RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020301
(328 letters)
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 304 bits (780), Expect = e-103
Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 20/312 (6%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
K +++ T P+P + + V ++++++I D ++ L E
Sbjct: 1 KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
+ + + K S ++G++++D++A GI VGN P +T TAE+A L L +
Sbjct: 57 RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115
Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
ARR E ++ +R + GW P VG L +T+G+ G G IG A A+ +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174
Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
+D ++ ++ E S+D +L + SL+ T +
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220
Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
NK + ++ + AI+VN +RG ++D +V L+ + G DVF EP + G ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280
Query: 315 AIVVPHIASASK 326
+ PHI SA+
Sbjct: 281 TFLFPHIGSAAT 292
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 302 bits (777), Expect = e-102
Identities = 116/316 (36%), Positives = 178/316 (56%), Gaps = 27/316 (8%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
K +V T+ +P I +L E + VE+ + + E ++ + + D ++ L+E
Sbjct: 2 KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
+ +F + + +N AVGY+N+D+ A K GI V NTP VLT+ TA+LA +L LA
Sbjct: 58 DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
AR +V+ D F+R+G W P F+G + G+T+G+IG GRIG A A+ +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174
Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
++YY + +E+ + A ++++LRE+D + L L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218
Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
YHLIN+ERL MKK AIL+N +RG V+D ALV+ LK+ + GLDVFE+EPY L
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278
Query: 311 EMKNAIVVPHIASASK 326
++ N ++ PHI SAS
Sbjct: 279 KLDNVVLTPHIGSASF 294
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 296 bits (760), Expect = 1e-99
Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 22/312 (7%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
+ + I + Q +E+ + T+L+ I + + + TE
Sbjct: 28 IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
+ L G K + ++VGY+++D+ AA GI V +TP VL++ AE+A L L A
Sbjct: 84 TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142
Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
RR EAD +R+G + GW P +G L G+ +G+ G GRIG A A GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201
Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
++ + + + Y ++D +L +D+ + +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245
Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
+ +R+A + + A+++N SRG +I++ AL+E L+ +F GLDVF +EP + P + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305
Query: 315 AIVVPHIASASK 326
+ PHI SA+
Sbjct: 306 IFLTPHIGSATH 317
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 293 bits (752), Expect = 1e-98
Identities = 94/317 (29%), Positives = 143/317 (45%), Gaps = 22/317 (6%)
Query: 12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
P +V T+ +P L DC VE + +++ + G++ L
Sbjct: 5 PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61
Query: 71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
++ + + A A K S M+VG +++ ++ K GI VG TP VLT+TTAELA SL
Sbjct: 62 SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120
Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
L RR+ EA E ++ G + W P G L TVG+IG GRIG A AR + F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179
Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
Y + + + S E+ ++D I + L T
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTPAT 224
Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGL 309
L NK+ MK+ A+ +N SRG V+++ L + L + GLDV EP L
Sbjct: 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPL 284
Query: 310 SEMKNAIVVPHIASASK 326
+KN +++PHI SA+
Sbjct: 285 LTLKNCVILPHIGSATH 301
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 288 bits (739), Expect = 5e-97
Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 30/311 (9%)
Query: 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
RV+ T+ +P + ++ L E+ E+ + L +++ + G+I + +
Sbjct: 2 RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57
Query: 77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
+ K + +VG ++VD+ AA + GI V +TPGVLTE TA+L +L LA AR
Sbjct: 58 EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
R+VE + R GL+ W P L +G L+G T+G++G GRIG A A+ F M ++Y+
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
R K P + S++E+L+EADV+SLH L T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
ERL MK+ AIL+N +RG ++D ALVE L+ +F GLDV + EP L + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272
Query: 316 IVVPHIASASK 326
++ PHI SA +
Sbjct: 273 VITPHIGSAGR 283
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 284 bits (730), Expect = 2e-95
Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 31/319 (9%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
++V T + + LL C + Q + L+ E+I+ D ++ + +
Sbjct: 2 LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
A + G++N DV+A G+ + P +LT TAELA L++
Sbjct: 58 DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
R + AD F+R+G + GW P F G L TVG +G G IG A A + G+ L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173
Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
++ L EQ + ++ + E+ +D I L L+ T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218
Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
N E LA ++ A+LVN RG V+DE A++ L++ + DVFE E + +
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278
Query: 307 PGLSEMKNAIVVPHIASAS 325
P L N + PHI SA
Sbjct: 279 PALLAHPNTLFTPHIGSAV 297
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 279 bits (717), Expect = 4e-93
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 25/302 (8%)
Query: 34 IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
+Q V + + + +I G + W L + L +
Sbjct: 23 FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
K F+ G++ +D++A N+ G+A N+ G T++LA L L+ R ++ R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
G + + + +G +G +G G I AR V G M L+YYD+
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
A E+ + +R S++E+ R +D +S+ K T+HLI++ A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
+ +VN +RGPVI + AL+ LK + GLDV E EP + L EMK+ + HI
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 AS 325
+
Sbjct: 308 VA 309
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 270 bits (692), Expect = 2e-89
Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 29/315 (9%)
Query: 11 NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
N K ++ +PM ++ ++++ V Q + A + V
Sbjct: 26 FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79
Query: 71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
L + VG + VD+ A + I V TPGVL + A+L +L
Sbjct: 80 GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137
Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
LA RR+ + D +R G + L +G+ KG+ +GV+G G+IG A A E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195
Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
++ Y++ R V W S ++ R++DV+++ T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236
Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
++++ L + E I+VN +RG V+DE AL+E LK + GLDVF +EP ++
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296
Query: 311 EMKNAIVVPHIASAS 325
N +++PH SA+
Sbjct: 297 TTPNTVLMPHQGSAT 311
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 268 bits (687), Expect = 8e-89
Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 31/316 (9%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
+ +V M + L ++ VEI S E++ +IG DG+I T
Sbjct: 2 RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
+ R K S + GY+N+D+ A K GI V G+L+E AE L +
Sbjct: 55 TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112
Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
R+I AD+F+R G ++ L G+ VG++G G IG A AR + F +
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171
Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
L Y+ ++ +EK + A R +DE+L ++D++ L L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
H+IN+ER+ ++ LVN RG ++DE A+ E +KQ + DVFE EP + L
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274
Query: 311 EMKNAIVVPHIASASK 326
++ PH A +
Sbjct: 275 YEWETVLTPHYAGLAL 290
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 264 bits (677), Expect = 2e-87
Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 29/311 (9%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
V+ PM ++ +++ ++ + T + D +AL + V+G
Sbjct: 23 AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
L AL + + S+ +VG + VD+ + G+ V NTP VLT+ A+LA L LA
Sbjct: 78 DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135
Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
RRI E D+++R G + + + G+ VG+IG GRIG A A E F + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192
Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
+ R +K + S+ E+ +D++ + L T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233
Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
N+E + + + +L+N RGP +DE LV L + + GLDVFE EP + L ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293
Query: 315 AIVVPHIASAS 325
+++PH+ S +
Sbjct: 294 VVLLPHVGSGT 304
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 252 bits (646), Expect = 2e-82
Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 29/321 (9%)
Query: 12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
+ V T + +L + V C S ++I + ++ G + T
Sbjct: 18 GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72
Query: 72 EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
+ + G++N+D+ +A GIAV N P E TA+
Sbjct: 73 ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130
Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
L RR + +R G + ++G+T+G+IG GR+G A A +
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189
Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
F N+++YD Y L E+ + +R S++ ++L +D ++LH L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234
Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
+ +HLIN + M++ A LVN +RG ++DE AL + LK+ + LDV E EP+
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294
Query: 308 G--LSEMKNAIVVPHIASASK 326
L + N I PH A S+
Sbjct: 295 QGPLKDAPNLICTPHAAWYSE 315
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 250 bits (641), Expect = 3e-82
Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 30/275 (10%)
Query: 53 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
+ + G V L A + R K + G +++ + + V
Sbjct: 19 KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75
Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
G + AE A +L LA +RI++ E M+ G Y + L++G+ V V+G
Sbjct: 76 AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131
Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
G IG+ +++ + + W+ +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170
Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
LREA L+K T L+ + LA M ++A+ VN R V+D ++ LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230
Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
DV+ + N + P +A
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY 265
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 246 bits (630), Expect = 1e-80
Identities = 100/313 (31%), Positives = 161/313 (51%), Gaps = 29/313 (9%)
Query: 15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
+ +V+ P+ + I +L + V + + ++ L+ D + +I +
Sbjct: 3 RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56
Query: 75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
+ + + K + VG +N+DV AA + GI V N P + + AELA L +
Sbjct: 57 TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114
Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
AR+I AD MR G W +G L+G+T+G+IG GRIG A++ MN++
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170
Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
YD Y E+ + ++ +L+E+DV+++H L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214
Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
N+ERL MKK AIL+N SRGPV+D ALV+ LK+ + GLDVFE+EP K L++
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274
Query: 314 NAIVVPHIASASK 326
N ++ PHI +++
Sbjct: 275 NVVLTPHIGASTV 287
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 244 bits (624), Expect = 2e-79
Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 39/290 (13%)
Query: 53 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
+ + + + + + E L + + K +VG++++D++ K GI V
Sbjct: 34 KVPENELKK-AELISVFVYDKLTEELLSKM--PRLKLIHTRSVGFDHIDLDYCKKKGILV 90
Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
+ P E+ AE ++ L +R+ ++ ++ + + + L T+GVIG
Sbjct: 91 THIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNF--SQDSEILARELNRLTLGVIG 148
Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
GRIGS A F M ++ YD+ + L++ Y +S+DE
Sbjct: 149 TGRIGSRVAMYG-LAFGMKVLCYDVVKREDLKEKGCVY-----------------TSLDE 190
Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
+L+E+DVISLH K T+H+IN+ER++ MK L+N +RG V+D AL ++
Sbjct: 191 LLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS 250
Query: 293 RVGLDVFEDEP----------------YMKPGLSEMKNAIVVPHIASASK 326
+GLDVFEDE L+ N I+ PHIA +
Sbjct: 251 GLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTD 300
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 242 bits (619), Expect = 1e-78
Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 36/288 (12%)
Query: 53 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
+ +AL DGV+ D+ AL+ G S VG +N+D+ A + G +
Sbjct: 38 PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96
Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
N P AE AA + R+ DE + +G ++ Q VGV+G
Sbjct: 97 TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153
Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
G IG + ++M EGF +I YD+++ LEK S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195
Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
+ ++ADVISLH H+IN E +A MK++ ++VN SRGP++D A++ L +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255
Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASK 326
+DV+E E + L N +V P A +
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT 303
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 242 bits (619), Expect = 9e-78
Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 23/300 (7%)
Query: 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
+ +E + + T K + D D VI Q W L
Sbjct: 59 LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
K +G ++VD+ +A + V + + AE + L+ R + + E+ R
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
G ++ + L+ VG + AGRIG A R + F ++L Y D ++
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
L + E+ + ++ +++ DV++L+ L T H+IN E L K+ A
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
+VN +RG + D A+ L+ + DV+ +P K M + PHI+ +
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 239 bits (611), Expect = 2e-77
Identities = 62/295 (21%), Positives = 115/295 (38%), Gaps = 37/295 (12%)
Query: 47 KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
L+ ++ + D VI + + + G K G +++D A
Sbjct: 31 PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89
Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
+ G + P AELA + ++ R + + ++
Sbjct: 90 ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
TVGV+G GRIG A++ G +I D+++ +E + T
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
S+DEVL ++D+I++H K ++ ++ L MK AILVNC+RG ++D A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASK 326
+ + G DV + E P + + ++ PH+ S +
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTD 303
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 236 bits (604), Expect = 8e-77
Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 30/289 (10%)
Query: 40 VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
+++ V +I + D D D + G K ++ G
Sbjct: 1 LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60
Query: 98 NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
+++DVN + + N + + AE A +L LA A+ I+E +E M+AG++
Sbjct: 61 DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116
Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
LL G+ +G++G G IG A + + F M +I Y +
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160
Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
S ++ R++D + + L T ++N LA +K +VN +R V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214
Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
+ ++ LK+ DV+ +EP + + ++NAI+ PH+A
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMS 261
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 230 bits (589), Expect = 4e-74
Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 36/284 (12%)
Query: 53 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
E+ + DG+ T + +F + G K + VG +N+D+ A +YGI +
Sbjct: 36 ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94
Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
N P AE A + +L R + + ++AG Y+ F+G L QTVGV+G
Sbjct: 95 SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152
Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
G IG ++ +GF +I YD Y Y S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193
Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
+ +++DVI LH + H+IN+ MK AI++N +R +ID A++ +LK +
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253
Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIA 322
VG+D +E E L M N ++ PHIA
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 297
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 230 bits (588), Expect = 1e-73
Identities = 63/294 (21%), Positives = 117/294 (39%), Gaps = 32/294 (10%)
Query: 41 EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
+ ++ I D +I +T + K
Sbjct: 42 QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
+G +++D+ AA G+ V G + AE L R V + G ++
Sbjct: 95 IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
+ L+G+T+G +GAGRIG + + F NL+Y+D Q +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
E+ K ++E+L + DVI ++ L + T + NKE + +KK ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASK 326
+++ A+V+ ++ + DV++ +P K P M N + PH + +
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTI 311
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 227 bits (582), Expect = 8e-73
Identities = 80/318 (25%), Positives = 130/318 (40%), Gaps = 51/318 (16%)
Query: 29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
+LL + + +V T+ V + A + D + ++ ++T L L
Sbjct: 20 CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70
Query: 83 -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
S+ G ++D+ A G+ V G AEL +L +AA RR
Sbjct: 71 KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125
Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
I + ++ G PN +G +LKGQT+G+ G G+IG A F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184
Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
N++ +G+ + + A S D + ++DV+S+H L+ T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229
Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
+I L MK A+ VN SR +++E +V L + +DVFE EP + G
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHT 288
Query: 309 LSEMKNAIVVPHIASASK 326
L M+N I PHI +
Sbjct: 289 LLRMENCICTPHIGYVER 306
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 222 bits (569), Expect = 5e-71
Identities = 94/305 (30%), Positives = 144/305 (47%), Gaps = 46/305 (15%)
Query: 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
+L + +V K LS E++IA + D C+G+I ++T + + AA
Sbjct: 40 RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTA---DVINAAEKLQ 91
Query: 82 -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
+ RAG G +NVD+ AA + GI V NTP + + AEL + + AR+I +
Sbjct: 92 VVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQ 143
Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
A M+ G W F+G L G+T+G++G GRIG A M + F M I YD +
Sbjct: 144 ATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS 199
Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
+ ++G V ++E+ D I++H L +T L+N A
Sbjct: 200 ---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFA 243
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
KK +VNC+RG ++DE AL+ L+ LDVF +EP L + +N I PH
Sbjct: 244 QCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPH 303
Query: 321 IASAS 325
+ AS
Sbjct: 304 LG-AS 307
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 218 bits (557), Expect = 1e-69
Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 50/309 (16%)
Query: 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
I L E+ +V+ +S E+++ +IG+ D ++ ++T+ + +
Sbjct: 19 IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70
Query: 82 -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
++RAG +G +N+D A K I V PG T++ EL L +AAAR++
Sbjct: 71 IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122
Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
+ ++G + G L G+T+G++G GRIG+ + M ++ YD+
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176
Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
+ S++E+L+ +DVISLH + K +I+ +
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
MK I+VN SR ++ AL++++K+ ++ DVF +EP + L + + IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280
Query: 318 VPHIASASK 326
HI + +K
Sbjct: 281 TTHIGAQTK 289
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 221 bits (565), Expect = 3e-68
Identities = 85/294 (28%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 33 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
+ V + ++A + + D ++ + + AA + K +
Sbjct: 20 ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72
Query: 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
VG +NVDV+AA G+ V N P + AE A +L LAA+R+I AD +R
Sbjct: 73 AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129
Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
W + F G + G+TVGV+G GRIG A+ + F ++ YD +V+
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
G + ++ D++L AD IS+H T LI+KE LA K I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
RG ++DE AL + + + GLDVF EP L E+ +V PH+ +++
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTA 286
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 210 bits (537), Expect = 7e-66
Identities = 75/309 (24%), Positives = 124/309 (40%), Gaps = 52/309 (16%)
Query: 40 VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
E+ T + I D D +I +T+ E + A + AG
Sbjct: 39 HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92
Query: 89 AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
VG +++D++ N+ G I+V G + AE L R V A E +
Sbjct: 93 ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146
Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
W ++G+T+ IGAGRIG +V F + Y YQA +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202
Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
E+ V +R +++E++ +AD+++++ L T LINKE L+ KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249
Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
A LVN +RG + + L+ + G DV+ +P K P +M+N +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308
Query: 318 VPHIASASK 326
PH + +
Sbjct: 309 TPHYSGTTL 317
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 211 bits (539), Expect = 2e-65
Identities = 89/299 (29%), Positives = 129/299 (43%), Gaps = 51/299 (17%)
Query: 41 EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
T L D+I I + QLTE+ +FAA +
Sbjct: 38 TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88
Query: 91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
VG N V++ AA K GI V N P T + AEL + RRI AG
Sbjct: 89 ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142
Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
GW ++G+T+G++G G IGS + E M + YYD +L+
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193
Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
N + A+S+DE+L+ +DV+SLH K+T LI + +L MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242
Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHI-AS 323
+RG +D AL + L++ + +DVF EP L ++N I+ PHI S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS 301
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 210 bits (537), Expect = 2e-65
Identities = 76/296 (25%), Positives = 117/296 (39%), Gaps = 51/296 (17%)
Query: 44 TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
K L E + I D + LTED + A
Sbjct: 30 EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77
Query: 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
+G N VD++AA K GI V N P T + AEL L R + EA+ G
Sbjct: 78 -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133
Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
+G+ +G+IG G IG+ + E M + +YD+ L
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183
Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
N Q + ++L +DV+SLH + +T +++ + ++ MK ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234
Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHI-AS 323
G V+D AL + L + +DVF EP L+E N ++ PHI S
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGS 290
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 194 bits (494), Expect = 5e-60
Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 38/286 (13%)
Query: 48 TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
T + A D+ + + G L L+R K ++ G + + + A
Sbjct: 26 TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80
Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
G+ V NT G+ + +E + L+ R A R + L G
Sbjct: 81 QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
Q + + G G+IG + A M++I + + F
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
++ + L A+ I L TT+HL + E K++ +L+N RGP +D AL+
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
L + + LDV E EP L + ++ PHI+
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQI 281
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 194 bits (496), Expect = 1e-59
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 46/236 (19%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
+G +++D++ + GIA + PG + LA A
Sbjct: 67 IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
G L +T GV+GAG++G ++ G ++ D + R
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
+ V S++ +L EADVISLH + T HL+++ RLA ++ LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
SRG V+D AL L+ V LDV+E EP P L + I PHIA S
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIAGYSL 260
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 190 bits (485), Expect = 5e-58
Identities = 60/232 (25%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
G ++VD + GI PG E S L A R
Sbjct: 70 AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
G L+ +T+G++G G +GS + E + + D +A R
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
+ ++DE+++EADV++ H T HL ++ + +K AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
RGPV+D AL+ L V LDV+E EP + L E + I HIA
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA 259
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 120 bits (302), Expect = 1e-31
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 35/224 (15%)
Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
+ N G+ +E L+ R++ E + L W LKG+T+
Sbjct: 89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143
Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
++G G IG A + F M ++ F Y
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186
Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
+++++L +AD ++S+ P + T+HL R K AIL N RG I+E L+ L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
+ LDVFE EP L N I+ PH ++ S
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS 284
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 113 bits (285), Expect = 2e-29
Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 41/251 (16%)
Query: 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
KA + G + + + + P + E A S L RR +
Sbjct: 61 KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120
Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
L W P + +VG++GAG +G+ A + + L +
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173
Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
+ G + L + +I+L P T +IN E L
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
+ A ++N +RG + E L+ L + LDVF EP L +
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272
Query: 315 AIVVPHIASAS 325
+ PHIA+ +
Sbjct: 273 VAMTPHIAAVT 283
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 65.4 bits (159), Expect = 3e-12
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
+ G V V+G GR+G + AR + + G +P
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
+ + LR+ DV ++ LA M +++ + P +
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254
Query: 283 VEHLKQNPMFRVGL 296
E + GL
Sbjct: 255 AEKRGIKALLVPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 72/241 (29%)
Query: 109 GIAVGNTPGVLTETTAELAAS-LSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLK 164
G A + P T AEL L ++ VE + G +D L F L+
Sbjct: 47 GFAADDEP----TTPAELVGKFLGYVSSL--VEPSK---VGQFDQVLNLCLTEFENCYLE 97
Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI--YYD----------------LYQATRLEKF 206
G + + A + ++ LI Y L++A
Sbjct: 98 GNDIHALAAKLLQENDTTLVK---TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN- 153
Query: 207 VTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
F G Q + +E LR+ L+ TYH++ + +
Sbjct: 154 AQLVAIF----GGQGNTDDY-----FEE-LRD-----LY-----QTYHVLVGDLIKFS-- 191
Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE--DEPYMKPGLSEMKNAIV-VPHI 321
L R + +F GL++ E + P P + + + P I
Sbjct: 192 AETLSELIRTTL----------DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 322 A 322
Sbjct: 242 G 242
Score = 40.8 bits (95), Expect = 6e-04
Identities = 55/333 (16%), Positives = 99/333 (29%), Gaps = 115/333 (34%)
Query: 1 MAK------PVSIEVWNPNGKYR----------VVSTKPM--------PGTRWI----NL 32
M + +VWN + +V P+ + I +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 33 LIEQDCRVEICTQKKTILSV-EDIIALI--GDKCDGVIGQLTEDWGETLFA--AL---SR 84
+I + +K + E + +K G L+ T F AL +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-----GLLSA----TQFTQPALTLMEK 1741
Query: 85 AGGKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA---SLSLAAARRIVE 140
A AF ++ + G D A G ++G E A LA+ +S+ + +V
Sbjct: 1742 A---AFEDLKSKGLIPADATFA---GHSLG-------EYAA-LASLADVMSIESLVEVV- 1786
Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
F R G + V G++ + A G + F + Y
Sbjct: 1787 ---FYR-----GMTMQVAVPRDELGRSNYGMIAINPGR-----VAASFSQEALQY----- 1828
Query: 201 TRLEKFVTAYGQFLK-AN----GEQPVTWKRASSMDEVLREADVISLHPV-LDKTTYHLI 254
+E+ G ++ N +Q V + LD T
Sbjct: 1829 -VVERVGKRTGWLVEIVNYNVENQQ-Y----------------VAAGDLRALDTVT---- 1866
Query: 255 NKERLATMKKEAI-LVNCSRGPVIDEVALVEHL 286
L +K + I ++ + ++EV HL
Sbjct: 1867 --NVLNFIKLQKIDIIELQKSLSLEEVE--GHL 1895
Score = 36.6 bits (84), Expect = 0.012
Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 56/162 (34%)
Query: 133 AAARRIVE-ADEFMRAGLYDGWLPNLFVGNLLKGQTV--GVIGAGRIGSAYARMMVEGFK 189
AA+ + AD + G+ V N T+ G RI Y+ M+
Sbjct: 1640 KAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI----- 1692
Query: 190 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VLD 247
E V + K E ++E +L
Sbjct: 1693 -------------FETIVDGKLKTEKIFKE----------INEHST--SYTFRSEKGLLS 1727
Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289
T + T + A+ + + E A E LK
Sbjct: 1728 ATQF---------T--QPALTL------M--EKAAFEDLKSK 1750
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 37.5 bits (87), Expect = 0.004
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 20/108 (18%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
+ G V V+G GR G AR N+ + L + + G P
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFA-ALGANVKVGAR-SSAHLAR--------ITEMGLVPF 204
Query: 223 TWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILV 269
+ E +++ D I+ P + ++N+ L++M + +++
Sbjct: 205 H---TDELKEHVKDIDICINTIPSM------ILNQTVLSSMTPKTLIL 243
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 36.5 bits (85), Expect = 0.009
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWK 225
+ VIG+ + E + I + ++LEK ++ + K
Sbjct: 5 ICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMN----------IKPK 54
Query: 226 RASSMDEVLREADV 239
+ ++ E+L +
Sbjct: 55 KYNNWWEMLEKEKP 68
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 34.8 bits (81), Expect = 0.029
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 229 SMDEVLREADVISL--------HPVLDKTTYHL---INKERLATMKKEAIL-----VNCS 272
SMDE + +DV+ L + + Y + ER MK+ AI+ VN
Sbjct: 196 SMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVN-- 253
Query: 273 RGPVID-EVA 281
RG ID +
Sbjct: 254 RGVEIDDSLV 263
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 34.3 bits (78), Expect = 0.041
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 29/142 (20%)
Query: 161 NLLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 218
N + +TV ++GA G++G+ R + + L ++ R L+ G
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHH--LAAIEIAPEGR---------DRLQGMG 55
Query: 219 EQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS------ 272
D + EADV+ L L + ++ + ++ I++
Sbjct: 56 IPLT------DGDGWIDEADVVVL--ALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYA 107
Query: 273 --RGPVIDEVALVEHLKQNPMF 292
D + H P+F
Sbjct: 108 GVMPERADITYFIGHPCHPPLF 129
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 33.8 bits (78), Expect = 0.060
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 168 VGVIGAGRIGS-AYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+G+IG G I AY ++ + + + + + + EK + Y
Sbjct: 9 MGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKV-KREKICSDYR------------IM 55
Query: 226 RASSMDEVLREADVISLH-PVLDKTTYH 252
S++ + ++ D I LH T H
Sbjct: 56 PFDSIESLAKKCDCIFLHSS----TETH 79
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 33.9 bits (78), Expect = 0.061
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKM-----NLIYYDLYQATRLEKFVTAYGQFLKANGEQ 220
+ + +IG G + F ++ YD K + ++
Sbjct: 130 RKMALIGNGAQ----SEFQALAFHKHLGIEEIVAYDTDPL-ATAKLIANLKEYS------ 178
Query: 221 PVTWKRASSMDEVLREADVIS 241
+T +RASS+ E ++ D+I+
Sbjct: 179 GLTIRRASSVAEAVKGVDIIT 199
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 33.3 bits (75), Expect = 0.090
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 168 VGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGE 219
V V G G + + G ++ ++ +A R K + E
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 220 QPVTWKRASS-MDEVLREADVI 240
K + + + ADV+
Sbjct: 65 VKSRPKVITKDPEIAISGADVV 86
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 32.7 bits (75), Expect = 0.13
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 20/88 (22%)
Query: 168 VGVIGAGRIGS-AYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+GV+G G I A+ ++ L + +A + ++
Sbjct: 8 IGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRA-KALPICESWRI------------P 54
Query: 226 RASSMDEVLREADVISLH-PVLDKTTYH 252
A S+ + D + +H T H
Sbjct: 55 YADSLSSLAASCDAVFVHSS----TASH 78
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 32.8 bits (74), Expect = 0.13
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 164 KGQTVGVIGAGRIGSAYARMMVE 186
+G + V+G G +G A + +
Sbjct: 18 QGMKIAVLGTGTVGRTMAGALAD 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.22
Identities = 49/377 (12%), Positives = 107/377 (28%), Gaps = 148/377 (39%)
Query: 8 EVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDK---CD 64
V N + NL C++ + T+ K V D ++ D
Sbjct: 252 NVQNA----KAW--NAF------NL----SCKILLTTRFK---QVTDFLSAATTTHISLD 292
Query: 65 GVIGQLTEDWGETLFA--------ALSRAG-----------GKAFSNMAVGYNNVDVNAA 105
LT D ++L L R ++ + ++N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV---GNL 162
+K LT + +SL+ ++E E R ++D L V
Sbjct: 353 DK-----------LTTI---IESSLN------VLEPAE-YRK-MFD----RLSVFPPSAH 386
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATRLE-------- 204
+ + +I I S ++ + K +L+ +Y +++
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 205 -KFVTAYGQFLKA---NGEQPVTWKRASSMDEVLREADVISLHPVLDK-----TTYHLIN 255
V Y K + P P LD+ +HL N
Sbjct: 447 RSIVDHY-NIPKTFDSDDLIP----------------------PYLDQYFYSHIGHHLKN 483
Query: 256 K---ERLATMKKEAILVN---------------CSRGPVIDEVALVEHLKQNPMFRVGLD 297
ER+ + + ++ + G +++ + ++ K
Sbjct: 484 IEHPERMTLFRM--VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-------- 533
Query: 298 VFEDEPYMKPGLSEMKN 314
+ +++P + ++ + +
Sbjct: 534 ICDNDPKYERLVNAILD 550
Score = 31.4 bits (70), Expect = 0.50
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPGLS--EMKNAIVVPHIASASKVI 328
++ + F D + + K LS E+ + I+ S + +
Sbjct: 21 ILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Score = 30.6 bits (68), Expect = 0.75
Identities = 47/341 (13%), Positives = 97/341 (28%), Gaps = 89/341 (26%)
Query: 14 GK----------YRVVSTKPMPGTRWINL--------LIEQDCRVEICTQ-KKTILSVED 54
GK Y+V W+NL ++E ++ Q S D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSD 218
Query: 55 IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV-DVNAANKYGIAVG 113
+ I + + +L L + K + N + NV + A N + +
Sbjct: 219 HSSNIKLRIHSIQAELRR-----LLKS------KPYENCLLVLLNVQNAKAWNAFNL--- 264
Query: 114 NTPG--VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL-- 162
+L TT + L+AA + + L + +L +L
Sbjct: 265 ---SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 163 --LKG--QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 218
L + + +I + + +L + + L+
Sbjct: 321 EVLTTNPRRLSIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 219 EQPVTWKRASSMDEVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
+ + + + V I +L + +I + + + K L S
Sbjct: 371 YRKMFDRLS-----VFPP-SAHIPTI-LLSLIWFDVIKSDVMVVVNK---LHKYS----- 415
Query: 278 DEVALVEHLKQNPMFRVGL-DVFEDEPYMKPGLSEMKNAIV 317
LVE KQ + + ++ + + +IV
Sbjct: 416 ----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Score = 29.1 bits (64), Expect = 2.9
Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 77/207 (37%)
Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW---LPNL----- 157
+ I P + E +L +L R IV+ + +D P L
Sbjct: 424 STISI-----PSIYLELKVKLENEYALH--RSIVDHYNIPKT--FDSDDLIPPYLDQYFY 474
Query: 158 -FVGNLLKGQTVGVIGAGRIGSAYARM--MVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
+G+ LK + F+M ++ D +F+ Q +
Sbjct: 475 SHIGHHLKN---------------IEHPERMTLFRM--VFLDF-------RFL---EQKI 507
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY--HLINKERLATMKKEAIL---- 268
+ + W + S+ L Y ++ + + AIL
Sbjct: 508 RHDS---TAWNASGSILNTL-----------QQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 269 ---VNCSRGPVID--EVALVEHLKQNP 290
N D +AL
Sbjct: 554 KIEENLICSKYTDLLRIAL-----MAE 575
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 30.9 bits (71), Expect = 0.26
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 21/93 (22%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQ 220
G + ++G G + S A +K+ + ++ EK+ +
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----------EYE 67
Query: 221 PVTWKRASSMDEVLREADVI-----SLHPVLDK 248
V + +D +++ DVI S P++++
Sbjct: 68 YVLI---NDIDSLIKNNDVIITATSSKTPIVEE 97
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 31.7 bits (71), Expect = 0.28
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY 194
+ +G G + + + + +++ I
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYIL 31
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 31.5 bits (72), Expect = 0.29
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTW 224
+ + ++GAG ++ + E F + ++ + EKF ++
Sbjct: 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKE-NAEKFADTVQGEVRV-------- 186
Query: 225 KRASSMDEVLREADVI-----SLHPVLD 247
SS+ E + ADVI + P+L
Sbjct: 187 --CSSVQEAVAGADVIITVTLATEPILF 212
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic
structure 2 function project, S2F, unknown function;
HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP:
d.58.4.7
Length = 101
Score = 30.1 bits (68), Expect = 0.32
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 131 SLAAARRIVEADEFMRAGLYDGW 153
+L AA+ D ++ AG+Y
Sbjct: 70 NLQAAKDWAAQDPYVEAGVYADV 92
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 31.1 bits (71), Expect = 0.46
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 168 VGVIGAGRIGSAYARMMVEGFK-MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
G++G G IGS + R + + ++ D+ R + + Y + K
Sbjct: 26 AGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAG-RAQAALDKYA----------IEAK 74
Query: 226 RASSMDEVLREADV 239
+ +++ + DV
Sbjct: 75 DYNDYHDLINDKDV 88
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.1 bits (70), Expect = 0.47
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
V ++GAG IG A A + + F + + + ++++F T + A+
Sbjct: 19 VLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLK--VDASNFD------- 69
Query: 228 SSMDEVLREAD-VISLHP 244
+ EV++E + VI P
Sbjct: 70 -KLVEVMKEFELVIGALP 86
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 31.0 bits (70), Expect = 0.49
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
+G IG G SA A + + +++ YD A G V+
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG----------VSC-- 73
Query: 227 ASSMDEVLREADVI 240
+S+ EV E DVI
Sbjct: 74 KASVAEVAGECDVI 87
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.8 bits (69), Expect = 0.56
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%)
Query: 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGE-QP 221
+T V+G G G A+A + G + D + ++ + A G L
Sbjct: 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 64
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
+T S + +++ADVI + +H +A+ E L+ + G +
Sbjct: 65 LT----SDIGLAVKDADVILIVV---PAIHHASIAANIASYISEGQLIILNPGATGGALE 117
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMK 306
+ L++N V + +
Sbjct: 118 FRKILRENGAPEVTIGETSSMLFTC 142
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 30.8 bits (70), Expect = 0.58
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 168 VGVIGAGRIGSAYARMMVEGFK-MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+GVIG G IG + + ++ D+ Q +K V Y +
Sbjct: 5 IGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQE-AAQKVVEQYQ----------LNAT 53
Query: 226 RASSMDEVLREADV 239
+ D +L + +V
Sbjct: 54 VYPNDDSLLADENV 67
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 30.7 bits (70), Expect = 0.64
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGE 219
+ +VG IGAG++ A A+ + ++ + G
Sbjct: 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV------- 72
Query: 220 QPVTWKRASSMDEVLREADVISL 242
K E ++ +DV+ L
Sbjct: 73 -----KLTPHNKETVQHSDVLFL 90
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 30.3 bits (69), Expect = 0.67
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 21 TKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW----G 75
T P PG + L ++ ++ + + K + L D +G+ +
Sbjct: 109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRRKPAP 168
Query: 76 ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
+ + G + +G + +D+ A +
Sbjct: 169 DMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDE 205
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 30.4 bits (69), Expect = 0.71
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 166 QTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPV 222
V ++G+G +G ++A GF++ L YD+ T + + + L+ +G
Sbjct: 7 GDVLIVGSGLVGRSWAMLFASGGFRVKL--YDIEPRQITGALENIRKEMKSLQQSGSLKG 64
Query: 223 TWKR---------ASSMDEVLREADVI 240
+ +++ E + I
Sbjct: 65 SLSAEEQLSLISSCTNLAEAVEGVVHI 91
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 30.4 bits (69), Expect = 0.74
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 168 VGVIGAGRIGSAYARMM--VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
V IG GR A E K+ Y + + EKF Y
Sbjct: 8 VAAIGLGRWAYVMADAYTKSEKLKLVTC-YSRTED-KREKFGKRYN------------CA 53
Query: 226 RASSMDEVLREADV 239
++M+ +L DV
Sbjct: 54 GDATMEALLAREDV 67
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 30.3 bits (69), Expect = 0.84
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
+GVIG GRIG+ +A + L D+ + RL + G K
Sbjct: 5 IGVIGLGRIGTIHAENLKMIDDAILYAISDVRED-RLREMKEKLG-----------VEKA 52
Query: 227 ASSMDEVLREADV 239
E++ + +V
Sbjct: 53 YKDPHELIEDPNV 65
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 0.85
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 168 VGVIGAGRIGSAYARM---MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW 224
++G GRI + + + ++ + D+ A L+ V G
Sbjct: 16 FALVGCGRIANNHFGALEKHADRAELIDV-CDIDPA-ALKAAVERTG------------A 61
Query: 225 KRASSMDEVLREADV 239
+ +S+ ++L + D
Sbjct: 62 RGHASLTDMLAQTDA 76
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 30.4 bits (69), Expect = 0.87
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 168 VGVIGAGRIGSAYAR 182
+ + GAGRIG +A
Sbjct: 7 IALFGAGRIGHVHAA 21
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.8 bits (66), Expect = 0.94
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVE 186
+G + + G G +G A
Sbjct: 17 FQGMEITIFGKGNMGQAIGHNFEI 40
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 30.2 bits (67), Expect = 0.99
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPV 222
G+ V ++G+G + + +N+ A L K + L +
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDS-- 80
Query: 223 TWKRASSMDEVLREAD-VISLHP 244
++D+VL + D VISL P
Sbjct: 81 ------ALDKVLADNDVVISLIP 97
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 29.8 bits (68), Expect = 1.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 161 NLLKGQTVGVIGAGRIGSAYARMMVE 186
N + + + ++GAG IG A + +
Sbjct: 1 NAMARKKITLVGAGNIGGTLAHLALI 26
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 30.0 bits (68), Expect = 1.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 168 VGVIGAGRIGSAYAR 182
+IG GR+G +AR
Sbjct: 11 AAIIGLGRLGERHAR 25
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVE 186
+++ + + VIG+G+IG A ++ +
Sbjct: 1 MIERRKIAVIGSGQIGGNIAYIVGK 25
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 168 VGVIGAGRIGSAYAR 182
+ +IGAGR G Y R
Sbjct: 13 LALIGAGRWGKNYIR 27
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186
A L D + NL + + V+G G +G A A ++
Sbjct: 1 AALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILM 40
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 29.8 bits (67), Expect = 1.3
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 162 LLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ 220
L+ G+ V + G G +G A M +G ++++ D A L+ + +
Sbjct: 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINA--LQAMMEGF---------- 318
Query: 221 PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
+++E + +AD++ V +I E + MK AIL N
Sbjct: 319 -----DVVTVEEAIGDADIV----VTATGNKDIIMLEHIKAMKDHAILGN 359
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 29.4 bits (67), Expect = 1.4
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
+ +G IG G +G A M+ + +I DL A L+ YG L
Sbjct: 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA-NLKNASEKYG--LTT------ 53
Query: 223 TWKRASSMDEVLREADVI 240
+ +EV + AD++
Sbjct: 54 ----TTDNNEVAKNADIL 67
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 29.4 bits (67), Expect = 1.4
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQ 220
+ + IG G + ++ G+ N I + +L+ F G
Sbjct: 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD-KLDFFKEKCG--------- 50
Query: 221 PVTWKRASSMDEVLREADVISL 242
V + ADV+ L
Sbjct: 51 -VHT--TQDNRQGALNADVVVL 69
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVE 186
+K + V VIGAG G+ A ++ +
Sbjct: 6 IKRKKVSVIGAGFTGATTAFLLAQ 29
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 161 NLLKGQTVGVIGAGRIGSAYARMMV 185
N KG V +IG G +GS+YA +V
Sbjct: 2 NKFKGNKVVLIGNGAVGSSYAFSLV 26
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 29.0 bits (66), Expect = 1.8
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 17/68 (25%)
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVI------------SLHPVLDKTTYHLINKERL 259
L G + W SS++EV+ E D++ S + + K + ++ L
Sbjct: 200 DMLDEKG---IAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANV-KAQF-VLRASDL 254
Query: 260 ATMKKEAI 267
K
Sbjct: 255 HNAKANMK 262
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 29.1 bits (66), Expect = 1.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 164 KGQTVGVIGAGRIGSAYARMMVE 186
+ + V +IG+G IG +
Sbjct: 8 RRKKVAMIGSGMIGGTMGYLCAL 30
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTW 224
G IG G + F + + YD+ + +KFV + + G
Sbjct: 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREK-AAKKFV----SYCEDRGISASV- 179
Query: 225 KRASSMDEVLREADVIS 241
E DV+
Sbjct: 180 ----QPAEEASRCDVLV 192
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 29.0 bits (66), Expect = 2.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
V VIGAG +G+ A +
Sbjct: 3 VTVIGAGNVGATVAECVAR 21
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 29.1 bits (66), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE 186
F G++ + VGV+G G++G RM+VE
Sbjct: 17 FQGHMWNSRKVGVLGGGQLG----RMLVE 41
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 29.0 bits (66), Expect = 2.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 161 NLLKGQTVGVIGAGRIGSAYARMMVE 186
++ + + +IGAG+IGS A ++ +
Sbjct: 10 TVIMRKKISIIGAGQIGSTIALLLGQ 35
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta
barrel, alternative splicing, hypusine, protein
biosynthesis; 2.30A {Arabidopsis thaliana}
Length = 167
Score = 28.5 bits (63), Expect = 2.1
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 3 KPVSIEVWNPNGKYRVVSTKPMPGTR 28
K + + V + G+ ++ + K + G +
Sbjct: 142 KDIVVSVMSSMGEEQICAVKEVGGGK 167
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 29.0 bits (65), Expect = 2.2
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221
L+ G+ V + G G +G A ++G + ++ ++ + +
Sbjct: 254 LISGKIVVICGYGDVGKGCA-SSMKGLGARVYITEIDPICAIQAVMEGF----------- 301
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
++DE++ + D + +I E L MK A++ N
Sbjct: 302 ----NVVTLDEIVDKGDFF----ITCTGNVDVIKLEHLLKMKNNAVVGN 342
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.5 bits (63), Expect = 2.2
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 167 TVGVIGAGRIGSAYAR 182
V + G G G +
Sbjct: 21 VVCIFGTGDFGKSLGL 36
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 28.6 bits (65), Expect = 2.2
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
+G+IG G++ SA + + + LI R ++ + + A
Sbjct: 6 IGIIGVGKMASAIIKGLKQT-PHELIISGSSLE-RSKEIAEQLA----------LPY--A 51
Query: 228 SSMDEVLREADVISL 242
S +++ + D++ L
Sbjct: 52 MSHQDLIDQVDLVIL 66
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 29.0 bits (66), Expect = 2.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 161 NLLKGQTVGVIGAGRIGSAYARMMVE 186
+ + +IG+G IG A +
Sbjct: 3 GSMARNKIALIGSGMIGGTLAHLAGL 28
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 28.6 bits (65), Expect = 2.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+ VIGAG +G+ A + E
Sbjct: 3 ITVIGAGNVGATTAFRLAE 21
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 28.4 bits (64), Expect = 2.6
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 13 NGKYRVVSTKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIG--DKCDGVIGQ 69
+ + G ++ L E + + I + K + I D +IG
Sbjct: 94 EKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFDSIIGS 152
Query: 70 LTEDWG------ETLFAALSRAGGKAFSNMA-VGYNNVDVNAANKYG---IAVG 113
D G E + AAL+ + + +G + D+ +A + G I G
Sbjct: 153 --GDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLPIKYG 204
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 28.6 bits (65), Expect = 2.6
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVE 186
+ + ++G+G IG A ++V+
Sbjct: 1 MAPKAKIVLVGSGMIGGVMATLIVQ 25
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 226 RASSMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 270
++D+ AD++ TT +I + + MK I+ N
Sbjct: 292 EVVTLDDAASTADIVV-------TTTGNKDVITIDHMRKMKDMCIVGN 332
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.0 bits (63), Expect = 2.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVE 186
+K + VIG GR G + + +
Sbjct: 4 IKNKQFAVIGLGRFGGSIVKELHR 27
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.7
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 27/97 (27%)
Query: 72 EDWGETLFAALSRAG---GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128
E W L + G G M NN+ K G V T + E+A
Sbjct: 657 ESWANQLTVCGAIIGWTRGTGL--M--SANNIIAEGIEKMG--------VRTFSQKEMAF 704
Query: 129 S-LSL-------AAARRIVEADEFMRAGLYDGWLPNL 157
+ L L + V AD + GL ++P L
Sbjct: 705 NLLGLLTPEVVELCQKSPVMAD--LNGGL--QFVPEL 737
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 28.6 bits (65), Expect = 2.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+ +IGAG +GS A +
Sbjct: 5 ISIIGAGFVGSTTAHWLAA 23
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 28.6 bits (65), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 161 NLLKGQTVGVIGAGRIGSAYARMMV 185
++ Q V ++G G +GS+YA M
Sbjct: 1 SMPNHQKVVLVGDGAVGSSYAFAMA 25
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 13/73 (17%)
Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
IG + L ++ KF + +
Sbjct: 7 FAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSD-NRAKFTSLFPSV-----------PF 54
Query: 227 ASSMDEVLREADV 239
A+S ++++ +A +
Sbjct: 55 AASAEQLITDASI 67
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 28.3 bits (63), Expect = 3.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 168 VGVIGAGRIGSAYAR 182
V V+G GR GS R
Sbjct: 10 VVVVGVGRAGSVRLR 24
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 28.4 bits (63), Expect = 3.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 167 TVGVIGAGRIGSAYAR 182
VG++G+G + A
Sbjct: 30 KVGILGSGDFARSLAT 45
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVE 186
+L G +G++G G++G RM
Sbjct: 32 ILPGAWLGMVGGGQLG----RMFCF 52
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.2 bits (62), Expect = 3.2
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+ +IGAG + + A+ + GF++ +Y +R E+ Q ++A +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVY------SRTEESARELAQKVEA--------E 57
Query: 226 RASSMDEVLREADVISL 242
+ + EV A + +
Sbjct: 58 YTTDLAEVNPYAKLYIV 74
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 28.3 bits (64), Expect = 3.3
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+ ++GAG++G A A M++
Sbjct: 2 ITILGAGKVGMATAVMLMM 20
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.5 bits (61), Expect = 3.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+ V+GAG+IG A ++
Sbjct: 8 ICVVGAGKIGQMIAALLKT 26
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 28.4 bits (64), Expect = 3.6
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 229 SMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 270
++EV+R+ D++ T +++ +E L MK I+ N
Sbjct: 268 KLNEVIRQVDIVI-------TCTGNKNVVTREHLDRMKNSCIVCN 305
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVE 186
L G T+G+IG G++G +MM +
Sbjct: 9 LKFGATIGIIGGGQLG----KMMAQ 29
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 28.2 bits (64), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 164 KGQTVGVIGAGRIGSAYARMMV 185
Q V ++G G +GS+YA MV
Sbjct: 8 DHQKVILVGDGAVGSSYAYAMV 29
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 28.2 bits (64), Expect = 3.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 165 GQTVGVIGAGRIGSAYARMMV 185
+ +G+IG G +G+A A ++
Sbjct: 1 ARKIGIIGLGNVGAAVAHGLI 21
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 28.2 bits (63), Expect = 3.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 226 RASSMDEVLREADVISLHPVLDKTT--YHLINKERLATMKKEAILVN 270
+ ++++V+ EAD+ TT +I + + MK AI+ N
Sbjct: 310 QVLTLEDVVSEADIFVT------TTGNKDIIMLDHMKKMKNNAIVCN 350
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 28.4 bits (64), Expect = 4.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 229 SMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 270
+++V+ EA + TT +I E M+ +AI+ N
Sbjct: 259 LVEDVVEEAHIFV-------TTTGNDDIITSEHFPRMRDDAIVCN 296
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 28.2 bits (63), Expect = 4.1
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 226 RASSMDEVLREADVISLHPVLDKTT---YHLINKERLATMKKEAILVN 270
R +M+ +AD+ T YH+IN + + M+ AI+ N
Sbjct: 322 RVVTMEYAADKADIFV-------TATGNYHVINHDHMKAMRHNAIVCN 362
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 28.0 bits (63), Expect = 4.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 157 LFVGNLLKGQTVGVIGAGR-IGSAYARMMVE 186
LF +LL+ + + G G IG A + +
Sbjct: 19 LFCPDLLRDKVAFITGGGSGIGFRIAEIFMR 49
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 27.9 bits (63), Expect = 4.2
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 20/70 (28%)
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--------DKTTYHL------INKE 257
+ L+ G + +++++V+ + DV+ V D+ Y +N +
Sbjct: 200 EELREKG---MKVVETTTLEDVIGKLDVLY---VTRIQKERFPDEQEYLKVKGSYQVNLK 253
Query: 258 RLATMKKEAI 267
L K E
Sbjct: 254 VLEKAKDELR 263
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 28.0 bits (63), Expect = 4.2
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
+G+ GAG G+ +A + F + I ++ + + + P
Sbjct: 122 SVLGLFGAGTQGAEHAAQLSARFALEAIL--VHDPYASPEILER----IGRRCGVPA--- 172
Query: 226 RASSMDEVLREADVI-----SLHPVLD 247
R ++ ++ +AD++ S P+
Sbjct: 173 RMAAPADIAAQADIVVTATRSTTPLFA 199
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 27.8 bits (62), Expect = 4.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 168 VGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
+ +IG G I AY ++ + + L+ L T Y
Sbjct: 5 IAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPK-VLGTLATRYR 48
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 27.9 bits (63), Expect = 4.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 162 LLKGQTVGVIGAGRIGSAYARMMVE 186
+L G+T+G+IG G++G RMM
Sbjct: 11 ILPGKTIGIIGGGQLG----RMMAL 31
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 27.5 bits (62), Expect = 4.8
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 21 TKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIG--DKCDGVIGQLTEDW--- 74
TKP P + L + ++ + + K L + I+ ++ D ++G T
Sbjct: 82 TKPYPEIPYTLEALKSKGFKLAVVSNKLEEL-SKKILDILNLSGYFDLIVGGDTFGEKKP 140
Query: 75 -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
+ L G + + VG + D+ A + G
Sbjct: 141 SPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKT 179
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 27.9 bits (63), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 164 KGQTVGVIGAGRIGSAYARMMV 185
V +IGAG +GS+YA ++
Sbjct: 4 HVNKVALIGAGFVGSSYAFALI 25
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 28.1 bits (62), Expect = 5.1
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 9 VWNPNGKYRVVSTKPMPGTRWIN 31
+ NG S +P + W
Sbjct: 350 ERHSNGSQSQHSRLTLPRSLWNA 372
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.8 bits (63), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 168 VGVIGAGRIGSAYARMMV 185
VGV+G G +GS A +V
Sbjct: 3 VGVVGTGFVGSTAAFALV 20
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 27.7 bits (61), Expect = 5.5
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 167 TVGVIGAGRIGSAYAR 182
VG+ G A
Sbjct: 8 RVGIFDDGSSTVNMAE 23
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
VG++G+G +GSA A +
Sbjct: 3 VGIVGSGMVGSATAYALAL 21
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.7 bits (62), Expect = 5.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 159 VGNLLKGQTVGVIGA-GRIGSAYAR 182
+ +++ V+G G IG A +
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTK 53
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 27.5 bits (62), Expect = 5.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMV 185
+K + VIGAG +GS A
Sbjct: 5 VKPTKLAVIGAGAVGSTLAFAAA 27
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 17/75 (22%)
Query: 168 VGVIGAGRIGSAYAR---MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW 224
G+ G G GS ++ D + E+F YG
Sbjct: 5 FGICGLGFAGSVLMAPAMRHHPDAQIVAA-CDPNED-VRERFGKEYG------------I 50
Query: 225 KRASSMDEVLREADV 239
+++ E+++ +
Sbjct: 51 PVFATLAEMMQHVQM 65
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 27.6 bits (61), Expect = 6.1
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 14/109 (12%)
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
T+ IG G + A + L YDL A G +P
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAAS--GALRARAAELGVEP---- 78
Query: 226 RASSMDEVLREADVI--SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
+ + ADV+ + K + EA+ ++ +
Sbjct: 79 -LDDVAGI-ACADVVLSLVVGAATKAVAASA----APHLSDEAVFIDLN 121
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 27.5 bits (62), Expect = 6.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 168 VGVIGAGRIGSAYARMMV 185
V VIGAG +G++Y ++
Sbjct: 9 VVVIGAGFVGASYVFALM 26
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 27.6 bits (62), Expect = 6.1
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 160 GNLLKGQTVGVIGAGRIGSA---YARMM 184
L G T VIG G +G R +
Sbjct: 167 PLLGPGSTAVVIGVGGLGHVGIQILRAV 194
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.5 bits (62), Expect = 6.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 168 VGVIGAGRIGSAYARMMV 185
+G++G GR+GS+ A ++
Sbjct: 3 IGIVGLGRVGSSTAFALL 20
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 27.5 bits (62), Expect = 6.5
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 163 LKGQTVGVIGAGR-IGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYG 211
LKG+ V G+ IG A A + G + + Y + E YG
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG 82
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 27.5 bits (61), Expect = 6.8
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 163 LKGQTVGVIGAGR-IGSAYARMM 184
G+ V GAG +G YA +
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLF 39
>3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding,
nucleotide metabolism, structural genomics; 1.45A
{Brucella melitensis} PDB: 3mbq_A
Length = 178
Score = 26.9 bits (60), Expect = 6.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 105 ANKYGIAVGNTPGV 118
A K GI NTPG
Sbjct: 101 AFKNGITCLNTPGT 114
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 168 VGVIGAGRIGSAYARMMV 185
V +IGAG +G++ A M
Sbjct: 10 VAIIGAGFVGASAAFTMA 27
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation,
nucleotide-binding, cell cycle, coiled coil,
ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Length = 162
Score = 26.9 bits (59), Expect = 7.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 280 VALVEHLKQNPMFRVGLDV-FEDEPYMKPGLSEMKNAIVVPHIASASK 326
AL E + + DV ED PY ++AIVVP ++ ++
Sbjct: 33 NALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTE 80
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 27.5 bits (62), Expect = 7.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+G +GAGR+GS A +
Sbjct: 3 LGFVGAGRVGSTSAFTCLL 21
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 27.3 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 163 LKGQTVGVIGAGR-IGSAYARMM 184
G+ V V GAG +G AYA
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAF 29
>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly
roll, mercury derivative; 1.05A {Escherichia coli} SCOP:
b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A*
2hr6_A* 2hrm_A* 1rnj_A* 1syl_A*
Length = 152
Score = 26.8 bits (60), Expect = 7.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 105 ANKYGIAVGNTPGV 118
+K+GI +GN G+
Sbjct: 75 GHKHGIVLGNLVGL 88
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 27.3 bits (61), Expect = 7.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 168 VGVIGAGRIGSAYARMMVE 186
+ V+G +G A A ++
Sbjct: 24 ITVVGCDAVGMADAISVLM 42
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 27.0 bits (61), Expect = 8.0
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQPVT 223
+V ++G G +G+ A++ + G + D+ RL+ +G L A
Sbjct: 168 SVVILGGGTVGTNAAKIAL-GMGAQVTILDVNHK-RLQYLDDVFGGRVITLTAT------ 219
Query: 224 WKRASSMDEVLREAD-VISLHPVL---DKTTYHLINKERLATMKKEAILV 269
+++ + ++ AD +I VL K L+ ++ L+ MK+ A++V
Sbjct: 220 ---EANIKKSVQHADLLIG--AVLVPGAKAP-KLVTRDMLSLMKEGAVIV 263
>3tqz_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; purines,
pyrimidines, nucleosides, nucleotides; 1.75A {Coxiella
burnetii}
Length = 155
Score = 26.4 bits (59), Expect = 8.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 105 ANKYGIAVGNTPGV 118
+K+GI +GN G+
Sbjct: 78 GHKHGIVLGNLVGL 91
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 26.9 bits (60), Expect = 8.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 161 NLLKGQTVGVIGAGR-IGSAYARMM 184
++ G+ V V GAG IG A+A
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAF 47
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 27.1 bits (61), Expect = 8.4
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
V +G G + +A A +V+ + + + E+ G
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE-KRERLEKELG-------------VE 47
Query: 227 ASSMDEVLREADVI 240
S+ L DV+
Sbjct: 48 TSATLPELHSDDVL 61
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 27.1 bits (61), Expect = 8.7
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 222 VTWKRASSMDEVLREADVISLHPVL--------DKTTYH------LINKERLATMKKEAI 267
K + EV+ E DV+ V D+ Y +++ + MKK++I
Sbjct: 199 YPVKEVENPFEVINEVDVLY---VTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSI 255
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 26.8 bits (60), Expect = 9.1
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 164 KGQTVGVIGAGRIGSAYARMMVE 186
+ V+G G +G A +
Sbjct: 13 TVNKITVVGGGELGIACTLAISA 35
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 27.0 bits (61), Expect = 9.3
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQPVT 223
V ++G G +G+ A+M V G + +D+ RL T +G + L +N
Sbjct: 169 KVVILGGGVVGTEAAKMAV-GLGAQVQIFDINVE-RLSYLETLFGSRVELLYSN------ 220
Query: 224 WKRASSMDEVLREAD-VISLHPVL---DKTTYHLINKERLATMKKEAILV 269
++ ++ + EAD +I VL + L+ + M+ +++V
Sbjct: 221 ---SAEIETAVAEADLLIG--AVLVPGRRAP-ILVPASLVEQMRTGSVIV 264
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 26.7 bits (60), Expect = 9.6
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 163 LKGQTVGVIGAGR-IGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYG 211
L G+ + GA IG A E G ++ + + + G
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,245,689
Number of extensions: 330321
Number of successful extensions: 1746
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 191
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)