Query 020302
Match_columns 328
No_of_seqs 162 out of 300
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 3.4E-43 1.2E-47 283.6 -2.4 88 174-261 3-90 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 2.5E-42 8.5E-47 275.7 -3.5 84 178-261 2-85 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.3E-32 4.6E-37 206.5 0.5 59 178-236 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 25.2 16 0.00055 32.6 0.2 37 194-231 100-136 (269)
5 4a6q_A Histone deacetylase com 16.9 25 0.00087 30.1 -0.3 28 199-237 21-48 (143)
6 2yew_C E2 envelope glycoprotei 16.1 80 0.0028 31.4 2.9 33 2-34 324-358 (421)
7 1gh9_A 8.3 kDa protein (gene M 15.9 41 0.0014 25.6 0.7 28 203-233 6-33 (71)
8 2dt7_A Splicing factor 3A subu 14.1 39 0.0013 22.9 0.1 12 191-202 19-30 (38)
9 2jrw_A Cyclic extended PEP.1; 13.9 99 0.0034 19.9 1.9 16 99-114 9-24 (26)
10 2epp_A POZ-, at HOOK-, and zin 12.7 2.9E+02 0.01 19.6 4.4 25 221-255 14-38 (66)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.4e-43 Score=283.62 Aligned_cols=88 Identities=63% Similarity=1.085 Sum_probs=80.1
Q ss_pred CCCCCCCccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccccccchHHHHHHHHHHHh
Q 020302 174 AGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRR 253 (328)
Q Consensus 174 pgs~~~p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RR 253 (328)
.|+++.++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCC
Q 020302 254 RKSQQQPT 261 (328)
Q Consensus 254 RK~~~~a~ 261 (328)
||+++++.
T Consensus 83 Rk~~~~~~ 90 (94)
T 1ul4_A 83 RKSSGESG 90 (94)
T ss_dssp CSCCCC--
T ss_pred ccCCCCcC
Confidence 99888753
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.5e-42 Score=275.74 Aligned_cols=84 Identities=46% Similarity=0.957 Sum_probs=79.5
Q ss_pred CCCccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccccccchHHHHHHHHHHHhhccC
Q 020302 178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257 (328)
Q Consensus 178 ~~p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~~ 257 (328)
..++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+.
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCC
Q 020302 258 QQPT 261 (328)
Q Consensus 258 ~~a~ 261 (328)
++..
T Consensus 82 ~~~~ 85 (88)
T 1ul5_A 82 VDKG 85 (88)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 6643
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=1.3e-32 Score=206.50 Aligned_cols=59 Identities=63% Similarity=1.171 Sum_probs=57.2
Q ss_pred CCCccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccc
Q 020302 178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236 (328)
Q Consensus 178 ~~p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD 236 (328)
+.++||||||++||+.+|+|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.21 E-value=16 Score=32.63 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=28.9
Q ss_pred chhhhhhccchhhhcCCcEEeEcCchhhhhhhhhcccc
Q 020302 194 AKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231 (328)
Q Consensus 194 aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~ 231 (328)
+..++++++-|..+-. +.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG~-~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCGH-EMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTCC-BEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCCC-cCccCCCceeeeCCCCCCEec
Confidence 3568899999998754 455578888999999997553
No 5
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=16.85 E-value=25 Score=30.15 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=22.7
Q ss_pred hhccchhhhcCCcEEeEcCchhhhhhhhhcccccccccc
Q 020302 199 RRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDN 237 (328)
Q Consensus 199 RRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg 237 (328)
-|.++|+.+++ -||.+=++||.|+||..
T Consensus 21 dRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 21 DREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred cccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 58899999865 37766689999999974
No 6
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=16.13 E-value=80 Score=31.36 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=23.2
Q ss_pred ccccCCCcceeEecCCCCCCC-Cccc-ccccccCC
Q 020302 2 VDYEWGNPSTILLTGDEATQE-PNQS-RQIFDHYT 34 (328)
Q Consensus 2 l~y~wgnps~i~l~~~e~~~~-~~q~-r~~fd~y~ 34 (328)
|||-|||-..+-|=..|-+.. +.-- -.|+-||.
T Consensus 324 ~Ey~WGN~~PvR~WaQ~sa~G~pHG~PHEIi~hYY 358 (421)
T 2yew_C 324 VEYVWGNNNPVRLWAQKSSSSSAHGNPISIVSHYY 358 (421)
T ss_dssp EEECBTTSCCEEECCCCSSCCSSCSCSSSCCSSSS
T ss_pred eEEEccCCCceEEeeeccCCCCCCCCchhhhhhhh
Confidence 799999998888877774332 2222 57888775
No 7
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=15.92 E-value=41 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=21.4
Q ss_pred chhhhcCCcEEeEcCchhhhhhhhhcccccc
Q 020302 203 VCEFHSKASTVIAAGLTQRFCQQCSRFHLLS 233 (328)
Q Consensus 203 VCE~HsKAp~Vvv~G~~qRFCQQCsRFH~Ls 233 (328)
.|+ ..+..++-+|....-|+ ||+-+.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 476 56667888899999998 99855543
No 8
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.06 E-value=39 Score=22.94 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=7.6
Q ss_pred hhcchhhhhhcc
Q 020302 191 LTHAKHYHRRHK 202 (328)
Q Consensus 191 Ls~aK~YhRRhR 202 (328)
|..+|+||+||-
T Consensus 19 lk~Ike~Hrr~P 30 (38)
T 2dt7_A 19 LKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC
Confidence 455677777763
No 9
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=13.87 E-value=99 Score=19.86 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=9.8
Q ss_pred ccccCCCCCCCCCCCc
Q 020302 99 RAYTSASSYAPTHHSM 114 (328)
Q Consensus 99 ra~~s~~~y~~~~~~~ 114 (328)
..|-|+.-|.|||++.
T Consensus 9 enyfserpyhppppc~ 24 (26)
T 2jrw_A 9 ENYFSERPYHPPPPCX 24 (26)
T ss_dssp SSSCCSSSCCSCSCC-
T ss_pred hhhcccCCCCCCCCCC
Confidence 3445556688877764
No 10
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=12.68 E-value=2.9e+02 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=16.0
Q ss_pred hhhhhhhccccccccccccchHHHHHHHHHHHhhc
Q 020302 221 RFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 255 (328)
Q Consensus 221 RFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK 255 (328)
--|.+|++ .| +.+..|.+|.+....
T Consensus 14 y~C~~CgK-----~F-----~~~s~L~~H~r~Htg 38 (66)
T 2epp_A 14 LPCGLCGK-----VF-----TDANRLRQHEAQHGV 38 (66)
T ss_dssp CCCTTTCC-----CC-----SCHHHHHHHHHHHTT
T ss_pred cCCCCCCC-----cc-----CCHHHHHhhhhhhCC
Confidence 45889987 44 345568888665443
Done!