>PLN02477 glutamate dehydrogenase
Probab=96.96 E-value=0.006 Score=59.99 Aligned_cols=116 Identities=24% Similarity=0.294 Sum_probs=72.9
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCC-------c--hhHHHHHHhhhhhhhhcCCCCCc-cccccCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY-------Q--ATRLEKFVTAYGQFLKANGEQPV-TWKRASS 229 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~-------~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (328)
.++.|+|+.|.|||++|+.+|+.| ...|++|++ .|.+ - ...+.++.+..+ ..... +... .+
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g------~l~~~~~a~~-i~ 273 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGG------GLKGFPGGDP-ID 273 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC------chhccccceE-ec
Confidence 478999999999999999999997 688999994 4543 0 111111111000 00000 1111 12
Q ss_pred HHH-HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 230 MDE-VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 230 l~e-ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
.++ +...||+++-|. ..+.|+++...++| =.+++-.|-+++ ..+ -.+.|++..|.
T Consensus 274 ~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 274 PDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred CccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 233 345799997663 46789999888886 567888888988 433 34777776554
No 222
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.94 E-value=0.11 Score=49.81 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=65.9
Q ss_pred ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+.|++|++||=+ ++.++++..+ ..||++|.+..|..-...+...+.-.+.++..|. ......++++.+++||+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~---~~~~~~d~~~a~~~aDv 228 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESGA---RITVTDDIDKAVKGVDF 228 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence 4789999999986 5788888876 5899999999875321111111000000111121 22345799999999999
Q ss_pred EEEcC----CCCh---hh------hccccHHHHhcC-CCCcEEEEc
Q 020301 240 ISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC 271 (328)
Q Consensus 240 V~l~~----plt~---~t------~~li~~~~~~~m-k~ga~lIN~ 271 (328)
|..-. .... +. .-.++++.++.. |+++++.-+
T Consensus 229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 97632 1100 11 123688888886 788888766
No 223
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.93 E-value=0.13 Score=48.78 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=67.1
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+.|.+|+++|= +++.++++..+ ..||++|.+..|..-...+...+.-.....+.| .......++++.+++||+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 78999999997 68888888886 689999999987542211111110000011112 11233479999999999997
Q ss_pred EcC-C-CCh-----h-----hhccccHHHHhcCCCCcEEEEc
Q 020301 242 LHP-V-LDK-----T-----TYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 242 l~~-p-lt~-----~-----t~~li~~~~~~~mk~ga~lIN~ 271 (328)
.-. . ... + ..-.++++.++.+|+++++.=+
T Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 642 1 111 1 1235788999999999888766
No 224
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.91 E-value=0.0048 Score=56.80 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=72.6
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-c-------CCch--hHHHHHHhhhhhhhhcCCC--CCc-----c
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQA--TRLEKFVTAYGQFLKANGE--QPV-----T 223 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d-------~~~~--~~~~~~~~~~~~~~~~~~~--~~~-----~ 223 (328)
.++.|+|+.|-|||++|+.+|+.| ..+|++|++. | +.-- +.+....+ + -...+. ... +
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~-~---~~~~~~~v~~~~~~~~~ 108 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKE-I---KEVRRGRVSEYAKKYGT 108 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHH-H---HHhcCCcHHHHhhcCCC
Confidence 578999999999999999999997 6899999944 3 2100 01100000 0 000010 000 0
Q ss_pred ccccCCHHHH-hhcCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 224 WKRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 224 ~~~~~~l~el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
... .+.+++ -..||+++-| .+.+.|+++..++++ +=.+++-.+-|++-+ +-.+.|.+..|.
T Consensus 109 a~~-~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 109 AKY-FEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CEE-eCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 111 233333 3469999877 468899999888884 345777788888755 344566665554
No 225
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.0048 Score=59.72 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=87.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH--hhhh---------hhhhcCCCCCccccccCCHHHHh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--TAYG---------QFLKANGEQPVTWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~l~ell 234 (328)
.++||||+|-||..+|-.++ .-|.+|+++|.++..-. ..- ..|- ....+.| .....++.++ +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g----~lraTtd~~~-l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESG----KLRATTDPEE-L 82 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcC----CceEecChhh-c
Confidence 78999999999999999985 67999999999875321 100 0000 0000111 1111234444 5
Q ss_pred hcCCEEEEcCCCChhhhc-------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CccEEEEeCC---CC
Q 020301 235 READVISLHPVLDKTTYH-------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---ED 301 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~-------li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g-~i~gaalDV~---~~ 301 (328)
+.||++.+|+| ||-+.+ +.+ +..-.-||+|..+|==|.-..=-++.++..|.+. .=...+-|+| .+
T Consensus 83 ~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 83 KECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 69999999999 564442 111 3345668999999988887777788888887764 1122335643 45
Q ss_pred CCC-CCC---CcccCCCeE
Q 020301 302 EPY-MKP---GLSEMKNAI 316 (328)
Q Consensus 302 EP~-~~~---~L~~~~nvi 316 (328)
|-. |.+ .+.+.|.||
T Consensus 162 ERv~PG~~~~el~~~~kVI 180 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVI 180 (436)
T ss_pred cccCCCchhhhhhcCCcee
Confidence 532 222 355566665
No 226
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0014 Score=62.84 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=46.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
++||||||-|..|+.++.. ++.+|.+|++.|+.+........+ ... .........+.++.+.||+|+
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~i-~~~~dD~~al~ela~~~DViT 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RVI-VAAYDDPEALRELAAKCDVIT 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------cee-ecCCCCHHHHHHHHhhCCEEE
Confidence 4799999999999999998 589999999999987653221100 000 000011235789999999995
No 227
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.89 E-value=0.13 Score=49.20 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=65.9
Q ss_pred ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+.|+||++||-+ ++.++++..+ ..||++|.+..|..-...++..+..-..++..|. ......++++++++||+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETGA---KITITEDPEEAVKGADV 227 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence 3789999999997 7888888886 6899999998875422112111110001111121 12234789999999999
Q ss_pred EEEcCCC--C-----hh-----hhccccHHHHh-cCCCCcEEEEc
Q 020301 240 ISLHPVL--D-----KT-----TYHLINKERLA-TMKKEAILVNC 271 (328)
Q Consensus 240 V~l~~pl--t-----~~-----t~~li~~~~~~-~mk~ga~lIN~ 271 (328)
|..-+=. . ++ ..--++++.++ .+|+++++.=+
T Consensus 228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 9764310 0 11 12236778888 47888887755
No 228
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.88 E-value=0.0032 Score=55.97 Aligned_cols=102 Identities=24% Similarity=0.227 Sum_probs=62.7
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH------------HHHhhhhhhhhcCC-CCCcc-
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANG-EQPVT- 223 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~-~~~~~- 223 (328)
..|.+++|.|+|+|.+|..+|+.| ...|. ++..+|+..-+. +. ...+...+.+++-. .....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 469999999999999999999998 47787 899999863100 00 00000000011000 00000
Q ss_pred ---ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301 224 ---WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (328)
Q Consensus 224 ---~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ 264 (328)
.....+++++++++|+|+.|+. +.+++.++++...+..+|
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip 138 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGTP 138 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 0011245678999999988875 678888888877665543
No 229
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.87 E-value=0.0039 Score=62.67 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=64.3
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
+.++.|++++|+|.|.+|+.++..+ ...|++|.+++|+..+. ++..+.+ +. ......++.+ +..+|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~---~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QG---KAFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------cc---ceechhHhcc-cCCCCE
Confidence 3467899999999999999999997 58899999999876432 2221111 00 0001122222 578999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
|++|+|.... +. ..+. .+++++.-.+.. +. |.++.++
T Consensus 394 VInatP~g~~----~~-~~l~-----~~v~D~~Y~P~~-T~-ll~~A~~ 430 (477)
T PRK09310 394 IINCLPPSVT----IP-KAFP-----PCVVDINTLPKH-SP-YTQYARS 430 (477)
T ss_pred EEEcCCCCCc----ch-hHHh-----hhEEeccCCCCC-CH-HHHHHHH
Confidence 9999996542 22 2221 267777665532 22 5555544
No 230
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.85 E-value=0.0057 Score=56.16 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=59.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
-++-|+|.|.+++.+|+.+ +.+|++|.++|+++.-. + ...+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~--------------------------~-~~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEF--------------------------P-EDLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcccc--------------------------c-ccCCCCceEEecCCH
Confidence 3699999999999999985 89999999999764310 0 001123333322212
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 291 (328)
.+.+..+.++.++|=+.|+.-.|.++|..+|++...
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 233334557788888889999999999999954333
No 231
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.85 E-value=0.0063 Score=64.16 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=85.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC-------ccccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~ 235 (328)
++|+|||.|.||..+|..++ ..|++|..||+++..... +.. ..+....+.....+ .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999985 669999999998754211 111 11111111111100 0112234554 469
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~ 300 (328)
.||+|+=++|-..+.+.-+-++.=+.++|+++|-..+.+ ++-..|.++++. .=.-.++=.|.
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999988888877777777889999988765443 666777777764 33345555553
No 232
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.84 E-value=0.01 Score=50.77 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCCEEEEEe--cCHHHHHHHHHHHhcCCcEEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 164 ~g~tvgIiG--~G~IG~~vA~~l~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.|+|+++|| .+++.++++..+ ..||+++.+..|..- +...+..+.-.+.+...| .......++++.+++||+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 488999999 489999999986 689999999988752 221122211001111112 112233799999999999
Q ss_pred EEEcCCCC----hh-------hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301 240 ISLHPVLD----KT-------TYHLINKERLATMKKEAILVNCS---RGPVIDEV 280 (328)
Q Consensus 240 V~l~~plt----~~-------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~ 280 (328)
|..-.--+ +. ..-.++++.++.+|++++|.-+. ||.=|+.+
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e 131 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE 131 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence 96544331 11 11457899999999999998873 66544443
No 233
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.84 E-value=0.0035 Score=53.61 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=35.8
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
..+|.|+++.|||.|.+|...++.| ...|++|.++++...+
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~ 48 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK 48 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence 3589999999999999999999997 5789999999876543
No 234
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.78 E-value=0.0056 Score=58.56 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l 242 (328)
.|++|+|+|+|-.|....+. ++++|++|+++|++.++. ++..++ |...... .....++++-+.+|+++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~--e~a~~l-------GAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKL--ELAKKL-------GADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHH--HHHHHh-------CCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 48999999999999988888 589999999999997653 111112 2211111 111233444444999999
Q ss_pred cCC
Q 020301 243 HPV 245 (328)
Q Consensus 243 ~~p 245 (328)
++|
T Consensus 236 tv~ 238 (339)
T COG1064 236 TVG 238 (339)
T ss_pred CCC
Confidence 988
No 235
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.77 E-value=0.0063 Score=49.78 Aligned_cols=110 Identities=26% Similarity=0.337 Sum_probs=59.6
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|+|+|+ |+||+.+++.+.+.-++++. ++|+..++...+.. + +-.+..+.+.....++++++.++|+++-.-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~---g---~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDV---G---ELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBC---H---HHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchh---h---hhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 6999999 99999999997555789855 55766522111100 0 001222333444579999999999997664
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
+|+.-.-.-+..++ .|.-+|--..|---++.+.++.+.
T Consensus 76 --~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 76 --NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp ---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred --ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHh
Confidence 34433222233333 355556555565333334444443
No 236
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.75 E-value=0.0069 Score=56.17 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=59.0
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
.++||||+|+||+.+++.+.+.-++++.+ +++..... .....+ + .+...+.+++++-...|+|+.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~--~~~~~~-------~---~~~~~~~d~~~l~~~~DvVve~t 69 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID--AVRRAL-------G---EAVRVVSSVDALPQRPDLVVECA 69 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH--HHhhhh-------c---cCCeeeCCHHHhccCCCEEEECC
Confidence 37999999999999999874322565543 33322211 000000 0 01223467888745689999998
Q ss_pred CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020301 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM 291 (328)
Q Consensus 245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~i 291 (328)
|. +... +-....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 70 ~~--~~~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 70 GH--AALK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred CH--HHHH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 83 2222 222233344444554444555543 445666655443
No 237
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.72 E-value=0.0046 Score=59.42 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=61.7
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh--------------------HHHHHHhhhhhhhhcC-C
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKAN-G 218 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~-~ 218 (328)
..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+ +.+...+ .+++- .
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~----~l~~inp 94 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKE----HLRKINS 94 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHH----HHHHHCC
Confidence 4699999999999999999999984 7787 78888886410 1000000 01100 0
Q ss_pred CCCccc----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 219 ~~~~~~----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
...... ....+++++++++|+|+.+. .+.+++.++|+-..+.
T Consensus 95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~~ 140 (338)
T PRK12475 95 EVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQKY 140 (338)
T ss_pred CcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 000000 01135788999999999988 5788888888766553
No 238
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.72 E-value=0.29 Score=46.37 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=67.3
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+.|.+|+++|= +++.++++..+ ..||++|.+..|..-...++..+.+ ++..| .......++++.+++||+|.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy 222 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVY 222 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 77899999998 78899999986 6899999999875422111111110 11112 11223479999999999997
Q ss_pred Ec----CCCC---hh-----hhccccHHHHhcCCCCcEEEEc
Q 020301 242 LH----PVLD---KT-----TYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 242 l~----~plt---~~-----t~~li~~~~~~~mk~ga~lIN~ 271 (328)
.- .... ++ -.--++++.++.+|+++++.-+
T Consensus 223 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 223 TDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred ecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 64 2211 11 1234678888889988888776
No 239
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.71 E-value=0.03 Score=52.95 Aligned_cols=132 Identities=24% Similarity=0.320 Sum_probs=85.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HH-HhhhhhhhhcCCCCCc-----c---ccccCCHHHH
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KF-VTAYGQFLKANGEQPV-----T---WKRASSMDEV 233 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~-~~~~~~~~~~~~~~~~-----~---~~~~~~l~el 233 (328)
-+++||||.|.||+.+|..++ .-|..|..+|+++..... .. .+.+.... ..|.... . ....+++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~-~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEKLV-EKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCChhhHHHHHhhccccCchh-H
Confidence 478999999999999999975 456999999998543111 01 11111111 1121100 0 11122333 6
Q ss_pred hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
++.||+|+=.+|-+-+.++-+-++.=...||+++|= |||+ +.-.+|.++++. +=...++=.|.+-|
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~r-per~iG~HFfNP~~ 146 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKR-PERFIGLHFFNPVP 146 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCC-chhEEEEeccCCCC
Confidence 899999999999888888777777777789999885 4444 566788888844 44566776665544
No 240
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.70 E-value=0.01 Score=58.78 Aligned_cols=120 Identities=11% Similarity=0.090 Sum_probs=71.3
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc----------hhHHHHHHhhhhhhhhcCCCCCc----ccc
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPV----TWK 225 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (328)
|.+|.|+||.|.|+|++|+..|+.| ..+|++|++...+. ...+. +..++... ........ +.
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~-~~~~v~~~~~~~ga- 298 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNL-YRGRIREYAEKYGC- 298 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhh-cCCchhhhHhhcCC-
Confidence 3579999999999999999999997 68999999854411 01110 00111000 00000000 11
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcC
Q 020301 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~-ga-~lIN~aRG~~vde~aL~~aL~~g 289 (328)
...+-++++ ..|||++-| .+.+.|+++...+++. |. +++--|-| .+..+|.....+.|
T Consensus 299 ~~i~~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 299 KYVEGARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred EEcCCcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 112334443 469999765 4588899999999865 44 55555667 56666665444444
No 241
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.69 E-value=0.0059 Score=49.47 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=53.2
Q ss_pred EEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEE
Q 020301 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (328)
Q Consensus 167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l 242 (328)
++||+| .|.+|+.+++.+.+.=+.++.+. ++.... .+.....+. ..... ......+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence 489999 59999999998743236777666 433211 111111110 00000 000112222 258999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+|.. .+...+. .....+++|.++|+++
T Consensus 72 ~~~~~-~~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 72 ALPHG-VSKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred cCCcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence 99954 3333322 2345679999999997
No 242
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.65 E-value=0.0099 Score=54.86 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=45.5
Q ss_pred CEEEEEec-CHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+|+|+|+ |+||+.+++.+.+.-++++.+ +|+....... . ...+...+.+++++++.+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence 37999998 999999999864334788765 6766532100 0 111222357899999899999977
Q ss_pred CC
Q 020301 244 PV 245 (328)
Q Consensus 244 ~p 245 (328)
.|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 243
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.64 E-value=0.014 Score=46.43 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcccc
Q 020301 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255 (328)
Q Consensus 176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~ 255 (328)
-+..+++.| +..|++|.+|||.......... +. ..+.....++++.++.+|+|+++.+ -++-+.+--
T Consensus 18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELDW 84 (106)
T ss_dssp HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred HHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccCH
Confidence 467899987 6889999999999765332110 00 0112234689999999999999988 455555333
Q ss_pred HHHHhcCCCCcEEEEc
Q 020301 256 KERLATMKKEAILVNC 271 (328)
Q Consensus 256 ~~~~~~mk~ga~lIN~ 271 (328)
.+....|+++.++|++
T Consensus 85 ~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHSCSSEEEEES
T ss_pred HHHHHhcCCCCEEEEC
Confidence 4556778889999998
No 244
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.64 E-value=0.0057 Score=54.83 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
..++.|++|.|||.|.+|..=|+.+ ...|++|+++.+...++..... +..+.. .. ......+++ ..+++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~-------~~~~i~-~~-~~~~~~~~~-~~~~l 75 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALI-------EEGKIK-WI-EREFDAEDL-DDAFL 75 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHH-------HhcCcc-hh-hcccChhhh-cCceE
Confidence 3579999999999999999999998 5889999999998744443322 222211 10 122344444 44999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+.+++.. -+|+..++.+++-.++||+.
T Consensus 76 viaAt~d~-----~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 76 VIAATDDE-----ELNERIAKAARERRILVNVV 103 (210)
T ss_pred EEEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence 99998733 26677777777767778774
No 245
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.62 E-value=0.015 Score=53.38 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=72.7
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCchh--HHHHHHhhhhhhhhcCCCCCcc-----cc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGEQPVT-----WK 225 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~ 225 (328)
.++.|+++.|-|+|++|+.+|+.| ...|++|++. |+..-+ .+.+..+..+.. ..... ..
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~-----v~~~~~~~~~~~ 101 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSR-----VDDYPLESPDGA 101 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSH-----STTGTHTCSSTS
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCc-----ccccccccccce
Confidence 369999999999999999999997 5789999876 554321 111111111100 11110 00
Q ss_pred ccCCHH-HHh-hcCCEEEEcCCCChhhhccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 226 RASSMD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 226 ~~~~l~-ell-~~aDiV~l~~plt~~t~~li~~~~~~-~mk~ga-~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
...+-+ +++ ..||+++.|- ..+.|+.+... .+|+++ +++--+-+++- .+|.. .|++..|.
T Consensus 102 ~~~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 102 EYIPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp EEECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred eEeccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 111222 555 5899999883 36778888888 777554 55566777765 44444 77766554
No 246
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.013 Score=56.43 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=45.5
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhcCC--------CCCccccccCCHHHHhhcC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANG--------EQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~l~ell~~a 237 (328)
+|||+|+|+||+.+++.+...=++++.+........ ..+... ++ +- -.+ ....+.....++++++..+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~-~~~la~~~G-~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~v 79 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDY-EARVAVEKG-YP-LYVADPEREKAFEEAGIPVAGTIEDLLEKA 79 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHH-HHHHHHhcC-CC-ccccCccccccccCCceEEcCChhHhhccC
Confidence 799999999999999987544578887654322211 111111 10 00 000 0001122234678888999
Q ss_pred CEEEEcCCC
Q 020301 238 DVISLHPVL 246 (328)
Q Consensus 238 DiV~l~~pl 246 (328)
|+|+.|.|.
T Consensus 80 DVVIdaT~~ 88 (341)
T PRK04207 80 DIVVDATPG 88 (341)
T ss_pred CEEEECCCc
Confidence 999999873
No 247
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.0064 Score=60.71 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=71.0
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
-+.+++++|+|+|..|+++|+.| +..|++|.++|........... ..++..|.. ........+.+..+|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~----~~l~~~gi~---~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVS----NELKELGVK---LVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHH----HHHHhCCCE---EEeCCCChHHhccCCEEE
Confidence 36789999999999999999997 6999999999987532211100 011222221 111122245568899998
Q ss_pred EcCCCChhhhc-----------cccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHPVLDKTTYH-----------LINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~-----------li~~~-~~-~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.. |.-+.+.. ++++- .+ +..+...+-|--+.|..--.+-|...|+.
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 77 43333222 22222 22 22233456666678888888878888875
No 248
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.54 E-value=0.018 Score=54.25 Aligned_cols=125 Identities=12% Similarity=0.255 Sum_probs=65.8
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
++|+|||.|.+|..+|..++ ..|. +|..+|+..........+-+ ......+ .........+.+ .++.||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la-~~~~~ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA-LKELGDVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 58999999999999999875 3332 99999996643211111111 0000001 011111224564 479999999986
Q ss_pred C--CChh---------hhccccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE
Q 020301 245 V--LDKT---------TYHLINKER---LATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG 295 (328)
Q Consensus 245 p--lt~~---------t~~li~~~~---~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa 295 (328)
. ..+. +..++ .+. +....+.+++|+++-..=+-...+.+. +...++.|.+
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 3 2211 11112 222 223336788888854332333334332 2224566664
No 249
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.53 E-value=0.2 Score=48.17 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+.|.+|++||-+ ++.++++..+ ..||+++.+..|..-...++..+.--..++..|. ......++++.+++||+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNGG---NITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence 4789999999976 6889999986 5899999999875421111111100001111221 22345799999999999
Q ss_pred EEEcC----CCCh---h------hhccccHHHHhcC-CCCcEEEEc
Q 020301 240 ISLHP----VLDK---T------TYHLINKERLATM-KKEAILVNC 271 (328)
Q Consensus 240 V~l~~----plt~---~------t~~li~~~~~~~m-k~ga~lIN~ 271 (328)
|..-. .... + ..--++++.++.. |+++++.-+
T Consensus 229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc 274 (336)
T PRK03515 229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC 274 (336)
T ss_pred EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence 97641 1000 0 1223677788874 788877766
No 250
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0065 Score=59.21 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=64.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+++.|||.|.||+.+|..|+ .-| .+|++.||+..+...- .+.-. .+-....+.......+.+++++.|+|+.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~---~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIG---GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhcc---ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 57999999999999999985 555 9999999997543211 00000 000011111223346889999999999999
Q ss_pred CCChhhhccccHHHH-hcCCCCcEEEEcCCCcc
Q 020301 245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPV 276 (328)
Q Consensus 245 plt~~t~~li~~~~~-~~mk~ga~lIN~aRG~~ 276 (328)
|.. ++...+ +.++.|.-.++++=..-
T Consensus 77 p~~------~~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 77 PPF------VDLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred Cch------hhHHHHHHHHHhCCCEEEcccCCc
Confidence 943 222333 34567888888875543
No 251
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.47 E-value=0.056 Score=49.70 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=94.6
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-----------EEEEEcCCch-----hHHHHHHhhhhhhhhcCCCCCcc
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVT 223 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-----------~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
|..|...++.|+|.|.-|-.+|+.+. ..++ +++.+|+.-- +....+...+.++.+..
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~------ 92 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPE------ 92 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcc------
Confidence 35688899999999999999999874 4444 6888887520 00111111110011111
Q ss_pred ccccCCHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCccEEE
Q 020301 224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVG 295 (328)
Q Consensus 224 ~~~~~~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~---vde~aL~~aL~~g~i~gaa 295 (328)
....+|.|+++ +.|+++=. ....++|.++.++.|. +..++.=.|.-.. +..++.+++=+-..|.+.|
T Consensus 93 -~~~~~L~eav~~~kptvlIG~----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG 167 (254)
T cd00762 93 -RESGDLEDAVEAAKPDFLIGV----SRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG 167 (254)
T ss_pred -cccCCHHHHHHhhCCCEEEEe----CCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence 12368999999 99999643 1225899999999999 8999999988766 3445555553333455554
Q ss_pred EeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301 296 LDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (328)
Q Consensus 296 lDV~~~EP~~~-~~L~~~~nvilTPHia 322 (328)
--.+.++-.-. ...-+..|+++-|=++
T Consensus 168 spf~pv~~~g~~~~~~Q~NN~~iFPGig 195 (254)
T cd00762 168 SPFHPVELNGGTYKPGQGNNLYIFPGVA 195 (254)
T ss_pred CCCCCcccCCceeecccccceeeccchh
Confidence 43222222100 1345678999999765
No 252
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.46 E-value=0.017 Score=55.06 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=58.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
.+++|+|||.|.+|..+|-.+ ...|. ++..+|++.........+ +.... .- ...... ...+. +.++.||+|+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~-~~-~~~~~i-~~~~~-~~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-LSHAV-PF-TSPTKI-YAGDY-SDCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-HHhhc-cc-cCCeEE-EeCCH-HHhCCCCEEE
Confidence 467999999999999999986 45565 899999876432111111 10000 00 001111 22344 4579999998
Q ss_pred EcCCC--Ch-hhh-ccc--c----HH---HHhcCCCCcEEEEcC
Q 020301 242 LHPVL--DK-TTY-HLI--N----KE---RLATMKKEAILVNCS 272 (328)
Q Consensus 242 l~~pl--t~-~t~-~li--~----~~---~~~~mk~ga~lIN~a 272 (328)
++.-. .| +|+ .++ | ++ .+..-.|++++|+++
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 87543 11 122 111 1 12 222334789999996
No 253
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.44 E-value=0.013 Score=55.97 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=71.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+..++|+|||.|.+|..+|..++ ..| ++|..+|.+++....+..+.... ....+ .........+.+ .++.||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence 44579999999999999999864 445 58999999876432222221110 00011 111222224664 579999999
Q ss_pred EcCCCC----------------hhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCccEEE
Q 020301 242 LHPVLD----------------KTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 295 (328)
Q Consensus 242 l~~plt----------------~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gaa 295 (328)
++.-.. .++..++. .+.+....|.+++||++--.=+-...+.+... ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 976221 11112121 11233345788999997433223444444332 24566666
No 254
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.42 E-value=0.1 Score=50.48 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=64.4
Q ss_pred ccCCCEEEEEecC--------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (328)
Q Consensus 162 ~l~g~tvgIiG~G--------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (328)
.+.|+||+|+|.| ++.++++..+ ..|||+|.+..|..-...++..+.--+.++..|. ......++++.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~---~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG---KFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCC---eEEEEcCHHHH
Confidence 4789999999853 4457777776 5899999999886321111111100000112221 22235799999
Q ss_pred hhcCCEEEEcC----C----------CChh-----------------hhccccHHHHhcCC-CCcEEEEc
Q 020301 234 LREADVISLHP----V----------LDKT-----------------TYHLINKERLATMK-KEAILVNC 271 (328)
Q Consensus 234 l~~aDiV~l~~----p----------lt~~-----------------t~~li~~~~~~~mk-~ga~lIN~ 271 (328)
++.||+|..-. . ..+. -.-.++++.++.+| +++++.-+
T Consensus 243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc 312 (357)
T TIGR03316 243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC 312 (357)
T ss_pred hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence 99999997652 1 0000 12236888888888 88888776
No 255
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.42 E-value=0.038 Score=52.15 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.|++++|||--.=-..++++| ...|++|+.+.-.... | ...+.....+.++++++||+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence 478999999998888999997 5789998875422110 0 011222334678899999999999
Q ss_pred CCCChhhh---c-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301 244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (328)
Q Consensus 244 ~plt~~t~---~-------li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 293 (328)
+|.+.+.. . -++++.+++|++|..++ ++.+. .. +-+++++..+..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 99765431 1 13678999999998544 44332 22 345566666654
No 256
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.39 E-value=0.69 Score=43.84 Aligned_cols=102 Identities=23% Similarity=0.314 Sum_probs=69.6
Q ss_pred ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+.|++|+++|= +++.++++..+ ..||+++.+..|..-.. .... ......++++.++.||
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~--------------~~~~--~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP--------------EGMP--EYGVHTDLDEVIEDAD 215 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc--------------cccc--ceEEECCHHHHhCCCC
Confidence 378999999988 58999999986 68999999988743210 0000 1134579999999999
Q ss_pred EEEEcCCCC--------hhh-----hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301 239 VISLHPVLD--------KTT-----YHLINKERLATMKKEAILVNCS---RGPVIDEV 280 (328)
Q Consensus 239 iV~l~~plt--------~~t-----~~li~~~~~~~mk~ga~lIN~a---RG~~vde~ 280 (328)
+|....=.. ++- .-.++++.++.+|+++++.=+- ||.=|+.+
T Consensus 216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~ 273 (305)
T PRK00856 216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD 273 (305)
T ss_pred EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence 997643110 111 2246888888888888887662 66655544
No 257
>PLN02342 ornithine carbamoyltransferase
Probab=96.39 E-value=0.69 Score=44.68 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=66.6
Q ss_pred ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|+||+++|=+ ++.++++..+ ..||++|.+..|..-...++..+ .+++.+. ..+....++++.++.||+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~----~a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVE----KARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHH----HHHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 4789999999973 5777777775 58999999998754221111111 1111121 1223457999999999999
Q ss_pred EEcC----CCChh--------hhccccHHHHhcCCCCcEEEEc
Q 020301 241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 241 ~l~~----plt~~--------t~~li~~~~~~~mk~ga~lIN~ 271 (328)
..-. -..++ ..-.++++.++.+|+++++.-+
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 7652 11111 1245789999999999888776
No 258
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.37 E-value=0.1 Score=48.69 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=94.8
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcC----Cc-------EEEEEcCCc-----hhHHHHHHhhhhhhhhcCCCCCcc
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVT 223 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~f----g~-------~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
|..|...++.|+|.|.-|-.+|+.+. .. |+ +++.+|+.- ...+..+...|. +....
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a---~~~~~---- 91 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA---RKDEE---- 91 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH---hhcCc----
Confidence 35688999999999999999999874 44 66 899999762 111222222332 11110
Q ss_pred ccccCCHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHcCC-ccEE
Q 020301 224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRV 294 (328)
Q Consensus 224 ~~~~~~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~v---de~aL~~aL~~g~-i~ga 294 (328)
....+|.|+++ ++|+++=+- ..-++|+++.++.|. +..++.=.|.-..- ..++.+++= +|+ |.+.
T Consensus 92 -~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t-~G~ai~AT 165 (279)
T cd05312 92 -KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWT-DGRALFAS 165 (279)
T ss_pred -ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhh-cCCEEEEe
Confidence 12368999999 889996531 124899999999998 89999999987653 334444442 354 5555
Q ss_pred EEeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301 295 GLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (328)
Q Consensus 295 alDV~~~EP~~~-~~L~~~~nvilTPHia 322 (328)
|.-.-+.+..-. ..--+..|+++-|=++
T Consensus 166 GsPf~pv~~~Gr~~~p~Q~NN~~iFPGig 194 (279)
T cd05312 166 GSPFPPVEYNGKTYVPGQGNNAYIFPGIG 194 (279)
T ss_pred CCCCCCeeeCCeEecCCCcceeeeccchh
Confidence 432111111101 1345678999998765
No 259
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.37 E-value=0.62 Score=44.71 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=65.8
Q ss_pred ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+.|++|++||-+ ++.++.+..+ ..||++|.+..|..-...+...+.--..++..|. ......++++.+++||+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~ea~~~aDv 227 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETGG---KITITDDIDEGVKGSDV 227 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence 3789999999975 7888999986 6899999999875321111111100000111121 12335799999999999
Q ss_pred EEEcC----CC----Chh-----hhccccHHHHhcCC-CCcEEEEc
Q 020301 240 ISLHP----VL----DKT-----TYHLINKERLATMK-KEAILVNC 271 (328)
Q Consensus 240 V~l~~----pl----t~~-----t~~li~~~~~~~mk-~ga~lIN~ 271 (328)
|..-. .. .++ -..-++++.++.+| |++++.-+
T Consensus 228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 97642 10 001 12346888888886 58887766
No 260
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.32 E-value=0.021 Score=54.26 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+|+|||.|.+|..+|-.++ ++..-++..||++.+.......+ .... ..... .......+.++ ++.||+|+++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-l~~~---~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-LQHG---SAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-HHHh---hccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 48999999999999998764 34445899999876432211111 1000 00001 11111245665 7999999986
Q ss_pred CCC--Ch-hhh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCccEEE
Q 020301 244 PVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG 295 (328)
Q Consensus 244 ~pl--t~-~t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vde~--aL~~a--L~~g~i~gaa 295 (328)
.-. .+ +|+ .++ | .+.+....|.+++|+++ ..+|.- .+.+. +...++.|.+
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence 542 11 233 111 1 12344456899999997 344432 33333 4445666664
No 261
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.31 E-value=0.59 Score=44.88 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=66.5
Q ss_pred ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+.|.+++++|-+ ++.++++..+ ..||++|.+..|..-...++..+.-.+.++..|. ......++++.++.+|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHGG---KITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence 4789999999976 7889988886 5899999998875321111111110001111121 12334789999999999
Q ss_pred EEEcC----CCCh----h-----hhccccHHHHhcC-CCCcEEEEc
Q 020301 240 ISLHP----VLDK----T-----TYHLINKERLATM-KKEAILVNC 271 (328)
Q Consensus 240 V~l~~----plt~----~-----t~~li~~~~~~~m-k~ga~lIN~ 271 (328)
|..-. .... + -..-++++.++.. |+++++.-+
T Consensus 229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 97643 1000 1 1223678888885 788888776
No 262
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.31 E-value=0.012 Score=58.32 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred EEEEEecCHHHHHHHH--HHH---hcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 167 TVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~--~l~---~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
+|+|||.|.+|...+- -++ ..-|.+|..||+++..... .....+ ... ...........++++.++.||+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~---~~~-~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKI---VEE-LGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHH---HHh-cCCCeEEEEeCCHHHHhcCCCE
Confidence 6999999999998554 122 1235699999998743211 111111 111 1112223334688999999999
Q ss_pred EEEcCCCCh--h---------hhcc---------------------ccHHHHhcCC---CCcEEEEcCCCcccCHHHHHH
Q 020301 240 ISLHPVLDK--T---------TYHL---------------------INKERLATMK---KEAILVNCSRGPVIDEVALVE 284 (328)
Q Consensus 240 V~l~~plt~--~---------t~~l---------------------i~~~~~~~mk---~ga~lIN~aRG~~vde~aL~~ 284 (328)
|+.++|... . -.++ +-.+..+.++ |.++++|.+-..-+-..++.+
T Consensus 78 Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k 157 (423)
T cd05297 78 VINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNR 157 (423)
T ss_pred EEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHH
Confidence 999998310 0 0011 1123333333 688999987766566666665
Q ss_pred HHH
Q 020301 285 HLK 287 (328)
Q Consensus 285 aL~ 287 (328)
...
T Consensus 158 ~~~ 160 (423)
T cd05297 158 YTP 160 (423)
T ss_pred hCC
Confidence 543
No 263
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.29 E-value=0.025 Score=45.76 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=64.0
Q ss_pred CEEEEEe----cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 166 ~tvgIiG----~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
|+++||| -|..|..+.+.| +..|.+|+..++....- .+...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence 6899999 789999999997 57999999998865321 12234578888448899999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
+++|. +.+..++ ++. ..+..+.+++..+ -.++.+.+.+++..+.
T Consensus 61 v~~~~-~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 61 VCVPP-DKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp E-S-H-HHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred EEcCH-HHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 99992 3344444 232 3345778888887 6677788888876665
No 264
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.27 E-value=0.03 Score=55.59 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE--------EcCCchh--H---HHHHHhhhhhhhh--cCCCCCcccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLK--ANGEQPVTWK 225 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~--~~~~~~~~~~ 225 (328)
.++.|+||.|=|+|++|+..|+.| ..+|++|++ ||+.--. . +.++.+..+.... ..+. + +..
T Consensus 224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~-~-ga~ 300 (445)
T PRK14030 224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKF-P-GST 300 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcC-C-CCE
Confidence 468999999999999999999997 689999999 8854221 1 1111111000000 0000 0 111
Q ss_pred ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
. .+-++++ ..||+++-| .+.+.|+.+..+++. +=.+++-.|-| .+..+|- +.|.+..|.
T Consensus 301 ~-i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 301 F-FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred E-cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 1 1233443 359999766 468889998888883 24567777778 5655544 556655554
No 265
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.25 E-value=0.011 Score=55.77 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.|+.+||+|+|-+|..-.+. +++||++|++.|++..+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchh
Confidence 79999999999999776676 69999999999998643
No 266
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.25 E-value=0.022 Score=54.13 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCchh------H---HHHHHhhhhhhhhcCCCCC--------ccccccC--CHHHHhhc
Q 020301 176 IGSAYARMMVEGFKMNLIYYDLYQAT------R---LEKFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE 236 (328)
Q Consensus 176 IG~~vA~~l~~~fg~~V~~~d~~~~~------~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~ 236 (328)
||..+|..++ ..|.+|..||+++.. . ..+.....-+.....|... ....... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 5888999875 669999999998742 1 1111111111111222111 0111122 25688899
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~ 300 (328)
||+|+-++|-+.+.+.-+-.+..+.++++++|..++ +.+....|.+.++. +=+..++-.|.
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~ 140 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLN 140 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999999999888888888899999995554 44667778777753 22334444443
No 267
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.019 Score=56.96 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=72.5
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
++.+|++.|+|.|.+|.++|+.| ...|++|.++|+......++..++ +...+.. .......++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~~---~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGIE---LVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCCE---EEeCCcchhHhhcCCEEE
Confidence 36789999999999999999998 589999999999753332221111 1111221 112223346678899998
Q ss_pred EcCCCChhhhcc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~plt~~t~~l----------i~-~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.+.-..+....+ +. -+.+.. .+...+-|--+.|..--.+-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 875433332211 11 111222 232344455577888888888888875
No 268
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.21 E-value=0.015 Score=52.54 Aligned_cols=107 Identities=23% Similarity=0.199 Sum_probs=64.2
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhcCC-CCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANG-EQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~-~~~~~~ 224 (328)
..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-.. +.. ..+...+.+++-. ......
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 5689999999999999999999985 6777 687887653210 000 0000000000000 000000
Q ss_pred c----ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 225 ~----~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
. ...+++++++++|+|+.|+. +++++.++++...+. +.-+|..+
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 11345678999999999876 678888888776653 34455553
No 269
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.21 E-value=0.01 Score=49.44 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=50.1
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt 247 (328)
+-|+|.|.+|+++++.+ +.+|++|.++|++++. +..++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999985 8999999999986421 12333322 2220
Q ss_pred hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (328)
Q Consensus 248 ~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa 295 (328)
++.. +.+ .+.++.++| ++++.-.|.++|.++|++. ..-.|
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~~-~~YiG 85 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALASP-ARYIG 85 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTSS--SEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcCC-CCEEE
Confidence 1110 111 466677766 8899999999999999873 44333
No 270
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.20 E-value=0.018 Score=54.28 Aligned_cols=124 Identities=14% Similarity=0.257 Sum_probs=63.8
Q ss_pred EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl 246 (328)
|+|||.|.+|..+|..++ ..|. +|+.+|+++........+.. ......+ .........+.++ ++.||+|+++...
T Consensus 1 I~IIGaG~vG~~ia~~la-~~~l~eV~L~Di~e~~~~g~~~dl~-~~~~~~~-~~~~I~~t~d~~~-l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA-LKELGDVVLLDIVEGLPQGKALDIS-QAAPILG-SDTKVTGTNDYED-IAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hCCCcEEEEEeCCCcHHHHHHHHHH-HhhhhcC-CCeEEEEcCCHHH-hCCCCEEEEecCC
Confidence 589999999999999864 3333 99999998643211111111 0000001 1112222245554 7999999987741
Q ss_pred --Ch---------hhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCccEEE
Q 020301 247 --DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG 295 (328)
Q Consensus 247 --t~---------~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gaa 295 (328)
.+ ++..++. -+.+....|.+++|+++--.=+-...+.+.. ...++.|.+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 11 1111110 1223334577888888733222233333332 123566666
No 271
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.18 E-value=0.0058 Score=54.94 Aligned_cols=136 Identities=21% Similarity=0.281 Sum_probs=82.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh----hhc-CCCCCcc-----------ccc
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKA-NGEQPVT-----------WKR 226 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~----~~~-~~~~~~~-----------~~~ 226 (328)
..=+.|+|||.|.||+.+|+.. ..-|..|+.+|.+.+...+.. +..+.. +.. ....+.. ...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4456799999999999999996 588999999999876432211 100111 111 1111111 122
Q ss_pred cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (328)
Q Consensus 227 ~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (328)
.+++.++.+.+|.|+=.+--+-+.+.-+-++.=...|+.++|. |+|. +-..++..+++. +-..+||-.|.+-|.
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~-~srf~GlHFfNPvPv 161 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQR-PSRFAGLHFFNPVPV 161 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccC-hhhhceeeccCCchh
Confidence 4566777788888765544333333223233334467777765 5554 556778888876 456789998887773
No 272
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.17 E-value=0.02 Score=53.66 Aligned_cols=79 Identities=19% Similarity=0.122 Sum_probs=51.9
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|+++.|||.|-+|+.++..| ...|+ +|++++|+..+. ++..+.++. ... ........++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhh----cCc-ceeccchhhhhhcccCCCEE
Confidence 36789999999999999999997 57887 699999986432 333222211 000 00000012344667889999
Q ss_pred EEcCCCC
Q 020301 241 SLHPVLD 247 (328)
Q Consensus 241 ~l~~plt 247 (328)
+.+.|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999964
No 273
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.16 E-value=0.027 Score=44.80 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=54.0
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEEEc
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH 243 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~l~ 243 (328)
+-|+|+|.+|+.+++.| +..+.+|++.|..+.... . ++..+.. .-.....+.+.+ +++||.|++.
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~-~--------~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVE-E--------LREEGVE-VIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHH-H--------HHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHH-H--------HHhcccc-cccccchhhhHHhhcCccccCEEEEc
Confidence 46999999999999998 566779999999875421 1 1222321 111122333332 6789999999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEE
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILV 269 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lI 269 (328)
.+.. ..++.-...++.+.+...+|
T Consensus 70 ~~~d--~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 70 TDDD--EENLLIALLARELNPDIRII 93 (116)
T ss_dssp SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence 8833 34444445556555655555
No 274
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.14 E-value=0.0095 Score=58.00 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=45.1
Q ss_pred EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEEcC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~ 244 (328)
|+|+|.|.+|+.+++.|++.... +|++.||+..... +..+. ......... ......+|+++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEK----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhh----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 68999999999999998665567 9999999976421 11110 000011101 1111234788999999999999
Q ss_pred CC
Q 020301 245 VL 246 (328)
Q Consensus 245 pl 246 (328)
|-
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 83
No 275
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.13 E-value=0.0079 Score=58.45 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.+||||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 47899999999999999984 7899999999998654
No 276
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.013 Score=53.07 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=49.4
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~ 244 (328)
+++.|+|+|+.|+.+|+.| ...|..|+..|++.....+...+++.... ... .......|+++ +.++|+++...
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~g-d~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIG-DATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence 4789999999999999997 68999999999987643221111111000 000 00112245565 78899999888
Q ss_pred CCCh
Q 020301 245 VLDK 248 (328)
Q Consensus 245 plt~ 248 (328)
..+.
T Consensus 75 ~~d~ 78 (225)
T COG0569 75 GNDE 78 (225)
T ss_pred CCCH
Confidence 7433
No 277
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.06 E-value=0.021 Score=57.07 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=63.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+|.|++|.|||.|.++..=++.| ..+|++|.++.|...+...+... .+. ..+....-.++.+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence 579999999999999999988877 47999999999876654433211 111 1111111123557889988
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+.+....+ +|+...+..+...+++|++
T Consensus 77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 77 IAATDDDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence 88866332 5555555565555667764
No 278
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.06 E-value=0.0091 Score=49.94 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=71.0
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCC-CCCccccc-cCCHHHHhhcCCEEEEcCC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV 245 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~~p 245 (328)
|+|+|.|.||.-+|-+|+ .-|.+|..+++... .+. ....+-...... ........ ..+..+-...+|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~~--~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSPR--LEA-IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHH-HTTCEEEEEESHHH--HHH-HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHH-HCCCceEEEEcccc--HHh-hhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 689999999999999984 58999999998761 121 111111111111 00000001 1112346788999999987
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa 295 (328)
..++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++.
T Consensus 77 -a~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 77 -AYQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp -GGGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred -ccchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 3455555543 44555677677766555 45567777777555665544
No 279
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.05 E-value=0.047 Score=53.18 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=60.4
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCCCCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP 221 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 221 (328)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..- .+.+...+.+.+. .....
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~v~ 206 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL---NPDVQ 206 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH---CCCCE
Confidence 4689999999999999999999984 7787 6888888621 1111111111000 01000
Q ss_pred c-cc-c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 222 V-TW-K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 222 ~-~~-~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
. .. . ...+++++++++|+|+.|+- +.+++.++|+...+.-+
T Consensus 207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~~~i 251 (376)
T PRK08762 207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVKLGK 251 (376)
T ss_pred EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 0 00 0 11245678899999888765 56788888776655433
No 280
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.96 E-value=0.029 Score=50.73 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc-ccCCHHHHhhcCC
Q 020301 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREAD 238 (328)
Q Consensus 160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 238 (328)
.-.+.|++|.|||.|.++..=++.| ..+|++|.++.|...+...+... .+. ..+. +..+. +-+..++
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~~ 87 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDKH 87 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCCc
Confidence 3567899999999999999988876 47999999999987665443211 111 1111 11232 3457889
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
+|+.+... ++ +|+...+..+...+++|+
T Consensus 88 LViaATdD-~~----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 88 LIVIATDD-EK----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred EEEECCCC-HH----HHHHHHHHHHHcCCeEEE
Confidence 88888662 22 444444444443344554
No 281
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.96 E-value=0.039 Score=52.15 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=61.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
++|+|||.|.+|+.+|..| ...| -+|..+|+..... +.....+.......+ .... ....+.+ .++.||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~-i~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVK-IKAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeE-EEcCCHH-HhCCCCEEEEc
Confidence 4799999999999999987 4667 4899999976542 221111100000000 0001 1123444 47999999998
Q ss_pred CCCChh---hh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301 244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEV 280 (328)
Q Consensus 244 ~plt~~---t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~ 280 (328)
...... ++ .++. .+.+.+..|.+++|+++ ..+|.-
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~ 123 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVI 123 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHH
Confidence 874211 11 1111 22344556789999996 445433
No 282
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.95 E-value=0.07 Score=53.04 Aligned_cols=123 Identities=19% Similarity=0.160 Sum_probs=68.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC-------c--hhHH---HHHHhhhhhhhhcCCCCCcccccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRL---EKFVTAYGQFLKANGEQPVTWKRA 227 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~-------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.++.|+|+.|=|+|++|+..|+.| ..+|++|+ +.|.+ - .+.+ .++..........-.....+.. +
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~-~ 310 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK-Y 310 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-E
Confidence 579999999999999999999997 68999999 44444 0 1111 0000000000000000000111 1
Q ss_pred CCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 228 SSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 228 ~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~m-k~ga-~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
.+-++++ -.||+++-| .|.+.|+.+..+.+ +.++ +++--|-+++-. +|- +.|++..|.
T Consensus 311 ~~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~-~~L~~~GI~ 371 (454)
T PTZ00079 311 VPGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EAT-HLFKKNGVI 371 (454)
T ss_pred eCCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHH-HHHHHCCcE
Confidence 1222332 469999766 46888988887766 4444 444556666544 433 455555443
No 283
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.93 E-value=0.02 Score=62.34 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-------------EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (328)
..|+|+|||.|.||+..|+.|++.-+.+ |.+.|++.... ++..+.| .+...... .+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence 4779999999999999999986444444 88899886542 2222111 01111111 12344
Q ss_pred H---HHhhcCCEEEEcCCC
Q 020301 231 D---EVLREADVISLHPVL 246 (328)
Q Consensus 231 ~---ell~~aDiV~l~~pl 246 (328)
+ ++++++|+|++++|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 4 445789999999994
No 284
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.024 Score=55.91 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.+++.|||+|.+|+++|+.| +..|.+|.++|++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 46899999999999999997 689999999998754
No 285
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.92 E-value=0.044 Score=56.57 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccc-ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEc
Q 020301 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD 196 (328)
Q Consensus 119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~-~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d 196 (328)
.....||.++-|=|-+.| |+-.... ...|.+.+|.|+|.|.+|..+|+.| .+.|. ++..+|
T Consensus 307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence 344567777766665543 3322111 2568999999999999999999998 48887 577777
Q ss_pred CCchh----------HHHH-------HHhhhhhhhhcC--CCC--Ccccc------------------ccCCHHHHhhcC
Q 020301 197 LYQAT----------RLEK-------FVTAYGQFLKAN--GEQ--PVTWK------------------RASSMDEVLREA 237 (328)
Q Consensus 197 ~~~~~----------~~~~-------~~~~~~~~~~~~--~~~--~~~~~------------------~~~~l~ell~~a 237 (328)
...-. ..+. ....-.+.+++- +.. ..... ....++++++++
T Consensus 370 ~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~ 449 (664)
T TIGR01381 370 NGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449 (664)
T ss_pred CCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhC
Confidence 53210 0000 000000000100 000 00000 012467899999
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+|+.|+- +.++|.+++......- ..+||.+
T Consensus 450 DvV~d~tD-n~esR~L~n~~c~~~~---kplI~aA 480 (664)
T TIGR01381 450 DVVFLLLD-SREARWLPTVLCSRHK---KIAISAA 480 (664)
T ss_pred CEEEECCC-CHHHHHHHHHHHHHhC---CCEEEEE
Confidence 99999986 7899998887766543 3455544
No 286
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.90 E-value=0.047 Score=53.79 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=62.7
Q ss_pred ccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (328)
Q Consensus 162 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (328)
.+.|++|+|+|+ .+-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence 478999999998 45677899997 58899999999986432110 0 01236889
Q ss_pred HHhhcCCEEEEcCCCChhhhccccHHHHhc-CCCCcEEEEc
Q 020301 232 EVLREADVISLHPVLDKTTYHLINKERLAT-MKKEAILVNC 271 (328)
Q Consensus 232 ell~~aDiV~l~~plt~~t~~li~~~~~~~-mk~ga~lIN~ 271 (328)
+.++.||.|+++.+ -++.+. ++-+.+.. |+ ..+++++
T Consensus 372 ~~~~~ad~~v~~t~-~~~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTD-HDEFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecC-CHHHhc-cCHHHHHHhcC-CCEEEeC
Confidence 99999999999987 344444 45444444 55 5577774
No 287
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.86 E-value=0.023 Score=54.66 Aligned_cols=97 Identities=21% Similarity=0.193 Sum_probs=61.8
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh--------------------HHHHHHhhhhhhhhcC-C
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKAN-G 218 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~-~ 218 (328)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-+ +.+...+ .+++- .
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~----~l~~inp 94 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK----RLEEINS 94 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH----HHHHHCC
Confidence 4699999999999999999999985 6787 89999985310 0000000 01100 0
Q ss_pred CCCccc----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 219 ~~~~~~----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
...... ....++.++++.+|+|+.+.- +.+++.++|+...+.=+
T Consensus 95 ~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~i 142 (339)
T PRK07688 95 DVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKYGI 142 (339)
T ss_pred CcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCC
Confidence 000000 012346788999999988865 67888888877665433
No 288
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.81 E-value=0.22 Score=52.65 Aligned_cols=165 Identities=21% Similarity=0.286 Sum_probs=108.7
Q ss_pred hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
+..|+|.|+-- +.+|=-+++-+++.+|- .|..+...++.|.|.|.-|-.+|+.| .
T Consensus 151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~ 205 (752)
T PRK07232 151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V 205 (752)
T ss_pred hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence 34688888733 34566777777776662 24578889999999999999999997 5
Q ss_pred cCCc---EEEEEcCCch---hH---HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHH
Q 020301 187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (328)
Q Consensus 187 ~fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~ 257 (328)
..|. +++.+|+.-- .+ ...+...|. +. ....+|.|+++.+|+++=. . +.++|+++
T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a---~~--------~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~ 269 (752)
T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA---VD--------TDARTLAEAIEGADVFLGL-S----AAGVLTPE 269 (752)
T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh---cc--------CCCCCHHHHHcCCCEEEEc-C----CCCCCCHH
Confidence 6788 7999986521 00 111111221 11 1235899999999988643 2 25899999
Q ss_pred HHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301 258 RLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (328)
Q Consensus 258 ~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (328)
.++.|.+..++.=.|.... +..+..+++ ..|.|.+-|- ...| -+..|+++-|-++
T Consensus 270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------nQ~NN~~~FPgi~ 325 (752)
T PRK07232 270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIF 325 (752)
T ss_pred HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECC---cCCC------Ccccceeecchhh
Confidence 9999999999999988765 233333333 2245655551 1122 2356888887654
No 289
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.75 E-value=0.093 Score=52.77 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=71.6
Q ss_pred ccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhh----hhhcCC------CCC
Q 020301 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 221 (328)
Q Consensus 162 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 221 (328)
.+.|++|+|+|+ .+-...+++.| ...|.+|.+|||........ ..|+. |..... ..+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 56778899997 58899999999985431110 01100 000000 000
Q ss_pred ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV 283 (328)
Q Consensus 222 ~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~-~~~~mk~ga~lIN~aRG~~vde~aL~ 283 (328)
.......++++.++.||+|+++.+- ++.+. ++-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 0112234677899999999999873 44444 3433 35668766688986 43 56766654
No 290
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.75 E-value=0.062 Score=50.78 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=57.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cCC
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD 238 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD 238 (328)
..++||||.|.||+..+..+.+.-++++. ++|++++.....+. ++.|.. ..+.+.+++++ +.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~Gi~----~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLGVA----TSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcCCC----cccCCHHHHHhCcCCCCCC
Confidence 35799999999999977765444466765 56776543211111 111211 12367889885 578
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC---CCcc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV 276 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a---RG~~ 276 (328)
+|+.+.|. ++.. +-.....+.|..+|+-+ +|++
T Consensus 73 iVf~AT~a--~~H~---e~a~~a~eaGk~VID~sPA~~~Pl 108 (302)
T PRK08300 73 IVFDATSA--GAHV---RHAAKLREAGIRAIDLTPAAIGPY 108 (302)
T ss_pred EEEECCCH--HHHH---HHHHHHHHcCCeEEECCccccCCc
Confidence 89999883 2222 22223346788888775 5555
No 291
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.74 E-value=0.016 Score=51.38 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=43.2
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
+++|||- |.+|+.+++.+ +..|..|. +++||+|++|+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP 40 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP 40 (197)
T ss_pred EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence 7899999 99999999997 67887773 357899999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
- ..+..++ +.+. .++++++.-
T Consensus 41 v-~~~~~~i-----~~~~--~~v~Dv~Sv 61 (197)
T PRK06444 41 I-DAALNYI-----ESYD--NNFVEISSV 61 (197)
T ss_pred H-HHHHHHH-----HHhC--CeEEecccc
Confidence 3 2333333 3333 368888663
No 292
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.74 E-value=0.018 Score=48.20 Aligned_cols=106 Identities=21% Similarity=0.374 Sum_probs=60.2
Q ss_pred EEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|+|||. |.+|+.+|-.|. ++++-++..+|+..........+ +...... ............+.++.||+|+++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~~---~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD-LSHASAP---LPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-HHHHHHG---STEEEEEEESSGGGGTTESEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh-hhhhhhh---cccccccccccccccccccEEEEec
Confidence 7999999 999999998764 36677899999986432111111 1110000 0011111225567789999999987
Q ss_pred C--CCh-hhh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccC
Q 020301 245 V--LDK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVID 278 (328)
Q Consensus 245 p--lt~-~t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vd 278 (328)
- ..+ +++ .++ | .+.+.+..|.++++.++ ..+|
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd 122 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD 122 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence 3 333 222 111 1 12333445788888884 3455
No 293
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.73 E-value=0.041 Score=49.31 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=58.6
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh-----------------HHHHHHhhhhhhhhcC-CCCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----------------RLEKFVTAYGQFLKAN-GEQP 221 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~ 221 (328)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-. +.+..... +++- ....
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~----l~~lnp~v~ 98 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKEN----LLEINPFVE 98 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHH----HHHHCCCCE
Confidence 4689999999999999999999985 5676 48888876210 00000000 0000 0000
Q ss_pred ccc--c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 222 VTW--K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 222 ~~~--~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
... . ...+++++++++|+|+.|+- +.+++..++....+..+
T Consensus 99 v~~~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~ 143 (212)
T PRK08644 99 IEAHNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEHPG 143 (212)
T ss_pred EEEEeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHhCC
Confidence 000 0 11235578899999988864 66777777766555433
No 294
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.73 E-value=0.048 Score=50.60 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=44.5
Q ss_pred EEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+|+|+| +|+||+.+++.+...-++++.+ +|+........... +..+..+.+...+.+++++...+|+|+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence 799999 7999999999875456888665 66432211000000 001111122333468888866799999987
Q ss_pred C
Q 020301 245 V 245 (328)
Q Consensus 245 p 245 (328)
|
T Consensus 77 ~ 77 (266)
T TIGR00036 77 T 77 (266)
T ss_pred C
Confidence 6
No 295
>PRK12862 malic enzyme; Reviewed
Probab=95.72 E-value=0.32 Score=51.75 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=108.2
Q ss_pred CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhc
Q 020301 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (328)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~ 187 (328)
.+|++.|+-- +.+|=.+++-+++.+|- .|..+...++.|.|.|.-|-.+|+.| ..
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 214 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS 214 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence 3689998733 34566777778876662 24578889999999999999999997 46
Q ss_pred CCc---EEEEEcCCch-----hH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301 188 FKM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (328)
Q Consensus 188 fg~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~ 258 (328)
.|. +++.+|+.-- +. ...+...|. +.. ...+|.|+++.+|+++=.- +.++|+++.
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~~--------~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~ 278 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QKT--------DARTLAEVIEGADVFLGLS-----AAGVLKPEM 278 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hhc--------ccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 788 7999995410 00 111111221 111 1258999999999986431 258999999
Q ss_pred HhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301 259 LATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (328)
Q Consensus 259 ~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (328)
++.|.+..++.=.|.-.. +..+..+++ ..|.|.+.|-. ..| -+..|+++-|-++
T Consensus 279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs---~~p------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGRS---DYP------NQVNNVLCFPYIF 333 (763)
T ss_pred HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECCc---CCC------Ccccceeeccchh
Confidence 999999999999988664 122333333 22455555511 112 2357888888664
No 296
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.72 E-value=0.032 Score=51.16 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=63.3
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhcCC-CCCcc-
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANG-EQPVT- 223 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~-~~~~~- 223 (328)
..|..++|+|||.|.+|..+|+.|+ ..|. ++..+|...-.. +.. ..+...+.+++-. .....
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 5699999999999999999999985 5675 688887653210 000 0000000011000 00000
Q ss_pred c-cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 224 W-KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 224 ~-~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
. .. ..+++++++++|+|+.|+- +.+++..+++...+..+| +|..
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip---~v~~ 153 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKP---LVSG 153 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCE---EEEe
Confidence 0 01 1235678999999998874 778888888877765443 5554
No 297
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.69 E-value=0.09 Score=50.55 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=71.5
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
.+.|.+|+++|= .++.++++..+ ..||++|.++.|..-...+...+.-...+...| .......++++.+++||+|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv 226 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV 226 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence 588999999997 57888888876 589999999987632111111110000001111 1123347999999999999
Q ss_pred EEcC-----CCCh--hh-------hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301 241 SLHP-----VLDK--TT-------YHLINKERLATMKKEAILVNCS---RGPVIDEV 280 (328)
Q Consensus 241 ~l~~-----plt~--~t-------~~li~~~~~~~mk~ga~lIN~a---RG~~vde~ 280 (328)
..-. .... +. .--++++.++.+|+++++.-+. ||.=|+.+
T Consensus 227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~ 283 (338)
T PRK02255 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDE 283 (338)
T ss_pred EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHH
Confidence 8722 2100 11 2457899999999998887763 65544433
No 298
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.67 E-value=0.16 Score=50.27 Aligned_cols=102 Identities=14% Similarity=0.246 Sum_probs=67.6
Q ss_pred ccCCCEEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
.+.|+||+++|-+ ++..+++..+ ..| ||+|.+..|..-...++..+. ++..| .......++++.++.|
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence 4889999999994 8899999886 465 999999887542211222111 11112 1223357999999999
Q ss_pred CEEEEcCCCChh----------hhccccHHHHhc-CCCCcEEEEc
Q 020301 238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC 271 (328)
Q Consensus 238 DiV~l~~plt~~----------t~~li~~~~~~~-mk~ga~lIN~ 271 (328)
|+|....-..+. ..--++++.++. .|+++++.-+
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 999874421111 013468899998 8999988854
No 299
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.63 E-value=0.058 Score=52.68 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=73.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh----------HHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (328)
.++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+... .+.+..+..+..... .+... .+-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~-----~ga~~-i~~ 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEY-----AGAEY-ITN 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhh-----cCceE-ccc
Confidence 359999999999999999999997 5779999999876540 000000000000000 01112 233
Q ss_pred HHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 231 ~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
++++. .|||++-| .+.+.|+.+...++|-. +++-.+-|++- .+|--..++.|
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG 328 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG 328 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence 55544 69998644 66889999999999876 78888888865 33333333555
No 300
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.63 E-value=0.082 Score=50.37 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV 239 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi 239 (328)
.|++|.|+|.|.+|...++.+ +..|+ +|++.++++... +... +-|....-.....+++++.. ..|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~--~~a~-------~lGa~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL--SLAR-------EMGADKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH--HHHH-------HcCCcEEecCCcccHHHHhccCCCCCE
Confidence 589999999999999999984 89999 688888775432 1212 22321111111123444433 2799
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
++-+... +++ -...++.++++..++.++.
T Consensus 239 vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 239 SFEVSGH-PSS----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence 9888662 221 2456788999999999875
No 301
>PRK11579 putative oxidoreductase; Provisional
Probab=95.62 E-value=0.043 Score=52.64 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=43.9
Q ss_pred CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 241 (328)
-++||||+|.||+. .+..+.+.-++++. ++|++..... +.| + ....+.+++++++ .-|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK----ADW-------P----TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH----hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence 37999999999985 45654333478876 4677653211 111 0 1123579999996 479999
Q ss_pred EcCCC
Q 020301 242 LHPVL 246 (328)
Q Consensus 242 l~~pl 246 (328)
+|.|.
T Consensus 70 I~tp~ 74 (346)
T PRK11579 70 IPTPN 74 (346)
T ss_pred EcCCc
Confidence 99994
No 302
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.62 E-value=0.1 Score=49.33 Aligned_cols=111 Identities=25% Similarity=0.330 Sum_probs=72.0
Q ss_pred ccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+.|++|+++|-| ++.++++..+ ..||++|.+..|..-...++..+ .++..| .......++++.++.||
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~----~~~~~G---~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILE----ELKAKG---IKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHH----HHHHcC---CEEEEECCHHHHhCCCC
Confidence 4789999999995 9999999986 68999999998754311122211 112212 12223579999999999
Q ss_pred EEEEcCCC-----Chhh------hccccHHHHhcCCCCcEEEEc-CCCcccCHH
Q 020301 239 VISLHPVL-----DKTT------YHLINKERLATMKKEAILVNC-SRGPVIDEV 280 (328)
Q Consensus 239 iV~l~~pl-----t~~t------~~li~~~~~~~mk~ga~lIN~-aRG~~vde~ 280 (328)
+|...--. ..+. .--++++.++.+|+++++.-+ =||.=|+.+
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~ 272 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS 272 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence 99663210 0011 223578888889999888844 466544443
No 303
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.53 E-value=0.047 Score=50.42 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=67.3
Q ss_pred cccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 159 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
.|.+|...|++|+|+ |.||..+||.| .+-+++....-|.......+... | + ..+.+.....+++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~-~---l----~e~~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLT-L---L----QEELGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhh-h---c----ccccCCCeeeecccccccc
Confidence 478999999999997 99999999997 46666655554433221111000 0 0 0112222345677666666
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~ 280 (328)
|+++-... ..+-..|+... +|||+.+|+-++..=||+.
T Consensus 232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 66643322 23345566654 6899999999998777664
No 304
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.51 E-value=0.14 Score=48.17 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=67.1
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhh
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR 235 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~ 235 (328)
++.|+++.|+|.|-.+++++-.|+ ..|+ +|.+++|+.. .+.+...+.+.. ........... ..+.+.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhcc
Confidence 468899999999999999998764 5676 8999999853 223333222210 00000011111 11334567
Q ss_pred cCCEEEEcCCCChh--hhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 236 ~aDiV~l~~plt~~--t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
++|+|+.+.|..-. +.. ++.. .+.++++.++.++-=.+ ..+.-|.+|-+.|
T Consensus 196 ~aDivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 249 (288)
T PRK12749 196 SADILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNP-HMTKLLQQAQQAG 249 (288)
T ss_pred cCCEEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCC-ccCHHHHHHHHCC
Confidence 89999999986322 111 1111 23356777787775333 3444444444434
No 305
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.47 E-value=0.23 Score=48.43 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=78.5
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH----------HHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL----------EKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (328)
.++.|+|.|-+|...+-.| ..+|-+|+.+|..+.+-. |.-.++ .+++ ....-.....++.++.++
T Consensus 1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~---ll~~-~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVELLNKGISPIYEPGLEE---LLKE-NLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHH---HHHh-ccccCcEEEEcCHHHHHh
Confidence 3689999999999999998 589999999998765311 000111 1111 111111223468889999
Q ss_pred cCCEEEEcCCCChhhhcccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 236 EADVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 236 ~aDiV~l~~plt~~t~~li~--------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
.||++++++|..+.-.+-+| ++..+.++..+++|+=|.-.+=-.+.+.+-+.+.
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~ 137 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE 137 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence 99999999995544344343 4556667776999999887665555555555443
No 306
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.38 E-value=0.064 Score=50.81 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=46.1
Q ss_pred EEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCC-C-CCccccccCCHHHHhhcCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+|+|||.|.+|..+|..++ ..| -+|..+|++......+..+. .+.. . .+.. ....+. +.++.||+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~-i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVR-IYAGDY-ADCKGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeE-EeeCCH-HHhCCCCEEEE
Confidence 6999999999999999874 556 58999999764321111111 0000 0 0011 112344 45899999999
Q ss_pred cCCCC
Q 020301 243 HPVLD 247 (328)
Q Consensus 243 ~~plt 247 (328)
+.+..
T Consensus 74 ta~~~ 78 (308)
T cd05292 74 TAGAN 78 (308)
T ss_pred ccCCC
Confidence 99853
No 307
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.051 Score=54.83 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=68.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+. ++..|.. ........+.++.+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~~---~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGVA---TVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCCE---EEcCcchHhHhhcCCEEEE
Confidence 5789999999999999999986 7999999999965432 211 1122221 1111123455788998877
Q ss_pred cCCCChhhh----------ccccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 243 ~~plt~~t~----------~li~~~~~~-~m--------k~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.-.-.+... .++++-.|. .. +...+-|--+-|..--..-+...|+.
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 643222211 133333332 11 11244555567888777778888875
No 308
>PRK12861 malic enzyme; Reviewed
Probab=95.32 E-value=0.45 Score=50.40 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=105.7
Q ss_pred CceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcC
Q 020301 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (328)
Q Consensus 109 gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~f 188 (328)
.|++.|+-- +.+|=-+++-+++.+|- .|..+...++.|.|.|.-|-.+|+.| ...
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 688888733 34566777777777662 24578889999999999999999997 577
Q ss_pred Cc---EEEEEcCCc-----hhH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHH
Q 020301 189 KM---NLIYYDLYQ-----ATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (328)
Q Consensus 189 g~---~V~~~d~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~ 259 (328)
|. +++.+|+.- .+. ...+...|. +.. ...+|.|+++.+|+++=. . +.++|+++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a---~~~--------~~~~L~eai~~advliG~-S----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA---QET--------DARTLAEVIGGADVFLGL-S----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH---hhc--------CCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence 88 799999542 000 111111221 110 125899999999988533 2 2589999999
Q ss_pred hcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-ccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301 260 ATMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (328)
Q Consensus 260 ~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (328)
+.|.+..++.=.|.... +..+..++ ..|+ |.+-|-- ..| -+..|+++-|-|+
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGrs---~~p------nQ~NN~l~FPgi~ 329 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGRS---DYP------NQVNNVLCFPYIF 329 (764)
T ss_pred HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCCc---CCC------Cccceeeecchhh
Confidence 99999999999888664 12232232 3344 3333111 112 3457888888664
No 309
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.28 E-value=0.057 Score=46.83 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=54.2
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-H----------HHhhhhhhhhcC-CCCCccc----ccc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K----------FVTAYGQFLKAN-GEQPVTW----KRA 227 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-~----------~~~~~~~~~~~~-~~~~~~~----~~~ 227 (328)
+|+|+|.|.+|..+|+.|+ ..|. ++..+|...-.. +. . ..+.....+++- ....... ...
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4899999999999999985 6677 588888765100 00 0 000000001100 0000000 011
Q ss_pred CCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (328)
Q Consensus 228 ~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~ 261 (328)
.+++++++++|+|+.|. .+.+++..++....++
T Consensus 80 ~~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 80 NNLEGLFGDCDIVVEAF-DNAETKAMLAESLLGN 112 (174)
T ss_pred hhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 24567899999999884 4788888777766655
No 310
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.27 E-value=0.076 Score=47.04 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=57.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------HH-----HhhhhhhhhcCC-CCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------KF-----VTAYGQFLKANG-EQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-------~~-----~~~~~~~~~~~~-~~~~~~ 224 (328)
..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-.. +. +. .+.-.+.+++-. ......
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 5699999999999999999999985 6787 588888763211 00 00 000000000000 000000
Q ss_pred --ccc-CCHHHHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301 225 --KRA-SSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (328)
Q Consensus 225 --~~~-~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~ 260 (328)
... ...++.++++|+|+.+++ +.+++..+|+...+
T Consensus 96 ~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~ 133 (197)
T cd01492 96 DTDDISEKPEEFFSQFDVVVATEL-SRAELVKINELCRK 133 (197)
T ss_pred EecCccccHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 001 234577899999998876 46677777765544
No 311
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.25 E-value=0.2 Score=44.89 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=63.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-----hhcC
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA 237 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a 237 (328)
..|+++.|.|.|.+|+.+++.+ +..|.+|++.+++.... ++...+ +....-.....+..+. -...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL--ELAKEL-------GADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH--HHHHHh-------CCceeccCCcCCHHHHHHHhcCCCC
Confidence 3578999999999999999985 78999999998875431 111111 1111000011122221 2458
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v 277 (328)
|+++.+++... .-...++.|+++..+++.+.....
T Consensus 203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~~~ 237 (271)
T cd05188 203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTSGG 237 (271)
T ss_pred CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCCCC
Confidence 99998876321 235567888999999998765543
No 312
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.22 E-value=0.11 Score=49.04 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=71.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
.+++|+|.|.||.-+|-.|+ ..|.+|..++|... ..+.....-+-.....+.. ..+.....-.+.....|+|++++=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 46999999999999999984 67999999998642 2221111000001111110 000000111123468899999975
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal 296 (328)
. .++...+ +.....+.+++.+|-.--| +-.++.+.+.+.+.++.++..
T Consensus 80 ~-~~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 80 A-YDAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred H-HhHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 3 3344433 3445556788877766544 345667777776666665543
No 313
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.20 E-value=0.13 Score=49.42 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=65.4
Q ss_pred EEEEEecCHHHHHHHHHHHh---------cCCcEEEE-EcCCch-----h-HHHHHHhhhhhhhhcCCCCCc--cccccC
Q 020301 167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQPV--TWKRAS 228 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~---------~fg~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 228 (328)
+|||+|+|.||+.+++.+.+ +++++|.+ +|+... . ..++. .. +....+.... ......
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~-~~---~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA-LK---VKEETGKLADYPEGGGEI 79 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH-HH---HHhccCCcccCccccccC
Confidence 69999999999999998642 23677664 454210 0 00110 00 1111111000 001124
Q ss_pred CHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 020301 229 SMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (328)
Q Consensus 229 ~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i 291 (328)
++++++. ..|+|+.+.|....+...--+-....++.|.-+|-..-+.+ ..-+.|.++.++...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8888884 67999999996554332222223455666766666544443 245677777766543
No 314
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.19 E-value=0.043 Score=54.33 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=47.9
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc-c-ccccCCHHHH-hhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l 242 (328)
+++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.... ..+.... + ......++++ +..+|.|++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 3689999999999999997 67899999999876532 11100 0111000 0 0112345566 789999999
Q ss_pred cCCCC
Q 020301 243 HPVLD 247 (328)
Q Consensus 243 ~~plt 247 (328)
+++..
T Consensus 72 ~~~~~ 76 (453)
T PRK09496 72 VTDSD 76 (453)
T ss_pred ecCCh
Confidence 98843
No 315
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.17 E-value=0.4 Score=46.98 Aligned_cols=167 Identities=21% Similarity=0.192 Sum_probs=103.2
Q ss_pred hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
+..|+|.|+-- ..+|=.+++-+++.+|- .|..|...++.+.|.|.-|-.+++.+ .
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 34577777543 34566777777766652 35689999999999999999999997 6
Q ss_pred cCCc---EEEEEcCCch---hH----HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 187 GFKM---NLIYYDLYQA---TR----LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 187 ~fg~---~V~~~d~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
+.|+ +|+.+|+.-- .+ ..++..+|. .+ . ...... ++.+..+|+++=+ ++.+.|.+
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a---~~-~-----~~~~~~-~~~~~~adv~iG~-----S~~G~~t~ 284 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA---IE-D-----TGERTL-DLALAGADVLIGV-----SGVGAFTE 284 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHH---Hh-h-----hccccc-cccccCCCEEEEc-----CCCCCcCH
Confidence 8888 6999987621 00 011111110 00 0 000111 4588999998655 22399999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301 257 ERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (328)
+.++.|.+..++.=.|--.. +..++..++=+...|.+-| -| +.|- +..|+++-|.|+
T Consensus 285 e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rs--d~Pn-QvNNvL~FPgIf 342 (432)
T COG0281 285 EMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RS--DYPN-QVNNVLIFPGIF 342 (432)
T ss_pred HHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CC--CCcc-cccceeEcchhh
Confidence 99999999999988876552 2333333221111333332 12 1111 678999999875
No 316
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.10 E-value=0.091 Score=50.67 Aligned_cols=101 Identities=16% Similarity=0.263 Sum_probs=56.9
Q ss_pred CEEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.+|+|+|. |.+|+++++.|. .. +.++.+ +++..... +...+.|. +.. +.....+ ...+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~-~~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNL-EPIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence 37999998 999999999974 55 678774 45443210 00101110 000 1001111 11255677678999999
Q ss_pred cCCCChhhhccccHHHHhcC-CCCcEEEEcCCCcccC
Q 020301 243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID 278 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~~vd 278 (328)
|+|.. .. ++....+ +.|..+|+.|-.-=.+
T Consensus 75 alP~~-~s-----~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 75 ALPHG-VS-----AELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred CCCch-HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence 99932 22 3333332 5688999987443344
No 317
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.09 E-value=0.12 Score=42.94 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.9
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~ 198 (328)
++.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 4899999999999999984 6787 78899876
No 318
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.08 E-value=1.6 Score=41.53 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=49.0
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh-H-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+.|+||++||- +++.++++..+ ..||++|.+..|..-. . .++..+ .++..+ ......++++.+++||
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~----~~~~~g----~i~~~~d~~~av~~aD 220 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVE----RAKKKG----TLSWEMNLHKAVSHAD 220 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHH----HHHhcC----CeEEEeCHHHHhCCCC
Confidence 478999999997 68999999986 5899999999885421 1 111000 011112 1122468999999999
Q ss_pred EEEE
Q 020301 239 VISL 242 (328)
Q Consensus 239 iV~l 242 (328)
+|..
T Consensus 221 vvy~ 224 (311)
T PRK14804 221 YVYT 224 (311)
T ss_pred EEEe
Confidence 9976
No 319
>PLN02527 aspartate carbamoyltransferase
Probab=95.03 E-value=0.21 Score=47.34 Aligned_cols=110 Identities=19% Similarity=0.349 Sum_probs=70.0
Q ss_pred ccCCCEEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
.+.|.+|+++|-+ ++.++++..+ ..| |++|.+..|..-...+++.+ .++..| ..+....++++.++.|
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSKG---VEWEESSDLMEVASKC 219 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHcC---CEEEEEcCHHHHhCCC
Confidence 3789999999965 6889999886 466 99999888743211111111 112212 1223347899999999
Q ss_pred CEEEEcCCCCh------h-h-----hccccHHHHhcCCCCcEEEEc-CCCcccCH
Q 020301 238 DVISLHPVLDK------T-T-----YHLINKERLATMKKEAILVNC-SRGPVIDE 279 (328)
Q Consensus 238 DiV~l~~plt~------~-t-----~~li~~~~~~~mk~ga~lIN~-aRG~~vde 279 (328)
|+|....-..+ + - .-.++++.++..|+++++.-+ -||.=|+.
T Consensus 220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~ 274 (306)
T PLN02527 220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITT 274 (306)
T ss_pred CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccH
Confidence 99977442111 0 1 244678888889999888855 46644433
No 320
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.02 E-value=0.07 Score=52.75 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=51.3
Q ss_pred ccccCCCEEEEEec----------CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC
Q 020301 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (328)
Q Consensus 160 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
+.++.|++|+|+|+ .+-...+++.| ...| ++|.+|||........ + .. .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~----------~~-~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L----------DG-LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c----------cC-ceeeC
Confidence 45689999999998 55777899997 5775 9999999985321000 0 00 11236
Q ss_pred CHHHHhhcCCEEEEcCC
Q 020301 229 SMDEVLREADVISLHPV 245 (328)
Q Consensus 229 ~l~ell~~aDiV~l~~p 245 (328)
++++.++.||.|+++.+
T Consensus 379 ~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 379 SLDEALATADVLVMLVD 395 (415)
T ss_pred CHHHHHhCCCEEEECCC
Confidence 88999999999999987
No 321
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.96 E-value=2.2 Score=41.08 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=46.9
Q ss_pred c-CCCEEEEEecC-------HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (328)
Q Consensus 163 l-~g~tvgIiG~G-------~IG~~vA~~l~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (328)
+ .|++++|+|.| ++.++++..+ ..||++|.+..| ..-...++..+.--+.+...| .......++++.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 5 68999887654 7888888876 589999999998 321111111110000011112 122335799999
Q ss_pred hhcCCEEEEc
Q 020301 234 LREADVISLH 243 (328)
Q Consensus 234 l~~aDiV~l~ 243 (328)
+++||+|..-
T Consensus 242 ~~~aDvvy~~ 251 (335)
T PRK04523 242 YAGADVVYAK 251 (335)
T ss_pred hCCCCEEEec
Confidence 9999999653
No 322
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.95 E-value=0.048 Score=56.19 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=49.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREA 237 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~a 237 (328)
..+..|+|||||-|..|+.+++.+ +.+|.+|+++|+.+......+.+.+ ....+.+ +.++.+++
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~------------~v~~~~D~~~l~~~a~~~ 84 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH------------VVGSFDDRAAVREFAKRC 84 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee------------eeCCCCCHHHHHHHHHHC
Confidence 348899999999999999999985 7899999999987643211111000 0011233 55667889
Q ss_pred CEEEEcCCC
Q 020301 238 DVISLHPVL 246 (328)
Q Consensus 238 DiV~l~~pl 246 (328)
|+|+.+...
T Consensus 85 dvIt~e~e~ 93 (577)
T PLN02948 85 DVLTVEIEH 93 (577)
T ss_pred CEEEEecCC
Confidence 998765443
No 323
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.90 E-value=0.061 Score=52.56 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEE
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI 240 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV 240 (328)
-..++|+|+|. |.+|+++.+.|...=+++|..+.+..... +.+.+.+ .+... + . .....++++ .++++|+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDAV 108 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCEE
Confidence 35568999998 99999999997533377888776543211 0000001 00000 0 0 011122222 25889999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~ 284 (328)
++++|. . ...+....|+.|..+|+.|-.-..+.++.++
T Consensus 109 f~Alp~-~-----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 109 FCCLPH-G-----TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred EEcCCH-H-----HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 999994 2 3344445566789999998766666655544
No 324
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.90 E-value=0.068 Score=51.46 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=54.8
Q ss_pred CEEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEEE
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~ 241 (328)
.+++|+|. |.+|+.+++.+. .. ++++.+ +++..... ...+.|. +. .+.... .+.++++ ...++|+|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf 73 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVF 73 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEE
Confidence 58999997 999999999974 44 677655 55322110 0101110 00 000010 1223332 457899999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde 279 (328)
+|+|.. ....+. . ...+.|..+|+.|-.--.+.
T Consensus 74 ~alP~~-~~~~~v-~---~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 74 LALPHG-VSMDLA-P---QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred ECCCcH-HHHHHH-H---HHHhCCCEEEECCcccCCCC
Confidence 999942 212211 1 22357899999985444444
No 325
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.35 Score=45.33 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=75.3
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
....|+++.|+|.|-.+++++..| +..|+ +|.+++|+.+. .++..+.|.. .+. ........+++.+ .++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence 356899999999999999999997 57885 79999998754 2333332211 110 0001111222222 27999
Q ss_pred EEEcCCCChhhhc---cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301 240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (328)
Q Consensus 240 V~l~~plt~~t~~---li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 291 (328)
|+.+.|..-.-.. +++ ...++++.++.++-=.+. ++.-|..|=+.|..
T Consensus 194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~~ 244 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGAK 244 (283)
T ss_pred EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCCe
Confidence 9999997654431 333 566788999999865543 55556666555643
No 326
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.87 E-value=0.15 Score=47.85 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=51.9
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~ 243 (328)
++||||.|.||+..+..+.+.-++++. ++|++++....+.. ++.|.. ..+.+.+++++ +-|+|+++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi~----~~~~~~e~ll~~~dIDaV~ia 71 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGVK----TSAEGVDGLLANPDIDIVFDA 71 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCCC----EEECCHHHHhcCCCCCEEEEC
Confidence 699999999999887665433356765 46766543211111 111211 12357888886 57889999
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
.|.. ++. +-....++.|..+|+-
T Consensus 72 Tp~~--~H~---e~a~~al~aGk~VIde 94 (285)
T TIGR03215 72 TSAK--AHA---RHARLLAELGKIVIDL 94 (285)
T ss_pred CCcH--HHH---HHHHHHHHcCCEEEEC
Confidence 9832 222 2223334556666554
No 327
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.82 E-value=0.11 Score=48.94 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=59.7
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH-----------------------HHHHHhhhhhhhhcCCCC--
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-----------------------LEKFVTAYGQFLKANGEQ-- 220 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~-- 220 (328)
+|.|+|.|.+|..+|+.|+ ..|. ++..+|...-.. ..+...+.....+-.+..
T Consensus 1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 5899999999999999984 7776 677777542110 000000000000000000
Q ss_pred ------Cc-------cccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 221 ------PV-------TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 221 ------~~-------~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+. .......++++++++|+|+.++ .+-++|.+++......-| .+||.+.
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal 141 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL 141 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence 00 0001123679999999999999 488899888877665444 6666543
No 328
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.1 Score=52.23 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=71.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+.++++.|||.|.+|.++|+.| ...|.+|.++|........... ..++..|..-.. -...+ ....+|+|
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~gv~~~~---~~~~~-~~~~~D~V 82 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALGATVRL---GPGPT-LPEDTDLV 82 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcCCEEEE---CCCcc-ccCCCCEE
Confidence 457899999999999999999987 5899999999976532211111 112223321110 01111 44579999
Q ss_pred EEcC---CCChhh-------hccccHHHH--hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 020301 241 SLHP---VLDKTT-------YHLINKERL--ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 241 ~l~~---plt~~t-------~~li~~~~~--~~mk~----ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
++.. |.++.- ..++++-.| ..+.+ ..+-|--+.|..--..-|...|+.
T Consensus 83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 8876 333321 113343332 33422 245566677888777778888865
No 329
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.78 E-value=0.26 Score=46.16 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++.|+++.|+|.|-.|++++-.|+ ..|+ +|.++||+..+. ++..+.+.. ..+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence 356899999999999999999874 6787 799999986432 222222110 0010000000111234567789999
Q ss_pred EEcCCCChhhh-c-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 241 SLHPVLDKTTY-H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 241 ~l~~plt~~t~-~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
+.+.|..-... . .++. ..++++.++.++-=.+ .++.-|.+|=+.|.
T Consensus 199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G~ 246 (283)
T PRK14027 199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALGC 246 (283)
T ss_pred EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCCC
Confidence 99999643211 1 1222 3355666777764433 44455555544443
No 330
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.78 E-value=0.071 Score=41.45 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=44.2
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l 242 (328)
.++.|+|.|+.|++++..+.+..|++ +.++|.++... |..-.+..-+.+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence 47999999999999885443444554 34556655421 1111122233478887777 999999
Q ss_pred cCCCChhhhccc
Q 020301 243 HPVLDKTTYHLI 254 (328)
Q Consensus 243 ~~plt~~t~~li 254 (328)
++|. +.....+
T Consensus 69 ~VP~-~~a~~~~ 79 (96)
T PF02629_consen 69 TVPA-EAAQEVA 79 (96)
T ss_dssp ES-H-HHHHHHH
T ss_pred EcCH-HHHHHHH
Confidence 9993 3444444
No 331
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.11 Score=52.50 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=68.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+.++++.|+|+|..|.++|+.| +..|.+|.++|..... ...+ ++..+. ...........+.+..+|+|+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~~-~~~~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAELP-DAEFVGGPFDPALLDGVDLVA 74 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhcC-CcEEEeCCCchhHhcCCCEEE
Confidence 5688999999999999999997 6899999999975432 1111 111110 001111111245567899998
Q ss_pred Ec--CCCC-----hh-------hhccccHHH-H-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 242 LH--PVLD-----KT-------TYHLINKER-L-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 242 l~--~plt-----~~-------t~~li~~~~-~-~~m--------k~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
.. +|.+ |+ ...++.+-. + ..+ ++..+-|--+-|..--..-|...|++..
T Consensus 75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 86 4433 21 112232221 1 112 2234555556788877777888887533
No 332
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.72 E-value=0.17 Score=50.08 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=58.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH----HhhcCC
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREAD 238 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aD 238 (328)
+..+++.|+|+|.+|+.+++.| ...|.+|+++|.+++.. +...+.+ .+. ........+.+. -+.++|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccCC
Confidence 4568899999999999999997 68899999999886532 2111110 011 010011122222 357899
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
.|+++.+... .+++-....+.+.+..+++-+
T Consensus 300 ~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 300 AFIALTNDDE--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence 9998888543 333333344555555555533
No 333
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.72 E-value=0.079 Score=49.80 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=71.2
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhcCCCCCccccccCC---------
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVTWKRASS--------- 229 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------- 229 (328)
-...+.++-++|+|.+|-..+-. +...|+-|..+|-.+....+. ....|...- +....-++.+..+
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~--~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGAKFLAVE--DEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhccccccccc--ccccCCCccccCCHHHHHHHHH
Confidence 45777889999999999999887 477899999988765432111 111111100 0111111111112
Q ss_pred -HHHHhhcCCEEEEc--CCCChhhhccccHHHHhcCCCCcEEEEcC--CCc
Q 020301 230 -MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGP 275 (328)
Q Consensus 230 -l~ell~~aDiV~l~--~plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~ 275 (328)
+.+.+++.|||+.. +|.-| .-.++.++..+.||||+++|+.+ +|+
T Consensus 237 ~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 45678899999543 55433 45679999999999999999985 554
No 334
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.71 E-value=0.16 Score=51.89 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=64.6
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV 240 (328)
++.+|++.|+|.|-+|++++..| ...|++|++++|+.+. .+...+.+ +.. .....++.+.. ..+|+|
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~-a~~la~~l-------~~~---~~~~~~~~~~~~~~~dii 443 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER-AKELADAV-------GGQ---ALTLADLENFHPEEGMIL 443 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHh-------CCc---eeeHhHhhhhccccCeEE
Confidence 57899999999999999999997 5789999999997543 22222211 000 01112222222 357888
Q ss_pred EEcCCCChh--hh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 241 SLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 241 ~l~~plt~~--t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
+.+.|..-. +. ..++. ..++++.+++++.=.+ .++.-|.+|=+.|
T Consensus 444 INtT~vGm~~~~~~~pl~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 491 (529)
T PLN02520 444 ANTTSVGMQPNVDETPISK---HALKHYSLVFDAVYTP-KITRLLREAEESG 491 (529)
T ss_pred EecccCCCCCCCCCCcccH---hhCCCCCEEEEeccCC-CcCHHHHHHHHCC
Confidence 888874421 11 11222 3455667777774433 2344444444444
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.66 E-value=0.084 Score=54.11 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=58.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS 241 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~ 241 (328)
.++-|+|+|++|+.+|+.| +..|.++++.|.+++.. ++ +++.+.... .....+.+-+ ++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~--------~~~~g~~~i-~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DE--------LRERGIRAV-LGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHCCCeEE-EcCCCCHHHHHhcCccccCEEE
Confidence 4689999999999999997 68899999999886532 21 112222111 1112232222 56899999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301 242 LHPVLDKTTYHLINKERLATMKKEAILVN 270 (328)
Q Consensus 242 l~~plt~~t~~li~~~~~~~mk~ga~lIN 270 (328)
++.+...++..++-. ..++.+...+|-
T Consensus 487 v~~~~~~~~~~iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGEIVAS--AREKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence 999876666555433 233445655553
No 336
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.29 Score=48.43 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=69.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-CCEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV~ 241 (328)
+.||++.|+|.|.+|+++|+.| ...|++|.++|+......+. .+ .++..|... .......+++.. .|+|+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~~~---~~~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGIKV---ICGSHPLELLDEDFDLMV 73 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCCEE---EeCCCCHHHhcCcCCEEE
Confidence 6789999999999999999997 58899999999764321110 00 011222211 111122344554 89887
Q ss_pred EcC--CCC-hh-------hhccccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LHP--VLD-KT-------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~~--plt-~~-------t~~li~~~~~-~~m-k~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
..- |.+ |. ...++.+..| ..+ +...+-|--+.|..--..-|...|+.
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 755 222 21 1123443333 233 33456666678988888888888875
No 337
>PRK08328 hypothetical protein; Provisional
Probab=94.60 E-value=0.098 Score=47.49 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=62.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHH-------hhhhh---------hhhcC-CCCCc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFV-------TAYGQ---------FLKAN-GEQPV 222 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~-------~~~~~---------~~~~~-~~~~~ 222 (328)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. .... +..+. .++.- .....
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v 100 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKI 100 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhCCCCEE
Confidence 5699999999999999999999985 6676 687888653210 0000 00000 00000 00000
Q ss_pred c----ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 223 T----WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 223 ~----~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
. .....+++++++++|+|+.|+- +.+++.++++...+. +.-+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~~~---~ip~i~g~ 150 (231)
T PRK08328 101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAHKK---GIPLVHGA 150 (231)
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEe
Confidence 0 0012346678999999998886 477888887655443 44456543
No 338
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.51 E-value=0.15 Score=49.70 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=62.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhcCCCCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP 221 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 221 (328)
..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|...-. +.+.....+.+....-....
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 5699999999999999999999984 6786 78888876211 00000000000000000000
Q ss_pred cc-ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 222 VT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 222 ~~-~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
.. .....+++++++++|+|+.|+- +.+++.++|+...+.-+
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~~i 157 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEITGT 157 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 00 0011346688999999977765 68899999887666544
No 339
>PLN02602 lactate dehydrogenase
Probab=94.50 E-value=0.19 Score=48.65 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=58.7
Q ss_pred CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~ 243 (328)
++|+|||.|.+|..+|-.++ +++.-++..+|...........|-.. .. .... .......+.++ ++.||+|+++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~-~~---~~~~~~~i~~~~dy~~-~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH-AA---AFLPRTKILASTDYAV-TAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHh-hh---hcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence 69999999999999998764 24445899999876432211111100 00 0000 11111134444 8999999998
Q ss_pred CCCC--h-hhh-ccc--c-------HHHHhcCCCCcEEEEcC
Q 020301 244 PVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCS 272 (328)
Q Consensus 244 ~plt--~-~t~-~li--~-------~~~~~~mk~ga~lIN~a 272 (328)
.-.. + +|| .++ | ...+....|.+++|+++
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5432 1 233 222 1 12334456889999997
No 340
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.49 E-value=0.06 Score=45.73 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=28.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCchhH
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATR 202 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d-~~~~~~ 202 (328)
+|||-|||+||+.+++.+...-.++|.+.+ +.+..+
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~ 38 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPE 38 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHH
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccch
Confidence 699999999999999997656788988774 442443
No 341
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.45 E-value=0.051 Score=52.23 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=30.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
||||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~ 34 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS 34 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence 599999999999999995 7899999999987643
No 342
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.44 E-value=0.12 Score=49.93 Aligned_cols=98 Identities=27% Similarity=0.196 Sum_probs=61.2
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhcCC-CC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANG-EQ 220 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~-~~ 220 (328)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-. +.+...+ .+++-. ..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~----~l~~~np~v 98 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESARE----AMLALNPDV 98 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHH----HHHHHCCCc
Confidence 4699999999999999999999985 6676 68888875311 0000000 011000 00
Q ss_pred Cccc--cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301 221 PVTW--KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (328)
Q Consensus 221 ~~~~--~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ 264 (328)
.... .. ..+..++++.+|+|+.|.- +.+++.++|....+.-+|
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGIP 145 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 0000 01 1234678999999988875 678888888877665444
No 343
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.21 Score=47.95 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=93.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (328)
..+|+||++.||+.++-.+ ..-|+.|.+|+|+.++.. ++.++ +..+.. .....|++++ +++-..|.+
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan-----eak~~~---i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN-----EAKGTK---IIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH-----hhcCCc---ccCCCCHHHHHHhcCCCcEEEE
Confidence 3589999999999999986 578999999999986532 22221 122222 2234677877 445566766
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (328)
.+-...-... +-++....|.+|-++|+-+-..--|+.--.+.|.+..|...+.-|.-.|.
T Consensus 77 lvkAG~pVD~-~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE 136 (487)
T KOG2653|consen 77 LVKAGAPVDQ-FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE 136 (487)
T ss_pred EeeCCCcHHH-HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence 6654443333 44777788999999999999998999999999999888889999988875
No 344
>PRK06153 hypothetical protein; Provisional
Probab=94.41 E-value=0.15 Score=49.64 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------hHH-H--HHHhhhhhhhhcCC--CCC
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANG--EQP 221 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~--~~~ 221 (328)
.|.+++|+|||+|-+|..++..|+ ..|. ++..+|...- ... + ...+...+...... ..+
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 689999999999999999999985 5565 7888886521 000 0 00111111111111 101
Q ss_pred cc-ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 222 VT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 222 ~~-~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
.. .....++ +.+..+|+|+.|+- +.+++.++++...+. +.-+|+++=|-
T Consensus 252 ~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l 301 (393)
T PRK06153 252 HPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL 301 (393)
T ss_pred EeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence 00 0011122 35788999999987 566788888777654 44577776553
No 345
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.40 E-value=0.22 Score=48.51 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=60.0
Q ss_pred cCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 020301 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (328)
Q Consensus 163 l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (328)
|.|||+||+|+- .-...++++| +..|++|.+|||-....... .. + ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~~-~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------NF-P-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------cC-C-CceEeCCHHH
Confidence 899999999984 4456788987 68999999999965432110 00 0 1234579999
Q ss_pred HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (328)
Q Consensus 233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN 270 (328)
.++.||+++++.- -++.+. ++-+.+ .|| +.++++
T Consensus 373 ~~~~aDaivi~te-w~ef~~-~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTE-WDEFRD-LDFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEecc-HHHHhc-cChhhh-hcc-CCEEEe
Confidence 9999999998854 234444 333344 666 445554
No 346
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.33 E-value=0.082 Score=52.59 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=77.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..|++|.|+|+|.-|.++|+.| ...|++|+++|..+.+....... ....+.. .... ....+.+..+|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~~~~~i~-~~~g--~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----LLLEGIE-VELG--SHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----hhccCce-eecC--ccchhccccCCEEEE
Confidence 4499999999999999999997 68999999999766541110000 0001111 1110 112267889999987
Q ss_pred cCCCChhhh----------cccc-HHHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHc--------CCccEEEEeCCCC
Q 020301 243 HPVLDKTTY----------HLIN-KERLATM-KKE-AILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED 301 (328)
Q Consensus 243 ~~plt~~t~----------~li~-~~~~~~m-k~g-a~lIN~aRG~~vde~aL~~aL~~--------g~i~gaalDV~~~ 301 (328)
.---.+.+. .++. -+.|-+. ++. .+-|--+-|..=-+.-+...|++ |.|...++|+.++
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 632222211 1222 2233332 122 44444456776666666665554 5567788899987
Q ss_pred CCCC
Q 020301 302 EPYM 305 (328)
Q Consensus 302 EP~~ 305 (328)
++.+
T Consensus 156 ~~~~ 159 (448)
T COG0771 156 AEPA 159 (448)
T ss_pred cCCC
Confidence 5543
No 347
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.31 E-value=0.15 Score=50.95 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=71.3
Q ss_pred cCCCEEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
..++++.|+|+|..|.+ +|+.| +..|.+|.++|....+..++ +++.|.... ...+ .+.+..+|+|+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi~~~---~~~~-~~~~~~~d~vv 71 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGAIIF---IGHD-AENIKDADVVV 71 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCCEEe---CCCC-HHHCCCCCEEE
Confidence 56789999999999999 79987 68999999999865432221 111122111 1112 34567899987
Q ss_pred EcC--CCC-hhhh-------ccccHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301 242 LHP--VLD-KTTY-------HLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (328)
Q Consensus 242 l~~--plt-~~t~-------~li~~~~~-~~-mk-~ga~lIN~aRG~~vde~aL~~aL~~g~ 290 (328)
..- |.+ |.-+ .++++-.| .+ ++ ...+-|--+.|..--..-+...|+...
T Consensus 72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 653 322 2211 34554443 33 33 235666667899888888888887543
No 348
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.30 E-value=0.14 Score=53.04 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (328)
..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +. +++.|.. .-....++.+-+ +++||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~~-v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGYK-VYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCCe-EEEeeCCCHHHHHhcCCccCCEE
Confidence 35799999999999999997 68899999999886532 21 1222321 111122333322 6789999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+++.+..+++..++ ...+++.|...+|-.+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99999655554433 33455666666665544
No 349
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.23 Score=44.59 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.7
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
+.|+++.|.|. |.||+.+++.|+ .-|.+|++.+|+..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~ 41 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA 41 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence 67899999996 899999999974 67999998887653
No 350
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.19 E-value=0.25 Score=46.87 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=65.2
Q ss_pred CEEEEEec-CHHHHHHHHHHHhcCCc--EEEEEcCCch-hHHHH-HHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~fg~--~V~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
++|+|+|. |.+|..+|..++ ..|. +|+.+|+... +..+. ..+.+.. +...+.. .......+.+ .++.||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~-~~~~~~~-~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDA-LAAAGID-AEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhc-hhccCCC-cEEEECCCHH-HhCCCCEE
Confidence 47999998 999999999874 4443 6999998531 11111 1111100 0000100 1111123444 48999999
Q ss_pred EEcCCCCh---hhh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCccEEE
Q 020301 241 SLHPVLDK---TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG 295 (328)
Q Consensus 241 ~l~~plt~---~t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a----L~~g~i~gaa 295 (328)
+++..... +++ .++. ...+....+++++|+++ ..+|.-..+-. +...++.|.+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 99986321 121 1111 11234445678888886 56665543322 3345566664
No 351
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.17 E-value=0.3 Score=46.08 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred EEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 168 vgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
++|||.|.+|..+|-.++ ..| -++..+|+..........+ ....... ..........+ .+.++.||+|+++..
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-L~~~~~~--~~~~~i~~~~~-~~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-LSHASAF--LATGTIVRGGD-YADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-HHHhccc--cCCCeEEECCC-HHHhCCCCEEEEcCC
Confidence 589999999999999864 555 5899999976432111111 1000000 00011111234 457899999999986
Q ss_pred CChhhhc------------ccc--HHHHhcCCCCcEEEEcC
Q 020301 246 LDKTTYH------------LIN--KERLATMKKEAILVNCS 272 (328)
Q Consensus 246 lt~~t~~------------li~--~~~~~~mk~ga~lIN~a 272 (328)
. +...+ ++. ...+....|++++||++
T Consensus 76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 3 22111 111 12333445899999997
No 352
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.15 E-value=0.15 Score=46.59 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=60.5
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------HH-----HhhhhhhhhcCC-CCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------KF-----VTAYGQFLKANG-EQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-------~~-----~~~~~~~~~~~~-~~~~~~ 224 (328)
..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-.. +. .. .+.-.+.+++-. ......
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4589999999999999999999985 5665 677777653211 00 00 000000000000 000000
Q ss_pred --cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 225 --KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 225 --~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
.. ..+++++++++|+|+.+.- +.+++.++|+...+.-+
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKV 140 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCC
Confidence 01 1236678999999998874 68889889887766533
No 353
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.19 Score=50.56 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=70.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
..+.++++.|+|+|.+|+++|+.| ...|++|.++|+..... .+..+ ..|.. ........+.+..+|+|
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~-------~~gi~---~~~~~~~~~~~~~~d~v 78 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIE-------VTGVA---DISTAEASDQLDSFSLV 78 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHH-------hcCcE---EEeCCCchhHhcCCCEE
Confidence 357889999999999999999997 68899999999764332 11111 11211 11111223445778988
Q ss_pred EEc--CC-CChhh-------hccccHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 241 SLH--PV-LDKTT-------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 241 ~l~--~p-lt~~t-------~~li~~~~~~~-------m-k~-ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
+.. +| .+|+. ..++++-.+.. + ++ ..+-|--+-|..--..-|...|+..
T Consensus 79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 765 33 22321 12334333321 1 12 3455555678888888888888763
No 354
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.10 E-value=0.09 Score=51.78 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=28.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT 201 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~ 201 (328)
.++||.|||+||+.++|.+...++++|++ +|+....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 48999999999999999853248999888 6655443
No 355
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.10 E-value=0.14 Score=51.44 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=69.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+.|++++|+|+|.-|+++|+.| ...|++|+++|.......+.. . .++..+.. .....+ .+.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~-~----~l~~~~~~---~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREV-G----ALADAALL---VETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHH-H----HHhhcCEE---EeCCCC-hHHccCCCEEEE
Confidence 4689999999999999999997 689999999996543221110 0 01111110 001112 355678999976
Q ss_pred cC--CCC-hhh-------hccccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 243 HP--VLD-KTT-------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 243 ~~--plt-~~t-------~~li~~~~~--~~-mk-----~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.- |.+ |.- ..++++-.| .. ++ +..+-|--+-|..--..-|...|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 53 322 211 124554443 33 32 2356666677888877778877875
No 356
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.09 E-value=0.13 Score=48.81 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.6
Q ss_pred EEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhH
Q 020301 167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATR 202 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~ 202 (328)
+|||=|||+||+.+++.+...- .|+|++.+...++.
T Consensus 3 kV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~ 39 (335)
T COG0057 3 KVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPD 39 (335)
T ss_pred EEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHH
Confidence 7999999999999999975444 49999987643333
No 357
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.08 E-value=0.21 Score=47.77 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=24.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcC----CcEEEEEcCCc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQ 199 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~f----g~~V~~~d~~~ 199 (328)
+|||+|+|+||+.+.+.+. .. +++|...+...
T Consensus 1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~ 36 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELA 36 (325)
T ss_pred CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCC
Confidence 4899999999999999864 33 37877765433
No 358
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.03 E-value=0.35 Score=46.53 Aligned_cols=103 Identities=12% Similarity=0.222 Sum_probs=64.2
Q ss_pred ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+.|+||+++|= +++..+.+..++.-+|++|.+..|..-...++..+ .++..| .......++++.++.||
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVIS----DIENAG---HKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHHccCC
Confidence 588999999998 57888888765434599999988753211111111 111212 12233479999999999
Q ss_pred EEEEcCCCCh------h-----hhccccHHHH-hcCCCCcEEEEc
Q 020301 239 VISLHPVLDK------T-----TYHLINKERL-ATMKKEAILVNC 271 (328)
Q Consensus 239 iV~l~~plt~------~-----t~~li~~~~~-~~mk~ga~lIN~ 271 (328)
+|..-.-..+ + -.-.++++.+ +.+|+++++.-+
T Consensus 229 vvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc 273 (338)
T PRK08192 229 ILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP 273 (338)
T ss_pred EEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence 9987321111 1 0134567777 458888888765
No 359
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.01 E-value=0.25 Score=46.77 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=45.7
Q ss_pred CEEEEEecCHHHH-HHHHHHHhcCC--cE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCE
Q 020301 166 QTVGVIGAGRIGS-AYARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (328)
Q Consensus 166 ~tvgIiG~G~IG~-~vA~~l~~~fg--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 239 (328)
.++||||+|.+++ ..+..+ +..+ +. |.++|++... .+++.+.| +.. ..+.+++++++. -|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence 4799999997775 466665 4554 34 5566887654 33333333 211 245799999997 489
Q ss_pred EEEcCCCC
Q 020301 240 ISLHPVLD 247 (328)
Q Consensus 240 V~l~~plt 247 (328)
|+++.|..
T Consensus 71 V~Iatp~~ 78 (342)
T COG0673 71 VYIATPNA 78 (342)
T ss_pred EEEcCCCh
Confidence 99999943
No 360
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.27 Score=43.83 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=30.8
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.+.++++.|.|. |.||+.+|+.|+ ..|.+|+...++..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~~ 40 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGSA 40 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCCH
Confidence 367899999995 999999999984 67999887765543
No 361
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.89 E-value=0.3 Score=46.46 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=63.2
Q ss_pred cCCCEEEEEec---CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 163 l~g~tvgIiG~---G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
+.|.+|+++|= +++..+++..+ ..||+ +|.+..|..-. +. ...........++++.++.||
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence 67999999998 59999999986 68999 99998875311 00 000012333578999999999
Q ss_pred EEEEcCCCC-----hh----h--hccccHHHHhcCCCCcEEEEc
Q 020301 239 VISLHPVLD-----KT----T--YHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 239 iV~l~~plt-----~~----t--~~li~~~~~~~mk~ga~lIN~ 271 (328)
+|...-=.. +. . .-.++++.++.+|+++++.=+
T Consensus 220 vvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc 263 (310)
T PRK13814 220 VIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP 263 (310)
T ss_pred EEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECC
Confidence 996521111 01 1 134677777778888777766
No 362
>PRK05086 malate dehydrogenase; Provisional
Probab=93.82 E-value=0.32 Score=46.20 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=61.0
Q ss_pred CEEEEEec-CHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc--ccCCHHHHhhcCCEE
Q 020301 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVI 240 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV 240 (328)
++++|||. |.||+.+|..++. .++..+..+|+.+..... ..+ + .+... ..... ...++.+.++.||+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~-alD-l----~~~~~-~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGV-AVD-L----SHIPT-AVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcce-ehh-h----hcCCC-CceEEEeCCCCHHHHcCCCCEE
Confidence 47999999 9999999977533 455688999986432100 001 0 01010 01111 124667888999999
Q ss_pred EEcCCCChh---hh-cc------ccHHHHhcC---CCCcEEEEcCCCcccCHHH
Q 020301 241 SLHPVLDKT---TY-HL------INKERLATM---KKEAILVNCSRGPVIDEVA 281 (328)
Q Consensus 241 ~l~~plt~~---t~-~l------i~~~~~~~m---k~ga~lIN~aRG~~vde~a 281 (328)
+++.-.... ++ .+ +-++..+.| .+.+++++++- .+|.-+
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN--P~D~~t 125 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN--PVNTTV 125 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chHHHH
Confidence 998764221 11 11 223333334 57889999954 455433
No 363
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.81 E-value=0.19 Score=47.67 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=43.8
Q ss_pred EEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC-CC-cc-ccccCCHHHHhhcCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QP-VT-WKRASSMDEVLREADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~l~ell~~aDiV~l 242 (328)
+|+|||.|.+|..+|..|+ +++.-++..+|........+..| + .+... .. .. ..+..+ .+.++.||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-L----~~~~~~~~~~~~~i~~~~-y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-F----HHATALTYSTNTKIRAGD-YDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-H----HhhhccCCCCCEEEEECC-HHHhCCCCEEEE
Confidence 5899999999999998764 24444799999875432211111 1 11011 00 01 111223 467899999998
Q ss_pred cCCC
Q 020301 243 HPVL 246 (328)
Q Consensus 243 ~~pl 246 (328)
+.-.
T Consensus 75 taG~ 78 (307)
T cd05290 75 TAGP 78 (307)
T ss_pred CCCC
Confidence 7653
No 364
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.80 E-value=0.62 Score=43.72 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=70.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
|++++|||--.=-..+++.| ...|++|..|.-.... .+.. +.......++.++++|+|++-+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLE---------------DGFT--GAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEeccccc---------------cccc--cceeecchhhhhccCCEEEECC
Confidence 68999999988888899997 5789988777532110 0001 2223345566699999999999
Q ss_pred CCChhhh----------ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301 245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (328)
Q Consensus 245 plt~~t~----------~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 292 (328)
|.+.+.. --++++.+++|+++++ +-++ ++..+|-++.++..|.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 9776632 1257899999997654 4444 3445666566655554
No 365
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.73 E-value=0.51 Score=43.51 Aligned_cols=130 Identities=22% Similarity=0.208 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 020301 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (328)
Q Consensus 123 vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~f----g~-------~ 191 (328)
+|--+++-+++.+|-. |..|...++.|+|.|.-|-.+|+.+. .. |. +
T Consensus 4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~ 61 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR 61 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence 4555677777666532 45689999999999999999999874 44 66 5
Q ss_pred EEEEcCCc-----hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC--CEEEEcCCCChhhhccccHHHHhcCCC
Q 020301 192 LIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK 264 (328)
Q Consensus 192 V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~plt~~t~~li~~~~~~~mk~ 264 (328)
++.+|+.- .+....+...|. +.... . ....+|.|+++.+ |+++=+- ...++|+++.++.|.+
T Consensus 62 i~lvD~~Gll~~~r~~l~~~~~~~a---~~~~~-~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 62 IWLVDSKGLLTDDREDLNPHKKPFA---RKTNP-E---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK 130 (255)
T ss_dssp EEEEETTEEEBTTTSSHSHHHHHHH---BSSST-T---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred EEEEeccceEeccCccCChhhhhhh---ccCcc-c---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence 88888751 111222222231 11111 1 1125999999999 9997552 2578999999999987
Q ss_pred ---CcEEEEcCCCcc---cCHHHHHHH
Q 020301 265 ---EAILVNCSRGPV---IDEVALVEH 285 (328)
Q Consensus 265 ---ga~lIN~aRG~~---vde~aL~~a 285 (328)
..++.=.|.-.- +..++.+++
T Consensus 131 ~~erPIIF~LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 131 HNERPIIFPLSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp HSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred cCCCCEEEECCCCCCcccCCHHHHHhh
Confidence 899999988766 344444444
No 366
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.73 E-value=0.28 Score=46.86 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc-hhHHHHHHhhhhhhhhcCCCCCccccccCCHHH--HhhcCCEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI 240 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aDiV 240 (328)
.|.++.|+|.|.+|...++.+ +..|++|++.+++. .+...+....+ |...... ...++.+ .....|+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~~~~~~-------Ga~~v~~-~~~~~~~~~~~~~~d~v 242 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKADIVEEL-------GATYVNS-SKTPVAEVKLVGEFDLI 242 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHc-------CCEEecC-CccchhhhhhcCCCCEE
Confidence 588999999999999999984 89999999998742 11111122222 2211100 1112211 23458999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+-++.. +. .-.+.++.|+++..++.++.
T Consensus 243 id~~g~-~~----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 243 IEATGV-PP----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EECcCC-HH----HHHHHHHHccCCcEEEEEec
Confidence 988762 11 22567788999998888764
No 367
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.63 E-value=0.16 Score=48.17 Aligned_cols=108 Identities=23% Similarity=0.373 Sum_probs=59.8
Q ss_pred CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--c-ccc-CCHHHHhhcCCEE
Q 020301 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--W-KRA-SSMDEVLREADVI 240 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~l~ell~~aDiV 240 (328)
++|+|||.|.||+.+|-+|. +.++-++..||..... .+...... .+...... . ... .+ .+.++.||+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~-~~G~a~DL-----~~~~~~~~~~~~i~~~~~-y~~~~~aDiV 73 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEK-AEGVALDL-----SHAAAPLGSDVKITGDGD-YEDLKGADIV 73 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccccc-ccchhcch-----hhcchhccCceEEecCCC-hhhhcCCCEE
Confidence 47999999999999998864 3566689999998332 11111000 01111110 0 111 12 4568999999
Q ss_pred EEcC--CCChh-hhc-cc--cHH-------HHhcCCCCcEEEEcCCCcccCHHHH
Q 020301 241 SLHP--VLDKT-TYH-LI--NKE-------RLATMKKEAILVNCSRGPVIDEVAL 282 (328)
Q Consensus 241 ~l~~--plt~~-t~~-li--~~~-------~~~~mk~ga~lIN~aRG~~vde~aL 282 (328)
+++. |..|. ||. ++ |.. .+..-.++++++.++ ..||.-+.
T Consensus 74 vitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt--NPvD~~ty 126 (313)
T COG0039 74 VITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT--NPVDILTY 126 (313)
T ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec--CcHHHHHH
Confidence 9988 65554 432 22 111 222233567777663 34544433
No 368
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.61 E-value=0.37 Score=46.10 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=63.4
Q ss_pred EEEEEecCHHHHHHHHHHHh-------cCCcEEEEE-cCCchhHHHHH--HhhhhhhhhcCCC-CCccccccCCHHHHh-
Q 020301 167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYY-DLYQATRLEKF--VTAYGQFLKANGE-QPVTWKRASSMDEVL- 234 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~-------~fg~~V~~~-d~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~ell- 234 (328)
+|+|+|||++|+.+++.|.+ +++.+|.+. |++..-..+.- .+..-++... +. ..... ...++++++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~-~~~~~~~ll~ 79 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDY-EKIKFDEIFE 79 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCC-CcCCHHHHhc
Confidence 79999999999999998743 267786644 54321000000 0000000111 10 00000 112566664
Q ss_pred hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 020301 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP 290 (328)
Q Consensus 235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~ 290 (328)
..+|+|+=|.|...+-..- -.-..+.++.|.-+|-..-|.+. .-+.|.++.+++.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred CCCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 4679999888743211111 12234456678788877777765 4566666666543
No 369
>PRK04148 hypothetical protein; Provisional
Probab=93.61 E-value=0.24 Score=41.20 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.++++..||+| -|..+|+.| +..|.+|++.|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence 46789999999 899999997 5789999999998764
No 370
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.59 E-value=0.26 Score=46.84 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=59.8
Q ss_pred EEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhcCCEEE
Q 020301 167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~ 241 (328)
+|+|||. |.+|..+|-.|+. .+.-++..+|... ..- ...| + .+......... ..++.+.++.||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g-~a~D-----L-~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAG-VAAD-----L-SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcE-EEch-----h-hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 9999999987642 4445899999875 210 0011 0 11111111111 123567899999999
Q ss_pred EcCCCC--h-hhhc-cc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020301 242 LHPVLD--K-TTYH-LI--N-------KERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 242 l~~plt--~-~t~~-li--~-------~~~~~~mk~ga~lIN~aRG~~vde 279 (328)
++.-.. + +++- ++ | .+.+.+-.|++++|+++ ..+|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence 886532 1 1221 11 1 12334446899999995 45664
No 371
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.59 E-value=0.36 Score=46.55 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=46.7
Q ss_pred CEEEEEecCHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.+|||||. .+|+.-++.+.+.- ++++.+ +|+..+. .+++.+.| +. ..+.++++++...|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------gi-----~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------GV-----PLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------CC-----CccCCHHHHhcCCCEEEEE
Confidence 57999999 68999988864322 577664 6776543 33333333 21 2358999999999999999
Q ss_pred CCC
Q 020301 244 PVL 246 (328)
Q Consensus 244 ~pl 246 (328)
+|.
T Consensus 70 ipt 72 (343)
T TIGR01761 70 VRS 72 (343)
T ss_pred eCC
Confidence 984
No 372
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.49 E-value=0.29 Score=45.00 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.7
Q ss_pred cCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCC
Q 020301 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (328)
Q Consensus 163 l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~ 198 (328)
+.||++.|.|.+ .||+++|+.|+ .-|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 679999999997 59999999985 679999988876
No 373
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.49 E-value=0.35 Score=45.67 Aligned_cols=95 Identities=20% Similarity=0.163 Sum_probs=57.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhh--cC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLR--EA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~--~a 237 (328)
.|.++.|+|.|.+|...++.+ +.+|++ |++.+++.... +....+ |....-.....+ +.++.. ..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~--~~~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERL--ELAKAL-------GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 388999999999999999985 899999 99988765432 111222 211110000011 222322 47
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+|+-+... +. .....++.++++..++..+.
T Consensus 233 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSGN-TA----ARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcC
Confidence 888877652 11 12345677778877777654
No 374
>PRK08223 hypothetical protein; Validated
Probab=93.48 E-value=0.33 Score=45.61 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=59.2
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HH-----HHhhhhhhhhcCC-CCCcc-
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EK-----FVTAYGQFLKANG-EQPVT- 223 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~-----~~~~~~~~~~~~~-~~~~~- 223 (328)
..|..++|.|||+|-+|..+|+.|+ ..|. ++..+|...-+. + +. ..+.-.+.+++-. ...+.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 4699999999999999999999985 5665 677777642110 0 00 0000000011000 00000
Q ss_pred ---ccccCCHHHHhhcCCEEEEcCCCC-hhhhccccHHHHhcC
Q 020301 224 ---WKRASSMDEVLREADVISLHPVLD-KTTYHLINKERLATM 262 (328)
Q Consensus 224 ---~~~~~~l~ell~~aDiV~l~~plt-~~t~~li~~~~~~~m 262 (328)
.....+.+++++.+|+|+-++..- -+++.++|+...+.=
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG 144 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC
Confidence 012346778899999998776531 278888887766643
No 375
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.41 E-value=0.15 Score=44.75 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=45.6
Q ss_pred EEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301 167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~-l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 242 (328)
++.|||.|++|++++.. ..+..||++. ++|..++.- | .. ..+......++|++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V--------G---~~--~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV--------G---TK--IGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh--------C---cc--cCCeeeechHHHHHHHHhcCccEEEE
Confidence 58999999999999963 2346789865 677765421 0 01 12233344567888888 6788999
Q ss_pred cCCC
Q 020301 243 HPVL 246 (328)
Q Consensus 243 ~~pl 246 (328)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9994
No 376
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.31 Score=48.38 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+.++++.|+|.|.+|.++|+.| ...|.+|.++|.............+ ..|. ....-..-++.+..+|+|+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~l~~~-----~~gi---~~~~g~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQIGKM-----FDGL---VFYTGRLKDALDNGFDILAL 73 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHHHhhc-----cCCc---EEEeCCCCHHHHhCCCEEEE
Confidence 5689999999999999999997 6889999999976543111100000 0111 11011112345578999976
Q ss_pred cCCCCh---hhh-------ccccHH-HHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 243 HPVLDK---TTY-------HLINKE-RLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 243 ~~plt~---~t~-------~li~~~-~~~~-mk---~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.---.+ .-+ .++.+. .+.. ++ ...+-|--+-|..--..-+...|+.
T Consensus 74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 543222 221 133333 3223 32 2355566677888877788888875
No 377
>PRK10206 putative oxidoreductase; Provisional
Probab=93.37 E-value=0.26 Score=47.39 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred EEEEEecCHHHHH-HHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (328)
Q Consensus 167 tvgIiG~G~IG~~-vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 241 (328)
++||||+|.|++. .+..+... -++++. ++|++.... +..+.| +. ...+.+++++++ ..|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence 6999999998864 34433222 267876 578875321 222222 11 123578999996 579999
Q ss_pred EcCCCC
Q 020301 242 LHPVLD 247 (328)
Q Consensus 242 l~~plt 247 (328)
++.|..
T Consensus 70 I~tp~~ 75 (344)
T PRK10206 70 VCTHAD 75 (344)
T ss_pred EeCCch
Confidence 999944
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.36 E-value=0.28 Score=51.09 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (328)
..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +. +++.|.. ......++.+-+ +++||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~~-v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ET--------LRKFGMK-VFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhcCCe-EEEEeCCCHHHHHhcCCCcCCEE
Confidence 46799999999999999997 68899999999887532 11 1222321 111122333322 5689999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
+++.+..+.+..++ ...+++.|+..++--
T Consensus 469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 469 INAIDDPQTSLQLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEeCCHHHHHHHH--HHHHHhCCCCeEEEE
Confidence 99998555444432 334445566555443
No 379
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.36 E-value=0.26 Score=53.93 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=66.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH--h--------hh----hhhhh-cCCCCCccc---
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AY----GQFLK-ANGEQPVTW--- 224 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~--~--------~~----~~~~~-~~~~~~~~~--- 224 (328)
+.-.++.|+|.|++|+..++.+ +++|++ . .++..-..+.... . -| ..+-. ..+.....+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 4457899999999999999996 789888 2 3433221111000 0 00 00000 000000000
Q ss_pred -------cccCC-HHHHhhcCCEEEEcCCCChhhhccccHH-HHhcCCCCc----EEEEcC
Q 020301 225 -------KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 272 (328)
Q Consensus 225 -------~~~~~-l~ell~~aDiV~l~~plt~~t~~li~~~-~~~~mk~ga----~lIN~a 272 (328)
.+... +++.+..||+|+.|+-..+.+..++.++ ..+.||+|+ ++++++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00111 4578899999999998888889999988 778899998 899876
No 380
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.27 Score=45.85 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.1
Q ss_pred cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
..+.|+++-|.|. |.||..+|+.|+ .-|++|+.+++...
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 4688999999995 789999999985 67999999988753
No 381
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.31 E-value=0.33 Score=46.07 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=67.1
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
.++.|+|.|.||.-++-+|+ ..|..|+.+-|.+. .+++.. -+-.................-.+.+..+|+|++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKK-KGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHh-CCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 37999999999999999985 66778888777654 122111 011111111100001112233455678999999975
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 291 (328)
+.+|...+ +......++.+.++-+--| +=.++.+-+.+.+.++
T Consensus 77 -a~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~i 119 (307)
T COG1893 77 -AYQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETV 119 (307)
T ss_pred -cccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceE
Confidence 44555544 5555667777766644333 2233455555555533
No 382
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.26 E-value=0.65 Score=46.37 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=71.0
Q ss_pred cCCCEEEEEec----CHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301 163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (328)
Q Consensus 163 l~g~tvgIiG~----G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (328)
++-++|.|||. |++|..+.+.| +..|+ +|+.++|.... . .+...+.+++++-..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i--~G~~~~~sl~~lp~~ 64 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------I--LGVKAYPSVLEIPDP 64 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------c--CCccccCCHHHCCCC
Confidence 55678999999 88999999987 56565 78888876431 0 112335689998888
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCccEE
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRV 294 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~-ga~lIN~aRG~~-----vde~aL~~aL~~g~i~ga 294 (328)
.|++++++| .+.+..++ ++..+ .+- .++++.-+-++. -.++.|.++.+++.+.-.
T Consensus 65 ~Dlavi~vp-~~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 65 VDLAVIVVP-AKYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCEEEEecC-HHHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 899999999 23444544 33333 333 444443333332 236788888887766644
No 383
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.22 E-value=0.36 Score=42.73 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=31.3
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~ 198 (328)
..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 4689999999999999999999985 5676 48788765
No 384
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.27 Score=46.35 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=62.4
Q ss_pred cCCCEEEEEe---cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 163 l~g~tvgIiG---~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
+.|++|+|+| +|+..++.++.| +.||++|..+.|..-...+...+.. +..+ .........+|.+.++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~~~---~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EEKG---GVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hhcC---ceEEEecchhhhhccCCE
Confidence 8999999999 899999999997 7999999999986432222221111 1111 122234456669999999
Q ss_pred EEEcC--------CCChh---hhccccHHHHhc-CCCCcEEEEc
Q 020301 240 ISLHP--------VLDKT---TYHLINKERLAT-MKKEAILVNC 271 (328)
Q Consensus 240 V~l~~--------plt~~---t~~li~~~~~~~-mk~ga~lIN~ 271 (328)
+.+.= |.-++ -.+-+....+++ +|+++++.--
T Consensus 228 l~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP 271 (316)
T COG0540 228 LYMLRVQKERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHP 271 (316)
T ss_pred EEeehhhHhhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECC
Confidence 96531 11111 111223344555 7777777654
No 385
>PRK15076 alpha-galactosidase; Provisional
Probab=93.17 E-value=0.35 Score=48.05 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=70.7
Q ss_pred CEEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~--~l~--~~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+|+|||.|++|...+- .++ .++ +.+|..||....... ...... .....+ .........++.+.++.||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence 47999999999955443 221 344 459999999864321 111111 111111 1223333468889999999
Q ss_pred EEEEcCCCC--h--------------------hhh-------cccc-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020301 239 VISLHPVLD--K--------------------TTY-------HLIN-------KERLATMKKEAILVNCSRGPVIDEVAL 282 (328)
Q Consensus 239 iV~l~~plt--~--------------------~t~-------~li~-------~~~~~~mk~ga~lIN~aRG~~vde~aL 282 (328)
||+.++-.. + +|. .+-+ .+.++...|++++||.+-.-=+-..++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 998876542 1 110 0001 123334458999999988765555555
Q ss_pred HHHHHcCCccEEE
Q 020301 283 VEHLKQNPMFRVG 295 (328)
Q Consensus 283 ~~aL~~g~i~gaa 295 (328)
.+ +...++.|.+
T Consensus 158 ~~-~~~~rviG~c 169 (431)
T PRK15076 158 NR-YPGIKTVGLC 169 (431)
T ss_pred hc-CCCCCEEEEC
Confidence 52 2344555553
No 386
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=93.15 E-value=1.7 Score=42.78 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred ccCCCEEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (328)
Q Consensus 162 ~l~g~tvgIiG~-----G---~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (328)
.+.|++|+|+|- | ++.++++..+ ..||++|.+..|..-...++..+.--+.++..| .......++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 478999999985 5 5668888886 589999999988631111111110000011112 112234799999
Q ss_pred hhcCCEEEEcC----C--C--------Ch-----------------hhhccccHHHHhcCCCC-cEEEEc
Q 020301 234 LREADVISLHP----V--L--------DK-----------------TTYHLINKERLATMKKE-AILVNC 271 (328)
Q Consensus 234 l~~aDiV~l~~----p--l--------t~-----------------~t~~li~~~~~~~mk~g-a~lIN~ 271 (328)
+++||+|..-. . . .. -..--+|++.++.+|++ +++.-+
T Consensus 260 v~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHc 329 (395)
T PRK07200 260 FKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC 329 (395)
T ss_pred hCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECC
Confidence 99999997642 1 0 00 01123678888888885 888776
No 387
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.12 E-value=0.42 Score=46.06 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=56.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH-HH---hh-cC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EV---LR-EA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-el---l~-~a 237 (328)
.|.+|.|.|.|.+|...++. ++..|+ +|++.++++... +....+ |....-.....++. ++ .. ..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r~--~~a~~~-------Ga~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDKL--ALAREL-------GATATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHHH--HHHHHc-------CCceEeCCCchhHHHHHHHHhCCCC
Confidence 47899999999999999998 489999 699888776432 111222 22111000111221 22 11 37
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+|+-++.. +++ -...++.++++..++.++-
T Consensus 261 d~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 261 DYAFEMAGS-VPA----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CEEEECCCC-hHH----HHHHHHHHhcCCEEEEEcc
Confidence 898877652 221 2345667788888887653
No 388
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.11 E-value=0.59 Score=46.39 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=61.7
Q ss_pred ccccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC
Q 020301 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (328)
Q Consensus 160 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
+..+.|++|+|+|+ .+-+..+++.| ..-|.+|.+|||........ ..+ + ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence 34689999999999 46678899997 57899999999984321100 000 0 011
Q ss_pred HHH-HhhcCCEEEEcCCCChhhhccccHHHHh-cCCCCcEEEEcCCCcc
Q 020301 230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (328)
Q Consensus 230 l~e-ll~~aDiV~l~~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~ 276 (328)
+++ .++.||.|+++.. -++.+. ++-+.+. .||...++|+. |+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 222 3678999999977 344444 4544444 45545688884 6544
No 389
>PRK07411 hypothetical protein; Validated
Probab=93.04 E-value=0.29 Score=47.98 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=62.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHHH-----hhhhhhhhcCC-CCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKFV-----TAYGQFLKANG-EQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~~~-----~~~~~~~~~~~-~~~~~~ 224 (328)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. + +..+ +...+.+++-. ......
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 4699999999999999999999985 6665 677888653210 0 0000 00000011000 000000
Q ss_pred --c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301 225 --K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (328)
Q Consensus 225 --~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ 264 (328)
. ...+..++++++|+|+.|.- +.+++.++|+...+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 0 11234678999999888765 678899999888776665
No 390
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.99 E-value=0.61 Score=46.27 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=59.7
Q ss_pred CEEEEEecCHHHHHHHHHHHh---------cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301 166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~---------~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (328)
-+|||+|+|.||+.+++.+.+ +.+.+|. ++|++.... . +..........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~-------------~~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-R-------------GVDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-c-------------CCCCcccceeCCHHHHhh
Confidence 379999999999999887532 1245654 457654321 0 000011122468999996
Q ss_pred --cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020301 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM 291 (328)
Q Consensus 236 --~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i 291 (328)
+.|+|+.+++...-.+ +-..+.++.|.-+|-..-+.+. .-+.|.++.++...
T Consensus 70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 4699999887432111 1222445556555543222222 23566666666544
No 391
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.98 E-value=0.15 Score=40.76 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=51.2
Q ss_pred ecCHHHHHHHHHHHhc---CCcEEEE-EcCC--chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEEc
Q 020301 172 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (328)
Q Consensus 172 G~G~IG~~vA~~l~~~---fg~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~ 243 (328)
|+|.||+.+++.+.+. ++++|.+ ++++ ......... .......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999997432 2777664 4665 111111000 01123468999999 99999988
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v 277 (328)
.+. +.. .+-....++.|.-+|-.+-|.+.
T Consensus 67 t~~-~~~----~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSS-EAV----AEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSC-HHH----HHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCc-hHH----HHHHHHHHHCCCeEEEECHHHhh
Confidence 553 222 23344556788889988888888
No 392
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.96 E-value=0.15 Score=43.56 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=47.9
Q ss_pred EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEEcC
Q 020301 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 168 vgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~ 244 (328)
|.|+|. |.+|+.+++.| ..-|.+|++..|++.+..+ ..+.... .+....++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 578995 99999999997 5788999999998764321 0111111 1111234577889999999999
Q ss_pred CCChh
Q 020301 245 VLDKT 249 (328)
Q Consensus 245 plt~~ 249 (328)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 85444
No 393
>PLN00106 malate dehydrogenase
Probab=92.89 E-value=0.32 Score=46.52 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCEEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-Cccc-cccCCHHHHhhcCCE
Q 020301 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV 239 (328)
Q Consensus 164 ~g~tvgIiG~-G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi 239 (328)
..++|+|+|. |++|..+|..|+. .+.-++..+|+.. ...+ ..+ +.+.... .... ...+++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~-a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGV-AAD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCee-Ech-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 4469999999 9999999998642 3444899999876 2110 001 0000000 1111 123456788999999
Q ss_pred EEEcCCC--Ch-hhhc-cc--c----HH---HHhcCCCCcEEEEcCCC
Q 020301 240 ISLHPVL--DK-TTYH-LI--N----KE---RLATMKKEAILVNCSRG 274 (328)
Q Consensus 240 V~l~~pl--t~-~t~~-li--~----~~---~~~~mk~ga~lIN~aRG 274 (328)
|+++.-. .| +++. ++ | .+ .+....|++++++++--
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP 137 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP 137 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 9887543 21 1221 11 1 22 23334589999999654
No 394
>PRK06128 oxidoreductase; Provisional
Probab=92.77 E-value=0.4 Score=44.76 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.3
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~ 198 (328)
.+.||++.|.|. |.||+.+|+.|+ .-|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 478999999996 889999999985 679999876554
No 395
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.68 E-value=0.55 Score=45.20 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.|++|.|.|.|.+|...++. ++.+|++|++.+.+..
T Consensus 183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~ 218 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSN 218 (360)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcc
Confidence 58899999999999999998 4899999988876653
No 396
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.64 E-value=0.23 Score=36.87 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
++.|||.|.+|-++|..| +.+|.+|..+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999997 689999999988754
No 397
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.63 E-value=0.65 Score=43.87 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCEEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (328)
Q Consensus 165 g~tvgIiG~-G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a 237 (328)
|.++.|.|. |.+|+..++. ++.+|+ +|++.+++.... ++... ..|....-.....++.+.+ ...
T Consensus 155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~--~~~~~------~lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC--QLLKS------ELGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH--HHHHH------hcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 489999998 9999999998 489999 799988765432 11110 0122111111112333322 247
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+++-++.. + . + .+.++.++++..+|..+
T Consensus 226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEe
Confidence 899877662 1 1 2 56788899999888875
No 398
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.62 E-value=0.59 Score=44.72 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHhh--c
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E 236 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~ 236 (328)
.|+++.|.|.|.+|...++. ++.+|++ |++.+++.... ++.. +.|....-.....+. .++.. .
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~~--~~~~-------~~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRKL--EWAR-------EFGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHH--HHHH-------HcCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 47899999999999999998 4899985 98888775432 1111 122211100011122 22222 4
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|+|+-++.. +++ + ...+..++++..+|.++-
T Consensus 246 ~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence 7888877652 222 2 345677888888888764
No 399
>PRK07877 hypothetical protein; Provisional
Probab=92.53 E-value=0.36 Score=50.96 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=61.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhH--HHH-----------HHhhhhhhhhc-CCCCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATR--LEK-----------FVTAYGQFLKA-NGEQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~--~~~-----------~~~~~~~~~~~-~~~~~~~~ 224 (328)
..|.+++|+|+|+| +|..+|..|+ ..|. ++..+|...-+. +.. ..+...+.+.+ .....+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 45999999999999 9999999985 5563 777777542110 000 00000000000 00000100
Q ss_pred ----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301 225 ----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (328)
Q Consensus 225 ----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk 263 (328)
....+++++++.+|+|+-|+- +-+++.++|+...++-+
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI 222 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 012368889999999999987 67999999988877533
No 400
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.52 E-value=0.38 Score=43.82 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=29.3
Q ss_pred ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcC
Q 020301 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL 197 (328)
Q Consensus 162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~ 197 (328)
++.||++-|.|. +.||+++|+.|+ .-|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence 467999999997 489999999985 78999877654
No 401
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.46 E-value=0.71 Score=42.58 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH----HHh--hc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE 236 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~ 236 (328)
.|+++.|+|.|.+|...++.+ +.+|++ |++.+++.... +....+ |.... . ...+.. ++. ..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r~--~~a~~~-------Ga~~~-i-~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDRR--ELALSF-------GATAL-A-EPEVLAERQGGLQNGRG 187 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHc-------CCcEe-c-CchhhHHHHHHHhCCCC
Confidence 688999999999999999984 899997 88887765432 111212 22111 0 001111 121 24
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|+++-+..... .-...++.++++..++.++-
T Consensus 188 ~d~vid~~G~~~-----~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 188 VDVALEFSGATA-----AVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCEEEECCCChH-----HHHHHHHHhcCCCEEEEecc
Confidence 799887765211 12345778889999988873
No 402
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.38 E-value=0.34 Score=43.31 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=48.3
Q ss_pred EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEEEEcC
Q 020301 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 168 vgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l~~ 244 (328)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|......... ++..|..-+. +....+|.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 578886 999999999985 57899998888764322211 1222322111 112346778899999999999
Q ss_pred CCC
Q 020301 245 VLD 247 (328)
Q Consensus 245 plt 247 (328)
|..
T Consensus 73 ~~~ 75 (233)
T PF05368_consen 73 PPS 75 (233)
T ss_dssp SCS
T ss_pred Ccc
Confidence 954
No 403
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.33 E-value=0.15 Score=41.90 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~ 199 (328)
.+++.|+|+|.+|.++|+.|+ ..|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 578999999999999999985 5677 788898754
No 404
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.30 E-value=0.55 Score=44.55 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=50.4
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p 245 (328)
+|+|+|. |-.|.++.++|+.--.+++......... ...+.+++++++|++++++|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence 6899985 8999999999864456676655322110 11355678889999999999
Q ss_pred CChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 246 LDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 246 lt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.. .+..+. ... .+.|..+|+.|
T Consensus 59 ~~-~s~~~~-~~~---~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAREAV-SLV---DNPNTCIIDAS 80 (310)
T ss_pred HH-HHHHHH-HHH---HhCCCEEEECC
Confidence 33 333322 111 24688888887
No 405
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.27 E-value=0.2 Score=49.89 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=68.6
Q ss_pred ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
++.|+++.|+|+|.+|.++|+.| ...|.+|.++|....... . ++..|.. .... +. +-+..+|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence 46789999999999999999987 689999999997643221 1 1112221 1011 11 2356799887
Q ss_pred Ec--CCCC-h----h---hhc----cccHHH-Hhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 242 LH--PVLD-K----T---TYH----LINKER-LAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 242 l~--~plt-~----~---t~~----li~~~~-~~~-m-----k~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.. +|.+ + . ++. ++.+-. +.+ + +...+-|.-+.|..--.+-|...|+.
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 53 2321 1 1 111 133222 222 2 33456667788998888888888876
No 406
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.24 E-value=0.66 Score=43.87 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l 242 (328)
.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++.+.. ++...+ +....-.....+ .++.-...|+++-
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~--~~~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKK--EDALKL-------GADEFIATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHH--HHHHHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence 467899999999999999985 79999999998875432 111112 111110000001 1223356789988
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+.+.. ..-...++.++++..+++++.
T Consensus 239 ~~g~~-----~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 239 TVSAS-----HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence 87732 112555677777777777653
No 407
>PRK12742 oxidoreductase; Provisional
Probab=92.24 E-value=0.93 Score=40.17 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.2
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~ 198 (328)
.+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 367899999996 89999999997 4789999876553
No 408
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.24 E-value=0.48 Score=44.46 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=51.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
.|+++.|+|.|.||...++.+ +.+|++ |.+.|+.... .+. +.... . ...-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~r-l~~--------a~~~~-----~--i~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRR-RDG--------ATGYE-----V--LDPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHH-HHh--------hhhcc-----c--cChhhccCCCCCEEEE
Confidence 467899999999999999984 899998 5556665432 111 00000 0 0011111235788887
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+... +.+ -...++.++++..++.++
T Consensus 207 ~~G~-~~~----~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ASGD-PSL----IDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCC-HHH----HHHHHHhhhcCcEEEEEe
Confidence 7652 111 145577788888888765
No 409
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.22 E-value=0.75 Score=43.86 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.|.++.|.|.|.+|..+++.+ +.+|.+|++.++++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence 478999999999999999984 7899999999887643
No 410
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.20 E-value=0.49 Score=45.01 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=48.7
Q ss_pred CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
.+|+||| -|-.|+++.+.|..-=.+++.....+... . ..+.+++++++|++++++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL 58 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence 4799999 79999999999753334565554322111 0 023356678899999999
Q ss_pred CCChhhhccccHHHHhcC-CCCcEEEEcC
Q 020301 245 VLDKTTYHLINKERLATM-KKEAILVNCS 272 (328)
Q Consensus 245 plt~~t~~li~~~~~~~m-k~ga~lIN~a 272 (328)
|.. .. .+...+. +.|..+|+.|
T Consensus 59 p~~-~s-----~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 59 PDD-AA-----REAVALIDNPATRVIDAS 81 (313)
T ss_pred CHH-HH-----HHHHHHHHhCCCEEEECC
Confidence 932 22 2222222 4688888887
No 411
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.19 E-value=0.47 Score=45.30 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHh------cCCcEEEEE--cCCchhHHHHHHhhhhhh---h--hcCCCCCccccccCC
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNLIYY--DLYQATRLEKFVTAYGQF---L--KANGEQPVTWKRASS 229 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~------~fg~~V~~~--d~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 229 (328)
..-++|+|||.|+=|+.+|+.++. .|..+|..| +-....+.+..-+..... . ...-..|.......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 445789999999999999998642 344444444 322111100100000000 0 000112333445678
Q ss_pred HHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 230 l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
+.+.+..||+++..+| .+...=|-++.....|+++..|...-|=
T Consensus 99 l~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecce
Confidence 9999999999999999 3333324477788899999999887763
No 412
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.16 E-value=0.9 Score=42.87 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hcCCEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI 240 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV 240 (328)
.|+++.|.|.|.+|+.+++.+ +.+|++|++.+++.+.. ++...+ |....-.....++.+.+ ...|++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDKA--DLARKL-------GAHHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHHH--HHHHHc-------CCcEEecCCCccHHHHHHhcCCCCEE
Confidence 478999999999999999984 89999999998865431 122222 21111000111222222 346888
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+-+..... .-...++.++++..+++.+
T Consensus 233 i~~~g~~~-----~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LATAPNAK-----AISALVGGLAPRGKLLILG 259 (333)
T ss_pred EECCCchH-----HHHHHHHHcccCCEEEEEe
Confidence 76643111 2234566677777777664
No 413
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.14 E-value=0.61 Score=43.45 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=61.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
++++.|+|.|-.+++++..| ...|+ +|++++|+.++. ++..+.+ + ..+ ...+. ...+|+|+.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~a-~~la~~~-------~---~~~--~~~~~--~~~~dlvINa 185 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKTG-KALAELY-------G---YEW--RPDLG--GIEADILVNV 185 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHh-------C---Ccc--hhhcc--cccCCEEEEC
Confidence 46899999999999999987 57787 599999987532 2222111 0 000 00111 2458999999
Q ss_pred CCCChhh-----hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 244 PVLDKTT-----YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 244 ~plt~~t-----~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
.|..-.. .-.++. +.++++.+++++.=.+ .++.-|.+|-+.|
T Consensus 186 Tp~Gm~~~~~~~~~pi~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 232 (272)
T PRK12550 186 TPIGMAGGPEADKLAFPE---AEIDAASVVFDVVALP-AETPLIRYARARG 232 (272)
T ss_pred CccccCCCCccccCCCCH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence 9853211 012333 3356677777775443 3444444444444
No 414
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=92.07 E-value=1.9 Score=38.89 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=33.3
Q ss_pred eEEEEeCCCCch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC
Q 020301 16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70 (328)
Q Consensus 16 ~~vlv~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~ 70 (328)
|+||+|++-+.. .+.+.|++.|+++...+.-+.....++....+...+|.++..+
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS 56 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTS 56 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEEC
Confidence 689999998764 3457899999888665432221112333333333468777654
No 415
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.00 E-value=0.39 Score=40.63 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=25.0
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEE-EcC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 197 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~ 197 (328)
++||+|+|+||+.+++.+.+.-++++.+ +|+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 6999999999999999864456788776 454
No 416
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.99 E-value=0.46 Score=45.38 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=59.5
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhhc
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~ 236 (328)
-+..++|+|+|. |+||+.+|..++ ++..-++..+|+.. ...+ ..+ +.+... ....... .+..+.++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~-~~g~-a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG-APGV-AAD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC-Cccc-ccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 467789999999 999999999863 14556899999832 1110 001 000010 1111111 122678999
Q ss_pred CCEEEEcCCCChh---hh-cccc------HHHHhcC---CCCcEEEEcCCCc
Q 020301 237 ADVISLHPVLDKT---TY-HLIN------KERLATM---KKEAILVNCSRGP 275 (328)
Q Consensus 237 aDiV~l~~plt~~---t~-~li~------~~~~~~m---k~ga~lIN~aRG~ 275 (328)
||+|++++-.... |+ .++. ++.++.| .+.++++.++-+-
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 9999887653211 11 2221 2333333 5677888886543
No 417
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.88 E-value=0.88 Score=42.72 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhh-----c
Q 020301 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E 236 (328)
Q Consensus 164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~ 236 (328)
.|.++.|.| -|.+|+.+++.+ +.+|++|++.+++.+.. ++...+ |....-... ..++.+.+. .
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AYLKKL-------GFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHHc-------CCCEEEeccccccHHHHHHHhCCCC
Confidence 478999999 599999999984 89999999888765431 111222 221111001 113333322 3
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|+++-++. .+ .+ ...++.++++..+|+.+.
T Consensus 208 vdvv~d~~G-~~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVG-GE----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCC-HH----HH-HHHHHHhCcCcEEEEecc
Confidence 688887765 11 12 567888999999998864
No 418
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.76 E-value=0.72 Score=43.85 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=59.4
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--c-CCHHHHhhcCCEE
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI 240 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDiV 240 (328)
+|+|||. |.+|..+|-.++ .-| -++..+|.. ...-+ ..+ + .+......... . +++.+.++.||+|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~-alD-----L-~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGV-AAD-----L-SHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-cccee-ehH-----h-HhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 7999999 999999999863 334 479999987 22111 011 0 11111111111 1 3456779999999
Q ss_pred EEcCCC--Ch-hhhc-cc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 020301 241 SLHPVL--DK-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDE 279 (328)
Q Consensus 241 ~l~~pl--t~-~t~~-li--~~-------~~~~~mk~ga~lIN~aRG~~vde 279 (328)
+++.-. .| +||- ++ |. +.+..-.|.+++||++- .+|.
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN--PvDv 122 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN--PVNS 122 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chhh
Confidence 887653 22 2331 11 11 23344468999999954 5554
No 419
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.73 E-value=0.74 Score=44.67 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.|+++.|.|.|.+|...++. ++.+|++|++.+++.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChH
Confidence 58899999999999999998 5899999999887653
No 420
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.66 E-value=0.54 Score=46.14 Aligned_cols=102 Identities=21% Similarity=0.139 Sum_probs=61.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhcCC-CCCcc-
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANG-EQPVT- 223 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~-~~~~~- 223 (328)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. +.. + .+...+.+++-. .....
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~ 116 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL 116 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999985 5565 688888653110 000 0 000000001000 00000
Q ss_pred -cc--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301 224 -WK--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (328)
Q Consensus 224 -~~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ 264 (328)
.. ...+..++++++|+|+.|. .+.+++.++|+...+.-+|
T Consensus 117 ~~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 159 (392)
T PRK07878 117 HEFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLAGKP 159 (392)
T ss_pred EeccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 00 1123567899999998875 4678899998887765444
No 421
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.66 E-value=0.83 Score=45.52 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=73.2
Q ss_pred CEEEEEecCHHHHH--HHHHHH---hcCC-cEEEEEcCCchhHHHHHHhhhhhhh-hcCCCCCccccccCCHHHHhhcCC
Q 020301 166 QTVGVIGAGRIGSA--YARMMV---EGFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD 238 (328)
Q Consensus 166 ~tvgIiG~G~IG~~--vA~~l~---~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aD 238 (328)
.+|.|||.|+. .. +.+-+. ..++ -+|..+|..+... +. ...+.+.. +..+ .+......++.++.++.||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence 37999999986 33 222222 1344 6899999987432 11 11111111 2222 2344555679999999999
Q ss_pred EEEEcCCCCh-h----------hhcccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 020301 239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH 285 (328)
Q Consensus 239 iV~l~~plt~-~----------t~~li~----------------------~~~~~~mk~ga~lIN~aRG~~vde~aL~~a 285 (328)
||++..--.- + -+++++ .+.++...|++++||.+-.-=+-..++.+.
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~ 156 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL 156 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence 9987654321 1 122222 122344458999999998876667777766
Q ss_pred HHcCCccEE
Q 020301 286 LKQNPMFRV 294 (328)
Q Consensus 286 L~~g~i~ga 294 (328)
+...++.|.
T Consensus 157 ~~~~kviGl 165 (437)
T cd05298 157 FPNARILNI 165 (437)
T ss_pred CCCCCEEEE
Confidence 544455554
No 422
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.62 E-value=0.74 Score=43.12 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH--HH--hhcCC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREAD 238 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~aD 238 (328)
.|.++.|+|.|.+|+.+++.+ ++.|++ |++.+++.... ++...+ +....-.....+.. .. -...|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL--ELAKKL-------GATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH--HHHHHh-------CCeEEecCCCCCHHHHHHhcCCCCc
Confidence 568999999999999999985 899998 88888765432 111111 11100000001111 11 24579
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
+++.+++.. ......++.|+++..+|+++...
T Consensus 229 ~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 229 VVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred EEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence 998876521 13345567788888888876543
No 423
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.60 E-value=0.62 Score=42.00 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=33.2
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.+.||++.|.|. |.||+.+|+.|+ .-|++|+..+++..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 478999999996 999999999985 67999999998764
No 424
>PLN02740 Alcohol dehydrogenase-like
Probab=91.58 E-value=0.94 Score=43.85 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 200 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~ 200 (328)
.|.+|.|+|.|.+|...++. ++.+|+ +|++.+++..
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChH
Confidence 58899999999999999998 489999 6999888654
No 425
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=91.54 E-value=0.4 Score=40.43 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=59.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
..|++|++||+ + +.++++| +.-+.++.++|+++..... ..... .....++++++||+|++
T Consensus 9 ~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~~-~~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 9 GPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGDV-PDEDAEEILPWADVVII 68 (147)
T ss_dssp TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--S---------------SCT-E-EGGGHHHHGGG-SEEEE
T ss_pred cCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCcC-CHHHHHHHHccCCEEEE
Confidence 56899999996 2 2367776 5788999999998754211 00000 22466789999999987
Q ss_pred cCCCChhhhcccc---HHHHhcCCCCcEEEEcCCC-------------------cccCHHHHHHHHHcCC
Q 020301 243 HPVLDKTTYHLIN---KERLATMKKEAILVNCSRG-------------------PVIDEVALVEHLKQNP 290 (328)
Q Consensus 243 ~~plt~~t~~li~---~~~~~~mk~ga~lIN~aRG-------------------~~vde~aL~~aL~~g~ 290 (328)
.-. -++| ++.|++.++++.++=.+=. -+.|.+.+.+++++|.
T Consensus 69 TGs------TlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 69 TGS------TLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG 132 (147)
T ss_dssp ECH------HCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred Eee------eeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 631 1233 4556666655544433211 1356777777777663
No 426
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.33 E-value=0.97 Score=41.21 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=61.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV 239 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi 239 (328)
+.|++|.=||+| |..+++-|| ..|++|++.|.+.+.-. ..+.+ +.+.+.. ..+ ...+.+++.+ +-|+
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mA-r~Ga~VtgiD~se~~I~--~Ak~h---a~e~gv~-i~y-~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLA-RLGASVTGIDASEKPIE--VAKLH---ALESGVN-IDY-RQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHH-HCCCeeEEecCChHHHH--HHHHh---hhhcccc-ccc-hhhhHHHHHhcCCCccE
Confidence 789999999999 778998874 78999999999875421 11111 1222221 111 2346677776 6899
Q ss_pred EEE-----cCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301 240 ISL-----HPVLDKTTYHLINKERLATMKKEAILVN 270 (328)
Q Consensus 240 V~l-----~~plt~~t~~li~~~~~~~mk~ga~lIN 270 (328)
|++ |+|. |+. |-+...+++|||.+++-
T Consensus 128 V~cmEVlEHv~d-p~~---~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 128 VTCMEVLEHVPD-PES---FLRACAKLVKPGGILFL 159 (243)
T ss_pred EEEhhHHHccCC-HHH---HHHHHHHHcCCCcEEEE
Confidence 965 5662 222 44568888899876653
No 427
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.29 E-value=1.5 Score=43.49 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=72.2
Q ss_pred CEEEEEecCHHHH-HHHHHHHh---cCC-cEEEEEcCC-chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 166 QTVGVIGAGRIGS-AYARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 166 ~tvgIiG~G~IG~-~vA~~l~~---~fg-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
.+|.|||.|+.-. .+.+-+++ .++ -+|..||.. +... +. ...+.+...+....+.......++++.+..|||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl-~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKL-EI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 3799999999733 22232222 344 689999998 4332 11 111111111111123344556799999999999
Q ss_pred EEEcCCCChh-hh----------ccc-------------------cHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301 240 ISLHPVLDKT-TY----------HLI-------------------NKE---RLATMKKEAILVNCSRGPVIDEVALVEHL 286 (328)
Q Consensus 240 V~l~~plt~~-t~----------~li-------------------~~~---~~~~mk~ga~lIN~aRG~~vde~aL~~aL 286 (328)
|+++.--... .+ +++ -.+ .+....|++++||.+-.-=+-..++.+..
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~ 158 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT 158 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence 9887542221 11 110 011 22333489999999887766677777665
Q ss_pred HcCCccEEE
Q 020301 287 KQNPMFRVG 295 (328)
Q Consensus 287 ~~g~i~gaa 295 (328)
..++.|.+
T Consensus 159 -~~rviGlc 166 (419)
T cd05296 159 -GDRVIGLC 166 (419)
T ss_pred -cCCEEeeC
Confidence 45666664
No 428
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.27 E-value=0.89 Score=43.11 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.|.++.|.|.|.+|...++. ++.+|++|++.+++..+. +.. ++-|....-. .. ++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~--~~a-------~~~Ga~~vi~--~~--~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR--RLA-------LALGAASAGG--AY--DTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH--HHH-------HHhCCceecc--cc--ccCcccceEEEEC
Confidence 47899999999999988887 589999999988876532 222 2223211100 00 0111245766655
Q ss_pred CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
... .+ .-...++.++++..++.++.
T Consensus 231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA-GG----LVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence 442 21 23456777888888887663
No 429
>PLN02214 cinnamoyl-CoA reductase
Probab=91.22 E-value=0.65 Score=44.36 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhcCC
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREAD 238 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aD 238 (328)
.+.++++.|.|. |-||+.+++.| ..-|.+|.+.+|............... . ..... ........+++++++.+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEG-G-KERLILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhC-C-CCcEEEEecCcCChHHHHHHHhcCC
Confidence 467899999998 99999999997 467999999888654211111100000 0 00000 001112245678889999
Q ss_pred EEEEcCC
Q 020301 239 VISLHPV 245 (328)
Q Consensus 239 iV~l~~p 245 (328)
+|+.+..
T Consensus 84 ~Vih~A~ 90 (342)
T PLN02214 84 GVFHTAS 90 (342)
T ss_pred EEEEecC
Confidence 9877664
No 430
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.19 E-value=1.3 Score=42.77 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=55.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC----HHHHhh--cCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--EAD 238 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~--~aD 238 (328)
.++.|+|.|.||...+.. ++.+|+ +|++.|+++... + ...++ .+..........+ ..++-. .+|
T Consensus 170 ~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~-~A~~~------~g~~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 170 GTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-E-LAKEA------GGADVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-H-HHHHh------CCCeEeecCccccHHHHHHHHhCCCCCC
Confidence 399999999999998887 478996 677778876542 1 11110 1111110000001 113332 499
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
+++-|.. ++. .-...++..+++..++.++=
T Consensus 241 ~vie~~G-~~~----~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 241 VVIEAVG-SPP----ALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred EEEECCC-CHH----HHHHHHHHhcCCCEEEEEec
Confidence 9999987 222 22456677777777777754
No 431
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.16 E-value=1.2 Score=45.14 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=53.9
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-------------HHHHHHhhhhhhhhcCCCC---Cccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~ 224 (328)
..-..++|+|||-|.-|-..|+.+++..|.+|..|++.+.+ ........|...+...+.. ....
T Consensus 35 ~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 35 NEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 34568999999999999999996555569999999886542 1111112221112122211 1111
Q ss_pred cccCCHHHHhhcCCEEEEcCCCC
Q 020301 225 KRASSMDEVLREADVISLHPVLD 247 (328)
Q Consensus 225 ~~~~~l~ell~~aDiV~l~~plt 247 (328)
....++++|.+..|.|++++-..
T Consensus 115 G~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 115 GVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred cCccCHHHHHhcCCEEEEEcCCC
Confidence 12346889989999998887533
No 432
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.04 E-value=1.1 Score=42.92 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l 242 (328)
.|.++.|.|.|.+|..+++. ++..|++|++.+.+.+.. +...+.+ |...... .....+.++....|+++-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~-~~~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKR-EEALEHL-------GADDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHH-HHHHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence 57899999999999999998 489999998887765432 1111112 2110000 000123333345788888
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+++... .-...++.++++..++.++
T Consensus 251 ~~g~~~-----~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TVPVFH-----PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCCchH-----HHHHHHHHhccCCEEEEEC
Confidence 876321 1234556677777777765
No 433
>PRK13529 malate dehydrogenase; Provisional
Probab=91.02 E-value=7.5 Score=39.87 Aligned_cols=181 Identities=20% Similarity=0.251 Sum_probs=111.3
Q ss_pred hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
+..|++.|+-- +.+|--+++-+|+..|- .|..|...++.|+|.|..|-.+|+.+..
T Consensus 261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 34677877643 34677778888877762 2357888999999999999999998753
Q ss_pred c---CCc-------EEEEEcCCc---h--hHHHHHHhhhhhhhhcCCCCCccc---cccCCHHHHhhcC--CEEEEcCCC
Q 020301 187 G---FKM-------NLIYYDLYQ---A--TRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL 246 (328)
Q Consensus 187 ~---fg~-------~V~~~d~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~~pl 246 (328)
+ .|+ +++.+|+.- . ..+..+...|. +.... ...+ ....+|.|+++.+ |+++=+
T Consensus 317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~~~~-~~~~~~~~~~~~L~e~v~~~kPtvLIG~--- 389 (563)
T PRK13529 317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RKREE-LADWDTEGDVISLLEVVRNVKPTVLIGV--- 389 (563)
T ss_pred HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hhccc-ccccccccCCCCHHHHHhccCCCEEEEe---
Confidence 2 466 899988751 1 11222222332 11110 0001 1225899999998 988643
Q ss_pred ChhhhccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-ccEEEEeCCCCCCCC-C---CCcccCCCeE
Q 020301 247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAI 316 (328)
Q Consensus 247 t~~t~~li~~~~~~~mk~---ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~-~---~~L~~~~nvi 316 (328)
...-+.|+++.++.|.+ ..++.=.|.-..--|-.-.+|.+ +|+ |.+.|.- | .|.. + ..--+..|++
T Consensus 390 -S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~ 465 (563)
T PRK13529 390 -SGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-F--APVEYNGKTYPIGQCNNAY 465 (563)
T ss_pred -cCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-C--CCeeeCCeEeccCcCccee
Confidence 12247999999999987 89999998877633333333333 353 4444321 1 1110 0 1234568888
Q ss_pred EcCCCC
Q 020301 317 VVPHIA 322 (328)
Q Consensus 317 lTPHia 322 (328)
+-|=++
T Consensus 466 iFPGig 471 (563)
T PRK13529 466 IFPGLG 471 (563)
T ss_pred ecccch
Confidence 888765
No 434
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.99 E-value=1.2 Score=42.59 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhh-----c
Q 020301 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E 236 (328)
Q Consensus 164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~ 236 (328)
.|.++.|.|. |.+|...++. ++.+|++|++.+++.... ++.. +.-|....-... ..++.+.+. .
T Consensus 158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~--~~~~------~~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV--DLLK------NKLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH--HHHH------HhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 5889999999 9999999998 489999999988765432 1111 011221111101 113443332 3
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.|+++-++.. . .-...++.++++..++.++
T Consensus 229 vD~v~d~vG~--~----~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDNVGG--D----MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEECCCH--H----HHHHHHHHhccCCEEEEEC
Confidence 6888877651 1 1245677788888887664
No 435
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.92 E-value=1.2 Score=42.82 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=31.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 200 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~ 200 (328)
.|.+|.|+|.|.+|...++. ++.+|+ +|++.+++..
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~-ak~~G~~~vi~~~~~~~ 223 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEG-ARIRGASRIIGVDLNPS 223 (369)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHH
Confidence 58899999999999999998 489999 7999988754
No 436
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.89 E-value=1.2 Score=42.30 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH---HHhh--cC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLR--EA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~--~a 237 (328)
.|+++.|.|.|.+|...++.+ +.+|.+ |++.+++.... +....+ |....-.....+.+ ++.. ..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~--~~~~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEKL--ALAKSL-------GAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH--HHHHHc-------CCceEecCcccCHHHHHHHhcCCCC
Confidence 478999999999999999984 899997 67888765432 111222 21110000001122 2222 34
Q ss_pred C-EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 238 D-iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
| +++-|... +. .+ ...++.++++..++..+
T Consensus 230 d~~v~d~~G~-~~---~~-~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAGV-PQ---TV-ELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCCC-HH---HH-HHHHHHhhcCCEEEEEc
Confidence 6 66666542 21 12 45678888888888875
No 437
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=90.71 E-value=2.3 Score=42.39 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=66.5
Q ss_pred CEEEEEec-CHHHHHHHHHHHhc--CC------cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHh
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVL 234 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell 234 (328)
.+|+|||. |.+|..+|-.|+.+ || -+++.+|+..+.......+-. +...+. ...-..+-.+.+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~------daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELE------DSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHH------HhhhhhcCceEEecCCHHHh
Confidence 37999999 99999999886532 22 378889987654322222210 111010 111012445778
Q ss_pred hcCCEEEEcCCCC--h-hhhc--------ccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 235 READVISLHPVLD--K-TTYH--------LIN--KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 235 ~~aDiV~l~~plt--~-~t~~--------li~--~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
+.||+|++..-.. + +|+. ++. ...+.. -+|++++|+++ ..+|.-+.+-.=.+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9999999986531 1 1211 111 123444 46799999996 67777766554333
No 438
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.71 E-value=0.36 Score=45.72 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=33.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~ 201 (328)
=.|+|++|+|+|.+|.++++-+ ++.|+ +|++.|.++++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHH
Confidence 3689999999999999999984 78897 79999998764
No 439
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=90.60 E-value=7.5 Score=36.70 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=66.6
Q ss_pred cCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (328)
Q Consensus 163 l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (328)
+.|+|+..+|=| +++.++.... ..|||+|...-|-.-...+++.+.-.+.+...| ....-..++++.++.||+|.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t~d~~eAv~gADvvy 226 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLTEDPEEAVKGADVVY 226 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEecCHHHHhCCCCEEE
Confidence 999999999977 5777777764 579999998877532222222211001111111 12223468999999999996
Q ss_pred EcCCC--Chhhh-----------ccccHHHHhcCCCCcEEEEc
Q 020301 242 LHPVL--DKTTY-----------HLINKERLATMKKEAILVNC 271 (328)
Q Consensus 242 l~~pl--t~~t~-----------~li~~~~~~~mk~ga~lIN~ 271 (328)
.-+.. ..+.+ --+|++.++.-+++++|.-+
T Consensus 227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 44322 12221 34788888888999998887
No 440
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.52 E-value=1.7 Score=41.20 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHhh--c
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E 236 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~ 236 (328)
.|+++.|.|.|.+|+.+++.+ +..|+ +|++.+++.... +....+ |....-.....++ .++.. .
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~--~~~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARR--ELAEEL-------GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence 578999999999999999985 89999 788888765432 111112 2111100011122 23332 3
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|+++-+.... . .-...++.++++..++.++.
T Consensus 242 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDCAGVQ-A----TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEECCCCH-H----HHHHHHHhccCCCEEEEEcc
Confidence 89998876521 1 12455677888888887753
No 441
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.52 E-value=1.1 Score=44.41 Aligned_cols=126 Identities=10% Similarity=0.183 Sum_probs=71.8
Q ss_pred EEEEEecCHHHHH--HHHHHHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301 167 TVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (328)
Q Consensus 167 tvgIiG~G~IG~~--vA~~l~~---~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (328)
+|.|||.|+. .. +.+-+++ .| +-+|..||..+... +. ...+.+...+....+......+++++.++.||||
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 7999999985 32 2222221 34 36899999886431 11 1111111222222234455568999999999999
Q ss_pred EEcCCCCh-hh----------hcccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 241 SLHPVLDK-TT----------YHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 241 ~l~~plt~-~t----------~~li~----------------------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
++.+--.. +. ++++. .+.+....|++++||.+-.-=+-..++.+...
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~p 158 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP 158 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhCC
Confidence 88764322 11 11111 11222334899999998877666777777753
Q ss_pred cCCccEEE
Q 020301 288 QNPMFRVG 295 (328)
Q Consensus 288 ~g~i~gaa 295 (328)
..++.|.+
T Consensus 159 ~~rviG~c 166 (425)
T cd05197 159 PEKAVGLC 166 (425)
T ss_pred CCcEEEEC
Confidence 34555543
No 442
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=90.43 E-value=1.1 Score=45.48 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=65.7
Q ss_pred ccCCCEEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (328)
Q Consensus 162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (328)
.+.|++|+++|= +++..+++..+ ..|| |+|.+..|..-...+++.+ .++..| .......++++.+++|
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~----~a~~~G---~~v~i~~d~~eav~~A 242 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVE----KMKKNG---FEVRIFSSIEEYLSQK 242 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhccC
Confidence 478999999998 58999999986 5798 9999988743211112111 111212 1223357899999999
Q ss_pred CEE--EE-------cCCCC-----hhh--hccccHHHHhcCCCCcEEEEc
Q 020301 238 DVI--SL-------HPVLD-----KTT--YHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 238 DiV--~l-------~~plt-----~~t--~~li~~~~~~~mk~ga~lIN~ 271 (328)
|+. .. .++.. .+. .-.++++.++.+|+++++.=+
T Consensus 243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc 292 (525)
T PRK13376 243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP 292 (525)
T ss_pred CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence 952 12 22211 111 234689999999999888776
No 443
>PRK08324 short chain dehydrogenase; Validated
Probab=90.31 E-value=0.79 Score=48.21 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.6
Q ss_pred cccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 161 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
..+.|+++.|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999997 5779999999998643
No 444
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.27 E-value=1.6 Score=40.77 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=56.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHhhcCCEEEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISL 242 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l 242 (328)
.|.++.|+|.|.+|+.+++.+ +.+|.+|++.+++.... ++...+ +....-.....+. ...-...|+++-
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKR--ELARKL-------GADEVVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHh-------CCcEEeccCCcchHHhccCCCCEEEE
Confidence 467899999999999998885 89999999998876432 111111 1111000000011 111235788887
Q ss_pred cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
++.... ...+.++.|+++..+|+++
T Consensus 232 ~~~~~~-----~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 232 TVVSGA-----AAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCCcHH-----HHHHHHHhcccCCEEEEEC
Confidence 765211 2355678888888888875
No 445
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.27 E-value=1.3 Score=42.55 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=31.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~ 201 (328)
.|.++.|.|.|.||...++. ++.+|+ +|++.+++...
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 47899999999999999998 489999 79999887643
No 446
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=90.21 E-value=0.66 Score=42.77 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (328)
Q Consensus 177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~ 256 (328)
|..+|-.++ .-|-.|+..||+.+-..++.. ...++.| ....++-.+..+.+.+.++..|..+.|-++ -+
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w----~~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I-ar 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHW----KRVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGI-AR 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHHH----HHHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHH-HH
Confidence 677887775 569999999998753322211 1122333 222345567889999999999999999884 48
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (328)
Q Consensus 257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~ 287 (328)
+.++.++.|+++.||..-+. -.|+.-|+
T Consensus 102 ei~~hvpEgAVicnTCT~sp---~vLy~~LE 129 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSP---VVLYYSLE 129 (340)
T ss_pred HHHhhCcCCcEecccccCch---hHHHHHhh
Confidence 89999999999999987554 45677763
No 447
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.09 E-value=2.1 Score=33.12 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=48.2
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHH--HHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVE--DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (328)
Q Consensus 17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~ 92 (328)
+||+... -....+.+.+++.|+++... ..+...+.. .+...+. .+|.||+.. ..++......+.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~-~aD~VIv~t-~~vsH~~~~~vk--------- 68 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIK-KADLVIVFT-DYVSHNAMWKVK--------- 68 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcC-CCCEEEEEe-CCcChHHHHHHH---------
Confidence 3556555 33345678888999988766 222222223 3677776 699888763 456666655443
Q ss_pred ccccCCccChhHHHhCCceEecCCCC
Q 020301 93 MAVGYNNVDVNAANKYGIAVGNTPGV 118 (328)
Q Consensus 93 ~g~G~d~id~~~~~~~gI~v~n~p~~ 118 (328)
+.|++.||++....+.
T Consensus 69 ----------~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 69 ----------KAAKKYGIPIIYSRSR 84 (97)
T ss_pred ----------HHHHHcCCcEEEECCC
Confidence 3466777777665543
No 448
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.08 E-value=0.32 Score=43.38 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=51.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhH--HHHHHhhhhhhhhcCCCC--Ccccc--ccCC---HHHHhhc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATR--LEKFVTAYGQFLKANGEQ--PVTWK--RASS---MDEVLRE 236 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~--~~~~---l~ell~~ 236 (328)
+.-=+|.| +|+.+.... ..++++ .++....+... .+.....+....+.-|.. +.... ...+ .+.++++
T Consensus 45 vF~DlGSG-~G~~v~~aa-l~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 45 VFYDLGSG-VGNVVFQAA-LQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp EEEEES-T-TSHHHHHHH-HHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred EEEECCCC-CCHHHHHHH-HHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 44456666 578877763 467886 88887665421 111112222222211211 11111 1112 3456799
Q ss_pred CCEEEEcC-CCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301 237 ADVISLHP-VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (328)
Q Consensus 237 aDiV~l~~-plt~~t~~li~~~~~~~mk~ga~lIN~aRG~ 275 (328)
||+|+++- -.+++...-+ .+.|..||+|+.+|.+.+-.
T Consensus 123 AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 123 ADVVFVNNTCFDPDLNLAL-AELLLELKPGARIISTKPFC 161 (205)
T ss_dssp -SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEEESS-SS
T ss_pred CCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEEECCCcC
Confidence 99998753 2345555545 78889999999999886533
No 449
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.08 E-value=0.78 Score=47.16 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=32.5
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
-.|+++.|.|. |.||+.+++.|+ ..|++|.+++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHH
Confidence 46889999997 999999999974 679999999987643
No 450
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=89.97 E-value=1.6 Score=41.19 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc-CCHHH----Hhh-cC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a 237 (328)
.|+++.|.|.|.+|+.+++.+ +.+|++|++.+++.+.. +....+ |....-.... .++.+ +.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKL--ELAREL-------GAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHH--HHHHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence 478999999999999999985 89999999887765432 111222 2111100011 12222 221 47
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+++-++.. .. .-...+..|+++..+|+.+.
T Consensus 235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCC
Confidence 888776542 11 12345777888888887754
No 451
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.96 E-value=1.3 Score=43.55 Aligned_cols=90 Identities=8% Similarity=-0.099 Sum_probs=54.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (328)
..++-|+|+|++|+.+++.| +..|.++.+.|+.... + ...++.. .-....++.+.+ +++|+.|
T Consensus 240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~---~--------~~~~g~~-vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLE---H--------RLPDDAD-LIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhh---h--------hccCCCc-EEEeCCCCHHHHHhcCcccCCEE
Confidence 56799999999999999997 5778888888865321 1 0111211 111112233322 5689999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILV 269 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lI 269 (328)
+++.+...++.. -....+.+.|+..+|
T Consensus 307 I~~t~dD~~Nl~--ivL~ar~l~p~~kII 333 (393)
T PRK10537 307 LALRDNDADNAF--VVLAAKEMSSDVKTV 333 (393)
T ss_pred EEcCCChHHHHH--HHHHHHHhCCCCcEE
Confidence 988885544433 233455566654444
No 452
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.95 E-value=1.1 Score=42.84 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=58.7
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchh-HHHH-HHhhhhhhhhcCCCCCc--cccccCCHHHHh
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEK-FVTAYGQFLKANGEQPV--TWKRASSMDEVL 234 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg~-------~V~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~ell 234 (328)
+|+|||. |.+|+.+|-.|. ..|. ++..+|..... ..+. ..+- . +...+. ...-..+..+.+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~-~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----E-DCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----h-hccccccCCcEEecChHHHh
Confidence 7999999 999999998763 3343 79999985421 1111 1110 0 011010 011113556788
Q ss_pred hcCCEEEEcCCCC--h-hhhcc-c--cH-------HHHhcCCC-CcEEEEcCCCcccCHHH
Q 020301 235 READVISLHPVLD--K-TTYHL-I--NK-------ERLATMKK-EAILVNCSRGPVIDEVA 281 (328)
Q Consensus 235 ~~aDiV~l~~plt--~-~t~~l-i--~~-------~~~~~mk~-ga~lIN~aRG~~vde~a 281 (328)
+.||+|+++.-.. + +|+.- + |. ..+....| ++++|.++ ..+|.-.
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9999999876432 1 23321 1 11 12333434 89999986 5555443
No 453
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.82 E-value=1.9 Score=41.42 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~ 201 (328)
..|.++.|+|.|.+|...++. ++.+|+ +|++.+++...
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~ 221 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence 358899999999999999998 589999 79998886543
No 454
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=89.73 E-value=1.9 Score=39.79 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHh--hc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--RE 236 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell--~~ 236 (328)
.|.++.|.|.|.+|+.+++.+ +..|++ |++.++..... +..+.+ +....-.....++ .++. ..
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~l~~~~~~~~ 198 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPARL--ALAREL-------GATEVVTDDSEAIVERVRELTGGAG 198 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH--HHHHHh-------CCceEecCCCcCHHHHHHHHcCCCC
Confidence 578899999999999999984 899999 88887764322 122222 1111100011122 2222 23
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
.|+++-+.... ......++.|+++..+++++.
T Consensus 199 vd~vld~~g~~-----~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 199 ADVVIEAVGHQ-----WPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CCEEEECCCCH-----HHHHHHHHHhccCCEEEEEcc
Confidence 78887765421 123445677888888887753
No 455
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.73 E-value=0.7 Score=41.54 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.4
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.+.||++.|.|. |.||+.+|+.|+ .-|++|+..+++...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 477999999996 789999999985 679999999988643
No 456
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.64 E-value=0.91 Score=40.51 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=33.2
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
++.++++.|+|. |.||+++++.|+ ..|++|++.+|+...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 367899999996 899999999984 679999999998643
No 457
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.59 E-value=0.5 Score=46.95 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=66.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc--CCCCCccccccCCHHHHhhcCCEEEE
Q 020301 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+-+++|+|+|.+|+++|+.| ...|.+|.++|........+. ++. .|.... . ...+ .+.+.++|+|+.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~~g~~~~-~-~~~~-~~~~~~~d~vV~ 74 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREFPDVELR-C-GGFD-CELLVQASEIII 74 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhcCCcEEE-e-CCCC-hHHhcCCCEEEE
Confidence 45799999999999999997 689999999997643211110 111 011100 0 0112 345678898866
Q ss_pred cC--CCC-hhh-------hccccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 243 HP--VLD-KTT-------YHLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 243 ~~--plt-~~t-------~~li~~~-~~-~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
.- |.+ |+- ..++++- .+ ..++...+-|--+.|..--..-+...|+.
T Consensus 75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 53 322 221 1234433 22 23444455666678988888888888875
No 458
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.58 E-value=0.78 Score=41.45 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=32.3
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.+.||++-|.|. |-||+.+|+.| ...|++|++.+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 478999999985 58999999998 478999999998754
No 459
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.56 E-value=2 Score=40.61 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHh-----hc
Q 020301 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVL-----RE 236 (328)
Q Consensus 164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell-----~~ 236 (328)
.|.++.|.|. |.+|+.+++. ++.+|++|++.+++.... ++... .-|....-. ....++.+.+ ..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~~--~~~~~------~lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEKV--DLLKN------KLGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH--HHHHH------hcCCceeEEcCCcccHHHHHHHhCCCC
Confidence 5789999998 9999999998 489999999887765432 11111 012211100 0111333322 24
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
.|+++-++.. . .-.+.++.++++..+++.+
T Consensus 222 vd~v~d~~g~--~----~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDNVGG--K----MLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEECCCH--H----HHHHHHHHhccCcEEEEec
Confidence 6888876541 1 1245677788888888765
No 460
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.55 E-value=0.49 Score=47.33 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=65.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (328)
.|++++|+|+|.-|.++|+.| +. |++|+++|....... .. .. .+ . ... .. ....+.+.++|+|+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~-~~----~~--~-~~~--~~-~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IF-EE----LY--S-KNA--IA-ALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HH-Hh----hh--c-Cce--ec-cCChhHhhCCCEEEEC
Confidence 478999999999999999997 45 999999995432211 10 00 00 0 000 01 1123456789998765
Q ss_pred C--CC-Chhh-------hccccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020301 244 P--VL-DKTT-------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 244 ~--pl-t~~t-------~~li~~~~~--~~mk~-ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
- |. +|.- ..++++-.| ..+++ ..+=|--+-|..--..-|...|+.
T Consensus 71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 3 22 2211 124444433 33432 345555567988888888888886
No 461
>PRK10083 putative oxidoreductase; Provisional
Probab=89.53 E-value=1.8 Score=40.72 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh----cC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~a 237 (328)
.|.++.|.|.|.+|+.+++.+ +. +|++ |++.++..... +....+ |....-.....++.+.+. ..
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a-~~~~G~~~v~~~~~~~~~~--~~~~~~-------Ga~~~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVL-KGVYNVKAVIVADRIDERL--ALAKES-------GADWVINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHhCCCCEEEEEcCCHHHH--HHHHHh-------CCcEEecCccccHHHHHhcCCCCC
Confidence 478999999999999999984 65 6986 66777765432 111112 221110011123444332 23
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
|+++-+... +. .-.+.++.++++..+|+++.
T Consensus 230 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 230 TLIIDAACH-PS----ILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcc
Confidence 566655441 11 12455677788888888754
No 462
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.43 E-value=1.9 Score=40.17 Aligned_cols=93 Identities=22% Similarity=0.183 Sum_probs=55.6
Q ss_pred CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (328)
Q Consensus 164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a 237 (328)
.|.++.|.| .|.+|+.+++.+ +.+|++|++.+++.+.. ++. ++.|....-.....++.+.+ ...
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA-~~~G~~vi~~~~s~~~~--~~l-------~~~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIA-KIKGCKVIGCAGSDDKV--AWL-------KELGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHH-------HHcCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 478999999 599999999984 89999999888765432 111 11222111111112332222 235
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
|+|+-++.. + .....++.++++..+++.+
T Consensus 213 d~vld~~g~--~----~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 213 DCYFDNVGG--E----FSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEEECCCH--H----HHHHHHHhhccCCEEEEEc
Confidence 777766541 1 1256677788888887765
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.33 E-value=1.4 Score=40.12 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=33.1
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
.+.|+++-|.|. |.||+++|+.|+ ..|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 477899999997 899999999984 67999999998754
No 464
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.32 E-value=1.1 Score=41.72 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
+..+.|+++.|.|. |.||+++|+.|+ .-|++|+..+|+..
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 45688999999997 999999999985 67999999999864
No 465
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.26 E-value=0.82 Score=43.69 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=61.5
Q ss_pred CEEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchhH-HHHH-HhhhhhhhhcCCCCCc--cccccCCHHHH
Q 020301 166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEKF-VTAYGQFLKANGEQPV--TWKRASSMDEV 233 (328)
Q Consensus 166 ~tvgIiG~-G~IG~~vA~~l~~~fg~-------~V~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~el 233 (328)
++|+|||. |.+|..+|-.++ .-|. ++..+|...... .+.. .|- .+...+. ...-..+..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl------~~~~~~~~~~~~i~~~~~~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAMEL------EDCAFPLLAEIVITDDPNVA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehhh------hhccccccCceEEecCcHHH
Confidence 48999999 999999998764 3333 799999854221 1110 110 0011010 01111355677
Q ss_pred hhcCCEEEEcCCCC--h-hhhc-cc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 020301 234 LREADVISLHPVLD--K-TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALVEH 285 (328)
Q Consensus 234 l~~aDiV~l~~plt--~-~t~~-li--~~-------~~~~~mk-~ga~lIN~aRG~~vde~aL~~a 285 (328)
++.||+|+++.-.. + +|+. ++ |. ..+.... |.+++|+++ ..+|.-.-+-.
T Consensus 76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 89999999886532 1 1221 11 11 1233334 589999996 66666654443
No 466
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.24 E-value=1.2 Score=44.16 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=67.5
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC---CHHHHhhcCCEEEEc
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLREADVISLH 243 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~~aDiV~l~ 243 (328)
++.|||+|..|.+.|+.| ...|.+|.++|....+......+ .+++.|..-. ..... .+.+.+.+.|.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi~~~-~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGITVK-LGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCCEEE-ECCccchhhhhHHhhcCCEEEEC
Confidence 589999999999999987 58899999999875443221100 1122222110 00001 223567889998774
Q ss_pred CCCChhhh----------ccccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020301 244 PVLDKTTY----------HLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 244 ~plt~~t~----------~li~~~~~--~~mk~-ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
-...++.. .++.+-.+ ..+++ ..+-|--+.|..--..-|...|+.
T Consensus 76 ~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 76 PGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 43322211 12333322 33333 355566678988888877788875
No 467
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=89.19 E-value=12 Score=38.45 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=109.8
Q ss_pred CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh-
Q 020301 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE- 186 (328)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~- 186 (328)
..|++.|+-- +.+|-.+++-+|+.+|-. |..|...++.|.|.|.-|-.+|+.+..
T Consensus 264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 264 NKYRCFNDDI---QGTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred cCCCEecccc---hhHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence 3577777643 346777888888777632 356889999999999999999998743
Q ss_pred --cCCc-------EEEEEcCCch------hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC--CEEEEcCCCChh
Q 020301 187 --GFKM-------NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT 249 (328)
Q Consensus 187 --~fg~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~plt~~ 249 (328)
..|. +++.+|+.-- ..+..+...|. +...... .....+|.|+++.+ |+++=+ ..
T Consensus 320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~----S~ 390 (559)
T PTZ00317 320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGL----SG 390 (559)
T ss_pred HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEe----cC
Confidence 2466 8888886520 10222222221 1110000 00135899999999 998643 12
Q ss_pred hhccccHHHHhcCCC---CcEEEEcCCCcc---cCHHHHHHHHHcCC-ccEEEEeCCCCCCCC-C---CCcccCCCeEEc
Q 020301 250 TYHLINKERLATMKK---EAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVV 318 (328)
Q Consensus 250 t~~li~~~~~~~mk~---ga~lIN~aRG~~---vde~aL~~aL~~g~-i~gaalDV~~~EP~~-~---~~L~~~~nvilT 318 (328)
.-+.|.++.++.|.+ ..++.=.|.-.- ...++.+++= +|+ |.+.|.- | +|.. + ..--+..|+++-
T Consensus 391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T-~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~iF 466 (559)
T PTZ00317 391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWT-NGRAIVASGSP-F--PPVTLNGKTIQPSQGNNLYVF 466 (559)
T ss_pred CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhc-cCCEEEEECCC-C--CCcccCCeeeccCcCcceeec
Confidence 247899999999984 899998888764 3344444442 344 4444321 1 1110 1 123456888988
Q ss_pred CCCC
Q 020301 319 PHIA 322 (328)
Q Consensus 319 PHia 322 (328)
|=++
T Consensus 467 PGig 470 (559)
T PTZ00317 467 PGVG 470 (559)
T ss_pred cchh
Confidence 8765
No 468
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.18 E-value=0.98 Score=40.02 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=31.8
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
+.++++.|+|. |.||+.+++.|+ ..|.+|++.+|++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~ 41 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQK 41 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHH
Confidence 46789999985 999999999985 56999999998764
No 469
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.11 E-value=1.4 Score=42.40 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=57.9
Q ss_pred CEEEEEecCHHHHHHHHHHHh-------cCC--cEEEEE-cCCch-----h-HHHHHHhhhhhhhhcCCCCCcccc----
Q 020301 166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQA-----T-RLEKFVTAYGQFLKANGEQPVTWK---- 225 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~-------~fg--~~V~~~-d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~---- 225 (328)
-+|+|+|+|++|+.+++.+.+ .+| .+|.+. |++.. . ..++.. .+ .+..+.. ..+.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~-~~---~~~~~~~-~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAK-EV---KENFGKL-SNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHH-Hh---hhccCch-hhcccccc
Confidence 479999999999999987643 145 676654 43211 0 000000 00 0011100 0010
Q ss_pred -ccCCHHHHh--hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 020301 226 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN 289 (328)
Q Consensus 226 -~~~~l~ell--~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g 289 (328)
...++++++ ..+|+|+-+.+ ++... +-..+.++.|.-+|-..-|.+- ..+.|.++-++.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~--~~~a~---~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~ 140 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN--DKNAH---EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANER 140 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC--cHHHH---HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHc
Confidence 012678887 47999997775 22221 2222334556666655445432 555666665553
No 470
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.07 E-value=2.2 Score=40.67 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-------HHHHh-
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-------MDEVL- 234 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~ell- 234 (328)
.|+++.|.|.|.+|+.+++.+ +.+|+ +|++.+++.... .....+ |..........+ +.++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~la-k~~G~~~v~~~~~~~~~~--~~~~~~-------g~~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAA-KLAGARRVIVIDGSPERL--ELAREF-------GADATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHHHc-------CCCeEEcCcccccHHHHHHHHHHhC
Confidence 588999999999999999984 89999 999888765432 111111 211110001011 22222
Q ss_pred -hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301 235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (328)
Q Consensus 235 -~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR 273 (328)
...|+++-+..... .....++.++++..+|..+.
T Consensus 247 ~~~~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 247 GRGADVVIEASGHPA-----AVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCCcEEEECCCChH-----HHHHHHHHhccCCEEEEEcC
Confidence 24688887764211 12455677777777777653
No 471
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.04 E-value=11 Score=38.87 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=108.7
Q ss_pred hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (328)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~ 186 (328)
+..|++.|+-- +.+|--+++-+++.+|-. +..|...++.|+|.|.-|-.+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence 34677777543 346777788888777632 357889999999999999999998754
Q ss_pred c----CCc-------EEEEEcCCch-----hH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEEcCCCC
Q 020301 187 G----FKM-------NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD 247 (328)
Q Consensus 187 ~----fg~-------~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~plt 247 (328)
. .|+ +++.+|+.-- .. ...+...|. +.. ....+|.|+++. .|+++=+-
T Consensus 343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~~-------~~~~~L~e~v~~vkptvLIG~S--- 409 (581)
T PLN03129 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HDH-------EPGASLLEAVKAIKPTVLIGLS--- 409 (581)
T ss_pred HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hhc-------ccCCCHHHHHhccCCCEEEEec---
Confidence 2 365 7888887521 11 222222221 111 123689999999 89986431
Q ss_pred hhhhccccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ccEEEEeCCCCCCCC--CCCcccCCCeEEc
Q 020301 248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYM--KPGLSEMKNAIVV 318 (328)
Q Consensus 248 ~~t~~li~~~~~~~mk---~ga~lIN~aRG~~---vde~aL~~aL~~g~-i~gaalDV~~~EP~~--~~~L~~~~nvilT 318 (328)
..-+.|+++.++.|. +..++.=.|.-.- ...++.+++ .+|+ |.+.|. =|++-... ...--+..|+++-
T Consensus 410 -~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGS-Pf~pv~~~Gr~~~p~Q~NN~~iF 486 (581)
T PLN03129 410 -GVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGS-PFDPVEYNGKTFHPGQANNAYIF 486 (581)
T ss_pred -CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCC-CCCCeeeCCeeecCccccceeec
Confidence 124789999999995 8899998887653 334444444 3355 443321 01000000 0123456788888
Q ss_pred CCCC
Q 020301 319 PHIA 322 (328)
Q Consensus 319 PHia 322 (328)
|=++
T Consensus 487 PGig 490 (581)
T PLN03129 487 PGIG 490 (581)
T ss_pred cchh
Confidence 8765
No 472
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.02 E-value=2.1 Score=40.67 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI 240 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV 240 (328)
.|.+|.|+|.|.||...++.+++.+ +.+|++.|+++.+. + . ++..+.. ...+++.. ..|+|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~-~-------a~~~~~~-------~~~~~~~~~~g~d~v 226 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-D-L-------FSFADET-------YLIDDIPEDLAVDHA 226 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-H-H-------HhhcCce-------eehhhhhhccCCcEE
Confidence 4889999999999999888753235 46899999875432 1 1 1111110 01122222 37999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+-++... .+...+ ...++.++++..++.++
T Consensus 227 iD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 FECVGGR-GSQSAI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EECCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence 8877621 011112 34677788888887765
No 473
>PRK06196 oxidoreductase; Provisional
Probab=88.93 E-value=1.3 Score=41.55 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=33.5
Q ss_pred cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
..+.|+++.|.|. |.||+++|+.|+ .-|++|++.+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 3578999999998 789999999985 67999999998754
No 474
>PRK06841 short chain dehydrogenase; Provisional
Probab=88.87 E-value=1.9 Score=38.74 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=33.3
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
++.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~-~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA-AKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 578999999995 999999999985 67999999998754
No 475
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.87 E-value=0.66 Score=45.91 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=65.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (328)
+.++++.|+|+|..|++.++.| +..|.+|.++|.......... ++ .|.. ......-.+.++..|+|+.
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g~~---~~~~~~~~~~~~~~d~vv~ 71 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-ENVE---RHTGSLNDEWLLAADLIVA 71 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cCCE---EEeCCCCHHHhcCCCEEEE
Confidence 5688999999999999999886 688999999997643211010 11 1211 1010112245667886654
Q ss_pred cCCCChhhhc-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301 243 HPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (328)
Q Consensus 243 ~~plt~~t~~-----------li~~-~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~ 288 (328)
. |.-+.+.. ++.+ +.+.. ++...+-|--+.|..--..-|...|+.
T Consensus 72 s-pgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 72 S-PGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred C-CCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4 33322211 2333 33333 333345566677888777778888875
No 476
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=88.87 E-value=2.4 Score=46.70 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=61.1
Q ss_pred CCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-----------HHHHH-HhhhhhhhhcCCC
Q 020301 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-----------RLEKF-VTAYGQFLKANGE 219 (328)
Q Consensus 152 ~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-----------~~~~~-~~~~~~~~~~~~~ 219 (328)
+|.... .+..-.|++|+|||-|.-|...|..| ...|-.|.+|.|+... .+.++ ++.--..+..+|.
T Consensus 1773 gwm~p~-pp~~rtg~~vaiigsgpaglaaadql-nk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPC-PPAFRTGKRVAIIGSGPAGLAAADQL-NKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred cCCccC-CcccccCcEEEEEccCchhhhHHHHH-hhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCc
Confidence 365432 23456899999999999999999997 6789999999886431 11111 1111112333443
Q ss_pred CCc---cccccCCHHHHhhcCCEEEEcCCCC
Q 020301 220 QPV---TWKRASSMDEVLREADVISLHPVLD 247 (328)
Q Consensus 220 ~~~---~~~~~~~l~ell~~aDiV~l~~plt 247 (328)
.-+ ......++++|.++-|.|+++.-.|
T Consensus 1851 ~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1851 RFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred eEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 211 1123468999999999999987655
No 477
>PRK12747 short chain dehydrogenase; Provisional
Probab=88.84 E-value=2.2 Score=38.35 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=28.0
Q ss_pred cCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcC
Q 020301 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL 197 (328)
Q Consensus 163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~ 197 (328)
+.||++.|.| -|-||+++|+.|+ .-|++|+..++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~-~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcC
Confidence 4688999999 4689999999984 78999988653
No 478
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=88.78 E-value=1.3 Score=45.04 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred cccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (328)
..+.|+...++|--.| |..+|..| +-.+..|..+... ..++.|.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence 5689999999998875 88899987 6778899876421 2478899999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (328)
Q Consensus 240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~ 276 (328)
|+..+-- .+++-.+ .+|||+++|+++---+
T Consensus 209 vIvAiG~----PefVKgd---WiKpGavVIDvGINyv 238 (935)
T KOG4230|consen 209 VIVAIGQ----PEFVKGD---WIKPGAVVIDVGINYV 238 (935)
T ss_pred EEEEcCC----cceeecc---cccCCcEEEEcccccc
Confidence 9999763 2333333 4689999999975443
No 479
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.70 E-value=1.6 Score=39.03 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=32.7
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
++.||++.|.|. |.||+.+|+.|+ .-|++|+..+++..
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~~ 40 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSEP 40 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCchH
Confidence 378999999997 789999999985 67999999998653
No 480
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.68 E-value=2.8 Score=40.16 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a 237 (328)
.|+++.|.|.|.+|..+++. ++++|. .|++.+++..+. +....+ +....-.....++.+.+ ...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~l-a~~~G~~~v~~~~~~~~k~--~~~~~~-------g~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMA-AKIAGCTTIIAVDIVDSRL--ELAKEL-------GATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHH--HHHHHc-------CCcEEecCCCcCHHHHHHHHhCCCC
Confidence 57899999999999999998 589999 588888765432 111111 21111000111232222 347
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
|+++-++...+ .-...++.++++..+|.++..
T Consensus 256 d~vld~~g~~~-----~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 256 DYALDTTGVPA-----VIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred cEEEECCCCcH-----HHHHHHHHhccCCEEEEeCcC
Confidence 88887765211 124567778888888887643
No 481
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.65 E-value=2.1 Score=38.92 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH--hhcCCEE
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI 240 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~aDiV 240 (328)
.|.++.|.|.|.+|+.+++.+ +.+|++ |++.+++..... ....+ |.. ..... ..++. -...|++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~--~~~~~-------g~~-~~~~~--~~~~~~~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLA-KAAGAREVVGVDPDAARRE--LAEAL-------GPA-DPVAA--DTADEIGGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEECCCHHHHH--HHHHc-------CCC-ccccc--cchhhhcCCCCCEE
Confidence 578999999999999999984 899999 988887654321 21222 100 00000 00111 1247888
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (328)
Q Consensus 241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG 274 (328)
+.++.... .-...++.++++..+++++-.
T Consensus 164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 164 IEASGSPS-----ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred EEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence 87765321 225567788888888887643
No 482
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.62 E-value=2.3 Score=40.06 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=59.3
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHH-----HhhhhhhhhcCC-CCCc--cccccC
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKF-----VTAYGQFLKANG-EQPV--TWKRAS 228 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~~-----~~~~~~~~~~~~-~~~~--~~~~~~ 228 (328)
+|.|||.|.+|.++++.|+ ..|. ++...|...-+. + ++. .+.-.+.+.+-. .... ......
T Consensus 1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 4899999999999999985 4554 677887542110 0 000 000000000000 0000 001111
Q ss_pred C-HHHHhhcCCEEEEcCCCChhhhccccHHHHhcC-----CCCcEEEEcCCCc
Q 020301 229 S-MDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP 275 (328)
Q Consensus 229 ~-l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m-----k~ga~lIN~aRG~ 275 (328)
+ -++.+++.|+|+.++- +.+++..+|+...+.. +.+.-+|..+-.+
T Consensus 80 ~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 80 DKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred chhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 2 2578899999999876 5678888888766554 2345577765433
No 483
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.61 E-value=1.4 Score=46.14 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~ 199 (328)
-.|++|.|||.|..|...|..| ...|.+|++|++..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L-~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVL-ARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 4799999999999999999997 57899999998753
No 484
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.55 E-value=2.1 Score=38.84 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
+++++.|.|. |.||+.+|+.+++.-|++|+..+|+...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 5678888885 7899999999753335999999987654
No 485
>PRK14851 hypothetical protein; Provisional
Probab=88.50 E-value=0.78 Score=48.24 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.0
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~ 198 (328)
..|.+++|+|+|+|-+|..+|..|+ ..|. ++..+|..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcCC
Confidence 4689999999999999999999975 5554 56667643
No 486
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.42 E-value=4 Score=38.38 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=60.1
Q ss_pred cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHH--H-------H-----HHhhhhhhhhcCC-CCCccc
Q 020301 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--E-------K-----FVTAYGQFLKANG-EQPVTW 224 (328)
Q Consensus 161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~--~-------~-----~~~~~~~~~~~~~-~~~~~~ 224 (328)
..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-... . + ..+.-.+.+++-. ......
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4689999999999999999999985 5676 5888887642110 0 0 0000000000000 001111
Q ss_pred cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (328)
Q Consensus 225 ~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~ 271 (328)
....-.++.+.+.|+|+++.. +.+++..+|+..-+ .+.-+|..
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a 136 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISA 136 (286)
T ss_pred EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEE
Confidence 111123577889998877754 66777777776654 33344444
No 487
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=88.41 E-value=0.63 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.4
Q ss_pred EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
+|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus 1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 589999999999999995 7899999999987643
No 488
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.34 E-value=3.4 Score=37.53 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.1
Q ss_pred ccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (328)
Q Consensus 162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~ 199 (328)
.+.||++.|.|.+ .||+++|+.|+ .-|++|+..+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la-~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCh
Confidence 5789999999986 69999999985 6799999888764
No 489
>PLN02427 UDP-apiose/xylose synthase
Probab=88.31 E-value=1 Score=43.61 Aligned_cols=40 Identities=30% Similarity=0.471 Sum_probs=32.9
Q ss_pred ccccCCCEEEEEec-CHHHHHHHHHHHhcC-CcEEEEEcCCch
Q 020301 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (328)
Q Consensus 160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~~d~~~~ 200 (328)
|..+..++|.|.|. |-||+.+++.|. .- |.+|++.|++..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND 50 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence 56677889999995 999999999985 44 589999997643
No 490
>PLN02827 Alcohol dehydrogenase-like
Probab=88.10 E-value=2.8 Score=40.60 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA 200 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~ 200 (328)
.|.++.|.|.|.+|..+++.+ +.+|++ |++.+++..
T Consensus 193 ~g~~VlV~G~G~vG~~~iqla-k~~G~~~vi~~~~~~~ 229 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGA-KLRGASQIIGVDINPE 229 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHH
Confidence 589999999999999999984 899984 878876654
No 491
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.05 E-value=0.9 Score=40.52 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.9
Q ss_pred cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
+.|+++.|+|. |.||+.+|+.+ ...|.+|+..+++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 67999999998 99999999997 467999999998764
No 492
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.05 E-value=2 Score=39.15 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=32.4
Q ss_pred ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (328)
Q Consensus 162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~ 200 (328)
++.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+..
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~-~~G~~v~~~~r~~~ 40 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALA-ALGARVAIGDLDEA 40 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 367899999997 889999999985 67999999988754
No 493
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.03 E-value=1.3 Score=42.35 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=58.6
Q ss_pred EEEEEec-CHHHHHHHHHHHhcCC-------cEEEEEcCCchhH-HHHHHhhhhhhhhcCC-CCCccccccCCHHHHhhc
Q 020301 167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (328)
Q Consensus 167 tvgIiG~-G~IG~~vA~~l~~~fg-------~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (328)
+|+|+|. |.+|+.+|..|. ..+ .+|..+|+..... .+...-.+ .+.. ..........++.+.++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCC
Confidence 6999999 999999999874 322 4899999854321 11100000 0000 000011113567788999
Q ss_pred CCEEEEcCCCCh---hhh-ccc--cH-------HHHhcC-CCCcEEEEcCCCcccCHH
Q 020301 237 ADVISLHPVLDK---TTY-HLI--NK-------ERLATM-KKEAILVNCSRGPVIDEV 280 (328)
Q Consensus 237 aDiV~l~~plt~---~t~-~li--~~-------~~~~~m-k~ga~lIN~aRG~~vde~ 280 (328)
||+|+.+.-... +|+ .++ |. ..+... +|++++|.++ ..+|.-
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~ 134 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN 134 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence 999987754321 121 111 21 233444 5789999887 345443
No 494
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.01 E-value=2.8 Score=36.60 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=33.9
Q ss_pred ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT 201 (328)
Q Consensus 162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~ 201 (328)
.|.|+.+.+-|.|. ||+++.+.|+ .-|++|+++.|.+..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La-~aGA~ViAvaR~~a~ 43 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLA-KAGAQVIAVARNEAN 43 (245)
T ss_pred cccceEEEeecccccccHHHHHHHH-hcCCEEEEEecCHHH
Confidence 58899999999885 9999999984 779999999998754
No 495
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.98 E-value=2.9 Score=39.03 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=55.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH---Hh--hcCC
Q 020301 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VL--READ 238 (328)
Q Consensus 164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll--~~aD 238 (328)
.|.++.|.|.|.+|+.+++.+ +.+|.+|++.+++.... +....+ +....-.....+..+ .. ...|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la-~~~G~~V~~~~~s~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIA-KAMGAAVIAVDIKEEKL--ELAKEL-------GADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEcCCHHHH--HHHHHh-------CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 457899999999999999984 79999999988875432 111111 211110011112222 11 3468
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (328)
Q Consensus 239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a 272 (328)
+++.++.. +. .-++.+..++++..+|..+
T Consensus 235 ~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGT-QP----TFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCC-HH----HHHHHHHHhhcCCEEEEEC
Confidence 88776542 11 2345667788888888775
No 496
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=87.97 E-value=1 Score=43.33 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=27.3
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT 201 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~ 201 (328)
.++||+|+|+||+..++.+.+.-+.++.+ +|+....
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~ 42 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITT 42 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCH
Confidence 48999999999999999864334678776 5665444
No 497
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=87.97 E-value=2 Score=43.13 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=52.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh------------HHHHHHhhhhhhhhcCCCCCc---ccccc
Q 020301 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT------------RLEKFVTAYGQFLKANGEQPV---TWKRA 227 (328)
Q Consensus 163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~~ 227 (328)
-.|+++.|||.|.+|...|..| +..|.+|..|++.+.. ...+..+...+++++.|..-. .....
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l-~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADIL-ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence 4789999999999999999997 5789999999875421 000111111122333342211 00111
Q ss_pred CCHHHHhhcCCEEEEcCCCCh
Q 020301 228 SSMDEVLREADVISLHPVLDK 248 (328)
Q Consensus 228 ~~l~ell~~aDiV~l~~plt~ 248 (328)
..++++...+|.|+++.-..+
T Consensus 218 ~~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 218 ISLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred cCHHHHHhcCCEEEEEeCCCC
Confidence 255666678999999887654
No 498
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=87.94 E-value=9.2 Score=34.06 Aligned_cols=148 Identities=19% Similarity=0.066 Sum_probs=78.1
Q ss_pred CeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCC-C--CCH-HHHHHHhcCCccEEEecCCCCccHHHHHHhhcc---C
Q 020301 15 KYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKT-I--LSV-EDIIALIGDKCDGVIGQLTEDWGETLFAALSRA---G 86 (328)
Q Consensus 15 ~~~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~--~~~-e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l---~ 86 (328)
+|+|+++.+-+. ..+.+.|++.|+++...+.-+. + .+. ......+. .+|.++..+..-+ +.+++.+.+. .
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~d~iiftS~~av-~~~~~~~~~~~~~~ 78 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAAL-GADWVIFTSKNAV-EFLLSALKKKKLKW 78 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCC-CCCEEEEECHHHH-HHHHHHHHhcCcCC
Confidence 389999998654 3466788999988755432111 1 111 12223343 6898887653222 2233333200 0
Q ss_pred CceEEEccccCCccChhHHHhCCceEecCCCC-CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCC
Q 020301 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165 (328)
Q Consensus 87 ~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~-~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g 165 (328)
++-.....+|-. --++++++|+.+...|.. +....++. +. ...+.|
T Consensus 79 ~~~~~~~avG~~--Ta~~l~~~G~~~~~~~~~~~~~~l~~~----l~---------------------------~~~~~~ 125 (249)
T PRK05928 79 PKNKKYAAIGEK--TALALKKLGGKVVFVPEDGESSELLLE----LP---------------------------ELLLKG 125 (249)
T ss_pred CCCCEEEEECHH--HHHHHHHcCCCccccCCCCcChHHHHh----Ch---------------------------hhhcCC
Confidence 111122233321 134566788876554432 22222111 00 011568
Q ss_pred CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (328)
Q Consensus 166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~ 198 (328)
+++.|+....-...+++.| ...|.+|..+..+
T Consensus 126 ~~ili~~~~~~~~~l~~~L-~~~G~~v~~~~~Y 157 (249)
T PRK05928 126 KRVLYLRGNGGREVLGDTL-EERGAEVDECEVY 157 (249)
T ss_pred CEEEEECCCCCHHHHHHHH-HHCCCEEeEEEEE
Confidence 8899998888777899987 6788877654433
No 499
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.89 E-value=2.4 Score=40.90 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=25.7
Q ss_pred CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (328)
Q Consensus 166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~ 198 (328)
.+|+|+| .|.+|+++++.|...-.+++.++..+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 5899998 89999999999753335688877433
No 500
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.89 E-value=1.6 Score=46.87 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=68.2
Q ss_pred CEEEEEecCHHHHHH-HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (328)
Q Consensus 166 ~tvgIiG~G~IG~~v-A~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~ 244 (328)
+++.|+|+|.+|.+. |+.| +..|.+|.++|....+..++ ++..|..- .. ..-.+.+..+|+|+..-
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi~~---~~-g~~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGARF---FL-GHQEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCCEE---eC-CCCHHHcCCCCEEEECC
Confidence 369999999999998 9987 68999999999765432221 11222211 00 11235667899997653
Q ss_pred CCChhhh----------ccccHHHH-hc-CCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 020301 245 VLDKTTY----------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQN 289 (328)
Q Consensus 245 plt~~t~----------~li~~~~~-~~-mk~-ga~lIN~aRG~~vde~aL~~aL~~g 289 (328)
.-.+++. .++++-.| .. ++. ..+-|--+.|..=-..-+...|++.
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 2222211 23444333 23 332 3566666789988888888888764
Done!