Query 020302
Match_columns 328
No_of_seqs 162 out of 300
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 14:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ul4a_ g.72.1.1 (A:) Squamosa 100.0 2.8E-42 2.1E-46 270.4 -2.5 80 180-259 2-81 (81)
2 d1ul5a_ g.72.1.1 (A:) Squamosa 100.0 3.4E-42 2.5E-46 272.5 -3.5 82 180-261 2-83 (86)
3 d1wj0a_ g.72.1.1 (A:) Squamosa 100.0 1.2E-32 8.6E-37 204.5 0.7 57 180-236 2-58 (58)
4 d2glia4 g.37.1.1 (A:198-228) F 20.0 11 0.0008 23.8 0.1 17 180-196 3-19 (31)
5 d1wfka_ g.50.1.1 (A:) Zinc fin 16.1 60 0.0044 23.1 3.5 46 176-226 6-60 (88)
6 d2glia5 g.37.1.1 (A:229-257) F 12.7 25 0.0018 21.8 0.5 15 180-194 3-17 (29)
7 d4cpai_ g.3.2.1 (I:) Carboxype 12.1 15 0.0011 23.8 -0.8 9 221-229 21-29 (37)
8 d2dida1 g.43.1.1 (A:8-47) Trip 10.9 39 0.0028 21.0 0.9 27 202-228 2-28 (40)
9 d1x62a1 g.39.1.3 (A:43-73) PDZ 7.4 26 0.0019 22.0 -1.0 25 185-210 3-29 (31)
10 d2glia3 g.37.1.1 (A:168-197) F 6.5 66 0.0048 19.2 0.5 14 180-193 3-16 (30)
No 1
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=2.8e-42 Score=270.41 Aligned_cols=80 Identities=66% Similarity=1.137 Sum_probs=78.0
Q ss_pred CccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccccccchHHHHHHHHHHHhhccCCC
Q 020302 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQ 259 (328)
Q Consensus 180 p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~~~~ 259 (328)
.+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus 2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~ 81 (81)
T d1ul4a_ 2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE 81 (81)
T ss_dssp CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998864
No 2
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=3.4e-42 Score=272.48 Aligned_cols=82 Identities=48% Similarity=0.964 Sum_probs=80.1
Q ss_pred CccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccccccchHHHHHHHHHHHhhccCCC
Q 020302 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQ 259 (328)
Q Consensus 180 p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~~~~ 259 (328)
++||||||++||+.+|+|||||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus 2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~ 81 (86)
T d1ul5a_ 2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD 81 (86)
T ss_dssp CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CC
Q 020302 260 PT 261 (328)
Q Consensus 260 a~ 261 (328)
+.
T Consensus 82 ~~ 83 (86)
T d1ul5a_ 82 KG 83 (86)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 3
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.97 E-value=1.2e-32 Score=204.49 Aligned_cols=57 Identities=65% Similarity=1.211 Sum_probs=55.9
Q ss_pred CccccCCCchhhhcchhhhhhccchhhhcCCcEEeEcCchhhhhhhhhccccccccc
Q 020302 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236 (328)
Q Consensus 180 p~CQVdGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD 236 (328)
.+||||||++||+.+|+|||||||||.|+||++|+|+|++|||||||+|||+|+|||
T Consensus 2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD 58 (58)
T d1wj0a_ 2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58 (58)
T ss_dssp EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence 479999999999999999999999999999999999999999999999999999998
No 4
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=11 Score=23.83 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=14.3
Q ss_pred CccccCCCchhhhcchh
Q 020302 180 PRCQAEGCSADLTHAKH 196 (328)
Q Consensus 180 p~CQVdGC~aDLs~aK~ 196 (328)
-.|+++||.-..+.+.+
T Consensus 3 Y~C~~~gC~KafsNsSD 19 (31)
T d2glia4 3 YMCEHEGCSKAFSNASD 19 (31)
T ss_dssp EECCSTTCCCEESSSST
T ss_pred ccccCCChhhhhcchhh
Confidence 46999999999988755
No 5
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.11 E-value=60 Score=23.11 Aligned_cols=46 Identities=28% Similarity=0.619 Sum_probs=23.9
Q ss_pred CCCCCccccCCCchhhhcchhhhhhc-------cchhhhcCCcEEe--EcCchhhhhhhh
Q 020302 176 SANIPRCQAEGCSADLTHAKHYHRRH-------KVCEFHSKASTVI--AAGLTQRFCQQC 226 (328)
Q Consensus 176 s~~~p~CQVdGC~aDLs~aK~YhRRh-------RVCE~HsKAp~Vv--v~G~~qRFCQQC 226 (328)
++....|. .|...++. +.||| -+|..++....++ .+...+|-|..|
T Consensus 6 ~~~~s~C~--~C~~~Fs~---~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C 60 (88)
T d1wfka_ 6 SGMESRCY--GCAVKFTL---FKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQC 60 (88)
T ss_dssp CCCCSBCT--TTCCBCCS---SSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHH
T ss_pred CcccCcCc--ccCchhcc---ccccccccccChhhChHHhCCccccCCCCCCCCeECHHH
Confidence 34567788 59988864 33444 3455555433322 123334555554
No 6
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.73 E-value=25 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.3
Q ss_pred CccccCCCchhhhcc
Q 020302 180 PRCQAEGCSADLTHA 194 (328)
Q Consensus 180 p~CQVdGC~aDLs~a 194 (328)
-.|+|+||+......
T Consensus 3 Y~Ck~~gC~K~YtdP 17 (29)
T d2glia5 3 YVCKLPGCTKRYTDP 17 (29)
T ss_dssp EECCSTTTCCEESSH
T ss_pred eecccCCCCcccCCH
Confidence 469999999766543
No 7
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=12.11 E-value=15 Score=23.78 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.5
Q ss_pred hhhhhhhcc
Q 020302 221 RFCQQCSRF 229 (328)
Q Consensus 221 RFCQQCsRF 229 (328)
-|||.|-+|
T Consensus 21 ~fcqacw~~ 29 (37)
T d4cpai_ 21 WFCQACWNS 29 (37)
T ss_dssp SSCCEEETT
T ss_pred HHHHHHHHh
Confidence 599999876
No 8
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.91 E-value=39 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=20.1
Q ss_pred cchhhhcCCcEEeEcCchhhhhhhhhc
Q 020302 202 KVCEFHSKASTVIAAGLTQRFCQQCSR 228 (328)
Q Consensus 202 RVCE~HsKAp~Vvv~G~~qRFCQQCsR 228 (328)
.+|+.|-+...+.-.--.+--|..|..
T Consensus 2 ~~C~~H~e~l~lfC~~d~~~iC~~C~~ 28 (40)
T d2dida1 2 SLCPQHHEALSLFCYEDQEAVCLICAI 28 (40)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHT
T ss_pred CcchhhCccceEEcccCCcEeeccCcC
Confidence 589999888877766666677777764
No 9
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=26 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.475 Sum_probs=17.3
Q ss_pred CCCchhhhcchhhhh--hccchhhhcCC
Q 020302 185 EGCSADLTHAKHYHR--RHKVCEFHSKA 210 (328)
Q Consensus 185 dGC~aDLs~aK~YhR--RhRVCE~HsKA 210 (328)
..|+..|.. |.||- -.-.||.|+++
T Consensus 3 ~dCg~NLKq-rG~Ffve~~lyCE~HAr~ 29 (31)
T d1x62a1 3 TDCGTNLKQ-KGHFFVEDQIYCEKHARE 29 (31)
T ss_dssp SSSCCCHHH-HCCEESSSCEECHHHHHH
T ss_pred cccccChhh-cceEEeccEEehhhhhhh
Confidence 478999986 44442 34679999875
No 10
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.46 E-value=66 Score=19.18 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.5
Q ss_pred CccccCCCchhhhc
Q 020302 180 PRCQAEGCSADLTH 193 (328)
Q Consensus 180 p~CQVdGC~aDLs~ 193 (328)
-.|.++||+...+.
T Consensus 3 ~~C~~~gCgk~F~~ 16 (30)
T d2glia3 3 HKCTFEGCRKSYSR 16 (30)
T ss_dssp CCCCSTTCCCCCSS
T ss_pred eeCCCCCCCceECC
Confidence 47999999987765
Done!