BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020302
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 65/84 (77%)

Query: 172 GEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231
           G +GS+ +  CQ + C+AD+  AK YHRRHKVCE H+KAS+V  +GL QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 232 LSEFDNGKRSCRKRLADHNRRRRK 255
           L EFD  KRSCR+RLA HN RRRK
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRK 84


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 55/79 (69%)

Query: 177 ANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
            ++ RCQ   C AD++  K YH+RH+VC   + AS V+  G  +R+CQQC +FHLL +FD
Sbjct: 1   GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFD 60

Query: 237 NGKRSCRKRLADHNRRRRK 255
            GKRSCR++L  HN RR++
Sbjct: 61  EGKRSCRRKLERHNNRRKR 79


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 182 CQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
           CQ + C ADL+  K YHRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|4HZN|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 333

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 98  PRAYTSASSY--APTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLG-GRTYF 154
           P AY+  + Y  A T H+  ++D    G+ ++P T EV  PVD      G+ L    +YF
Sbjct: 184 PAAYSPRAVYREARTAHTFRALDEP--GFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYF 241

Query: 155 SSADDDFVSRLYRR 168
           S  D   ++ L+RR
Sbjct: 242 SXVDKAALA-LWRR 254


>pdb|4HZP|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 318

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 98  PRAYTSASSY--APTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLG-GRTYF 154
           P AY+  + Y  A T H+  ++D    G+ ++P T EV  PVD      G+ L    +YF
Sbjct: 169 PAAYSPRAVYREARTAHTFRALDEP--GFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYF 226

Query: 155 SSADDDFVSRLYRR 168
           S  D   ++ L+RR
Sbjct: 227 SMVDKAALA-LWRR 239


>pdb|4HZO|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 318

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 98  PRAYTSASSY--APTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLG-GRTYF 154
           P AY+  + Y  A T H+  ++D    G+ ++P T EV  PVD      G+ L    +YF
Sbjct: 169 PAAYSPRAVYREARTAHTFRALDEP--GFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYF 226

Query: 155 SSADDDFVSRLYRR 168
           S  D   ++ L+RR
Sbjct: 227 SMVDKAALA-LWRR 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.129    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,323,132
Number of Sequences: 62578
Number of extensions: 281671
Number of successful extensions: 483
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 7
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)