Query 020304
Match_columns 328
No_of_seqs 293 out of 2211
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00413 lipoate synthase; Pro 100.0 2.6E-53 5.7E-58 387.5 27.7 293 32-326 75-373 (398)
2 PLN02428 lipoic acid synthase 100.0 5.6E-53 1.2E-57 388.1 29.4 280 47-326 46-325 (349)
3 COG0320 LipA Lipoate synthase 100.0 9.8E-53 2.1E-57 363.4 24.0 273 47-326 19-291 (306)
4 TIGR00510 lipA lipoate synthas 100.0 2.9E-52 6.2E-57 379.6 28.2 274 47-326 12-285 (302)
5 PRK12928 lipoyl synthase; Prov 100.0 1E-50 2.3E-55 368.8 29.2 277 43-326 5-282 (290)
6 KOG2672 Lipoate synthase [Coen 100.0 9.9E-51 2.2E-55 350.0 23.6 278 49-326 57-334 (360)
7 PRK05481 lipoyl synthase; Prov 100.0 8.8E-44 1.9E-48 324.3 30.6 272 48-326 3-274 (289)
8 PRK08444 hypothetical protein; 100.0 8.8E-33 1.9E-37 257.7 18.1 239 56-306 3-265 (353)
9 TIGR03700 mena_SCO4494 putativ 100.0 7.6E-32 1.6E-36 253.1 19.4 244 57-311 2-269 (351)
10 PRK05926 hypothetical protein; 100.0 4.8E-31 1E-35 247.5 20.8 221 56-286 18-259 (370)
11 COG0502 BioB Biotin synthase a 100.0 6.2E-31 1.3E-35 239.0 20.5 228 67-310 17-256 (335)
12 PRK08445 hypothetical protein; 100.0 4.9E-30 1.1E-34 239.7 19.9 235 67-310 7-266 (348)
13 TIGR03551 F420_cofH 7,8-dideme 100.0 8.6E-30 1.9E-34 238.7 21.4 234 68-311 5-264 (343)
14 PRK05927 hypothetical protein; 100.0 1.5E-30 3.3E-35 242.6 15.8 237 67-311 10-268 (350)
15 PRK09240 thiH thiamine biosynt 100.0 1E-29 2.2E-34 239.9 21.0 240 58-310 28-284 (371)
16 PRK07360 FO synthase subunit 2 100.0 7E-30 1.5E-34 241.2 19.2 230 55-292 9-265 (371)
17 PRK06256 biotin synthase; Vali 100.0 5.4E-29 1.2E-33 233.1 24.2 240 56-310 10-263 (336)
18 PRK07094 biotin synthase; Prov 100.0 7.9E-29 1.7E-33 230.8 24.9 229 68-311 5-243 (323)
19 PRK09234 fbiC FO synthase; Rev 100.0 3.6E-29 7.9E-34 254.8 21.1 242 56-305 477-745 (843)
20 PRK15108 biotin synthase; Prov 100.0 4.1E-28 9E-33 226.6 25.2 222 68-305 11-244 (345)
21 PRK08508 biotin synthase; Prov 100.0 6.2E-28 1.3E-32 219.6 24.6 202 99-311 2-213 (279)
22 TIGR02351 thiH thiazole biosyn 100.0 1.5E-28 3.2E-33 231.8 21.0 240 54-306 23-279 (366)
23 TIGR03699 mena_SCO4550 menaqui 100.0 6.2E-29 1.4E-33 232.9 17.8 233 68-311 7-262 (340)
24 PLN02389 biotin synthase 100.0 9.3E-28 2E-32 225.8 24.4 227 67-307 50-288 (379)
25 PRK09613 thiH thiamine biosynt 100.0 1E-27 2.3E-32 230.0 23.5 257 55-323 35-339 (469)
26 COG1060 ThiH Thiamine biosynth 100.0 1.4E-28 3E-33 229.5 15.9 227 53-286 8-251 (370)
27 TIGR00423 radical SAM domain p 100.0 4.3E-27 9.3E-32 217.5 21.1 204 103-311 5-229 (309)
28 COG0621 MiaB 2-methylthioadeni 100.0 2.6E-27 5.5E-32 223.8 18.7 262 37-314 92-368 (437)
29 TIGR00433 bioB biotin syntheta 99.9 2.8E-25 6.1E-30 204.4 22.9 221 77-311 5-235 (296)
30 PRK09234 fbiC FO synthase; Rev 99.9 2.1E-24 4.6E-29 220.0 22.8 247 56-312 17-301 (843)
31 PRK14327 (dimethylallyl)adenos 99.9 2.5E-24 5.4E-29 209.6 19.8 210 103-314 212-435 (509)
32 TIGR03550 F420_cofG 7,8-dideme 99.9 5.4E-24 1.2E-28 197.7 19.6 200 103-311 4-231 (322)
33 PRK14340 (dimethylallyl)adenos 99.9 1E-23 2.3E-28 203.5 21.8 209 103-313 149-371 (445)
34 PRK06267 hypothetical protein; 99.9 2E-23 4.4E-28 195.7 20.9 216 76-312 4-231 (350)
35 PRK14335 (dimethylallyl)adenos 99.9 3.3E-23 7.1E-28 200.8 21.2 211 103-314 152-381 (455)
36 PRK14329 (dimethylallyl)adenos 99.9 5.6E-23 1.2E-27 199.7 22.7 209 103-313 168-396 (467)
37 PRK05904 coproporphyrinogen II 99.9 1.5E-23 3.1E-28 196.7 17.9 218 103-326 6-238 (353)
38 TIGR01579 MiaB-like-C MiaB-lik 99.9 2E-23 4.2E-28 200.7 18.9 211 103-315 138-362 (414)
39 PRK14332 (dimethylallyl)adenos 99.9 6E-23 1.3E-27 198.3 21.7 208 103-314 154-375 (449)
40 PRK14339 (dimethylallyl)adenos 99.9 6.3E-23 1.4E-27 196.9 21.0 209 103-313 127-352 (420)
41 PRK14331 (dimethylallyl)adenos 99.9 2.6E-23 5.6E-28 200.9 17.9 209 103-315 146-369 (437)
42 PRK05660 HemN family oxidoredu 99.9 3.8E-22 8.3E-27 189.2 23.7 216 105-326 8-243 (378)
43 PRK14326 (dimethylallyl)adenos 99.9 1.3E-22 2.7E-27 198.5 20.3 187 103-292 157-355 (502)
44 PRK08446 coproporphyrinogen II 99.9 2.9E-22 6.4E-27 188.2 21.9 214 107-326 4-231 (350)
45 TIGR01574 miaB-methiolase tRNA 99.9 1.8E-22 3.9E-27 195.1 20.5 208 103-313 145-369 (438)
46 PRK14337 (dimethylallyl)adenos 99.9 1.2E-22 2.6E-27 196.6 18.9 208 103-313 148-371 (446)
47 PRK14325 (dimethylallyl)adenos 99.9 1.7E-22 3.6E-27 195.8 19.8 207 103-313 147-371 (444)
48 PRK14336 (dimethylallyl)adenos 99.9 3.1E-22 6.8E-27 192.0 21.5 208 103-313 124-347 (418)
49 PRK14330 (dimethylallyl)adenos 99.9 4.7E-22 1E-26 192.0 22.4 210 103-314 140-364 (434)
50 TIGR01125 MiaB-like tRNA modif 99.9 6.9E-22 1.5E-26 190.8 22.3 188 103-292 135-333 (430)
51 PRK14862 rimO ribosomal protei 99.9 2E-22 4.3E-27 194.6 18.1 205 103-313 139-368 (440)
52 KOG2900 Biotin synthase [Coenz 99.9 3.9E-23 8.5E-28 177.2 11.5 212 77-299 60-283 (380)
53 TIGR00089 RNA modification enz 99.9 2.1E-22 4.5E-27 194.5 17.8 212 103-316 139-364 (429)
54 PRK14338 (dimethylallyl)adenos 99.9 7.3E-22 1.6E-26 191.6 21.6 188 103-292 155-353 (459)
55 PRK14328 (dimethylallyl)adenos 99.9 2.7E-22 5.9E-27 193.9 18.3 208 103-314 147-370 (439)
56 PRK08599 coproporphyrinogen II 99.9 3.4E-22 7.4E-27 189.9 18.5 211 110-326 8-240 (377)
57 PRK14334 (dimethylallyl)adenos 99.9 4.9E-22 1.1E-26 192.1 19.6 208 103-313 138-359 (440)
58 TIGR01578 MiaB-like-B MiaB-lik 99.9 5.6E-22 1.2E-26 190.6 19.3 211 103-314 133-355 (420)
59 PRK06245 cofG FO synthase subu 99.9 6.6E-22 1.4E-26 185.2 19.0 204 101-312 10-236 (336)
60 PRK05799 coproporphyrinogen II 99.9 9.9E-22 2.1E-26 186.6 20.1 216 105-326 5-239 (374)
61 PRK07379 coproporphyrinogen II 99.9 1.1E-21 2.4E-26 187.3 20.1 217 104-326 11-255 (400)
62 TIGR00539 hemN_rel putative ox 99.9 1.7E-21 3.7E-26 183.9 20.7 214 107-326 4-236 (360)
63 PRK08207 coproporphyrinogen II 99.9 2.1E-21 4.5E-26 188.7 21.5 210 103-319 163-400 (488)
64 PRK14333 (dimethylallyl)adenos 99.9 7.4E-22 1.6E-26 191.2 18.3 209 103-313 148-377 (448)
65 PRK05628 coproporphyrinogen II 99.9 1.4E-21 3.1E-26 185.5 19.8 216 105-326 4-248 (375)
66 PRK09058 coproporphyrinogen II 99.9 2.2E-21 4.7E-26 187.8 20.3 217 104-326 62-304 (449)
67 TIGR02026 BchE magnesium-proto 99.9 4.3E-21 9.3E-26 188.2 19.6 180 105-292 195-384 (497)
68 PRK08208 coproporphyrinogen II 99.9 7.7E-21 1.7E-25 183.3 21.0 215 106-326 42-275 (430)
69 PRK06294 coproporphyrinogen II 99.9 4.8E-21 1E-25 181.2 18.8 216 104-326 7-243 (370)
70 PRK08898 coproporphyrinogen II 99.9 1.1E-20 2.3E-25 180.3 21.1 216 105-326 21-257 (394)
71 PRK09249 coproporphyrinogen II 99.9 1.7E-20 3.8E-25 182.0 22.3 215 105-326 51-290 (453)
72 TIGR03471 HpnJ hopanoid biosyn 99.9 5.5E-21 1.2E-25 186.7 18.9 173 105-288 198-377 (472)
73 TIGR00538 hemN oxygen-independ 99.9 1.4E-20 3.1E-25 182.8 21.5 216 104-326 50-290 (455)
74 PRK06582 coproporphyrinogen II 99.9 9.8E-21 2.1E-25 179.9 19.6 217 104-326 12-250 (390)
75 PRK09057 coproporphyrinogen II 99.9 8.3E-21 1.8E-25 180.3 18.8 216 105-326 6-243 (380)
76 PRK13347 coproporphyrinogen II 99.9 2.1E-20 4.6E-25 181.4 21.0 216 104-326 51-291 (453)
77 smart00729 Elp3 Elongator prot 99.9 1.6E-20 3.4E-25 163.2 17.4 183 104-292 2-198 (216)
78 COG0635 HemN Coproporphyrinoge 99.8 6.7E-19 1.5E-23 168.1 20.3 218 103-326 34-276 (416)
79 cd01335 Radical_SAM Radical SA 99.8 2E-18 4.3E-23 148.0 17.8 177 108-292 2-187 (204)
80 PRK13361 molybdenum cofactor b 99.8 6.6E-18 1.4E-22 157.6 20.5 190 103-304 14-211 (329)
81 TIGR01212 radical SAM protein, 99.8 7.5E-18 1.6E-22 155.1 19.3 182 104-292 19-224 (302)
82 PRK05301 pyrroloquinoline quin 99.8 3.7E-17 8E-22 155.5 23.6 171 103-283 16-189 (378)
83 TIGR02666 moaA molybdenum cofa 99.8 2.9E-17 6.2E-22 153.8 21.1 175 103-288 10-192 (334)
84 PRK08629 coproporphyrinogen II 99.8 5.5E-17 1.2E-21 156.1 22.1 215 103-326 52-282 (433)
85 PF04055 Radical_SAM: Radical 99.8 4.5E-18 9.7E-23 141.6 12.3 158 107-272 1-166 (166)
86 TIGR02109 PQQ_syn_pqqE coenzym 99.8 8.2E-17 1.8E-21 152.1 21.9 171 103-283 7-180 (358)
87 PRK00164 moaA molybdenum cofac 99.8 5.5E-17 1.2E-21 151.7 19.8 174 103-286 17-196 (331)
88 TIGR01210 conserved hypothetic 99.7 1.9E-16 4.1E-21 146.4 21.2 182 103-292 15-219 (313)
89 TIGR03470 HpnH hopanoid biosyn 99.7 3.8E-16 8.2E-21 144.9 22.0 173 100-285 25-200 (318)
90 TIGR02668 moaA_archaeal probab 99.7 1.4E-16 3E-21 147.1 17.8 172 103-286 10-186 (302)
91 PLN02951 Molybderin biosynthes 99.7 5.6E-16 1.2E-20 146.5 22.1 174 103-288 58-238 (373)
92 COG2896 MoaA Molybdenum cofact 99.7 2.6E-16 5.6E-21 143.1 17.9 173 104-288 12-190 (322)
93 TIGR01290 nifB nitrogenase cof 99.7 1.2E-15 2.7E-20 146.8 23.4 214 92-313 13-257 (442)
94 PRK01254 hypothetical protein; 99.7 2.5E-16 5.3E-21 153.9 18.6 186 103-290 372-599 (707)
95 KOG2492 CDK5 activator-binding 99.7 3.2E-16 7E-21 143.0 15.2 204 103-312 220-465 (552)
96 PRK00955 hypothetical protein; 99.7 7.6E-16 1.7E-20 151.4 18.2 181 103-286 292-517 (620)
97 COG1856 Uncharacterized homolo 99.7 6.3E-15 1.4E-19 124.9 18.5 209 103-322 11-225 (275)
98 TIGR02493 PFLA pyruvate format 99.7 1.2E-14 2.7E-19 129.3 20.9 197 105-313 17-234 (235)
99 PRK11145 pflA pyruvate formate 99.7 1.4E-14 3E-19 129.9 20.5 204 105-320 22-246 (246)
100 TIGR01211 ELP3 histone acetylt 99.7 2.1E-14 4.5E-19 140.1 22.7 187 100-292 65-306 (522)
101 COG1032 Fe-S oxidoreductase [E 99.6 7E-15 1.5E-19 144.0 15.5 185 104-292 199-402 (490)
102 TIGR03822 AblA_like_2 lysine-2 99.6 5.9E-14 1.3E-18 130.3 20.5 191 101-309 86-288 (321)
103 COG2100 Predicted Fe-S oxidore 99.6 5.3E-14 1.2E-18 125.4 18.9 201 109-317 113-331 (414)
104 TIGR02495 NrdG2 anaerobic ribo 99.6 1.8E-13 3.9E-18 117.9 21.1 162 103-276 16-183 (191)
105 COG0535 Predicted Fe-S oxidore 99.6 6.7E-13 1.5E-17 124.4 21.3 195 103-307 19-217 (347)
106 PRK13762 tRNA-modifying enzyme 99.5 9E-13 1.9E-17 122.2 21.3 204 110-326 65-303 (322)
107 COG1180 PflA Pyruvate-formate 99.5 3.4E-13 7.3E-18 121.4 17.9 208 103-324 35-250 (260)
108 PRK13758 anaerobic sulfatase-m 99.5 9.1E-13 2E-17 125.1 21.6 174 108-288 10-197 (370)
109 PRK14456 ribosomal RNA large s 99.5 4.4E-12 9.5E-17 119.2 24.0 204 105-321 123-348 (368)
110 COG2108 Uncharacterized conser 99.5 3.1E-13 6.7E-18 120.9 14.6 173 91-285 22-201 (353)
111 COG1242 Predicted Fe-S oxidore 99.5 2.5E-12 5.5E-17 112.8 18.5 177 108-292 29-229 (312)
112 PRK14459 ribosomal RNA large s 99.5 7E-12 1.5E-16 117.5 22.2 201 107-319 125-352 (373)
113 PRK14455 ribosomal RNA large s 99.5 1.2E-11 2.6E-16 116.1 22.5 202 106-320 112-331 (356)
114 PRK13745 anaerobic sulfatase-m 99.5 3.2E-12 6.9E-17 122.9 18.8 177 103-286 13-204 (412)
115 TIGR00238 KamA family protein. 99.5 4.5E-12 9.7E-17 118.1 19.0 173 103-291 113-295 (331)
116 PRK14469 ribosomal RNA large s 99.5 1.6E-11 3.5E-16 115.0 22.2 201 107-320 105-319 (343)
117 TIGR03821 AblA_like_1 lysine-2 99.5 7.4E-12 1.6E-16 116.1 19.2 188 104-310 97-295 (321)
118 PRK14468 ribosomal RNA large s 99.4 2.6E-11 5.7E-16 113.3 22.2 202 105-319 95-314 (343)
119 TIGR00048 radical SAM enzyme, 99.4 3.3E-11 7.2E-16 113.1 21.8 201 107-320 109-327 (355)
120 PRK14470 ribosomal RNA large s 99.4 4.5E-11 9.7E-16 111.2 22.2 202 104-319 98-315 (336)
121 PRK14460 ribosomal RNA large s 99.4 4.5E-11 9.7E-16 112.1 22.3 200 106-319 105-325 (354)
122 PRK14466 ribosomal RNA large s 99.4 1.2E-10 2.6E-15 108.0 22.6 199 108-319 108-318 (345)
123 TIGR03278 methan_mark_10 putat 99.4 6.5E-11 1.4E-15 112.4 21.4 174 132-317 55-246 (404)
124 PRK14457 ribosomal RNA large s 99.4 9.3E-11 2E-15 109.4 22.0 200 106-319 104-323 (345)
125 TIGR03820 lys_2_3_AblA lysine- 99.4 7.3E-11 1.6E-15 111.8 21.0 166 101-282 106-282 (417)
126 PRK14463 ribosomal RNA large s 99.4 1.3E-10 2.8E-15 108.8 22.3 204 104-320 104-319 (349)
127 COG1243 ELP3 Histone acetyltra 99.4 1.7E-10 3.7E-15 107.8 21.8 202 100-308 64-318 (515)
128 COG0641 AslB Arylsulfatase reg 99.3 9.1E-11 2E-15 110.6 19.0 190 110-307 14-215 (378)
129 KOG4355 Predicted Fe-S oxidore 99.3 7.2E-12 1.6E-16 114.0 11.0 185 103-292 187-386 (547)
130 PRK14467 ribosomal RNA large s 99.3 3.4E-10 7.3E-15 105.8 22.5 202 104-319 100-322 (348)
131 COG1031 Uncharacterized Fe-S o 99.3 8.9E-11 1.9E-15 109.4 16.0 189 103-292 183-412 (560)
132 COG0731 Fe-S oxidoreductases [ 99.3 3.1E-10 6.7E-15 102.3 18.7 169 110-288 30-215 (296)
133 TIGR02494 PFLE_PFLC glycyl-rad 99.3 3.8E-10 8.2E-15 103.9 19.0 155 148-315 126-295 (295)
134 PRK10076 pyruvate formate lyas 99.3 4.4E-10 9.6E-15 98.1 18.1 177 131-320 19-211 (213)
135 PRK14454 ribosomal RNA large s 99.3 8.1E-10 1.8E-14 103.2 20.4 203 105-321 103-321 (342)
136 PRK14462 ribosomal RNA large s 99.3 9.7E-10 2.1E-14 102.7 20.5 202 105-319 112-331 (356)
137 PRK14453 chloramphenicol/florf 99.3 9.2E-10 2E-14 102.9 20.3 205 105-319 102-323 (347)
138 PRK11194 ribosomal RNA large s 99.2 5.2E-09 1.1E-13 98.5 22.4 203 107-320 107-331 (372)
139 PRK14465 ribosomal RNA large s 99.1 1.3E-08 2.8E-13 94.7 22.3 201 105-319 107-322 (342)
140 PRK14464 ribosomal RNA large s 99.1 8.3E-09 1.8E-13 95.9 19.2 203 105-319 98-310 (344)
141 TIGR03365 Bsubt_queE 7-cyano-7 99.1 7.1E-09 1.5E-13 92.4 15.6 136 100-257 19-160 (238)
142 COG1313 PflX Uncharacterized F 99.0 5.2E-09 1.1E-13 92.7 14.0 201 109-321 124-334 (335)
143 COG2516 Biotin synthase-relate 99.0 9E-09 2E-13 92.4 15.4 198 103-308 29-246 (339)
144 PRK14461 ribosomal RNA large s 98.8 8.5E-07 1.8E-11 82.8 20.3 203 107-319 111-345 (371)
145 COG1533 SplB DNA repair photol 98.8 4.9E-07 1.1E-11 82.8 17.9 175 104-282 30-218 (297)
146 COG1244 Predicted Fe-S oxidore 98.8 4.9E-07 1.1E-11 81.5 17.4 174 103-283 47-243 (358)
147 COG1509 KamA Lysine 2,3-aminom 98.8 6E-07 1.3E-11 82.4 17.8 166 101-282 109-286 (369)
148 COG5014 Predicted Fe-S oxidore 98.7 2.4E-07 5.1E-12 76.2 10.4 136 110-258 48-196 (228)
149 COG4277 Predicted DNA-binding 98.6 1.2E-06 2.7E-11 78.0 14.6 205 109-320 60-293 (404)
150 KOG2876 Molybdenum cofactor bi 98.6 5.4E-08 1.2E-12 85.1 5.4 172 104-286 12-190 (323)
151 PF13353 Fer4_12: 4Fe-4S singl 98.6 7.6E-08 1.7E-12 78.3 4.9 82 109-193 11-95 (139)
152 PF13394 Fer4_14: 4Fe-4S singl 98.5 5.5E-08 1.2E-12 77.0 3.3 84 108-193 3-91 (119)
153 cd03174 DRE_TIM_metallolyase D 98.5 9.3E-06 2E-10 73.3 17.3 146 131-282 16-165 (265)
154 COG1625 Fe-S oxidoreductase, r 98.5 3.9E-06 8.4E-11 78.5 14.2 148 166-318 93-253 (414)
155 TIGR02826 RNR_activ_nrdG3 anae 98.3 9.2E-06 2E-10 66.8 11.0 100 103-214 15-117 (147)
156 TIGR02491 NrdG anaerobic ribon 98.3 1.1E-05 2.5E-10 66.9 10.9 86 110-199 22-111 (154)
157 COG0820 Predicted Fe-S-cluster 98.2 0.00027 5.9E-09 65.4 18.8 201 107-318 105-322 (349)
158 PRK11121 nrdG anaerobic ribonu 98.1 1.5E-05 3.2E-10 66.2 8.6 82 110-194 23-109 (154)
159 COG0602 NrdG Organic radical a 98.1 2.1E-05 4.5E-10 68.8 9.2 84 103-193 22-110 (212)
160 TIGR03279 cyano_FeS_chp putati 97.8 0.00055 1.2E-08 65.4 14.7 123 194-322 126-268 (433)
161 cd07939 DRE_TIM_NifV Streptomy 97.7 0.0094 2E-07 53.8 20.0 141 130-282 16-158 (259)
162 cd07948 DRE_TIM_HCS Saccharomy 97.7 0.013 2.8E-07 53.0 20.7 140 131-282 19-160 (262)
163 COG1964 Predicted Fe-S oxidore 97.6 0.0011 2.5E-08 62.7 11.9 140 120-274 78-227 (475)
164 PRK05692 hydroxymethylglutaryl 97.5 0.015 3.2E-07 53.3 19.2 140 131-282 23-174 (287)
165 PRK11858 aksA trans-homoaconit 97.5 0.017 3.7E-07 55.1 19.8 138 130-282 22-164 (378)
166 TIGR02660 nifV_homocitr homoci 97.5 0.017 3.7E-07 54.9 19.7 138 130-282 19-161 (365)
167 PRK08195 4-hyroxy-2-oxovalerat 97.5 0.021 4.5E-07 53.6 19.7 138 130-282 21-163 (337)
168 TIGR02090 LEU1_arch isopropylm 97.5 0.014 3E-07 55.4 18.6 141 130-282 18-160 (363)
169 cd07944 DRE_TIM_HOA_like 4-hyd 97.5 0.032 7E-07 50.5 20.2 136 130-282 16-157 (266)
170 TIGR03217 4OH_2_O_val_ald 4-hy 97.5 0.023 4.9E-07 53.2 19.7 132 130-282 20-162 (333)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 97.4 0.026 5.6E-07 51.0 19.0 135 131-282 19-160 (263)
172 PLN02746 hydroxymethylglutaryl 97.4 0.028 6E-07 52.8 19.3 141 131-282 65-216 (347)
173 cd07940 DRE_TIM_IPMS 2-isoprop 97.4 0.018 4E-07 52.2 17.7 140 131-282 17-162 (268)
174 PF00682 HMGL-like: HMGL-like 97.0 0.012 2.5E-07 52.3 12.3 143 131-282 11-156 (237)
175 cd07938 DRE_TIM_HMGL 3-hydroxy 97.0 0.023 5E-07 51.7 13.7 143 131-282 17-168 (274)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.7 0.13 2.8E-06 46.8 16.4 136 130-282 17-168 (275)
177 PRK14024 phosphoribosyl isomer 96.7 0.17 3.7E-06 45.1 16.9 159 135-322 33-197 (241)
178 cd04731 HisF The cyclase subun 96.6 0.12 2.7E-06 46.0 15.4 163 133-322 26-200 (243)
179 PRK09389 (R)-citramalate synth 96.6 0.2 4.4E-06 49.4 18.1 141 130-282 20-162 (488)
180 PRK00915 2-isopropylmalate syn 96.6 0.22 4.7E-06 49.5 18.4 141 130-282 22-168 (513)
181 cd07941 DRE_TIM_LeuA3 Desulfob 96.6 0.31 6.7E-06 44.3 18.0 143 131-282 17-170 (273)
182 PRK08091 ribulose-phosphate 3- 96.5 0.12 2.7E-06 45.5 14.3 124 133-283 24-147 (228)
183 cd07945 DRE_TIM_CMS Leptospira 96.4 0.33 7.2E-06 44.3 17.0 138 131-282 16-166 (280)
184 PRK14041 oxaloacetate decarbox 96.3 0.6 1.3E-05 45.7 19.1 136 130-282 21-172 (467)
185 PRK00748 1-(5-phosphoribosyl)- 96.3 0.38 8.1E-06 42.4 16.4 131 133-283 29-166 (233)
186 TIGR01108 oadA oxaloacetate de 96.2 0.3 6.6E-06 49.2 17.2 138 130-282 17-168 (582)
187 PRK12331 oxaloacetate decarbox 96.2 0.37 7.9E-06 47.0 17.0 136 130-282 22-173 (448)
188 PRK09282 pyruvate carboxylase 96.2 0.31 6.7E-06 49.3 16.9 136 130-282 22-173 (592)
189 KOG2535 RNA polymerase II elon 96.1 0.82 1.8E-05 42.3 17.6 117 190-311 231-359 (554)
190 PRK12330 oxaloacetate decarbox 96.1 0.31 6.7E-06 48.0 15.8 136 129-282 22-174 (499)
191 TIGR03572 WbuZ glycosyl amidat 96.1 0.42 9.1E-06 42.2 15.6 163 133-322 29-204 (232)
192 PRK01033 imidazole glycerol ph 95.9 0.76 1.6E-05 41.4 16.6 132 133-283 29-172 (258)
193 PRK14040 oxaloacetate decarbox 95.8 0.54 1.2E-05 47.5 16.6 135 130-282 23-174 (593)
194 TIGR00973 leuA_bact 2-isopropy 95.8 1.1 2.3E-05 44.5 18.5 140 131-282 20-165 (494)
195 cd04732 HisA HisA. Phosphorib 95.8 0.41 8.8E-06 42.2 14.2 133 132-283 27-166 (234)
196 TIGR00007 phosphoribosylformim 95.7 1 2.2E-05 39.6 16.5 132 133-283 27-165 (230)
197 COG0159 TrpA Tryptophan syntha 95.6 1.1 2.3E-05 40.4 16.1 111 169-282 4-128 (265)
198 TIGR00735 hisF imidazoleglycer 95.6 1 2.2E-05 40.4 16.3 163 133-322 29-206 (254)
199 PRK14057 epimerase; Provisiona 95.5 0.59 1.3E-05 41.9 14.0 122 132-283 30-161 (254)
200 PRK13585 1-(5-phosphoribosyl)- 95.4 0.88 1.9E-05 40.3 15.1 131 134-283 32-169 (241)
201 PRK12581 oxaloacetate decarbox 95.4 0.6 1.3E-05 45.6 14.6 138 130-282 31-182 (468)
202 KOG4175 Tryptophan synthase al 95.2 1.3 2.9E-05 37.9 14.2 108 167-280 3-127 (268)
203 KOG2550 IMP dehydrogenase/GMP 95.1 0.15 3.3E-06 48.1 9.3 135 134-286 250-386 (503)
204 PF00977 His_biosynth: Histidi 95.1 0.67 1.4E-05 41.0 13.0 164 131-322 26-198 (229)
205 PF04481 DUF561: Protein of un 95.0 1.4 3E-05 38.3 14.1 128 131-282 24-151 (242)
206 PRK02083 imidazole glycerol ph 94.7 2.2 4.8E-05 38.2 15.7 164 132-322 28-204 (253)
207 PRK14042 pyruvate carboxylase 94.7 0.98 2.1E-05 45.6 14.4 139 130-282 22-173 (596)
208 TIGR00977 LeuA_rel 2-isopropyl 94.6 5.5 0.00012 39.8 20.7 144 130-282 19-173 (526)
209 PRK08745 ribulose-phosphate 3- 94.6 2.5 5.5E-05 37.2 15.3 120 133-283 15-139 (223)
210 PRK08883 ribulose-phosphate 3- 94.6 3 6.4E-05 36.7 16.2 108 134-267 12-124 (220)
211 PRK12344 putative alpha-isopro 94.6 5.3 0.00012 39.9 19.2 144 130-282 23-177 (524)
212 PLN02617 imidazole glycerol ph 94.5 3.3 7.1E-05 41.5 17.5 176 131-322 264-489 (538)
213 PLN03228 methylthioalkylmalate 94.5 3.2 7E-05 41.1 17.3 137 131-282 103-258 (503)
214 TIGR01303 IMP_DH_rel_1 IMP deh 94.3 0.64 1.4E-05 45.7 12.0 135 134-286 224-360 (475)
215 PRK07807 inosine 5-monophospha 94.3 0.55 1.2E-05 46.2 11.4 133 134-286 226-362 (479)
216 PRK05096 guanosine 5'-monophos 94.3 0.59 1.3E-05 43.4 10.8 132 137-286 110-245 (346)
217 PRK06806 fructose-bisphosphate 94.3 4.2 9.2E-05 37.1 16.8 169 133-322 28-207 (281)
218 PRK11572 copper homeostasis pr 94.1 2.9 6.3E-05 37.3 14.5 122 137-283 76-198 (248)
219 COG0106 HisA Phosphoribosylfor 94.0 4.2 9E-05 36.1 15.4 162 131-322 28-198 (241)
220 cd02810 DHOD_DHPD_FMN Dihydroo 94.0 3.1 6.7E-05 37.9 15.2 150 166-322 82-250 (289)
221 TIGR01496 DHPS dihydropteroate 94.0 2.1 4.6E-05 38.5 13.8 183 130-323 19-243 (257)
222 TIGR01305 GMP_reduct_1 guanosi 93.9 0.8 1.7E-05 42.6 10.9 132 137-286 109-244 (343)
223 PRK06552 keto-hydroxyglutarate 93.7 3.3 7.1E-05 36.2 14.0 68 132-211 23-93 (213)
224 PRK14114 1-(5-phosphoribosyl)- 93.7 4.9 0.00011 35.8 15.4 160 132-322 28-195 (241)
225 PF00478 IMPDH: IMP dehydrogen 93.5 2.6 5.6E-05 39.7 13.9 133 134-286 107-243 (352)
226 PRK13587 1-(5-phosphoribosyl)- 93.5 5.1 0.00011 35.5 17.1 128 134-282 31-167 (234)
227 COG0119 LeuA Isopropylmalate/h 93.4 1.6 3.4E-05 42.1 12.5 143 130-282 20-165 (409)
228 PF00834 Ribul_P_3_epim: Ribul 93.3 1.1 2.5E-05 38.7 10.5 154 132-316 10-165 (201)
229 PRK15452 putative protease; Pr 93.1 8.7 0.00019 37.5 17.3 74 137-213 13-96 (443)
230 PRK05718 keto-hydroxyglutarate 93.0 2.5 5.4E-05 36.9 12.2 76 132-219 25-103 (212)
231 PF01729 QRPTase_C: Quinolinat 92.8 0.56 1.2E-05 39.5 7.6 67 137-214 90-156 (169)
232 cd04723 HisA_HisF Phosphoribos 92.8 4.9 0.00011 35.5 14.1 78 133-217 34-111 (233)
233 cd00945 Aldolase_Class_I Class 92.8 4.3 9.3E-05 34.2 13.4 129 132-282 11-148 (201)
234 PRK13111 trpA tryptophan synth 92.8 7.2 0.00016 35.2 15.4 16 228-243 70-85 (258)
235 PF00290 Trp_syntA: Tryptophan 92.7 2.8 6E-05 37.8 12.4 16 228-243 68-83 (259)
236 TIGR03249 KdgD 5-dehydro-4-deo 92.6 3.6 7.8E-05 37.8 13.4 76 197-282 30-105 (296)
237 cd00950 DHDPS Dihydrodipicolin 92.5 1.8 3.9E-05 39.4 11.3 76 197-282 25-101 (284)
238 COG1856 Uncharacterized homolo 92.5 3.1 6.7E-05 36.4 11.7 137 137-282 100-251 (275)
239 PRK06801 hypothetical protein; 92.5 8.5 0.00018 35.2 15.4 171 133-322 28-210 (286)
240 COG0107 HisF Imidazoleglycerol 92.4 2 4.3E-05 37.7 10.4 171 132-322 28-206 (256)
241 cd00739 DHPS DHPS subgroup of 92.3 2.6 5.7E-05 37.9 11.8 182 130-322 20-244 (257)
242 cd07942 DRE_TIM_LeuA Mycobacte 92.0 7.5 0.00016 35.6 14.5 133 131-275 20-168 (284)
243 PRK09722 allulose-6-phosphate 91.9 8.5 0.00018 34.0 16.0 119 134-283 15-137 (229)
244 PLN02446 (5-phosphoribosyl)-5- 91.9 9.4 0.0002 34.4 15.2 163 134-322 43-214 (262)
245 cd00452 KDPG_aldolase KDPG and 91.8 7.4 0.00016 33.2 16.6 111 132-283 14-124 (190)
246 TIGR00640 acid_CoA_mut_C methy 91.7 2.4 5.2E-05 34.1 9.8 68 137-212 43-111 (132)
247 TIGR00677 fadh2_euk methylenet 91.7 6.7 0.00014 35.8 13.9 114 133-263 73-203 (281)
248 COG0329 DapA Dihydrodipicolina 91.7 4.4 9.6E-05 37.3 12.8 103 196-316 28-131 (299)
249 PRK13586 1-(5-phosphoribosyl)- 91.6 9.2 0.0002 33.8 15.2 130 134-283 30-166 (232)
250 PRK08005 epimerase; Validated 91.5 4 8.7E-05 35.6 11.6 120 133-283 12-135 (210)
251 TIGR00559 pdxJ pyridoxine 5'-p 91.4 3.2 7E-05 36.6 10.8 105 166-286 109-215 (237)
252 PLN02321 2-isopropylmalate syn 91.4 6.8 0.00015 39.9 14.7 141 131-282 105-259 (632)
253 COG0826 Collagenase and relate 91.4 1.7 3.6E-05 41.0 9.8 83 195-283 15-99 (347)
254 TIGR01859 fruc_bis_ald_ fructo 91.4 11 0.00024 34.4 16.4 169 133-322 26-207 (282)
255 PRK09140 2-dehydro-3-deoxy-6-p 91.2 9 0.0002 33.3 13.6 69 132-212 20-89 (206)
256 PTZ00170 D-ribulose-5-phosphat 91.1 2.2 4.8E-05 37.7 9.8 96 133-251 18-118 (228)
257 PF07745 Glyco_hydro_53: Glyco 91.1 11 0.00025 35.2 14.8 139 137-283 27-205 (332)
258 cd00954 NAL N-Acetylneuraminic 91.1 4.7 0.0001 36.9 12.3 76 197-282 25-102 (288)
259 PRK05265 pyridoxine 5'-phospha 91.0 3.8 8.3E-05 36.2 10.9 106 165-286 111-216 (239)
260 PLN02540 methylenetetrahydrofo 90.9 5.6 0.00012 39.9 13.3 49 132-180 71-125 (565)
261 PRK12290 thiE thiamine-phospha 90.9 10 0.00023 36.7 14.6 144 138-322 221-371 (437)
262 cd00952 CHBPH_aldolase Trans-o 90.9 4.5 9.8E-05 37.4 12.1 76 197-282 33-109 (309)
263 PRK03170 dihydrodipicolinate s 90.8 3.7 8E-05 37.6 11.4 76 197-282 26-102 (292)
264 TIGR00674 dapA dihydrodipicoli 90.7 4.1 8.9E-05 37.1 11.6 76 197-282 23-99 (285)
265 PRK07428 nicotinate-nucleotide 90.7 2.2 4.8E-05 39.1 9.6 67 137-214 206-272 (288)
266 cd07947 DRE_TIM_Re_CS Clostrid 90.6 9.5 0.00021 34.8 13.7 133 132-282 19-169 (279)
267 PRK07896 nicotinate-nucleotide 90.5 2.2 4.7E-05 39.1 9.4 67 137-214 209-275 (289)
268 PRK05848 nicotinate-nucleotide 90.5 2 4.4E-05 39.0 9.1 67 137-214 192-258 (273)
269 PRK12737 gatY tagatose-bisphos 90.5 14 0.0003 33.8 16.4 136 133-282 28-174 (284)
270 PRK03620 5-dehydro-4-deoxygluc 90.4 5.5 0.00012 36.8 12.2 76 197-282 32-107 (303)
271 TIGR03128 RuMP_HxlA 3-hexulose 90.4 11 0.00023 32.4 13.8 120 132-283 10-133 (206)
272 cd00408 DHDPS-like Dihydrodipi 90.4 4.8 0.0001 36.5 11.7 76 197-282 22-98 (281)
273 cd00003 PNPsynthase Pyridoxine 90.4 4.9 0.00011 35.4 11.0 105 165-285 108-213 (234)
274 TIGR00262 trpA tryptophan synt 90.2 5.5 0.00012 35.8 11.6 139 133-275 23-196 (256)
275 PRK11613 folP dihydropteroate 90.1 7.6 0.00016 35.5 12.5 138 131-275 35-207 (282)
276 TIGR03849 arch_ComA phosphosul 90.1 8.3 0.00018 34.2 12.3 114 148-282 25-153 (237)
277 COG5016 Pyruvate/oxaloacetate 90.1 3.7 8.1E-05 39.0 10.5 129 130-281 93-229 (472)
278 cd02071 MM_CoA_mut_B12_BD meth 90.0 4 8.7E-05 32.1 9.5 68 137-212 40-108 (122)
279 PF06180 CbiK: Cobalt chelatas 90.0 1.2 2.6E-05 40.2 7.1 45 168-212 19-77 (262)
280 TIGR02146 LysS_fung_arch homoc 89.8 17 0.00036 33.9 17.3 139 132-282 18-158 (344)
281 TIGR01163 rpe ribulose-phospha 89.8 12 0.00026 32.1 16.2 75 133-213 10-86 (210)
282 TIGR00262 trpA tryptophan synt 89.7 15 0.00032 33.1 15.8 53 228-282 68-121 (256)
283 COG5016 Pyruvate/oxaloacetate 89.7 2.5 5.5E-05 40.1 9.1 138 131-282 25-175 (472)
284 PRK08195 4-hyroxy-2-oxovalerat 89.7 7.3 0.00016 36.6 12.5 107 132-243 142-264 (337)
285 PRK02227 hypothetical protein; 89.7 11 0.00024 33.4 12.7 166 127-312 60-234 (238)
286 PRK06843 inosine 5-monophospha 89.7 4.8 0.0001 38.7 11.3 133 136-286 154-288 (404)
287 TIGR01334 modD putative molybd 89.6 2.9 6.2E-05 38.1 9.4 67 137-214 198-264 (277)
288 COG0800 Eda 2-keto-3-deoxy-6-p 89.6 5.3 0.00012 34.7 10.5 96 132-239 23-124 (211)
289 cd04739 DHOD_like Dihydroorota 89.4 18 0.00039 33.7 14.9 169 133-319 111-296 (325)
290 PRK05265 pyridoxine 5'-phospha 89.4 15 0.00032 32.6 14.0 160 135-320 25-189 (239)
291 PLN02334 ribulose-phosphate 3- 89.4 14 0.00031 32.4 15.3 156 134-322 20-181 (229)
292 PF05853 DUF849: Prokaryotic p 89.3 2 4.4E-05 39.0 8.2 143 129-274 21-196 (272)
293 PF03740 PdxJ: Pyridoxal phosp 89.2 1.9 4.2E-05 38.1 7.6 107 165-286 109-217 (239)
294 PF01261 AP_endonuc_2: Xylose 89.2 3.9 8.5E-05 34.6 9.7 113 199-320 1-130 (213)
295 PTZ00314 inosine-5'-monophosph 89.1 7.1 0.00015 38.7 12.5 131 136-286 242-376 (495)
296 PRK04147 N-acetylneuraminate l 89.0 7 0.00015 35.8 11.7 18 230-249 84-101 (293)
297 PRK06096 molybdenum transport 89.0 3.3 7.2E-05 37.8 9.3 67 137-214 199-265 (284)
298 TIGR02313 HpaI-NOT-DapA 2,4-di 88.9 8.2 0.00018 35.4 12.1 26 255-280 73-99 (294)
299 TIGR01858 tag_bisphos_ald clas 88.9 18 0.00039 33.0 16.2 136 133-282 26-172 (282)
300 cd04724 Tryptophan_synthase_al 88.9 13 0.00029 33.0 13.1 20 262-281 115-134 (242)
301 cd00951 KDGDH 5-dehydro-4-deox 88.8 8.2 0.00018 35.3 12.0 50 230-282 51-100 (289)
302 PRK09195 gatY tagatose-bisphos 88.7 19 0.00041 33.0 16.1 136 133-282 28-174 (284)
303 TIGR00683 nanA N-acetylneurami 88.7 8.1 0.00018 35.4 11.8 27 254-280 73-100 (290)
304 PF01136 Peptidase_U32: Peptid 88.7 3 6.4E-05 36.7 8.7 69 134-216 2-70 (233)
305 TIGR01303 IMP_DH_rel_1 IMP deh 88.6 27 0.00058 34.5 16.9 161 136-322 165-335 (475)
306 PRK09196 fructose-1,6-bisphosp 88.6 22 0.00047 33.5 14.7 178 133-321 28-232 (347)
307 PRK08185 hypothetical protein; 88.3 20 0.00044 32.8 16.9 169 133-322 23-205 (283)
308 TIGR00676 fadh2 5,10-methylene 88.3 18 0.0004 32.7 13.8 110 132-258 71-192 (272)
309 PF06180 CbiK: Cobalt chelatas 88.3 1.2 2.5E-05 40.3 5.8 174 133-319 57-237 (262)
310 TIGR02320 PEP_mutase phosphoen 88.3 20 0.00044 32.8 14.6 133 147-282 38-188 (285)
311 PRK07565 dihydroorotate dehydr 88.1 23 0.00049 33.1 15.2 169 133-319 113-298 (334)
312 PRK08385 nicotinate-nucleotide 88.1 4.7 0.0001 36.7 9.6 67 137-214 192-260 (278)
313 COG0269 SgbH 3-hexulose-6-phos 88.0 17 0.00038 31.6 13.2 117 137-283 19-137 (217)
314 cd07943 DRE_TIM_HOA 4-hydroxy- 88.0 7.9 0.00017 34.8 11.2 76 132-212 139-216 (263)
315 PRK12999 pyruvate carboxylase; 87.9 37 0.0008 37.4 17.8 137 132-282 553-710 (1146)
316 PRK07535 methyltetrahydrofolat 87.9 11 0.00023 34.1 11.9 135 131-275 22-186 (261)
317 PRK15452 putative protease; Pr 87.8 3 6.5E-05 40.7 8.8 83 195-283 12-96 (443)
318 PF04476 DUF556: Protein of un 87.6 19 0.00042 31.8 15.2 164 127-311 60-234 (235)
319 PRK12738 kbaY tagatose-bisphos 87.6 23 0.00049 32.5 16.9 136 133-282 28-174 (286)
320 cd03412 CbiK_N Anaerobic cobal 87.6 13 0.00027 29.6 11.3 95 166-274 16-125 (127)
321 cd04724 Tryptophan_synthase_al 87.6 8.6 0.00019 34.2 11.0 79 133-212 13-110 (242)
322 PLN02591 tryptophan synthase 87.5 16 0.00034 32.8 12.5 15 228-242 60-74 (250)
323 COG0685 MetF 5,10-methylenetet 87.5 6.8 0.00015 36.0 10.5 110 132-258 90-210 (291)
324 cd00537 MTHFR Methylenetetrahy 87.5 16 0.00034 33.1 12.8 117 132-265 71-204 (274)
325 PF01081 Aldolase: KDPG and KH 87.5 2.3 5.1E-05 36.6 7.0 68 132-211 18-85 (196)
326 PRK10550 tRNA-dihydrouridine s 87.4 19 0.00041 33.4 13.5 138 131-284 72-225 (312)
327 TIGR01182 eda Entner-Doudoroff 87.4 3.3 7.1E-05 35.9 7.9 67 132-210 18-84 (204)
328 CHL00200 trpA tryptophan synth 87.2 22 0.00048 32.1 14.6 16 306-321 159-175 (263)
329 PF00701 DHDPS: Dihydrodipicol 87.1 8.3 0.00018 35.2 10.9 77 196-282 25-102 (289)
330 PRK06015 keto-hydroxyglutarate 87.1 3.2 6.9E-05 35.9 7.6 68 132-211 14-81 (201)
331 PRK07709 fructose-bisphosphate 86.9 25 0.00053 32.2 17.2 138 133-282 28-175 (285)
332 PRK13210 putative L-xylulose 5 86.7 4.2 9.1E-05 36.7 8.7 118 196-320 19-151 (284)
333 PRK05581 ribulose-phosphate 3- 86.7 10 0.00022 32.8 10.8 77 133-214 15-92 (220)
334 cd06556 ICL_KPHMT Members of t 86.6 15 0.00032 32.8 11.8 87 194-282 20-108 (240)
335 TIGR01302 IMP_dehydrog inosine 86.6 6.8 0.00015 38.3 10.6 132 135-286 224-359 (450)
336 COG3142 CutC Uncharacterized p 86.5 21 0.00047 31.4 12.2 123 137-282 76-199 (241)
337 TIGR00284 dihydropteroate synt 86.4 15 0.00032 36.5 12.7 170 134-323 165-352 (499)
338 PRK05835 fructose-bisphosphate 86.1 28 0.00061 32.2 17.0 173 133-321 27-210 (307)
339 cd04740 DHOD_1B_like Dihydroor 85.9 27 0.00059 31.8 14.7 167 133-319 101-289 (296)
340 PRK07998 gatY putative fructos 85.8 28 0.00061 31.8 14.5 135 134-282 29-172 (283)
341 PRK08318 dihydropyrimidine deh 85.7 19 0.00042 34.8 13.2 141 133-283 112-282 (420)
342 cd00377 ICL_PEPM Members of th 85.7 25 0.00055 31.2 14.7 141 139-282 21-179 (243)
343 cd00331 IGPS Indole-3-glycerol 85.5 23 0.0005 30.7 18.4 121 131-283 28-148 (217)
344 PF02581 TMP-TENI: Thiamine mo 85.5 21 0.00045 30.1 13.9 143 133-322 11-156 (180)
345 cd00423 Pterin_binding Pterin 85.3 21 0.00046 32.0 12.4 75 131-210 21-100 (258)
346 COG0042 tRNA-dihydrouridine sy 85.2 15 0.00032 34.3 11.6 136 131-283 76-228 (323)
347 PRK07114 keto-hydroxyglutarate 85.2 15 0.00033 32.2 11.0 100 132-239 25-130 (222)
348 cd02801 DUS_like_FMN Dihydrour 85.1 18 0.00039 31.5 11.7 86 196-283 70-158 (231)
349 PRK07565 dihydroorotate dehydr 85.1 32 0.00069 32.1 13.9 148 166-322 86-246 (334)
350 cd00953 KDG_aldolase KDG (2-ke 85.1 21 0.00046 32.4 12.4 44 229-274 75-120 (279)
351 cd00947 TBP_aldolase_IIB Tagat 85.1 30 0.00065 31.5 16.6 136 133-282 23-167 (276)
352 cd04740 DHOD_1B_like Dihydroor 85.0 30 0.00066 31.5 15.3 121 196-323 105-239 (296)
353 TIGR02129 hisA_euk phosphoribo 85.0 29 0.00062 31.2 16.5 159 133-322 36-208 (253)
354 TIGR00737 nifR3_yhdG putative 84.8 20 0.00043 33.3 12.3 118 197-322 79-199 (319)
355 PRK07259 dihydroorotate dehydr 84.7 20 0.00043 32.9 12.2 167 132-318 102-291 (301)
356 PRK13399 fructose-1,6-bisphosp 84.7 36 0.00078 32.1 15.7 176 133-321 28-232 (347)
357 TIGR01235 pyruv_carbox pyruvat 84.5 30 0.00065 38.0 15.0 135 134-282 553-708 (1143)
358 COG4822 CbiK Cobalamin biosynt 84.5 10 0.00022 33.0 9.1 172 134-318 60-232 (265)
359 TIGR00735 hisF imidazoleglycer 84.4 13 0.00028 33.3 10.6 100 132-250 153-253 (254)
360 PRK04452 acetyl-CoA decarbonyl 84.4 35 0.00076 31.8 14.0 153 138-318 79-239 (319)
361 TIGR01769 GGGP geranylgeranylg 84.4 14 0.0003 32.1 10.2 98 101-213 105-205 (205)
362 cd00381 IMPDH IMPDH: The catal 84.4 8.8 0.00019 35.8 9.7 133 135-286 94-229 (325)
363 PRK13111 trpA tryptophan synth 84.2 22 0.00047 32.0 11.9 121 136-283 106-228 (258)
364 cd07945 DRE_TIM_CMS Leptospira 84.2 24 0.00053 32.1 12.3 79 132-214 145-224 (280)
365 PLN02591 tryptophan synthase 83.9 32 0.00069 30.9 12.9 123 136-284 95-219 (250)
366 PRK13209 L-xylulose 5-phosphat 83.9 7.8 0.00017 35.0 9.1 82 196-282 24-118 (283)
367 cd07939 DRE_TIM_NifV Streptomy 83.8 24 0.00052 31.6 12.1 77 131-213 136-214 (259)
368 COG2185 Sbm Methylmalonyl-CoA 83.7 7.4 0.00016 31.7 7.7 69 137-212 53-121 (143)
369 PLN02424 ketopantoate hydroxym 83.7 20 0.00044 33.4 11.5 104 173-282 27-133 (332)
370 PRK12857 fructose-1,6-bisphosp 83.6 35 0.00077 31.2 16.3 136 133-282 28-174 (284)
371 cd03174 DRE_TIM_metallolyase D 83.6 19 0.00041 32.0 11.4 78 131-213 143-222 (265)
372 TIGR00559 pdxJ pyridoxine 5'-p 83.2 32 0.0007 30.4 13.1 129 134-283 21-151 (237)
373 PRK07107 inosine 5-monophospha 83.0 8.2 0.00018 38.3 9.3 75 134-217 241-316 (502)
374 cd04731 HisF The cyclase subun 82.9 16 0.00034 32.3 10.5 93 132-238 147-240 (243)
375 cd01299 Met_dep_hydrolase_A Me 82.8 28 0.00061 32.2 12.6 76 132-213 118-200 (342)
376 PLN02417 dihydrodipicolinate s 82.8 21 0.00044 32.5 11.3 18 230-249 81-98 (280)
377 cd07940 DRE_TIM_IPMS 2-isoprop 82.8 24 0.00051 31.8 11.7 78 131-213 140-221 (268)
378 TIGR00542 hxl6Piso_put hexulos 82.8 10 0.00023 34.2 9.4 82 196-282 19-113 (279)
379 COG0036 Rpe Pentose-5-phosphat 82.7 33 0.00071 30.1 12.1 78 133-215 15-93 (220)
380 TIGR03217 4OH_2_O_val_ald 4-hy 82.6 25 0.00054 32.9 12.0 76 132-212 141-219 (333)
381 PRK00278 trpC indole-3-glycero 82.5 37 0.0008 30.6 14.7 120 133-284 69-188 (260)
382 PRK07315 fructose-bisphosphate 82.4 40 0.00087 31.0 14.6 168 133-322 28-209 (293)
383 PRK14847 hypothetical protein; 82.3 44 0.00095 31.3 15.7 137 131-279 51-204 (333)
384 KOG0564 5,10-methylenetetrahyd 82.3 8.7 0.00019 37.5 8.7 121 133-270 91-230 (590)
385 TIGR01521 FruBisAldo_II_B fruc 82.1 46 0.00099 31.4 15.2 178 133-321 26-230 (347)
386 PRK09997 hydroxypyruvate isome 82.0 17 0.00036 32.4 10.3 41 169-211 17-58 (258)
387 PRK13398 3-deoxy-7-phosphohept 82.0 9.1 0.0002 34.7 8.5 66 252-321 28-97 (266)
388 PLN02334 ribulose-phosphate 3- 81.8 16 0.00035 32.1 10.0 76 135-213 126-202 (229)
389 PRK00043 thiE thiamine-phospha 81.6 32 0.0007 29.4 14.0 145 134-322 21-167 (212)
390 cd00956 Transaldolase_FSA Tran 81.5 32 0.0007 29.9 11.6 83 137-222 112-194 (211)
391 TIGR03572 WbuZ glycosyl amidat 81.4 7.6 0.00016 34.1 7.8 75 133-213 152-227 (232)
392 PRK10415 tRNA-dihydrouridine s 81.4 23 0.00051 32.9 11.3 74 135-213 150-224 (321)
393 PRK05692 hydroxymethylglutaryl 81.3 9.3 0.0002 35.0 8.5 81 131-216 152-234 (287)
394 PRK05437 isopentenyl pyrophosp 81.3 23 0.00049 33.5 11.3 108 169-284 107-218 (352)
395 PF01207 Dus: Dihydrouridine s 81.2 11 0.00023 35.0 9.0 119 197-323 70-191 (309)
396 PF00682 HMGL-like: HMGL-like 81.0 8.9 0.00019 33.7 8.1 79 131-214 134-214 (237)
397 PRK08999 hypothetical protein; 81.0 32 0.00069 31.6 12.1 61 253-322 226-287 (312)
398 cd07938 DRE_TIM_HMGL 3-hydroxy 80.9 8.3 0.00018 35.1 8.0 79 132-214 147-226 (274)
399 CHL00200 trpA tryptophan synth 80.8 43 0.00093 30.3 13.5 123 136-285 108-233 (263)
400 PRK07455 keto-hydroxyglutarate 80.8 34 0.00074 29.1 15.0 69 132-212 22-90 (187)
401 PRK13397 3-deoxy-7-phosphohept 80.7 11 0.00024 33.8 8.4 66 253-321 17-85 (250)
402 PRK05567 inosine 5'-monophosph 80.7 17 0.00037 35.9 10.7 131 136-286 229-363 (486)
403 PRK09517 multifunctional thiam 80.6 50 0.0011 34.7 14.6 148 135-322 20-173 (755)
404 PRK08005 epimerase; Validated 80.5 35 0.00077 29.7 11.4 78 132-213 114-191 (210)
405 TIGR02764 spore_ybaN_pdaB poly 80.4 34 0.00074 28.8 11.6 79 190-282 104-187 (191)
406 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.4 38 0.00082 30.7 12.1 78 131-214 146-225 (275)
407 PRK13125 trpA tryptophan synth 80.4 42 0.0009 29.8 13.0 70 166-243 169-238 (244)
408 cd00429 RPE Ribulose-5-phospha 80.3 36 0.00077 29.0 17.9 77 132-213 10-87 (211)
409 cd07941 DRE_TIM_LeuA3 Desulfob 80.1 12 0.00026 34.0 8.7 77 132-213 149-227 (273)
410 TIGR01037 pyrD_sub1_fam dihydr 79.9 48 0.001 30.3 15.3 82 197-284 107-190 (300)
411 PRK08610 fructose-bisphosphate 79.9 49 0.0011 30.3 15.9 170 133-320 28-208 (286)
412 PRK09432 metF 5,10-methylenete 79.8 26 0.00057 32.2 10.9 110 132-258 95-211 (296)
413 PRK13585 1-(5-phosphoribosyl)- 79.8 18 0.00039 31.9 9.7 73 135-213 150-222 (241)
414 cd03316 MR_like Mandelate race 79.7 43 0.00092 31.4 12.7 151 132-318 139-294 (357)
415 PRK01254 hypothetical protein; 79.7 19 0.00041 36.9 10.5 106 135-250 469-589 (707)
416 TIGR03822 AblA_like_2 lysine-2 79.7 53 0.0011 30.6 13.6 139 166-324 121-267 (321)
417 PRK12331 oxaloacetate decarbox 79.7 62 0.0014 31.7 14.0 76 131-212 92-173 (448)
418 PRK05458 guanosine 5'-monophos 79.6 17 0.00036 34.0 9.6 133 135-286 97-233 (326)
419 cd00953 KDG_aldolase KDG (2-ke 79.5 7 0.00015 35.6 7.1 80 130-212 16-97 (279)
420 COG0269 SgbH 3-hexulose-6-phos 79.4 42 0.00091 29.3 14.4 122 139-286 72-195 (217)
421 PRK12330 oxaloacetate decarbox 79.3 36 0.00079 33.7 12.2 77 132-212 153-231 (499)
422 COG0106 HisA Phosphoribosylfor 79.2 46 0.001 29.6 12.1 95 130-239 143-239 (241)
423 PF01116 F_bP_aldolase: Fructo 79.1 26 0.00057 32.1 10.6 170 134-322 28-212 (287)
424 PRK04128 1-(5-phosphoribosyl)- 79.0 38 0.00083 29.8 11.4 75 135-216 31-105 (228)
425 PF00809 Pterin_bind: Pterin b 79.0 5.2 0.00011 34.8 5.8 75 133-211 18-97 (210)
426 TIGR00007 phosphoribosylformim 79.0 13 0.00029 32.4 8.5 74 134-213 145-218 (230)
427 PRK00115 hemE uroporphyrinogen 78.9 57 0.0012 30.5 14.1 72 139-213 191-267 (346)
428 cd01573 modD_like ModD; Quinol 78.8 18 0.00039 32.9 9.4 66 137-213 193-258 (272)
429 PLN02274 inosine-5'-monophosph 78.8 74 0.0016 31.7 17.0 127 136-282 184-316 (505)
430 cd07944 DRE_TIM_HOA_like 4-hyd 78.7 42 0.00092 30.3 11.8 76 132-212 136-214 (266)
431 cd02803 OYE_like_FMN_family Ol 78.7 55 0.0012 30.2 13.8 128 197-324 145-290 (327)
432 KOG3111 D-ribulose-5-phosphate 78.7 42 0.00091 28.8 11.5 78 134-216 17-97 (224)
433 PLN02274 inosine-5'-monophosph 78.7 15 0.00032 36.6 9.4 135 134-286 247-383 (505)
434 PRK08091 ribulose-phosphate 3- 78.6 43 0.00093 29.6 11.4 78 132-213 126-207 (228)
435 TIGR01370 cysRS possible cyste 78.5 40 0.00086 31.4 11.6 119 197-322 151-304 (315)
436 cd01568 QPRTase_NadC Quinolina 78.5 11 0.00024 34.2 7.9 65 137-213 191-255 (269)
437 PRK02261 methylaspartate mutas 78.5 33 0.00072 27.6 11.5 71 137-212 44-118 (137)
438 TIGR00970 leuA_yeast 2-isoprop 78.4 80 0.0017 31.9 16.1 136 131-278 45-199 (564)
439 TIGR00620 sporelyase spore pho 78.3 44 0.00095 28.9 11.1 102 167-276 10-116 (199)
440 PRK06106 nicotinate-nucleotide 78.3 12 0.00025 34.3 7.9 64 137-214 204-267 (281)
441 PRK14042 pyruvate carboxylase 78.3 81 0.0018 32.1 14.6 74 131-212 92-173 (596)
442 PRK06978 nicotinate-nucleotide 78.3 14 0.00029 34.0 8.4 64 137-214 215-278 (294)
443 cd04739 DHOD_like Dihydroorota 78.2 59 0.0013 30.3 13.0 112 166-286 84-198 (325)
444 PRK12656 fructose-6-phosphate 78.1 48 0.001 29.2 12.5 82 138-222 117-198 (222)
445 KOG2368 Hydroxymethylglutaryl- 78.0 49 0.0011 29.2 11.5 181 133-321 38-244 (316)
446 PF03932 CutC: CutC family; I 77.9 7 0.00015 33.8 6.1 123 136-282 74-198 (201)
447 PRK07028 bifunctional hexulose 77.8 71 0.0015 31.0 15.4 121 132-283 14-138 (430)
448 COG0352 ThiE Thiamine monophos 77.7 47 0.001 28.9 15.5 163 114-322 2-165 (211)
449 cd00959 DeoC 2-deoxyribose-5-p 77.5 46 0.00099 28.6 18.8 160 132-322 15-181 (203)
450 TIGR00238 KamA family protein. 77.4 32 0.0007 32.1 11.0 138 166-323 144-289 (331)
451 COG3589 Uncharacterized conser 77.2 37 0.00081 31.7 10.8 146 134-282 16-176 (360)
452 COG0113 HemB Delta-aminolevuli 77.1 14 0.00029 34.0 7.8 83 122-212 49-138 (330)
453 cd03329 MR_like_4 Mandelate ra 77.0 68 0.0015 30.3 14.3 55 132-191 143-198 (368)
454 PF05913 DUF871: Bacterial pro 77.0 18 0.00038 34.3 9.0 181 133-322 13-220 (357)
455 TIGR01919 hisA-trpF 1-(5-phosp 76.8 54 0.0012 29.2 16.9 128 135-283 32-169 (243)
456 COG0854 PdxJ Pyridoxal phospha 76.8 25 0.00053 30.8 9.0 92 166-268 110-203 (243)
457 PRK09016 quinolinate phosphori 76.7 15 0.00032 33.8 8.2 64 137-214 218-281 (296)
458 COG1625 Fe-S oxidoreductase, r 76.5 20 0.00043 34.4 9.1 143 110-252 82-255 (414)
459 PRK08745 ribulose-phosphate 3- 76.4 53 0.0012 28.9 12.9 79 131-213 117-199 (223)
460 PRK08185 hypothetical protein; 76.4 62 0.0013 29.6 13.0 133 137-286 81-231 (283)
461 TIGR00875 fsa_talC_mipB fructo 76.3 52 0.0011 28.7 11.7 82 138-222 113-194 (213)
462 PF00977 His_biosynth: Histidi 76.2 19 0.00041 31.7 8.7 75 133-213 146-220 (229)
463 PRK10415 tRNA-dihydrouridine s 76.2 46 0.001 30.9 11.6 86 198-284 82-170 (321)
464 COG0157 NadC Nicotinate-nucleo 76.0 21 0.00047 32.3 8.8 66 137-214 198-263 (280)
465 cd06543 GH18_PF-ChiA-like PF-C 76.0 65 0.0014 29.6 12.7 143 142-287 99-264 (294)
466 TIGR02320 PEP_mutase phosphoen 76.0 34 0.00074 31.3 10.4 77 134-218 169-245 (285)
467 PRK10550 tRNA-dihydrouridine s 75.9 54 0.0012 30.4 11.9 119 197-322 79-201 (312)
468 PF02219 MTHFR: Methylenetetra 75.8 17 0.00037 33.2 8.5 108 132-254 83-207 (287)
469 PRK03739 2-isopropylmalate syn 75.5 93 0.002 31.4 14.2 131 131-274 49-196 (552)
470 PRK06559 nicotinate-nucleotide 75.4 19 0.0004 33.1 8.4 64 137-214 207-270 (290)
471 TIGR01306 GMP_reduct_2 guanosi 75.1 26 0.00057 32.6 9.5 130 137-286 96-230 (321)
472 PRK13587 1-(5-phosphoribosyl)- 75.0 28 0.0006 30.8 9.4 76 132-213 146-221 (234)
473 TIGR00737 nifR3_yhdG putative 75.0 51 0.0011 30.5 11.6 73 135-213 148-222 (319)
474 PRK05742 nicotinate-nucleotide 75.0 20 0.00044 32.6 8.6 64 137-214 199-262 (277)
475 TIGR00742 yjbN tRNA dihydrouri 74.8 69 0.0015 29.8 12.3 122 197-322 71-202 (318)
476 cd04728 ThiG Thiazole synthase 74.8 62 0.0014 28.9 13.4 157 132-324 74-236 (248)
477 cd04732 HisA HisA. Phosphorib 74.4 18 0.00039 31.6 8.1 76 132-213 144-219 (234)
478 TIGR02317 prpB methylisocitrat 74.4 70 0.0015 29.3 17.8 138 140-282 26-180 (285)
479 COG0809 QueA S-adenosylmethion 74.3 24 0.00051 32.9 8.7 127 189-322 182-337 (348)
480 TIGR00126 deoC deoxyribose-pho 74.3 59 0.0013 28.3 17.9 161 131-322 15-182 (211)
481 COG2875 CobM Precorrin-4 methy 74.1 53 0.0011 29.1 10.4 45 130-179 58-102 (254)
482 PLN02495 oxidoreductase, actin 74.1 38 0.00083 32.4 10.6 117 165-286 96-217 (385)
483 PRK11815 tRNA-dihydrouridine s 74.1 78 0.0017 29.6 12.8 122 197-322 81-212 (333)
484 PRK09856 fructoselysine 3-epim 74.0 14 0.00031 33.0 7.5 14 198-211 52-65 (275)
485 PRK06543 nicotinate-nucleotide 74.0 21 0.00045 32.6 8.3 64 137-214 203-266 (281)
486 cd02072 Glm_B12_BD B12 binding 73.9 43 0.00093 26.7 9.2 70 136-211 39-113 (128)
487 cd00958 DhnA Class I fructose- 73.9 52 0.0011 28.8 10.9 128 133-285 75-216 (235)
488 COG3010 NanE Putative N-acetyl 73.8 32 0.0007 29.8 8.9 150 136-323 35-210 (229)
489 PRK08883 ribulose-phosphate 3- 73.7 62 0.0013 28.3 12.3 79 131-213 113-195 (220)
490 COG0159 TrpA Tryptophan syntha 73.5 70 0.0015 28.9 12.2 113 136-270 111-225 (265)
491 PRK12999 pyruvate carboxylase; 73.4 95 0.0021 34.3 14.6 77 130-212 622-710 (1146)
492 PLN02746 hydroxymethylglutaryl 73.1 19 0.00041 34.0 8.1 77 132-214 195-274 (347)
493 PRK07259 dihydroorotate dehydr 73.1 75 0.0016 29.0 17.2 122 196-323 107-242 (301)
494 cd02810 DHOD_DHPD_FMN Dihydroo 72.9 31 0.00067 31.3 9.5 80 132-212 109-195 (289)
495 cd00408 DHDPS-like Dihydrodipi 72.9 24 0.00052 31.9 8.7 80 130-212 14-98 (281)
496 PRK08649 inosine 5-monophospha 72.7 53 0.0011 31.3 11.1 99 166-283 117-215 (368)
497 cd02067 B12-binding B12 bindin 72.6 38 0.00082 26.1 8.7 70 137-214 40-110 (119)
498 PRK09283 delta-aminolevulinic 72.5 25 0.00054 32.6 8.5 57 128-186 53-116 (323)
499 PRK01362 putative translaldola 72.5 66 0.0014 28.1 12.5 82 138-222 113-194 (214)
500 PRK14057 epimerase; Provisiona 72.2 74 0.0016 28.6 12.6 98 131-241 139-240 (254)
No 1
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=2.6e-53 Score=387.55 Aligned_cols=293 Identities=53% Similarity=0.962 Sum_probs=266.9
Q ss_pred ccCCCceecccccCCCCCCCCchhhhhhccCCc----chHHHHHHHhcCCHHHHHHhcCCCCccccccCC-CCceeeEEE
Q 020304 32 MKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQ----RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGG-GDGIATATI 106 (328)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~----~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~-~~~~~~~~~ 106 (328)
.++++.++++++++.. .++|+||+.++..|+ .+.++.++++...|.++|++|.||++.+||.++ +....+++|
T Consensus 75 ~~~~~~~~~~~~~~~~--~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATf 152 (398)
T PTZ00413 75 GLKPSAASIGPIKRGE--EPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATI 152 (398)
T ss_pred ccccccccCCCccCCC--CCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEe
Confidence 4555667777777433 589999999999998 789999999999999999999999999999874 234558999
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~ 186 (328)
++.++.|+.+|.||++.....+...+++|+.+.++.+.++|++++++|+|+.++++|++.+++.+.++.|++..|++.++
T Consensus 153 milG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ie 232 (398)
T PTZ00413 153 MVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLE 232 (398)
T ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999998755445678899999999999999999999999988899989999999999999987899999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHh-CCCCeEEEeEEEEcCCCHHHH
Q 020304 187 CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS-KKGLITKSSIMLGLGESDDDL 265 (328)
Q Consensus 187 ~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~Gi~v~~~~ivGlgEt~e~~ 265 (328)
++.+++..+++.++.|++||++.++||+||..+++..++++.++|++.+++++.+++. .+|+.+++++|+|+|||++|+
T Consensus 233 vligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEv 312 (398)
T PTZ00413 233 ALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEV 312 (398)
T ss_pred EcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHH
Confidence 9888877789999999999999999999999999988884468999999999999984 259999999999999999999
Q ss_pred HHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 266 KEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 266 ~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
.++++.|+++|++.++|+|||+||+.++++..+++|++|+.|++++.++||++|++|||||
T Consensus 313 ie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 313 RQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 2
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=5.6e-53 Score=388.13 Aligned_cols=280 Identities=75% Similarity=1.275 Sum_probs=262.0
Q ss_pred CCCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCC
Q 020304 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (328)
Q Consensus 47 ~~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~ 126 (328)
.+..++|+||+.++..|+.+.++.++++...|+++|++|.||++.+||.++.+...+.++++++++|+++|.||+++..+
T Consensus 46 ~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~ 125 (349)
T PLN02428 46 DKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSR 125 (349)
T ss_pred CCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCC
Confidence 45678999999999999999999999999999999999999999999998656677999999999999999999998876
Q ss_pred CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 127 ~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
++...+++++.++++.+.+.|+++++|+|++.++++|++.+++.++++.|++..|++.++++++++..+++.++.|+++|
T Consensus 126 ~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 126 TPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcC
Confidence 66667788999999999999999999999998888888899999999999998899999998898877999999999999
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
++.+.||+|+.+++++.++++++++++++++++.+++.++|+.+++++|+|+|||++|+.++++++++++++.+++.+|+
T Consensus 206 ~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL 285 (349)
T PLN02428 206 LDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYL 285 (349)
T ss_pred CCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecccc
Confidence 99999999999889888875578999999999999995559999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+|+..++++..+++|++|+.|++++.++||++|++|||||
T Consensus 286 ~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 286 RPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred CCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 9999999999999999999999999999999999999998
No 3
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.8e-53 Score=363.36 Aligned_cols=273 Identities=56% Similarity=0.965 Sum_probs=263.4
Q ss_pred CCCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCC
Q 020304 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (328)
Q Consensus 47 ~~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~ 126 (328)
.++.++|+||+.|+..|.++.+++++++...|.++|++|.||+|.+||..+ +++|++.+..|..+|.||.+..++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 456799999999999999999999999999999999999999999999987 999999999999999999998877
Q ss_pred CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 127 ~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
+..++++|+.+.++.++++|.++++||+.+.++|.|++..+|.+.+++|++..|++.+++++|++...++.++.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 7788999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.+.++||+||..+++..+| ++.+|++.++.++.+++..+.+.+.+++|+|+|||.+|+.++++.|++.|+|.+++.||+
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 9999999999999998898 789999999999999996666999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+||..++++..+++|++|++|++++.++||.++++|||+|
T Consensus 252 qPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvR 291 (306)
T COG0320 252 QPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVR 291 (306)
T ss_pred CCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccc
Confidence 9999999999999999999999999999999999999998
No 4
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=2.9e-52 Score=379.59 Aligned_cols=274 Identities=48% Similarity=0.902 Sum_probs=255.6
Q ss_pred CCCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCC
Q 020304 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (328)
Q Consensus 47 ~~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~ 126 (328)
.+..++|+||+.++..|+.+.++.++++...|.++|++|.||++.+||.++ +++++.+++||+.+|+||+++..+
T Consensus 12 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~~~r 86 (302)
T TIGR00510 12 EILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVAHGR 86 (302)
T ss_pred CccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCccCCC
Confidence 345689999999999999999999999999999999999999999999987 999999999999999999998877
Q ss_pred CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 127 ~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
++...+++++.++++.+.+.|+++++|+|++.+++.+++.+++.++++.|++..|++.+.++++++..+.+.++.|+++|
T Consensus 87 g~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG 166 (302)
T TIGR00510 87 NPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAP 166 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcC
Confidence 66666788999999999999999999999998878777778999999999998889999988887655789999999999
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
++.+.|++|+.+++++.++ +++++++++++++.+++..+|+.+++++|+|+|||+||+.+++++++++|++.+++++|+
T Consensus 167 ~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 167 PDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred chhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeeccc
Confidence 9999999999988887777 589999999999999996679999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+||+.++++..+++|++++.|+++|.++||++|++|||||
T Consensus 246 ~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vr 285 (302)
T TIGR00510 246 RPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVR 285 (302)
T ss_pred CCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccch
Confidence 9999998899999999999999999999999999999998
No 5
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=1e-50 Score=368.79 Aligned_cols=277 Identities=46% Similarity=0.826 Sum_probs=253.9
Q ss_pred ccCCCCCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCcc
Q 020304 43 HTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAV 122 (328)
Q Consensus 43 ~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~ 122 (328)
...+.++.++|+||+.++..|+.+.++.++++..+|.++|+.|+||++.+||.++ +++++.+|+||+.+|+||++
T Consensus 5 ~~~~~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~ 79 (290)
T PRK12928 5 KSARIPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQV 79 (290)
T ss_pred ccccCCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCc
Confidence 3445678899999999999999999999999999999999999999999999876 89999999999999999999
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC-CHHHHHH
Q 020304 123 KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVET 201 (328)
Q Consensus 123 ~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~-~~e~l~~ 201 (328)
+..+ +..++++++.++++++.+.|+++++|+|++.+++++.+.+++.++++.|++..|++.+..++++... ..+.++.
T Consensus 80 ~~g~-~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~ 158 (290)
T PRK12928 80 DKGR-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLAT 158 (290)
T ss_pred cCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHH
Confidence 8854 4456788999999999999999999999987777776678999999999998889999888886543 5789999
Q ss_pred HHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 202 LVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 202 L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
|+++|.+.+.|++|+.+++++.++ +++++++++++++.+++..+++.+++++|+|+|||.+|+.++++++++++++.++
T Consensus 159 l~~Ag~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~ 237 (290)
T PRK12928 159 VLAAKPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLT 237 (290)
T ss_pred HHHcCchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999988887777 5799999999999999933349999999999999999999999999999999999
Q ss_pred eecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 282 LGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 282 i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+++|++||+.++++..+++|++++.|++++.++||++|++|||||
T Consensus 238 i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 238 IGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred EEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCccc
Confidence 999999999999999999999999999999999999999999998
No 6
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.9e-51 Score=349.98 Aligned_cols=278 Identities=68% Similarity=1.200 Sum_probs=269.0
Q ss_pred CCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC
Q 020304 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (328)
Q Consensus 49 ~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~ 128 (328)
..++|+|++.++..|++++++++.|+...|.++|++|.||+|-+||+|+.....+++++..+.-|...|+||++...+.+
T Consensus 57 ~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~P 136 (360)
T KOG2672|consen 57 RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNP 136 (360)
T ss_pred cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCC
Confidence 46889999999999999999999999999999999999999999999987778899999999999999999999999888
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
...+|.|+++.+++++++|+.+|++|+.+.++++|++..++.+.++.||+..|.+-++++++++..+-+.++.++..|+|
T Consensus 137 pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLD 216 (360)
T KOG2672|consen 137 PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLD 216 (360)
T ss_pred cCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
.+.||+||.+++...+|++..+|++.+.+++.+++..+++...+.+|.|+|||+|++..++..|++.++|.+++.+|++|
T Consensus 217 V~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~p 296 (360)
T KOG2672|consen 217 VYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQP 296 (360)
T ss_pred ceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCC
Confidence 99999999999988888889999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|+.++.+.++++|+.++.|++.+.++||.|+++||++|
T Consensus 297 tkrhl~v~eyvtpekf~~w~~~~~~lgf~y~Asgplvr 334 (360)
T KOG2672|consen 297 TKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVR 334 (360)
T ss_pred ccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceee
Confidence 99999899999999999999999999999999999998
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=8.8e-44 Score=324.31 Aligned_cols=272 Identities=55% Similarity=0.954 Sum_probs=241.8
Q ss_pred CCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCC
Q 020304 48 PDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN 127 (328)
Q Consensus 48 ~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~ 127 (328)
...++|+||+.++..|+.+.++..+++..++.+|++.|+||+.+.+|.++ .++++.+|+||+.+|+||+++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r~ 77 (289)
T PRK05481 3 KVARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGRP 77 (289)
T ss_pred CCCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCCC
Confidence 34569999999999999999999999999999999999998887788876 8999999999999999999998663
Q ss_pred CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 128 ~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
..++++++.++++++.+.|+++|+|+||+.+++++.+.+++.++++.|++..|++.+..+++......+.+..|+++|.
T Consensus 78 -~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~ 156 (289)
T PRK05481 78 -LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARP 156 (289)
T ss_pred -CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCc
Confidence 3467889999999999999999999999865554434679999999999987888888777765545789999999999
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccC
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ 287 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~ 287 (328)
+.+.++.|+.+++++.++ +++++++++++++.+++.++|+.+++++|+|+|||+||+.++++++++++++.+++++|++
T Consensus 157 ~i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 157 DVFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred ceeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 999999999888877776 4899999999999999955699999999999999999999999999999999999999997
Q ss_pred CCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 288 PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 288 PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|...++++...+++++++++.+++.++||.+|++||+||
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~ 274 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVR 274 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccc
Confidence 654234788899999999999999999999999999998
No 8
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-33 Score=257.70 Aligned_cols=239 Identities=17% Similarity=0.264 Sum_probs=194.6
Q ss_pred hhhhccCCcchHH--HHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeE--EEEEeCCCCCCCCCCCccCCCCCC---
Q 020304 56 LRQKAPQGQRFQE--VKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRNP--- 128 (328)
Q Consensus 56 i~~~~~~g~~~~~--~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~--~~i~~t~gC~~~C~FC~~~~~~~~--- 128 (328)
+.+|+.+|++++. +..++. .++..|+..|+ .+|++++|+ .+..+ .++++||.|..+|.||+|+..++.
T Consensus 3 i~~kv~~g~~ls~eeal~Ll~-~dl~~L~~~A~--~vR~~~~G~--~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~ 77 (353)
T PRK08444 3 LIEKLENNERLNQEEAVKLYD-LDLFTLGKYAD--KKRTKLHGK--KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNP 77 (353)
T ss_pred HHHHHhcCCCCCHHHHHHHhh-cCHHHHHHHHH--HHHHHhcCC--EEEEEecCCcccccccccCCccCCCccCCCCCcc
Confidence 4578888988765 666664 38999999999 999998875 44333 667889999999999999875432
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC---------CCCHHHH
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF---------RGDLRAV 199 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~---------~~~~e~l 199 (328)
..++++++.+.++++.+.|++++.|+||..+.+. .+++.++++.||+.+|++.+.++|+.+ ...+|.+
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l 154 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVL 154 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHH
Confidence 2356788999999999999999999998776553 799999999999999999998876654 3357999
Q ss_pred HHHHHcCCcEEee-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCC
Q 020304 200 ETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 200 ~~L~~aG~~~i~~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~ 277 (328)
+.|++||++++.+ +.|++++ +++.+.+.+...++|+++++.+++ .|+.+++++|+|+|||.+|+.+++..|+++++
T Consensus 155 ~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~--~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~ 232 (353)
T PRK08444 155 EDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK--KGKMSNATMLFGHIENREHRIDHMLRLRDLQD 232 (353)
T ss_pred HHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEEecCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999 7999865 887777556677899999999999 99999999999999999999999999999999
Q ss_pred CEEeeeccc----CC--CCCCcccCCCCCHHHHHH
Q 020304 278 DILTLGQYL----QP--TPLHLTVKEYVTPEKFDF 306 (328)
Q Consensus 278 ~~i~i~~~l----~P--Tp~~~~~~~~~~~~~~~~ 306 (328)
++++|+.|+ +| ||+. ..+..++.+.-+
T Consensus 233 ~t~gf~~fIp~~f~~~~t~l~--~~~~~~~~e~Lr 265 (353)
T PRK08444 233 KTGGFNAFIPLVYQRENNYLK--VEKFPSSQEILK 265 (353)
T ss_pred ccCCceEEEecccCCCCCcCC--CCCCCCHHHHHH
Confidence 998886555 12 6553 234455654433
No 9
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=100.00 E-value=7.6e-32 Score=253.07 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=191.3
Q ss_pred hhhccCCcchHH--HHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeE--EEEEeCCCCCCCCCCCccCCCCCC---C
Q 020304 57 RQKAPQGQRFQE--VKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATA--TIMLLGDTCTRGCRFCAVKTSRNP---A 129 (328)
Q Consensus 57 ~~~~~~g~~~~~--~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~--~~i~~t~gC~~~C~FC~~~~~~~~---~ 129 (328)
.+|+.+|++++. +..+++..++..|+..|+ .+|++++|+ .+..+ .+++.|++|+.+|.||+++...+. .
T Consensus 2 ~~~~~~~~~ls~~e~~~L~~~~~~~~L~~~A~--~vr~~~~g~--~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y 77 (351)
T TIGR03700 2 REKVEAGQRLSFEDGLFLYASDDLLTLGELAA--LVRERKHGD--KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAY 77 (351)
T ss_pred chHHhCCCCCCHHHHHHHcCCCcHHHHHHHHH--HHHHHhcCC--eEEEeccCCcccccccccCCccCceeCCCCCcccC
Confidence 467778877755 666776668999999999 999988874 44444 678899999999999999875432 2
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC---------CCCCCHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVE 200 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~---------~~~~~~e~l~ 200 (328)
.++++++.+.++++.+.|+++++++||+.+.+. .+++.++++.|++.+|++.+.++++ .+..+++.++
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~ 154 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLD 154 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHH
Confidence 356788999999999999999999999876553 6999999999999999999887653 2334689999
Q ss_pred HHHHcCCcEEee-chhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCC
Q 020304 201 TLVHSGLDVFAH-NIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 201 ~L~~aG~~~i~~-~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~ 278 (328)
+|++||++++.+ +.|+++ ++++.+++++.+.++++++++.+++ .|+.+++++|+|+|||.+|+.+++..+++++++
T Consensus 155 ~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~--~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 155 ELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE--LGLKTNATMLYGHIETPAHRVDHMLRLRELQDE 232 (351)
T ss_pred HHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHh
Confidence 999999999986 899975 5776666445678999999999999 999999999999999999999999999999987
Q ss_pred EEeee-----cccCC-CCCCcccCCCCCHHHHHHHHHHH
Q 020304 279 ILTLG-----QYLQP-TPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 279 ~i~i~-----~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
+.++. +|+.+ ||+.....+..++.+ .++.+|
T Consensus 233 ~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e--~lr~iA 269 (351)
T TIGR03700 233 TGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD--DLKTLA 269 (351)
T ss_pred hCCceEEEeecccCCCCcccCCCCCCCCHHH--HHHHHH
Confidence 64443 34422 776421113445544 344444
No 10
>PRK05926 hypothetical protein; Provisional
Probab=99.98 E-value=4.8e-31 Score=247.55 Aligned_cols=221 Identities=17% Similarity=0.195 Sum_probs=185.5
Q ss_pred hhhhccCCcchHH--HHHHHhc---CCHHHHHHhcCCCCccccccCCCCceeeEEEEE--eCCCCCCCCCCCccCCCCCC
Q 020304 56 LRQKAPQGQRFQE--VKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIML--LGDTCTRGCRFCAVKTSRNP 128 (328)
Q Consensus 56 i~~~~~~g~~~~~--~~~~l~~---~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~--~t~gC~~~C~FC~~~~~~~~ 128 (328)
+.+|+.+|++++. +..+++. .++..|+..|+ .+|++++| +.+..+..++ .||.|+.+|.||++.+..+.
T Consensus 18 ~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~--~iR~~~~G--~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~ 93 (370)
T PRK05926 18 LFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFAD--LIRANRVG--DTVYYSSTLYLYPTNFCQFNCTFCSFYAKPGD 93 (370)
T ss_pred HHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHH--HHHHHhcC--CeEEEEEeeeeecCCCCCCCCCccccccCCCC
Confidence 5688999988765 6666633 46888999999 99999886 4677777765 59999999999998765432
Q ss_pred ---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC---------CCCCH
Q 020304 129 ---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDL 196 (328)
Q Consensus 129 ---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~---------~~~~~ 196 (328)
..++++++.+.++++ +.|+++++|+||..+.+ +.+++.++++.|++.+|++++.++++. ...++
T Consensus 94 ~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~---~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~ 169 (370)
T PRK05926 94 PKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC---NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVK 169 (370)
T ss_pred cccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC---CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHH
Confidence 235678888888888 68999999999887654 379999999999999999998876532 22358
Q ss_pred HHHHHHHHcCCcEEee-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
|+++.|++||++++.+ +.|++.+ .++.+.+.+.+.++|+++++.+++ .|+.+++++|+|+|||.+|+.+++..|++
T Consensus 170 e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~--~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~ 247 (370)
T PRK05926 170 EVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS--LGIPSNATMLCYHRETPEDIVTHMSKLRA 247 (370)
T ss_pred HHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCcccCceEEeCCCCHHHHHHHHHHHHh
Confidence 9999999999999998 5999865 676666567789999999999999 99999999999999999999999999999
Q ss_pred CCCCEEeeeccc
Q 020304 275 IDVDILTLGQYL 286 (328)
Q Consensus 275 l~~~~i~i~~~l 286 (328)
+++++++|..|+
T Consensus 248 Lq~~t~gf~~fI 259 (370)
T PRK05926 248 LQDKTSGFKNFI 259 (370)
T ss_pred cCCccCCeeeeE
Confidence 999999988887
No 11
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.97 E-value=6.2e-31 Score=239.02 Aligned_cols=228 Identities=21% Similarity=0.302 Sum_probs=181.5
Q ss_pred HHHHHHHhcCCHH-HHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCC-CC----CCCCCCchHHH
Q 020304 67 QEVKESLSSLKLN-TVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR-NP----APPDPMEPENT 139 (328)
Q Consensus 67 ~~~~~~l~~~~l~-~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~-~~----~~~~~~ei~~~ 139 (328)
.++..++...+.+ .|++.|. .+|++|.| +.|+.++++++ |.+|+.+|.||+++... .. ..+..++|++.
T Consensus 17 ~e~~~l~~~~~~~~~L~~aA~--~~R~~~~g--~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~ 92 (335)
T COG0502 17 DEALALLDLPDEDELLFEAAQ--KHRLHFDG--NEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEA 92 (335)
T ss_pred HHHHHHHcCCcchHHHHHHHH--HHHHhcCC--CeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHH
Confidence 3356666655455 7899999 99999997 57999999998 55569999999998743 11 22456789999
Q ss_pred HHHHHHCCCc-EEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH
Q 020304 140 AKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (328)
Q Consensus 140 ~~~~~~~G~~-~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~ 218 (328)
|+.+++.|+. .+..++|.. . +.+++++.++++.+++.. ++.+. .+.+ .+++|.++.|++||+++++||+||..
T Consensus 93 Ak~ak~~Ga~r~c~~aagr~--~-~~~~~~i~~~v~~Vk~~~-~le~c-~slG-~l~~eq~~~L~~aGvd~ynhNLeTs~ 166 (335)
T COG0502 93 AKKAKAAGATRFCMGAAGRG--P-GRDMEEVVEAIKAVKEEL-GLEVC-ASLG-MLTEEQAEKLADAGVDRYNHNLETSP 166 (335)
T ss_pred HHHHHHcCCceEEEEEeccC--C-CccHHHHHHHHHHHHHhc-CcHHh-hccC-CCCHHHHHHHHHcChhheecccccCH
Confidence 9999999955 455566653 2 235799999999999763 55553 3444 57999999999999999999999977
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-CCEEeeecccCC---CCCCcc
Q 020304 219 RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQP---TPLHLT 294 (328)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-~~~i~i~~~l~P---Tp~~~~ 294 (328)
++|+.+. ++++|++++++++.+++ .|+.++++.|+|+|||.+|+.+++..|+++. +++|+++ ++.| ||++
T Consensus 167 ~~y~~I~-tt~t~edR~~tl~~vk~--~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn-~l~P~~GTPle-- 240 (335)
T COG0502 167 EFYENII-TTRTYEDRLNTLENVRE--AGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPIN-FLNPIPGTPLE-- 240 (335)
T ss_pred HHHcccC-CCCCHHHHHHHHHHHHH--cCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeee-eecCCCCCccc--
Confidence 7886666 58999999999999999 9999999999999999999999999999999 9999996 5556 8886
Q ss_pred cCCCCCHHHHHHHHHH
Q 020304 295 VKEYVTPEKFDFWKAY 310 (328)
Q Consensus 295 ~~~~~~~~~~~~l~~~ 310 (328)
..+.+++.++-++.++
T Consensus 241 ~~~~~~~~e~lk~IA~ 256 (335)
T COG0502 241 NAKPLDPFEFLKTIAV 256 (335)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3566666444443333
No 12
>PRK08445 hypothetical protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=239.66 Aligned_cols=235 Identities=17% Similarity=0.257 Sum_probs=185.2
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceee---EEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHH
Q 020304 67 QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIAT---ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTA 140 (328)
Q Consensus 67 ~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~---~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~ 140 (328)
.++..+++..++..|+..|+ .+|+++.|+ .+.+ +..+++|++|+.+|.||+++...+. ..+++++|.+.+
T Consensus 7 ~e~l~Ll~~~~l~~L~~~A~--~vr~~~~g~--~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~ 82 (348)
T PRK08445 7 EEALDLIKNAPLKELGEMAL--ERKQELHPE--KITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKI 82 (348)
T ss_pred HHHHHHhcCCCHHHHHHHHH--HHHHHHcCC--cEEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHH
Confidence 34566676678999999999 999988764 3444 3447889999999999999875322 234678899999
Q ss_pred HHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC--------CCCC-HHHHHHHHHcCCcEEe
Q 020304 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD--------FRGD-LRAVETLVHSGLDVFA 211 (328)
Q Consensus 141 ~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~--------~~~~-~e~l~~L~~aG~~~i~ 211 (328)
+++.+.|.++++++||+++.+. .+++.++++.|++.+|++.+.++++. ..++ +|.+++|++||++++.
T Consensus 83 ~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~ 159 (348)
T PRK08445 83 EELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIP 159 (348)
T ss_pred HHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCC
Confidence 9999999999999998876654 79999999999999999998776543 1123 8999999999999998
Q ss_pred e-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc---
Q 020304 212 H-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL--- 286 (328)
Q Consensus 212 ~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l--- 286 (328)
+ ++|++++ +++.+.+++.+.++|+++++.+++ .|+++++++|+|+|||.+|+.+++..++++++++.++..|+
T Consensus 160 g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~--~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~~ 237 (348)
T PRK08445 160 GAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL--IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFILWS 237 (348)
T ss_pred CCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEeccc
Confidence 5 8999866 666665568899999999999999 99999999999999999999999999999998775543332
Q ss_pred -CC--CCCCcc--cCCCCCHHHHHHHHHH
Q 020304 287 -QP--TPLHLT--VKEYVTPEKFDFWKAY 310 (328)
Q Consensus 287 -~P--Tp~~~~--~~~~~~~~~~~~l~~~ 310 (328)
.| ||+... ..+..++.+.-+.-++
T Consensus 238 ~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv 266 (348)
T PRK08445 238 FQPDNTPLKEEIPEIKKQSSNRYLRLLAV 266 (348)
T ss_pred cCCCCCcccccCCCCCCCCHHHHHHHHHH
Confidence 34 776521 1234556544333333
No 13
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.97 E-value=8.6e-30 Score=238.66 Aligned_cols=234 Identities=18% Similarity=0.256 Sum_probs=182.4
Q ss_pred HHHHHHhc-CCHHHHHHhcCCCCccccccCCCCceee--EEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHH
Q 020304 68 EVKESLSS-LKLNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAK 141 (328)
Q Consensus 68 ~~~~~l~~-~~l~~l~~~a~~p~i~~~~~~~~~~~~~--~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~ 141 (328)
++..+++. .++..|++.|+ .+|++++|+ .+.. ...+++|++|+.+|.||+++...+. ..++++++.+.++
T Consensus 5 e~~~ll~~~~~~~~L~~~A~--~ir~~~~g~--~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~ 80 (343)
T TIGR03551 5 EALELFEARGNLFELFRLAD--ELRRDIVGD--TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAA 80 (343)
T ss_pred HHHHHHhCCChHHHHHHHHH--HHHHHhcCC--eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHH
Confidence 45566655 57889999999 999998875 3332 3456679999999999999764432 3467889999999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC---------CCCCCHHHHHHHHHcCCcEEee
Q 020304 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~---------~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
++.+.|+++|.|+||+.+.+. .+++.++++.|++.+|++.+.++++ .+.+++|.++.|++||++++..
T Consensus 81 ~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~ 157 (343)
T TIGR03551 81 EAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPG 157 (343)
T ss_pred HHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccC
Confidence 999999999999988765443 6899999999999988899887642 2345799999999999999984
Q ss_pred -chhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCE------Eeeec
Q 020304 213 -NIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI------LTLGQ 284 (328)
Q Consensus 213 -~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~------i~i~~ 284 (328)
+.|+++ ++++.+++.+.++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.+++++++++ +++ +
T Consensus 158 ~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~--~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~-~ 234 (343)
T TIGR03551 158 TAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK--LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPL-P 234 (343)
T ss_pred cchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH--cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEec-c
Confidence 778885 5777666445699999999999999 9999999999999999999999999999999874 444 4
Q ss_pred ccCC-CCCCcc--cCCCCCHHHHHHHHHHH
Q 020304 285 YLQP-TPLHLT--VKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 285 ~l~P-Tp~~~~--~~~~~~~~~~~~l~~~~ 311 (328)
|+.| ||++.. ..+.+++.+.-+..+++
T Consensus 235 f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~ 264 (343)
T TIGR03551 235 FVHYNAPLYLKGMARPGPTGREDLKVHAIA 264 (343)
T ss_pred ccCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 5544 777521 12334554444333333
No 14
>PRK05927 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=242.65 Aligned_cols=237 Identities=19% Similarity=0.218 Sum_probs=183.5
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCCccccccCCCCcee--eEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHH
Q 020304 67 QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIA--TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAK 141 (328)
Q Consensus 67 ~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~--~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~ 141 (328)
.++..+++..+++.|+..|+ .+|++++++ +.+. ....+++||.|+.+|.||+|+...+. ..++++++.+.++
T Consensus 10 ee~l~L~~~~~l~~L~~~A~--~iR~~~~~G-~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~ 86 (350)
T PRK05927 10 QEGLELFLYSPLEELQEHAD--SLRKQRYPQ-NTVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQ 86 (350)
T ss_pred HHHHHHhcCCCHHHHHHHHH--HHHHHHcCC-CeEEEEcccCCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHH
Confidence 33666676668999999999 999888731 3333 23335679999999999999874322 2457788999999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC---------CCCCCHHHHHHHHHcCCcEEee
Q 020304 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~---------~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
++.+.|+++++|+||..+.+ +.+++.++++.||+.+|++.+.++++ .+..++|.+++|++||++++.+
T Consensus 87 ~~~~~G~~~i~i~gG~~p~~---~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g 163 (350)
T PRK05927 87 RYVSAGVKTVLLQGGVHPQL---GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPG 163 (350)
T ss_pred HHHHCCCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCC
Confidence 99999999999999987654 37999999999999888887655443 2445799999999999999998
Q ss_pred -chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccC---
Q 020304 213 -NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ--- 287 (328)
Q Consensus 213 -~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~--- 287 (328)
++|++++ +++.+.+.+.+.++|+++++.|++ .|+++++++|+|+|||.+|+.+++..|++++.++.+|..|+.
T Consensus 164 ~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~--lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~ 241 (350)
T PRK05927 164 GGAEILSERVRKIISPKKMGPDGWIQFHKLAHR--LGFRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSY 241 (350)
T ss_pred CCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH--cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCc
Confidence 9999977 667777445567999999999999 999999999999999999999999999999966655555552
Q ss_pred -C--CCCCcccCCCCCHHHHHHHHHHH
Q 020304 288 -P--TPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 288 -P--Tp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
| ||+........++++.-+..+++
T Consensus 242 ~~~~tpl~~~~~~~~s~~e~Lr~iAv~ 268 (350)
T PRK05927 242 KPGNTALGRRVPHQASPELYYRILAVA 268 (350)
T ss_pred CCCCCccccCCCCCCCHHHHHHHHHHH
Confidence 2 66542111245665544433333
No 15
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.97 E-value=1e-29 Score=239.93 Aligned_cols=240 Identities=20% Similarity=0.246 Sum_probs=192.8
Q ss_pred hhccCCcchHH--HHHHHhc---CCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC--CC
Q 020304 58 QKAPQGQRFQE--VKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP--AP 130 (328)
Q Consensus 58 ~~~~~g~~~~~--~~~~l~~---~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~--~~ 130 (328)
+++++|++++. +..+++. .+++.|+..|+ .+++.++| +.+..++.+++|++|+.+|.||+++...+. ..
T Consensus 28 ~~il~g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ 103 (371)
T PRK09240 28 ERALNKDRLSLEDLMALLSPAAEPYLEEMAQKAQ--RLTRQRFG--NTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKT 103 (371)
T ss_pred HHHHhcCCCCHHHHHHHhCCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEeceEEcccccCcCCcCCCCCCCCCcccc
Confidence 57778877754 6677763 25888999999 99998887 477778888899999999999999764322 34
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++++|+.+.++.+.+.|++++.|+||+++.. .+.+++.++++.|++.+|++.++. ..++.+.++.|++||++++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~--~~~e~l~~~i~~Ik~~~p~i~i~~----g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAK--VGVDYIRRALPIAREYFSSVSIEV----QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC--CCHHHHHHHHHHHHHhCCCceecc----CCCCHHHHHHHHHcCCCEE
Confidence 5778999999999999999999999886543 247999999999999888776653 2358999999999999999
Q ss_pred eechhhHH-HHHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEcCCCHHHHHHHHHHHHhCCCC------EE
Q 020304 211 AHNIETVK-RLQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDVD------IL 280 (328)
Q Consensus 211 ~~~~et~~-~~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGlgEt~e~~~~~l~~l~~l~~~------~i 280 (328)
++++||++ +.++.++ ++++++++++++++.+++ +|+. +++++|+|+||+.+|+.+++..++++++. .+
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv 255 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGR--AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSI 255 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHH--cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceee
Confidence 99999984 4776664 347899999999999999 9996 99999999999999999999999999874 67
Q ss_pred eeecccCCCCCCcccCCCCCHHHHHHHHHH
Q 020304 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAY 310 (328)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~ 310 (328)
+| +++.|.+..+.....+++.++.++...
T Consensus 256 ~~-~~l~P~~g~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 256 SF-PRLRPCTGGIEPASIVSDKQLVQLICA 284 (371)
T ss_pred ec-CccccCCCCCCCCCCCCHHHHHHHHHH
Confidence 77 577785433334455677666544333
No 16
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.97 E-value=7e-30 Score=241.19 Aligned_cols=230 Identities=19% Similarity=0.265 Sum_probs=183.8
Q ss_pred hhhhhccCCcchHH--HHHHHhcCC---HHHHHHhcCCCCccccccCCCCceee--EEEEEeCCCCCCCCCCCccCCCCC
Q 020304 55 WLRQKAPQGQRFQE--VKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRN 127 (328)
Q Consensus 55 ~i~~~~~~g~~~~~--~~~~l~~~~---l~~l~~~a~~p~i~~~~~~~~~~~~~--~~~i~~t~gC~~~C~FC~~~~~~~ 127 (328)
-+.+|+.+|++++. +..+++..+ ++.|+..|+ .+|+.++|+ .+.. ...+++|+.|+.+|.||+++...+
T Consensus 9 ~~~~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~--~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~ 84 (371)
T PRK07360 9 DILERARKGKDLSKEDALELLETTEPRRIFEILELAD--RLRKEQVGD--TVTYVVNRNINFTNICEGHCGFCAFRRDEG 84 (371)
T ss_pred HHHHHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHH--HHHHHhcCC--eEEEEeccCcccchhhhcCCccCCcccCCC
Confidence 35688889988765 666665544 888999999 999988875 4433 344667999999999999987543
Q ss_pred C---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC---------CCCCC
Q 020304 128 P---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGD 195 (328)
Q Consensus 128 ~---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~---------~~~~~ 195 (328)
. ..++++++.+.++++.+.|++++.|+||..+... +.+++.++++.+|+.+|++.+.++++ .+..+
T Consensus 85 ~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~ 162 (371)
T PRK07360 85 DHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSY 162 (371)
T ss_pred CCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCH
Confidence 2 2357788999999999999999999998765443 36899999999999888888876542 23457
Q ss_pred HHHHHHHHHcCCcEEee-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~ 273 (328)
++.++.|++||++++.- +.|++++ +++.+.+.+.+.++|+++++.+++ .|+.+++++|+|+|||.+|+.+++.+++
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~--~Gl~~~sg~i~G~gEt~edrv~~l~~lr 240 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK--LGLPTTSTMMYGHVETPEHRIDHLLILR 240 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCceeeEEeeCCCCHHHHHHHHHHHH
Confidence 89999999999999963 5666654 666666456799999999999999 9999999999999999999999999999
Q ss_pred hCCCCEEeee-----cccCC-CCCC
Q 020304 274 SIDVDILTLG-----QYLQP-TPLH 292 (328)
Q Consensus 274 ~l~~~~i~i~-----~~l~P-Tp~~ 292 (328)
++++++.+|. +|+.| ||+.
T Consensus 241 ~l~~~~~g~~~fIp~~f~~~~Tpl~ 265 (371)
T PRK07360 241 EIQQETGGITEFVPLPFVHENAPLY 265 (371)
T ss_pred HhchhhCCeeEEEeccccCCCCccc
Confidence 9999874443 34433 7764
No 17
>PRK06256 biotin synthase; Validated
Probab=99.97 E-value=5.4e-29 Score=233.05 Aligned_cols=240 Identities=23% Similarity=0.285 Sum_probs=188.8
Q ss_pred hhhhccCCcchHH--HHHHHhc--CCHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCCCC--
Q 020304 56 LRQKAPQGQRFQE--VKESLSS--LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRNP-- 128 (328)
Q Consensus 56 i~~~~~~g~~~~~--~~~~l~~--~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~~~-- 128 (328)
+.+|+.+|+.++. +..+++. .+++.|+..|+ .+|++++| +.+..++++++ |++|+++|.||+++...+.
T Consensus 10 ~~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~ 85 (336)
T PRK06256 10 LARKLLEGEGLTKEEALALLEIPDDDLLELLAAAY--EVRKHFCG--KKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPV 85 (336)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHH--HHHHHhCC--CeEEEEEeeeccCCCCCCCCccCCCcCCCCCCC
Confidence 5578889988755 6667663 36888999999 99998886 46777788876 9999999999999864321
Q ss_pred ---CCCCCCchHHHHHHHHHCCCcEEEEE-eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 129 ---APPDPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 129 ---~~~~~~ei~~~~~~~~~~G~~~i~l~-gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..++++++.+.++.+.+.|+.++.+. ||..+. ..+.+++.++++.+++. +++.+.+ +...++++.++.|++
T Consensus 86 ~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~--~~~~~~~~e~i~~i~~~-~~i~~~~--~~g~l~~e~l~~Lke 160 (336)
T PRK06256 86 YRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPS--GKEVDQVVEAVKAIKEE-TDLEICA--CLGLLTEEQAERLKE 160 (336)
T ss_pred ceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC--chHHHHHHHHHHHHHhc-CCCcEEe--cCCcCCHHHHHHHHH
Confidence 23567889999999999999888765 454332 22357899999999987 5666643 334469999999999
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+|++++.+++|+.+++++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+|+.+++.++++++++.++++
T Consensus 161 aG~~~v~~~lEts~~~~~~i~-~~~t~~~~i~~i~~a~~--~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~- 236 (336)
T PRK06256 161 AGVDRYNHNLETSRSYFPNVV-TTHTYEDRIDTCEMVKA--AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN- 236 (336)
T ss_pred hCCCEEecCCccCHHHHhhcC-CCCCHHHHHHHHHHHHH--cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-
Confidence 999999999999545777666 47899999999999999 99999999999999999999999999999999999995
Q ss_pred ccCC---CCCCcccCCCCCHHHHHHHHHH
Q 020304 285 YLQP---TPLHLTVKEYVTPEKFDFWKAY 310 (328)
Q Consensus 285 ~l~P---Tp~~~~~~~~~~~~~~~~l~~~ 310 (328)
++.| ||+. ..+.+++.++.++.++
T Consensus 237 ~l~P~pGT~l~--~~~~~~~~e~l~~ia~ 263 (336)
T PRK06256 237 FLNPIPGTPLE--NHPELTPLECLKTIAI 263 (336)
T ss_pred ccccCCCCCCC--CCCCCCHHHHHHHHHH
Confidence 4445 7764 2344566555544443
No 18
>PRK07094 biotin synthase; Provisional
Probab=99.97 E-value=7.9e-29 Score=230.78 Aligned_cols=229 Identities=23% Similarity=0.347 Sum_probs=182.8
Q ss_pred HHHHHHhcCC---HHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHH
Q 020304 68 EVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAK 141 (328)
Q Consensus 68 ~~~~~l~~~~---l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~ 141 (328)
++..+++..+ ++.|+..|+ .+|+.+.| +.+..++++++|++|+++|.||+++...+. ...+++++.++++
T Consensus 5 e~~~ll~~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~ 80 (323)
T PRK07094 5 EILELLSNDDEEELKYLFKAAD--EVRKKYVG--DEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAK 80 (323)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH--HHHHHhCC--CEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHH
Confidence 4566666543 335899999 99998887 467788899999999999999999865432 2346778889999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH-HH
Q 020304 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RL 220 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~-~~ 220 (328)
.+.+.|+++++|+||+.+.+. .+++.++++.|++. +++.+.+ +.+ ..+++.++.|+++|++++.+++|+.+ ++
T Consensus 81 ~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~-~~g-~~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 81 KAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITL-SLG-ERSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred HHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEE-ecC-CCCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 998999999999998755443 58999999999987 5776653 333 35899999999999999999999995 47
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCC
Q 020304 221 QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKE 297 (328)
Q Consensus 221 ~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~ 297 (328)
++.++ +++++++++++++.+++ .|+.+++++|+|+ |||.+++.++++++++++++.++++.|+. | ||++. ..
T Consensus 155 ~~~i~-~~~s~~~~~~~i~~l~~--~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~--~~ 229 (323)
T PRK07094 155 YAKLH-PGMSFENRIACLKDLKE--LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKD--EK 229 (323)
T ss_pred HHHhC-CCCCHHHHHHHHHHHHH--cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCccc--CC
Confidence 77777 47899999999999999 9999999999999 99999999999999999999999976662 3 77752 22
Q ss_pred CCCHHHHHHHHHHH
Q 020304 298 YVTPEKFDFWKAYG 311 (328)
Q Consensus 298 ~~~~~~~~~l~~~~ 311 (328)
..+.++..++.+++
T Consensus 230 ~~~~~~~~~~~a~~ 243 (323)
T PRK07094 230 GGSLELTLKVLALL 243 (323)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444333333
No 19
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.97 E-value=3.6e-29 Score=254.79 Aligned_cols=242 Identities=19% Similarity=0.264 Sum_probs=192.0
Q ss_pred hhhhccCCcchHH--HHHHHh--cCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC---
Q 020304 56 LRQKAPQGQRFQE--VKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP--- 128 (328)
Q Consensus 56 i~~~~~~g~~~~~--~~~~l~--~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~--- 128 (328)
|.+|+.+|++++. +..+++ ..+++.|+..|+ .+|+.++|+.-.+..+..+++||.|+.+|.||+|+..++.
T Consensus 477 l~~~~~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad--~iR~~~~G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~ 554 (843)
T PRK09234 477 LRAAERDPAGLTDDEALALFTADGPALEAVCRLAD--DLRRDVVGDDVTYVVNRNINFTNICYTGCRFCAFAQRKTDADA 554 (843)
T ss_pred HHHHHhcCCCCCHHHHHHHHcCCchhHHHHHHHHH--HHHHHhcCCeEEEEEeeceecCCCCCCCCcccccccCCCCCCc
Confidence 4467778888755 666665 247899999999 9999888752112234456789999999999999875432
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC---------CCCCHHHH
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAV 199 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~---------~~~~~e~l 199 (328)
..++++++.+.++++.+.|+++++++||..+.+. .+++.++++.||+.+|+++++++++. ++..+|.+
T Consensus 555 y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l 631 (843)
T PRK09234 555 YTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWL 631 (843)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHH
Confidence 3457788999999999999999999998876554 78999999999999999999988762 23468999
Q ss_pred HHHHHcCCcEEee-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCC
Q 020304 200 ETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 200 ~~L~~aG~~~i~~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~ 277 (328)
+.|++||++++.+ +.|++++ +++.+.+.+.+.++|+++++.+++ .|+.+++++|+|+|||.+|+.+++..|++++.
T Consensus 632 ~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~--lGi~~~stmm~G~~Et~edrv~hl~~LreLq~ 709 (843)
T PRK09234 632 TALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE--VGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQD 709 (843)
T ss_pred HHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH--cCCCcccceEEcCCCCHHHHHHHHHHHHhcCc
Confidence 9999999999987 7777765 787777667899999999999999 99999999999999999999999999999998
Q ss_pred C------EEeeecccCC-CCCCcc--cCCCCCHHHHH
Q 020304 278 D------ILTLGQYLQP-TPLHLT--VKEYVTPEKFD 305 (328)
Q Consensus 278 ~------~i~i~~~l~P-Tp~~~~--~~~~~~~~~~~ 305 (328)
+ +|++ +|+.| ||+++. ..+..++.+.-
T Consensus 710 ~tgGf~~fIPl-~F~~~~tpl~l~~~~~~~~t~~e~L 745 (843)
T PRK09234 710 RTGGFTEFVPL-PFVHQNAPLYLAGAARPGPTHRENR 745 (843)
T ss_pred ccCCeeeeeec-cccCCCCCcccccCCCCCCCHHHHH
Confidence 5 5555 46644 666421 22345554443
No 20
>PRK15108 biotin synthase; Provisional
Probab=99.96 E-value=4.1e-28 Score=226.59 Aligned_cols=222 Identities=18% Similarity=0.292 Sum_probs=175.1
Q ss_pred HHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCC-CC----CCCCCCchHHHHH
Q 020304 68 EVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR-NP----APPDPMEPENTAK 141 (328)
Q Consensus 68 ~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~-~~----~~~~~~ei~~~~~ 141 (328)
++..++.. ++.+|+..|+ .+++.++++ +.+..++++++ |++|+.+|.||+++... .. ..++++|+.+.++
T Consensus 11 e~~~l~~~-~l~~l~~~A~--~ir~~~fg~-~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~ 86 (345)
T PRK15108 11 QVTELFEK-PLLELLFEAQ--QVHRQHFDP-RQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 86 (345)
T ss_pred HHHHHHcc-cHHHHHHHHH--HHHHHhcCC-CEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHH
Confidence 35555543 8888888999 997766663 56888899887 99999999999998532 11 2257789999999
Q ss_pred HHHHCCCcEEEEEec-cCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHH
Q 020304 142 AIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg-~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~ 220 (328)
++.+.|+++++++++ ..+ ...+.+++.++++.+|+. ++.+ +.+++. ++++.++.|++||+++++|++||.+..
T Consensus 87 ~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v-~~s~G~-ls~e~l~~LkeAGld~~n~~leT~p~~ 160 (345)
T PRK15108 87 KAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLET-CMTLGT-LSESQAQRLANAGLDYYNHNLDTSPEF 160 (345)
T ss_pred HHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEE-EEeCCc-CCHHHHHHHHHcCCCEEeeccccChHh
Confidence 999999999988654 222 222479999999999975 4555 345554 589999999999999999999996667
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCCccc
Q 020304 221 QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHLTV 295 (328)
Q Consensus 221 ~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l--~~~~i~i~~~l~P---Tp~~~~~ 295 (328)
+..++ +++++++++++++.+++ .|+.+++++|+|+|||.+|+.+++..++++ ++++++++ ++.| ||+. .
T Consensus 161 f~~I~-~~~~~~~rl~~i~~a~~--~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~-~~~P~~gTpl~--~ 234 (345)
T PRK15108 161 YGNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN-MLVKVKGTPLA--D 234 (345)
T ss_pred cCCCC-CCCCHHHHHHHHHHHHH--cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeC-CccCCCCCCCC--C
Confidence 76665 47899999999999999 999999999999999999999999999999 67889995 5555 7764 2
Q ss_pred CCCCCHHHHH
Q 020304 296 KEYVTPEKFD 305 (328)
Q Consensus 296 ~~~~~~~~~~ 305 (328)
.+.+++.+.-
T Consensus 235 ~~~~~~~e~l 244 (345)
T PRK15108 235 NDDVDAFDFI 244 (345)
T ss_pred CCCCCHHHHH
Confidence 2344554443
No 21
>PRK08508 biotin synthase; Provisional
Probab=99.96 E-value=6.2e-28 Score=219.62 Aligned_cols=202 Identities=21% Similarity=0.269 Sum_probs=163.5
Q ss_pred CceeeEEEEEe-CCCCCCCCCCCccCCCC-CC---CC-CCCCchHHHHHHHHHCCCcEEEEE-eccCCCCCCCcHHHHHH
Q 020304 99 DGIATATIMLL-GDTCTRGCRFCAVKTSR-NP---AP-PDPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFAR 171 (328)
Q Consensus 99 ~~~~~~~~i~~-t~gC~~~C~FC~~~~~~-~~---~~-~~~~ei~~~~~~~~~~G~~~i~l~-gg~~~~l~~~~~~~l~~ 171 (328)
|.+..++++++ |++|+.+|.||+++... +. .. .+++++.+.++++.+.|+++++++ +|.. +.+...+++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHH
Confidence 56789999987 99999999999998632 21 22 467889999999889999999885 4543 33345799999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 172 li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
+++.||+.+|++.+.+ ++ +.+++|.++.|++||++++.+++|+.+++++.+. ++++|++++++++.+++ .|+.++
T Consensus 80 i~~~ik~~~p~l~i~~-s~-G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~ 154 (279)
T PRK08508 80 AAKAVKKEVPGLHLIA-CN-GTASVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE--AGLGLC 154 (279)
T ss_pred HHHHHHhhCCCcEEEe-cC-CCCCHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH--cCCeec
Confidence 9999999878877643 33 4459999999999999999999999877776555 47899999999999999 999999
Q ss_pred EeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCCcccCCCCCHHHHHHHHHHH
Q 020304 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 252 ~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
+++|+|+|||.||+.+++.++++++++++++ +|+.| ||+. .+..++++..+..+++
T Consensus 155 sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl-~~~~p~~~t~~~---~~~~~~~~~lr~iAv~ 213 (279)
T PRK08508 155 SGGIFGLGESWEDRISFLKSLASLSPHSTPI-NFFIPNPALPLK---APTLSADEALEIVRLA 213 (279)
T ss_pred ceeEEecCCCHHHHHHHHHHHHcCCCCEEee-CCcCCCCCCCCC---CCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 57766 6653 2345565544444444
No 22
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.96 E-value=1.5e-28 Score=231.80 Aligned_cols=240 Identities=19% Similarity=0.222 Sum_probs=191.9
Q ss_pred hhhhhhccCCcchHH--HHHHHhcC---CHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC
Q 020304 54 EWLRQKAPQGQRFQE--VKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (328)
Q Consensus 54 ~~i~~~~~~g~~~~~--~~~~l~~~---~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~ 128 (328)
.--.+++++|++++. +..+++.. +++.|++.|+ .+++.++| +.+..++.++.|++|+++|.||+++.....
T Consensus 23 ~~~~~~~l~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G--~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~ 98 (366)
T TIGR02351 23 AADVERALNKRHLSLEDFLALLSPAAEPYLEEMAQKAK--KLTRKRFG--NTISLFTPLYLSNYCSNKCVYCGFSMSNKI 98 (366)
T ss_pred HHHHHHHHhCCCCCHHHHHHHhCCCchHHHHHHHHHHH--HHHHHHcC--CEEEEEeeeeECccccCCCCcCCCCCCCCC
Confidence 333467888888755 66777643 4888999999 99988887 467778888899999999999999764322
Q ss_pred --CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 129 --APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 129 --~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
..++++++.+.++.+.+.|++++.++||..+... +.+++.++++.+++.+|.+.+++. .++.+.++.|+++|
T Consensus 99 ~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~--~~e~l~eii~~Ik~~~p~i~Iei~----~lt~e~~~~Lk~aG 172 (366)
T TIGR02351 99 KRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAA--GVEYIAEAIKLAREYFSSLAIEVQ----PLNEEEYKKLVEAG 172 (366)
T ss_pred ccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCC--CHHHHHHHHHHHHHhCCccccccc----cCCHHHHHHHHHcC
Confidence 2356788999999999999999999988765433 379999999999998877776542 26999999999999
Q ss_pred CcEEeechhhHHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEcCCCHHHHHHHHHHHHhCCC-----
Q 020304 207 LDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSIDV----- 277 (328)
Q Consensus 207 ~~~i~~~~et~~~-~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGlgEt~e~~~~~l~~l~~l~~----- 277 (328)
++++++++||+++ .++.++ ++++++++++++++.+++ +|+. +++++|+|+||+.+|..+++..++++++
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~--aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~ 250 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAK--AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKT 250 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHH--cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999954 666554 357899999999999999 9998 9999999999999999999999998877
Q ss_pred -CEEeeecccCCCCCCcccCCCCCHHHHHH
Q 020304 278 -DILTLGQYLQPTPLHLTVKEYVTPEKFDF 306 (328)
Q Consensus 278 -~~i~i~~~l~PTp~~~~~~~~~~~~~~~~ 306 (328)
..+++ +++.|.+..+.....+++.++.+
T Consensus 251 ~~sv~~-~~l~P~~g~~~~~~~l~~~~~~~ 279 (366)
T TIGR02351 251 EISISV-PRLRPCTNGLKPKVIVTDRELVQ 279 (366)
T ss_pred Cccccc-cccccCCCCCCCCCcCCHHHHHH
Confidence 57777 57778433333345566655543
No 23
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.96 E-value=6.2e-29 Score=232.91 Aligned_cols=233 Identities=20% Similarity=0.252 Sum_probs=178.2
Q ss_pred HHHHHHhcCCHHHHHHhcCCCCcccccc-CCCCceee--EEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHH
Q 020304 68 EVKESLSSLKLNTVCEEAQCPNIGECWN-GGGDGIAT--ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAK 141 (328)
Q Consensus 68 ~~~~~l~~~~l~~l~~~a~~p~i~~~~~-~~~~~~~~--~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~ 141 (328)
++..+++..+++.|+..|+ .+|++++ |+ .+.. ...+++|++|+.+|.||+++...+. ..++++++.+.++
T Consensus 7 ~~~~ll~~~~~~~l~~~A~--~vr~~~~~g~--~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~ 82 (340)
T TIGR03699 7 EALELYKEADLLALGALAD--EVRRRRHPGN--IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIE 82 (340)
T ss_pred HHHHHccCCcHHHHHHHHH--HHHHHhcCCC--eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHH
Confidence 3556676668999999999 9999887 64 4543 3445579999999999998654322 2467788999999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC---------CCCCHHHHHHHHHcCCcEEee
Q 020304 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~---------~~~~~e~l~~L~~aG~~~i~~ 212 (328)
++.+.|+++++|+||..+.+. .+++.++++.|++..+++.+.++++. +..+++.++.|++||++++.+
T Consensus 83 ~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~ 159 (340)
T TIGR03699 83 ELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPG 159 (340)
T ss_pred HHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCC
Confidence 999999999999988765443 68899999999998777776543321 223589999999999999986
Q ss_pred -chhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee-----cc
Q 020304 213 -NIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG-----QY 285 (328)
Q Consensus 213 -~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~-----~~ 285 (328)
+.|+++ ++++.+.+++.++++++++++.+++ .|+.+++++|+|+|||.+++.+++.++++++++...+. +|
T Consensus 160 ~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~--~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f 237 (340)
T TIGR03699 160 GGAEILSDRVRKIISPKKISSEEWLEVMETAHK--LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTF 237 (340)
T ss_pred CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecc
Confidence 789884 4676665456799999999999999 99999999999999999999999999999998763332 34
Q ss_pred cCC-CCCCcccCCCCCHHHHHHHHHHH
Q 020304 286 LQP-TPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 286 l~P-Tp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
+.+ ||++ ..+..++++.-+..+++
T Consensus 238 ~p~~tpl~--~~~~~~~~e~l~~iA~~ 262 (340)
T TIGR03699 238 QPGNTELG--KKRPATSTEYLKVLAIS 262 (340)
T ss_pred cCCCCccc--CCCCCCHHHHHHHHHHH
Confidence 422 7764 22345555444333333
No 24
>PLN02389 biotin synthase
Probab=99.96 E-value=9.3e-28 Score=225.79 Aligned_cols=227 Identities=19% Similarity=0.259 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCC-CC----CCCCCCchHHHH
Q 020304 67 QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR-NP----APPDPMEPENTA 140 (328)
Q Consensus 67 ~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~-~~----~~~~~~ei~~~~ 140 (328)
.++..++.. ++..|+..|+ .++++++++ +.+..++++++ |++|+.+|.||+++... .. ..++++++.+.+
T Consensus 50 ~e~l~L~~~-~l~~l~~~A~--~vr~~~~~~-~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a 125 (379)
T PLN02389 50 DEIKEVYDS-PLLDLLFHGA--QVHRHAHDP-REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAA 125 (379)
T ss_pred HHHHHHHcC-cHHHHHHHHH--HHHHHhcCC-CEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHH
Confidence 345666643 8889999999 899877753 67999999998 99999999999997642 11 235778999999
Q ss_pred HHHHHCCCcEEEEEeccCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH
Q 020304 141 KAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR 219 (328)
Q Consensus 141 ~~~~~~G~~~i~l~gg~~~~l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~ 219 (328)
+++.+.|++++++++....... +...+++.++++.+|+. ++.+. .+++ .+++|.++.|++||++++.+++|+.++
T Consensus 126 ~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~-~s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~ 201 (379)
T PLN02389 126 KRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVC-CTLG-MLEKEQAAQLKEAGLTAYNHNLDTSRE 201 (379)
T ss_pred HHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEE-ECCC-CCCHHHHHHHHHcCCCEEEeeecCChH
Confidence 9999999999988532111111 11368999999999865 45553 3444 569999999999999999999999766
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC--CCCEEeeecccCC---CCCCcc
Q 020304 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP---TPLHLT 294 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l--~~~~i~i~~~l~P---Tp~~~~ 294 (328)
.++.+. ++++|++++++++.+++ .|+.+++++|+|+|||.+|+.+++.+++++ +++.++++ ++.| ||+.
T Consensus 202 ~y~~i~-~~~s~e~rl~ti~~a~~--~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~-~l~P~~GTpL~-- 275 (379)
T PLN02389 202 YYPNVI-TTRSYDDRLETLEAVRE--AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN-ALVAVKGTPLE-- 275 (379)
T ss_pred HhCCcC-CCCCHHHHHHHHHHHHH--cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc-cceecCCCcCC--
Confidence 776555 36799999999999999 999999999999999999999999999999 58899995 5546 7764
Q ss_pred cCCCCCHHHHHHH
Q 020304 295 VKEYVTPEKFDFW 307 (328)
Q Consensus 295 ~~~~~~~~~~~~l 307 (328)
..+.+++.+.-+.
T Consensus 276 ~~~~~s~~e~lr~ 288 (379)
T PLN02389 276 DQKPVEIWEMVRM 288 (379)
T ss_pred CCCCCCHHHHHHH
Confidence 2344555444333
No 25
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.96 E-value=1e-27 Score=230.01 Aligned_cols=257 Identities=17% Similarity=0.268 Sum_probs=199.9
Q ss_pred hhhhhccCCcchHH--HHHHHhcC---CHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC-
Q 020304 55 WLRQKAPQGQRFQE--VKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP- 128 (328)
Q Consensus 55 ~i~~~~~~g~~~~~--~~~~l~~~---~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~- 128 (328)
-+.+|+.+|+.++. +..+|+.. .++.|++.|+ .+++.++| +.+..++++++||.|+.+|.||+|+..++.
T Consensus 35 ~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~--~ir~~~~G--n~I~lfapLyiSN~C~n~C~YCgfs~~n~~i 110 (469)
T PRK09613 35 EILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAR--EIKEKIYG--NRIVLFAPLYISNYCVNNCVYCGFRRSNKEI 110 (469)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHH--HHHHHHcC--CEEEEEEeccccCCCCCCCccCCCccCCCCC
Confidence 35578888877755 77777654 3788999999 99999887 467788899999999999999999876542
Q ss_pred --CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC---Cc-EEEEEeCCCCCCHHHHHHH
Q 020304 129 --APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP---DI-MVECLTSDFRGDLRAVETL 202 (328)
Q Consensus 129 --~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~---~~-~i~~~t~~~~~~~e~l~~L 202 (328)
..++++|+.++++.+.+.|++++.|++|..+ ++.+.+++.++++.|++..+ .+ .+.+ +.+.++.+.++.|
T Consensus 111 ~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~i--nig~lt~eey~~L 186 (469)
T PRK09613 111 KRKKLTQEEIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNV--NIAPTTVENYKKL 186 (469)
T ss_pred CceECCHHHHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEE--EeecCCHHHHHHH
Confidence 2357789999999999999999999887753 22348999999999998532 11 1222 3344799999999
Q ss_pred HHcCCcEEeechhhHHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEcCCCHHHHHHHHHHHHhC---
Q 020304 203 VHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSI--- 275 (328)
Q Consensus 203 ~~aG~~~i~~~~et~~~-~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGlgEt~e~~~~~l~~l~~l--- 275 (328)
+++|++++.+..||.++ .++.++ +++++|++++++++++++ +|+. |++++|+|+|++.+|..+++..++.|
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~--aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~ 264 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME--AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEER 264 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH--cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999865 665554 347899999999999999 9998 99999999999999999999888887
Q ss_pred ---CCCEEeeecccCC---CCCCcccCCCCCHHHH-----------------------HHHHHHHHhcCCceeeecc
Q 020304 276 ---DVDILTLGQYLQP---TPLHLTVKEYVTPEKF-----------------------DFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 276 ---~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~-----------------------~~l~~~~~~~G~~~~~~g~ 323 (328)
|++.+++ ++++| ||+.. ....++++++ ..+++.+..+|+.++..|+
T Consensus 265 ~gvgp~tIsv-prl~P~~Gtpl~~-~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r~~~~~~gvt~~sags 339 (469)
T PRK09613 265 FGVGPHTISV-PRLRPADGSDLEN-FPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELRREVLELGVSQISAGS 339 (469)
T ss_pred hCCCCccccc-cceecCCCCCccc-CCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHHHHHHhhcceeecccc
Confidence 6788888 67777 66531 1112444433 3566667788888887663
No 26
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=229.51 Aligned_cols=227 Identities=18% Similarity=0.309 Sum_probs=188.4
Q ss_pred chhhhhhccCCcchHH--HHHHHhcCCHHHHHHhcCCCCcc-ccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCCC
Q 020304 53 PEWLRQKAPQGQRFQE--VKESLSSLKLNTVCEEAQCPNIG-ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPA 129 (328)
Q Consensus 53 ~~~i~~~~~~g~~~~~--~~~~l~~~~l~~l~~~a~~p~i~-~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~~ 129 (328)
.+-+.+|+.++++++. +..++...++..|...|+ .++ ....+..+.+....++++||.|..+|+||+|...++..
T Consensus 8 ~~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~--~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~ 85 (370)
T COG1060 8 VDEIVEKALNGERLTREDALALLSPADLEELEELAD--KARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDP 85 (370)
T ss_pred HHHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHH--HHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCCCCc
Confidence 4455689999988765 777777778888988888 777 55555556667777778999999999999998865333
Q ss_pred ---CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC--------C-CHH
Q 020304 130 ---PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--------G-DLR 197 (328)
Q Consensus 130 ---~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~--------~-~~e 197 (328)
.++++||.++++++.+.|+++++|+||..|.+. .+++.++++.||+.+|++.+.++++.+. + .+|
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E 162 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEE 162 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHH
Confidence 467899999999999999999999999987775 6899999999999999999988886532 2 378
Q ss_pred HHHHHHHcCCcEEee-chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 198 AVETLVHSGLDVFAH-NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~-~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
.+++|++||++.+.. +.|.+.+ +++.+.+++.+++.|+++++.|++ .||+.++++++|++||.+|+.+++..++++
T Consensus 163 ~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~--lGI~~tatml~Gh~E~~ed~~~hl~~ir~l 240 (370)
T COG1060 163 VLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR--LGIPTTATMLLGHVETREDRIDHLEHIRDL 240 (370)
T ss_pred HHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCCccceeEEEecCCHHHHHHHHHHHHHH
Confidence 899999999999998 5555654 667777889999999999999999 999999999999999999999999999999
Q ss_pred CCCEEeeeccc
Q 020304 276 DVDILTLGQYL 286 (328)
Q Consensus 276 ~~~~i~i~~~l 286 (328)
+-..-++..|+
T Consensus 241 Q~~~gg~~~fI 251 (370)
T COG1060 241 QDETGGFQEFI 251 (370)
T ss_pred HHHhCCcEEEE
Confidence 75544444444
No 27
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.95 E-value=4.3e-27 Score=217.49 Aligned_cols=204 Identities=17% Similarity=0.241 Sum_probs=158.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCC---CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~---~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
...++++|++|+.+|.||+++...+ ...++++++.+.++++.+.|+++|.|+||+.+.+. .+++.++++.|++.
T Consensus 5 ~n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 5 VNRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQE 81 (309)
T ss_pred ceeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHH
Confidence 4567788999999999999986443 23457788999999998999999999988765433 68999999999999
Q ss_pred CCCcEEEEEeC---------CCCCCHHHHHHHHHcCCcEEe-echhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 020304 180 KPDIMVECLTS---------DFRGDLRAVETLVHSGLDVFA-HNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 180 ~~~~~i~~~t~---------~~~~~~e~l~~L~~aG~~~i~-~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
.+++.+.++++ .+..+++.++.|++||++++. .+.|+++ ++++.+.+++.++++|+++++.+++ .|+
T Consensus 82 ~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~--~Gi 159 (309)
T TIGR00423 82 FPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR--LGI 159 (309)
T ss_pred CCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH--cCC
Confidence 88888877653 233468999999999999997 4999985 4776665457799999999999999 999
Q ss_pred eEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee-----cccCC-CC-CCcccCCCCCHHHHHHHHHHH
Q 020304 249 ITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG-----QYLQP-TP-LHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 249 ~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~-----~~l~P-Tp-~~~~~~~~~~~~~~~~l~~~~ 311 (328)
++++++|+|+|||.+|+.+++..+++++.+..++. +|+.+ || +.....+..++.+.-+..+++
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~ 229 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAIS 229 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998754443 34422 66 432112445554443333333
No 28
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.6e-27 Score=223.76 Aligned_cols=262 Identities=19% Similarity=0.313 Sum_probs=190.9
Q ss_pred ceecccccCCCCCCCCchhhhhhccCCcchHHHHHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCC
Q 020304 37 RQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRG 116 (328)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~ 116 (328)
-..|+.++|.+...++|+-|.+.....+......+.+..... .+ +...+.++ .++++.++.||+++
T Consensus 92 ~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~-----~~A~v~I~eGCn~~ 157 (437)
T COG0621 92 APEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKF------DK---LPPRREGG-----VRAFVKIQEGCNKF 157 (437)
T ss_pred CCCceEEECCccHHHHHHHHHHHhhccccccccccccccccc------cc---CCCCcCCC-----eEEEEEhhcCcCCC
Confidence 446889999999999887775433222211111111111011 11 22224444 89999999999999
Q ss_pred CCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---HHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 020304 117 CRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---SGHFARTVKAMKKQKPDIMVECLTSDF 192 (328)
Q Consensus 117 C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---~~~l~~li~~ik~~~~~~~i~~~t~~~ 192 (328)
|+||.+++.+|... +.+++|+++++.+.+.|+++|+|+|.+...|..+. ...|.+|++.|.+. +|+.+..++...
T Consensus 158 CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I-~G~~riR~~~~~ 236 (437)
T COG0621 158 CTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKI-PGIERIRFGSSH 236 (437)
T ss_pred CCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcC-CCceEEEEecCC
Confidence 99999999888755 45678999999999999999999998877775321 25699999999884 665554444322
Q ss_pred --CCCHHHHHHHHHcC-CcEE-eechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHH
Q 020304 193 --RGDLRAVETLVHSG-LDVF-AHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLK 266 (328)
Q Consensus 193 --~~~~e~l~~L~~aG-~~~i-~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~ 266 (328)
-.++++++.+++.. +-.+ .+.+++.+ ++.+.++ .+++.+++++.++.+++..+++.+++++|+|+ |||+|||+
T Consensus 237 P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe 315 (437)
T COG0621 237 PLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFE 315 (437)
T ss_pred chhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHH
Confidence 24899999999974 4444 44666653 3333332 38999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhCCCCEEeeeccc-CC-CCCC-c--ccCCCCCHHHHHHHHHHHHhc
Q 020304 267 EAMADLRSIDVDILTLGQYL-QP-TPLH-L--TVKEYVTPEKFDFWKAYGESI 314 (328)
Q Consensus 267 ~~l~~l~~l~~~~i~i~~~l-~P-Tp~~-~--~~~~~~~~~~~~~l~~~~~~~ 314 (328)
++++++++.+++.+++|.|. +| ||.+ + ++...+..++++.|.++..+.
T Consensus 316 ~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~ 368 (437)
T COG0621 316 ETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQI 368 (437)
T ss_pred HHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 35 8887 2 344555667777777776543
No 29
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.94 E-value=2.8e-25 Score=204.44 Aligned_cols=221 Identities=19% Similarity=0.208 Sum_probs=160.2
Q ss_pred CHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCCC-----CCCCCCCchHHHHHHHHHCCCcE
Q 020304 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENTAKAIASWGVDY 150 (328)
Q Consensus 77 ~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~~-----~~~~~~~ei~~~~~~~~~~G~~~ 150 (328)
++.++...|+ .+++.... ++.+...+.+++ |++|+++|.||+++.... ...++++++.++++++.+.|++.
T Consensus 5 ~~~~l~~~a~--~~~~~~~~-~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 5 PLLDLLYEAF--QIHRKHFD-PRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred cHHHHHHHHH--HHHHHhcC-CCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 6667777776 66665432 257888888886 999999999999976431 12245678888888888899998
Q ss_pred EEE-EeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCC
Q 020304 151 IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRA 229 (328)
Q Consensus 151 i~l-~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~ 229 (328)
+++ ++|..+. .+...+++.++.+.+++. ++.+.+ +. +.+++|.++.|++||++.+.+++|+.+++++.++ +++
T Consensus 82 ~~l~~~g~~~~-~~~~~~~~~~i~~~~~~~--~i~~~~-~~-g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~ 155 (296)
T TIGR00433 82 FCLVASGRGPK-DREFMEYVEAMVQIVEEM--GLKTCA-TL-GLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STH 155 (296)
T ss_pred EEEEEecCCCC-hHHHHHHHHHHHHHHHhC--CCeEEe-cC-CCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCC
Confidence 765 4444332 211123444444444433 566533 33 3569999999999999999999995455776666 468
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCCcccCCCCCHHHHHH
Q 020304 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDF 306 (328)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~~~ 306 (328)
++++++++++.+++ .|+.+++++|+|++||.+++.++++++++++++.+.++.+ .| |+++. ...++.+++.+
T Consensus 156 s~~~~~~ai~~l~~--~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l-~p~~gT~l~~--~~~~s~~~~~~ 230 (296)
T TIGR00433 156 TYDDRVDTLENAKK--AGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFL-VKIKGTPLAD--NKELSADDALK 230 (296)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeee-EEcCCCccCC--CCCCCHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999988644 35 66642 33445544444
Q ss_pred HHHHH
Q 020304 307 WKAYG 311 (328)
Q Consensus 307 l~~~~ 311 (328)
+.+.+
T Consensus 231 ~ia~~ 235 (296)
T TIGR00433 231 TIALA 235 (296)
T ss_pred HHHHH
Confidence 43333
No 30
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.93 E-value=2.1e-24 Score=220.02 Aligned_cols=247 Identities=17% Similarity=0.206 Sum_probs=186.7
Q ss_pred hhhhccCCcchHH--HHHHHh--cCCHHHHHHhcCCCCccccccCC---CCce--eeEEEEEeCCCCCCCCCCCccCCCC
Q 020304 56 LRQKAPQGQRFQE--VKESLS--SLKLNTVCEEAQCPNIGECWNGG---GDGI--ATATIMLLGDTCTRGCRFCAVKTSR 126 (328)
Q Consensus 56 i~~~~~~g~~~~~--~~~~l~--~~~l~~l~~~a~~p~i~~~~~~~---~~~~--~~~~~i~~t~gC~~~C~FC~~~~~~ 126 (328)
+.+|+.+|++++. +..++. ..+++.|+..|+ .+|+.++|+ .+.+ ....++++||.|..+|.||+|+..+
T Consensus 17 ~l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~--~vR~~~~G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~ 94 (843)
T PRK09234 17 ALRRARDGVTLDVDEAAVLLTARGDDLADLCASAA--RVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVP 94 (843)
T ss_pred HHHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHH--HHHHHHcCCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCC
Confidence 5578888988755 556663 347899999999 999888864 1123 2235777899999999999998654
Q ss_pred CC---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCC-------------CCcHHHHHHHHHHHHHhCCCcEEEEEeC
Q 020304 127 NP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGSGHFARTVKAMKKQKPDIMVECLTS 190 (328)
Q Consensus 127 ~~---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~-------------~~~~~~l~~li~~ik~~~~~~~i~~~t~ 190 (328)
+. ..++++|+.+.+++..+.|+++++|++|..|... +...+++.++++.+++.. ++..++ +
T Consensus 95 ~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~-gl~p~i--~ 171 (843)
T PRK09234 95 GKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEET-GLLPHL--N 171 (843)
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhc-CCCcee--e
Confidence 32 2357889999999999999999999999876542 113689999999999863 333332 2
Q ss_pred CCCCCHHHHHHHHHcCCcEEeechhhH-HHHHhh-----hcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHH
Q 020304 191 DFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRI-----VRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDD 264 (328)
Q Consensus 191 ~~~~~~e~l~~L~~aG~~~i~~~~et~-~~~~~~-----~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~ 264 (328)
.+.++.+.++.|+++|++ +.+++|+. +++++. ...++..+++++++++.+++ .|+++++++|+|+|||.+|
T Consensus 172 ~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~--lGi~~tsG~L~GiGEt~ed 248 (843)
T PRK09234 172 PGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGR--LSVPFTTGILIGIGETLAE 248 (843)
T ss_pred eCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHH--cCCCccceEEEECCCCHHH
Confidence 244699999999999997 67899995 456531 11245679999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhC-----CCCEEeeecccC-C-CCCCcccCCCCCHHHHHHHHHHHH
Q 020304 265 LKEAMADLRSI-----DVDILTLGQYLQ-P-TPLHLTVKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 265 ~~~~l~~l~~l-----~~~~i~i~~~l~-P-Tp~~~~~~~~~~~~~~~~l~~~~~ 312 (328)
+.+++..|+++ +++.+.+.+|.. | ||+. ..+..+++++-...++++
T Consensus 249 Rve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~--~~~~~s~~e~Lr~iAvaR 301 (843)
T PRK09234 249 RAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMA--GVPDAGLEELLATIAVAR 301 (843)
T ss_pred HHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCC--CCCCCCHHHHHHHHHHHH
Confidence 99999999999 467777766762 2 7764 345566666555444443
No 31
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2.5e-24 Score=209.61 Aligned_cols=210 Identities=17% Similarity=0.243 Sum_probs=161.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--c-HHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--G-SGHFARTVKAMKK 178 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~-~~~l~~li~~ik~ 178 (328)
..+++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|.|+|.+...|... + ...+.++++.|.+
T Consensus 212 ~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~ 291 (509)
T PRK14327 212 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK 291 (509)
T ss_pred eEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh
Confidence 789999999999999999998766554 35678899999999999999999999776555321 1 1357888888877
Q ss_pred hC-CCcEEEEEeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 179 QK-PDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 179 ~~-~~~~i~~~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
.. +.+.+....|.. +++++++.|+++| +.++.+++|+.+. +.+.++ ++++.++++++++.+++.++|+.+++++
T Consensus 292 ~~i~~ir~~s~~P~~-i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~i~i~tdi 369 (509)
T PRK14327 292 IDIPRVRFTTSHPRD-FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPNVALTTDI 369 (509)
T ss_pred CCCceEEEeecCccc-CCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCcEEeeeE
Confidence 52 223333322333 5899999999999 6789999999854 555454 4799999999999999966799999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCc---ccCCCCCHHHHHHHHHHHHhc
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL---TVKEYVTPEKFDFWKAYGESI 314 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~---~~~~~~~~~~~~~l~~~~~~~ 314 (328)
|+|+ |||++++.++++++++++++.++++.|. .| ||++. ++...+..+++.++.++..+.
T Consensus 370 IvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~ 435 (509)
T PRK14327 370 IVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEY 435 (509)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999997776 25 88752 122233345666666666543
No 32
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.92 E-value=5.4e-24 Score=197.70 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=151.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC---CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCC-------------CCcH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGS 166 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~---~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~-------------~~~~ 166 (328)
...++++||+|+.+|.||+|+..++.. .++++++.+.++++.+.|+++++++||..++.. +...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 567888999999999999998865443 457789999999999999999999988866542 0113
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhc---CCCCCHHHHHHHHHHHH
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR---DPRAGYEQSLEVLKHAK 242 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~---~~~~~~~~~l~~i~~~~ 242 (328)
+++.++++.+++.. ++.. +.+.+ .++++.++.|+++|++ +.+++|++++ +.+.++ .++.++++++++++.++
T Consensus 84 ~~~~~~~~~i~~e~-~~~~-~~~~g-~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLP-HTNPG-VMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCcc-ccCCC-CCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 78888999998763 3333 23333 4699999999999986 5788999865 332221 23456899999999999
Q ss_pred HhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCCcccCCCCCHHHHHHHHHHH
Q 020304 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 243 ~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-----~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
+ .|+.+++++|+|+|||.+|+.+++..+++++ ++.+.+++|. | ||+. ..+.+++.+..+..+++
T Consensus 160 ~--~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~-P~~gTpl~--~~~~~s~~e~lr~iAv~ 231 (322)
T TIGR03550 160 R--LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFR-AKPGTPME--NHPEPSLEEMLRTVAVA 231 (322)
T ss_pred H--cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccc-cCCCCCcc--CCCCCCHHHHHHHHHHH
Confidence 9 9999999999999999999999999999998 5555555564 5 7764 23455665554444444
No 33
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1e-23 Score=203.47 Aligned_cols=209 Identities=16% Similarity=0.225 Sum_probs=162.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc-HHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG-SGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~-~~~l~~li~~ik~~~ 180 (328)
..+++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|++++.|+|.+...|.+.. ...+.++++.+.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 5788999999999999999987666544 45678899999999999999999998866554321 245788888887654
Q ss_pred CCcEEEE--EeCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 181 PDIMVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 181 ~~~~i~~--~t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
++..+.+ ..+.. +++++++.|+++ |+..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++|
T Consensus 229 ~~~rir~~~~~p~~-l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pgi~i~td~I 306 (445)
T PRK14340 229 PEMRIRFTTSHPKD-ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPGVTLSTDLI 306 (445)
T ss_pred CCcEEEEccCChhh-cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEeccEE
Confidence 4444433 33333 489999999997 79999999999754 544454 47899999999999999556999999999
Q ss_pred EEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCC----HHHHHHHHHHHHh
Q 020304 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVT----PEKFDFWKAYGES 313 (328)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~----~~~~~~l~~~~~~ 313 (328)
+|+ |||++++.++++++++++++.++++.|.. | |+++....++++ .++..++.++..+
T Consensus 307 vGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~ 371 (445)
T PRK14340 307 AGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNG 371 (445)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999987762 4 887621233444 4556666666554
No 34
>PRK06267 hypothetical protein; Provisional
Probab=99.92 E-value=2e-23 Score=195.66 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=168.5
Q ss_pred CCHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCC--CCCCCCccCCCCCC------CCCCCCchHHHHHHHHHCC
Q 020304 76 LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCT--RGCRFCAVKTSRNP------APPDPMEPENTAKAIASWG 147 (328)
Q Consensus 76 ~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~--~~C~FC~~~~~~~~------~~~~~~ei~~~~~~~~~~G 147 (328)
.++..|+..|+ .++++++| +.+..+++++.|++|+ .+|.||+++..++. ..+++++++++++.+.+.|
T Consensus 4 ~~~~~L~~~A~--~ir~~~fG--~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~G 79 (350)
T PRK06267 4 EEILENSIKAF--KLTEKHHG--NIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIG 79 (350)
T ss_pred hHHHHHHHHHH--HHHHHHcC--CeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcC
Confidence 36788899999 99999997 5788899999999999 99999999874322 2356788999999999999
Q ss_pred CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcC
Q 020304 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD 226 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~ 226 (328)
++.++++||.. +. .+.+.++++.+++.. +..+. .+. +.++.+.+..++.+|+ .+++||.++ ++..++
T Consensus 80 v~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~-~s~-G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~- 147 (350)
T PRK06267 80 WKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQY-LNV-GIIDFLNINLNEIEGV---VGAVETVNPKLHREIC- 147 (350)
T ss_pred CCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceE-eec-ccCCHHHHhhccccCc---eeeeecCCHHHHHhhC-
Confidence 99888898875 43 367788888887652 33222 222 3347777777777775 468999954 677776
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCCcccCCCCCHHH
Q 020304 227 PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEK 303 (328)
Q Consensus 227 ~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~ 303 (328)
+++++++++++++.+++ .|+.+++++|+|+|||.+|+.++++++++++++.++++.+ .| ||+. ..+.+++++
T Consensus 148 ~~~s~ed~~~~l~~ak~--aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L-~P~pGTp~~--~~~~~s~~e 222 (350)
T PRK06267 148 PGKPLDKIKEMLLKAKD--LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSL-NPQKGTIFE--NKPSVTTLE 222 (350)
T ss_pred CCCCHHHHHHHHHHHHH--cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEee-eECCCCcCC--CCCCCCHHH
Confidence 47899999999999999 9999999999999999999999999999999999888644 45 6654 234566666
Q ss_pred HHHHHHHHH
Q 020304 304 FDFWKAYGE 312 (328)
Q Consensus 304 ~~~l~~~~~ 312 (328)
+.++.++++
T Consensus 223 ~lr~ia~~R 231 (350)
T PRK06267 223 YMNWVSSVR 231 (350)
T ss_pred HHHHHHHHH
Confidence 665555544
No 35
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=3.3e-23 Score=200.82 Aligned_cols=211 Identities=15% Similarity=0.190 Sum_probs=160.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC----cHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG----GSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~----~~~~l~~li~~ik 177 (328)
.++++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|+|+|.+...|... ....+.++++.|.
T Consensus 152 ~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~ 231 (455)
T PRK14335 152 FQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIV 231 (455)
T ss_pred ceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHH
Confidence 6788999999999999999987665433 4567889999999999999999998876555311 1135788888875
Q ss_pred Hh---CCCcEEEEEe--CCCCCCHHHHHHHHHc--CCcEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 020304 178 KQ---KPDIMVECLT--SDFRGDLRAVETLVHS--GLDVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 178 ~~---~~~~~i~~~t--~~~~~~~e~l~~L~~a--G~~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (328)
+. ..++.+..++ ....+++++++.|+++ |+.++.+++|+.+ ++.+.++ ++++.+++.++++.+++..+|+.
T Consensus 232 ~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pgi~ 310 (455)
T PRK14335 232 RRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPNVA 310 (455)
T ss_pred HhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCCE
Confidence 32 2345554332 2233589999999984 7999999999974 4554454 47899999999999999556999
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCc---ccCCCCCHHHHHHHHHHHHhc
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHL---TVKEYVTPEKFDFWKAYGESI 314 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~---~~~~~~~~~~~~~l~~~~~~~ 314 (328)
+.+++|+|+ |||++++.++++++++++++.++++.|.. | |+++. ++.+.+..++...|.+++.+.
T Consensus 311 i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~ 381 (455)
T PRK14335 311 LSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSI 381 (455)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999987762 4 88762 122333345566666666543
No 36
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=5.6e-23 Score=199.69 Aligned_cols=209 Identities=14% Similarity=0.210 Sum_probs=160.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--c-----HHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--G-----SGHFARTVK 174 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~-----~~~l~~li~ 174 (328)
..+++.+++|||++|+||.++..++..+ +++++++++++.+.+.|+++|+|+|.+.+.+... + ...+.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 5789999999999999999987665433 5678899999999999999999998765444311 1 236888898
Q ss_pred HHHHhCCCcEEEE--EeCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 020304 175 AMKKQKPDIMVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 175 ~ik~~~~~~~i~~--~t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (328)
.+.+..++..+.+ ..+.. +++++++.|+++ |+.++.+++|+.++ +.+.++ ++++.++++++++.+++..+|+.
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~-l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~~~ 325 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKD-MTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPDCG 325 (467)
T ss_pred HHHhcCCCcEEEEecCCccc-CCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCE
Confidence 8877544444433 22333 589999999998 79999999999864 554454 47899999999999999666888
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCCH----HHHHHHHHHHHh
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGES 313 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~~----~~~~~l~~~~~~ 313 (328)
+++++|+|+ |||.+++.++++++++++++.++++.|. .| |+++......++. ++...|.+++.+
T Consensus 326 i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~ 396 (467)
T PRK14329 326 ISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQE 396 (467)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998776 25 8876222334443 445556555544
No 37
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=1.5e-23 Score=196.75 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=165.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC--CCCC----CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APPD----PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~--~~~~----~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
+.++...-+.|+.+|.||.+...... ...+ .+++..+++.+....++.|+|.||+|..++ .+.+.++++.+
T Consensus 6 ~~~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i 82 (353)
T PRK05904 6 TKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTI 82 (353)
T ss_pred eeEEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHH
Confidence 56666678889999999999764211 1111 122333333222244678899999987665 58889999999
Q ss_pred HHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 020304 177 KKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (328)
Q Consensus 177 k~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (328)
++.++ +..+.+.++...++++.++.|+++|++++++|+|++++ +.+.++ +.++.++.+++++.+++ .|+. ++++
T Consensus 83 ~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~--~G~~~v~~d 159 (353)
T PRK05904 83 KPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK--NGIYNISCD 159 (353)
T ss_pred HHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEE
Confidence 88653 33455555555569999999999999999999999854 555554 47999999999999999 9997 9999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccC---CCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK---EYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~---~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+|+|+ |||.+++.++++++.+++++.+.++.+. .| |++..... +....+.++.+++...+.||.+|++.+++|
T Consensus 160 lI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 238 (353)
T PRK05904 160 FLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTN 238 (353)
T ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcC
Confidence 99999 9999999999999999999999997665 35 77752211 112244567788889999999999999987
No 38
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.91 E-value=2e-23 Score=200.71 Aligned_cols=211 Identities=18% Similarity=0.287 Sum_probs=161.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
..+++.+++|||++|+||..+..++.. .++++++.++++.+.+.|++++.|+|.+...+.+. ...++.++++.+++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 567889999999999999998766543 35678899999999999999999998765545421 125688999988865
Q ss_pred CCCcE-EEEEe-CCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDIM-VECLT-SDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~~-i~~~t-~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++. +...+ ....+++++++.|+++| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 218 -~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~gi~i~~~~ 295 (414)
T TIGR01579 218 -PGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRPDYAFGTDI 295 (414)
T ss_pred -CCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeeeeeE
Confidence 4443 22211 12235899999999987 7889999999865 555554 4789999999999999877899999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcc---cCCCCCHHHHHHHHHHHHhcC
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLT---VKEYVTPEKFDFWKAYGESIG 315 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~---~~~~~~~~~~~~l~~~~~~~G 315 (328)
|+|+ |||+|++.++++++++++++.++++.|.. | ||++.. +...+..+...+|++++.+..
T Consensus 296 IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~ 362 (414)
T TIGR01579 296 IVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNY 362 (414)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999987762 4 887631 222233455666666665543
No 39
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=6e-23 Score=198.27 Aligned_cols=208 Identities=14% Similarity=0.229 Sum_probs=159.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~ 181 (328)
..+++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++|.|+|.+...+... ...+.++++.+.+. +
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~-~ 231 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDE-T 231 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcC-C
Confidence 5788999999999999999987666544 4678899999999999999999999887666432 24578888877654 2
Q ss_pred Cc-EEEE--EeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 182 DI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 182 ~~-~i~~--~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
++ ++.. ..+.. +++++++.|+++| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++|
T Consensus 232 ~~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~i~i~td~I 309 (449)
T PRK14332 232 TIERIRFTSPHPKD-FPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPDVGITTDII 309 (449)
T ss_pred CcceEEEECCCccc-CCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 32 2322 22333 4899999999998 8899999999854 554444 47899999999999999667899999999
Q ss_pred EEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCC----HHHHHHHHHHHHhc
Q 020304 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVT----PEKFDFWKAYGESI 314 (328)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~----~~~~~~l~~~~~~~ 314 (328)
+|+ |||++++.++++++++++++.++++.|. +| |+.+.....+++ .++++++.++..+.
T Consensus 310 vGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~ 375 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSI 375 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999998887 24 887511122343 34555666655443
No 40
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=6.3e-23 Score=196.91 Aligned_cols=209 Identities=14% Similarity=0.211 Sum_probs=158.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-----cHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-----GSGHFARTVKAM 176 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-----~~~~l~~li~~i 176 (328)
.++++.+++|||++|+||.++..++.. .+++++++++++.+.+.|+++|.|+|.+...|+.+ ....+.++++.+
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 689999999999999999999866543 34567889999999999999999998775544321 113588888888
Q ss_pred HHhCCCcE-EEEE-eCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 177 KKQKPDIM-VECL-TSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 177 k~~~~~~~-i~~~-t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
.+. +++. +... .....+++++++.|+++ |+..+.+++|+.++ +.+.++ ++++.++++++++.+++..+|+.+.
T Consensus 207 ~~~-~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~i~i~ 284 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPEVSIS 284 (420)
T ss_pred hcC-CCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 764 3442 3221 12223589999999998 58899999999754 554454 4789999999999999966699999
Q ss_pred EeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCC-cc--cCCCCCHHHHHHHHHHHHh
Q 020304 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLH-LT--VKEYVTPEKFDFWKAYGES 313 (328)
Q Consensus 252 ~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~-~~--~~~~~~~~~~~~l~~~~~~ 313 (328)
+++|+|+ |||++++.++++++++++++.++++.|.. | ||++ +. +...+..++..++.++..+
T Consensus 285 ~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~ 352 (420)
T PRK14339 285 TDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKE 352 (420)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999888887762 4 8865 21 2223334556666666554
No 41
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=2.6e-23 Score=200.88 Aligned_cols=209 Identities=14% Similarity=0.192 Sum_probs=159.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-cHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-~~~~l~~li~~ik~~~ 180 (328)
..+++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|+++|.|+|.+...+... ....+.++++.+.+.
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~- 224 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEI- 224 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcC-
Confidence 5788899999999999999987665433 4567889999999999999999998776554321 113578888888765
Q ss_pred CC---cEEEEEeCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 181 PD---IMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 181 ~~---~~i~~~t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
++ +.+....+.. +++++++.|+++ |+..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 225 ~g~~~i~~~~~~p~~-l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 225 DGVERIRFTTGHPRD-LDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred CCccEEEEeccCccc-CCHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 33 3333323333 589999999999 49999999999854 555554 4789999999999999955599999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCC----HHHHHHHHHHHHhcC
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVT----PEKFDFWKAYGESIG 315 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~----~~~~~~l~~~~~~~G 315 (328)
|+|+ |||++++.++++++++++++.++++.|.. | |+++.. ...++ .++...+.+++.+..
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~-~~~~~~~~~~~r~~~l~~~~~~~~ 369 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYM-EGQEPDEVKTKRMNRLLELQKEIT 369 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999988877762 4 887621 22333 344566666665543
No 42
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.90 E-value=3.8e-22 Score=189.21 Aligned_cols=216 Identities=12% Similarity=0.126 Sum_probs=163.5
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCC----CCCchHHHHHHHH----HCCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPP----DPMEPENTAKAIA----SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~----~~~ei~~~~~~~~----~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
++...-+.|+.+|.||.+......... +.+.+.++++... ..+++.|+|.||+|..++ .+.+.++++.+
T Consensus 8 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l 84 (378)
T PRK05660 8 SLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGV 84 (378)
T ss_pred EEEEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHH
Confidence 455567889999999999764321111 1222233333211 146789999999987665 58999999999
Q ss_pred HHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 020304 177 KKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (328)
Q Consensus 177 k~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (328)
++.+ ++..+.+.++...++++.++.|+++|++++++|+|++++ ..+.++ +.++.++.+++++.+++ .|+. ++
T Consensus 85 ~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~--~G~~~v~ 161 (378)
T PRK05660 85 RARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG--LGLRSFN 161 (378)
T ss_pred HHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEE
Confidence 9865 334666666666679999999999999999999999965 555555 47999999999999999 9996 78
Q ss_pred EeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCCH----HHHHHHHHHHHhcCCceeeeccc
Q 020304 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGESIGFRYVASGPL 324 (328)
Q Consensus 252 ~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~g~~ 324 (328)
+++|+|+ |+|.+++.++++++.+++++.+.++++. .| |++.......... +.++...+...+.||.+|+..+|
T Consensus 162 ~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 162 LDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
Confidence 9999999 9999999999999999999999998665 24 7775321111222 23455667788899999999999
Q ss_pred cc
Q 020304 325 VS 326 (328)
Q Consensus 325 ~~ 326 (328)
+|
T Consensus 242 a~ 243 (378)
T PRK05660 242 AK 243 (378)
T ss_pred cC
Confidence 87
No 43
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=198.46 Aligned_cols=187 Identities=18% Similarity=0.273 Sum_probs=148.8
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC--CcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~--~~~~~l~~li~~ik~~ 179 (328)
..+++.+++|||++|+||..+..++.. .+++++++++++.+.+.|+++|.|+|.+...|.. .+...+.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999998876543 3567889999999999999999999876544421 1235788888887765
Q ss_pred CCCc---EEEEEeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 180 KPDI---MVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 180 ~~~~---~i~~~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+++ .+....+.. +++++++.|+++| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 237 -~~l~~ir~~~~~p~~-~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 237 -DGLERVRFTSPHPAE-FTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred -CCccEEEEeccChhh-CCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 233 333322333 4899999999998 8889999999754 554454 479999999999999996668999999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
+|+|+ |||++++.++++++++++++.+.++.|. .| |+++
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~ 355 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAA 355 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHH
Confidence 99999 9999999999999999999988887665 24 8876
No 44
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.9e-22 Score=188.23 Aligned_cols=214 Identities=10% Similarity=0.137 Sum_probs=163.2
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCC---CCCCchHHHHHHHHH----CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
...-+.|+.+|.||.+........ .+.+.+.++++...+ .+++.|+|.||+|..++ .+++.++++.|++.
T Consensus 4 YiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~ 80 (350)
T PRK08446 4 YIHIPFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPY 80 (350)
T ss_pred EEEeCCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHh
Confidence 344688999999999976421111 233444555553322 36788999999986665 58888888888775
Q ss_pred C-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEE
Q 020304 180 K-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIML 256 (328)
Q Consensus 180 ~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~iv 256 (328)
. ++..+.+.++...++++.++.|+++|++++++|+|++++ ..+.+. +.++.++..++++.+++ .|+. +++++|+
T Consensus 81 ~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~--~g~~~v~iDli~ 157 (350)
T PRK08446 81 LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK--AGFENISIDLIY 157 (350)
T ss_pred cCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCEEEEEeec
Confidence 2 345566656666679999999999999999999999965 544443 47899999999999999 9996 8999999
Q ss_pred Ec-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCC-HHHHHHHHHHHHhcCCceeeeccccc
Q 020304 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVT-PEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~-~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|+ |||.+++.++++++.+++++.+.++.+. .| |++......... .+.+....+...+.||.+|++.+++|
T Consensus 158 GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 99 9999999999999999999999997654 24 777532222222 34456667888899999999999987
No 45
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.90 E-value=1.8e-22 Score=195.06 Aligned_cols=208 Identities=15% Similarity=0.242 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCC-CC---CcHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PD---GGSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l-~~---~~~~~l~~li~~ik 177 (328)
.++++.+++||+++|+||.++..++..+ ++++++.++++.+.+.|+++++|+|.+...+ .. +....+.++++.+.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 5788999999999999999987665443 4567889999999999999999998776555 21 11246888899887
Q ss_pred HhCCCcEEEEEe--CCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 020304 178 KQKPDIMVECLT--SDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (328)
Q Consensus 178 ~~~~~~~i~~~t--~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (328)
+. +++.+..++ ....++++.++.|+++| +..+.+++|+.++ +.+.++ ++++.++++++++.+++..+|+.+.+
T Consensus 225 ~~-~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~i~i~~ 302 (438)
T TIGR01574 225 TI-DGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPNVSIST 302 (438)
T ss_pred hc-CCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEee
Confidence 64 455433332 22335899999999999 9999999999854 544454 47899999999999998556899999
Q ss_pred eEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCC----HHHHHHHHHHHHh
Q 020304 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVT----PEKFDFWKAYGES 313 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~----~~~~~~l~~~~~~ 313 (328)
++|+|+ |||++++.++++++++++++.++++.|. .| |+++. ..+.++ .++...+.+++.+
T Consensus 303 d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~l~~~~~~ 369 (438)
T TIGR01574 303 DIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAAD-MPDQIPEEIKKRRLQRLQARHNE 369 (438)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhh-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999988776 24 88763 122333 3344555555543
No 46
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=196.58 Aligned_cols=208 Identities=13% Similarity=0.254 Sum_probs=159.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC---CcHHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD---GGSGHFARTVKAMKK 178 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~---~~~~~l~~li~~ik~ 178 (328)
..+++.+++|||++|+||..+..++..+ +++++++++++.+.+.|+++|.|+|.+...|.. +....+.++++.|.+
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~ 227 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA 227 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh
Confidence 6789999999999999999987665543 456889999999999999999999876544421 112468888888876
Q ss_pred hCCCc-EEE--EEeCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 020304 179 QKPDI-MVE--CLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (328)
Q Consensus 179 ~~~~~-~i~--~~t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (328)
. +++ .+. ...+.. +++++++.|+++ |+.++.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+
T Consensus 228 ~-~g~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 228 L-PGLERLRFTTPHPKD-IAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred c-CCCcEEEEccCCccc-CCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 5 343 233 222333 479999999985 58999999999854 555454 47899999999999999666899999
Q ss_pred eEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCc---ccCCCCCHHHHHHHHHHHHh
Q 020304 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHL---TVKEYVTPEKFDFWKAYGES 313 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~---~~~~~~~~~~~~~l~~~~~~ 313 (328)
++|+|+ |||++++.++++++++++++.++++.|. +| |+.+. ++.+.+..++..+|.+++.+
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~ 371 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNE 371 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998776 25 88752 12223344556666666554
No 47
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.7e-22 Score=195.83 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=157.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC----CcHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD----GGSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~----~~~~~l~~li~~ik 177 (328)
..+++.+++|||++|+||..+..++.. .++++++.++++.+.+.|++++.|++.+...+.. +....+.++++.+.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 567888999999999999998765543 3567889999999999999999999876544421 11347889999887
Q ss_pred HhCCCc---EEEEEeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 178 KQKPDI---MVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 178 ~~~~~~---~i~~~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
+. +++ .+....+.. +++++++.|+++| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.
T Consensus 227 ~~-~~~~~ir~~~~~p~~-~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 227 AI-DGIERIRYTTSHPRD-FTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred hc-CCccEEEEccCCccc-CCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 75 343 333323333 5899999999986 8999999999865 555554 4789999999999999855589999
Q ss_pred EeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCC----HHHHHHHHHHHHh
Q 020304 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVT----PEKFDFWKAYGES 313 (328)
Q Consensus 252 ~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~----~~~~~~l~~~~~~ 313 (328)
+++|+|+ |||++++.++++++++++++.++++.|.. | |+++. ..+.++ .++...++++..+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~l~~~~~~ 371 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAAD-LPDDVPEEVKKERLQRLQALINQ 371 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhh-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999998877762 4 88762 123343 3445555555543
No 48
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=3.1e-22 Score=192.02 Aligned_cols=208 Identities=13% Similarity=0.227 Sum_probs=159.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
..+++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++|+|+|.+...|... ..+.+.++++.+++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 6788999999999999999987665543 4668899999999999999999998875544321 124688999988764
Q ss_pred CCCc-EEEE--EeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 180 KPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 180 ~~~~-~i~~--~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
++. .+.. ..+.. ++++.++.|++++ +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.++
T Consensus 204 -~~~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pgi~i~~d 280 (418)
T PRK14336 204 -PGLLRIRFLTSHPKD-ISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPDISLQTD 280 (418)
T ss_pred -CCccEEEEeccChhh-cCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 443 3432 22433 4899999999964 8899999999754 544444 478999999999999995569999999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCC----HHHHHHHHHHHHh
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVT----PEKFDFWKAYGES 313 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~----~~~~~~l~~~~~~ 313 (328)
+|+|+ |||.+++.++++++++++++.++++.|.. | |+++....+.++ .++.+.+.+++.+
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~ 347 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKE 347 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999987762 4 777521233444 4455556655554
No 49
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=4.7e-22 Score=192.05 Aligned_cols=210 Identities=15% Similarity=0.198 Sum_probs=158.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
.++++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|++++.|+|.+...|... +...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 6788999999999999999987665443 4567889999999999999999998765544311 124677888877654
Q ss_pred CCCcEEEEEe--CCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDIMVECLT--SDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~~i~~~t--~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++....++ ....++++.++.|+++| +.++.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++
T Consensus 220 -~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d~ 297 (434)
T PRK14330 220 -EGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPDASISSDI 297 (434)
T ss_pred -CCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 344322222 12234899999999998 7889999999854 554454 4789999999999999966799999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCCH----HHHHHHHHHHHhc
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGESI 314 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~~----~~~~~l~~~~~~~ 314 (328)
|+|+ |||++++.++++++++++++.++++.|. .| |+++....+.++. +++.+|.+++.+.
T Consensus 298 IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~ 364 (434)
T PRK14330 298 IVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRI 364 (434)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998776 24 8876322333433 4455666665543
No 50
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.89 E-value=6.9e-22 Score=190.77 Aligned_cols=188 Identities=15% Similarity=0.241 Sum_probs=148.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
.++++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++|+|++.+...+... ..+++.++++.|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 5778999999999999999987655433 4668889999999999999999987654333210 136799999999876
Q ss_pred CCCcEEEE--EeCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDIMVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~~i~~--~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++.+.. ......+++++++.|+++| +..+.+++|+.++ +.+.++ ++++.++++++++.+++..+|+.+.+++
T Consensus 215 -~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 215 -GGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred -CCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 3343321 1222335899999999996 7888899999854 555555 4789999999999999944578899999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCC
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLH 292 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~ 292 (328)
|+|+ |||.+++.++++++++++++.++++.|.. | |+++
T Consensus 293 I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~ 333 (430)
T TIGR01125 293 IVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAF 333 (430)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccc
Confidence 9999 99999999999999999999999987762 4 7775
No 51
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.89 E-value=2e-22 Score=194.59 Aligned_cols=205 Identities=16% Similarity=0.250 Sum_probs=153.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCC-C---------Cc--HHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-D---------GG--SGHF 169 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~-~---------~~--~~~l 169 (328)
.++++.+++|||++|+||..+..++..+ +++++++++++.+.+.|+++++|+|.+...|. + +. .+++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 6788999999999999999987665433 46688899999999999999999976543332 1 00 2689
Q ss_pred HHHHHHHHHhCCCcEEEE--EeCCCCCCHHHHHHHHHcCCc--EEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 170 ARTVKAMKKQKPDIMVEC--LTSDFRGDLRAVETLVHSGLD--VFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 170 ~~li~~ik~~~~~~~i~~--~t~~~~~~~e~l~~L~~aG~~--~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
.++++.+.+. ++++.+ ..+.. .++++++.|++ |+. .+.+++|+.+ ++.+.++ +++++++++++++.+++.
T Consensus 219 ~~Ll~~l~~~--~~~~r~~~~~p~~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~ 293 (440)
T PRK14862 219 TDLCEALGEL--GAWVRLHYVYPYP-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREI 293 (440)
T ss_pred HHHHHHHHhc--CCEEEEecCCCCc-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHH
Confidence 9999999887 443332 22333 47899999999 643 6677899874 4555554 478999999999999996
Q ss_pred CCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCCH----HHHHHHHHHHHh
Q 020304 245 KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVTP----EKFDFWKAYGES 313 (328)
Q Consensus 245 ~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~~----~~~~~l~~~~~~ 313 (328)
.+|+.+.+++|+|+ |||++++.++++++++++++.++++.|.. | |+.+ .....+++ +.+..+.++..+
T Consensus 294 ~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~-~~~~~v~~~~~~~r~~~l~~~~~~ 368 (440)
T PRK14862 294 CPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATAN-DLPDQVPEEVKEERWARFMEVQQQ 368 (440)
T ss_pred CCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchh-hCCCCCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999 99999999999999999999999987762 3 7764 12234444 344555554444
No 52
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.89 E-value=3.9e-23 Score=177.18 Aligned_cols=212 Identities=19% Similarity=0.298 Sum_probs=158.8
Q ss_pred CHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCC-CCCC----CCCCchHHHHHHHHHCCCcE
Q 020304 77 KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSR-NPAP----PDPMEPENTAKAIASWGVDY 150 (328)
Q Consensus 77 ~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~-~~~~----~~~~ei~~~~~~~~~~G~~~ 150 (328)
+|-+|.-.|. .+.++|++. ..++.++++.+ |+||..+|+||+++... .... +..+++.+.++++++.|-.+
T Consensus 60 PLldL~f~aa--~~HRk~Hdp-~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTR 136 (380)
T KOG2900|consen 60 PLLDLTFAAA--LQHRKWHDP-TKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTR 136 (380)
T ss_pred hHHHHHHHHH--HHHhhhCCc-cceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCce
Confidence 4444444444 466678874 78999999988 99999999999997532 2222 35678889999999999999
Q ss_pred EEEEeccCCCCCC-CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHH-hhhcCCC
Q 020304 151 IVLTSVDRDDIPD-GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPR 228 (328)
Q Consensus 151 i~l~gg~~~~l~~-~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~-~~~~~~~ 228 (328)
+++.....+.... ..+.++.+++++++.. ++.+. .+ .+.++++.+.+|++||+..++||+++..++| +.+. .
T Consensus 137 FCmGaAWRD~~GRk~~fk~IlE~ikevr~M--gmEvC-vT-LGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvIt--T 210 (380)
T KOG2900|consen 137 FCMGAAWRDMKGRKSAFKRILEMIKEVRDM--GMEVC-VT-LGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVIT--T 210 (380)
T ss_pred eecchhhhhhccchhHHHHHHHHHHHHHcC--Cceee-ee-eccccHHHHHHHHhccceecccCccchhhhhcccce--e
Confidence 9997766543332 1234555555555544 44443 33 4456999999999999999999999999987 6665 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC--CCEEeeecccC-C-CCCCcccCCCC
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQ-P-TPLHLTVKEYV 299 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~--~~~i~i~~~l~-P-Tp~~~~~~~~~ 299 (328)
.+|++++++++.+++ +|+.++++-|+|+||.++|..-.+-.|..+. ++.++++..+. | ||+.....+.+
T Consensus 211 RtYDdRL~Ti~nvr~--aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l 283 (380)
T KOG2900|consen 211 RTYDDRLQTIKNVRE--AGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKL 283 (380)
T ss_pred cchHHHHHHHHHHHH--hcceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccc
Confidence 899999999999999 9999999999999999999988888888775 56788853331 3 88764333333
No 53
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.89 E-value=2.1e-22 Score=194.47 Aligned_cols=212 Identities=18% Similarity=0.280 Sum_probs=158.5
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
.++++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++|.|+|.+...+... +...+.++++.+++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 5788899999999999999987665433 4567899999999999999999998765444210 124688899998875
Q ss_pred CCCcEEEEEe--CCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDIMVECLT--SDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~~i~~~t--~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++.+..++ ....+++++++.|+++| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+++.+.+++
T Consensus 219 -~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~i~i~~~~ 296 (429)
T TIGR00089 219 -DGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPDAAITTDI 296 (429)
T ss_pred -CCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCEEEeeE
Confidence 343322222 12224899999999995 8999999999865 554454 4789999999999999933448999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCc-c--cCCCCCHHHHHHHHHHHHhcCC
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHL-T--VKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~-~--~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
|+|+ |||.+++.++++++++++++.++++.|.. | |+++. . +...+..++...+.+++.+++.
T Consensus 297 IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~ 364 (429)
T TIGR00089 297 IVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISL 364 (429)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999987662 4 88762 1 2222334456666666665443
No 54
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=7.3e-22 Score=191.64 Aligned_cols=188 Identities=15% Similarity=0.234 Sum_probs=149.7
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
...++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++|.|+|.+...|... +.+.+.++++.+++.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 6788999999999999999987665433 4668899999999999999999998654433211 135789999999875
Q ss_pred CCCc-EEEEE-eCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDI-MVECL-TSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~-~i~~~-t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++ .+... ++...+++++++.|+++ |+..+.+++|+.++ +.+.++ ++++.++++++++.+++.++|+.+.+++
T Consensus 235 -~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pgi~i~~d~ 312 (459)
T PRK14338 235 -PGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPDVSLTTDI 312 (459)
T ss_pred -CCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 343 33322 23334589999999996 48999999999854 555554 4789999999999999955699999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
|+|+ |||.+++.++++++++++++.++++.|. .| |+++
T Consensus 313 IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~ 353 (459)
T PRK14338 313 IVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAA 353 (459)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhh
Confidence 9999 9999999999999999999999988776 24 8875
No 55
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=2.7e-22 Score=193.87 Aligned_cols=208 Identities=15% Similarity=0.239 Sum_probs=157.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
..+++.+++|||++|+||.++..++..+ ++++++.++++.+.+.|++++.|+|.+...|..+ ....+.++++.+.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 5788999999999999999987665443 4567888999999999999999998775544310 113577888887764
Q ss_pred CCCc-EEEEE--eCCCCCCHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 180 KPDI-MVECL--TSDFRGDLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 180 ~~~~-~i~~~--t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+++ .+.+. .++. +++++++.|+++| +.++.+++|+.++ +.+.++ ++++.++++++++.+++..+|+.+.++
T Consensus 227 -~~~~~ir~~~~~P~~-i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 227 -DGLERIRFMTSHPKD-LSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred -CCCcEEEEecCChhh-cCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 343 23322 2333 5899999999996 8999999999854 554454 478999999999999996668989999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCC----HHHHHHHHHHHHhc
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVT----PEKFDFWKAYGESI 314 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~----~~~~~~l~~~~~~~ 314 (328)
+|+|+ |||++++.++++++++++++.++++.|. .| |+++. ....++ .+++..+.+++++.
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~l~~~~~~~ 370 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAK-MEDQVPEDVKHERFNRLVELQNKI 370 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhh-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998887776 24 77762 122333 34455565555543
No 56
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=3.4e-22 Score=189.90 Aligned_cols=211 Identities=16% Similarity=0.208 Sum_probs=160.6
Q ss_pred CCCCCCCCCCCccCCCC--CC-CCCCCCchHHHHHHHHHC---CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC--
Q 020304 110 GDTCTRGCRFCAVKTSR--NP-APPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-- 181 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~--~~-~~~~~~ei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-- 181 (328)
-+.|+.+|.||.++... +. ...+.+.+.++++.+... +++.++|.||++..++ .+++.++++.+++.++
T Consensus 8 iPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~~~~~~~ 84 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIHRNLPLS 84 (377)
T ss_pred eCCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHHHhCCCC
Confidence 45699999999987532 11 223455666666655544 4667888888875454 5899999999988642
Q ss_pred -CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEc
Q 020304 182 -DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL 258 (328)
Q Consensus 182 -~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGl 258 (328)
...+.+.++...++++.++.|+++|++++++++|++++ +.+.++ ++++.+++.++++.+++ .|+. +++++|+|+
T Consensus 85 ~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~--~g~~~v~~dli~Gl 161 (377)
T PRK08599 85 GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK--AGFDNISIDLIYAL 161 (377)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEeeecCC
Confidence 23565555655569999999999999999999999864 665555 47999999999999999 9997 889999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCccc-CC-------CCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 259 -GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV-KE-------YVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 259 -gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~-~~-------~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|||.+++.++++++.+++++.+.++++. .| |++.... .+ ....+.++...+...+.||.++++++|+|
T Consensus 162 Pgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa~ 240 (377)
T PRK08599 162 PGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFAK 240 (377)
T ss_pred CCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeeeC
Confidence 9999999999999999999999987554 24 7764211 11 11223455667778889999999999886
No 57
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=4.9e-22 Score=192.10 Aligned_cols=208 Identities=15% Similarity=0.242 Sum_probs=153.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC-CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
..+++.+++|||++|+||.++..++. ..++++++.++++.+.+.|+++|.|+|.+...|..+ ....+.++++.+.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 68899999999999999999876544 345678889999999999999999988554333211 123577888887664
Q ss_pred C-CCcEEEEEeCCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 180 K-PDIMVECLTSDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 180 ~-~~~~i~~~t~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
. +.+.+....+ ..+++++++.|+++ |+.++.+++|+.++ +.+.++ ++++.++++++++.+++..+++.+++++|
T Consensus 218 ~i~~ir~~~~~p-~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~i~i~~d~I 295 (440)
T PRK14334 218 GIPRVKFTTSHP-MNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPDVVLSTDII 295 (440)
T ss_pred CCcEEEEccCCc-ccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Confidence 2 1233332223 33589999999995 59999999999854 544444 47899999999999999444566889999
Q ss_pred EEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCCH----HHHHHHHHHHHh
Q 020304 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVTP----EKFDFWKAYGES 313 (328)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~~----~~~~~l~~~~~~ 313 (328)
+|+ |||.+++.++++++++++++.++++.|.. | |+.+.. ...+++ +.++.+.++..+
T Consensus 296 vG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~-~~~v~~~~~~~r~~~l~~~~~~ 359 (440)
T PRK14334 296 VGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKH-FQDLPREVKTERLQRLIEKQKE 359 (440)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhc-cCCCCHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999987762 4 776521 233444 344455554443
No 58
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.89 E-value=5.6e-22 Score=190.60 Aligned_cols=211 Identities=14% Similarity=0.222 Sum_probs=155.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC-CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~-~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~ 181 (328)
..+++.+++|||++|+||..+..++..+ ++++++.++++.+.+.|+++++|+|.+...|.......+.++++.+.+...
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i~~ 212 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEIPG 212 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhCCC
Confidence 6788999999999999999987766544 456888999999999999999999877554532111357777777766422
Q ss_pred CcEEEE--EeCCC--CCCHHHHHHHHHcC-CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 182 DIMVEC--LTSDF--RGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 182 ~~~i~~--~t~~~--~~~~e~l~~L~~aG-~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
...+.+ ..+.. .+++++++.++..| +..+.+++|+.++ +.+.++ ++++.+++.++++.+++..+|+.+.+++|
T Consensus 213 ~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~i~i~~~~I 291 (420)
T TIGR01578 213 EFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPDLTLSTDII 291 (420)
T ss_pred CcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEeeEE
Confidence 223332 22321 23688888888666 6788899999854 554444 37899999999999999555999999999
Q ss_pred EEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCccc--CCCCCHHHHHHHHHHHHhc
Q 020304 256 LGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTV--KEYVTPEKFDFWKAYGESI 314 (328)
Q Consensus 256 vGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~--~~~~~~~~~~~l~~~~~~~ 314 (328)
+|+ |||.+++.++++++++++++.++++.|.. | |+++... .+.+..++...+++++.+.
T Consensus 292 vG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~ 355 (420)
T TIGR01578 292 VGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQV 355 (420)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999987762 4 8876321 1122334566666665543
No 59
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.89 E-value=6.6e-22 Score=185.15 Aligned_cols=204 Identities=15% Similarity=0.197 Sum_probs=144.0
Q ss_pred eeeEEEEEeCCCCCCCCCCCccCCCCCC-CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---------HHHHH
Q 020304 101 IATATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------SGHFA 170 (328)
Q Consensus 101 ~~~~~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------~~~l~ 170 (328)
+....++++||+|+.+|.||+++..++. ..++++++.+.++++.+.|++++.|+||+++++.-.. ...+.
T Consensus 10 ~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~ 89 (336)
T PRK06245 10 YSRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSIL 89 (336)
T ss_pred eecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHH
Confidence 3455677899999999999999876543 3467889999999999999999999999876553100 12334
Q ss_pred HHHHHHHHhCC--CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhc--CCCCCHHHHHHHHHHHHHhC
Q 020304 171 RTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSK 245 (328)
Q Consensus 171 ~li~~ik~~~~--~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~--~~~~~~~~~l~~i~~~~~~~ 245 (328)
++++.+.+... ++.. ..+...++++.++.|+++|+. +.+++|+.++ +.+.++ .++.++++++++++.+++
T Consensus 90 ~~i~~i~~~~~~~g~~~--~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~-- 164 (336)
T PRK06245 90 EYLYDLCELALEEGLLP--HTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGK-- 164 (336)
T ss_pred HHHHHHHHHHhhcCCCc--cccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHH--
Confidence 44444433211 2222 233445699999999999864 4566787654 432221 135689999999999999
Q ss_pred CCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-----CCEEeeecccCC---CCCCcccCCCCCHHHHHHHHHHHH
Q 020304 246 KGLITKSSIMLGLGESDDDLKEAMADLRSID-----VDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 246 ~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-----~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~~~l~~~~~ 312 (328)
.|+.+++++|+|+|||.+++.+++..+++++ ++.+.++.|. | ||+. .....+++++.++.++++
T Consensus 165 ~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~-P~~~T~~~--~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 165 LKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFS-PKPGIPME--NHPEPSLEEMLRVVALAR 236 (336)
T ss_pred cCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCc-CCCCCCcc--cCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 4666676555 5 5543 233456666555444444
No 60
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=9.9e-22 Score=186.59 Aligned_cols=216 Identities=12% Similarity=0.182 Sum_probs=159.2
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCC---CCCchHHHHHHHH-HCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPP---DPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~---~~~ei~~~~~~~~-~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
++...-+.|+.+|.||.++...+.... +.+.+.++++.+. ..+++.|+|.||++..++ .+.+..+++.+++..
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLN 81 (374)
T ss_pred EEEEEeCCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCC
Confidence 444557889999999999765332221 2334444444332 234678888888875454 467777778776531
Q ss_pred --CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEE
Q 020304 181 --PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIML 256 (328)
Q Consensus 181 --~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~iv 256 (328)
+++.+.+.++...++++.++.|+++|++++++|+|++++ ..+.+. +.++.++.+++++.+++ .|+. +++++|+
T Consensus 82 ~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~~v~~dli~ 158 (374)
T PRK05799 82 KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK--LGFNNINVDLMF 158 (374)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCcEEEEeec
Confidence 345666656655679999999999999999999999965 555444 47899999999999999 9997 8999999
Q ss_pred Ec-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccC----CCCCH----HHHHHHHHHHHhcCCceeeecccc
Q 020304 257 GL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTP----EKFDFWKAYGESIGFRYVASGPLV 325 (328)
Q Consensus 257 Gl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~----~~~~~----~~~~~l~~~~~~~G~~~~~~g~~~ 325 (328)
|+ |||.+++.++++++.+++++.+.++.+. .| |+++.... ...+. ..++...+...+.||.+|++++++
T Consensus 159 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa 238 (374)
T PRK05799 159 GLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFA 238 (374)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeE
Confidence 99 9999999999999999999999997654 24 77642111 11122 234556677888999999999998
Q ss_pred c
Q 020304 326 S 326 (328)
Q Consensus 326 ~ 326 (328)
|
T Consensus 239 ~ 239 (374)
T PRK05799 239 K 239 (374)
T ss_pred C
Confidence 7
No 61
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.1e-21 Score=187.29 Aligned_cols=217 Identities=10% Similarity=0.133 Sum_probs=161.3
Q ss_pred EEEEEeCCCCCCCCCCCccCCCC-CC-C-CC-------CCCchHHHHHHHHH--CCCcEEEEEeccCCCCCCCcHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSR-NP-A-PP-------DPMEPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~-~~-~-~~-------~~~ei~~~~~~~~~--~G~~~i~l~gg~~~~l~~~~~~~l~~ 171 (328)
.++...-+.|+.+|.||.++... +. . .. +.+.+.++++.... .+++.|+|.||++..++ .+++.+
T Consensus 11 ~~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~~ 87 (400)
T PRK07379 11 TSAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLER 87 (400)
T ss_pred cEEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHH
Confidence 35556688999999999997531 11 1 11 12233344443222 34678899999976565 689999
Q ss_pred HHHHHHHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 020304 172 TVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (328)
Q Consensus 172 li~~ik~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~G 247 (328)
+++.|++.+ ++..+.+..+...++++.++.|+++|++++++|+|++++ +.+.+. +.++.++..++++.+++ .|
T Consensus 88 ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~--~G 164 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ--AG 164 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cC
Confidence 999998864 223454444444469999999999999999999999965 555554 48999999999999999 99
Q ss_pred Ce-EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccC----CCCCH----HHHHHHHHHHHhcC
Q 020304 248 LI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK----EYVTP----EKFDFWKAYGESIG 315 (328)
Q Consensus 248 i~-v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~----~~~~~----~~~~~l~~~~~~~G 315 (328)
+. ++.++|+|+ |||.+++.++++++.+++++.+.++++. .| |+++.... ...+. +.++...+...+.|
T Consensus 165 ~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G 244 (400)
T PRK07379 165 IENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAG 244 (400)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 98 999999999 9999999999999999999999998655 24 77652211 11222 23455677788999
Q ss_pred Cceeeeccccc
Q 020304 316 FRYVASGPLVS 326 (328)
Q Consensus 316 ~~~~~~g~~~~ 326 (328)
|.+|++.+|+|
T Consensus 245 y~~yeisnfa~ 255 (400)
T PRK07379 245 YEHYEISNYAK 255 (400)
T ss_pred CceeeeeheEC
Confidence 99999999986
No 62
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.88 E-value=1.7e-21 Score=183.90 Aligned_cols=214 Identities=12% Similarity=0.174 Sum_probs=158.8
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCC---CCCCchHHHHHH-HHHCC---CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKA-IASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~~~~-~~~~G---~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
...-+.|+.+|.||.+........ .+.+.+.++++. +...| ++.|+|.||+|..++ .+++.++++.|++.
T Consensus 4 YiHiPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~ 80 (360)
T TIGR00539 4 YIHIPFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQH 80 (360)
T ss_pred EEEeCCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHh
Confidence 344678999999999976432111 122223333332 23334 678999999976565 58888888888765
Q ss_pred C---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeE
Q 020304 180 K---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSI 254 (328)
Q Consensus 180 ~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ 254 (328)
+ ++..+.+.++...++++.++.|+++|++++++|+|++++ ..+.+. +.+++++.+++++.+++ .|+. +++++
T Consensus 81 ~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~--~G~~~v~~dl 157 (360)
T TIGR00539 81 ASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK--SGIENISLDL 157 (360)
T ss_pred CCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEEEec
Confidence 4 345666666666679999999999999999999999864 655554 47999999999999999 9995 89999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCCHH----HHHHHHHHHHhcCCceeeeccccc
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTPE----KFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~~~----~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|+|+ |||.+++.++++++.+++++.+.++.+. .| |+++.........+ .+....+...+.||.+++..+++|
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 236 (360)
T TIGR00539 158 MYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAK 236 (360)
T ss_pred cCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcC
Confidence 9999 9999999999999999999999997654 23 77653222222222 233445667789999999999886
No 63
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=2.1e-21 Score=188.66 Aligned_cols=210 Identities=15% Similarity=0.247 Sum_probs=153.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCC--CCCC---CCCCchHHHHHHHHH------CCCcEEEEEeccCCCCCCCcHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAP---PDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFAR 171 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~--~~~~---~~~~ei~~~~~~~~~------~G~~~i~l~gg~~~~l~~~~~~~l~~ 171 (328)
..++...-+.||.+|.||+++... +... .+.+.+.++++.+.+ .++..++|.||+|..++ .+.+.+
T Consensus 163 ~~sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 163 EVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred ceEEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 345566678999999999998642 1111 122333444443321 24568899999986665 589999
Q ss_pred HHHHHHHhCCC---c-EE--EEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 172 TVKAMKKQKPD---I-MV--ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 172 li~~ik~~~~~---~-~i--~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
+++.+++.+|+ + .+ ++..|+. ++++.++.|+++|++++++|+||+++ ..+.+. +.++.++.+++++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~-it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDT-ITEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 99999877542 2 22 2223433 59999999999999999999999865 555554 47999999999999999
Q ss_pred CCCC-eEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccC--CCCCH----HHHHHHHHHHHhc
Q 020304 245 KKGL-ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK--EYVTP----EKFDFWKAYGESI 314 (328)
Q Consensus 245 ~~Gi-~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~--~~~~~----~~~~~l~~~~~~~ 314 (328)
.|+ .+++++|+|+ |||.+++.++++++.+++++.++++.+. .| |+++.... ...+. +.++...+.+.++
T Consensus 317 -~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~ 395 (488)
T PRK08207 317 -MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKEL 395 (488)
T ss_pred -CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHc
Confidence 999 6999999999 9999999999999999999999997554 23 77652111 11222 2345566777889
Q ss_pred CCcee
Q 020304 315 GFRYV 319 (328)
Q Consensus 315 G~~~~ 319 (328)
|++.|
T Consensus 396 Gy~~Y 400 (488)
T PRK08207 396 GYVPY 400 (488)
T ss_pred CCHhh
Confidence 99998
No 64
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=7.4e-22 Score=191.24 Aligned_cols=209 Identities=15% Similarity=0.218 Sum_probs=156.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC---C------cHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD---G------GSGHFART 172 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~---~------~~~~l~~l 172 (328)
..+++.+++|||++|+||.++..++.. .+++++++++++.+.+.|++++.|+|.+...|.. + ....|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 467889999999999999998766543 3456788999999988999999998865443321 0 01368888
Q ss_pred HHHHHHhCCCcE-EEEEe-CCCCCCHHHHHHHHHc--CCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 020304 173 VKAMKKQKPDIM-VECLT-SDFRGDLRAVETLVHS--GLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (328)
Q Consensus 173 i~~ik~~~~~~~-i~~~t-~~~~~~~e~l~~L~~a--G~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~G 247 (328)
++.+.+. +++. +...+ ....+++++++.|+++ |+.++.+++|+.++ +.+.++ ++++.++++++++.+++..+|
T Consensus 228 l~~i~~~-~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDV-EGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhc-CCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 8888775 4443 32211 1222489999999997 48889999999854 554444 478999999999999995568
Q ss_pred CeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCc---ccCCCCCHHHHHHHHHHHHh
Q 020304 248 LITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHL---TVKEYVTPEKFDFWKAYGES 313 (328)
Q Consensus 248 i~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~---~~~~~~~~~~~~~l~~~~~~ 313 (328)
+.+.+++|+|+ |||++++.++++++++++++.++++.|.. | |+++. ++...+..++...|.+++.+
T Consensus 306 i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~ 377 (448)
T PRK14333 306 ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQ 377 (448)
T ss_pred cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999987762 4 88752 12223334555666666554
No 65
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=1.4e-21 Score=185.46 Aligned_cols=216 Identities=14% Similarity=0.201 Sum_probs=162.2
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCC-------CCCCCchHHHHHHHHH-C-----CCcEEEEEeccCCCCCCCcHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPA-------PPDPMEPENTAKAIAS-W-----GVDYIVLTSVDRDDIPDGGSGHFAR 171 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~-------~~~~~ei~~~~~~~~~-~-----G~~~i~l~gg~~~~l~~~~~~~l~~ 171 (328)
++...-+.|+.+|.||.++...... ..+.+.+.++++...+ . .++.++|.||++..++ .+.+.+
T Consensus 4 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ 80 (375)
T PRK05628 4 GVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLAR 80 (375)
T ss_pred EEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHH
Confidence 3444567899999999997532111 1133455555554433 2 2668888888876665 588999
Q ss_pred HHHHHHHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 020304 172 TVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (328)
Q Consensus 172 li~~ik~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~G 247 (328)
+++.+++.+ ++..+.+.++...++++.++.|+++|++++++++|++++ +.+.++ +.++.++.+++++.+++ .|
T Consensus 81 ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~--~g 157 (375)
T PRK05628 81 VLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA--AG 157 (375)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cC
Confidence 999988754 345565555555569999999999999999999999865 555554 47999999999999999 99
Q ss_pred Ce-EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccC----CCCC----HHHHHHHHHHHHhcC
Q 020304 248 LI-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVK----EYVT----PEKFDFWKAYGESIG 315 (328)
Q Consensus 248 i~-v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~----~~~~----~~~~~~l~~~~~~~G 315 (328)
+. +++++|+|+ |||.+++.++++++.+++++.+.++++.. | |+++.... ...+ .+.+..+.+...+.|
T Consensus 158 ~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 237 (375)
T PRK05628 158 FEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAG 237 (375)
T ss_pred CCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 98 999999999 99999999999999999999999876552 4 77652111 1122 234556667778899
Q ss_pred Cceeeeccccc
Q 020304 316 FRYVASGPLVS 326 (328)
Q Consensus 316 ~~~~~~g~~~~ 326 (328)
|.+++..+++|
T Consensus 238 ~~~ye~s~fa~ 248 (375)
T PRK05628 238 FDWYEVSNWAR 248 (375)
T ss_pred CCeeeeccccC
Confidence 99999999886
No 66
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=2.2e-21 Score=187.80 Aligned_cols=217 Identities=16% Similarity=0.232 Sum_probs=163.2
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHH------CCCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~------~G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
.++...-+.|+.+|.||.+...... ...+.+.+.++++...+ ..++.|+|.||++..++ .+.+.++++
T Consensus 62 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll~ 138 (449)
T PRK09058 62 RLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLIT 138 (449)
T ss_pred eEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHHH
Confidence 4455557889999999998653211 11244555666665443 23668899999987665 589999999
Q ss_pred HHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-Ce
Q 020304 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG-LI 249 (328)
Q Consensus 175 ~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~G-i~ 249 (328)
.+++.++ +..+.+.++...++++.++.|+++|++++++|+|++++ ..+.++ +.++.++++++++.+++ .| ..
T Consensus 139 ~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~--~g~~~ 215 (449)
T PRK09058 139 ALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVA--RDRAA 215 (449)
T ss_pred HHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh--CCCCc
Confidence 9988653 34555555545569999999999999999999999965 555454 47899999999999999 99 56
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCccc-CCC---C-CH----HHHHHHHHHHHhcCCc
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV-KEY---V-TP----EKFDFWKAYGESIGFR 317 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~-~~~---~-~~----~~~~~l~~~~~~~G~~ 317 (328)
+++++|+|+ |||.+++.++++++.+++++.+.++++. .| |++.... .+. . +. +.++...+...+.||+
T Consensus 216 v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 216 VVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 999999999 9999999999999999999999998654 24 7664211 111 1 22 2345567778889999
Q ss_pred eeeeccccc
Q 020304 318 YVASGPLVS 326 (328)
Q Consensus 318 ~~~~g~~~~ 326 (328)
+|++.+++|
T Consensus 296 ~yeis~far 304 (449)
T PRK09058 296 QLSNSHWAR 304 (449)
T ss_pred EEeeeeeec
Confidence 999998886
No 67
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.87 E-value=4.3e-21 Score=188.22 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=144.3
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCC-CCCCCCchHHHHHHHH-HCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-C
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-P 181 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei~~~~~~~~-~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~ 181 (328)
..+++|+|||++|+||+.+...+. ..++++.+.++++.+. +.|++.+.|.+.+.. .. .+++.++++++.++. .
T Consensus 195 ~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~-~~---~~~~~~l~~~l~~~~~l 270 (497)
T TIGR02026 195 AVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPT-IN---RKKFQEFCEEIIARNPI 270 (497)
T ss_pred eeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccc-cC---HHHHHHHHHHHHhcCCC
Confidence 356789999999999998764332 3356778888888775 579999999866542 22 578999999998874 3
Q ss_pred CcEEEEEeCCCC--CCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 182 DIMVECLTSDFR--GDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 182 ~~~i~~~t~~~~--~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
++.+.+.+.... .++++++.|+++|+.++.+|+|+.++ ..+.++ ++++.++..++++.+++ .|+.+.+++|+|+
T Consensus 271 ~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~--~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 271 SVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ--HNILSEAQFITGF 347 (497)
T ss_pred CeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCcEEEEEEEEC
Confidence 566666553222 37899999999999999999999865 555555 47899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCC
Q 020304 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLH 292 (328)
Q Consensus 259 -gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~ 292 (328)
|||.+++.++++++.+++++.+.++. +.| |+++
T Consensus 348 P~et~e~~~~t~~~~~~l~~~~~~~~~-~tP~PGT~l~ 384 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWDPDQANWLM-YTPWPFTSLF 384 (497)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEE-ecCCCCcHHH
Confidence 99999999999999999999988853 334 6653
No 68
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.87 E-value=7.7e-21 Score=183.25 Aligned_cols=215 Identities=11% Similarity=0.128 Sum_probs=158.8
Q ss_pred EEEeCCCCCCCCCCCccCCCCCCC-C---CCCCchHHHHHHHHHC----CCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIASW----GVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~~~-~---~~~~ei~~~~~~~~~~----G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
+...-+.|+.+|.||.+....+.. . .+.+.+.++++.+.+. .+..+.|.||+|..++ .+++.++++.|+
T Consensus 42 lYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~~i~ 118 (430)
T PRK08208 42 LYIHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFDSVE 118 (430)
T ss_pred EEEEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHHHHH
Confidence 333458899999999987643221 1 1233444555544322 3558888888876554 588899999988
Q ss_pred HhCC----CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 020304 178 KQKP----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (328)
Q Consensus 178 ~~~~----~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (328)
+.++ +..+.+.++...++++.++.|+++|++++++|+|+++ +..+.+. ++++.++.+++++.+++ .|+. ++
T Consensus 119 ~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~--~g~~~i~ 195 (430)
T PRK08208 119 RVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA--AGFPILN 195 (430)
T ss_pred HhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCeEE
Confidence 7642 2345555555556999999999999999999999994 4444443 37899999999999999 9997 68
Q ss_pred EeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCC--CCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 252 SSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKE--YVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 252 ~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~--~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+++|+|+ |||.+++.++++++.+++++.+.++++. .| |+++....+ ....+.++...+...+.||++++.++++|
T Consensus 196 ~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~far 275 (430)
T PRK08208 196 IDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMFRR 275 (430)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecceec
Confidence 9999999 9999999999999999999999998654 24 777532221 11223455667778889999999999987
No 69
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=4.8e-21 Score=181.22 Aligned_cols=216 Identities=12% Similarity=0.154 Sum_probs=158.0
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCC---CCCCchHHH-HHHHHH----CCCcEEEEEeccCCCCCCCcHHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENT-AKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~-~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ 175 (328)
.++...-+.|..+|.||.+........ .+.+.+.++ ++.... ..++.|+|.||+|..++ .+.+.++++.
T Consensus 7 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHIPFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred eEEEEEeCCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 355556889999999999876421111 112222222 222221 23668889999986665 5889999999
Q ss_pred HHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEe
Q 020304 176 MKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSS 253 (328)
Q Consensus 176 ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (328)
|++. ++..+.+.++...++++.++.|+++|++++++|+|++++ ..+.+. +.++.++.+++++.+++ .|+. ++.+
T Consensus 84 i~~~-~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~--~g~~~v~~D 159 (370)
T PRK06294 84 LEAP-HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE--HGFSNLSID 159 (370)
T ss_pred HHhC-CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--cCCCeEEEE
Confidence 8764 344454444545569999999999999999999999965 554444 47999999999999999 9996 9999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCccc---CCCC-CH----HHHHHHHHHHHhcCCceeeec
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV---KEYV-TP----EKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~---~~~~-~~----~~~~~l~~~~~~~G~~~~~~g 322 (328)
+|+|+ |||.+++.++++.+.+++++.+.++++. .| |+++... ...+ .. +.++...+...+.||.+|+++
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis 239 (370)
T PRK06294 160 LIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELA 239 (370)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeee
Confidence 99999 9999999999999999999999998665 24 7764211 1111 22 334456677788999999999
Q ss_pred cccc
Q 020304 323 PLVS 326 (328)
Q Consensus 323 ~~~~ 326 (328)
+|+|
T Consensus 240 ~fa~ 243 (370)
T PRK06294 240 SYAK 243 (370)
T ss_pred eeeC
Confidence 9986
No 70
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=1.1e-20 Score=180.32 Aligned_cols=216 Identities=11% Similarity=0.100 Sum_probs=161.9
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCC------CCCCCchHHHHHHHHH----CCCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPA------PPDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~------~~~~~ei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
++...-+.|..+|.||.++...... ..+.+.+.++++.... ..++.|+|.||+|..++ .+.+.++++
T Consensus 21 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~ 97 (394)
T PRK08898 21 SLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLS 97 (394)
T ss_pred EEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHH
Confidence 4555678899999999997642211 1133445555553322 23668899999987776 589999999
Q ss_pred HHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 175 ~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
.|++.+| +..+.+..+...++.+.++.|+++|++++++|+|++++ ..+.+. +.++.++..++++.+++ .+..+
T Consensus 98 ~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~--~~~~v 174 (394)
T PRK08898 98 DVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAK--HFDNF 174 (394)
T ss_pred HHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--hCCce
Confidence 9998763 23555555555568999999999999999999999965 555443 47899999999999999 77789
Q ss_pred EEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccCCCCCH----HHHHHHHHHHHhcCCceeeecc
Q 020304 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVKEYVTP----EKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 251 ~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
++++|+|+ |||.+++.++++.+.+++++.+.++++. .| |++.....+.... +.++...+...+.||.+|+..+
T Consensus 175 ~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 254 (394)
T PRK08898 175 NLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSA 254 (394)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhcccc
Confidence 99999999 9999999999999999999999998665 24 7765211111122 2334456667788999999998
Q ss_pred ccc
Q 020304 324 LVS 326 (328)
Q Consensus 324 ~~~ 326 (328)
++|
T Consensus 255 fa~ 257 (394)
T PRK08898 255 YAK 257 (394)
T ss_pred ccC
Confidence 886
No 71
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=1.7e-20 Score=182.03 Aligned_cols=215 Identities=13% Similarity=0.236 Sum_probs=160.7
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCC-C---CCCCchHHHHHHHHH-----CCCcEEEEEeccCCCCCCCcHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~-~---~~~~ei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ 175 (328)
++...-+.|+.+|.||.+....+.. . .+.+.+.++++.+.+ .+++.+.|.||++..++ .+++.++++.
T Consensus 51 ~LYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~~ 127 (453)
T PRK09249 51 SLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMAL 127 (453)
T ss_pred EEEEEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHHH
Confidence 3444468899999999987643211 1 123344444443332 34778899999976554 5899999999
Q ss_pred HHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eE
Q 020304 176 MKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-IT 250 (328)
Q Consensus 176 ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi-~v 250 (328)
+++.++ +..+.+.++...++++.++.|+++|++++++|+|++++ ..+.++ +.++.++.+++++.+++ .|+ .+
T Consensus 128 l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~--~G~~~v 204 (453)
T PRK09249 128 LREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE--LGFTSI 204 (453)
T ss_pred HHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCcE
Confidence 988742 44566666666679999999999999999999999865 555555 47899999999999999 999 69
Q ss_pred EEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCc----cc--CCCCCHHH----HHHHHHHHHhcCCcee
Q 020304 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL----TV--KEYVTPEK----FDFWKAYGESIGFRYV 319 (328)
Q Consensus 251 ~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~----~~--~~~~~~~~----~~~l~~~~~~~G~~~~ 319 (328)
++++|+|+ |||.+++.++++++.+++++.+.++.+. ++|... .. ....+.++ +....+...+.||.++
T Consensus 205 ~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 283 (453)
T PRK09249 205 NIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYA-HVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYI 283 (453)
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCc-cchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999 9999999999999999999999997654 333320 00 11223333 4455667788999999
Q ss_pred eeccccc
Q 020304 320 ASGPLVS 326 (328)
Q Consensus 320 ~~g~~~~ 326 (328)
+.++++|
T Consensus 284 e~s~far 290 (453)
T PRK09249 284 GMDHFAL 290 (453)
T ss_pred eccceeC
Confidence 9998886
No 72
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.87 E-value=5.5e-21 Score=186.72 Aligned_cols=173 Identities=12% Similarity=0.220 Sum_probs=139.7
Q ss_pred EEEEeCCCCCCCCCCCccCCCC-C--CCCCCCCchHHHHHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSR-N--PAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~-~--~~~~~~~ei~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
..+.+|+|||++|+||+++... + ...++++.+.++++.+.+. |++.+.|.+.+. .. +.+++.++++.+++.
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f--~~--~~~~~~~l~~~l~~~ 273 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF--TD--DKPRAEEIARKLGPL 273 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC--CC--CHHHHHHHHHHHhhc
Confidence 4567899999999999876422 1 2335677888888887764 788898865442 11 258899999999876
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
++.+.+.+... ++++.++.|+++|++++.+|+|+.++ +.+.++ ++++.++..++++.+++ .|+.+.+++|+|+
T Consensus 274 --~i~~~~~~~~~-~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~--~Gi~v~~~~IiGl 347 (472)
T TIGR03471 274 --GVTWSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK--LGIKVHGTFILGL 347 (472)
T ss_pred --CceEEEEecCC-CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH--CCCeEEEEEEEeC
Confidence 57776665443 58999999999999999999999865 555555 47899999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 259 -gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
|||.+++.++++++.+++++.+.++ .+.|
T Consensus 348 Pget~e~~~~ti~~~~~l~~~~~~~~-~l~P 377 (472)
T TIGR03471 348 PGETRETIRKTIDFAKELNPHTIQVS-LAAP 377 (472)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeee-eccc
Confidence 9999999999999999999988885 4434
No 73
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.87 E-value=1.4e-20 Score=182.76 Aligned_cols=216 Identities=13% Similarity=0.254 Sum_probs=161.4
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCC-C---CCCCchHHHHHHHHH-----CCCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~-~---~~~~ei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
.++...-+.|+.+|.||.+....+.. . .+.+.+.++++.+.. .+++.|+|.||++..+. .+++.++++
T Consensus 50 ~~lYiHiPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 50 LSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred eEEEEEeCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 34555678899999999997643221 1 123444455554432 36788999999976555 589999999
Q ss_pred HHHHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 020304 175 AMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (328)
Q Consensus 175 ~ik~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (328)
.+++.+ .+..+.+.++...++++.++.|+++|++++.+|+|++++ ..+.++ +.++.++.+++++.+++ .|+.
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~--~G~~~ 203 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE--AGFTS 203 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 999864 234555555655679999999999999999999999965 666665 46899999999999999 9996
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC----ccc--CCCCCHHH----HHHHHHHHHhcCCce
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH----LTV--KEYVTPEK----FDFWKAYGESIGFRY 318 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~----~~~--~~~~~~~~----~~~l~~~~~~~G~~~ 318 (328)
+++++|+|+ |||.+++.++++++.+++++.+.++.+. ++|.. ... ....++++ +..+.+...+.||.+
T Consensus 204 v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~-~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~ 282 (455)
T TIGR00538 204 INIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYA-HVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQF 282 (455)
T ss_pred EEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCc-cccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 899999999 9999999999999999999999997664 22221 001 11123332 345566677899999
Q ss_pred eeeccccc
Q 020304 319 VASGPLVS 326 (328)
Q Consensus 319 ~~~g~~~~ 326 (328)
++.++++|
T Consensus 283 ~~~~~fa~ 290 (455)
T TIGR00538 283 IGMDHFAK 290 (455)
T ss_pred EeccceeC
Confidence 99999986
No 74
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=9.8e-21 Score=179.93 Aligned_cols=217 Identities=11% Similarity=0.107 Sum_probs=162.0
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCC---CCCCchHHHHHHHHH----CCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
.++...-+.|..+|.||.|........ .+.+.+.++++.... ..++.|+|.||+|..++ .+.+.++++.+
T Consensus 12 ~~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~i 88 (390)
T PRK06582 12 LSIYIHWPFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINKI 88 (390)
T ss_pred eEEEEEeCCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHHH
Confidence 455666899999999999976422111 122233344443322 24678999999986665 58888899999
Q ss_pred HHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q 020304 177 KKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS 252 (328)
Q Consensus 177 k~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~ 252 (328)
++.+ +...+.+.++...++++.++.|+++|++++++|+|++++ ..+.+. +.|+.++.+++++.+++ .+..++.
T Consensus 89 ~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~--~~~~v~~ 165 (390)
T PRK06582 89 SNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANT--IFPRVSF 165 (390)
T ss_pred HHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCCcEEE
Confidence 8753 223455555555579999999999999999999999965 444443 48999999999999999 7778999
Q ss_pred eEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcccC-C---CCC----HHHHHHHHHHHHhcCCceeee
Q 020304 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTVK-E---YVT----PEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~~-~---~~~----~~~~~~l~~~~~~~G~~~~~~ 321 (328)
++|+|+ |||.+++.++++.+.+++++.+.++++. .| |+++.... + ..+ .+.++...+...+.||.+|+.
T Consensus 166 DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yei 245 (390)
T PRK06582 166 DLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEI 245 (390)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeec
Confidence 999999 9999999999999999999999998665 35 87752211 1 112 233456677788899999999
Q ss_pred ccccc
Q 020304 322 GPLVS 326 (328)
Q Consensus 322 g~~~~ 326 (328)
.+++|
T Consensus 246 s~fa~ 250 (390)
T PRK06582 246 SNYAK 250 (390)
T ss_pred eeeeC
Confidence 99886
No 75
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=8.3e-21 Score=180.30 Aligned_cols=216 Identities=10% Similarity=0.073 Sum_probs=162.4
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCC---CCCCchHHHHHHHHH----CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIAS----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~~~~~~~----~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
++...-+.|..+|.||.+.+...... .+.+.+.++++...+ ..++.|+|.||+|..++ .+.+.++++.|+
T Consensus 6 ~lYiHIPFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~ 82 (380)
T PRK09057 6 GLYVHWPFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIA 82 (380)
T ss_pred EEEEEeCCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHH
Confidence 45556789999999999976432111 133444555554332 24779999999987665 589999999999
Q ss_pred HhCCC---cEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 178 KQKPD---IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 178 ~~~~~---~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+.++- ..+.+.++...++.+.++.|+++|++++++|+|++++ ..+.+. +.++.++..++++.+++ .+..++.+
T Consensus 83 ~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~--~~~~v~~d 159 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLARE--IFPRVSFD 159 (380)
T ss_pred HhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH--hCccEEEE
Confidence 86532 2444444444569999999999999999999999965 544444 48999999999999999 88889999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccC----CCCCH----HHHHHHHHHHHhcCCceeeec
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVK----EYVTP----EKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~----~~~~~----~~~~~l~~~~~~~G~~~~~~g 322 (328)
+|+|+ |+|.+++.++++.+.+++++.+.++++.. | |+++.... ...+. +.++...++..+.||.+|+.+
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s 239 (380)
T PRK09057 160 LIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEIS 239 (380)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhH
Confidence 99999 99999999999999999999999986652 4 77652111 11222 345667777888999999988
Q ss_pred cccc
Q 020304 323 PLVS 326 (328)
Q Consensus 323 ~~~~ 326 (328)
+++|
T Consensus 240 ~~a~ 243 (380)
T PRK09057 240 NHAR 243 (380)
T ss_pred HHcC
Confidence 8775
No 76
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=2.1e-20 Score=181.36 Aligned_cols=216 Identities=11% Similarity=0.154 Sum_probs=160.4
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCC-C---CCCCchHHHHHHHHH-----CCCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPA-P---PDPMEPENTAKAIAS-----WGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~-~---~~~~ei~~~~~~~~~-----~G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
.++...-+.|+.+|.||.+....... . .+.+.+.++++...+ .++..++|.||+|..++ .+++.++++
T Consensus 51 ~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll~ 127 (453)
T PRK13347 51 VSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLMA 127 (453)
T ss_pred eEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHHH
Confidence 34555567799999999987543211 1 122334444443332 25678899999986665 589999999
Q ss_pred HHHHhC---CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 020304 175 AMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (328)
Q Consensus 175 ~ik~~~---~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (328)
.+++.+ ++..+.+.++...++++.++.|+++|++++++|+|++++ +.+.++ +.++.++..++++.+++ .|+.
T Consensus 128 ~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~--~G~~~ 204 (453)
T PRK13347 128 ALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA--AGFES 204 (453)
T ss_pred HHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh--cCCCc
Confidence 999864 234555555655679999999999999999999999965 665555 46899999999999999 9997
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCc--c----cCCCCCH----HHHHHHHHHHHhcCCce
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL--T----VKEYVTP----EKFDFWKAYGESIGFRY 318 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~--~----~~~~~~~----~~~~~l~~~~~~~G~~~ 318 (328)
+++++|+|+ |||.+++.++++++.+++++.+.++.+. .+|... + .....++ +.+....+...+.||.+
T Consensus 205 v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~-~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 205 INFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA-HVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred EEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc-cccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 899999999 9999999999999999999999997664 333311 0 0111122 23445566777899999
Q ss_pred eeeccccc
Q 020304 319 VASGPLVS 326 (328)
Q Consensus 319 ~~~g~~~~ 326 (328)
++..+++|
T Consensus 284 ~~~~~far 291 (453)
T PRK13347 284 IGLDHFAL 291 (453)
T ss_pred EeccceeC
Confidence 99999886
No 77
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.86 E-value=1.6e-20 Score=163.15 Aligned_cols=183 Identities=17% Similarity=0.324 Sum_probs=145.0
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCC-CCCCCCchHHHHHHHHHCC-----CcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei~~~~~~~~~~G-----~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
..++.+|++|+++|.||......+. ...+++++.+.++++.+.| ++.+.++||++...+ .+.+.++++.++
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHH
Confidence 3567889999999999998765422 2234567777777775544 467788888875443 236888999888
Q ss_pred HhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCC-CeEEE
Q 020304 178 KQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKG-LITKS 252 (328)
Q Consensus 178 ~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~G-i~v~~ 252 (328)
+..+ ...+...+++..++++.++.|+++|++.+.+++++.++ .++.++ ++.++++++++++.+++ .| +.+.+
T Consensus 79 ~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~--~g~~~v~~ 155 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLRE--AGPIKVST 155 (216)
T ss_pred HhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--hCCcceEE
Confidence 8753 35566667767779999999999999999999998755 665555 47899999999999999 99 88999
Q ss_pred eEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
.+++|+ +++.+++.++++++++++++.+.++++. .| |+++
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~ 198 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHH
Confidence 999999 7999999999999999999998887665 13 6665
No 78
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.82 E-value=6.7e-19 Score=168.11 Aligned_cols=218 Identities=14% Similarity=0.234 Sum_probs=165.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCC----CCCCchHHHHHHHHH-C----CCcEEEEEeccCCCCCCCcHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAP----PDPMEPENTAKAIAS-W----GVDYIVLTSVDRDDIPDGGSGHFARTV 173 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~----~~~~ei~~~~~~~~~-~----G~~~i~l~gg~~~~l~~~~~~~l~~li 173 (328)
..+....-+.|...|.||.++....... .+.+.+.++++.... . -++.|+|.||+|..+. .+.+..++
T Consensus 34 ~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 34 PLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred ceEEEEEcccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 4556667899999999999986432211 123333444444333 2 2667899999987666 58888888
Q ss_pred HHHHHhCC--C--cEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 020304 174 KAMKKQKP--D--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 174 ~~ik~~~~--~--~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
+.|++.++ + ..+.+-.+....+.+.++.|+++|++|+++|+++++. +.+.+. ..++.++..++++.+++ .|+
T Consensus 111 ~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~--~g~ 187 (416)
T COG0635 111 KALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARK--AGF 187 (416)
T ss_pred HHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH--cCC
Confidence 88887662 2 4444444555569999999999999999999999965 554444 47999999999999999 999
Q ss_pred e-EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCcc-cCC-CCC-----HHHHHHHHHHHHhcCCc
Q 020304 249 I-TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLT-VKE-YVT-----PEKFDFWKAYGESIGFR 317 (328)
Q Consensus 249 ~-v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~-~~~-~~~-----~~~~~~l~~~~~~~G~~ 317 (328)
. ++.++|+|+ ++|.+++.++++.+.+++++.++++++. .| |+.+.. ..+ .++ .+.++...+...+.||+
T Consensus 188 ~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 188 TSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred CcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCc
Confidence 7 999999999 9999999999999999999999998876 36 766521 111 122 23456677888999999
Q ss_pred eeeeccccc
Q 020304 318 YVASGPLVS 326 (328)
Q Consensus 318 ~~~~g~~~~ 326 (328)
+++..+++|
T Consensus 268 ~yeisnfa~ 276 (416)
T COG0635 268 QYEISNFAK 276 (416)
T ss_pred EEeechhcC
Confidence 999998886
No 79
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.81 E-value=2e-18 Score=148.05 Aligned_cols=177 Identities=24% Similarity=0.377 Sum_probs=141.9
Q ss_pred EeCCCCCCCCCCCccCCCCCCCCCCCC---chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcE
Q 020304 108 LLGDTCTRGCRFCAVKTSRNPAPPDPM---EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (328)
Q Consensus 108 ~~t~gC~~~C~FC~~~~~~~~~~~~~~---ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~ 184 (328)
.++++|+++|.||.............. ++.+.+......+.+.+.++||++. .. ..+.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~-~~----~~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPL-LY----PELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCC-cc----HhHHHHHHHHHhhCCCce
Confidence 468999999999999875543333332 4566666777788889999888863 22 388999999998867788
Q ss_pred EEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCH
Q 020304 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESD 262 (328)
Q Consensus 185 i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~ 262 (328)
+.+.|++..++++.++.|+++|+..+.+++|+.++ .++.+.++..++++++++++.+++ .|+.+.+.+++|+ +++.
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELRE--AGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHH--cCCCceEEEEEecCCChh
Confidence 88888877668999999999999999999999865 444332246799999999999999 8999999999999 6677
Q ss_pred HHHHHHHHHHHhCC-CCEEeeecccCC---CCCC
Q 020304 263 DDLKEAMADLRSID-VDILTLGQYLQP---TPLH 292 (328)
Q Consensus 263 e~~~~~l~~l~~l~-~~~i~i~~~l~P---Tp~~ 292 (328)
+++.++++.+.+.+ ++.+.++++. | |+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~-p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRSPDRVSLFRLL-PEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhc-ccCCCeee
Confidence 99999999999988 8888887665 4 5554
No 80
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.80 E-value=6.6e-18 Score=157.61 Aligned_cols=190 Identities=19% Similarity=0.226 Sum_probs=143.0
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCC---CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~---~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
.+..+.+|++||.+|.||...... ....++.+++.+.++++.+.|++.|.|+||+|. +. +++.++++.+++.
T Consensus 14 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPl-lr----~dl~~li~~i~~~ 88 (329)
T PRK13361 14 TYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPL-VR----RGCDQLVARLGKL 88 (329)
T ss_pred CeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCC-cc----ccHHHHHHHHHhC
Confidence 355567899999999999754321 122456778888888888999999999999963 32 5688899998876
Q ss_pred CCCc-EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEE
Q 020304 180 KPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIML 256 (328)
Q Consensus 180 ~~~~-~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~iv 256 (328)
+++ .+.+.||+..+ .+.++.|+++|+++++++++++++ .++.++ +..+++++++.++.+++ .|+ .+..++++
T Consensus 89 -~~l~~i~itTNG~ll-~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~--~Gi~~v~in~v~ 163 (329)
T PRK13361 89 -PGLEELSLTTNGSRL-ARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA--AGFERIKLNAVI 163 (329)
T ss_pred -CCCceEEEEeChhHH-HHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH--cCCCceEEEEEE
Confidence 344 46666777654 468999999999999999999865 666666 35789999999999999 999 67777665
Q ss_pred EcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC--cccCCCCCHHHH
Q 020304 257 GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH--LTVKEYVTPEKF 304 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~--~~~~~~~~~~~~ 304 (328)
--|++.+++.+++++++++|++...+ .++ |.... +.....++.+++
T Consensus 164 ~~g~N~~ei~~~~~~~~~~gi~~~~i-e~m-P~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 164 LRGQNDDEVLDLVEFCRERGLDIAFI-EEM-PLGEIDERRRARHCSSDEV 211 (329)
T ss_pred ECCCCHHHHHHHHHHHHhcCCeEEEE-ecc-cCCCccchhhccCcCHHHH
Confidence 34899999999999999999986533 455 63321 112245566555
No 81
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.79 E-value=7.5e-18 Score=155.09 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=133.6
Q ss_pred EEEEEeCCCCCC--------CCCCCccCCCCCCC---CCCCCchHHHHHHHH----HCCCcEEEEEeccCCCCCCCcHHH
Q 020304 104 ATIMLLGDTCTR--------GCRFCAVKTSRNPA---PPDPMEPENTAKAIA----SWGVDYIVLTSVDRDDIPDGGSGH 168 (328)
Q Consensus 104 ~~~i~~t~gC~~--------~C~FC~~~~~~~~~---~~~~~ei~~~~~~~~----~~G~~~i~l~gg~~~~l~~~~~~~ 168 (328)
...+..+-.||+ .|+||+...+.... ....+++.+.+++.. +.+...++|+||++..++ .++
T Consensus 19 k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~---~~~ 95 (302)
T TIGR01212 19 KITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAP---VEV 95 (302)
T ss_pred EeecCCCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCC---HHH
Confidence 344556888997 69999886543222 123445554444332 222224788899876555 699
Q ss_pred HHHHHHHHHHhCCC-cEEEEEeCCCCCCHHHHHHHH---HcCC-cEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHH
Q 020304 169 FARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLV---HSGL-DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAK 242 (328)
Q Consensus 169 l~~li~~ik~~~~~-~~i~~~t~~~~~~~e~l~~L~---~aG~-~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~ 242 (328)
+.++++.+++. +. +.+.+.+....++++.++.|+ ++|+ .++.+|+||+++ ..+.++ ++++.++++++++.++
T Consensus 96 L~~l~~~i~~~-~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~l~ 173 (302)
T TIGR01212 96 LKEMYEQALSY-DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKRAR 173 (302)
T ss_pred HHHHHHHHhCC-CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHHHH
Confidence 99999999874 44 455555544445776666555 5699 579999999865 444444 4899999999999999
Q ss_pred HhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 243 LSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 243 ~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
+ .|+.+++++|+|+ |||.+++.++++++.+++++.+.++++. .| |+++
T Consensus 174 ~--~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~ 224 (302)
T TIGR01212 174 K--RGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMA 224 (302)
T ss_pred H--cCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHH
Confidence 9 9999999999999 9999999999999999999999997654 24 7775
No 82
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.78 E-value=3.7e-17 Score=155.54 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=141.1
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCC--CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~--~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
....+.+|+.||.+|.||...... ....++.+++.+.++++.+.|+..|.|+||++. +. +++.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPL-LR----KDLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccC-Cc----hhHHHHHHHHHHc-
Confidence 667788999999999999875422 223456677888888988999999999999963 43 5688999999876
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC
Q 020304 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (328)
Q Consensus 181 ~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg 259 (328)
++.+.+.||+.+++++.++.|+++|++.+.+++++.+ +.++.+++...++++.+++++.+++ .|+.+.+.+++ ..
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~--~g~~v~i~~vv-~~ 165 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA--HGYPLTLNAVI-HR 165 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH--CCCceEEEEEe-ec
Confidence 5666778899888999999999999999999999974 4676666444589999999999999 99987766554 37
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
++.+++.++++++.++|++.+.+.
T Consensus 166 ~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 166 HNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999998874
No 83
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.78 E-value=2.9e-17 Score=153.78 Aligned_cols=175 Identities=18% Similarity=0.220 Sum_probs=138.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCC-CC----CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKT-SR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~-~~----~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
.+..+.+|++||.+|.||.... .. ....++.+++.+.++.+.+.|++.|.|+||+|. +. +++.++++.++
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPl-l~----~~l~~li~~i~ 84 (334)
T TIGR02666 10 DYLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPL-LR----KDLVELVARLA 84 (334)
T ss_pred CeEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccc-cc----CCHHHHHHHHH
Confidence 3555678999999999998764 21 123456778888899999999999999999973 33 45788888887
Q ss_pred HhCCCc-EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeE
Q 020304 178 KQKPDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSI 254 (328)
Q Consensus 178 ~~~~~~-~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ 254 (328)
+. +++ .+.+.||+.. ..+.++.|+++|++.+.++++++++ .++.+++.+.++++++++++.+++ .|+. +..++
T Consensus 85 ~~-~gi~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~--~G~~~v~in~ 160 (334)
T TIGR02666 85 AL-PGIEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA--AGLEPVKLNT 160 (334)
T ss_pred hc-CCCCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH--cCCCcEEEEE
Confidence 74 466 6777777765 4678999999999999999999865 566555335699999999999999 9997 88887
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 255 ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
++..|.+.+++.+.+++++++|++. .+..++ |
T Consensus 161 vv~~g~n~~ei~~l~~~~~~~gv~~-~~ie~m-p 192 (334)
T TIGR02666 161 VVMRGVNDDEIVDLAEFAKERGVTL-RFIELM-P 192 (334)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCeE-EEEecc-C
Confidence 7655899999999999999999973 443455 6
No 84
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.77 E-value=5.5e-17 Score=156.14 Aligned_cols=215 Identities=11% Similarity=0.134 Sum_probs=144.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC---CCCCCchHHHHHHHHHCC--CcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA---PPDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~---~~~~~ei~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
..++...-+.|+.+|.||+++...... ..+.+.+.++++.+.+.| ++.++|.||+|..+ .+.+.++++.++
T Consensus 52 ~~~LYvHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l----~~~L~~ll~~i~ 127 (433)
T PRK08629 52 KYMLYAHVPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL----EDELAKTLELAK 127 (433)
T ss_pred cEEEEEEeCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC----HHHHHHHHHHHH
Confidence 345555678899999999998642111 123455666666665554 45778888886543 378899999998
Q ss_pred HhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCH---HHHHHHHHHHHHhCCCCeEEEe
Q 020304 178 KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGY---EQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 178 ~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~---~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+.++-..+.+.++...++++.++.|+++ ++++++|+|++++ +.+.+. ..++. ++.++.++.+++ .+..++++
T Consensus 128 ~~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~--~~~~v~~D 203 (433)
T PRK08629 128 KLFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKG--LFPIINVD 203 (433)
T ss_pred HhCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhc--cCCeEEEE
Confidence 8763224555455455699999999999 9999999999965 444443 25665 444555555555 44558999
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCccc-CCCCCHHH---HHHHHHHHHhcCCceeeeccccc
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTV-KEYVTPEK---FDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~-~~~~~~~~---~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+|+|+ |||.+++.++++++.+++++.++++++.. | |...... .+....+. +..+.....+ ||.++....++|
T Consensus 204 lI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~ 282 (433)
T PRK08629 204 LIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSK 282 (433)
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCC
Confidence 99999 99999999999999999999999987652 4 5432111 11112222 2222222334 999977665553
No 85
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.77 E-value=4.5e-18 Score=141.65 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=124.2
Q ss_pred EEeCCCCCCCCCCCccCCC--C-CCCCCCCCchHHHHHHH-HHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh-CC
Q 020304 107 MLLGDTCTRGCRFCAVKTS--R-NPAPPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KP 181 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~--~-~~~~~~~~ei~~~~~~~-~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~-~~ 181 (328)
++++++|+++|.||..+.. . ......++++.+.++++ ...|...+.++||++... ..+.+++..+.+. ..
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~~ 75 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKKR 75 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTCT
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhcc
Confidence 4679999999999999874 1 12234567788888888 588877888888886433 4556666666654 25
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-
Q 020304 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL- 258 (328)
Q Consensus 182 ~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~--~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl- 258 (328)
++.+...|++...+++.++.|+++|++.+.+++++.++ +.+.++ ++.++++++++++.+++ .|+.....+|+|+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~--~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE--AGIPRVIIFIVGLP 152 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH--TTSETEEEEEEEBT
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH--cCCCcEEEEEEEeC
Confidence 78888888887767999999999999999999999865 567775 57899999999999999 9998566777777
Q ss_pred CCCHHHHHHHHHHH
Q 020304 259 GESDDDLKEAMADL 272 (328)
Q Consensus 259 gEt~e~~~~~l~~l 272 (328)
|+|.+|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
No 86
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.76 E-value=8.2e-17 Score=152.11 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=139.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCC--CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~--~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
....+++|+.||.+|.||...... ....++.+++.+.++++.+.|+..|.|+||+|. +. +++.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPL-AR----PDLVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccc-cc----ccHHHHHHHHHHc-
Confidence 566778999999999999875321 223456677888889999999999999999974 43 4688999999886
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC
Q 020304 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (328)
Q Consensus 181 ~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg 259 (328)
++.+.+.||+.+++++.++.|+++|++.+.+++++.++ .++.+++...++++.+++++.+++ .|+.+...+++ ..
T Consensus 81 -g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~--~g~~v~v~~vv-~~ 156 (358)
T TIGR02109 81 -GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA--AGLPLTLNFVI-HR 156 (358)
T ss_pred -CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh--CCCceEEEEEe-cc
Confidence 56777788998889999999999999999999999854 666666334579999999999999 99987665544 38
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
++.+++.++++++.++|++.+.+.
T Consensus 157 ~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 157 HNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999988774
No 87
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.76 E-value=5.5e-17 Score=151.70 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=135.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCCC----CCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTS----RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~----~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
.+..+.+|.+||.+|.||..... .....++.+++.+.++.+.+.|++.|.|+||+|. +. +.+.++++.+++
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~li~~i~~ 91 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPL-LR----KDLEDIIAALAA 91 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-Cc----cCHHHHHHHHHh
Confidence 35557789999999999987542 1123456788888888888899999999999963 33 457888888887
Q ss_pred hCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEE
Q 020304 179 QKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIML 256 (328)
Q Consensus 179 ~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~iv 256 (328)
......+.+.||+.. ..+.++.|+++|++.+.++++++++ .++.++ +..++++++++++.+++ .|+ .+..++++
T Consensus 92 ~~~~~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~--~g~~~v~i~~vv 167 (331)
T PRK00164 92 LPGIRDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALA--AGLTPVKVNAVL 167 (331)
T ss_pred cCCCceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHH--CCCCcEEEEEEE
Confidence 632346666677654 4578999999999999999999865 565555 35789999999999999 998 77777665
Q ss_pred EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 257 GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-.|.+.+++.+.+++++++|++. .+..|+
T Consensus 168 ~~g~n~~ei~~l~~~~~~~gv~v-~~ie~~ 196 (331)
T PRK00164 168 MKGVNDDEIPDLLEWAKDRGIQL-RFIELM 196 (331)
T ss_pred ECCCCHHHHHHHHHHHHhCCCeE-EEEEee
Confidence 34889999999999999999864 333555
No 88
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.75 E-value=1.9e-16 Score=146.37 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=132.2
Q ss_pred eEEEEEeCCCCCC----CCCCCccCCCCCCCCCCCCchHHHHHHHHH-CCCcE----E-EEEec---cCCCCCCCcHHHH
Q 020304 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDY----I-VLTSV---DRDDIPDGGSGHF 169 (328)
Q Consensus 103 ~~~~i~~t~gC~~----~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~G~~~----i-~l~gg---~~~~l~~~~~~~l 169 (328)
..+++..|+||++ +|+||++.... ....+++.+.+.++.+.+ .+.+. + .+++| ++..++ .+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~~ 90 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KETR 90 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHHH
Confidence 4556778999999 59999865432 223467777777776553 33321 2 35555 332233 5788
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCC
Q 020304 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKK 246 (328)
Q Consensus 170 ~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~-~~~~~~~~~~~~~l~~i~~~~~~~~ 246 (328)
.++++.+++...-..+.+.+....++++.++.|+++|++ ++.+|+||+++ +. +.++ ++++.+++.++++.+++ .
T Consensus 91 ~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~--~ 167 (313)
T TIGR01210 91 NYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK--Y 167 (313)
T ss_pred HHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH--c
Confidence 899999887521224455554445699999999999998 89999999865 55 3455 58999999999999999 9
Q ss_pred CCeEEEeEEEEc-C----CCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 247 GLITKSSIMLGL-G----ESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 247 Gi~v~~~~ivGl-g----Et~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
|+.+.+++|+|+ + |+.+++.++++++.+++ +.+.+++.. .| |+++
T Consensus 168 Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 168 GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVE 219 (313)
T ss_pred CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHH
Confidence 999999999998 6 45577888999999998 999886543 24 6653
No 89
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.74 E-value=3.8e-16 Score=144.89 Aligned_cols=173 Identities=12% Similarity=0.169 Sum_probs=131.2
Q ss_pred ceeeEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 100 GIATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 100 ~~~~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
.+.....+++|..||.+|.||........ ..++.++ ..+.+.+.|+..|.|+||+| .+. +++.++++.+
T Consensus 25 ~~Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee---~~~~i~e~g~~~V~i~GGEP-LL~----pdl~eiv~~~ 96 (318)
T TIGR03470 25 RFPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEE---CLRAVDECGAPVVSIPGGEP-LLH----PEIDEIVRGL 96 (318)
T ss_pred CCCCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHH---HHHHHHHcCCCEEEEeCccc-ccc----ccHHHHHHHH
Confidence 34466778899999999999986543211 1233333 34445567899999999986 343 4588999999
Q ss_pred HHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Q 020304 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 177 k~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
++. +..+.+.||+.+++ +.++.++++|...+.+++++.++.+...++.+.+++..+++++.+++ .|+.+.+.+.+
T Consensus 97 ~~~--g~~v~l~TNG~ll~-~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~--~G~~v~v~~tv 171 (318)
T TIGR03470 97 VAR--KKFVYLCTNALLLE-KKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA--RGFRVTTNTTL 171 (318)
T ss_pred HHc--CCeEEEecCceehH-HHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH--CCCcEEEEEEE
Confidence 876 46677778887654 55888999999999999988766654443345689999999999999 99988776655
Q ss_pred EcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 257 GLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
--+++.+++.+.++++.++|++.+.+.+.
T Consensus 172 ~~~~n~~ei~~~~~~~~~lGv~~i~i~p~ 200 (318)
T TIGR03470 172 FNDTDPEEVAEFFDYLTDLGVDGMTISPG 200 (318)
T ss_pred eCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 23799999999999999999998877533
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.73 E-value=1.4e-16 Score=147.09 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=135.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCC--CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRN--PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~--~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
.+..+.+|++||.+|.||....... ...++.+++.+.++.+...|++.|.|+||+|. +. ..+.++++.+++.
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPl-l~----~~l~~iv~~l~~~- 83 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPL-LR----KDLIEIIRRIKDY- 83 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccc-cc----cCHHHHHHHHHhC-
Confidence 3556788999999999998754322 12356678888888888899999999999963 43 4577889988876
Q ss_pred CCc-EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEE
Q 020304 181 PDI-MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLG 257 (328)
Q Consensus 181 ~~~-~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivG 257 (328)
++ .+.+.||+.. .++.++.|+++|++++.++++++++ .++.++ ++.++++++++++.+++ .|+. +...+++-
T Consensus 84 -g~~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~--~G~~~v~i~~v~~ 158 (302)
T TIGR02668 84 -GIKDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD--AGLTPVKLNMVVL 158 (302)
T ss_pred -CCceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH--cCCCcEEEEEEEe
Confidence 45 6666677654 4788999999999999999999864 666666 35689999999999999 9986 77777664
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 258 LGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 258 lgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-|++.+++.+.+++++++|++ +.+..++
T Consensus 159 ~g~n~~ei~~~~~~~~~~g~~-~~~ie~~ 186 (302)
T TIGR02668 159 KGINDNEIPDMVEFAAEGGAI-LQLIELM 186 (302)
T ss_pred CCCCHHHHHHHHHHHHhcCCE-EEEEEEe
Confidence 489999999999999999987 3443454
No 91
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.73 E-value=5.6e-16 Score=146.51 Aligned_cols=174 Identities=17% Similarity=0.244 Sum_probs=132.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCC----CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRN----PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~----~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
.+.-+.+|++||.+|.||....... ...++.+++.+.++.+.+.|++.|.|+||+| .+. ..+.++++.+++
T Consensus 58 ~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEP-llr----~dl~eli~~l~~ 132 (373)
T PLN02951 58 NYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEP-TLR----KDIEDICLQLSS 132 (373)
T ss_pred cEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC-cch----hhHHHHHHHHHh
Confidence 3445678999999999997653211 1235667888888888899999999999996 343 568889999887
Q ss_pred hCCCcE-EEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEE
Q 020304 179 QKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGL-ITKSSIM 255 (328)
Q Consensus 179 ~~~~~~-i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~i 255 (328)
. +++. +.+.||+..+ .+.++.|+++|++++.++++++++ .++.++ ....++++++.++.+++ .|+ .+..+++
T Consensus 133 ~-~gi~~i~itTNG~lL-~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~--~G~~~vkin~v 207 (373)
T PLN02951 133 L-KGLKTLAMTTNGITL-SRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIE--LGYNPVKVNCV 207 (373)
T ss_pred c-CCCceEEEeeCcchH-HHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHH--cCCCcEEEEEE
Confidence 6 4553 6566777654 567899999999999999999854 555554 24568999999999999 897 4777766
Q ss_pred EEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
+-.|.+.+++.+.++++++.++.. .+..|+ |
T Consensus 208 v~~g~N~~Ei~~li~~a~~~gi~v-r~ie~m-P 238 (373)
T PLN02951 208 VMRGFNDDEICDFVELTRDKPINV-RFIEFM-P 238 (373)
T ss_pred ecCCCCHHHHHHHHHHHHhCCCeE-EEEEcc-c
Confidence 544899999999999999999764 333465 5
No 92
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.72 E-value=2.6e-16 Score=143.13 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=135.8
Q ss_pred EEEEEeCCCCCCCCCCCccCC-C-CCC--CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 104 ATIMLLGDTCTRGCRFCAVKT-S-RNP--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~-~-~~~--~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
.--+.+|..||++|.||-..- . ..+ ..++++|+...++.+.+.|++.|-||||+| .+. .++.++++.+++.
T Consensus 12 ~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-llR----~dl~eIi~~l~~~ 86 (322)
T COG2896 12 YLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LLR----KDLDEIIARLARL 86 (322)
T ss_pred eEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hhh----cCHHHHHHHHhhc
Confidence 334567999999999996644 1 112 245788999999999999999999999996 343 6788889988876
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEE
Q 020304 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLG 257 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivG 257 (328)
.-..+...||+. +.+..++.|++||+++++++++++++ .++.+.. ...++++++.++.|.+ .|+. |+.++.+=
T Consensus 87 -~~~~islTTNG~-~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~-~~~~~~Vl~GI~~A~~--~Gl~pVKlN~Vv~ 161 (322)
T COG2896 87 -GIRDLSLTTNGV-LLARRAADLKEAGLDRVNVSLDSLDPEKFRKITG-RDRLDRVLEGIDAAVE--AGLTPVKLNTVLM 161 (322)
T ss_pred -ccceEEEecchh-hHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhC-CCcHHHHHHHHHHHHH--cCCCceEEEEEEe
Confidence 223454444554 47899999999999999999999976 6666663 4459999999999999 9996 99998873
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 258 LGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 258 lgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
-|-+.+++.+.++++++.|+.. .+-.|+ |
T Consensus 162 kgvNd~ei~~l~e~~~~~~~~l-rfIE~m-~ 190 (322)
T COG2896 162 KGVNDDEIEDLLEFAKERGAQL-RFIELM-P 190 (322)
T ss_pred cCCCHHHHHHHHHHHhhcCCce-EEEEEe-e
Confidence 3889999999999999999854 332455 5
No 93
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.72 E-value=1.2e-15 Score=146.81 Aligned_cols=214 Identities=17% Similarity=0.249 Sum_probs=153.2
Q ss_pred ccccCCCCceeeEEEEEeCCCCCCCCCCCccCCC-----CC---CCCCCCCchHHHHHHHHHC--CCcEEEEEe-ccCCC
Q 020304 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTS-----RN---PAPPDPMEPENTAKAIASW--GVDYIVLTS-VDRDD 160 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~-----~~---~~~~~~~ei~~~~~~~~~~--G~~~i~l~g-g~~~~ 160 (328)
.||.......+-+..+.++++||.+|.||..... +. ...++++|+.+.++.+... ++..|.|+| |+|.
T Consensus 13 pc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL- 91 (442)
T TIGR01290 13 PCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL- 91 (442)
T ss_pred CCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-
Confidence 4565433344467778899999999999986532 11 1235677887777776653 567889999 7763
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhh------cCC---CC-
Q 020304 161 IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV------RDP---RA- 229 (328)
Q Consensus 161 l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~------~~~---~~- 229 (328)
+. ++...++++.+++..|++.+.+.||+.. .++.++.|+++|++.+.+++.+.++ .++.+ ++. +.
T Consensus 92 l~---~e~~~~~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~ 167 (442)
T TIGR01290 92 AN---IGKTFQTLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGRE 167 (442)
T ss_pred cC---ccccHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcc
Confidence 32 3667788888888878888877788764 5899999999999999998887654 44322 111 11
Q ss_pred ----CHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCC-----CCcccCCCCC
Q 020304 230 ----GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP-----LHLTVKEYVT 300 (328)
Q Consensus 230 ----~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp-----~~~~~~~~~~ 300 (328)
.+++.++.++.+.+ .|+.+...+++=.|.+.+++.++.++++++|++.+.+.+|. |.| +.+...+..+
T Consensus 168 ~~~il~e~~l~~l~~l~~--~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~-~~p~~G~~~~~~~~~~ps 244 (442)
T TIGR01290 168 AADLLIERQLEGLEKLTE--RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLI-SAPEHGTVYGLNGQREPD 244 (442)
T ss_pred hHHHHHHHHHHHHHHHHh--CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCC-CccccCCccCcCCCCCcC
Confidence 15677899999999 99987777665447788999999999999999877776565 433 2222235677
Q ss_pred HHHHHHHHHHHHh
Q 020304 301 PEKFDFWKAYGES 313 (328)
Q Consensus 301 ~~~~~~l~~~~~~ 313 (328)
+++++.+++.+.+
T Consensus 245 ~e~l~~~~~~~~~ 257 (442)
T TIGR01290 245 PDELAALRDRLEM 257 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776553
No 94
>PRK01254 hypothetical protein; Provisional
Probab=99.72 E-value=2.5e-16 Score=153.95 Aligned_cols=186 Identities=14% Similarity=0.148 Sum_probs=135.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC--CCCCCchHHHHHHHHHC--CCcEEE--EEeccCCCCCC-------------
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA--PPDPMEPENTAKAIASW--GVDYIV--LTSVDRDDIPD------------- 163 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~--~~~~~ei~~~~~~~~~~--G~~~i~--l~gg~~~~l~~------------- 163 (328)
...++.+++||+.+|+||+++..++.. .++.++|+++++.+.+. |++++. ++|.+...|..
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 457788999999999999999877662 35678899999999863 999988 66655443431
Q ss_pred -------------CcHHHHHHHHHHHHHhCCCcEEEEEeCC----CC-CCHHHHHHHHHcCCc-EEeechhhHHH-HHhh
Q 020304 164 -------------GGSGHFARTVKAMKKQKPDIMVECLTSD----FR-GDLRAVETLVHSGLD-VFAHNIETVKR-LQRI 223 (328)
Q Consensus 164 -------------~~~~~l~~li~~ik~~~~~~~i~~~t~~----~~-~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~ 223 (328)
.+...+.+|++.|++. +++.......+ .. .+++.++.|++..+. .+.+.+|..++ +.+.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1235799999999875 66643222222 11 258899999998766 44456776543 3333
Q ss_pred hc-CCCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCC
Q 020304 224 VR-DPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290 (328)
Q Consensus 224 ~~-~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp 290 (328)
++ +...+++++.+.++.+++..+ ++.+.++||+|+ |||++|+.++++++++++++...+. .+.|||
T Consensus 531 M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ-~FTPtP 599 (707)
T PRK01254 531 MMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQ-NFYPSP 599 (707)
T ss_pred hCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceee-eeecCC
Confidence 33 223688999999999977433 456778999999 9999999999999999998877774 334766
No 95
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-16 Score=142.95 Aligned_cols=204 Identities=20% Similarity=0.292 Sum_probs=157.7
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCCCCC-CchHHHHHHHHHCCCcEEEEEeccCCCCCCCc----------------
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------- 165 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~-~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------- 165 (328)
+.+|+.+.+||++-|+||.++..++..+..| +.|+++++.+.+.|++++.+.|.+...|.|..
T Consensus 220 ~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GF 299 (552)
T KOG2492|consen 220 TTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGF 299 (552)
T ss_pred chhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCc
Confidence 6778889999999999999998887666555 56899999999999999999997654443310
Q ss_pred ---------HHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--HHHHHHHHHcC-CcEEee------chhhHHHHHhhhcCC
Q 020304 166 ---------SGHFARTVKAMKKQKPDIMVECLTSDFRGD--LRAVETLVHSG-LDVFAH------NIETVKRLQRIVRDP 227 (328)
Q Consensus 166 ---------~~~l~~li~~ik~~~~~~~i~~~t~~~~~~--~e~l~~L~~aG-~~~i~~------~~et~~~~~~~~~~~ 227 (328)
--.|..+++.+....|++.+. +|+....| +|+++.+++.. ++...| +.++++.|++
T Consensus 300 st~yK~K~gGl~Fa~LLd~vs~~~PemR~R-FTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrR----- 373 (552)
T KOG2492|consen 300 STVYKPKQGGLRFAHLLDQVSRADPEMRIR-FTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRR----- 373 (552)
T ss_pred eeeecccCCCccHHHHHHHHhhhCcceEEE-ecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHc-----
Confidence 136889999999999998885 56555544 78999999876 444333 3333444444
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC--CCCCCccc----CCCCC
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ--PTPLHLTV----KEYVT 300 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~--PTp~~~~~----~~~~~ 300 (328)
+++.+.+++.++.+++..+|...+++||.|+ |||++|.+.++-++++.|-+++.+|.|+. -|..+... .+.++
T Consensus 374 gysreayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 374 GYSREAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred cCChHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 7899999999999999999999999999999 99999999999999999999998888874 36666433 34445
Q ss_pred HHHHHHHHHHHH
Q 020304 301 PEKFDFWKAYGE 312 (328)
Q Consensus 301 ~~~~~~l~~~~~ 312 (328)
.+.+.+|..+-+
T Consensus 454 nrrl~~Li~~Fr 465 (552)
T KOG2492|consen 454 NRRLFELITFFR 465 (552)
T ss_pred HHHHHHHHHHHH
Confidence 556666655544
No 96
>PRK00955 hypothetical protein; Provisional
Probab=99.70 E-value=7.6e-16 Score=151.39 Aligned_cols=181 Identities=13% Similarity=0.190 Sum_probs=122.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC--CCCCCchHHHHHHHHHC-CCcEEEE-Eec-cCCCCC---------------
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA--PPDPMEPENTAKAIASW-GVDYIVL-TSV-DRDDIP--------------- 162 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~--~~~~~ei~~~~~~~~~~-G~~~i~l-~gg-~~~~l~--------------- 162 (328)
....+.+++||+.+|+||+++..++.. .++.++|+++++.+.+. |++.++- .|| +...|.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 456678899999999999999877653 45678899999998876 8887632 233 111111
Q ss_pred -----------CCcHHHHHHHHHHHHHhCCCcEEEEEeCC----CC---CCHHHHHHHHHcCCc-EEeechhhHH-HHHh
Q 020304 163 -----------DGGSGHFARTVKAMKKQKPDIMVECLTSD----FR---GDLRAVETLVHSGLD-VFAHNIETVK-RLQR 222 (328)
Q Consensus 163 -----------~~~~~~l~~li~~ik~~~~~~~i~~~t~~----~~---~~~e~l~~L~~aG~~-~i~~~~et~~-~~~~ 222 (328)
+.+...+.+|++.|++. +++.....+++ .+ .+++.++.|.+..+. .+.+++|+.+ ++.+
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 11235799999999876 56644333332 11 135688888887544 5667888864 3444
Q ss_pred hhcCCC-CCHHHHHHHH-HHHHHhCCCCe--EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 223 IVRDPR-AGYEQSLEVL-KHAKLSKKGLI--TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 223 ~~~~~~-~~~~~~l~~i-~~~~~~~~Gi~--v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.++++. ..++++++.+ +.+++ .|+. +.++||+|+ |||++|+.++++++++++++.++++.|.
T Consensus 451 ~M~K~~~~~~~~f~~~~~~i~~~--~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fT 517 (620)
T PRK00955 451 LMGKPSREVYDKFVKKFDRINKK--LGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFY 517 (620)
T ss_pred HhCCCCHHHHHHHHHHHHHhhhh--cCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeee
Confidence 444221 1233333333 33345 6665 889999999 9999999999999999999998887676
No 97
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.67 E-value=6.3e-15 Score=124.86 Aligned_cols=209 Identities=19% Similarity=0.166 Sum_probs=159.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~ 182 (328)
..++..+++.|..+|.+|..+..++....+..++++...++.+.|++.+.++||-.+.. +-..+.+.+.+++++++. +
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg-~VPl~kf~d~lK~lke~~-~ 88 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG-KVPLWKFKDELKALKERT-G 88 (275)
T ss_pred CceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCC-CccHHHHHHHHHHHHHhh-C
Confidence 55666789999999999998876666565667888889999999999999998864322 234689999999999984 6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHcCCcEEee----chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAH----NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 183 ~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~----~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
+.+.+.+ ++ .+++.++.|+++++|.+++ +.++.++++++ ..+.+++++.++.+++ .|+.+.-++++|+
T Consensus 89 l~inaHv-Gf-vdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l----~ksv~dyl~~l~~L~e--~~irvvpHitiGL 160 (275)
T COG1856 89 LLINAHV-GF-VDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKL----PKSVEDYLRSLLLLKE--NGIRVVPHITIGL 160 (275)
T ss_pred eEEEEEe-ee-ccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcC----CccHHHHHHHHHHHHH--cCceeceeEEEEe
Confidence 7776533 34 4899999999999999987 33455666664 4588999999999999 9999999999999
Q ss_pred -CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC-cccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 259 -GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 259 -gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~-~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+-..+.=.+.++.|.+..+|.+.+.-+ .|||.. |...+..+.++..++...|++.-=+-+..|
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vl-iPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iG 225 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVL-IPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIG 225 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEE-ecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEe
Confidence 433333346789999999998887534 487764 445566777887777778877433324334
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.67 E-value=1.2e-14 Score=129.28 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=136.4
Q ss_pred EEEEeCCCCCCCCCCCccCCCCC---CCCCCCCchHHHHHHHHHCC---CcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~---~~~~~~~ei~~~~~~~~~~G---~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
.++..+.|||++|.||..+.... ....+++++.+.++.+.... ...|.|+||+|. +. .+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l~---~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-LQ---PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-cC---HHHHHHHHHHHHH
Confidence 44477889999999998654321 12355667766666654432 247999998863 43 4667799999998
Q ss_pred hCCCcEEEEEeCCCCC-CHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Q 020304 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 179 ~~~~~~i~~~t~~~~~-~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
. ++.+.+.||+... ..+.++.+.+ .++.+.+++++.++ .++.++ +.++++.+++++.+++ .|+.+...+++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~--g~~~~~v~~~i~~l~~--~g~~~~v~~vv 165 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT--GVSLQPTLDFAKYLAK--RNKPIWIRYVL 165 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH--CCCcHHHHHHHHHHHh--CCCcEEEEEee
Confidence 6 5666677887543 1455566655 37888899998754 665565 3388999999999999 89887666665
Q ss_pred Ec--CCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCC----------CcccCCCCCHHHHHHHHHHHHh
Q 020304 257 GL--GESDDDLKEAMADLRSID-VDILTLGQYLQPTPL----------HLTVKEYVTPEKFDFWKAYGES 313 (328)
Q Consensus 257 Gl--gEt~e~~~~~l~~l~~l~-~~~i~i~~~l~PTp~----------~~~~~~~~~~~~~~~l~~~~~~ 313 (328)
.. .++.+++.++++++.+++ +..+.+.+|. |... .+...+..+.++++++++++.+
T Consensus 166 ~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 166 VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYH-QLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCC-cccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 44 568899999999999999 5666664443 3211 1122345677888888887765
No 99
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.66 E-value=1.4e-14 Score=129.92 Aligned_cols=204 Identities=12% Similarity=0.128 Sum_probs=142.3
Q ss_pred EEEEeCCCCCCCCCCCccCCCC---CCCCCCCCchHHHHHHHHH---CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIAS---WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~---~~~~~~~~ei~~~~~~~~~---~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
..+..+.|||++|.||..+... ....++++++.+.++.... .....|.|+||+|. +. .+.+.++++.+++
T Consensus 22 ~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l~---~~~~~~l~~~~k~ 97 (246)
T PRK11145 22 RFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-LQ---AEFVRDWFRACKK 97 (246)
T ss_pred EEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-cC---HHHHHHHHHHHHH
Confidence 3456799999999999865422 1123456666666554432 23357899999863 33 4667799999998
Q ss_pred hCCCcEEEEEeCCCCC-CHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Q 020304 179 QKPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 179 ~~~~~~i~~~t~~~~~-~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
. ++.+...||+... .++.++.+.+. +|.+.+++++.++ .++.++ +.+.+..++.++.+++ .|+.+...+++
T Consensus 98 ~--g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~--g~~~~~~l~~i~~l~~--~g~~v~i~~~l 170 (246)
T PRK11145 98 E--GIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFARYLAK--RNQKTWIRYVV 170 (246)
T ss_pred c--CCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhccccc--CCChHHHHHHHHHHHh--CCCcEEEEEEE
Confidence 6 6677667777653 35777777664 7889999999865 666666 3456888999999999 88876665544
Q ss_pred --EcCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCC----------CCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 257 --GLGESDDDLKEAMADLRSID-VDILTLGQYLQPTP----------LHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 257 --GlgEt~e~~~~~l~~l~~l~-~~~i~i~~~l~PTp----------~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|+.++++++.++++++++++ +..+.+.+|- |.+ ..+...+..+.++++++++++.+.|+++++
T Consensus 171 i~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~~ 246 (246)
T PRK11145 171 VPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYH-ELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVMY 246 (246)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcceEEEecCC-ccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 55777889999999999986 4555554443 221 111223556788999999999999998753
No 100
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.66 E-value=2.1e-14 Score=140.14 Aligned_cols=187 Identities=17% Similarity=0.183 Sum_probs=137.5
Q ss_pred ceeeEEEEEeCCCCCC-CCCCCccC-------CCCCCCC----------CCC-CchHHHHHHHHHCC--Cc--EEEEEec
Q 020304 100 GIATATIMLLGDTCTR-GCRFCAVK-------TSRNPAP----------PDP-MEPENTAKAIASWG--VD--YIVLTSV 156 (328)
Q Consensus 100 ~~~~~~~i~~t~gC~~-~C~FC~~~-------~~~~~~~----------~~~-~ei~~~~~~~~~~G--~~--~i~l~gg 156 (328)
+|.+.+++-----||+ +|.||.-. .+....+ .+| +++.+.++++...| ++ ++.|.||
T Consensus 65 gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 65 GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 3555666655677995 79999752 1111100 112 35566677887766 43 4488899
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhCCC-------------------------cEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 157 DRDDIPDGGSGHFARTVKAMKKQKPD-------------------------IMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 157 ~~~~l~~~~~~~l~~li~~ik~~~~~-------------------------~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+...++ .++...+++.+.+..++ +.+.+.+....++++.++.|+++|++++.
T Consensus 145 Tft~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 145 TFPARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVE 221 (522)
T ss_pred CcccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 988776 47777777766655433 33334443344599999999999999999
Q ss_pred echhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh---CCCCEEeeeccc
Q 020304 212 HNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS---IDVDILTLGQYL 286 (328)
Q Consensus 212 ~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~---l~~~~i~i~~~l 286 (328)
+|+|++++ ..+.++ ++++.++..++++.+++ .|+.+++++|+|+ |+|.+++.++++.+.+ ++++.+.+++..
T Consensus 222 lGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~--~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~ 298 (522)
T TIGR01211 222 LGVQTIYNDILERTK-RGHTVRDVVEATRLLRD--AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTL 298 (522)
T ss_pred EECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecce
Confidence 99999865 555454 48999999999999999 9999999999999 9999999999999984 999999998654
Q ss_pred -CC-CCCC
Q 020304 287 -QP-TPLH 292 (328)
Q Consensus 287 -~P-Tp~~ 292 (328)
.| |+++
T Consensus 299 V~~gT~L~ 306 (522)
T TIGR01211 299 VTRGTELY 306 (522)
T ss_pred eeCCCHHH
Confidence 23 7665
No 101
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.62 E-value=7e-15 Score=144.03 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=126.5
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC---cHHHHHHHHHHHHHhC
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---GSGHFARTVKAMKKQK 180 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~---~~~~l~~li~~ik~~~ 180 (328)
...+++++|||++|.||+.+...+.....++.+.++++...+.|.+.+.+..++...+... ....+..+...+.+..
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERG 278 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHh
Confidence 5777899999999999999764312334556777777777776666544322222112110 0123333333343332
Q ss_pred C----CcEEEEE-eCCCCCC-HHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHH-HHHHHHHhCCCCeEEE
Q 020304 181 P----DIMVECL-TSDFRGD-LRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLE-VLKHAKLSKKGLITKS 252 (328)
Q Consensus 181 ~----~~~i~~~-t~~~~~~-~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~-~i~~~~~~~~Gi~v~~ 252 (328)
. .+.+.+- .....++ ++.++.++++|+.++.+++|+.++ +.+.+. ++++.++.++ +++.+.+ .|+.+..
T Consensus 279 ~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~--~~~~~~~ 355 (490)
T COG1032 279 LRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE--HGLRVKL 355 (490)
T ss_pred cccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh--CCceeeE
Confidence 1 1333332 1122346 899999999999999999999865 555555 5789999995 9999999 9999999
Q ss_pred eEEEEc-CCCHHHHHHH---HHHHHhCCCC-EEeeecccCC---CCCC
Q 020304 253 SIMLGL-GESDDDLKEA---MADLRSIDVD-ILTLGQYLQP---TPLH 292 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~---l~~l~~l~~~-~i~i~~~l~P---Tp~~ 292 (328)
++|+|+ |||.+++.++ ++++++++.. .+.++.|. | |+..
T Consensus 356 ~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~-p~p~t~~~ 402 (490)
T COG1032 356 YFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFV-PLPGTPLQ 402 (490)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeee-CCCCCchh
Confidence 999999 9999999998 7888999996 67665343 4 6654
No 102
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.62 E-value=5.9e-14 Score=130.30 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=134.0
Q ss_pred eeeEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 101 IATATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 101 ~~~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
+..+..+.+|++|+.+|+||......+. ...+.+++.+.++.+.+ .|+.+|.|+||++..++ .+++.++++.+
T Consensus 86 yp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~---~~~L~~ll~~l 162 (321)
T TIGR03822 86 YPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLS---PRRLGDIMARL 162 (321)
T ss_pred CCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCC---HHHHHHHHHHH
Confidence 3457778899999999999987643222 12344667778887775 48999999999975443 37899999999
Q ss_pred HHhCCCcE-EEEEe-----CCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 177 KKQKPDIM-VECLT-----SDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 177 k~~~~~~~-i~~~t-----~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
++. +.+. +...| ++..++++.++.|+++|+. +.+++++... + .. .++.+++++.+++ .|+.+
T Consensus 163 ~~i-~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~--~-----el-~~~~~~ai~~L~~--~Gi~v 230 (321)
T TIGR03822 163 AAI-DHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHA--R-----EL-TAEARAACARLID--AGIPM 230 (321)
T ss_pred HhC-CCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCCh--h-----hc-CHHHHHHHHHHHH--cCCEE
Confidence 885 4442 22222 2344689999999999954 6677665321 1 11 4889999999999 99987
Q ss_pred EEeEEE--EcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHH
Q 020304 251 KSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKA 309 (328)
Q Consensus 251 ~~~~iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~ 309 (328)
....++ |..++.+++.++.+++.++|+....++.+ .|.+.. ..-.++.++..++.+
T Consensus 231 ~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~-~p~~g~--~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 231 VSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL-DLAPGT--AHFRVTIEEGQALVR 288 (321)
T ss_pred EEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec-CCCCCc--ccccCcHHHHHHHHH
Confidence 665433 77899999999999999999998888543 465442 112355555444433
No 103
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.62 E-value=5.3e-14 Score=125.41 Aligned_cols=201 Identities=17% Similarity=0.247 Sum_probs=139.8
Q ss_pred eCCCCCCCCCCCccCCCCCCCC------CCCCchHHHHHHHHHCC--CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 109 LGDTCTRGCRFCAVKTSRNPAP------PDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 109 ~t~gC~~~C~FC~~~~~~~~~~------~~~~ei~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
.+.||+.+|.||++..+.-+.. .+++.+.+..+..++.. .-+.++-|...|.+- .++.++++++++.
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY----P~l~~lVqalk~~- 187 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY----PHLVDLVQALKEH- 187 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc----hhHHHHHHHHhcC-
Confidence 4899999999999976432221 13444455555554432 226788774444342 7899999999987
Q ss_pred CCcEE-EEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 181 PDIMV-ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 181 ~~~~i-~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
+++.+ +..|++.+++++++++|.+||+|++++++.++++ +-+...+ ..++.+..++..+.+.+ .|+.+-..=+.=
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~l 265 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWL 265 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeec
Confidence 67665 5678888899999999999999999999999976 5444431 24788999999999999 999854432222
Q ss_pred cCCCHHHHHHHHHHHHhCCCC----EEeeecccCCCCCCc-c-cCCCCCHHHH-HHHHHHHHhcCCc
Q 020304 258 LGESDDDLKEAMADLRSIDVD----ILTLGQYLQPTPLHL-T-VKEYVTPEKF-DFWKAYGESIGFR 317 (328)
Q Consensus 258 lgEt~e~~~~~l~~l~~l~~~----~i~i~~~l~PTp~~~-~-~~~~~~~~~~-~~l~~~~~~~G~~ 317 (328)
.|-+++|+...+.+++++|+. .+.+..|+ |-.+.. + ....++-.+| ..|+++-.+.|++
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyi-pyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYI-PYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcceEEee-eecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 378899999999999999864 24454454 422221 1 1233444444 4567777888888
No 104
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.61 E-value=1.8e-13 Score=117.88 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=114.7
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
..+++..|++||.+|.||..+..... ..++++++.+.++... ..++.+.|+||+|. +. .++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGGEPl-l~----~~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGGEPT-LQ----AGLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECCccc-Cc----HhHHHHHHHHHHC
Confidence 45777889999999999988642211 2234455555554431 23678999999863 32 3488999999885
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHcC-CcEEeechhhHHHHHhhhcCCCCCHH-HHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 180 KPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYE-QSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~i~~~~et~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
++.+.+.||+. +++.++.+.++| ++.+.+++++.++.+..+.+.+..++ +.+++++.+++ .|+.+...+++-
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~--~gi~~~i~~~v~ 163 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLR--SGIPFELRTTVH 163 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHH--cCCCEEEEEEEe
Confidence 67777777764 678899999999 68999988876554433322234555 89999999999 898866665553
Q ss_pred c-CCCHHHHHHHHHHHHhCC
Q 020304 258 L-GESDDDLKEAMADLRSID 276 (328)
Q Consensus 258 l-gEt~e~~~~~l~~l~~l~ 276 (328)
- .-..+++.++++++++++
T Consensus 164 ~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 164 RGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred CCCCCHHHHHHHHHHhccCC
Confidence 3 222678999999999988
No 105
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.55 E-value=6.7e-13 Score=124.40 Aligned_cols=195 Identities=17% Similarity=0.263 Sum_probs=147.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCC-CCCCCCCchHHHHHHHHHCC-CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~-~~~~~~~ei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
....+++|+.||.+|.||....... ..+...++..+...++.+.| ...+.++||++. +. .++.++++.+++.
T Consensus 19 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPl-l~----~d~~ei~~~~~~~- 92 (347)
T COG0535 19 LVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPL-LR----PDLLEIVEYARKK- 92 (347)
T ss_pred cEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcc-cc----ccHHHHHHHHhhc-
Confidence 5566678999999999998876553 34455666666778888888 778888888863 43 6788999988876
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC
Q 020304 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG 259 (328)
Q Consensus 181 ~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg 259 (328)
.++.+...|++..++++.++.++++|++.+.+++++.+. .+...++....++..+++++.+++ .|+.+...+.+ .+
T Consensus 93 ~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~--~g~~~~~~~~v-~~ 169 (347)
T COG0535 93 GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE--AGILVVINTTV-TK 169 (347)
T ss_pred CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH--cCCeeeEEEEE-ec
Confidence 577887778876668999999999999999999998764 556666446789999999999999 99974444443 27
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcc-cCCCCCHHHHHHH
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLT-VKEYVTPEKFDFW 307 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~-~~~~~~~~~~~~l 307 (328)
.+.+++.+..+.+.++|++...+.++. |+..... ....+++++.+..
T Consensus 170 ~n~~~l~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 217 (347)
T COG0535 170 INYDELPEIADLAAELGVDELNVFPLI-PVGRGEENLELDLTPEEEELL 217 (347)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEEEe-ecccccccccccCCHHHHHHH
Confidence 889999999999999999877775444 5433211 2345556544433
No 106
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.55 E-value=9e-13 Score=122.21 Aligned_cols=204 Identities=15% Similarity=0.164 Sum_probs=137.4
Q ss_pred CCCCCCCCCCCccCCCCC--C-----CCCCCCchHHHHHHHHH---C---C--------------CcEEEEE-eccCCCC
Q 020304 110 GDTCTRGCRFCAVKTSRN--P-----APPDPMEPENTAKAIAS---W---G--------------VDYIVLT-SVDRDDI 161 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~~--~-----~~~~~~ei~~~~~~~~~---~---G--------------~~~i~l~-gg~~~~l 161 (328)
..||+.+|.||..+.... . ...++++|.+.+..... . | .+++.|+ +|+| .+
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEP-lL 143 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEP-TL 143 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccc-cc
Confidence 556999999998765332 1 12345555544433211 1 2 3468887 4554 44
Q ss_pred CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHH
Q 020304 162 PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVL 238 (328)
Q Consensus 162 ~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i 238 (328)
. +++.++++.+++. ++.+.+.||+.. ++.++.| +++++.+.+++++.++ .++.++++ +.+++.+++.+
T Consensus 144 ~----p~l~eli~~~k~~--Gi~~~L~TNG~~--~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L 214 (322)
T PRK13762 144 Y----PYLPELIEEFHKR--GFTTFLVTNGTR--PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETL 214 (322)
T ss_pred h----hhHHHHHHHHHHc--CCCEEEECCCCC--HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 3 5799999999987 677777788753 7888999 7889999999998854 66555422 46899999999
Q ss_pred HHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC---cccCCCCCHHHHHHHHHHHHh-c
Q 020304 239 KHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH---LTVKEYVTPEKFDFWKAYGES-I 314 (328)
Q Consensus 239 ~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~---~~~~~~~~~~~~~~l~~~~~~-~ 314 (328)
+.+++ .|..+...+.+=.|.+..+..+.++++++++++.+.+.+|. |.... +.....++.+++.++.+...+ .
T Consensus 215 ~~l~~--~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~-~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~ 291 (322)
T PRK13762 215 ELLPS--KKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFVEVKAYM-HVGYSRNRLTRDNMPSHEEVREFAKELAEYT 291 (322)
T ss_pred HHHHh--CCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEEECCe-ECCCccccccccCCcCHHHHHHHHHHHHHhc
Confidence 99999 78776555444235666666689999999999999886665 31111 112234567777777666555 4
Q ss_pred CCceeeeccccc
Q 020304 315 GFRYVASGPLVS 326 (328)
Q Consensus 315 G~~~~~~g~~~~ 326 (328)
|+....-++..|
T Consensus 292 ~~~i~~~~~~s~ 303 (322)
T PRK13762 292 GYEILDESEPSR 303 (322)
T ss_pred CCeEEecCCCce
Confidence 777555566655
No 107
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-13 Score=121.36 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=150.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC-CCCCCCch-HHHHHHHH-H-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEP-ENTAKAIA-S-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei-~~~~~~~~-~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
...+...+.|||++|.||..+..... .....+++ .+++.+.. . .+...|.++||++. +- .+.+.++++..|+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~-~q---~e~~~~~~~~ake 110 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPT-LQ---AEFALDLLRAAKE 110 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcch-hh---HHHHHHHHHHHHH
Confidence 35666779999999999988754421 22223332 23333332 2 36789999999973 32 6999999999999
Q ss_pred hCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--EE
Q 020304 179 QKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IM 255 (328)
Q Consensus 179 ~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~i 255 (328)
. |+.+.+-||++. +++.++.|.+. +|.+.+++...++ .++.+. +.+.+.+++.++.+.+ .|+.+... ++
T Consensus 111 ~--Gl~~~l~TnG~~-~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~--~g~~ve~r~lvi 182 (260)
T COG1180 111 R--GLHVALDTNGFL-PPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLAD--LGVHVEIRTLVI 182 (260)
T ss_pred C--CCcEEEEcCCCC-CHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHc--CCCeEEEEEEEE
Confidence 8 788888888875 88888999988 9999999988754 577776 5566999999999999 88875544 44
Q ss_pred EEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC-cccCCCCCHHHHHHHHHHHHhcCCceeeeccc
Q 020304 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFWKAYGESIGFRYVASGPL 324 (328)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~-~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~ 324 (328)
-|+.+..+++.+.++++.+++.. +++ .+++-.|.+ +...+.-..+.++.+.+.+.+.|.++++.|+.
T Consensus 183 Pg~~d~~e~i~~i~~~i~~~~~~-~p~-~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~~~v~~~~~ 250 (260)
T COG1180 183 PGYNDDEEEIRELAEFIADLGPE-IPI-HLLRFHPDYKLKDLPPTPVETLEEAKKLAKEEGLKFVYIGNV 250 (260)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCc-ccE-EEeccccCccccccCCCcHHHHHHhHhhhHHHHHHhHhhhcc
Confidence 46678999999999999986543 333 233113333 22333445677888999999999999988753
No 108
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.55 E-value=9.1e-13 Score=125.11 Aligned_cols=174 Identities=10% Similarity=0.122 Sum_probs=124.6
Q ss_pred EeCCCCCCCCCCCccCCCCCC------CCCCCCchHHHHHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 108 LLGDTCTRGCRFCAVKTSRNP------APPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 108 ~~t~gC~~~C~FC~~~~~~~~------~~~~~~ei~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
.+|..||.+|.||........ ..++.+.+.+.++.+.+. +...|.|+||+|. +.. .+.+.++++.+++.
T Consensus 10 ~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPl-l~~--~~~~~~~~~~~~~~ 86 (370)
T PRK13758 10 PASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPT-LAG--LEFFEELMELQRKH 86 (370)
T ss_pred cCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccc-cCC--hHHHHHHHHHHHHh
Confidence 346899999999987642211 123334455566655443 3457899999974 321 35677888888876
Q ss_pred C-CCc--EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhc---CCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 180 K-PDI--MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR---DPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 180 ~-~~~--~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~---~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
. .++ .+.+.||+..++++.++.|++.|+ .+.++++..++.+...| +...+++.++++++.+++ .|+.+...
T Consensus 87 ~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~--~~~~~~i~ 163 (370)
T PRK13758 87 NYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK--YKVEFNIL 163 (370)
T ss_pred ccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHH--hCCCceEE
Confidence 3 233 356788998889999999999986 88888888766654444 135689999999999999 88877766
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 254 IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
+++. ..+.+++.+.++++.++|++.+.+.+.+.|
T Consensus 164 ~~v~-~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p 197 (370)
T PRK13758 164 CVVT-SNTARHVNKIYKYFKEKDFKFLQFINCLDP 197 (370)
T ss_pred EEec-cccccCHHHHHHHHHHcCCCeEeeeeccCc
Confidence 6665 567788999999999999998766433435
No 109
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.53 E-value=4.4e-12 Score=119.18 Aligned_cols=204 Identities=15% Similarity=0.149 Sum_probs=138.3
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHH--------HHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAI--------ASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKA 175 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~--------~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ 175 (328)
..+..+.|||.+|.||..........++..|+.+.+..+ ...+++.|+|+| |+| .+. .+.+.++++.
T Consensus 123 ~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP-Lln---~d~v~~~i~~ 198 (368)
T PRK14456 123 ACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP-LLN---TDNVFEAVLT 198 (368)
T ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc-ccC---HHHHHHHHHH
Confidence 344579999999999987643222335667776554322 235788999999 886 332 4678999998
Q ss_pred HHHhCCC--c---EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC---CCCCHHHHHHHHHH-HHHh
Q 020304 176 MKKQKPD--I---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD---PRAGYEQSLEVLKH-AKLS 244 (328)
Q Consensus 176 ik~~~~~--~---~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~---~~~~~~~~l~~i~~-~~~~ 244 (328)
+++...+ + .+.+.|++ +. +.++.|.++|++ .+.+++.+.++ .++.+.+ .++++++++++++. +.+
T Consensus 199 l~~~~~~~~is~r~ItisT~G--l~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~- 274 (368)
T PRK14456 199 LSTRKYRFSISQRKITISTVG--IT-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK- 274 (368)
T ss_pred HhccccccCcCcCeeEEECCC--Ch-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh-
Confidence 8864211 2 34455555 24 457999999996 89999999754 6654431 25689999999984 566
Q ss_pred CCCCeEEE--eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 245 KKGLITKS--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 245 ~~Gi~v~~--~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
.|..+.. -+|-|+.++++++.+++++++++.+. +.+-+|. |.+.. .....+++.++.++++..+.|+...-.
T Consensus 275 -~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~-VnlIpyn-~~~~~--~~~~ps~e~i~~F~~~L~~~Gi~vtvR 348 (368)
T PRK14456 275 -TGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCK-INLIDYN-SIVNI--KFEPVCSSTRERFRDRLLDAGLQVTVR 348 (368)
T ss_pred -cCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCe-eEEeeec-cCCCC--CCCCCCHHHHHHHHHHHHHCCCcEEee
Confidence 6766554 34557789999999999999998542 2222232 32111 123456788999999999999987653
No 110
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.52 E-value=3.1e-13 Score=120.89 Aligned_cols=173 Identities=18% Similarity=0.259 Sum_probs=131.4
Q ss_pred cccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCC-CCC-----CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC
Q 020304 91 GECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRN-PAP-----PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG 164 (328)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~-~~~-----~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~ 164 (328)
+.|..|. ..++.+|+.||.+|.||..+..+. ... +.....+++++++..++...+-+|||+| .+.
T Consensus 22 ~~C~~G~------KlVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdP-l~~-- 92 (353)
T COG2108 22 RLCVLGG------KLVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDP-LLE-- 92 (353)
T ss_pred HHHhcCC------ceEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCCh-HHH--
Confidence 3466663 447888999999999999986442 211 1122346677777777888888999996 232
Q ss_pred cHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
.++..++++.+|+.+ .+++++.+|++...++|.+++|.+||+|.+.+++.. +.....+.++++++.|++
T Consensus 93 -ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~---------~~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 93 -IERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPR---------PGSKSSEKYIENLKIAKK 162 (353)
T ss_pred -HHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCC---------ccccccHHHHHHHHHHHH
Confidence 689999999999886 568999999998889999999999999999987640 113356889999999999
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
.|+.++.-+ -.+-.-++.+.+.+.++.+.+.++++++.+
T Consensus 163 --~g~dvG~Ei-Paipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 163 --YGMDVGVEI-PAIPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred --hCccceeec-CCCcchHHHHHHHHHHHHhcccceeeeeee
Confidence 998866544 234233567889999999999999998543
No 111
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.50 E-value=2.5e-12 Score=112.84 Aligned_cols=177 Identities=18% Similarity=0.284 Sum_probs=120.8
Q ss_pred EeCCCCCC--------CCCCCccCCCCCCC--CC-C-CCchHHHHHHHHH-CC-CcE-EEEEeccCCCCCCCcHHHHHHH
Q 020304 108 LLGDTCTR--------GCRFCAVKTSRNPA--PP-D-PMEPENTAKAIAS-WG-VDY-IVLTSVDRDDIPDGGSGHFART 172 (328)
Q Consensus 108 ~~t~gC~~--------~C~FC~~~~~~~~~--~~-~-~~ei~~~~~~~~~-~G-~~~-i~l~gg~~~~l~~~~~~~l~~l 172 (328)
-.+-.||+ .|+||+...+.... .. + .+++.+.++.+.+ .+ .++ ++|+..+.+ +. +.+.+.+.
T Consensus 29 d~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yA--pvevLre~ 105 (312)
T COG1242 29 DGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNT-YA--PVEVLREM 105 (312)
T ss_pred cCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccc-cC--cHHHHHHH
Confidence 34556664 69999876432111 11 1 1234555554432 33 333 477776653 44 36788888
Q ss_pred HHHHHHhCCC-cEEEEEeCCCCCCHHHHHHHHHcCCc---EEeechhhHHH-H-HhhhcCCCCCHHHHHHHHHHHHHhCC
Q 020304 173 VKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLD---VFAHNIETVKR-L-QRIVRDPRAGYEQSLEVLKHAKLSKK 246 (328)
Q Consensus 173 i~~ik~~~~~-~~i~~~t~~~~~~~e~l~~L~~aG~~---~i~~~~et~~~-~-~~~~~~~~~~~~~~l~~i~~~~~~~~ 246 (328)
.+..-+. ++ +.+++.|-..-+.+++++.|.+..-. .+-+|++|.+. . .++.| +|+++.+.++++.+++ .
T Consensus 106 ye~aL~~-~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNR--gHd~~~y~dav~r~rk--r 180 (312)
T COG1242 106 YEQALSE-AGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINR--GHDFACYVDAVKRLRK--R 180 (312)
T ss_pred HHHHhCc-CCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhc--ccchHHHHHHHHHHHH--c
Confidence 8776554 34 45555554444588999999988433 12248888865 3 34444 8999999999999999 9
Q ss_pred CCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecc--cCCCCCC
Q 020304 247 GLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQY--LQPTPLH 292 (328)
Q Consensus 247 Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~--l~PTp~~ 292 (328)
||.|++++|+|+ ||+.+++.++++.+..++++-+-+++. +.-|++.
T Consensus 181 gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~ 229 (312)
T COG1242 181 GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPME 229 (312)
T ss_pred CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHH
Confidence 999999999999 999999999999999999998877532 2347764
No 112
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=7e-12 Score=117.48 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=137.4
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH---C------C--CcEEEEEe-ccCCCCCCCcHHHHHHHHH
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---W------G--VDYIVLTS-VDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~---~------G--~~~i~l~g-g~~~~l~~~~~~~l~~li~ 174 (328)
+..+-||+.+|.||+.+...-...++++||.+.+..+.. . | ++.|+|.| |+| +. +.+.+.++++
T Consensus 125 vSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--Ll--N~d~V~~~i~ 200 (373)
T PRK14459 125 ISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LA--NYKRVVAAVR 200 (373)
T ss_pred EEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hh--hHHHHHHHHH
Confidence 457899999999998654322345678888776665432 1 2 66899999 886 32 2588888899
Q ss_pred HHHHh---CCCc---EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHH-H
Q 020304 175 AMKKQ---KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAK-L 243 (328)
Q Consensus 175 ~ik~~---~~~~---~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~-~ 243 (328)
.+++. ..++ ++.+.|.+. ...++.|++.+++ .+.+++.+.++ .++.+.+ ++++.++.+++++... +
T Consensus 201 ~l~~~~~~g~gis~r~ITvST~Gl---~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~ 277 (373)
T PRK14459 201 RITAPAPEGLGISARNVTVSTVGL---VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADA 277 (373)
T ss_pred HHhCcccccCCccCCEEEEECcCc---hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence 88872 1244 565555543 3578889998876 78888888765 6655552 2478999999977654 5
Q ss_pred hCCCCeEEEeE--EEEcCCCHHHHHHHHHHHHhCC--CCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 244 SKKGLITKSSI--MLGLGESDDDLKEAMADLRSID--VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 244 ~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l~~l~--~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.|..+...+ |=|+.+++++..++.++++.++ .-.+.+-+|- |++.. .....+.+.++.++++..+.|+...
T Consensus 278 --~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~~~~--~y~~~~~~~~~~F~~~L~~~gi~~t 352 (373)
T PRK14459 278 --TGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PTPGS--KWTASPPEVEREFVRRLRAAGVPCT 352 (373)
T ss_pred --hCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CCCCC--CCcCCCHHHHHHHHHHHHHCCCeEE
Confidence 677766554 4477999999999999999984 2233433332 43321 1233456778888999999998754
No 113
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=1.2e-11 Score=116.13 Aligned_cols=202 Identities=14% Similarity=0.121 Sum_probs=135.1
Q ss_pred EEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHH----H--CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHH
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA----S--WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~----~--~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~ 178 (328)
.+....||+.+|.||..+.......++++|+.+++.... . .|+..|+++| |+| .+. .+.+.++++.+++
T Consensus 112 ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP-Lln---~~~v~~~l~~l~~ 187 (356)
T PRK14455 112 CVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP-FDN---YDNVMDFLRIIND 187 (356)
T ss_pred EEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc-cCC---HHHHHHHHHHHhc
Confidence 345678999999999887644344567788877665432 1 3578899988 665 332 5889999999986
Q ss_pred hCCCc-----EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCe
Q 020304 179 QKPDI-----MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 179 ~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~ 249 (328)
.. ++ ++.+.|++.. ..+..+.+.++. .+.+++.+.++ .++.+.+ .+++.++++++++.+.+. .|..
T Consensus 188 ~~-g~~~s~r~itvsT~G~~---~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~-~~~~ 262 (356)
T PRK14455 188 DK-GLAIGARHITVSTSGIA---PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEK-TNRR 262 (356)
T ss_pred cc-CcccCCCceEEEecCch---HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCe
Confidence 41 34 5555566532 355667777654 34578888755 5654331 256789999999977541 4455
Q ss_pred EEE--eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 250 TKS--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 250 v~~--~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+.. -+|=|+.++.+++.++.++++.++. .+.+-+|. |++.. .....+++.+..+++++.+.|+...-
T Consensus 263 v~iey~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~~~--ky~~ps~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 263 VTFEYILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVPER--DYVRTPKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCCCC--CCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 554 3444679999999999999999874 34443332 43322 12345678888999999999987653
No 114
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.47 E-value=3.2e-12 Score=122.94 Aligned_cols=177 Identities=10% Similarity=0.103 Sum_probs=126.3
Q ss_pred eEEEEEe-CCCCCCCCCCCccCCCCC-----C-CCCCCCchHHHHHHHHH-CCCcE--EEEEeccCCCCCCCcHHHHHHH
Q 020304 103 TATIMLL-GDTCTRGCRFCAVKTSRN-----P-APPDPMEPENTAKAIAS-WGVDY--IVLTSVDRDDIPDGGSGHFART 172 (328)
Q Consensus 103 ~~~~i~~-t~gC~~~C~FC~~~~~~~-----~-~~~~~~ei~~~~~~~~~-~G~~~--i~l~gg~~~~l~~~~~~~l~~l 172 (328)
....+.. +..||.+|.||....... . ..++.+.+.+.++++.+ .+... +.++||+|. +.. ...+.++
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPl-L~~--~~~~~~~ 89 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETL-MRP--LSFYKKA 89 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccC-CCc--HHHHHHH
Confidence 3444554 579999999998753211 1 23556666777777765 35554 456899864 431 2455666
Q ss_pred HHHHHHh--CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhc---CCCCCHHHHHHHHHHHHHhCCC
Q 020304 173 VKAMKKQ--KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR---DPRAGYEQSLEVLKHAKLSKKG 247 (328)
Q Consensus 173 i~~ik~~--~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~---~~~~~~~~~l~~i~~~~~~~~G 247 (328)
++.+++. ..++.+.+.||+.+++++.++.|+++|+ .+.++++..++.++..| ..+.+|++++++++.+++ .|
T Consensus 90 ~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~--~g 166 (412)
T PRK13745 90 LELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK--HG 166 (412)
T ss_pred HHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH--cC
Confidence 6655432 2346667789998899999999999997 88888888766554444 124689999999999999 99
Q ss_pred CeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 248 LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 248 i~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+.+.+...+. .++.++..+.+++++++|++.+.+.+++
T Consensus 167 i~~~i~~vv~-~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 167 VEWNAMAVVN-DFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred CCEEEEEEEc-CCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 8876655443 7788889999999999999998886555
No 115
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.47 E-value=4.5e-12 Score=118.15 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=120.5
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCCC-CCCchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPP-DPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~~-~~~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
.+.++.+|+||+.+|+||........... ..+++.+.++.+.+ .|+++|.|+||++-.+.+ ..+.++++.+++.
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i- 188 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI- 188 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-
Confidence 46678899999999999987543221111 24566777777764 579999999999744432 4688889888875
Q ss_pred CC---cEEEEEeCCC---CCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe-
Q 020304 181 PD---IMVECLTSDF---RGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS- 253 (328)
Q Consensus 181 ~~---~~i~~~t~~~---~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~- 253 (328)
+. +.+...++.. .++++.++.|+++|+..+.++..... ....++..++++.+++ .|+.+...
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~---------~Ei~~~~~~ai~~L~~--aGi~v~~qt 257 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHC---------NEITEEFAEAMKKLRT--VNVTLLNQS 257 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCCh---------HhCCHHHHHHHHHHHH--cCCEEEeec
Confidence 33 3333323332 36899999999999887766432111 1123678899999999 99985544
Q ss_pred -EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCC
Q 020304 254 -IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPL 291 (328)
Q Consensus 254 -~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~ 291 (328)
++-|..++.+++.++.+.+.++|+....++++ .|+..
T Consensus 258 vLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~-~~~~g 295 (331)
T TIGR00238 258 VLLRGVNDRAQILAKLSIALFKVGIIPYYLHYL-DKVQG 295 (331)
T ss_pred ceECCcCCCHHHHHHHHHHHhhcCeecCeecCc-CCCCC
Confidence 45577888999999999999999987666533 36444
No 116
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.46 E-value=1.6e-11 Score=115.04 Aligned_cols=201 Identities=17% Similarity=0.153 Sum_probs=134.6
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHH---HCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhC--
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA---SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK-- 180 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~---~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~-- 180 (328)
+..+.||+.+|.||..........++.+|+.+.+..+. ..++..|+|+| |+| .+. .+.+.++++.+++..
T Consensus 105 issq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP-Lln---~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 105 ISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP-LLN---YENVIKSIKILNHKKMK 180 (343)
T ss_pred EEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh-hhh---HHHHHHHHHHHhchhcc
Confidence 45679999999999865422122355667765554332 24678999999 886 332 467888888886421
Q ss_pred -CCc-EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEE--
Q 020304 181 -PDI-MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKS-- 252 (328)
Q Consensus 181 -~~~-~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~-- 252 (328)
.+. .+.+.|++ ..+.++.|.+.|++ .+.+++.+.++ .++.+.+ .+.++++++++++...+. .+..+..
T Consensus 181 ~~g~~~itisTnG---~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~-~~~~v~i~y 256 (343)
T PRK14469 181 NIGIRRITISTVG---IPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKK-TGNRVTIEY 256 (343)
T ss_pred cCCCCeEEEECCC---ChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHH-hCCeEEEEE
Confidence 122 55555555 36888999999998 68888888765 5554431 357899999999866541 3544443
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 253 ~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
-+|-|+.++.+|+.+++++++.+++. +.+-+|- |.+. .....+.+++++++++..+.|+....
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~---~~~~ps~e~l~~f~~~l~~~gi~vtv 319 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP---GLEKPSRERIERFKEILLKNGIEAEI 319 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc---cCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34557789999999999999998753 3433332 3221 22345678888899999998986543
No 117
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.45 E-value=7.4e-12 Score=116.13 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=124.8
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCC-CCCCCCchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~-~~~~~~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~- 180 (328)
+..+.+|++|+.+|+||........ .....+++.+.++.+.+ .+++.|+|+||+|-...+ ..+.++++.+....
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPH 173 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCC
Confidence 4566799999999999986543211 12334556666776664 489999999999743332 45777777776531
Q ss_pred -CCcEEEE----EeCCCCCCHHHHHHHHHcCCcEEe-echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 181 -PDIMVEC----LTSDFRGDLRAVETLVHSGLDVFA-HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 181 -~~~~i~~----~t~~~~~~~e~l~~L~~aG~~~i~-~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
..+.+.. ..+ ..+++++++.|+++|+..+. ++++..++++ ++..++++.+++ .|+.+....
T Consensus 174 ~~~iri~tr~~~~~p-~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~--~Gi~v~~qt 240 (321)
T TIGR03821 174 LKRLRIHTRLPVVIP-DRITSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN--AGITLLNQS 240 (321)
T ss_pred CcEEEEecCcceeeH-HHhhHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH--cCCEEEecc
Confidence 1233321 112 24589999999999987764 3555443322 457789999999 999865554
Q ss_pred EE--EcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHH
Q 020304 255 ML--GLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAY 310 (328)
Q Consensus 255 iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~ 310 (328)
.+ |+.++.+++.++.+.+.++|+....++.+ .|++.. ..-.++.++..++.+.
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~-~p~gg~--~~f~v~~~~~~~i~~~ 295 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHLL-DKVQGA--AHFDVDDERARALMAE 295 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccccc-CCCCCc--ccccCCHHHHHHHHHH
Confidence 44 66789999999999999999988777533 476642 1234566555544333
No 118
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=2.6e-11 Score=113.27 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=133.1
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHC------CCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~------G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik 177 (328)
..+..+.||+.+|.||..........++++|+.+.+..+... .++.|+|+| |+| .+. .+.+.+.++.+.
T Consensus 95 ~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP-lln---~~~v~~~i~~l~ 170 (343)
T PRK14468 95 ICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP-LLN---YENVLKAARIML 170 (343)
T ss_pred EEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc-ccC---HHHHHHHHHHhc
Confidence 344578999999999986543223345677887766544332 256899998 775 332 577777777764
Q ss_pred HhCCCc-----EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCC
Q 020304 178 KQKPDI-----MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 178 ~~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
... ++ .+.+.|++ ....++.|.++|++ .+.+++.+.++ .++.+.+ .+.+.++.+++++...+. .+.
T Consensus 171 ~~~-g~~l~~r~itvST~G---~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~-~~~ 245 (343)
T PRK14468 171 HPQ-ALAMSPRRVTLSTVG---IPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAV-TGR 245 (343)
T ss_pred ccc-cccccCceEEEECCC---ChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHh-cCC
Confidence 321 22 34455555 34678889998876 57888888755 5555542 246889999999855441 555
Q ss_pred eEEEe--EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 249 ITKSS--IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 249 ~v~~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+... +|=|+.++.+++.++.++++++.+ .+.+-+|- |.+. ......+.+.++.++++..+.|+...
T Consensus 246 ~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~~--~~~~~ps~e~i~~f~~~L~~~Gi~vt 314 (343)
T PRK14468 246 RVTLEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWEG--SPFQSSPRAQILAFADVLERRGVPVS 314 (343)
T ss_pred eEEEEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCCC--CCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 55544 444778999999999999999864 33332232 3222 23345677888899999888888764
No 119
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.43 E-value=3.3e-11 Score=113.10 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=133.2
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHH----H--CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA----S--WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~----~--~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
+....||+.+|.||+.........++..|+.+.+..+. . .+++.|+|.| |+| .+. .+.+.++++.+++.
T Consensus 109 VSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP-Lln---~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 109 VSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP-LLN---LNEVVKAMEIMNDD 184 (355)
T ss_pred EecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch-hhC---HHHHHHHHHHhhcc
Confidence 34578999999999876532223456677766554332 1 2467899998 775 332 57888888888753
Q ss_pred -CCCc---EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCCeE
Q 020304 180 -KPDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGLIT 250 (328)
Q Consensus 180 -~~~~---~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~-~~~~~~Gi~v 250 (328)
..++ ++.+.|++.. ..++.|.+.+++ .+.+++.+.++ .++.+.+ .++++++.+++++. +++ .|..+
T Consensus 185 ~g~~i~~~~itisT~G~~---~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~--~g~~V 259 (355)
T TIGR00048 185 FGLGISKRRITISTSGVV---PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNK--TGRRV 259 (355)
T ss_pred cccCcCCCeEEEECCCch---HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH--hCCEE
Confidence 2234 5656666632 678888887877 46677777753 5544431 24678999988875 455 66665
Q ss_pred EEe--EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 251 KSS--IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 251 ~~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
... +|-|+.++.+++.++.++++.+++. +.+-+|- |.+.. .....+.++++.++++..+.|+...-
T Consensus 260 tieyvLI~GvNDs~e~a~~La~llk~l~~~-VnLIPyn-p~~~~--~~~~ps~e~i~~f~~~L~~~gi~v~i 327 (355)
T TIGR00048 260 TFEYVLLDGVNDQVEHAEELAELLKGTKCK-VNLIPWN-PFPEA--DYERPSNEQIDRFAKTLMSYGFTVTI 327 (355)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCCCc-eEEEecc-cCCCC--CCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 544 3447789999999999999998753 3332232 43322 22345678888999988889988753
No 120
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.42 E-value=4.5e-11 Score=111.16 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=134.6
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH---CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~---~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
...+..+.||+.+|.||......-.....+.|+.+.+..+.+ ..++.|+|+| |+|. +. .+.+.++++.+++.
T Consensus 98 t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPl-lN---~d~v~~~i~~l~~~ 173 (336)
T PRK14470 98 VVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPF-LN---YDEVLRAAYALCDP 173 (336)
T ss_pred EEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccc-cC---HHHHHHHHHHHhCc
Confidence 445567899999999998875322233456676655554432 3578999999 8863 32 46788888888753
Q ss_pred ----CCCcEEEEEeCCCCCCHHHHHHHHHcCC-cEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 180 ----KPDIMVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 180 ----~~~~~i~~~t~~~~~~~e~l~~L~~aG~-~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
..+..+.+.|++. . ..+++|.+.|. +.+.+++.+.++ .++.+.+. +.+.++.+++++...+ .|-.+.
T Consensus 174 ~~~~~~~~~ItVsTnG~--~-p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~--~~rri~ 248 (336)
T PRK14470 174 AGARIDGRRISISTAGV--V-PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA--LRGRVT 248 (336)
T ss_pred cccccCCCceEEEecCC--h-HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH--hCCCeE
Confidence 1345677777764 3 35556666664 778889888754 55444322 4689999999999988 454433
Q ss_pred --EeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHH--HhcCCcee
Q 020304 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYG--ESIGFRYV 319 (328)
Q Consensus 252 --~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~--~~~G~~~~ 319 (328)
.-+|-|+.++++|+.+..++++.+.+.. .+-+|- |.+. .....+.++++.++++. .+.|+...
T Consensus 249 ieyvLI~GvNDseeda~~La~llk~l~~~v-nlI~~N-~~~~---~~~~p~~~~i~~f~~~l~~~~~g~~~~ 315 (336)
T PRK14470 249 LEYVMISGVNVGEEDAAALGRLLAGIPVRL-NPIAVN-DATG---RYRPPDEDEWNAFRDALARELPGTPVV 315 (336)
T ss_pred EEEEEEecccCCHHHHHHHHHHHhcCCCeE-EEeccC-CCCC---CccCCCHHHHHHHHHHHHHccCCeEEE
Confidence 4456688999999999999999886532 322333 3222 23445677888888888 46777653
No 121
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.42 E-value=4.5e-11 Score=112.11 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=135.6
Q ss_pred EEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHH---HHH-HC--C---CcEEEEEe-ccCCCCCCCcHHHHHHHHHH
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAK---AIA-SW--G---VDYIVLTS-VDRDDIPDGGSGHFARTVKA 175 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~---~~~-~~--G---~~~i~l~g-g~~~~l~~~~~~~l~~li~~ 175 (328)
.+....||+.+|.||..........++++|+.+++. ... .. | ++.|+|+| |+| .+. .+.+.+.++.
T Consensus 105 CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP-Lln---~~~v~~~l~~ 180 (354)
T PRK14460 105 CLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP-LLN---LDEVMRSLRT 180 (354)
T ss_pred EeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc-cCC---HHHHHHHHHH
Confidence 445688999999999765432233467788876663 222 22 3 67889988 665 342 5778888888
Q ss_pred HHHhCCCc-----EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHH-HHhCC
Q 020304 176 MKKQKPDI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHA-KLSKK 246 (328)
Q Consensus 176 ik~~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~-~~~~~ 246 (328)
+++.. ++ ++.+.|++. .+.++.|+++|+..+.+++.+.++ .++.+.+. ....++.+++++.. .+ .
T Consensus 181 l~~~~-Gl~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~--~ 254 (354)
T PRK14460 181 LNNEK-GLNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLK--T 254 (354)
T ss_pred Hhhhh-ccCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHh--c
Confidence 87642 33 465666653 678899999999888888888765 66555322 35788999888754 34 4
Q ss_pred CCeEEE--eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 247 GLITKS--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 247 Gi~v~~--~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
|-.+.. -+|-|+.++++++.+++++++.++.. +.+-+|- |.+. . ..+..++++++.++++..+.|+...
T Consensus 255 ~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~-VnLIpyn-~~~g-~-~y~~p~~e~v~~f~~~l~~~Gi~vt 325 (354)
T PRK14460 255 RERVTFEYLLLGGVNDSLEHARELVRLLSRTKCK-LNLIVYN-PAEG-L-PYSAPTEERILAFEKYLWSKGITAI 325 (354)
T ss_pred CCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCc-EEEEcCC-CCCC-C-CCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 444444 45557799999999999999998753 3333332 3221 1 1245677889999999999898653
No 122
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.39 E-value=1.2e-10 Score=108.04 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=129.7
Q ss_pred EeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH-CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCc--
Q 020304 108 LLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDI-- 183 (328)
Q Consensus 108 ~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~-- 183 (328)
..+-||+.+|.||..........++.+||.+.+..+.. .+++.|+|+| |+| +. +.+.+.+.++.+++.. ++
T Consensus 108 SsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEP--L~--N~d~vi~al~~l~~~~-g~~~ 182 (345)
T PRK14466 108 SSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEP--LD--NLDEVLKALEILTAPY-GYGW 182 (345)
T ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcC--cc--cHHHHHHHHHHHhhcc-ccCc
Confidence 34569999999998665322234677788777776643 3588999999 886 32 2567777777776542 33
Q ss_pred ---EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEE--eEE
Q 020304 184 ---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKS--SIM 255 (328)
Q Consensus 184 ---~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~i 255 (328)
.+.+.|++. .+.. +.+.+.+-..+.+++.+.++ .++.+.+ ++++.++.+++++...+. .|-.+.. -+|
T Consensus 183 s~r~ItVsT~G~--~~~i-~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~-~~rri~~Ey~Li 258 (345)
T PRK14466 183 SPKRITVSTVGL--KKGL-KRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS-KQRRVSFEYIVF 258 (345)
T ss_pred CCceEEEEcCCC--chHH-HHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh-hCCEEEEEEEEe
Confidence 566666662 3333 34333222355667776543 5544442 346789999999986442 3334443 345
Q ss_pred EEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 256 LGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
=|+.++.+|..+++++++.+++ .|.+-+|- |.|.. .....+.+.++++++...+.|+...
T Consensus 259 ~gvND~~e~a~~L~~ll~~~~~-~VNLIp~N-p~~~~--~~~~~s~~~~~~F~~~L~~~gi~~t 318 (345)
T PRK14466 259 KGLNDSLKHAKELVKLLRGIDC-RVNLIRFH-AIPGV--DLEGSDMARMEAFRDYLTSHGVFTT 318 (345)
T ss_pred CCCCCCHHHHHHHHHHHcCCCc-eEEEEecC-CCCCC--CCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 5789999999999999998874 45554443 54432 2345678889999999999998543
No 123
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.39 E-value=6.5e-11 Score=112.43 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=118.5
Q ss_pred CCCchHHHHHHHHH-C--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCCC-CCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIAS-W--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDF-RGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~-~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~-~~~~e~l~~L~~aG 206 (328)
+++++.+++++... . ....+.++||+++... +++.++++.+++. ++++.+ .|++. ..+++.++.|+++|
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~--gi~taI~~TnG~~l~~~e~~~~L~~~g 128 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDL--GLPIHLGYTSGKGFDDPEIAEFLIDNG 128 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhC--CCCEEEeCCCCcccCCHHHHHHHHHcC
Confidence 45566666655433 2 3468899988776554 8999999999987 455555 37764 45899999999999
Q ss_pred CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--EEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 207 ~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
++.+.+++.+.++ .++.+.+ ..+.+.+++.++.+.+ . +.+.+- ++-|+.++++ ..++++++.++++..+.+.
T Consensus 129 ld~v~iSvka~dpe~h~kl~G-~~~a~~ILe~L~~L~e--~-~~v~~~ivlIPGiND~ee-l~~ti~~L~~lg~~~V~L~ 203 (404)
T TIGR03278 129 VREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCE--S-CEVHAASVIIPGVNDGDV-LWKTCADLESWGAKALILM 203 (404)
T ss_pred CCEEEEecccCCHHHHHHHhC-CCCHHHHHHHHHHHHh--c-CCEEEEEEEeCCccCcHH-HHHHHHHHHHCCCCEEEEE
Confidence 9999999999865 6765552 2344999999999988 4 344433 3445555444 4699999999999988886
Q ss_pred cccCCCC-------CC--cccCCCCCHHHHHHH-HHHHHhcCCc
Q 020304 284 QYLQPTP-------LH--LTVKEYVTPEKFDFW-KAYGESIGFR 317 (328)
Q Consensus 284 ~~l~PTp-------~~--~~~~~~~~~~~~~~l-~~~~~~~G~~ 317 (328)
+|- ++. .. +......+.+++..+ +++..+.|++
T Consensus 204 ~y~-~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~ 246 (404)
T TIGR03278 204 RFA-NTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIR 246 (404)
T ss_pred ecc-cccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 563 211 11 011223455666555 7777777755
No 124
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.39 E-value=9.3e-11 Score=109.44 Aligned_cols=200 Identities=14% Similarity=0.189 Sum_probs=133.3
Q ss_pred EEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH---CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCC
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKP 181 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~---~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~ 181 (328)
.+...-||+.+|.||..........++++|+.+++..+.. .++..|+|+| |+| .+. .+.+.+.++.+++. .
T Consensus 104 cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP-lln---~~~v~~~i~~l~~~-~ 178 (345)
T PRK14457 104 CVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP-LLN---IDEVLAAIRCLNQD-L 178 (345)
T ss_pred EEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc-ccC---HHHHHHHHHHHhcc-c
Confidence 3445679999999998765332234677888777665543 3578999999 776 332 57788888888764 2
Q ss_pred Cc---EEEEEeCCCCCCHHHHHHHHHcCC------c-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCC
Q 020304 182 DI---MVECLTSDFRGDLRAVETLVHSGL------D-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKG 247 (328)
Q Consensus 182 ~~---~i~~~t~~~~~~~e~l~~L~~aG~------~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~-~~~~~~G 247 (328)
++ .+.+.|.+ ..+.++.|.+.++ + .+.+++.+.++ .++.+.+ +++..++.+++++. +.+ .|
T Consensus 179 ~i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~--~g 253 (345)
T PRK14457 179 GIGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAI--TG 253 (345)
T ss_pred CCccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHH--hC
Confidence 44 55554544 3456888887762 3 35667766644 5544432 35678888877765 556 56
Q ss_pred CeE--EEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 248 LIT--KSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 248 i~v--~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
-.+ ..-+|-|+.++.|++.++.++++.+++ .+.+-+|- |.+. ......+.++++.++++..+.|+...
T Consensus 254 r~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPyn-p~~~--~~~~~ps~e~i~~f~~~L~~~Gi~vt 323 (345)
T PRK14457 254 RRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPYN-PIDE--VEFQRPSPKRIQAFQRVLEQRGVAVS 323 (345)
T ss_pred CEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecCC-CCCC--CCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 554 444566889999999999999999865 34443332 3222 12345678889999999999998764
No 125
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.38 E-value=7.3e-11 Score=111.84 Aligned_cols=166 Identities=16% Similarity=0.165 Sum_probs=121.9
Q ss_pred eeeEEEEEeCCCCCCCCCCCccCCCCC--CCCCCCCchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 101 IATATIMLLGDTCTRGCRFCAVKTSRN--PAPPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 101 ~~~~~~i~~t~gC~~~C~FC~~~~~~~--~~~~~~~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
+..+..+.+|++|+.+|+||......+ ....+.+++.+.++.+++ .+++.|.|+||++-.+++ +.+..+++.++
T Consensus 106 Yp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L~ 182 (417)
T TIGR03820 106 YPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTELR 182 (417)
T ss_pred cCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHHh
Confidence 335777889999999999997764322 123345677777887776 589999999999855553 56667788888
Q ss_pred HhCCCcE-EEEEeC-----CCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 178 KQKPDIM-VECLTS-----DFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 178 ~~~~~~~-i~~~t~-----~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
+. |++. +.+.|. +..+++++++.|++++...+.++.+..+ ...++..++++.+++ +|+.+.
T Consensus 183 ~I-phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~----------Eit~~a~~Al~~L~~--aGI~l~ 249 (417)
T TIGR03820 183 AI-PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR----------EITASSKKALAKLAD--AGIPLG 249 (417)
T ss_pred hc-CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH----------hChHHHHHHHHHHHH--cCCEEE
Confidence 75 6665 333343 3456899999999998666655544332 235888999999999 999855
Q ss_pred --EeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 252 --SSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 252 --~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.++-|..++.+-+.++.+.+.++|+.--.+
T Consensus 250 nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl 282 (417)
T TIGR03820 250 NQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYL 282 (417)
T ss_pred eeceEECCcCCCHHHHHHHHHHHHHCCCeecee
Confidence 4456688999999999999999999864444
No 126
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.38 E-value=1.3e-10 Score=108.82 Aligned_cols=204 Identities=17% Similarity=0.133 Sum_probs=131.5
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHH-HCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCC
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA-SWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKP 181 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~-~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~ 181 (328)
...+..+.||+.+|.||..........++++|+.+.+..+. ..+++.|+|+| |+| .+ +.+.+.+.++.+++. .
T Consensus 104 t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEP-l~---n~~~vi~~l~~l~~~-~ 178 (349)
T PRK14463 104 TLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEP-LA---NLDNVIPALQILTDP-D 178 (349)
T ss_pred EEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcc-hh---cHHHHHHHHHHhhcc-c
Confidence 34456899999999999765432233456678877666553 35789999998 774 33 256777777777642 1
Q ss_pred Cc-----EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEEE-
Q 020304 182 DI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITKS- 252 (328)
Q Consensus 182 ~~-----~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~v~~- 252 (328)
++ .+.+.|++. .+ .+..|.+..-..+.+++++.++ .++.+. .++++.++.+++++...+. .|-.+..
T Consensus 179 gl~~s~r~itVsTnGl--~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~-~~~~v~ie 254 (349)
T PRK14463 179 GLQFSTRKVTVSTSGL--VP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLP-GRRKITIE 254 (349)
T ss_pred ccCcCCceEEEECCCc--hH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 33 555556653 33 3444544432345578888754 665542 1357889999988776541 3445554
Q ss_pred -eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 253 -SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 253 -~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
-+|-|+.++.+++.++.+++++++. .+.+-+| .|.+. ...+..+.+.++.++++..+.|+...-
T Consensus 255 yvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~~--~~~~~ps~e~i~~f~~~L~~~gi~v~v 319 (349)
T PRK14463 255 YVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHEG--CDFRSPTQEAIDRFHKYLLDKHVTVIT 319 (349)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCCC--CCCCCCCHHHHHHHHHHHHHCCceEEE
Confidence 3444668999999999999999875 3444333 23222 133456778899999999999987643
No 127
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.36 E-value=1.7e-10 Score=107.85 Aligned_cols=202 Identities=17% Similarity=0.183 Sum_probs=136.1
Q ss_pred ceeeEEEEEeCCCCCC-CCCCCccCC------CCCCCC----------CCC-CchHHHHHHHHHCCCc----EEEEEecc
Q 020304 100 GIATATIMLLGDTCTR-GCRFCAVKT------SRNPAP----------PDP-MEPENTAKAIASWGVD----YIVLTSVD 157 (328)
Q Consensus 100 ~~~~~~~i~~t~gC~~-~C~FC~~~~------~~~~~~----------~~~-~ei~~~~~~~~~~G~~----~i~l~gg~ 157 (328)
.+...+++---.+||+ +|.||...- +.+... .+| .+...-++++...|-. ++.|.||+
T Consensus 64 gvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGT 143 (515)
T COG1243 64 GVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGT 143 (515)
T ss_pred cceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEeccc
Confidence 3555666666899998 999998762 111110 111 2445667778877744 66888998
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCC-------------------CcEEEEEe-CCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 158 RDDIPDGGSGHFARTVKAMKKQKP-------------------DIMVECLT-SDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 158 ~~~l~~~~~~~l~~li~~ik~~~~-------------------~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
.+.++ .++=...++.+++... -+.+.+.| |+.. +++.++.|.+.|++++-+|++|+
T Consensus 144 Fta~~---~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~-~ee~ld~mlkyG~TrVELGVQSi 219 (515)
T COG1243 144 FTALS---LEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYI-DEEHLDQMLKYGVTRVELGVQSI 219 (515)
T ss_pred ccCCC---HHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCcccc-CHHHHHHHHhcCCcEEEEeeeeH
Confidence 77665 2332233332222111 12233333 5664 89999999999999999999998
Q ss_pred HH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCC---CCEEeeecccC--CCC
Q 020304 218 KR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID---VDILTLGQYLQ--PTP 290 (328)
Q Consensus 218 ~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~---~~~i~i~~~l~--PTp 290 (328)
.+ +.+... .+|+.++..++-+.+++ +|++++.++|.|+ |-+.|-=.++++.+-+.+ +|.+-+++.+. .|+
T Consensus 220 yd~Vl~~~~-RGHtvedv~~a~rLlKd--~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~ 296 (515)
T COG1243 220 YDDVLERTK-RGHTVEDVVEATRLLKD--AGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTE 296 (515)
T ss_pred HHHHHHHhc-CCccHHHHHHHHHHHHh--cCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCch
Confidence 54 543333 48999999999999999 9999999999999 888777667777777776 99999987652 377
Q ss_pred CCcc----cCCCCCHHHHHHHH
Q 020304 291 LHLT----VKEYVTPEKFDFWK 308 (328)
Q Consensus 291 ~~~~----~~~~~~~~~~~~l~ 308 (328)
++.. .....+.++.-++-
T Consensus 297 Ly~mwk~G~Ykpy~~EEaVeli 318 (515)
T COG1243 297 LYEMWKRGLYKPYTTEEAVELI 318 (515)
T ss_pred HHHHHHcCCCCCCCHHHHHHHH
Confidence 7521 22344555554443
No 128
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.34 E-value=9.1e-11 Score=110.62 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=128.4
Q ss_pred CCC-CCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHH-CCCcE--EEEEeccCCCCCCCcHHHHHHHHHHHHHh-CCCc
Q 020304 110 GDT-CTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIAS-WGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KPDI 183 (328)
Q Consensus 110 t~g-C~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~-~G~~~--i~l~gg~~~~l~~~~~~~l~~li~~ik~~-~~~~ 183 (328)
|.. ||.+|.||.+....... .++.+..++.++.+.+ .+.+. |.+.||+|.... ..+.+.+..+.++ ..+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~----~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG----LDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch----HHHHHHHHHHHHHHhcCC
Confidence 445 99999999887643322 3555556677776655 44455 677899975433 3444444443332 2244
Q ss_pred EE--EEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhc---CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 184 MV--ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR---DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 184 ~i--~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~---~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
++ ...||+.+++++.++.|++.|+ .|.++++..+++++..| ..+.+++.+++.++.+++ .++.+.+.+.+.
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~--~~v~~~~~~vv~- 165 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA--HGVDFNTLTVVN- 165 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHH--cCCcEEEEEEEc-
Confidence 44 4788999999999999999999 88888877666543333 345689999999999999 898877666642
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC-cccCCCCCHHHHHHH
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH-LTVKEYVTPEKFDFW 307 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~-~~~~~~~~~~~~~~l 307 (328)
.++.++..+.++++.+.|...+.+.+.+.+.+.. ......++++++.++
T Consensus 166 ~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~f 215 (378)
T COG0641 166 RQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQF 215 (378)
T ss_pred hhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHH
Confidence 7888999999999999997777664343221111 012335556555443
No 129
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.34 E-value=7.2e-12 Score=114.01 Aligned_cols=185 Identities=20% Similarity=0.286 Sum_probs=122.6
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCCCCC-CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPPD-PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~~~~-~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~ 181 (328)
.--++.+..||-.-|+||-....++....+ .+++++.++..-+.|+.+|++++.+...|.+.--..+..++..+.+..|
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iP 266 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP 266 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcc
Confidence 455667899999999999776556555554 4678899999999999999999877665653222456666777666655
Q ss_pred Cc-EEE-EEeC-CCCC-C-HHHHHHHHHcCCcEEee------chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 182 DI-MVE-CLTS-DFRG-D-LRAVETLVHSGLDVFAH------NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 182 ~~-~i~-~~t~-~~~~-~-~e~l~~L~~aG~~~i~~------~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
.- ... -.|+ .+++ . +|....|+--.+-.+.| +...+-+|.+.+. ..+++ .++..+.+.-+|+.+
T Consensus 267 e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc--~~dfk---~Vvd~LterVPgi~I 341 (547)
T KOG4355|consen 267 ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYC--NFDFK---IVVDFLTERVPGITI 341 (547)
T ss_pred hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHh--hhhHH---HHHHHHHhhCCCcEE
Confidence 31 111 1222 1111 1 12222222222222333 2333445665443 33444 455555566699999
Q ss_pred EEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCC
Q 020304 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLH 292 (328)
Q Consensus 251 ~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~ 292 (328)
.+++|.|+ |||+|||.+++.+++++.+..+.+++|. +| ||..
T Consensus 342 ATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAA 386 (547)
T KOG4355|consen 342 ATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAA 386 (547)
T ss_pred eeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHH
Confidence 99999999 9999999999999999999999999887 34 8875
No 130
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.34 E-value=3.4e-10 Score=105.75 Aligned_cols=202 Identities=14% Similarity=0.136 Sum_probs=131.7
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH----CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~----~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~ 178 (328)
...+..+.||+.+|.||+.+...-...++.+|+.+.+..+.. .++..|+|.| |+| .+ +.+.+.++++.+++
T Consensus 100 t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP-L~---N~d~v~~~l~~l~~ 175 (348)
T PRK14467 100 TLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP-LA---NYENVRKAVQIMTS 175 (348)
T ss_pred EEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh-hc---CHHHHHHHHHHHcC
Confidence 445567999999999998865332245677788766654433 3578999999 775 23 26888899998876
Q ss_pred hCCCc-----EEEEEeCCCCCCHHHHHHHHHcC----CcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHHH-HhC
Q 020304 179 QKPDI-----MVECLTSDFRGDLRAVETLVHSG----LDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAK-LSK 245 (328)
Q Consensus 179 ~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG----~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~~-~~~ 245 (328)
.. ++ ++.+.|++.. ..++.+...+ + .+.+++.+.++ .++.+.+. .+..++.+++++... +
T Consensus 176 ~~-gl~~~~r~itvsT~G~~---~~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~-- 248 (348)
T PRK14467 176 PW-GLDLSKRRITISTSGII---HQIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLP-- 248 (348)
T ss_pred hh-ccCcCCCcEEEECCCCh---hHHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHh--
Confidence 31 44 5666666543 3344444432 3 34467777644 56555422 346777777776543 4
Q ss_pred CCCeEEEe--EEEEcCCCHHHHHHHHHHHHhCC-CCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 246 KGLITKSS--IMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 246 ~Gi~v~~~--~ivGlgEt~e~~~~~l~~l~~l~-~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.|-.+..- +|-|+.++.+++.++.++++.++ +..+.+-+|- |.+.. ..+..+.+++++++++..+.|+...
T Consensus 249 ~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPyn-p~~~~--~~~~ps~e~i~~f~~~L~~~gi~v~ 322 (348)
T PRK14467 249 PGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFN-PDPEL--PYERPELERVYKFQKILWDNGISTF 322 (348)
T ss_pred cCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 55555443 45577899999999999999985 3344443332 44432 3355677888999999999898764
No 131
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.30 E-value=8.9e-11 Score=109.41 Aligned_cols=189 Identities=20% Similarity=0.317 Sum_probs=132.5
Q ss_pred eEEEEEeCCCCCCC----CCCCccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEe--------ccC--CCCCCCcHHH
Q 020304 103 TATIMLLGDTCTRG----CRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTS--------VDR--DDIPDGGSGH 168 (328)
Q Consensus 103 ~~~~i~~t~gC~~~----C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~g--------g~~--~~l~~~~~~~ 168 (328)
.-.=+++.+||+.. |+||.-+....+..++++.+.++++.+.+.|++++.+.- ++. ...+..+++.
T Consensus 183 vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPea 262 (560)
T COG1031 183 VICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEA 262 (560)
T ss_pred EEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHH
Confidence 34445789999976 999988765223345678899999999999999875521 110 0023335789
Q ss_pred HHHHHHHHHHhCCCcEEE-E-EeCC-CCC-----CHHHHHHHHHcC--CcEEeechhhHHH-HHhhhcCCCCCHHHHHHH
Q 020304 169 FARTVKAMKKQKPDIMVE-C-LTSD-FRG-----DLRAVETLVHSG--LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEV 237 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~-~-~t~~-~~~-----~~e~l~~L~~aG--~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~ 237 (328)
+.++.+.|++..|++... . +.|. .+. +.+.++.+.+.| =|...+++||+|+ ..+... -..+.|+.+++
T Consensus 263 lekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~A 341 (560)
T COG1031 263 LEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEA 341 (560)
T ss_pred HHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHH
Confidence 999999999988887652 2 1121 111 457788888887 5667889999987 444433 36789999999
Q ss_pred HHHHHHhCC-----CC---eEEEeEEEEc-CCCHHHHHHHHHHHHhC---C--CCEEeeecccC-C-CCCC
Q 020304 238 LKHAKLSKK-----GL---ITKSSIMLGL-GESDDDLKEAMADLRSI---D--VDILTLGQYLQ-P-TPLH 292 (328)
Q Consensus 238 i~~~~~~~~-----Gi---~v~~~~ivGl-gEt~e~~~~~l~~l~~l---~--~~~i~i~~~l~-P-Tp~~ 292 (328)
++.+.++.. |+ -...++++|+ |||.|.+.-..++|+++ | +..|++-|.+. | ||+.
T Consensus 342 V~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~ 412 (560)
T COG1031 342 VEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMW 412 (560)
T ss_pred HHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchh
Confidence 999877432 33 2568899999 99999999999999875 2 33455544331 5 8875
No 132
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.29 E-value=3.1e-10 Score=102.33 Aligned_cols=169 Identities=18% Similarity=0.302 Sum_probs=120.1
Q ss_pred CC-CCCCCCCCCccCCCCCCCC-----CCCCchHHHHHHHHHC------CCcEEEEEe-ccCCCCCCCcHHHHHHHHHHH
Q 020304 110 GD-TCTRGCRFCAVKTSRNPAP-----PDPMEPENTAKAIASW------GVDYIVLTS-VDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 110 t~-gC~~~C~FC~~~~~~~~~~-----~~~~ei~~~~~~~~~~------G~~~i~l~g-g~~~~l~~~~~~~l~~li~~i 176 (328)
+- .|+++|.||.......... ..++.|.+..+.+... ..+++.|++ |+|+.+ .++.++++.+
T Consensus 30 ~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-----~~L~elI~~~ 104 (296)
T COG0731 30 SKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-----PNLGELIEEI 104 (296)
T ss_pred chhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-----cCHHHHHHHH
Confidence 44 8999999998844321111 1233456666666554 467888876 565444 6799999999
Q ss_pred HHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-H-HhhhcC-CCCCHHHHHHHHHHHHHhCCCC-eEEE
Q 020304 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-L-QRIVRD-PRAGYEQSLEVLKHAKLSKKGL-ITKS 252 (328)
Q Consensus 177 k~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~-~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi-~v~~ 252 (328)
++.. ++..-+.||+.+ +++++.|.. .|-+.+++++.++ . +++.+| .+..++++++.++.+++...|- -+-+
T Consensus 105 k~~g-~~~tflvTNgsl--pdv~~~L~~--~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~ 179 (296)
T COG0731 105 KKRG-KKTTFLVTNGSL--PDVLEELKL--PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRT 179 (296)
T ss_pred HhcC-CceEEEEeCCCh--HHHHHHhcc--CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEE
Confidence 9984 256666777754 888888884 5788888888765 3 455553 2368999999999999831232 2445
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 253 SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 253 ~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
.++=|+..+.|++.+.+++++.++++.+-+..+++|
T Consensus 180 tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rp 215 (296)
T COG0731 180 TLVKGINDDEEELEEYAELLERINPDFVELKTYMRP 215 (296)
T ss_pred EEeccccCChHHHHHHHHHHHhcCCCeEEEecCccC
Confidence 555577888888999999999999999999877766
No 133
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.28 E-value=3.8e-10 Score=103.90 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=110.7
Q ss_pred CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcC
Q 020304 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD 226 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~ 226 (328)
...|.|+||+|. +. .+.+.++++.+++. ++.+.+.||+.. ..+.++.+.+. ++.+.+++.+.++ .++.++
T Consensus 126 ~~~V~~sGGEPl-l~---~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~d~~~isl~~~~~~~~~~~~- 196 (295)
T TIGR02494 126 GGGVTLSGGEPL-LQ---PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-VDLFLFDIKHLDDERHKEVT- 196 (295)
T ss_pred CCcEEeeCcchh-ch---HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-CCEEEEeeccCChHHHHHHh-
Confidence 457899999963 43 35567999999987 567777788775 55666666653 7888888887644 666666
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHHHhCC--CCEEeeecccCCCCC----------C
Q 020304 227 PRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADLRSID--VDILTLGQYLQPTPL----------H 292 (328)
Q Consensus 227 ~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l~~l~--~~~i~i~~~l~PTp~----------~ 292 (328)
+.+++..++.++.+.+ .|..+...+ +.|+.++.+++.++++++++++ +..+.+.+|. |.+. .
T Consensus 197 -g~~~~~vl~~i~~l~~--~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~-~~g~~~~~~~~~~~~ 272 (295)
T TIGR02494 197 -GVDNEPILENLEALAA--AGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH-RLGENKYRQLGREYP 272 (295)
T ss_pred -CCChHHHHHHHHHHHh--CCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC-chhHHHHHHhCCCCc
Confidence 4578999999999999 887755554 4466788899999999999998 6677765454 4211 1
Q ss_pred cccCCCCCHHHHHHHHHHHHhcC
Q 020304 293 LTVKEYVTPEKFDFWKAYGESIG 315 (328)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~G 315 (328)
+...+..+.++++.+++++.+.|
T Consensus 273 ~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 273 DSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcC
Confidence 11223467788888887777655
No 134
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.27 E-value=4.4e-10 Score=98.14 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=133.7
Q ss_pred CCCCchHHHHHHHHH---CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 131 PDPMEPENTAKAIAS---WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~---~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.+++++.+.++.-.. .+-..|.|+||+|. +- .+.+.++++.+|+. ++++.+-|++.. +.+.++.|... +
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-lq---~~fl~~l~~~~k~~--gi~~~leTnG~~-~~~~~~~l~~~-~ 90 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-MQ---AEFATRFLQRLRLW--GVSCAIETAGDA-PASKLLPLAKL-C 90 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-cC---HHHHHHHHHHHHHc--CCCEEEECCCCC-CHHHHHHHHHh-c
Confidence 566776665554322 24458999999974 32 57889999999987 677777788765 78888888776 8
Q ss_pred cEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 208 DVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 208 ~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
|.+.+++...++ .++.++ +.+.+.++++++.+.+ .|.. +.+.+|-|+.++++++.++++++++++++.+.+.+
T Consensus 91 D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~--~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVS--EGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred CEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHh--CCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 999999888754 677776 6789999999999999 7765 56667778889999999999999999888666655
Q ss_pred ccCCC----------CCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 285 YLQPT----------PLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 285 ~l~PT----------p~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|- |. +..+...+..+.+.++.+++++.+.|++..-
T Consensus 167 yh-~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 167 FH-QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CC-ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 53 31 1112233556788899999999999998753
No 135
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.26 E-value=8.1e-10 Score=103.18 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=129.7
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH-C--CCcEEE-EEeccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-W--GVDYIV-LTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~--G~~~i~-l~gg~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
..+....||+.+|.||+.........++.+|+.+++..... . .+..++ +.||+| .+. .+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEP-Lln---~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEP-LDN---YENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchh-hcC---HHHHHHHHHHHhccc
Confidence 34567999999999998754322334677888777765543 2 345655 566665 332 688999999998631
Q ss_pred CCc-----EEEEEeCCCCCCHHHHHHHHHcCC-cEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCCeE
Q 020304 181 PDI-----MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGLIT 250 (328)
Q Consensus 181 ~~~-----~i~~~t~~~~~~~e~l~~L~~aG~-~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~-~~~~~~Gi~v 250 (328)
++ ++.+.|++. .+. +..|.+.++ ..+.+++...++ .++.+.+ .....++.+++++. +.+ .|-.+
T Consensus 179 -gi~~~~r~itvsTsG~--~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~--~~~rv 252 (342)
T PRK14454 179 -GLNIGQRHITLSTCGI--VPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINK--TNRRI 252 (342)
T ss_pred -ccCcCCCceEEECcCC--hhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHH--hCCEE
Confidence 44 555656653 233 567777642 236677776654 5555542 23456677766654 445 56554
Q ss_pred EE--eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 251 KS--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 251 ~~--~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
.. -+|-|+.++.+++.++.++++.+.+ .+.+-+|- |++.. ..+..++++++.++++..+.|+...-.
T Consensus 253 ~iey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPyn-~~~~~--~~~~ps~e~l~~f~~~l~~~gi~v~iR 321 (342)
T PRK14454 253 TFEYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPVN-EVKEN--GFKKSSKEKIKKFKNILKKNGIETTIR 321 (342)
T ss_pred EEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEecC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 43 4566889999999999999998743 33332221 32221 234567888999999999999876543
No 136
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.25 E-value=9.7e-10 Score=102.72 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=132.3
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHC------CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~------G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~ 178 (328)
..+....||+.+|.||+.+...-...++++|+.+++..+... ....|++.|+..|.+ +.+.+.++++.+++
T Consensus 112 ~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~---N~d~v~~~l~~l~~ 188 (356)
T PRK14462 112 VCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLD---NLDNVSKAIKIFSE 188 (356)
T ss_pred EeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccccc---CHHHHHHHHHHhcC
Confidence 345568899999999977643223456778887766644331 245788874443433 26889999999987
Q ss_pred hCCCc-----EEEEEeCCCCCCHHHHHHHHHcCC-cEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHH-HHHhCCCC
Q 020304 179 QKPDI-----MVECLTSDFRGDLRAVETLVHSGL-DVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKH-AKLSKKGL 248 (328)
Q Consensus 179 ~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG~-~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~-~~~~~~Gi 248 (328)
.. ++ ++.+.|.+.. +.++.|.+.++ -.+.+++.+.++ .++.+.| .++..++++++++. +.+ .|-
T Consensus 189 ~~-Gl~~~~r~itVsTsG~~---~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~--~~~ 262 (356)
T PRK14462 189 ND-GLAISPRRQTISTSGLA---SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPID--QRK 262 (356)
T ss_pred cc-CCCcCCCceEEECCCCh---HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHH--hCC
Confidence 41 44 4455565543 56777887765 335556666644 5655542 23456889998874 445 565
Q ss_pred eEEE--eEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 249 ITKS--SIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 249 ~v~~--~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+.. -+|-|+.++.|+..++.++++.++. .|.+-+|- |.+.. ..+..+++.++.++++..+.|+...
T Consensus 263 ~i~ieyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-~~~~~--~~~~ps~e~i~~f~~~l~~~gi~vt 331 (356)
T PRK14462 263 RVMFEYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILFN-PHEGS--KFERPSLEDMIKFQDYLNSKGLLCT 331 (356)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeCC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 5444 4566889999999999999999864 44443332 33322 2345678889999999998888754
No 137
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.25 E-value=9.2e-10 Score=102.89 Aligned_cols=205 Identities=13% Similarity=0.089 Sum_probs=126.4
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHHCC--CcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHh-C
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG--VDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQ-K 180 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G--~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~-~ 180 (328)
..+...-||+.+|.||+.........++.+||.+.+..+...| ++.|+|+| |+| .+. ..+.+.++.+++. .
T Consensus 102 ~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEP-Lln----~~v~~~i~~l~~~~~ 176 (347)
T PRK14453 102 FCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEA-LAN----PELFDALKILTDPNL 176 (347)
T ss_pred EEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCc-cCC----HHHHHHHHHHhcccc
Confidence 3355688999999999887543234567788888777665554 78999999 886 232 3577788877763 1
Q ss_pred CCcE---EEEEeCCCCCCHHHHHHHHHcC-CcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCe--EE
Q 020304 181 PDIM---VECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLI--TK 251 (328)
Q Consensus 181 ~~~~---i~~~t~~~~~~~e~l~~L~~aG-~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~--v~ 251 (328)
.++. +.+.|++.. . .++.|.+.. -..+.+++.+.++ .++.+.+ .....++.+++++...+. .|.. +.
T Consensus 177 ~~~~~r~itVsT~G~~-~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~-~~~~V~ir 252 (347)
T PRK14453 177 FGLSQRRITISTIGII-P--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRH-TGRKVYIA 252 (347)
T ss_pred cCCCCCcEEEECCCCc-h--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHh-cCCcEEEE
Confidence 2333 555566543 2 233333332 1233346655532 4433321 245667777766654321 4554 44
Q ss_pred EeEEEEcCCCHHHHHHHHHHHHhCC----CCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 252 SSIMLGLGESDDDLKEAMADLRSID----VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 252 ~~~ivGlgEt~e~~~~~l~~l~~l~----~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.-+|-|+.++.+++.+++++++.++ +..+.+-+|- |++......+..+.+++..++++..+.|+...
T Consensus 253 y~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vt 323 (347)
T PRK14453 253 YIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGISVT 323 (347)
T ss_pred EEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 4556688999999999999999884 3344443332 43322112345678889999999999998753
No 138
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.20 E-value=5.2e-09 Score=98.52 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=125.4
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH----------CCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----------WGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~----------~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
+...-||+.+|.||..+...-...++.+||.+.+..+.. .+++.|++.|+..|.+. .+.+.+.++.+
T Consensus 107 vSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~N---~d~v~~al~~l 183 (372)
T PRK11194 107 VSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLN---LNNVVPAMEIM 183 (372)
T ss_pred EecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCccccC---HHHHHHHHHHH
Confidence 344699999999998765322334667787666554332 12678888774434332 57788888888
Q ss_pred HHhC-CCc---EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH-HHHhhhcCC--CCCHHHHHHHHHHHHHhCCC--
Q 020304 177 KKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDP--RAGYEQSLEVLKHAKLSKKG-- 247 (328)
Q Consensus 177 k~~~-~~~---~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~-~~~~~~~~~--~~~~~~~l~~i~~~~~~~~G-- 247 (328)
++.. -++ ++.+.|++. . ..++.|.+..--.+.+++.+.+ +.++.+.|. ++..++.+++++...+. .|
T Consensus 184 ~~~~g~~i~~r~itVsTsG~--~-~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~-~~~~ 259 (372)
T PRK11194 184 LDDFGFGLSKRRVTLSTSGV--V-PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEK-SNAN 259 (372)
T ss_pred hhhhccCcCCCeEEEECCCC--c-hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHh-cccC
Confidence 7542 123 566666653 2 3456666553223444565543 355544422 34567777776554331 32
Q ss_pred ---CeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 248 ---LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 248 ---i~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+.+..-+|-|+.++.+++.++.++++.++. .+.+-+|- |.+.. ..+..+.+.++.++++..+.|+...-
T Consensus 260 ~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPYN-~~~~~--~~~~ps~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 260 QGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWN-PFPGA--PYGRSSNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecCC-CCCCC--CCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 445556677889999999999999999864 44443331 33321 23456678889999999999987654
No 139
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.15 E-value=1.3e-08 Score=94.68 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=130.4
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH---CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhC
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS---WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~---~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~ 180 (328)
..+...-||+.+|+||+.....-...++..||.+.+-.+.+ ..+..|+|.| |+| +. +.+.+.+.++.+++..
T Consensus 107 ~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~--N~d~V~~~~~~l~~~~ 182 (342)
T PRK14465 107 ICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MH--NYFNVIRAASILHDPD 182 (342)
T ss_pred EEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hh--hHHHHHHHHHHHhChh
Confidence 44556889999999998865332234566777666555443 3577999998 776 32 2577888888777641
Q ss_pred -C---CcEEEEEeCCCCCCHHHHHHHHH-cCCcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHH-HhCCCCeEE
Q 020304 181 -P---DIMVECLTSDFRGDLRAVETLVH-SGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAK-LSKKGLITK 251 (328)
Q Consensus 181 -~---~~~i~~~t~~~~~~~e~l~~L~~-aG~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~-~~~~Gi~v~ 251 (328)
. .-++.+.|++. .+. +..|.+ ..--.+.+++.+.+. .+..+-| +++..++.+++++... + .|-.+.
T Consensus 183 ~~~~~~r~itvST~G~--~~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~--~~r~v~ 257 (342)
T PRK14465 183 AFNLGAKRITISTSGV--VNG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRE--LKRRIT 257 (342)
T ss_pred hhcCCCCeEEEeCCCc--hHH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHH--cCCEEE
Confidence 1 22566656653 244 444443 333467777776643 5544421 3578899999999654 5 566655
Q ss_pred Ee--EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 252 SS--IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 252 ~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.- +|-|+.++.|++.+..++++.+++. +.+-+|- | + + ...+..+.++++.++++..+.|+...
T Consensus 258 ieyvLI~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN-~-~-~-~~~~~ps~e~i~~F~~~L~~~Gi~v~ 322 (342)
T PRK14465 258 FEYVMIPGVNMGRENANKLVKIARSLDCK-INVIPLN-T-E-F-FGWRRPTDDEVAEFIMLLEPAGVPIL 322 (342)
T ss_pred EEEEEECCccCCHHHHHHHHHHHhhCCCc-EEEEccC-C-C-C-CCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 33 4457799999999999999998743 3332332 2 2 2 23455678889999999999888754
No 140
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.11 E-value=8.3e-09 Score=95.90 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=125.8
Q ss_pred EEEEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH-CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhC--
Q 020304 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK-- 180 (328)
Q Consensus 105 ~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~-- 180 (328)
..+....||+.+|.||......-....+++|+.+.+..+.+ ..++.|+|.| |+|... .+.+.+.++.+.+..
T Consensus 98 ~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N----~d~vl~ai~~l~~~~~i 173 (344)
T PRK14464 98 LCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHN----LDNVLEAIDLLGTEGGI 173 (344)
T ss_pred EEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCC----HHHHHHHHHHhhchhcC
Confidence 33467999999999998764322233567788777776655 4588999999 886322 466777766665431
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEEe--E
Q 020304 181 PDIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKSS--I 254 (328)
Q Consensus 181 ~~~~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~ 254 (328)
+.-.+.+.|.+ ....+++|.+.++. .+.+++.+.++ .++.+-+ ++++.++.+++++...+. .|-.+..- +
T Consensus 174 ~~r~itiST~G---~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~-~grri~~EyvL 249 (344)
T PRK14464 174 GHKNLVFSTVG---DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARA-TGYPIQYQWTL 249 (344)
T ss_pred CCceEEEeccc---CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHH-HCCEEEEEEEE
Confidence 12233332222 45667777775433 23345555433 4433321 356899999998877553 46554433 3
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 255 ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+=|+.++.++..++.++++.+.+. +.+-+| .|.+.. .....+.+...++.+...+.|+...
T Consensus 250 l~GVNDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v~g~--~~~rp~~~~i~~f~~~L~~~gi~~t 310 (344)
T PRK14464 250 LEGVNDSDEEMDGIVRLLKGKYAV-MNLIPY-NSVDGD--AYRRPSGERIVAMARYLHRRGVLTK 310 (344)
T ss_pred eCCCCCCHHHHHHHHHHHhccccc-cceecC-CccCCC--CccCCCHHHHHHHHHHHHHCCceEE
Confidence 337799999999999999877543 222222 233321 2334567788888898888888654
No 141
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.06 E-value=7.1e-09 Score=92.38 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=91.4
Q ss_pred ceeeEEEEEeCCCCCCCCCCCccCCCCC-CC-----CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHH
Q 020304 100 GIATATIMLLGDTCTRGCRFCAVKTSRN-PA-----PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTV 173 (328)
Q Consensus 100 ~~~~~~~i~~t~gC~~~C~FC~~~~~~~-~~-----~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li 173 (328)
.+-..++..-+.|||.+|.||....... .. ..+.+++.+.++.+...|.+.|.||||+|. +. +.+.+++
T Consensus 19 ~~G~~~~FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPl-l~----~~l~~li 93 (238)
T TIGR03365 19 VIGQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPA-LQ----KPLGELI 93 (238)
T ss_pred ccCCeEEEEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchh-hh----HhHHHHH
Confidence 3446777777999999999998765211 11 134456666666665566889999999973 32 5789999
Q ss_pred HHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 174 KAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 174 ~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+.+++. ++.+.+.||+...+ + .+.+ ++.+.+++...+. . ....++...++++.+++ |..+...
T Consensus 94 ~~l~~~--g~~v~leTNGtl~~-~---~l~~--~d~v~vs~K~~~s---g---~~~~~~~~~~~ik~l~~---~~~~~vK 156 (238)
T TIGR03365 94 DLGKAK--GYRFALETQGSVWQ-D---WFRD--LDDLTLSPKPPSS---G---METDWQALDDCIERLDD---GPQTSLK 156 (238)
T ss_pred HHHHHC--CCCEEEECCCCCcH-H---HHhh--CCEEEEeCCCCCC---C---CCCcHHHHHHHHHHhhh---cCceEEE
Confidence 999987 67777778886533 3 2443 5577777654332 1 12357777888887765 4667777
Q ss_pred EEEE
Q 020304 254 IMLG 257 (328)
Q Consensus 254 ~ivG 257 (328)
++++
T Consensus 157 ~Vv~ 160 (238)
T TIGR03365 157 VVVF 160 (238)
T ss_pred EEEC
Confidence 7776
No 142
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.05 E-value=5.2e-09 Score=92.66 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=130.7
Q ss_pred eCCCCCCCCCCCccCCCC---CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEE
Q 020304 109 LGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (328)
Q Consensus 109 ~t~gC~~~C~FC~~~~~~---~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i 185 (328)
.=.||+++|.||...-.. .....++++..++++++.+.|++.+-+.||+|+.. ..++.+.++.+... +.+
T Consensus 124 FFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~----lp~Ile~l~~~~~~---iPv 196 (335)
T COG1313 124 FFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPH----LPFILEALRYASEN---IPV 196 (335)
T ss_pred EecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCc----hHHHHHHHHHHhcC---CCE
Confidence 357999999999765321 12345677888888899999999999999997432 47777777776654 566
Q ss_pred EEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHH
Q 020304 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDD 264 (328)
Q Consensus 186 ~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~ 264 (328)
..++|.+. ++|.++.|... +|-+.-+..=.+. .-.+..+.+.=|+-..+++..+.+...|+-+..-++-|+-| .-
T Consensus 197 vwNSnmY~-s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghle--cC 272 (335)
T COG1313 197 VWNSNMYM-SEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLE--CC 272 (335)
T ss_pred EEecCCcc-CHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchh--hc
Confidence 67777765 99999999755 6655543332222 21222212334666677777777633356666666666622 11
Q ss_pred HHHHHHHHHhCCCCEEeeeccc---CCCCCCc---ccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 265 LKEAMADLRSIDVDILTLGQYL---QPTPLHL---TVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 265 ~~~~l~~l~~l~~~~i~i~~~l---~PTp~~~---~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
-...++++.+.-.+.+.++ .+ +|+-..+ .....++.+++++..++|++.|++....
T Consensus 273 TkpI~~wiae~~g~~~~vN-iM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~~ 334 (335)
T COG1313 273 TKPILRWIAENLGNDVRVN-IMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNILV 334 (335)
T ss_pred cHHHHHHHHHhCCCCeeEE-ehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceeec
Confidence 3456778877655444442 22 3632221 3456788999999999999999987543
No 143
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.04 E-value=9e-09 Score=92.43 Aligned_cols=198 Identities=16% Similarity=0.225 Sum_probs=127.2
Q ss_pred eEEEEEeC--CCCCCCCCCCccCCCCCC---CC----CCCC--chHHHHHHHHH--CCCcEEEEEeccCCCCCCCcHHHH
Q 020304 103 TATIMLLG--DTCTRGCRFCAVKTSRNP---AP----PDPM--EPENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHF 169 (328)
Q Consensus 103 ~~~~i~~t--~gC~~~C~FC~~~~~~~~---~~----~~~~--ei~~~~~~~~~--~G~~~i~l~gg~~~~l~~~~~~~l 169 (328)
+++++..+ .+|..+|.||.+.++... .. .... .+.+..+.+.. ..++.+.++-...+.. ..++
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~----~~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRA----LNDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccccc----cchh
Confidence 55666655 999999999999874321 11 1111 12333333333 2356777765443323 2456
Q ss_pred HHHHHHHH-HhCCCcEEE-EEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhh-c--CCCCCHHHHHHHHHHHHH
Q 020304 170 ARTVKAMK-KQKPDIMVE-CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIV-R--DPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 170 ~~li~~ik-~~~~~~~i~-~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~-~--~~~~~~~~~l~~i~~~~~ 243 (328)
..+++.+. .....+.++ |.+... ..+.+...+++|.+.+.+..+..+. +++.+ + +..|+||+.++.+..+.+
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~--~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS--LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc--chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 66677666 332234443 222221 2788999999999999987776654 44333 2 234889999999999998
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCC-CCcccCCCCCHHHHHHHH
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP-LHLTVKEYVTPEKFDFWK 308 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp-~~~~~~~~~~~~~~~~l~ 308 (328)
.+..-.+.+++|+|+||+++++.+++..+.+.|.. ++++.|- |-. ..|......+.+.+.+.+
T Consensus 183 ~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~-v~Lfaf~-P~~gt~me~r~~~pve~Yrk~q 246 (339)
T COG2516 183 AFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGI-VSLFAFT-PLKGTQMENRKPPPVERYRKIQ 246 (339)
T ss_pred HhccCCcceeEEeccCCchHHHHHHHHHHHhcCce-EEEEEec-ccccccccCCCCCcHHHHHHHH
Confidence 87767799999999999999999999999999875 4555554 611 123345555555555443
No 144
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.81 E-value=8.5e-07 Score=82.82 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=124.0
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH-----------------CCCcEEEEEeccCCCCCCCcHHHH
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-----------------WGVDYIVLTSVDRDDIPDGGSGHF 169 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-----------------~G~~~i~l~gg~~~~l~~~~~~~l 169 (328)
+...-||+.+|.||+.....-...+++.||.+.+..+.+ ..++.|+|.|-..|.. +.+.+
T Consensus 111 vSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~---NydnV 187 (371)
T PRK14461 111 VSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFA---NYDRW 187 (371)
T ss_pred EEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchh---hHHHH
Confidence 446789999999998766443455778888766654432 1267888877433422 24666
Q ss_pred HHHHHHHHHhC-CCc---EEEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHH-HHHhhhcC--CCCCHHHHHHHHHHH
Q 020304 170 ARTVKAMKKQK-PDI---MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVK-RLQRIVRD--PRAGYEQSLEVLKHA 241 (328)
Q Consensus 170 ~~li~~ik~~~-~~~---~i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~-~~~~~~~~--~~~~~~~~l~~i~~~ 241 (328)
.+.++.+.+.. -++ ++.+.|.+ -...+++|.+-++. .+.+++-+.+ +.++.+-| .++..++.+++++.-
T Consensus 188 ~~ai~il~d~~g~~is~R~ITVST~G---ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 188 WQAVERLHDPQGFNLGARSMTVSTVG---LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHhcCccccCcCCCceEEEeec---chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 66666665431 122 34444444 23566777776532 3555555543 34433322 367899999999876
Q ss_pred HHhCCCCeEEEe--EEEEcCCCHHHHHHHHHHHHhCCCC---EEeeeccc--CCCCCCcccCCCCCHHHHHHHHHHHHhc
Q 020304 242 KLSKKGLITKSS--IMLGLGESDDDLKEAMADLRSIDVD---ILTLGQYL--QPTPLHLTVKEYVTPEKFDFWKAYGESI 314 (328)
Q Consensus 242 ~~~~~Gi~v~~~--~ivGlgEt~e~~~~~l~~l~~l~~~---~i~i~~~l--~PTp~~~~~~~~~~~~~~~~l~~~~~~~ 314 (328)
.+. .|-.+..- +|=|..++.++..++.++++.++.. .+.+ +.+ .|++.. .....+.+.++.++++..+.
T Consensus 265 ~~~-t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V-NLIp~Np~~~~--~~~~ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 265 IAK-TRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV-NLIPWNPVPGT--PLGRSERERVTTFQRILTDY 340 (371)
T ss_pred HHh-hCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE-EEecCCCCCCC--CCCCCCHHHHHHHHHHHHHC
Confidence 431 45444433 4447799999999999999987211 1233 233 243332 22345678888999999999
Q ss_pred CCcee
Q 020304 315 GFRYV 319 (328)
Q Consensus 315 G~~~~ 319 (328)
|+...
T Consensus 341 gi~vt 345 (371)
T PRK14461 341 GIPCT 345 (371)
T ss_pred CceEE
Confidence 98754
No 145
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.79 E-value=4.9e-07 Score=82.77 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=111.1
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCCCCC-----CCCCc-hHHHHH-HHHHCCCcEEEE-EeccCCCCCCCc--HHHHHHHH
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRNPAP-----PDPME-PENTAK-AIASWGVDYIVL-TSVDRDDIPDGG--SGHFARTV 173 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~~~~-----~~~~e-i~~~~~-~~~~~G~~~i~l-~gg~~~~l~~~~--~~~l~~li 173 (328)
.-.++.-.||.+.|.||......+... ...++ +.+.++ ++.+.+.+...+ .|...|.|...+ ..-...++
T Consensus 30 ~y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 30 DYTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred ceecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHH
Confidence 444677899999999998875432221 12333 444444 344345553322 333333354211 12222333
Q ss_pred HHHHHhCCCcEEEEEeCCC--CCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 174 KAMKKQKPDIMVECLTSDF--RGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 174 ~~ik~~~~~~~i~~~t~~~--~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
+.+.+. +..+.+.|=.. .-|-+.+..++.-+.-.+.+++.+.++ +.+.+-+..-+.++++++++.+.+ +|+++
T Consensus 110 ei~~~~--~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e--aGi~~ 185 (297)
T COG1533 110 EILLKY--GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE--AGIPV 185 (297)
T ss_pred HHHHHc--CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH--CCCeE
Confidence 333343 45555555222 125677777778877788888888764 666666566789999999999999 99987
Q ss_pred EEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 251 KSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 251 ~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
...+--=+ +.|++|+.+.+..+.+.|+..+..
T Consensus 186 ~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 186 GLFVAPIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred EEEEecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 65542222 778899999999999999988666
No 146
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.79 E-value=4.9e-07 Score=81.51 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=114.5
Q ss_pred eEEEEEeCCCCCC----CCCCCccCCCCCCCCCCCCchHHHHHHHHH-CC---Cc-EE-EEEeccCCCCCCC--cHHHHH
Q 020304 103 TATIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WG---VD-YI-VLTSVDRDDIPDG--GSGHFA 170 (328)
Q Consensus 103 ~~~~i~~t~gC~~----~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~G---~~-~i-~l~gg~~~~l~~~--~~~~l~ 170 (328)
.-+++.-|+||.. .|.+|++.........+.+++.+..+++.. .. -. -+ .||+|-. +.+. ..+.-.
T Consensus 47 ~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSF--LD~~EVP~e~R~ 124 (358)
T COG1244 47 SLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSF--LDPEEVPREARR 124 (358)
T ss_pred eEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEccccc--CChhhCCHHHHH
Confidence 3444455999983 499999987533444555666555554432 22 22 24 5677653 2211 124555
Q ss_pred HHHHHHHHhCCCc-EEEEEeCCCCCCHHHHHHHHHc--C-CcEEeechhhHHH-HH-hhhcCCCCCHHHHHHHHHHHHHh
Q 020304 171 RTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHS--G-LDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 171 ~li~~ik~~~~~~-~i~~~t~~~~~~~e~l~~L~~a--G-~~~i~~~~et~~~-~~-~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
.+++.|.+.. ++ .+.+-+-...+++|.++.+.+. | .-.+.+|+||.++ ++ .-+. ++.++++++++++.+++
T Consensus 125 ~Il~~is~~~-~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~ir~- 201 (358)
T COG1244 125 YILERISEND-NVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEIIRN- 201 (358)
T ss_pred HHHHHHhhcc-ceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHHHH-
Confidence 6677777652 32 3444444445699999999998 6 4568899999965 55 3333 58999999999999999
Q ss_pred CCCCeEEEeEEEEc-----CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 245 KKGLITKSSIMLGL-----GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 245 ~~Gi~v~~~~ivGl-----gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.|+.+.+.+++=. .|..+|+..++. ..+-+.+.+++.
T Consensus 202 -~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 202 -YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred -cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 9999999998765 344555556655 455578888885
No 147
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.78 E-value=6e-07 Score=82.35 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=116.0
Q ss_pred eeeEEEEEeCCCCCCCCCCCccCCCCCCC--CCCCCchHHHHHHHHHC-CCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 101 IATATIMLLGDTCTRGCRFCAVKTSRNPA--PPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 101 ~~~~~~i~~t~gC~~~C~FC~~~~~~~~~--~~~~~ei~~~~~~~~~~-G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
+..+.++..|++|+..|.||......+.. ....+++...++.+++. -+++|.|+||++-.+++ ..+..+++.|+
T Consensus 109 Y~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L~ 185 (369)
T COG1509 109 YPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRLR 185 (369)
T ss_pred cCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHHh
Confidence 55688889999999999999776543322 23556677777777664 47899999999866664 78888889888
Q ss_pred HhCCCcEEEEEeC------CCCCCHHHHHHHHHcCCcEEee-chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 178 KQKPDIMVECLTS------DFRGDLRAVETLVHSGLDVFAH-NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 178 ~~~~~~~i~~~t~------~~~~~~e~l~~L~~aG~~~i~~-~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
+. |.+.+..+.+ ...+++++.+.|++.+...+.+ .++..++ =..+..++++.+++ +|+.+
T Consensus 186 ~I-pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~--aGv~l 252 (369)
T COG1509 186 AI-PHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRD--AGVPL 252 (369)
T ss_pred cC-CceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHH--cCcee
Confidence 86 5655543322 1224889999998865332221 2211111 12456788889999 99984
Q ss_pred E--EeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 251 K--SSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 251 ~--~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
. +-++-|..++.+-+.++++.+..+|+.--.+
T Consensus 253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl 286 (369)
T COG1509 253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYL 286 (369)
T ss_pred ecchheecccCCCHHHHHHHHHHHHHcCCcceEE
Confidence 4 3356688999999999999999999764334
No 148
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.67 E-value=2.4e-07 Score=76.16 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=93.1
Q ss_pred CCCCCCCCCCCccCCCCCC-----CCCCCCchHHHHHH-HHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 020304 110 GDTCTRGCRFCAVKTSRNP-----APPDPMEPENTAKA-IASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~~~-----~~~~~~ei~~~~~~-~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~ 183 (328)
+-||+..|.||.....+.+ .-+.|+++.+.+.+ .++.|.+.+.++|++| .+. .+++.++|+.+.+ -
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~l~---~EHvlevIeLl~~----~ 119 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-ILG---REHVLEVIELLVN----N 119 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-ccc---HHHHHHHHHhccC----c
Confidence 6799999999977432211 12456666444433 3678999999999886 454 5999999998743 3
Q ss_pred EEEEEeCCCCC--CHHHHHHHHHcCCcEEee-----chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Q 020304 184 MVECLTSDFRG--DLRAVETLVHSGLDVFAH-----NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 184 ~i~~~t~~~~~--~~e~l~~L~~aG~~~i~~-----~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
++...||+.++ |+...+.|...---.+.+ ..|++.++... ...-+...+++++.+++ .|+.+..-++.
T Consensus 120 tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~a---sp~~F~~QL~aLr~L~~--~g~rf~pA~~~ 194 (228)
T COG5014 120 TFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGA---SPEYFRYQLKALRHLHG--KGHRFWPAVVY 194 (228)
T ss_pred eEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcC---ChHHHHHHHHHHHHHHh--cCceeeehhhh
Confidence 45556777655 899999998753223334 44444443321 12337888999999999 99988888888
Q ss_pred Ec
Q 020304 257 GL 258 (328)
Q Consensus 257 Gl 258 (328)
++
T Consensus 195 ~f 196 (228)
T COG5014 195 DF 196 (228)
T ss_pred cc
Confidence 77
No 149
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.63 E-value=1.2e-06 Score=77.95 Aligned_cols=205 Identities=16% Similarity=0.219 Sum_probs=124.3
Q ss_pred eCCCCCCCCCCCccCCCCC-C-CCCCCCchHHHHHHHHHCC-CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh--CCC-
Q 020304 109 LGDTCTRGCRFCAVKTSRN-P-APPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPD- 182 (328)
Q Consensus 109 ~t~gC~~~C~FC~~~~~~~-~-~~~~~~ei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~--~~~- 182 (328)
.||.|-++|.||....+.. + .+.+++|+.+.--.+.+.. +...++.+|-.. -+|...+...++++.++-. +.|
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~-~~DyTmE~mi~var~LRle~~f~GY 138 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIK-NPDYTMEEMIEVARILRLEHKFRGY 138 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecccccc-CcchHHHHHHHHHHHHhhccccCcE
Confidence 5999999999998765432 2 4568888877666555443 456677666421 2333367777777777643 222
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhC-------------CCC
Q 020304 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSK-------------KGL 248 (328)
Q Consensus 183 ~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~-------------~Gi 248 (328)
++..+ .|+ .+++.++++-.. +|++++|+|.... -.+... +..++.++++.+.+++... +-+
T Consensus 139 IHlK~-IPg--as~~li~eagly-adRvSiNIElp~~~~lk~la-p~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 139 IHLKI-IPG--ASPDLIKEAGLY-ADRVSINIELPTDDGLKLLA-PEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred EEEEe-cCC--CCHHHHHHHhhh-hheeEEeEecCCcchhhhhC-CCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 33333 233 267766655444 8999999998744 223343 3566788888777765411 111
Q ss_pred ---eEEEeEEEEc-CCCHHHHHHHHHHH-HhCCCCEEeeecccCC---CCCCcccC-CCCCHHHHHHHHHHHHhcCCcee
Q 020304 249 ---ITKSSIMLGL-GESDDDLKEAMADL-RSIDVDILTLGQYLQP---TPLHLTVK-EYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 249 ---~v~~~~ivGl-gEt~e~~~~~l~~l-~~l~~~~i~i~~~l~P---Tp~~~~~~-~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
--++.+|+|- |||++++......+ ...+...+.++.|. | +|+..... +.+....+-+.-=+.+.-||...
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~-Pv~~s~~lp~~~pplmRehRLYQADwLlrfYgF~~~ 292 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS-PVPSSPLLPDDKPPLMREHRLYQADWLLRFYGFSAD 292 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc-ccCCCCCCcccCCchhHHHHHHHHHHHHHHhCCCHH
Confidence 1357799999 99999999887777 45678888876665 5 44421111 22223333333334556677654
Q ss_pred e
Q 020304 320 A 320 (328)
Q Consensus 320 ~ 320 (328)
+
T Consensus 293 E 293 (404)
T COG4277 293 E 293 (404)
T ss_pred H
Confidence 4
No 150
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.61 E-value=5.4e-08 Score=85.10 Aligned_cols=172 Identities=19% Similarity=0.249 Sum_probs=117.6
Q ss_pred EEEEEeCCCCCCCCCCCccCCCCC--CC--CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 104 ATIMLLGDTCTRGCRFCAVKTSRN--PA--PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 104 ~~~i~~t~gC~~~C~FC~~~~~~~--~~--~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
+.-+..|..|+.+|.||-...... +. -+...++...+..+...|++.+-++||++. .. .++.+++..+.+.
T Consensus 12 yLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggept-Ir----~di~~i~~g~~~l 86 (323)
T KOG2876|consen 12 YLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPL-IR----QDIVPIVAGLSSL 86 (323)
T ss_pred hhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCc-cc----ccccchhhhhhcc
Confidence 333456999999999998776552 11 134567888899999999999999999963 32 3444555555443
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEE
Q 020304 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIML 256 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~--~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~iv 256 (328)
++++-.-.++....+..++-.+.++|++.++++++++.+ +-...+ +.++..++..++.+.+ .|.. +.++..+
T Consensus 87 -~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r--r~g~v~V~~~iq~a~~--lgy~pvkvn~v~ 161 (323)
T KOG2876|consen 87 -PGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR--RKGFVKVWASIQLAIE--LGYNPVKVNCVV 161 (323)
T ss_pred -cchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh--hccHHHHHHHHhHHhh--hCCCCcceeeEE
Confidence 444332233444457788999999999999999999865 334444 6789999999999987 7764 4555444
Q ss_pred EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 257 GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
--|.+.+++.+...+-+...+|...+ .|+
T Consensus 162 ~k~~n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 162 MKGLNEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred EeccCCCcccceeeecCCCCcceEEE-Eec
Confidence 12445556666666556666666555 465
No 151
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.56 E-value=7.6e-08 Score=78.26 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=49.5
Q ss_pred eCCCCCCCCCCCccCCCCCCCC---CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEE
Q 020304 109 LGDTCTRGCRFCAVKTSRNPAP---PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (328)
Q Consensus 109 ~t~gC~~~C~FC~~~~~~~~~~---~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i 185 (328)
.+++||.+|.||.......... .+.+.+.+.++.+...+...|.++||+|. +. ...+.+.++++.+++..+ ..+
T Consensus 11 ~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPl-l~-~~~~~l~~i~~~~k~~~~-~~~ 87 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPL-LH-ENYDELLEILKYIKEKFP-KKI 87 (139)
T ss_dssp EEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGG-GH-HSHHHHHHHHHHHHHTT--SEE
T ss_pred EcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCee-ee-ccHhHHHHHHHHHHHhCC-CCe
Confidence 3888999999997765432111 22233455666666788999999999963 40 014899999999999865 345
Q ss_pred EEEeCCCC
Q 020304 186 ECLTSDFR 193 (328)
Q Consensus 186 ~~~t~~~~ 193 (328)
.+.+++..
T Consensus 88 ~~~tng~~ 95 (139)
T PF13353_consen 88 IILTNGYT 95 (139)
T ss_dssp EEEETT--
T ss_pred EEEECCCc
Confidence 56677765
No 152
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.54 E-value=5.5e-08 Score=77.03 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=46.7
Q ss_pred EeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHHCCC--cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC
Q 020304 108 LLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (328)
Q Consensus 108 ~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~ 182 (328)
..|.+||.+|.||........ ...+.+++.+.++.+...+. ..|.|+||+|..+. +.+.+.++++.+++..|+
T Consensus 3 ~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~--~~~~l~~~i~~~~~~~~~ 80 (119)
T PF13394_consen 3 VRTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYL--NPEDLIELIEYLKERGPE 80 (119)
T ss_dssp ---S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGST--THHHHHHHHCTSTT----
T ss_pred CccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcccc--CHHHHHHHHHHHHhhCCC
Confidence 358999999999997543222 22344566777777777776 47999999973223 257899999999988777
Q ss_pred cEEEEEeCCCC
Q 020304 183 IMVECLTSDFR 193 (328)
Q Consensus 183 ~~i~~~t~~~~ 193 (328)
..+.+.|++..
T Consensus 81 ~~i~i~TNg~~ 91 (119)
T PF13394_consen 81 IKIRIETNGTL 91 (119)
T ss_dssp -EEEEEE-STT
T ss_pred ceEEEEeCCee
Confidence 88888888765
No 153
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.50 E-value=9.3e-06 Score=73.34 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.++..+.++.+.+.|+..|-++++.++... ...+...++++.+++..++..+.++... ..+.++.++++|++.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~i 91 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDEV 91 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCEE
Confidence 46677889999999999999999887754111 1124567888888887666777555543 2789999999999999
Q ss_pred eechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC--CCHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG--ESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg--Et~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+...+.+... +..++....++..++.++.+++ .|+.+..+++.-.+ .+.+++.+.++.+.++|++.+.+
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE--AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 88665554311 2112123468899999999999 99998888876667 99999999999999999998876
No 154
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.47 E-value=3.9e-06 Score=78.47 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HH-hhhcCCCCCHHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHA 241 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~-~~~~~~~~~~~~~l~~i~~~ 241 (328)
..++.+.++..+..+++ +.+...+..+.-+.+..+.+.++|++.+++++-|.++ ++ ++++ ....++.++.+++.
T Consensus 93 ~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~--n~~A~~~le~L~~f 170 (414)
T COG1625 93 YPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK--NPNAEQLLELLRRF 170 (414)
T ss_pred CcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc--CCcHHHHHHHHHHH
Confidence 36788899988887633 4554333233335778888999999999998888765 65 5555 56788899999999
Q ss_pred HHhCCCCeEEEeEEEEcCCC-HHHHHHHHHHHHhCCCCEEeeecccCC---CCCCcccCCCCCHHHHHHHHHHHH----h
Q 020304 242 KLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKFDFWKAYGE----S 313 (328)
Q Consensus 242 ~~~~~Gi~v~~~~ivGlgEt-~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~~~l~~~~~----~ 313 (328)
.+ .++.+.+.+++=.|-+ -+++.+|++.|.++|+..+.++. ..| |..........+++++++++++.+ +
T Consensus 171 ~~--~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E 247 (414)
T COG1625 171 AE--RCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRE 247 (414)
T ss_pred HH--hhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99 9999999988866766 88999999999999999887754 336 444333456777888877766654 5
Q ss_pred cC-Cce
Q 020304 314 IG-FRY 318 (328)
Q Consensus 314 ~G-~~~ 318 (328)
+| |+.
T Consensus 248 ~~~~~V 253 (414)
T COG1625 248 LGSIRV 253 (414)
T ss_pred cCceEE
Confidence 66 443
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.30 E-value=9.2e-06 Score=66.79 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
..+++....|||.+|.||..+..... ...+.+++.+.++... ..+..|.|+||+ .. .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE--l~----~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE--WN----REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh--cC----HHHHHHHHHHHHHC
Confidence 35566667899999999988754321 2344555555555543 236789999999 23 47899999999987
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 180 KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++.+.+.|+ +. .++..+.+.+. +|.+..+.
T Consensus 88 --Gl~i~l~Tg-~~-~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 88 --GLKTCLYTG-LE-PKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred --CCCEEEECC-CC-CHHHHHHHHHh-CCEEEECh
Confidence 566666665 32 34455555443 67666554
No 156
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.26 E-value=1.1e-05 Score=66.91 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCccCCCCC---CCCCCCCchHHHHHHHHHCC-CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEE
Q 020304 110 GDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~~---~~~~~~~ei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i 185 (328)
..|||.+|.||..+.... ....+.+++.++++++.+.+ +..|.|+||+|. + ..+.+.+.++++.+++..+ +..
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPl-l-q~~~~~l~~ll~~~k~~~~-~~~ 98 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPL-Y-PRNVEELIELVKKIKAEFP-EKD 98 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhC-C-CCCHHHHHHHHHHHHHhCC-CCC
Confidence 478999999998875432 23355556777777777765 668999999973 3 2235889999999998642 332
Q ss_pred EEEeCCCCCCHHHH
Q 020304 186 ECLTSDFRGDLRAV 199 (328)
Q Consensus 186 ~~~t~~~~~~~e~l 199 (328)
.+.++++. .++.+
T Consensus 99 ~~~~tG~~-~~~~~ 111 (154)
T TIGR02491 99 IWLWTGYT-WEEIL 111 (154)
T ss_pred EEEeeCcc-HHHHh
Confidence 23355553 33443
No 157
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.17 E-value=0.00027 Score=65.39 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=113.8
Q ss_pred EEeCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH-CC------CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 107 MLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WG------VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 107 i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~-~G------~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
+...-||+..|+||+.....-...++..||.+.+..+.+ .| +..|+|.|-..|.+. .+.....++.+...
T Consensus 105 VSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N---~dnV~~a~~i~~~~ 181 (349)
T COG0820 105 VSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLN---LDNVVKALEIINDD 181 (349)
T ss_pred EecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhh---HHHHHHHHHhhcCc
Confidence 345789999999999876443345677788776665542 22 456788774434332 57777777776643
Q ss_pred C-CCcE---EEEEeCCCCCCHHHHHHHHHcCCc-EEeechhhHHH-HHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 180 K-PDIM---VECLTSDFRGDLRAVETLVHSGLD-VFAHNIETVKR-LQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 180 ~-~~~~---i~~~t~~~~~~~e~l~~L~~aG~~-~i~~~~et~~~-~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
. .++. +.+.|++ + . ..+..|.+..++ .+.+++-+.++ +++.+- .++...++.+++++.-.+. .|-.|+
T Consensus 182 ~G~~ls~R~iTvSTsG-i-~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~-t~~rVt 257 (349)
T COG0820 182 EGLGLSKRRITVSTSG-I-V-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEK-SGRRVT 257 (349)
T ss_pred ccccccceEEEEecCC-C-c-hhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhc-cCceEE
Confidence 2 2221 2333444 2 3 445555542222 34455544432 332221 1367888998888865431 444444
Q ss_pred Ee--EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 252 SS--IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 252 ~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
-- ++=|..++.++..+++++++.+.. .+.+-+| .|+|.. .....+.++...+.+...+.|+..
T Consensus 258 ~EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~~~~--~y~r~~~~~i~~F~~~L~~~gv~~ 322 (349)
T COG0820 258 FEYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPVPGS--DYERSSKERIRKFLKILKKAGVLV 322 (349)
T ss_pred EEeeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCCCCC--CccCCcHHHHHHHHHHHHhCCeeE
Confidence 32 344667889999999999988876 3333222 244432 122334455666666666666654
No 158
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=66.22 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCccCCCCCC--C-CCCCCchHHHHHHHHHCCC--cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcE
Q 020304 110 GDTCTRGCRFCAVKTSRNP--A-PPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~~~--~-~~~~~ei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~ 184 (328)
..|||++|.||..+..... . ..+.+.+.++++.+...+. ..|.|+||+| .+ ..+.+.+.++++++++..++..
T Consensus 23 ~~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEP-l~-~~~~~~l~~l~~~~k~~~~~~~ 100 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDP-LH-PQNVPDILKLVQRVKAECPGKD 100 (154)
T ss_pred cCCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCc-cc-hhhHHHHHHHHHHHHHHCCCCC
Confidence 3999999999987653211 1 1222233455555555544 5899999997 33 2235788899999998777766
Q ss_pred EEEEeCCCCC
Q 020304 185 VECLTSDFRG 194 (328)
Q Consensus 185 i~~~t~~~~~ 194 (328)
+.+ ++++..
T Consensus 101 i~~-~tGy~~ 109 (154)
T PRK11121 101 IWV-WTGYKL 109 (154)
T ss_pred EEE-ecCCCH
Confidence 644 466653
No 159
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.1e-05 Score=68.77 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC---CCCCCCchHHHHHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~---~~~~~~ei~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
..++..=..|||.+|.+|........ ....+..+.++++++.+. +.+.|.||||+| .+. +.+.++++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP-~~~----~~l~~Ll~~l~ 96 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTGGEP-LLQ----PNLLELLELLK 96 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeCCcC-CCc----ccHHHHHHHHH
Confidence 45555668899999999987653322 123344556667777764 455899999997 332 57889999999
Q ss_pred HhCCCcEEEEEeCCCC
Q 020304 178 KQKPDIMVECLTSDFR 193 (328)
Q Consensus 178 ~~~~~~~i~~~t~~~~ 193 (328)
+. ++.+.+-|++.+
T Consensus 97 ~~--g~~~~lETngti 110 (212)
T COG0602 97 RL--GFRIALETNGTI 110 (212)
T ss_pred hC--CceEEecCCCCc
Confidence 87 677776666543
No 160
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.84 E-value=0.00055 Score=65.38 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCH-HHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESD-DDLKEAMA 270 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~-~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~-e~~~~~l~ 270 (328)
++++.++++.+.+++.+++++.+.++ ++ ++++ .....+.++.++++.+ +||.+.+.+++=.|-+. +++.+|+.
T Consensus 126 l~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~--n~~a~~il~~l~~l~~--~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 126 LPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLK--NPRAGLILEQLKWFQE--RRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred CCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhC--CCCHHHHHHHHHHHHH--cCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 58888999999999999998888765 55 4444 3478999999999999 99999888776445554 68999999
Q ss_pred HHHhC----CCCEEeeecccCC---CCCCc--ccCCCCCHHH-------HHHHH-HHHHhcCCceeeec
Q 020304 271 DLRSI----DVDILTLGQYLQP---TPLHL--TVKEYVTPEK-------FDFWK-AYGESIGFRYVASG 322 (328)
Q Consensus 271 ~l~~l----~~~~i~i~~~l~P---Tp~~~--~~~~~~~~~~-------~~~l~-~~~~~~G~~~~~~g 322 (328)
.|.++ -+...++ ..+ | |.... ..-..+++++ .+.|+ +...+.|-+++..+
T Consensus 202 dL~~~~~~~~P~v~S~-avV-PVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~~~~~~g~~fv~~s 268 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSV-AVV-PVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQFQRQLGSRFAWLA 268 (433)
T ss_pred HHHhhcccCCCceeEE-EEE-ccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEc
Confidence 99998 4444333 122 6 44321 1112334332 33443 34457888877653
No 161
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.70 E-value=0.0094 Score=53.79 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=98.0
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..+.++.+.+.|++.|-+. . |.+. +.-.+.++.+.+..++..+..+.. .+++.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g--~-p~~~----~~~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVG--I-PAMG----EEEREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--c-CCCC----HHHHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 3456778899999999999988774 2 2333 222356777776555666655443 2577888999999999
Q ss_pred EeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...+.+.. .+..+ ......+...+.++.+++ .|+.+..+++.+..-+++.+.+.++.+.+.|++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD--RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 88866554442 22221 111234556688889999 9998887776655677999999999999999998766
No 162
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.70 E-value=0.013 Score=53.03 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.++..+.++.+.+.|++.|-+.+ |... +...+.++.+.+......+.... ..+.+-++...++|++.+
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~---r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHI---RCHMDDARIAVETGVDGV 88 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEe---cCCHHHHHHHHHcCcCEE
Confidence 4567788999999999999888864 2232 44455566665433222332221 136778999999999998
Q ss_pred eechhhHHHHHh-hh-cCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQR-IV-RDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~~-~~-~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.+-+.+...+ .. +......+...+.++.+++ .|+.+..++.-.++-+.+.+.+.++.+.++|++.+.+
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS--KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 876655554322 11 1111234556677788999 9999999988777777899999999999999998766
No 163
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.55 E-value=0.0011 Score=62.67 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=99.3
Q ss_pred CccCCCCCC--CCCCCCchHHHHHHHHHC---CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 020304 120 CAVKTSRNP--APPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG 194 (328)
Q Consensus 120 C~~~~~~~~--~~~~~~ei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~ 194 (328)
|-+++.... .+.+.++|++.++.++.. +...|.++||++ .+. +++.++++..++.. =.++..+||+..+
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEP-Tvr----~DL~eiv~~a~e~g-~~hVqinTnGirl 151 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEP-TLR----DDLIEIIKIAREEG-YDHVQLNTNGIRL 151 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCc-cch----hhHHHHHHHHhhcC-ccEEEEccCceee
Confidence 655543322 345567888888888764 446889999996 454 89999999999872 2377788887543
Q ss_pred --CHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHH
Q 020304 195 --DLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAM 269 (328)
Q Consensus 195 --~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l 269 (328)
+++..+.|++||++.+.++-+..++ .+.. . .-++-.+++.+++ .|+. +.-++.++ |-+..++-+.+
T Consensus 152 A~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~-----~-~~eIk~alen~r~--~g~~-svVLVptl~rgvNd~~lG~ii 222 (475)
T COG1964 152 AFDPEYVKKLREAGVNTVYLSFDGVTPKTNWK-----N-HWEIKQALENCRK--AGLP-SVVLVPTLIRGVNDHELGAII 222 (475)
T ss_pred ccCHHHHHHHHhcCCcEEEEecCCCCCCchhh-----H-hhhhHHHHHHHHh--cCCC-cEEEEeehhcccChHHHHHHH
Confidence 6899999999999999987766544 3321 1 2333348888888 8976 22244456 78888999999
Q ss_pred HHHHh
Q 020304 270 ADLRS 274 (328)
Q Consensus 270 ~~l~~ 274 (328)
++..+
T Consensus 223 rfa~~ 227 (475)
T COG1964 223 RFALN 227 (475)
T ss_pred HHHHh
Confidence 99874
No 164
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.55 E-value=0.015 Score=53.31 Aligned_cols=140 Identities=17% Similarity=0.276 Sum_probs=96.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-+++...+. .+. ..+-.+.++.+.+. ++..+..+.+ ..+-+++..++|++.
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~--~~d~~e~~~~l~~~-~~~~~~~l~~----~~~~ie~A~~~g~~~ 95 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ--MADAAEVMAGIQRR-PGVTYAALTP----NLKGLEAALAAGADE 95 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc--cccHHHHHHhhhcc-CCCeEEEEec----CHHHHHHHHHcCCCE
Confidence 456778899999999999988776433322 221 12235777777654 5666654442 567788889999999
Q ss_pred EeechhhHHHH-HhhhcCCCCCHH----HHHHHHHHHHHhCCCCeEEEeEEEEcC---C---CHHHHHHHHHHHHhCCCC
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGYE----QSLEVLKHAKLSKKGLITKSSIMLGLG---E---SDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~~----~~l~~i~~~~~~~~Gi~v~~~~ivGlg---E---t~e~~~~~l~~l~~l~~~ 278 (328)
+.+.+.+.+.. .+.. +.+.+ ...++++.+++ .|+.+..++.+.++ + +.+.+.+.++.+.++|++
T Consensus 96 v~i~~~~s~~~~~~n~---~~~~~e~l~~~~~~v~~ak~--~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 96 VAVFASASEAFSQKNI---NCSIAESLERFEPVAEAAKQ--AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred EEEEEecCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 98866555442 2222 23444 46678888999 99988777665442 2 678899999999999999
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 171 ~i~l 174 (287)
T PRK05692 171 EISL 174 (287)
T ss_pred EEEe
Confidence 8766
No 165
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.51 E-value=0.017 Score=55.10 Aligned_cols=138 Identities=18% Similarity=0.112 Sum_probs=96.9
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..++++.+.+.|++.|-+. . |... +.-.+.++.+.+......+.++.. ...+.++.+.++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G--~-p~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAG--F-PAVS----EDEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEe--C-CCcC----hHHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 3456778899999999999988763 2 3344 233456677766544444443322 2577899999999999
Q ss_pred EeechhhHHHH-HhhhcCCCCCHH----HHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGYE----QSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~~----~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...+.+.. .... +.+.+ ...+.++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~---~~s~~~~l~~~~~~v~~a~~--~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKL---KKTREEVLERMVEAVEYAKD--HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 98877666652 3322 23444 45558888999 9999887766655667889999999999999998766
No 166
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.51 E-value=0.017 Score=54.87 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=96.8
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..++++.+.+.|++.|-+. - |... +.=.+.++.+.+..++..+..+.. ...+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~-p~~~----~~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG--I-PAMG----EEERAVIRAIVALGLPARLMAWCR---ARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHcCCCcEEEEEcC---CCHHHHHHHHcCCcCE
Confidence 3566778899999999999988773 2 3333 233456777776655556554432 2678899999999999
Q ss_pred EeechhhHHHH-HhhhcCCCCCHH----HHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGYE----QSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~~----~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.+-+.+.. ....+ .+.+ ...++++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 89 i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARD--RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHh--CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 88866555542 22222 2344 45588888999 9998776665544556788889999999999998766
No 167
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.49 E-value=0.021 Score=53.61 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=96.0
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccC-----CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-----~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..+.++..++++.+.+.|++.|-++-++. ..+...... =.+.++.+++..++..+..+......+.+.++...+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH
Confidence 34667889999999999999887752211 000100001 134555555544566665433222236788999999
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+|++.+.+.. . ....+...+.++.+++ .|+.+..+++....-+++.+.+.++.+.+.|++.+.+
T Consensus 100 ~gvd~iri~~----------~--~~e~~~~~~~i~~ak~--~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 100 AGVRVVRVAT----------H--CTEADVSEQHIGLARE--LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred cCCCEEEEEE----------e--cchHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 9999887643 0 2234667899999999 9999998888777788999999999999999998765
No 168
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.48 E-value=0.014 Score=55.44 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=100.0
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..++++.+.+.|++.|-+. . +..+ +.-.+.++.+.+..+...+..+.. ..++-++.+.++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG--~-p~~~----~~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAG--F-PIAS----EGEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----hHHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 3566788899999999999988763 2 2233 233466777776655556654443 2578899999999999
Q ss_pred EeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.+-+.+.. ....+ ......+...+.++.+++ .|+.+..++.-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE--HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88866555442 22222 111235677789999999 9999887776555667889999999999999998766
No 169
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.48 E-value=0.032 Score=50.54 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEE--eccCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLT--SVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~--gg~~~~l----~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~ 203 (328)
..+.++..++++.+.+.|++.|-+. ++..... ...+.+.+.++.+..+ ++..+..+......+.+.++...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHHh
Confidence 3566788999999999999987664 1111000 0001244444443322 24566655544334678888899
Q ss_pred HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.|++.+.+.. +....++..+.++.+++ .|+.+..+++...+-+.+.+.+.++.+.+.|++.+.+
T Consensus 93 ~~gv~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 93 GSVVDMIRVAF------------HKHEFDEALPLIKAIKE--KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred cCCcCEEEEec------------ccccHHHHHHHHHHHHH--CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999887753 13578999999999999 9999998888877889999999999999999998766
No 170
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.47 E-value=0.023 Score=53.22 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=94.2
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEecc----------CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVD----------RDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGDLRA 198 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~----------~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~ 198 (328)
..+.++..++++.+.+.|+..|-++-|+ .+..+ +.+++.+ +.+..++..+..+. ++ ..+.+.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~e~i~~----~~~~~~~~~~~~ll~pg-~~~~~d 92 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DLEYIEA----AADVVKRAKVAVLLLPG-IGTVHD 92 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hHHHHHH----HHHhCCCCEEEEEeccC-ccCHHH
Confidence 3456788999999999999988775211 11111 2344443 33333445555333 33 236788
Q ss_pred HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCC
Q 020304 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~ 278 (328)
++...++|++.+.+... ....+...+.++.+++ .|+.+..+++..+.-+++.+.+.++.+.+.|++
T Consensus 93 l~~a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~--~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 93 LKAAYDAGARTVRVATH------------CTEADVSEQHIGMARE--LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred HHHHHHCCCCEEEEEec------------cchHHHHHHHHHHHHH--cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999886431 2234567899999999 999998888877788999999999999999999
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 159 ~i~i 162 (333)
T TIGR03217 159 CVYI 162 (333)
T ss_pred EEEE
Confidence 8766
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.43 E-value=0.026 Score=51.04 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=93.4
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEec-----cCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSV-----DRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg-----~~~~--l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~ 203 (328)
.+.++..+.++.+.+.|++.+-+... .... +.. ..-.+.++.+++..++.++..+........+-++...
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 45677889999999999998876511 1000 111 1123455666555566676544322223567789999
Q ss_pred HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++|++.+.+.... ...+...+.++.+++ .|+.+..+++-...-+++.+.+.++.+.+.|++.+.+
T Consensus 96 ~~g~~~iri~~~~------------s~~~~~~~~i~~ak~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 96 DLGVDVVRVATHC------------TEADVSEQHIGAARK--LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HcCCCEEEEEech------------hhHHHHHHHHHHHHH--CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999998764311 123467889999999 9999888876655678999999999999999998766
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.41 E-value=0.028 Score=52.77 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=94.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++-.++++.+.+.|++.|-++..-.+. .+. ..+..++++.+++. ++..+..+.+ ..+-++...++|++.
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~~-~~~~~~~l~~----n~~die~A~~~g~~~ 137 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRNL-EGARFPVLTP----NLKGFEAAIAAGAKE 137 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHhc-cCCceeEEcC----CHHHHHHHHHcCcCE
Confidence 455677889999999999988775432221 111 22445566666653 3455444332 678889999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHH----HHHHHHHHHhCCCCeEEEeE--EEEc---C-CCHHHHHHHHHHHHhCCCCE
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQS----LEVLKHAKLSKKGLITKSSI--MLGL---G-ESDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~----l~~i~~~~~~~~Gi~v~~~~--ivGl---g-Et~e~~~~~l~~l~~l~~~~ 279 (328)
+.+.+-+.+...+... +.+.++. .+.++.+++ .|+.+..++ .+|. + -+.+.+.+.++.+.+.|++.
T Consensus 138 v~i~~s~Sd~h~~~n~--~~t~~e~l~~~~~~v~~Ak~--~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~ 213 (347)
T PLN02746 138 VAVFASASESFSKSNI--NCSIEESLVRYREVALAAKK--HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYE 213 (347)
T ss_pred EEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHH--cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCE
Confidence 9887766555332211 2345554 468888899 999987666 4553 2 25677889999999999998
Q ss_pred Eee
Q 020304 280 LTL 282 (328)
Q Consensus 280 i~i 282 (328)
+.+
T Consensus 214 I~l 216 (347)
T PLN02746 214 ISL 216 (347)
T ss_pred EEe
Confidence 776
No 173
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.40 E-value=0.018 Score=52.18 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=97.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC----
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG---- 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG---- 206 (328)
.+.++..+.++.+.+.|++.|-+.... .. .+.+ +.++.+.+..++..+..+... ..+.++...++|
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~---~~~~-~~~~~l~~~~~~~~~~~l~r~---~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPA---AS---PGDF-EAVKRIAREVLNAEICGLARA---VKKDIDAAAEALKPAK 86 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---HHHH-HHHHHHHHhCCCCEEEEEccC---CHhhHHHHHHhCCCCC
Confidence 456778899999999999988775321 12 1232 677888776677777665532 456677778888
Q ss_pred CcEEeechhhHHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 207 LDVFAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 207 ~~~i~~~~et~~~-~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++.+.+..-+.+. +.+..+ ......+...+.++.+++ .|+.+..+.+.+..-+++.+.+.++.+.++|++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS--HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9988875544433 222222 112235667789999999 9998876666655567888899999999999998766
No 174
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.04 E-value=0.012 Score=52.31 Aligned_cols=143 Identities=22% Similarity=0.196 Sum_probs=87.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~ 209 (328)
.+.++..+.++.+.+.|++.|-+. . +... +.-.+.++.+.+..+...+.........+ +..++.++++|++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg--~-~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVG--F-PFAS----EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEE--H-CTSS----HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEc--c-cccC----HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCE
Confidence 445677889999999999988775 1 1122 22223333333332334444333221112 23366677899999
Q ss_pred EeechhhHHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~-~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...+.+... ...+ ......+...+.++.+++ .|+.+..+.+-...-+.+++.+.++.+.++|++.+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~--~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE--LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH--TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh--cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 888655555322 2111 011235667788888899 9999865555444668899999999999999998877
No 175
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.97 E-value=0.023 Score=51.75 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=95.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++-.++++.+.+.|++.|-+.+...+. .+. .....++++.+... .+..+..+.+ ..+-++...++|++.
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~--~~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~~ 89 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQ--MADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVDE 89 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--cCCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcCE
Confidence 455777899999999999999886433222 111 11222456666543 3566655542 566789999999999
Q ss_pred EeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-----C-CHHHHHHHHHHHHhCCCCEEe
Q 020304 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-----E-SDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-----E-t~e~~~~~l~~l~~l~~~~i~ 281 (328)
+.+...+.+.. .+..+ ......+...+.++.+++ .|+.+..++..-++ . +.+.+.+.++.+.++|++.+.
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~--~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKA--AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEIS 167 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 88765555542 22221 111334677788889999 99998777765442 2 567788999999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 168 l 168 (274)
T cd07938 168 L 168 (274)
T ss_pred E
Confidence 6
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.70 E-value=0.13 Score=46.81 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=92.2
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC--------CC--CC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD--------FR--GD 195 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~--------~~--~~ 195 (328)
..+.++..+.+..+.+.|+..|-+.++-... +.. +.=.+.++.+.+..++..+.++... .. ..
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~---~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLN---EDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccC---CCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 3456777888999999999988775432100 111 1124455666655555555433221 00 14
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE--EcCCCHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv--GlgEt~e~~~~~l~~l~ 273 (328)
++.++...++|++.+.+.. +..+.+...+.++.+++ .|+.+..++.+ +..-+++.+.+.++.+.
T Consensus 94 ~~di~~~~~~g~~~iri~~------------~~~~~~~~~~~i~~ak~--~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFD------------ALNDVRNLEVAIKAVKK--AGKHVEGAICYTGSPVHTLEYYVKLAKELE 159 (275)
T ss_pred HHHHHHHHHcCCCEEEEee------------cCChHHHHHHHHHHHHH--CCCeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 6788899999999887743 13457888999999999 99987766544 22567888999999999
Q ss_pred hCCCCEEee
Q 020304 274 SIDVDILTL 282 (328)
Q Consensus 274 ~l~~~~i~i 282 (328)
+.|++.+.+
T Consensus 160 ~~Ga~~i~l 168 (275)
T cd07937 160 DMGADSICI 168 (275)
T ss_pred HcCCCEEEE
Confidence 999998776
No 177
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.70 E-value=0.17 Score=45.09 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=95.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++.+.++.+.+.|++++++..-+.. .. ...-.++++.+.+.. ++.+.+ .+++.+.|.++.+.++|++++.+|-
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g---~~~n~~~i~~i~~~~-~~pv~v--gGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FG---RGSNRELLAEVVGKL-DVKVEL--SGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CC---CCccHHHHHHHHHHc-CCCEEE--cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 6788999999999999999754431 11 123347888887763 455543 4566689999999999999998876
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE------EEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI------MLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~------ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
..++ +++-..+.++.+.+ . +.++.++ +.|..++..+..+.++.+.+.|++.+.++...
T Consensus 106 ~~l~-----------~p~l~~~i~~~~~~--~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~-- 169 (241)
T PRK14024 106 AALE-----------NPEWCARVIAEHGD--R-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVT-- 169 (241)
T ss_pred hHhC-----------CHHHHHHHHHHhhh--h-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeec--
Confidence 5443 22222333333322 1 2222222 22443455667788888999999988875322
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.-.+ ..+ . .++.++++....++..+++|
T Consensus 170 -~~g~-~~G-~---d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 170 -KDGT-LTG-P---NLELLREVCARTDAPVVASG 197 (241)
T ss_pred -CCCC-ccC-C---CHHHHHHHHhhCCCCEEEeC
Confidence 1110 011 1 24555555555666666665
No 178
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.60 E-value=0.12 Score=45.96 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=97.2
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|+++++++.-+...... ..-.++++.+++.. ++.+. ..+++.+.+.++.+.+.|++.+.+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-~~pv~--~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEV-FIPLT--VGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCceEEE
Confidence 5578889999999999999887654321211 23457778887763 45553 456666888888888999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-----------Ec-CCCHHHHHHHHHHHHhCCCCEE
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-----------GL-GESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-----------Gl-gEt~e~~~~~l~~l~~l~~~~i 280 (328)
+-..+. +++...+..+.+.+ ..+.+..++-. |- .++..+..+.+..+.+.|++.+
T Consensus 100 g~~~~~-----------~p~~~~~i~~~~~~--~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 100 NSAAVE-----------NPELIREIAKRFGS--QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred Cchhhh-----------ChHHHHHHHHHcCC--CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 743221 23333344333322 23444444332 12 4456667788888999999988
Q ss_pred eeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.++... .... . +.. .++.++++....++..+++|
T Consensus 167 ~v~~i~-~~g~---~-~g~---~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 167 LLTSMD-RDGT---K-KGY---DLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred EEeccC-CCCC---C-CCC---CHHHHHHHHhhCCCCEEEeC
Confidence 885322 2110 0 111 23444555555566666665
No 179
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.60 E-value=0.2 Score=49.38 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=94.5
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..++++.+.+.|++.|-+.. + ..+. .. .+.++.+.+...+..+..+... .++.++.+.++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~--p-~~~~---~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS--A-ITSE---GE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC--C-cCCH---HH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 35667888999999999999887742 2 1221 22 3456666655445555544432 366789999999999
Q ss_pred EeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...+.+.. ....+ ......+...++++.+++ .|+.+..+..-+..-+.+-+.+.++.+.+.|++.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD--HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 88866665542 22222 112234566677788888 9998877766554555777779999999999998766
No 180
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.60 E-value=0.22 Score=49.54 Aligned_cols=141 Identities=18% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCc
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~ 208 (328)
..+.++..++++.+.+.|++.|-+. .+ ..+. ..+ +.++.+.+..++..+..+......+ +..++.++++|.+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G--~p-~~s~---~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAG--FP-ASSP---GDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc--CC-CCCh---HHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 3566778899999999999988773 22 2222 232 3446665555566776655321112 3445566688998
Q ss_pred EEeechhhHHH-HHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 209 VFAHNIETVKR-LQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 209 ~i~~~~et~~~-~~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++.+...+.+. +...+ +.+.++ ..++++.+++ .|+.+..+..-+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 95 ~v~i~~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ak~--~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 95 RIHTFIATSPIHMEYKL---KMSREEVLEMAVEAVKYARS--YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred EEEEEECCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 88886666554 22222 234444 5588888999 9998765555444445677889999999999998766
No 181
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.58 E-value=0.31 Score=44.32 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=89.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEe----CCC-CCCHHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT----SDF-RGDLRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t----~~~-~~~~e~l~~L~~ 204 (328)
.+.++..+.++.+.+.|++.|-+..+. .. +.-.+.++.+.+.. ++..+..+. .+. ..++..++.+.+
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~ 89 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPG---SN----PKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLE 89 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCc---CC----HHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHh
Confidence 456778899999999999998874321 22 22344455555542 234443222 111 113457888999
Q ss_pred cCCcEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEE---EEcCCCHHHHHHHHHHHHhCCCCE
Q 020304 205 SGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 205 aG~~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i---vGlgEt~e~~~~~l~~l~~l~~~~ 279 (328)
+|++.+.+..-+.+.. ....+ ......+...+.++.+++ .|+.+..+.+ -|...+.+.+.+.++.+.+.|++.
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~--~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCE
Confidence 9999988755444332 22111 112356677888889999 9998877533 122345777788999999999998
Q ss_pred Eee
Q 020304 280 LTL 282 (328)
Q Consensus 280 i~i 282 (328)
+.+
T Consensus 168 i~l 170 (273)
T cd07941 168 LVL 170 (273)
T ss_pred EEE
Confidence 765
No 182
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.52 E-value=0.12 Score=45.53 Aligned_cols=124 Identities=11% Similarity=0.074 Sum_probs=77.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
...+.++++++.+.|++.+++---+....+. ...=.++++.+++..| +.++..... .++.++.++++|.+.+++
T Consensus 24 ~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 24 WLKFNETLTTLSENQLRLLHFDIADGQFSPF--FTVGAIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIVTL 97 (228)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEEEE
Confidence 3466788999999999988773222111121 1111234444543322 455554432 467899999999999999
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
..|+.. +..++++.+++ .|+.+.+++.+..+-..+.+...+. .+|.+-++
T Consensus 98 H~Ea~~--------------~~~~~l~~Ik~--~g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiM 147 (228)
T PRK08091 98 QVEQTH--------------DLALTIEWLAK--QKTTVLIGLCLCPETPISLLEPYLD-----QIDLIQIL 147 (228)
T ss_pred cccCcc--------------cHHHHHHHHHH--CCCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEE
Confidence 887521 23456777788 8987778888877666666655543 26666664
No 183
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.40 E-value=0.33 Score=44.29 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=88.9
Q ss_pred CCCCchHHHHHHH-HHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh------CCCcEEEEEeCCCCCCHHHHHHHH
Q 020304 131 PDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ------KPDIMVECLTSDFRGDLRAVETLV 203 (328)
Q Consensus 131 ~~~~ei~~~~~~~-~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~------~~~~~i~~~t~~~~~~~e~l~~L~ 203 (328)
.+.++-.++++.+ .+.|++.|-++. +..+. +.+ +.++.+.+. .+++.+..+.+ ...-++...
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~---~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A~ 84 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVAS---ARVSE---GEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWIK 84 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecC---CCCCH---HHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHHH
Confidence 4556778889886 667999888753 21232 222 344444321 12344433332 346788999
Q ss_pred HcCCcEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC----CCHHHHHHHHHHHHhCCC
Q 020304 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG----ESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg----Et~e~~~~~l~~l~~l~~ 277 (328)
++|++.+.+.+-+.+.. .+..+ ......+++.+.++.+++ .|+.+..++.- ++ -+++.+.+.++.+.++|+
T Consensus 85 ~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~--~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G~ 161 (280)
T cd07945 85 SAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK--NGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLPI 161 (280)
T ss_pred HCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh--CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcCC
Confidence 99999998866555542 22221 112345567778888899 99988777663 33 468889999999999999
Q ss_pred CEEee
Q 020304 278 DILTL 282 (328)
Q Consensus 278 ~~i~i 282 (328)
+.+.+
T Consensus 162 ~~i~l 166 (280)
T cd07945 162 KRIML 166 (280)
T ss_pred CEEEe
Confidence 98776
No 184
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=96.31 E-value=0.6 Score=45.74 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=91.7
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----C---C--CC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----F---R--GD 195 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~---~--~~ 195 (328)
..+.++..++++.+.+.|+..+-+.||...+ +.. +.-.+.++.+++..|+..+..+..+ . . +-
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN---ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC---CCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhh
Confidence 4566788899999999999998876654311 111 2345677777776677776543221 1 0 01
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~ 273 (328)
+..++...++|++.+.+.....+ .+....+++.+++ .|..+...+-+.+ ..|.+.+.+.++.+.
T Consensus 98 ~~fv~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~ 163 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK--HGAHVQGAISYTVSPVHTLEYYLEFARELV 163 (467)
T ss_pred HHHHHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH--CCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 34578889999998877432211 3445667788888 8988775553333 567888999999999
Q ss_pred hCCCCEEee
Q 020304 274 SIDVDILTL 282 (328)
Q Consensus 274 ~l~~~~i~i 282 (328)
+.|++.+.+
T Consensus 164 ~~Gad~I~i 172 (467)
T PRK14041 164 DMGVDSICI 172 (467)
T ss_pred HcCCCEEEE
Confidence 999998776
No 185
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.28 E-value=0.38 Score=42.43 Aligned_cols=131 Identities=19% Similarity=0.172 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|++.++++..+.. ... ...-.++++.+.+. .++.+.+ .++..+.+.++.+.++|++.+.+
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~-~~g--~~~~~~~i~~i~~~-~~~pv~~--~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGA-KAG--KPVNLELIEAIVKA-VDIPVQV--GGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcc-ccC--CcccHHHHHHHHHH-CCCCEEE--cCCcCCHHHHHHHHHcCCCEEEE
Confidence 356788899999999999999875431 111 12345667777665 2455543 56666889999999999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE------EEEc-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI------MLGL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~------ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+-..++. .+...+..+...+ .+.++.++ +.|. ..+..+..+..+.+.++|++.+.+.
T Consensus 103 g~~~l~~-----------~~~l~ei~~~~~~---~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 103 GTAAVKN-----------PELVKEACKKFPG---KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred CchHHhC-----------HHHHHHHHHHhCC---CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 7554431 1222223332211 13333332 2233 3345566778888999999976663
No 186
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.25 E-value=0.3 Score=49.17 Aligned_cols=138 Identities=15% Similarity=0.094 Sum_probs=92.4
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCC--CCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----C---C--CCHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTSD-----F---R--GDLR 197 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l--~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~---~--~~~e 197 (328)
+.+.++..++++.+.+.|+..+-+.||...+. +-. .+.-.+.++.+++..++..+..+..+ . . .-++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~-~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL-NEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC-CCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 45667888999999999999998876543221 100 13346677888876677777655321 1 0 1256
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhC
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l 275 (328)
.++...++|++.+.+.... .+.+....+++.+++ .|+.+...+-+.. -.|.+.+.+.++.+.+.
T Consensus 96 ~v~~a~~~Gvd~irif~~l------------nd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDAL------------NDPRNLQAAIQAAKK--HGAHAQGTISYTTSPVHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHHHHHCCCCEEEEEEec------------CcHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 7888999999988764211 123456677788888 8887766543322 35778888889999999
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 162 Gad~I~i 168 (582)
T TIGR01108 162 GVDSICI 168 (582)
T ss_pred CCCEEEE
Confidence 9888766
No 187
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.21 E-value=0.37 Score=47.00 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=89.6
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----CC-----CC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR-----GD 195 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l----~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~~-----~~ 195 (328)
..+.++..++++.+.+.|+..+-+.||...+. .. +.-.+.++.+++..|+..+..+..+ .. .-
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN---EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC---CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 35567788999999999999998876642211 11 2235667777776677766532211 10 13
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~ 273 (328)
++.++...++|++.+.+.....+ .+...++++.+++ .|+.+...+-+-. -.+.+-+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd------------~~n~~~~v~~ak~--~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALND------------VRNLETAVKATKK--AGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCc------------HHHHHHHHHHHHH--cCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 57788899999998877432111 1235557888888 8887654443322 456788888889999
Q ss_pred hCCCCEEee
Q 020304 274 SIDVDILTL 282 (328)
Q Consensus 274 ~l~~~~i~i 282 (328)
+.|++.+.+
T Consensus 165 ~~Gad~I~i 173 (448)
T PRK12331 165 EMGADSICI 173 (448)
T ss_pred HcCCCEEEE
Confidence 999988776
No 188
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.19 E-value=0.31 Score=49.26 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=91.9
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC--CC--------CC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD--FR--------GD 195 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~--~~--------~~ 195 (328)
+.+.++...+++.+.+.|+..+-+.||...+ +.. +.-.+.++.+++..|+..+..+..+ .. .-
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~---edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv 98 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN---EDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVV 98 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC---ccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhh
Confidence 4556778899999999999999887664311 111 3445667888877777777654321 11 13
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~ 273 (328)
++.++...++|++.+.+.... .+.+....+++.+++ .|..+..++-+-. ..|.+.+.+.++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~l------------nd~~n~~~~i~~ak~--~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDAL------------NDVRNMEVAIKAAKK--AGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEec------------ChHHHHHHHHHHHHH--cCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 567888899999988764311 123455667788888 8887765553322 457788888888888
Q ss_pred hCCCCEEee
Q 020304 274 SIDVDILTL 282 (328)
Q Consensus 274 ~l~~~~i~i 282 (328)
+.|++.+.+
T Consensus 165 ~~Gad~I~i 173 (592)
T PRK09282 165 EMGCDSICI 173 (592)
T ss_pred HcCCCEEEE
Confidence 888887766
No 189
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.13 E-value=0.82 Score=42.31 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=75.1
Q ss_pred CCCCCCHHHHHHHHHcCCcEEeechhhH-HHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHH
Q 020304 190 SDFRGDLRAVETLVHSGLDVFAHNIETV-KRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDL 265 (328)
Q Consensus 190 ~~~~~~~e~l~~L~~aG~~~i~~~~et~-~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~ 265 (328)
|++- .+.-++.|-..||.++-++.++. ++. +.-.+ +|+....-+....+++ +|+++.+++|-.+ . .-+.|+
T Consensus 231 PDyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNR--GHTV~aVce~F~laKD--aG~KvV~HMMPdLPNVg~eRDi 305 (554)
T KOG2535|consen 231 PDYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNR--GHTVKAVCESFHLAKD--AGFKVVAHMMPDLPNVGMERDI 305 (554)
T ss_pred cccc-hhhhHHHHHhcCCceEEeccchhHHHhhhcccC--CccHHHHHHHhhhhhc--cCceeehhhCCCCCCCchhhhH
Confidence 4443 45678888899999999999986 444 34333 8999999999999999 9999999999766 2 234455
Q ss_pred HHHHHHHHhC--CCCEEeeeccc--CCCCCC--cc--cCCCCCHHHHHHHHHHH
Q 020304 266 KEAMADLRSI--DVDILTLGQYL--QPTPLH--LT--VKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 266 ~~~l~~l~~l--~~~~i~i~~~l--~PTp~~--~~--~~~~~~~~~~~~l~~~~ 311 (328)
+...++...- ..|-+-+++.+ +.|.++ |. .....+|..+-.+.+..
T Consensus 306 eqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArI 359 (554)
T KOG2535|consen 306 EQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARI 359 (554)
T ss_pred HHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHH
Confidence 5555555443 34444444332 236554 11 12345666665554433
No 190
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.07 E-value=0.31 Score=48.01 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=87.7
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC----------
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR---------- 193 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~---------- 193 (328)
.+++.++...+++.+.+.|+..+-+.||...+ +. +.=.+.++.+++..|+..+..+..+..
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~----Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~dd 97 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN----EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDE 97 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC----CCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchh
Confidence 34567888999999999999988887665322 22 223456777777777777665443211
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMAD 271 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~ 271 (328)
.-+..++...++|++.+.+... -.+.+....+++.+++ .|..+...+ ..+.-.|.+.+.+.++.
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~------------lndv~nl~~ai~~vk~--ag~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDA------------LNDPRNLEHAMKAVKK--VGKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEec------------CChHHHHHHHHHHHHH--hCCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 1256788889999998876421 1123444555666666 666553333 33446677777777777
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++.+.+
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 77777777665
No 191
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.07 E-value=0.42 Score=42.20 Aligned_cols=163 Identities=11% Similarity=0.119 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|+++++++.-+...... ..-.++++.+.+.. ++.+.+ .++..+.+.++.+.++|++.+-+
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~---~~n~~~~~~i~~~~-~~pv~~--~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKRGR---EPLFELISNLAEEC-FMPLTV--GGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCHHHHHHHHHhC-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEE
Confidence 3477889999999999999997644321111 12245666666552 445533 44555788888899999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE---------c-C---CCHHHHHHHHHHHHhCCCCE
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---------L-G---ESDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG---------l-g---Et~e~~~~~l~~l~~l~~~~ 279 (328)
+-..++ +.+...+..+...+ ..+.++.++--| . | ++..+..+.++.+.+.|++.
T Consensus 103 g~~~l~-----------~~~~~~~~~~~~~~--~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~ 169 (232)
T TIGR03572 103 NTAALE-----------NPDLIEEAARRFGS--QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGE 169 (232)
T ss_pred ChhHhc-----------CHHHHHHHHHHcCC--ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCE
Confidence 743322 12222233322211 113344443222 1 1 23445677888899999999
Q ss_pred EeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 280 LTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 280 i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+.+..+. +.... +.. .++.++++....++..+++|
T Consensus 170 i~i~~i~-~~g~~----~g~---~~~~~~~i~~~~~ipvia~G 204 (232)
T TIGR03572 170 ILLNSID-RDGTM----KGY---DLELIKTVSDAVSIPVIALG 204 (232)
T ss_pred EEEeCCC-ccCCc----CCC---CHHHHHHHHhhCCCCEEEEC
Confidence 8885432 21110 111 24445555555566666665
No 192
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.90 E-value=0.76 Score=41.42 Aligned_cols=132 Identities=9% Similarity=0.082 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|+++++++.-+...... ..-.++++.+.+. .++.+.+ .++..+.+.++.+.++|++.+-+
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~---~~n~~~i~~i~~~-~~~pv~~--gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASKRGS---EPNYELIENLASE-CFMPLCY--GGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCC---cccHHHHHHHHHh-CCCCEEE--CCCCCCHHHHHHHHHCCCCEEEE
Confidence 4577889999999999999998654421111 2234566666665 3555543 34555788888888999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-----------c-CCCHHHHHHHHHHHHhCCCCEE
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----------L-GESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-----------l-gEt~e~~~~~l~~l~~l~~~~i 280 (328)
|-+.++ +.+-..+..+...+ .-+.++.++--| - ..+..+..+.+..+.++|++.+
T Consensus 103 gs~~~~-----------~~~~~~~~~~~~~~--~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~i 169 (258)
T PRK01033 103 NTAALE-----------DPDLITEAAERFGS--QSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEI 169 (258)
T ss_pred ChHHhc-----------CHHHHHHHHHHhCC--CcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEE
Confidence 743322 12222333332221 124445554322 1 1344456788888899999988
Q ss_pred eee
Q 020304 281 TLG 283 (328)
Q Consensus 281 ~i~ 283 (328)
.+.
T Consensus 170 i~~ 172 (258)
T PRK01033 170 LLN 172 (258)
T ss_pred EEE
Confidence 774
No 193
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.81 E-value=0.54 Score=47.52 Aligned_cols=135 Identities=16% Similarity=0.071 Sum_probs=93.1
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC----------C
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR----------G 194 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~----------~ 194 (328)
+.+.++...+++.+.+.|+..+-+.||-..+ +. +.=.+.++.+++..|+..+..+..+.. .
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~----e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddv 98 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG----EDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDV 98 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC----CCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHH
Confidence 4567788999999999999999887653211 22 222566777877777777755444311 0
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l 272 (328)
-++.++..+++|++.+.+... -.+.+....+++.+++ .|..+...+ ......|.+.+.+.++.+
T Consensus 99 v~~~v~~a~~~Gid~~rifd~------------lnd~~~~~~ai~~ak~--~G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFDA------------MNDPRNLETALKAVRK--VGAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHHhcCCCEEEEeee------------CCcHHHHHHHHHHHHH--cCCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 145688899999999887531 1234567778888888 888754433 333366788888889999
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.+.|++.+.+
T Consensus 165 ~~~Gad~i~i 174 (593)
T PRK14040 165 EDMGVDSLCI 174 (593)
T ss_pred HHcCCCEEEE
Confidence 9999988766
No 194
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=95.81 E-value=1.1 Score=44.50 Aligned_cols=140 Identities=16% Similarity=0.019 Sum_probs=87.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~ 209 (328)
.+.++-.++++.+.+.|++.|-+. .+ ..+. ..+ +.++.+.+..++..+..+......+ +..++.+..++.++
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG--~p-~~s~---~d~-e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~ 92 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAG--FP-VSSP---GDF-EAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFR 92 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE--CC-CCCH---HHH-HHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCE
Confidence 566777899999999999988653 22 2222 333 3446665554555666555321111 23344555567788
Q ss_pred EeechhhHHHH-HhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+-.-+.+.. .... +.+.++ ..++++.+++ .|..+..+..-+..-..+.+.+.++.+.+.|++.+.+
T Consensus 93 v~i~~~~S~~h~~~~l---~~s~~e~l~~~~~~v~~a~~--~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 93 IHTFIATSPIHLEHKL---KMTRDEVLERAVGMVKYAKN--FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred EEEEEccCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 87755555442 2222 234444 5568888888 8887655555444456778889999999999998766
No 195
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.77 E-value=0.41 Score=42.21 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=79.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++.+++..-+.. +. +...-.++++.+++.. ++.+. ..+++.+.+.++.+.++|++.+.
T Consensus 27 ~~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~--~~~~~~~~i~~i~~~~-~~pv~--~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 27 YSDDPVEVAKKWEEAGAKWLHVVDLDGA-KG--GEPVNLELIEEIVKAV-GIPVQ--VGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred ECCCHHHHHHHHHHcCCCEEEEECCCcc-cc--CCCCCHHHHHHHHHhc-CCCEE--EeCCcCCHHHHHHHHHcCCCEEE
Confidence 3467788999999999999988743321 11 1133456777777663 44543 35556688999999999999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE----E--Ec-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM----L--GL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i----v--Gl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
++-..+.. .+...+..+...+ .-+.++.++- + |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 101 igs~~l~d-----------p~~~~~i~~~~g~--~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 101 IGTAAVKN-----------PELVKELLKEYGG--ERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred ECchHHhC-----------hHHHHHHHHHcCC--ceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 76544321 2222222222211 1222333221 1 21 2345566678888899999988774
No 196
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.70 E-value=1 Score=39.60 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=79.1
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|++++++..-+. ...+ ...-.++++.+.+.. ++.+.+ .+++.+.+.++.+.++|++.+.+
T Consensus 27 ~~dp~~~a~~~~~~g~~~l~v~dl~~--~~~g-~~~~~~~i~~i~~~~-~~pi~~--ggGI~~~ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 27 GDDPVEAAKKWEEEGAERIHVVDLDG--AKEG-GPVNLPVIKKIVRET-GVPVQV--GGGIRSLEDVEKLLDLGVDRVII 100 (230)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCc--cccC-CCCcHHHHHHHHHhc-CCCEEE--eCCcCCHHHHHHHHHcCCCEEEE
Confidence 34678899999999999998864332 2111 122245666666553 445543 55666899999999999999987
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE------EEc-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM------LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i------vGl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+...++ +.+.+.+..+.+.. ..+.++.++- -|. ..+..+..+.++.+.+.|++.+.+.
T Consensus 101 gs~~l~-----------d~~~~~~~~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 101 GTAAVE-----------NPDLVKELLKEYGP--ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred ChHHhh-----------CHHHHHHHHHHhCC--CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 754433 12333344433321 1133333322 222 1223455677888889999977764
No 197
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.63 E-value=1.1 Score=40.38 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCC---CCHHHHHHHHHcCCcEEeechhhH---------HH-HHhhhcCCCCCHHHHH
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFR---GDLRAVETLVHSGLDVFAHNIETV---------KR-LQRIVRDPRAGYEQSL 235 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~---~~~e~l~~L~~aG~~~i~~~~et~---------~~-~~~~~~~~~~~~~~~l 235 (328)
+.+.++.++....+.-+..++.+.. .+.+.++.|.++|.|-+-+|+-.. .. -.+..+ .+.+.++.+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~-~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALA-AGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHH-CCCCHHHHH
Confidence 4555666665533334434443332 134667777777777776533211 11 112222 378899999
Q ss_pred HHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEee
Q 020304 236 EVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 236 ~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.++.+++...++++ .+|.-... -.--+.+.++.+++.|++-+-+
T Consensus 83 el~~~~r~~~~~~Pi--vlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 83 ELVEEIRAKGVKVPI--VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHhcCCCCCE--EEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 999999983333333 22211111 1223455678888899987655
No 198
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.61 E-value=1 Score=40.38 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=94.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|++.++++.-+..... ...-.++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.+
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~---~~~n~~~i~~i~~~~-~~pv~~--~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEG---RTTMIDVVERTAETV-FIPLTV--GGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccccc---ChhhHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEE
Confidence 347788999999999999999765432111 234567777777763 455543 45666899999999999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--------------EEEc-CCCHHHHHHHHHHHHhCCC
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--------------MLGL-GESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--------------ivGl-gEt~e~~~~~l~~l~~l~~ 277 (328)
+-..+.. .+...+..+..-+ ..+.++.++ +-|- .++..+..+.++.+.+.|+
T Consensus 103 gt~~~~~-----------p~~~~~~~~~~~~--~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~ 169 (254)
T TIGR00735 103 NTAAVKN-----------PELIYELADRFGS--QCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGA 169 (254)
T ss_pred ChhHhhC-----------hHHHHHHHHHcCC--CCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCC
Confidence 7544331 1111121111100 012233332 1122 3456677888899999999
Q ss_pred CEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 278 DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 278 ~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+.+.+. -+.. ... .+.. .++.++++....++..+++|
T Consensus 170 ~~iivt-~i~~-~g~---~~g~---~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 170 GEILLT-SMDK-DGT---KSGY---DLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred CEEEEe-CcCc-ccC---CCCC---CHHHHHHHHHhCCCCEEEeC
Confidence 988874 2311 110 0111 24445555555666776665
No 199
>PRK14057 epimerase; Provisional
Probab=95.50 E-value=0.59 Score=41.86 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=74.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEE--ecc-CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLT--SVD-RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~--gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
+...+.++++++.+.|++.+++- .|. .|.+. .=.++++.+++..| +.++..... .+..++.++++|.+
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNit-----fGp~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad 100 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFT-----VGPWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAH 100 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCccCCccc-----cCHHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCC
Confidence 33466789999999999988763 232 12222 11234444444333 455544432 45789999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-------EEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-------TKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-------v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
.+.+..|+.. ...++++.+|+ .|++ +.+++-+..+-..+.+...+. .+|.+-
T Consensus 101 ~It~H~Ea~~--------------~~~~~l~~Ir~--~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~VL 159 (254)
T PRK14057 101 CITLQAEGDI--------------HLHHTLSWLGQ--QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVIQ 159 (254)
T ss_pred EEEEeecccc--------------CHHHHHHHHHH--cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEEE
Confidence 9999888521 12356666677 7763 456666666655565554443 266666
Q ss_pred ee
Q 020304 282 LG 283 (328)
Q Consensus 282 i~ 283 (328)
++
T Consensus 160 vM 161 (254)
T PRK14057 160 LL 161 (254)
T ss_pred EE
Confidence 64
No 200
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.42 E-value=0.88 Score=40.34 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.+.++.+.+.|++.+++..-+.. .. +.....+.++.+.+.. ++.+.+ .+++.+.+.++.+.++|++.+.++
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~-~~--~~~~~~~~i~~i~~~~-~~~l~v--~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA-FE--GERKNAEAIEKIIEAV-GVPVQL--GGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh-hc--CCcccHHHHHHHHHHc-CCcEEE--cCCcCCHHHHHHHHHcCCCEEEEC
Confidence 45788889999999999988643311 11 1234455666666553 455543 556568899999999999999887
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE----E--EEc-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI----M--LGL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~----i--vGl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
-+.+++ .+.+.+..+.+.. ..+.++.++ + -|. .++..+..+.++.+.+.|++.+.+.
T Consensus 106 s~~~~~-----------~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVEN-----------PEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhhC-----------hHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 654321 1222222222211 112222221 1 233 2233366777788889999988774
No 201
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.38 E-value=0.6 Score=45.62 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=86.7
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC-----C-----CHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-----G-----DLR 197 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~-----~-----~~e 197 (328)
+++.+++..+++.+.+.|+..+-+.||-..+ +.-. .+.=.+.++.+++..|+..+..+..+.. - -+.
T Consensus 31 r~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl-~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~ 109 (468)
T PRK12581 31 RLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFL-NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK 109 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc-CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH
Confidence 3566788899999999999988887775433 1100 0222455677777667766654433311 0 134
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhC
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l 275 (328)
.++..++.|++.+.+.. . -.+.+....+++.+++ .|..+...+.+-. ..|.+-+.+.++.+.++
T Consensus 110 fv~~a~~~Gidi~Rifd--------~----lnd~~n~~~ai~~ak~--~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 110 FISLSAQNGIDVFRIFD--------A----LNDPRNIQQALRAVKK--TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHHCCCCEEEEcc--------c----CCCHHHHHHHHHHHHH--cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 58888999999887632 0 1245666677777777 7776543332211 44666677777777788
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 8877665
No 202
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.20 E-value=1.3 Score=37.92 Aligned_cols=108 Identities=13% Similarity=0.245 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCC---CHHHHHHHHHcCCcEEeech------------hhHHHHHhhhcCCCCCH
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFRG---DLRAVETLVHSGLDVFAHNI------------ETVKRLQRIVRDPRAGY 231 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~~---~~e~l~~L~~aG~~~i~~~~------------et~~~~~~~~~~~~~~~ 231 (328)
+.+.+.+..+|+.+.+.-+...|.++.- +-..++-|.+.|.|-+-+++ +..++. ... .+.++
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~-aL~--ng~tl 79 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRR-ALL--NGTTL 79 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHH-HHH--cCCcH
Confidence 4566666667776555555555554431 23556666677777766532 112221 111 36789
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeEEEEcCC--CHHHHHHHHHHHHhCCCCEE
Q 020304 232 EQSLEVLKHAKLSKKGLITKSSIMLGLGE--SDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 232 ~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE--t~e~~~~~l~~l~~l~~~~i 280 (328)
...++.++.++. .|+.+ --+++|+.. -.--.+..+..+++.|+.-.
T Consensus 80 ~~i~emvk~ar~--~gvt~-PIiLmgYYNPIl~yG~e~~iq~ak~aGanGf 127 (268)
T KOG4175|consen 80 NSIIEMVKEARP--QGVTC-PIILMGYYNPILRYGVENYIQVAKNAGANGF 127 (268)
T ss_pred HHHHHHHHHhcc--cCccc-ceeeeecccHHHhhhHHHHHHHHHhcCCCce
Confidence 999999999998 88742 234455511 11223466777788887643
No 203
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.15 Score=48.09 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=87.3
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++-....+.+.+.|++.|++-+... + ..+..++++++|+.+|++.+.. +...+.+..+.|.+||+|.+.++
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG--n----S~~qiemik~iK~~yP~l~Via---GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQG--N----SIYQLEMIKYIKETYPDLQIIA---GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCC--c----chhHHHHHHHHHhhCCCceeec---cceeeHHHHHHHHHccCceeEec
Confidence 3335566777889999999965443 2 3788999999999999988843 33358999999999999999886
Q ss_pred hhhHHH-H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETVKR-L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~~~-~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.-+..- . .+......-.--.+.++.+.|++ .|+++.++-= -++..++. ....+|.+.+....++
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q--~gvpviADGG---iq~~Ghi~----KAl~lGAstVMmG~lL 386 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQ--FGVPCIADGG---IQNVGHVV----KALGLGASTVMMGGLL 386 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHh--cCCceeecCC---cCccchhH----hhhhcCchhheeccee
Confidence 654332 1 11111011233457788888888 8887655421 23334443 3334666655554444
No 204
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=95.05 E-value=0.67 Score=40.98 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=96.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+..++.+.++.+.+.|++++++..-+. ... +...-.++++.+.+.. .+.+.+ .+++.+.+.++.+.++|++++
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLda--a~~-g~~~n~~~i~~i~~~~-~~~i~v--gGGIrs~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDA--AKE-GRGSNLELIKEIAKET-GIPIQV--GGGIRSIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHH--HCC-THHHHHHHHHHHHHHS-SSEEEE--ESSE-SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccC--ccc-CchhHHHHHHHHHhcC-CccEEE--eCccCcHHHHHHHHHhCCCEE
Confidence 3456788899999999999999975432 111 1344557888888774 466654 445568999999999999999
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-----cCC---CHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LGE---SDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-----lgE---t~e~~~~~l~~l~~l~~~~i~i 282 (328)
.++-++++. .+-..+..+..-. --+-++.++--| -|- +.-+..+.++.+.++|+..+-+
T Consensus 100 vigt~~~~~-----------~~~l~~~~~~~g~--~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 166 (229)
T PF00977_consen 100 VIGTEALED-----------PELLEELAERYGS--QRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIIL 166 (229)
T ss_dssp EESHHHHHC-----------CHHHHHHHHHHGG--GGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEE
T ss_pred EeChHHhhc-----------hhHHHHHHHHcCc--ccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEE
Confidence 998765542 1112222222222 123344444433 222 2356888899999999998766
Q ss_pred ecccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 283 GQYLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 283 ~~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
...-+- |-. --.++.+++++...+...+++|
T Consensus 167 tdi~~dGt~~---------G~d~~~~~~l~~~~~~~viasG 198 (229)
T PF00977_consen 167 TDIDRDGTMQ---------GPDLELLKQLAEAVNIPVIASG 198 (229)
T ss_dssp EETTTTTTSS---------S--HHHHHHHHHHHSSEEEEES
T ss_pred eeccccCCcC---------CCCHHHHHHHHHHcCCCEEEec
Confidence 422211 211 1124556666666677777775
No 205
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.03 E-value=1.4 Score=38.28 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.+.+..+++.....|+.++-+. .+ . ++++.+++. .++.+.+ +. .+++.+-.-.+||.+.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIA-------ad---p---~LV~~~~~~-s~lPICV-Sa---Vep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIA-------AD---P---ELVKLAKSL-SNLPICV-SA---VEPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEec-------CC---H---HHHHHHHHh-CCCCeEe-ec---CCHHHHHHHHHhCCCEE
Confidence 345567778888887888877663 11 2 455555554 4677744 33 47888888899999998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
-+|. +|.+|...+ ..+.+++++..+.-|+..+.+..+.++-.-+ ..++-.++...|.++|+|.+.-
T Consensus 86 EIGN--fDsFY~qGr--~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 86 EIGN--FDSFYAQGR--RFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred Eecc--hHHHHhcCC--eecHHHHHHHHHHHHHhCCCCceEEecCccc--cHHHHHHHHHHHHHhCCcEEEc
Confidence 8743 456776554 7899999999999999888888777765433 4566778889999999998754
No 206
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.71 E-value=2.2 Score=38.16 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++++++.+-+..... ...-.++++.+++.. ++.+. ..++..+.+.++.+.++|++.+.
T Consensus 28 ~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~---~~~~~~~i~~i~~~~-~ipv~--~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 28 DAGDPVELAKRYNEEGADELVFLDITASSEG---RDTMLDVVERVAEQV-FIPLT--VGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEEeCCccccc---CcchHHHHHHHHHhC-CCCEE--eeCCCCCHHHHHHHHHcCCCEEE
Confidence 3456788888888999999999875542111 145567788877763 45553 35666688999998999999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE-----------E-Ec-CCCHHHHHHHHHHHHhCCCC
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM-----------L-GL-GESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i-----------v-Gl-gEt~e~~~~~l~~l~~l~~~ 278 (328)
++-..+. +++...+..+...+ -.+.++.++- + |- ..+..+..+.++.+.+.|++
T Consensus 102 igt~~l~-----------~p~~~~ei~~~~g~--~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (253)
T PRK02083 102 INSAAVA-----------NPELISEAADRFGS--QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAG 168 (253)
T ss_pred EChhHhh-----------CcHHHHHHHHHcCC--CCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCC
Confidence 8743322 11222222221111 1122333321 1 11 12333556677788889999
Q ss_pred EEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+.+...-+-+.. . .. .++.++++....++..+++|
T Consensus 169 ~ii~~~i~~~g~~----~-g~---d~~~i~~~~~~~~ipvia~G 204 (253)
T PRK02083 169 EILLTSMDRDGTK----N-GY---DLELTRAVSDAVNVPVIASG 204 (253)
T ss_pred EEEEcCCcCCCCC----C-Cc---CHHHHHHHHhhCCCCEEEEC
Confidence 8766322111100 0 11 24445555555566666665
No 207
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.69 E-value=0.98 Score=45.60 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=86.3
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCCC-----C-CC----HHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDF-----R-GD----LRA 198 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~~-----~-~~----~e~ 198 (328)
+.+.+++..+++.+.+.|+..+-+.||...+-. ..-.+.=.+.++.+++..|+..+..+..+. . .. +..
T Consensus 22 r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 22 RMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 445678889999999999999988876532111 000122245677777777777766444211 1 01 357
Q ss_pred HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHHHhCC
Q 020304 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADLRSID 276 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l~~l~ 276 (328)
++..++.|+|.+.+.. .+ .+.+.....++.+++ .|..+...+ +.....|.+.+.+.++.+.++|
T Consensus 102 v~~a~~~Gidv~Rifd----~l--------nd~~n~~~~i~~~k~--~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G 167 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD----AL--------NDARNLKVAIDAIKS--HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG 167 (596)
T ss_pred HHHHHHcCCCEEEEcc----cC--------cchHHHHHHHHHHHH--cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 8888999999887632 11 133444456666677 777655443 2223677777777777777777
Q ss_pred CCEEee
Q 020304 277 VDILTL 282 (328)
Q Consensus 277 ~~~i~i 282 (328)
++.+.+
T Consensus 168 ad~I~I 173 (596)
T PRK14042 168 CDSIAI 173 (596)
T ss_pred CCEEEe
Confidence 776665
No 208
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=94.60 E-value=5.5 Score=39.80 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeC----CCC-CCHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTS----DFR-GDLRAVETLV 203 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~----~~~-~~~e~l~~L~ 203 (328)
..+.++-.++++.+.+.|++.|-+. .+ ..+. .. .+.++.|.+.. .+..+..+.. +.. ..+..++.+.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G--~p-~~s~---~d-~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~ 91 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGG--WP-GANP---KD-VQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALI 91 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CC-CCCh---HH-HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHh
Confidence 3566777899999999999988762 22 2221 22 33455554432 2345544431 111 1256789999
Q ss_pred HcCCcEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEE---EEcCCCHHHHHHHHHHHHhCCCC
Q 020304 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i---vGlgEt~e~~~~~l~~l~~l~~~ 278 (328)
++|.+.+.+-.-+.+.. ....+ ......+...++++.+++ .|+.|..+.. -|.--+++.+.+.++.+.+.|++
T Consensus 92 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~--~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad 169 (526)
T TIGR00977 92 KAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKR--QGDEVIYDAEHFFDGYKANPEYALATLATAQQAGAD 169 (526)
T ss_pred cCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCC
Confidence 99999988866555542 22221 011233445566888899 8988754333 34335678888999999999999
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 170 ~i~i 173 (526)
T TIGR00977 170 WLVL 173 (526)
T ss_pred eEEE
Confidence 8776
No 209
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.59 E-value=2.5 Score=37.18 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=72.4
Q ss_pred CCchHHHHHHHHHCCCcEEEEE--ecc-CCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLT--SVD-RDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~--gg~-~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
...+.++++.+.+.|++.+++- .|. .|.+. .=.++++.+++..++ +.++..... .+..++.++++|.
T Consensus 15 ~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t-----fg~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~ga 86 (223)
T PRK08745 15 FARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT-----IGPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGA 86 (223)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCccCCCcc-----cCHHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCC
Confidence 3456788999999999988763 332 12222 223456666654222 455554432 4578999999999
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+.+.+..|+.. ...++++.+|+ .|++ +++.+..+-..+.+...+. .+|.+-++
T Consensus 87 d~I~~H~Ea~~--------------~~~~~l~~Ir~--~g~k--~GlalnP~T~~~~i~~~l~-----~vD~VlvM 139 (223)
T PRK08745 87 TTISFHPEASR--------------HVHRTIQLIKS--HGCQ--AGLVLNPATPVDILDWVLP-----ELDLVLVM 139 (223)
T ss_pred CEEEEcccCcc--------------cHHHHHHHHHH--CCCc--eeEEeCCCCCHHHHHHHHh-----hcCEEEEE
Confidence 99999887521 13356666777 7864 5555555545555544432 35555553
No 210
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.58 E-value=3 Score=36.66 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=65.3
Q ss_pred CchHHHHHHHHHCCCcEEEEE--ecc-CCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 134 MEPENTAKAIASWGVDYIVLT--SVD-RDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~--gg~-~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
..+.++++.+.+.|++.+++- .|. .|.+. .=.++++.+++..++ +.++..... .+..++.++++|.+
T Consensus 12 ~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t-----fg~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 12 ARLGEDVEKVLAAGADVVHFDVMDNHYVPNLT-----FGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCcccCccc-----cCHHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 456788889999999987663 332 12222 223456666654112 455554431 45789999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHH
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKE 267 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~ 267 (328)
.+.+..|+.+ +..++++.+|+ .|++ +++.+..+-..+.+..
T Consensus 84 ~i~~H~Ea~~--------------~~~~~l~~ik~--~g~k--~GlalnP~Tp~~~i~~ 124 (220)
T PRK08883 84 MITFHVEASE--------------HVDRTLQLIKE--HGCQ--AGVVLNPATPLHHLEY 124 (220)
T ss_pred EEEEcccCcc--------------cHHHHHHHHHH--cCCc--EEEEeCCCCCHHHHHH
Confidence 9999888521 23345566677 7875 4455554444444443
No 211
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.57 E-value=5.3 Score=39.89 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=88.6
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeC----CCC-CCHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTS----DFR-GDLRAVETLV 203 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~----~~~-~~~e~l~~L~ 203 (328)
..+.++..++++.+.+.|++.|-+. .+ .... .. .+.++.+.+.. .+..+..+.. +.. .++..++.+.
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG--~p-~as~---~d-~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~ 95 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGG--WP-GSNP---KD-TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALL 95 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc--CC-cCCh---hH-HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHH
Confidence 4566788899999999999988773 22 1221 11 34455555422 2344443331 111 1356789999
Q ss_pred HcCCcEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEE---EEcCCCHHHHHHHHHHHHhCCCC
Q 020304 204 HSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIM---LGLGESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i---vGlgEt~e~~~~~l~~l~~l~~~ 278 (328)
++|.+.+.+.+-+.+-. ....+ ......+...++++.+++ .|+.+..+.. =|.-.+.+-+.+.++.+.+.|++
T Consensus 96 ~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~--~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad 173 (524)
T PRK12344 96 DAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA--HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 173 (524)
T ss_pred hCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEccccccccccCCHHHHHHHHHHHHhCCCC
Confidence 99999988866555432 22221 112244566678888899 9988765433 12223466677888889999999
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 174 ~i~l 177 (524)
T PRK12344 174 WVVL 177 (524)
T ss_pred eEEE
Confidence 8766
No 212
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=94.52 E-value=3.3 Score=41.45 Aligned_cols=176 Identities=10% Similarity=0.015 Sum_probs=103.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH-----------HHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL-----------RAV 199 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~-----------e~l 199 (328)
++.-++.+.++.+.+.|+++++|..-+...-.....+...++++.+.+. ..+.+.+ .+++.+. |.+
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~-~~ip~~v--GGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN-VFVPLTV--GGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh-CCCCEEE--cCCccccccccccccchHHHH
Confidence 4556788999999999999999875443111111235577888888775 2455543 3344342 889
Q ss_pred HHHHHcCCcEEeechhhHHH---HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe-----------------------
Q 020304 200 ETLVHSGLDVFAHNIETVKR---LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS----------------------- 253 (328)
Q Consensus 200 ~~L~~aG~~~i~~~~et~~~---~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~----------------------- 253 (328)
+.+-++|++++.+|-..+.. ++..- +..+++-+.++.+..-+ .-+-++.+
T Consensus 341 ~~~l~~GadkV~i~s~Av~~~~~~~~~~--~~~~p~~i~~~~~~fg~--q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 341 SEYFRSGADKISIGSDAVYAAEEYIASG--VKTGKTSIEQISRVYGN--QAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHcCCCEEEEChHHHhChhhhhccc--cccCHHHHHHHHHHcCC--ceEEEEEecCcCcccCccccccccccccccC
Confidence 99999999999997655542 33211 23344444444333211 10222222
Q ss_pred -----------EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 254 -----------IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 254 -----------~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
.+-|- ..|.-+..+.++.+.++|+..+-+...-+. |.. --.++.+++++...++..++
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~---------G~d~~l~~~v~~~~~ipvia 487 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGK---------GFDIELVKLVSDAVTIPVIA 487 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccccc---------CcCHHHHHHHHhhCCCCEEE
Confidence 12222 335567888899999999998777422221 221 11245555666667777777
Q ss_pred ec
Q 020304 321 SG 322 (328)
Q Consensus 321 ~g 322 (328)
+|
T Consensus 488 sG 489 (538)
T PLN02617 488 SS 489 (538)
T ss_pred EC
Confidence 75
No 213
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=94.52 E-value=3.2 Score=41.09 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC---------cEEEEEeCCCCCCHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---------IMVECLTSDFRGDLRAVET 201 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~---------~~i~~~t~~~~~~~e~l~~ 201 (328)
.+.++-.++++.+.+.|++.|-+. . |... +.-.+.++.|.+..+. ..+..+... .++-++.
T Consensus 103 fs~eeKi~Ia~~L~~~GVd~IEvG--~-Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~---~~~dId~ 172 (503)
T PLN03228 103 LTPPQKLEIARQLAKLRVDIMEVG--F-PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC---KKRDIEA 172 (503)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHhcccccccccccceEEeeeccc---CHhhHHH
Confidence 456778899999999999987763 2 3333 3334446666543211 122222221 2333344
Q ss_pred ----HHHcCCcEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc---CCCH-HHHHHHHHH
Q 020304 202 ----LVHSGLDVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL---GESD-DDLKEAMAD 271 (328)
Q Consensus 202 ----L~~aG~~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl---gEt~-e~~~~~l~~ 271 (328)
++++|.+++.+.+-+.+.. ....+ ......+...++++.+++ .|+.. +.+|. +.++ +-+.+.++.
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~--~G~~~---v~f~~EDa~Rtd~efl~~~~~~ 247 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKS--LGFHD---IQFGCEDGGRSDKEFLCKILGE 247 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCce---EEeccccccccCHHHHHHHHHH
Confidence 4444778888765555542 22222 112234556778888899 88751 34444 3444 445788888
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++.+.+
T Consensus 248 a~~~Gad~I~l 258 (503)
T PLN03228 248 AIKAGATSVGI 258 (503)
T ss_pred HHhcCCCEEEE
Confidence 99999998766
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.34 E-value=0.64 Score=45.73 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=92.5
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.+.++.+.+.|++-+++-..+. . .....++++.|++.+|++.+.+ +...+.+....|.++|+|.+.++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g--~----~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG--H----QVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC--C----cHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 4667888999999999988854442 2 3889999999999988887755 44469999999999999999875
Q ss_pred hhhHHH-HHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETVKR-LQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~~~-~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.-...- ..+.+.+ ...+..-.+++.+.+++ .|+++.++ |=-.+..|+.+.+ .+|.+.+.+..++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 543221 1122221 12355667777777788 67663322 2235666665544 4888888887665
No 215
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.27 E-value=0.55 Score=46.20 Aligned_cols=133 Identities=18% Similarity=0.252 Sum_probs=88.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.+.++.+.+.|++-+.+-..+.+ -....++++.||+.+|++.+.+ +...+.|..+.|.++|+|.+.++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a---gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA---GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe---eccCCHHHHHHHHHcCCCEEEEC
Confidence 45678888999999999888544432 2789999999999999887754 22248899999999999999876
Q ss_pred hhhHH----HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETVK----RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~~----~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+-+.. +.+..+. .-.+.-+.+..+.+++ .|+++.++ |=-.+..++.+.+. +|++.+.+..++
T Consensus 297 ig~gsictt~~~~~~~--~p~~~av~~~~~~~~~--~~~~via~---ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVG--RPQFSAVLECAAAARE--LGAHVWAD---GGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCc--hhHHHHHHHHHHHHHh--cCCcEEec---CCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 65522 2222111 1244555555555566 67664322 32356666655543 688877776555
No 216
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.27 E-value=0.59 Score=43.44 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=84.7
Q ss_pred HHHHHHHHH--CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIAS--WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~--~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++++.+ .|++.+++-..+. . .+...+.++.||+.+|++.+.+ +...+.|..+.|.++|.|.+-+++
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhG--h----s~~~i~~ik~ik~~~P~~~vIa---GNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANG--Y----SEHFVQFVAKAREAWPDKTICA---GNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC--c----HHHHHHHHHHHHHhCCCCcEEE---ecccCHHHHHHHHHcCCCEEEEcc
Confidence 455566665 5889888865443 2 4899999999999999987743 233589999999999999988755
Q ss_pred hhHHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~~-~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-...- ..+.+.+-+ -...-+.++-+.+++ .|.++.++-=+ .+.-|+.+.+ ..|.+.+.+..++
T Consensus 181 GpGSiCtTr~vtGvG~PQltAV~~~a~~a~~--~gvpiIADGGi---~~sGDI~KAl----aaGAd~VMlGsll 245 (346)
T PRK05096 181 GPGSVCTTRVKTGVGYPQLSAVIECADAAHG--LGGQIVSDGGC---TVPGDVAKAF----GGGADFVMLGGML 245 (346)
T ss_pred cCCccccCccccccChhHHHHHHHHHHHHHH--cCCCEEecCCc---ccccHHHHHH----HcCCCEEEeChhh
Confidence 43221 122222111 134556677777777 78775554211 2333444333 3788888887665
No 217
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.26 E-value=4.2 Score=37.12 Aligned_cols=169 Identities=16% Similarity=0.107 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+.+..++....+.. .+.+. +.-|.-.+.+.++...++|++.+.+
T Consensus 28 ~e~~~avi~aAe~~~~Pvii~~~~~~~~~~--~~~~~~~~~~~~a~~~-~vpv~-lHlDH~~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 28 MEMVMGAIKAAEELNSPIILQIAEVRLNHS--PLHLIGPLMVAAAKQA-KVPVA-VHFDHGMTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhccC--ChHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEEEE
Confidence 455566777777777554433332211222 3567777777665553 45553 3445545789999999999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-EEE-------c-CCCHHHHHHHHHHHHhCCCCEEee-
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLG-------L-GESDDDLKEAMADLRSIDVDILTL- 282 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-ivG-------l-gEt~e~~~~~l~~l~~l~~~~i~i- 282 (328)
....++. ....+...+..+.+++ .|+.+.+.+ -+| . |.+..+..+..++.++.|+|.+.+
T Consensus 104 d~s~~~~--------~eni~~t~~v~~~a~~--~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAva 173 (281)
T PRK06806 104 DGSHLPL--------EENIQKTKEIVELAKQ--YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVA 173 (281)
T ss_pred cCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEc
Confidence 5322210 1123444566667777 888766543 233 1 222335556677777889999888
Q ss_pred -ecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 283 -GQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 283 -~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+. .+|. + .-++-.++.|+++....++..|..|
T Consensus 174 iG~~-hg~~---~---~~~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 174 IGNA-HGMY---N---GDPNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred cCCC-CCCC---C---CCCccCHHHHHHHHHhcCCCEEEEC
Confidence 321 1222 1 1123446777777777788888877
No 218
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.07 E-value=2.9 Score=37.32 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEeechh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~~~~e 215 (328)
.+.++.+++.|++.|+|.--+++.- -+.+.+.++++..... .+.++..- +...+ .+.++.|.+.|++++.-+
T Consensus 76 ~~di~~~~~~GadGvV~G~L~~dg~--vD~~~~~~Li~~a~~~--~vTFHRAf-D~~~d~~~al~~l~~lG~~rILTS-- 148 (248)
T PRK11572 76 LEDIATVRELGFPGLVTGVLDVDGH--VDMPRMRKIMAAAGPL--AVTFHRAF-DMCANPLNALKQLADLGVARILTS-- 148 (248)
T ss_pred HHHHHHHHHcCCCEEEEeeECCCCC--cCHHHHHHHHHHhcCC--ceEEechh-hccCCHHHHHHHHHHcCCCEEECC--
Confidence 5677788899999998854443212 2357777777766432 23333211 22224 578999999999998742
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 216 t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+...+..+-++.++.+.+...|. + +|.|=|=+.+.+.+. .+.|+..++.+
T Consensus 149 ----------Gg~~~a~~g~~~L~~lv~~a~~~-~---Im~GgGV~~~Nv~~l----~~tG~~~~H~s 198 (248)
T PRK11572 149 ----------GQQQDAEQGLSLIMELIAASDGP-I---IMAGAGVRLSNLHKF----LDAGVREVHSS 198 (248)
T ss_pred ----------CCCCCHHHHHHHHHHHHHhcCCC-E---EEeCCCCCHHHHHHH----HHcCCCEEeeC
Confidence 11234556666666665533442 1 888889999988774 25899888874
No 219
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.00 E-value=4.2 Score=36.08 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=94.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.+.+.+.++...+.|++.+++..-+.- . .+ ...=.++++.|.+.. +..+.+ .+++.+.+.++.|.++|++++
T Consensus 28 ~y~~~P~~~a~~~~~~Ga~~lHlVDLdgA-~-~g-~~~n~~~i~~i~~~~-~~~vQv--GGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 28 VYSDDPLEVAKKWSDQGAEWLHLVDLDGA-K-AG-GPRNLEAIKEILEAT-DVPVQV--GGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred EecCCHHHHHHHHHHcCCcEEEEeecccc-c-cC-CcccHHHHHHHHHhC-CCCEEe--eCCcCCHHHHHHHHHCCCCEE
Confidence 35567889999999999998888643211 1 01 122234566666553 445554 566679999999999999999
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEe------EEEEc-CCCHHHHHHHHHHHHhCCCCEEe
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSS------IMLGL-GESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~------~ivGl-gEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
.++--.. .+++...+.++. .|-. +..+ .+=|- ..|.-+..+.++.+.+.|+..+-
T Consensus 102 iiGt~av-----------~~p~~v~~~~~~-----~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii 165 (241)
T COG0106 102 IIGTAAV-----------KNPDLVKELCEE-----YGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHIL 165 (241)
T ss_pred EEeccee-----------cCHHHHHHHHHH-----cCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEE
Confidence 8864221 233433343332 2211 2221 12344 34444788889999999998766
Q ss_pred eecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 282 LGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 282 i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+....+ ...++-..++.+++++........++|
T Consensus 166 ~TdI~~--------DGtl~G~n~~l~~~l~~~~~ipviaSG 198 (241)
T COG0106 166 YTDISR--------DGTLSGPNVDLVKELAEAVDIPVIASG 198 (241)
T ss_pred EEeccc--------ccccCCCCHHHHHHHHHHhCcCEEEec
Confidence 532221 112222224555666666677777775
No 220
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.97 E-value=3.1 Score=37.94 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCC--CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRG--DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~--~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
.+.+.+.++..++..++..+.+...+... -.+.++.+.++|++.+-+|...-+... .+.-..+.+...+.++.+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG--GRQLGQDPEAVANLLKAVKA 159 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHHHH
Confidence 56666666655543224343332222111 136688888889998888664332111 00012356777788888877
Q ss_pred hCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC------C--CCCcccCC-----CCCHHHHHHHH
Q 020304 244 SKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP------T--PLHLTVKE-----YVTPEKFDFWK 308 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P------T--p~~~~~~~-----~~~~~~~~~l~ 308 (328)
.. ++. +++.+ +.+.++..+.++.+.+.|++.+.+.+.... + +....... .+.+..++.++
T Consensus 160 ~~-~~p----v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~ 234 (289)
T cd02810 160 AV-DIP----LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVA 234 (289)
T ss_pred cc-CCC----EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHH
Confidence 21 443 34444 577889999999999999999888544311 0 00000011 12233456667
Q ss_pred HHHHhc--CCceeeec
Q 020304 309 AYGESI--GFRYVASG 322 (328)
Q Consensus 309 ~~~~~~--G~~~~~~g 322 (328)
++.... ++..+..|
T Consensus 235 ~i~~~~~~~ipiia~G 250 (289)
T cd02810 235 RLAARLQLDIPIIGVG 250 (289)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 777766 67777776
No 221
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.97 E-value=2.1 Score=38.51 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=94.5
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEec-cCCCCC--C--CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIP--D--GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~--~--~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..+++++.+.+++..+.|+.-|-+.|. ..|... + .+.+++..+++.+++.. ++.+++-| .+++.++.-.+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT----~~~~vi~~al~ 93 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDT----YRAEVARAALE 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CCHHHHHHHHH
Confidence 356678889999999999998877321 112111 1 12346778888887653 55555433 25677776667
Q ss_pred cCCcEEee-chh----hHHHHHhh----h----cCCCCC----------HH----HHHHHHHHHHHhCCCCe---EEEeE
Q 020304 205 SGLDVFAH-NIE----TVKRLQRI----V----RDPRAG----------YE----QSLEVLKHAKLSKKGLI---TKSSI 254 (328)
Q Consensus 205 aG~~~i~~-~~e----t~~~~~~~----~----~~~~~~----------~~----~~l~~i~~~~~~~~Gi~---v~~~~ 254 (328)
+|.+.++. +.+ ..+-+.+. + .+...+ .+ ...+.++.+.+ .|+. +..+-
T Consensus 94 ~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~Gi~~~~iilDP 171 (257)
T TIGR01496 94 AGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVA--AGVAAERIILDP 171 (257)
T ss_pred cCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH--cCCCHHHEEEEC
Confidence 78777664 222 11111110 0 000011 12 23455666778 9993 55555
Q ss_pred EEEcCCCHHHHHHHHHHHHh---CCCC-EEeeec--ccC-CCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 255 MLGLGESDDDLKEAMADLRS---IDVD-ILTLGQ--YLQ-PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 255 ivGlgEt~e~~~~~l~~l~~---l~~~-~i~i~~--~l~-PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
.+|++.|.++-.++++.++. ++.. .+++++ |+. .+.+ ...+. ...-..+..++.+.|...+-.|.
T Consensus 172 g~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~--~~~~r--~~~t~~~~~~a~~~Ga~iiR~Hd 243 (257)
T TIGR01496 172 GIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGT--PPEER--LEGTLAASAYAVQKGADIVRVHD 243 (257)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCC--Chhhh--hHHHHHHHHHHHHcCCCEEEeCC
Confidence 56786677665555555544 4432 233321 110 0111 00010 01112344567788888877663
No 222
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.88 E-value=0.8 Score=42.57 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=81.7
Q ss_pred HHHHHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++.+.+. +++.+++-..+. . .+...+.++.||+.+|+..+.. +...++|..+.|.++|+|.+.+++
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhG--h----s~~~i~~ik~ir~~~p~~~via---GNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANG--Y----SEHFVEFVKLVREAFPEHTIMA---GNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC--c----HHHHHHHHHHHHhhCCCCeEEE---ecccCHHHHHHHHHcCCCEEEEcc
Confidence 4566666665 488888854443 2 4889999999999999876643 233689999999999999988764
Q ss_pred hhHHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~~-~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-...- ..+.+.+-+ ....-..++.+.++. .|+++.++- |+ .+.-|+.+.+ .+|.+.+.+...+
T Consensus 180 GpGSicttR~~~Gvg~pqltAv~~~a~aa~~--~~v~VIaDG--GI-r~~gDI~KAL----A~GAd~VMlG~ll 244 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLSAVIECADAAHG--LKGHIISDG--GC-TCPGDVAKAF----GAGADFVMLGGMF 244 (343)
T ss_pred cCCCcccCceeCCCCcCHHHHHHHHHHHhcc--CCCeEEEcC--Cc-CchhHHHHHH----HcCCCEEEECHhh
Confidence 33221 122222112 245555566666555 566543331 21 2334444333 3788888776554
No 223
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.66 E-value=3.3 Score=36.21 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
+.++....++.+.+.|++-+-+|--. +...+.++.+++.++ ++.+- .+..++.+.++...++|.+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~---------~~a~~~i~~l~~~~~~~p~~~vG---aGTV~~~~~~~~a~~aGA~ 90 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTN---------PFASEVIKELVELYKDDPEVLIG---AGTVLDAVTARLAILAGAQ 90 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC---------ccHHHHHHHHHHHcCCCCCeEEe---eeeCCCHHHHHHHHHcCCC
Confidence 45677889999999999977665211 335677888887763 45443 3455699999999999988
Q ss_pred EEe
Q 020304 209 VFA 211 (328)
Q Consensus 209 ~i~ 211 (328)
.+-
T Consensus 91 Fiv 93 (213)
T PRK06552 91 FIV 93 (213)
T ss_pred EEE
Confidence 654
No 224
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.65 E-value=4.9 Score=35.83 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=91.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++++++..-+.. .. +...-.++++.|.+.. +.+. ..+++.+.+.++.+-++|++++.
T Consensus 28 ~~~dP~~~A~~~~~~ga~~lhivDLd~a-~~--g~~~n~~~i~~i~~~~--~~v~--vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 28 YEKDPAELVEKLIEEGFTLIHVVDLSKA-IE--NSVENLPVLEKLSEFA--EHIQ--IGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEECCCc-cc--CCcchHHHHHHHHhhc--CcEE--EecCCCCHHHHHHHHHCCCCEEE
Confidence 3467889999999999999999754421 11 1234456777776653 3343 24555689999999999999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE----E--EEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI----M--LGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~----i--vGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+|-++++. .+ +++.+... . ..+.++.++ + -|. ..|.-+..+.+..+.++|+..+-+..
T Consensus 101 igT~a~~~-----------p~-~l~~~~~~-~--~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~td 165 (241)
T PRK14114 101 VSSKVLED-----------PS-FLKFLKEI-D--VEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTE 165 (241)
T ss_pred ECchhhCC-----------HH-HHHHHHHh-C--CCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 87655421 11 11111110 0 112222222 1 122 23555677888899999998876642
Q ss_pred ccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 285 YLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 285 ~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.-+. |-. --.++.+++++...+...+++|
T Consensus 166 I~rdGt~~---------G~d~el~~~l~~~~~~pviasG 195 (241)
T PRK14114 166 IEKDGTLQ---------EHDFSLTRKIAIEAEVKVFAAG 195 (241)
T ss_pred echhhcCC---------CcCHHHHHHHHHHCCCCEEEEC
Confidence 2211 211 1124445555555566666665
No 225
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=93.55 E-value=2.6 Score=39.69 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=88.3
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++-.+.++.+.+.|++-+++.+.+. . .++..+.++.+|+.+|++.+.+ .| ..+.+..+.|.++|+|.+.++
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g--~----s~~~~~~ik~ik~~~~~~~via-GN--V~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHG--H----SEHVIDMIKKIKKKFPDVPVIA-GN--VVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SST--T----SHHHHHHHHHHHHHSTTSEEEE-EE--E-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEccccCc--c----HHHHHHHHHHHHHhCCCceEEe-cc--cCCHHHHHHHHHcCCCEEEEe
Confidence 3446778888889999998875553 2 3889999999999999888854 23 248999999999999999986
Q ss_pred hhhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+-.. .+...-+. .-...-+.++.+.+++ .|+++.++- | -.+.-|+.+.+ .+|.+.+.+..++
T Consensus 178 iGpGsiCtTr~v~GvG--~PQ~tAv~~~a~~a~~--~~v~iIADG--G-i~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 178 IGPGSICTTREVTGVG--VPQLTAVYECAEAARD--YGVPIIADG--G-IRTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSSSTTBHHHHHHSBS--CTHHHHHHHHHHHHHC--TTSEEEEES--S--SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred ccCCcccccccccccC--CcHHHHHHHHHHHhhh--ccCceeecC--C-cCcccceeeee----eecccceeechhh
Confidence 5432 22222111 2245667788888888 787765552 1 23555655443 5789999887666
No 226
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.54 E-value=5.1 Score=35.54 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=75.7
Q ss_pred CchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 134 MEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.++.+.++.+.+ .|++++++..-+.. .. +.+.-.++++.|.+. .++.+.+ .+++.+.|.++.+.++|++++.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a--~~-~~~~n~~~I~~i~~~-~~~pi~v--GGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGA--KA-QHAREFDYIKSLRRL-TTKDIEV--GGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccc--cc-CCcchHHHHHHHHhh-cCCeEEE--cCCcCCHHHHHHHHHCCCCEEEE
Confidence 466778888888 69999998753321 11 123345677777664 3566543 55666899999999999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeE----E--EEc-CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSI----M--LGL-GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~----i--vGl-gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
|-++++. ++-..+.. +.|+ .+-++.+. + -|. ..+.-+..+.+..+.++++..+-+
T Consensus 105 gt~a~~~-----------~~~l~~~~----~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 105 GTKGIQD-----------TDWLKEMA----HTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred CchHhcC-----------HHHHHHHH----HHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 7655432 11111221 1111 12233332 1 122 234445677778888888876555
No 227
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=93.38 E-value=1.6 Score=42.15 Aligned_cols=143 Identities=21% Similarity=0.198 Sum_probs=91.7
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-CCCCHHHHHHHHHcCCc
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-FRGDLRAVETLVHSGLD 208 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-~~~~~e~l~~L~~aG~~ 208 (328)
..+.++-.++++.+.+.|++.|-... + ..+ +.-.+.++.+.... +..+...... ....++.++.+.++|++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~--p-~~s----~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~ea~~~a~~~ 91 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGF--P-VAS----PGDFEFVRAIAEKA-GLFICALIAALARAIKRDIEALLEAGVD 91 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeC--C-cCC----hhhHHHHHHHHHhc-CcccchhhhhhHHhHHhhHHHHHhCCCC
Confidence 35667788999999999999887642 2 222 33445555555321 2211111111 11135689999999999
Q ss_pred EEeechhhHHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 209 VFAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 209 ~i~~~~et~~~-~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++.+-..+.+- +...++ ......+...++++.+++ .|+.+..+..-...-..+.+.+.++.+.+.|++.+.+
T Consensus 92 ~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~--~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 92 RIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD--HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 98875555543 222221 112345667788888999 9988776555555677888889999999888988877
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=93.32 E-value=1.1 Score=38.69 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=83.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+...+.++++.+.+.|+..+++-=-+....+. ...=.++++.|++. ++ +.++..+.+ ....++.++++|.+.
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn--~~~g~~~i~~i~~~-~~~~~DvHLMv~~---P~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN--LTFGPDIIKAIRKI-TDLPLDVHLMVEN---PERYIEEFAEAGADY 83 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS--B-B-HHHHHHHHTT-SSSEEEEEEESSS---GGGHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCc--ccCCHHHHHHHhhc-CCCcEEEEeeecc---HHHHHHHHHhcCCCE
Confidence 34567889999999999977663222111221 12334567777765 34 444554432 357999999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCC
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPT 289 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PT 289 (328)
+.+..|+.+ . ..++++.+++ .|+.+ ++.+..+...+.+.. ++. .+|.+.++ -..|
T Consensus 84 i~~H~E~~~-----------~---~~~~i~~ik~--~g~k~--GialnP~T~~~~~~~---~l~--~vD~VlvM-sV~P- 138 (201)
T PF00834_consen 84 ITFHAEATE-----------D---PKETIKYIKE--AGIKA--GIALNPETPVEELEP---YLD--QVDMVLVM-SVEP- 138 (201)
T ss_dssp EEEEGGGTT-----------T---HHHHHHHHHH--TTSEE--EEEE-TTS-GGGGTT---TGC--CSSEEEEE-SS-T-
T ss_pred EEEcccchh-----------C---HHHHHHHHHH--hCCCE--EEEEECCCCchHHHH---Hhh--hcCEEEEE-EecC-
Confidence 999887321 2 2356677778 88864 455554443333322 222 47888775 3345
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcCC
Q 020304 290 PLHLTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 290 p~~~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
...-+....-.-+...+++++..+.|+
T Consensus 139 G~~Gq~f~~~~~~KI~~l~~~~~~~~~ 165 (201)
T PF00834_consen 139 GFGGQKFIPEVLEKIRELRKLIPENGL 165 (201)
T ss_dssp TTSSB--HGGHHHHHHHHHHHHHHHTC
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCC
Confidence 111111111123445666666666553
No 229
>PRK15452 putative protease; Provisional
Probab=93.15 E-value=8.7 Score=37.51 Aligned_cols=74 Identities=8% Similarity=0.057 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCC----CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH------HHHHHHHHcC
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL------RAVETLVHSG 206 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l----~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~------e~l~~L~~aG 206 (328)
.+.++.+.+.|++.|++.+.. ..+ .....+.+.+.++..++. +..+-+.+|....+. +.++.+.++|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~-~~~R~~~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPR-YSLRVRNNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCc-cchhhhccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 567788889999999995432 111 011247788888888877 455544445443333 3378888999
Q ss_pred CcEEeec
Q 020304 207 LDVFAHN 213 (328)
Q Consensus 207 ~~~i~~~ 213 (328)
+|.+.++
T Consensus 90 vDgvIV~ 96 (443)
T PRK15452 90 PDALIMS 96 (443)
T ss_pred CCEEEEc
Confidence 9998873
No 230
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.04 E-value=2.5 Score=36.94 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++ +.. +.-.+.++.+++.+|++.+-+ +..++++.++...++|.+.+.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEit------l~~---~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVT------LRT---PAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cCC---ccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEEE
Confidence 46778899999999999977776 111 346678888988888866543 445689999999999998775
Q ss_pred e---chhhHHH
Q 020304 212 H---NIETVKR 219 (328)
Q Consensus 212 ~---~~et~~~ 219 (328)
- +.++.+.
T Consensus 93 sP~~~~~vi~~ 103 (212)
T PRK05718 93 SPGLTPPLLKA 103 (212)
T ss_pred CCCCCHHHHHH
Confidence 3 4455443
No 231
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.85 E-value=0.56 Score=39.46 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+-. +. ++.+.++++.++...+.+.+++ +++ ++.+.+..+++.|+|.+.++-
T Consensus 90 ~ee~~ea~~~g~d~I~lD~-----~~---~~~~~~~v~~l~~~~~~v~ie~--SGG-I~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDN-----MS---PEDLKEAVEELRELNPRVKIEA--SGG-ITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES------C---HHHHHHHHHHHHHHTTTSEEEE--ESS-SSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHHhCCCEEEecC-----cC---HHHHHHHHHHHhhcCCcEEEEE--ECC-CCHHHHHHHHhcCCCEEEcCh
Confidence 5678888889999888842 22 5899999999988878877765 344 388999999999999998764
No 232
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=92.82 E-value=4.9 Score=35.53 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|++++++..-+.. .. .+.-.++++.+.+.. ++.+.+ .++..+.|.++.+.++|++++.+
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~-~~---~~~n~~~i~~i~~~~-~~~v~v--gGGir~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAI-MG---RGDNDEAIRELAAAW-PLGLWV--DGGIRSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccc-cC---CCccHHHHHHHHHhC-CCCEEE--ecCcCCHHHHHHHHHcCCCeEEE
Confidence 457889999999999999988654321 11 233355677766542 345543 44555889999999999999988
Q ss_pred chhhH
Q 020304 213 NIETV 217 (328)
Q Consensus 213 ~~et~ 217 (328)
+-+++
T Consensus 107 gt~~~ 111 (233)
T cd04723 107 GTETL 111 (233)
T ss_pred cceec
Confidence 76554
No 233
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.77 E-value=4.3 Score=34.21 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCC------CCCHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDF------RGDLRAVETLV 203 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~------~~~~e~l~~L~ 203 (328)
+.+.+.+.++.+.+.|++.+.+.| ++++.+++..++ +.+.+..... ....+.++..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 445667888899999999888765 334444433332 4443322221 11347788899
Q ss_pred HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhC-CCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK-KGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++|.+.+.+..- ++.. +..+.+...+.++.+.+.. .++.+....+.+.--+.+++.+..+.+.+.|++.+-.
T Consensus 76 ~~Gad~i~v~~~----~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVVIN----IGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEecc----HHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 999999887431 2211 1123566666666666521 3777655555433236777888777788889988766
No 234
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.77 E-value=7.2 Score=35.15 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHHH
Q 020304 228 RAGYEQSLEVLKHAKL 243 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~ 243 (328)
+.+.++.++.++.+++
T Consensus 70 G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 70 GVTLADVFELVREIRE 85 (258)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4556666666666664
No 235
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=92.71 E-value=2.8 Score=37.80 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=8.1
Q ss_pred CCCHHHHHHHHHHHHH
Q 020304 228 RAGYEQSLEVLKHAKL 243 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~ 243 (328)
+.+.++.++.++.+++
T Consensus 68 G~~~~~~~~~~~~ir~ 83 (259)
T PF00290_consen 68 GFTLEKIFELVKEIRK 83 (259)
T ss_dssp T--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4555666666666553
No 236
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.58 E-value=3.6 Score=37.77 Aligned_cols=76 Identities=21% Similarity=0.147 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~ 276 (328)
..++.+.+.|++.+.++=.+.+- ...+.+++.+.++.+.+...| ...+|+|.|.+.++..+.++.++++|
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhC
Confidence 55667777788877763322221 134667777777766553233 12356666446667777777788888
Q ss_pred CCEEee
Q 020304 277 VDILTL 282 (328)
Q Consensus 277 ~~~i~i 282 (328)
++.+-+
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 876544
No 237
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.54 E-value=1.8 Score=39.41 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.|.++|++.+.++-.+.+- + ..+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.++++
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~-~------~lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGES-P------TLSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcch-h------hCCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 45666666777776654222221 1 24556666666666553222 12356666 45666777777777777
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 95 G~d~v~~ 101 (284)
T cd00950 95 GADAALV 101 (284)
T ss_pred CCCEEEE
Confidence 7776554
No 238
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=92.51 E-value=3.1 Score=36.40 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCcEEEE--EeccCCCCC-----CCcHHHHHHHHHHHHHhC----CCcEEEEEeCCCC-CCHHHHHHHHH
Q 020304 137 ENTAKAIASWGVDYIVL--TSVDRDDIP-----DGGSGHFARTVKAMKKQK----PDIMVECLTSDFR-GDLRAVETLVH 204 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l--~gg~~~~l~-----~~~~~~l~~li~~ik~~~----~~~~i~~~t~~~~-~~~e~l~~L~~ 204 (328)
++.++.+++.+++-+.+ .| +.+.+. +...+++.+.++.+++.+ |.+.+- ++-+.+ .+.+.++.|.+
T Consensus 100 E~~~eklk~~~vdvvsLDfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiG-L~~gki~~e~kaIdiL~~ 177 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIG-LDFGKIHGEFKAIDILVN 177 (275)
T ss_pred HHHHHHHHHhcCcEEEEeecC-ChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEE-eccCcccchHHHHHHHhc
Confidence 45566777777775544 33 222111 122467777788888763 222221 121221 25688999999
Q ss_pred cCCcEEeechhh---HHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 205 SGLDVFAHNIET---VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 205 aG~~~i~~~~et---~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
...|.+-+..=. ..+|.+ .+.-+.++.+++++.||+.|++ +++.+-|--.||..- +.=.++..+|+|.+.
T Consensus 178 ~~~DalVl~vliPtpGtkm~~---~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rv---k~d~~av~~gVd~It 250 (275)
T COG1856 178 YEPDALVLVVLIPTPGTKMGN---SPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRV---KLDKEAVLAGVDRIT 250 (275)
T ss_pred CCCCeEEEEEEecCCchhccC---CCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHH---HHHHHHHHcCCceee
Confidence 988887652211 123433 2356899999999999999999 666555543466544 445677788999887
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 251 ~ 251 (275)
T COG1856 251 F 251 (275)
T ss_pred c
Confidence 6
No 239
>PRK06801 hypothetical protein; Provisional
Probab=92.45 E-value=8.5 Score=35.24 Aligned_cols=171 Identities=16% Similarity=0.065 Sum_probs=97.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+ .+.+.+..+++.+.+.. .+.+. +.-|.-.+.+.++.-.++|++.+.+
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpV~-lHlDH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARH-DIPVV-LNLDHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCcEEEE
Confidence 45566777777777765443333222122 23678888888887763 55663 3445545788899999999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE--EeEEEEcCC----------CHHHHHHHHHHHHhCCCCEE
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK--SSIMLGLGE----------SDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~--~~~ivGlgE----------t~e~~~~~l~~l~~l~~~~i 280 (328)
.-..++ . ..+.+...+..+.++. .|+.|. .+.+=|-.+ ...+..+..+++++.|+|.+
T Consensus 104 D~S~l~-~-------eeNi~~t~~v~~~a~~--~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~L 173 (286)
T PRK06801 104 DGSTLE-Y-------EENVRQTREVVKMCHA--VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDAL 173 (286)
T ss_pred cCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEE
Confidence 432211 1 1123445567777788 787653 222212110 02234677888889999998
Q ss_pred eeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+ .+- ++..... ..++..++.++++....++..|.-|
T Consensus 174 Av-aiG-t~Hg~y~---~~~~l~~e~l~~i~~~~~~PLVlHG 210 (286)
T PRK06801 174 AV-AIG-NAHGKYK---GEPKLDFARLAAIHQQTGLPLVLHG 210 (286)
T ss_pred Ee-ccC-CCCCCCC---CCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 88 343 2211101 1112345566666666666666654
No 240
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=92.37 E-value=2 Score=37.74 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=102.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+.-++.+.++.+.+.|+++++|...+.. . .+.+...++++...+.. .+.+. ..+++.+.|-++.+-.+|.|.++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs--~-~gr~~~~~vv~r~A~~v-fiPlt--VGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS--S-EGRETMLDVVERVAEQV-FIPLT--VGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc--c-ccchhHHHHHHHHHhhc-eeeeE--ecCCcCCHHHHHHHHHcCCCeee
Confidence 4456789999999999999999765542 2 12467778888777652 34443 35666789999999999999999
Q ss_pred echhhHHH--H-HhhhcCCCCCHHHHHHHHHHHHHh---CCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 212 HNIETVKR--L-QRIVRDPRAGYEQSLEVLKHAKLS---KKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 212 ~~~et~~~--~-~~~~~~~~~~~~~~l~~i~~~~~~---~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+|-..+.. + .+... .+..+-++=+|..-+.. ..++.+ ++.|= ..|.-+..+..+...++|+..+-++.
T Consensus 102 INsaAv~~p~lI~~~a~--~FGsQciVvaIDakr~~~g~~~~~~v---~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts 176 (256)
T COG0107 102 INSAAVKDPELITEAAD--RFGSQCIVVAIDAKRVPDGENGWYEV---FTHGGREDTGLDAVEWAKEVEELGAGEILLTS 176 (256)
T ss_pred eChhHhcChHHHHHHHH--HhCCceEEEEEEeeeccCCCCCcEEE---EecCCCcCCCcCHHHHHHHHHHcCCceEEEee
Confidence 96544321 1 11110 11111111111111110 011222 23332 45666778888888999999988842
Q ss_pred ccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 285 YLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 285 ~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.-+. |... -.++.++.+.....+..+++|
T Consensus 177 mD~DGtk~G---------yDl~l~~~v~~~v~iPvIASG 206 (256)
T COG0107 177 MDRDGTKAG---------YDLELTRAVREAVNIPVIASG 206 (256)
T ss_pred ecccccccC---------cCHHHHHHHHHhCCCCEEecC
Confidence 2222 3332 125667777888888888876
No 241
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=92.35 E-value=2.6 Score=37.92 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEec-cCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..+.+++.+.+++..+.|+.-|-+.+. ..|... ..+.+++..+++.+++.. ++.+++-| .++++++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT----~~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDT----FRAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeC----CCHHHHHHHHH
Confidence 356678888999999999997777431 112111 112456777788887653 44454322 25666666666
Q ss_pred cCCcEEe-echhhH-HHHHhhhc------------CCCCC----------H----HHHHHHHHHHHHhCCCC---eEEEe
Q 020304 205 SGLDVFA-HNIETV-KRLQRIVR------------DPRAG----------Y----EQSLEVLKHAKLSKKGL---ITKSS 253 (328)
Q Consensus 205 aG~~~i~-~~~et~-~~~~~~~~------------~~~~~----------~----~~~l~~i~~~~~~~~Gi---~v~~~ 253 (328)
+|.+-++ ++.+.. +++.+.+. +...+ . +...+.++.+.+ .|+ .+..+
T Consensus 95 ~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~Gi~~~~Ii~D 172 (257)
T cd00739 95 AGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAES--AGVARNRIILD 172 (257)
T ss_pred hCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH--cCCCHHHEEEe
Confidence 6766554 222211 11111000 00000 1 224455666778 998 47777
Q ss_pred EEEEcCCCHHHHHHHH---HHHHhCCCC-EEeeec--ccC-CCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 254 IMLGLGESDDDLKEAM---ADLRSIDVD-ILTLGQ--YLQ-PTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~l---~~l~~l~~~-~i~i~~--~l~-PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
-.+|++.|.++-.+++ +.+++++.. .+++++ |+- -+... ..+.... -..+..++.+.|...+-.|
T Consensus 173 Pg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~--~~~r~~~--t~~~~~~~~~~Ga~iiRvH 244 (257)
T cd00739 173 PGIGFGKTPEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGRE--PKDRDWG--TLALSALAAANGADIVRVH 244 (257)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCC--ccccchh--HHHHHHHHHHcCCCEEEeC
Confidence 7778877755544444 445555543 234321 110 01111 1111111 1234456777888777665
No 242
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=92.03 E-value=7.5 Score=35.58 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=76.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEeCCCCCCHHHHHHHHHc--
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHS-- 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~---~~~~i~~~t~~~~~~~e~l~~L~~a-- 205 (328)
.+.++-.++++.+.+.|+++|-++ . |.+. +.-.++++.+.+.. ++..+..+.+. ..+.++...++
T Consensus 20 ~s~~~Ki~ia~~L~~~Gv~~IE~g--f-P~~~----~~e~e~~~~i~~~~~~~~~~~~~al~r~---~~~die~a~~~~~ 89 (284)
T cd07942 20 MSVEQKLRFFKLLVKIGFKEIEVG--F-PSAS----QTDFDFVRELIEEDLIPDDVTIQVLTQA---REDLIERTFEALR 89 (284)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--C-CCCC----HHHHHHHHHHHHccCCCCCCEEEEEcCC---ChhhHHHHHHHhC
Confidence 455667889999999999988774 2 4555 33346677774442 24566555543 34445666665
Q ss_pred CCc--EEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEc-C----CC-HHHHHHHHHHHHh
Q 020304 206 GLD--VFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL-G----ES-DDDLKEAMADLRS 274 (328)
Q Consensus 206 G~~--~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGl-g----Et-~e~~~~~l~~l~~ 274 (328)
|++ .+.+.+-+.+.. .+.++ ......+...+.++.+++ .|+. +++.+-+-+ + .+ .+.+.+.++.+.+
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~--~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 90 GAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKE--LAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--hcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 566655454442 22222 111233445567777888 7865 233344434 4 34 4557777777766
Q ss_pred C
Q 020304 275 I 275 (328)
Q Consensus 275 l 275 (328)
.
T Consensus 168 ~ 168 (284)
T cd07942 168 V 168 (284)
T ss_pred h
Confidence 6
No 243
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.90 E-value=8.5 Score=34.02 Aligned_cols=119 Identities=16% Similarity=0.239 Sum_probs=70.0
Q ss_pred CchHHHHHHHHHCCCcEEEEE--ecc-CCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 134 MEPENTAKAIASWGVDYIVLT--SVD-RDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~--gg~-~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++++++.+ |++.+++- .|. .|.+. .=.++++.+++.. --+.++..... .+..++.++++|.+.
T Consensus 15 ~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~t-----fg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~ 85 (229)
T PRK09722 15 LKFKEQIEFLNS-KADYFHIDIMDGHFVPNLT-----LSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADF 85 (229)
T ss_pred HHHHHHHHHHHh-CCCEEEEecccCccCCCcc-----cCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCE
Confidence 355678888877 88877663 232 12222 1234566666541 12445554432 457899999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+.+..|+.. ....++++.+|+ .|++ +++.+..+-..+.+...+. . +|.+-++
T Consensus 86 it~H~Ea~~-------------~~~~~~i~~Ik~--~G~k--aGlalnP~T~~~~l~~~l~---~--vD~VLvM 137 (229)
T PRK09722 86 ITLHPETIN-------------GQAFRLIDEIRR--AGMK--VGLVLNPETPVESIKYYIH---L--LDKITVM 137 (229)
T ss_pred EEECccCCc-------------chHHHHHHHHHH--cCCC--EEEEeCCCCCHHHHHHHHH---h--cCEEEEE
Confidence 999887431 123356677778 8875 4555555544444444433 2 5666654
No 244
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=91.86 E-value=9.4 Score=34.43 Aligned_cols=163 Identities=10% Similarity=-0.006 Sum_probs=91.1
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.+.++...+.|++.+++..-+... ..-.++++.|.+ . ++.+.+ .+++. .|.++.+-++|++++.+|
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~------~~n~~~i~~i~~-~-~~~vqv--GGGIR-~e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADD------ASLAAALEALRA-Y-PGGLQV--GGGVN-SENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCC------cccHHHHHHHHh-C-CCCEEE--eCCcc-HHHHHHHHHcCCCEEEEc
Confidence 678999999999999988876432211 112566777776 3 356654 34443 499999999999999986
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHH--hCCCCeEE--Ee--E--EEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKL--SKKGLITK--SS--I--MLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~Gi~v~--~~--~--ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
--.++ + +..+++-..++++..-. ...++.+. -+ . +-|- ..|.-+..+.+..+.+.++..+-+..
T Consensus 112 T~Av~---~----~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~Td 184 (262)
T PLN02446 112 SYVFR---D----GQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHG 184 (262)
T ss_pred hHHHh---C----CCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEE
Confidence 43222 1 13345544454444311 00222222 11 1 2222 23455667777777788888776632
Q ss_pred ccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 285 ~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.-+. ....--.++.+++++...+...+++|
T Consensus 185 I~rD--------Gtl~G~d~el~~~l~~~~~ipVIASG 214 (262)
T PLN02446 185 VDVE--------GKRLGIDEELVALLGEHSPIPVTYAG 214 (262)
T ss_pred EcCC--------CcccCCCHHHHHHHHhhCCCCEEEEC
Confidence 2221 11111124455556666666666665
No 245
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.84 E-value=7.4 Score=33.16 Aligned_cols=111 Identities=18% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+.++--+ ....+.++.+++.+|++.+-+. ..++.+.++.+.++|.+.+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~~~~iGag---~v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFPEALIGAG---TVLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCCCCEEEEE---eCCCHHHHHHHHHcCCCEEE
Confidence 45677888999999999988886322 2245588888888776655432 23579999999999999885
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.. ..+ . +.++.+++ .|+. +++|.. |.+|..+. .+.|+|.+.++
T Consensus 82 ~p--------------~~~-~---~~~~~~~~--~~~~----~i~gv~-t~~e~~~A----~~~Gad~i~~~ 124 (190)
T cd00452 82 SP--------------GLD-P---EVVKAANR--AGIP----LLPGVA-TPTEIMQA----LELGADIVKLF 124 (190)
T ss_pred cC--------------CCC-H---HHHHHHHH--cCCc----EECCcC-CHHHHHHH----HHCCCCEEEEc
Confidence 32 111 1 34444555 5554 456654 66664433 35788887775
No 246
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.73 E-value=2.4 Score=34.06 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.++.+.+.+++-+.+++-.. .+ .+.+.++++.+++..+ ++.+- ..+. ..++..+.|+++|++++.+
T Consensus 43 e~~v~aa~e~~adii~iSsl~~-~~----~~~~~~~~~~L~~~g~~~i~vi--vGG~-~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAG-GH----LTLVPALRKELDKLGRPDILVV--VGGV-IPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchh-hh----HHHHHHHHHHHHhcCCCCCEEE--EeCC-CChHhHHHHHHCCCCEEEC
Confidence 4566777788899888876442 22 4788899999988754 34443 3332 3567788899999999876
No 247
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=91.72 E-value=6.7 Score=35.83 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=67.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCC------CCCcHHHHHHHHHHHHHhCCC-cEEEEEe-C-CCC--CCHH-HHH
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDI------PDGGSGHFARTVKAMKKQKPD-IMVECLT-S-DFR--GDLR-AVE 200 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l------~~~~~~~l~~li~~ik~~~~~-~~i~~~t-~-~~~--~~~e-~l~ 200 (328)
..++.+.+..+.+.|++.+...+|+++.. ..+.+++..++++.+++..+. +.+-+.. | +.. .+.+ .++
T Consensus 73 ~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~ 152 (281)
T TIGR00677 73 IEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLK 152 (281)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHH
Confidence 35777888888999999998887876532 123356788999999876433 5544322 2 111 1222 233
Q ss_pred HHH---HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHH
Q 020304 201 TLV---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDD 263 (328)
Q Consensus 201 ~L~---~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e 263 (328)
.|+ ++|.+.+. . . .-++.+.+.+.++.+++ .|+.+ -++.|+ -.+..
T Consensus 153 ~L~~Ki~aGA~f~i-T-----Q-------~~Fd~~~~~~f~~~~~~--~gi~~--PIi~GI~pi~s~~ 203 (281)
T TIGR00677 153 YLKEKVDAGADFII-T-----Q-------LFYDVDNFLKFVNDCRA--IGIDC--PIVPGIMPINNYA 203 (281)
T ss_pred HHHHHHHcCCCEee-c-----c-------ceecHHHHHHHHHHHHH--cCCCC--CEEeeccccCCHH
Confidence 333 58887432 1 1 13455666677777777 77643 457777 34444
No 248
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.71 E-value=4.4 Score=37.33 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
.+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+++.-.|- ..+|.|. +.+-++-.+..+.+++
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~gr---vpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVGGR---VPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHCCC---CcEEEecCCCcHHHHHHHHHHHHh
Confidence 356777888899988764333221 2457788888888887743331 2278899 6668888899999999
Q ss_pred CCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCC
Q 020304 275 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 275 l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
+|+|-+-+. +|.+. +.-...-++.+++++.+.+.
T Consensus 98 ~Gad~il~v-----~PyY~---k~~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 98 LGADGILVV-----PPYYN---KPSQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred cCCCEEEEe-----CCCCc---CCChHHHHHHHHHHHHhcCC
Confidence 999976552 23321 11123445666666666554
No 249
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.62 E-value=9.2 Score=33.85 Aligned_cols=130 Identities=10% Similarity=0.151 Sum_probs=76.8
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.+.++.+.+.|++++++..-+.. .. ...-.++++.+.+... ..+.+ .+++.+.+.++.+.++|++++.++
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a-~~---~~~n~~~i~~i~~~~~-~~v~v--GGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAA-EG---VGNNEMYIKEISKIGF-DWIQV--GGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCc-CC---CcchHHHHHHHHhhCC-CCEEE--eCCcCCHHHHHHHHHCCCCEEEEC
Confidence 37888999999999999999754431 11 1222377888776321 23332 455568899999999999999887
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-----EE--EcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-----ML--GLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-----iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
-++++ +++-+.+..+..-. ..+.++.++ +. |-.++.-+..+.+..+.++|+..+-+.
T Consensus 103 t~a~~-----------~p~~~~~~~~~~g~--~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~t 166 (232)
T PRK13586 103 TIVFT-----------NFNLFHDIVREIGS--NRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFT 166 (232)
T ss_pred chhhC-----------CHHHHHHHHHHhCC--CCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEe
Confidence 65433 11222222222100 112222332 22 222344467788888899998776553
No 250
>PRK08005 epimerase; Validated
Probab=91.53 E-value=4 Score=35.57 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHCCCcEEEEE--eccC-CCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 133 PMEPENTAKAIASWGVDYIVLT--SVDR-DDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~--gg~~-~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
+..+.++++++.+.|++.+++- .|.. |.+. .=.+.++.+++.. ..+.++..... .+..++.++++|.+
T Consensus 12 ~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~t-----fG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad 83 (210)
T PRK08005 12 PLRYAEALTALHDAPLGSLHLDIEDTSFINNIT-----FGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPG 83 (210)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccc-----cCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCC
Confidence 3456788999999999987763 2321 2222 2234566666542 12455544432 45789999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+++..|+.+ ...++++.+|+ .|++ +++-+..+-..+.+...+. .+|.+-++
T Consensus 84 ~It~H~Ea~~--------------~~~~~l~~Ik~--~G~k--~GlAlnP~Tp~~~i~~~l~-----~vD~VlvM 135 (210)
T PRK08005 84 WIFIHAESVQ--------------NPSEILADIRA--IGAK--AGLALNPATPLLPYRYLAL-----QLDALMIM 135 (210)
T ss_pred EEEEcccCcc--------------CHHHHHHHHHH--cCCc--EEEEECCCCCHHHHHHHHH-----hcCEEEEE
Confidence 9999887421 12346666777 7875 4555555555555544333 35555553
No 251
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=91.42 E-value=3.2 Score=36.60 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
.+.+.++++.+++. ++.++.|... +++.++.-++.|.+.+-+.-..+-. +...-. ...++.+.++.+.+++
T Consensus 109 ~~~l~~~i~~l~~~--gI~VSLFiDP---~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~--~~el~~i~~aa~~A~~- 180 (237)
T TIGR00559 109 KDKLCELVKRFHAA--GIEVSLFIDA---DKDQISAAAEVGADRIEIHTGPYANAYNKKEM--AEELQRIVKASVHAHS- 180 (237)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH-
Confidence 57899999999987 7888887654 7899999999999999875444322 111000 1246778888888888
Q ss_pred CCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-CCEEeeeccc
Q 020304 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYL 286 (328)
Q Consensus 245 ~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-~~~i~i~~~l 286 (328)
.|+.|++ |+|-+.+.+.... +-.+ +..+++...+
T Consensus 181 -lGL~VnA----GHgLny~Nv~~i~---~~~~~i~EvnIGHsi 215 (237)
T TIGR00559 181 -LGLKVNA----GHGLNYHNVKYFA---EILPYLDELNIGHAI 215 (237)
T ss_pred -cCCEEec----CCCCCHHhHHHHH---hCCCCceEEecCHHH
Confidence 8988654 6788877765432 3333 5566665443
No 252
>PLN02321 2-isopropylmalate synthase
Probab=91.40 E-value=6.8 Score=39.95 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=76.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-Cc---EEEEEeCCCCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DI---MVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~---~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
++.++-.++++.+.+.|++.|-+.. |..+..+.+.+..+.+.++...+ +. .+..+.. ...+-++...+++
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~r---a~~~dId~A~~al 178 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGF---PIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSR---CNKKDIDAAWEAV 178 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC---cCCCccHHHHHHHHHHhcccCCCccccceeeeeehh---ccHHhHHHHHHHh
Confidence 5667778999999999999887632 22332233444433333221100 11 1111221 2445555555553
Q ss_pred --C--cEEeechhhHHHH-HhhhcCCCCCHH----HHHHHHHHHHHhCCCCe-EEEeEEEEcCCCHHHHHHHHHHHHhCC
Q 020304 207 --L--DVFAHNIETVKRL-QRIVRDPRAGYE----QSLEVLKHAKLSKKGLI-TKSSIMLGLGESDDDLKEAMADLRSID 276 (328)
Q Consensus 207 --~--~~i~~~~et~~~~-~~~~~~~~~~~~----~~l~~i~~~~~~~~Gi~-v~~~~ivGlgEt~e~~~~~l~~l~~l~ 276 (328)
. .++.+-+-+.+-. ...+ +.+.+ ...+.++.+++ .|.. +..+.-.+..-..+.+.+.++.+.+.|
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l---~~t~ee~l~~~~~~V~~Ak~--~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG 253 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKL---RKTPDEVVEIARDMVKYARS--LGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG 253 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCceEEEecccCCCCCHHHHHHHHHHHHHcC
Confidence 2 3566555444442 2222 23444 45567777888 7764 333322222234666778889999999
Q ss_pred CCEEee
Q 020304 277 VDILTL 282 (328)
Q Consensus 277 ~~~i~i 282 (328)
++.+.+
T Consensus 254 a~~I~L 259 (632)
T PLN02321 254 ATTLNI 259 (632)
T ss_pred CCEEEe
Confidence 998776
No 253
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=1.7 Score=40.98 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=62.0
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE--EEeEEEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT--KSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v--~~~~ivGlgEt~e~~~~~l~~l 272 (328)
+-+.+..+.++|.|.+++|...+....+. ...+.+++.+.++.+++ .|.++ .++.+. +.+..+.+.+.++.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~--~gkk~~V~~N~~~-~~~~~~~~~~~l~~l 88 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHS--AGKKVYVAVNTLL-HNDELETLERYLDRL 88 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHH--cCCeEEEEecccc-ccchhhHHHHHHHHH
Confidence 67888899999999999986522211111 25788999999999999 99863 333333 356667789999999
Q ss_pred HhCCCCEEeee
Q 020304 273 RSIDVDILTLG 283 (328)
Q Consensus 273 ~~l~~~~i~i~ 283 (328)
.++|+|.+-+.
T Consensus 89 ~e~GvDaviv~ 99 (347)
T COG0826 89 VELGVDAVIVA 99 (347)
T ss_pred HHcCCCEEEEc
Confidence 99999987663
No 254
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.38 E-value=11 Score=34.38 Aligned_cols=169 Identities=17% Similarity=0.115 Sum_probs=95.3
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|...+...-.+. ++.+.+...++.+.+....+.+.. ..+.-.+.+.++...++|++.+.+
T Consensus 26 ~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~l-hlDH~~~~e~i~~ai~~Gf~sVmi 103 (282)
T TIGR01859 26 LEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVAL-HLDHGSSYESCIKAIKAGFSSVMI 103 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEEE-ECCCCCCHHHHHHHHHcCCCEEEE
Confidence 344566777777777665544332221221 225778888888777642156543 334434678888889999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--C---------CCHHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G---------ESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--g---------Et~e~~~~~l~~l~~l~~~~i~ 281 (328)
....++. ....+...+.++.+++ .|+.+..- +|. | .+..+..+..++.++.|+|.+.
T Consensus 104 d~s~l~~--------~eni~~t~~v~~~a~~--~gv~Ve~E--lG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~La 171 (282)
T TIGR01859 104 DGSHLPF--------EENLALTKKVVEIAHA--KGVSVEAE--LGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLA 171 (282)
T ss_pred CCCCCCH--------HHHHHHHHHHHHHHHH--cCCEEEEe--eCCCcCccccccccccccCCHHHHHHHHHHHCcCEEe
Confidence 4322210 0122334456666677 77654422 233 2 1122555667777778999988
Q ss_pred eecc--cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 282 LGQY--LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 282 i~~~--l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+. + +.++.. ..+.+. ++.++++....++..|..|
T Consensus 172 vs-~Gt~hg~~~---~~~~l~---~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 172 AA-IGTSHGKYK---GEPGLD---FERLKEIKELTNIPLVLHG 207 (282)
T ss_pred ec-cCccccccC---CCCccC---HHHHHHHHHHhCCCEEEEC
Confidence 52 1 111111 112223 6667777777788888776
No 255
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.22 E-value=9 Score=33.25 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~-~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+.++..+.++.+.+.|++-+-++--+ +...+.++.+++.+++ +.+- .+..++.+.++...++|.+.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~---------~~~~~~i~~l~~~~~~~~~iG---aGTV~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNS---------PDPFDSIAALVKALGDRALIG---AGTVLSPEQVDRLADAGGRLI 87 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------ccHHHHHHHHHHHcCCCcEEe---EEecCCHHHHHHHHHcCCCEE
Confidence 45677889999999999977776222 1233477777777653 4443 344568999999999999876
Q ss_pred ee
Q 020304 211 AH 212 (328)
Q Consensus 211 ~~ 212 (328)
..
T Consensus 88 vs 89 (206)
T PRK09140 88 VT 89 (206)
T ss_pred EC
Confidence 54
No 256
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.13 E-value=2.2 Score=37.66 Aligned_cols=96 Identities=17% Similarity=0.298 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEE--eccC-CCCCCCcHHHHHHHHHHHHHhCCCcEE--EEEeCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLT--SVDR-DDIPDGGSGHFARTVKAMKKQKPDIMV--ECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~--gg~~-~~l~~~~~~~l~~li~~ik~~~~~~~i--~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
+..+.++++++.+.|++.+++- .|.. |.+. .=.+.++++++..|++.+ +..+.. ....++.+.++|.
T Consensus 18 ~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~-----~G~~~v~~lr~~~~~~~lDvHLm~~~---p~~~i~~~~~~Ga 89 (228)
T PTZ00170 18 FSKLADEAQDVLSGGADWLHVDVMDGHFVPNLS-----FGPPVVKSLRKHLPNTFLDCHLMVSN---PEKWVDDFAKAGA 89 (228)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCccCCCcC-----cCHHHHHHHHhcCCCCCEEEEECCCC---HHHHHHHHHHcCC
Confidence 3456788999999999988763 3321 2222 124667778776555433 433221 3567899999999
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
+.+++..|+.+ +...++++.+++ .|..+.
T Consensus 90 d~itvH~ea~~-------------~~~~~~l~~ik~--~G~~~g 118 (228)
T PTZ00170 90 SQFTFHIEATE-------------DDPKAVARKIRE--AGMKVG 118 (228)
T ss_pred CEEEEeccCCc-------------hHHHHHHHHHHH--CCCeEE
Confidence 99998765421 113456666677 776544
No 257
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.08 E-value=11 Score=35.20 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCC-CCCcHHHHHHHHHHHHHhCCCcEEE--EEeCCCC--------------C-----
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVE--CLTSDFR--------------G----- 194 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l-~~~~~~~l~~li~~ik~~~~~~~i~--~~t~~~~--------------~----- 194 (328)
.+..+.+++.|+..|.+---..|.- ..-+.++..++.+++|+. ++.+. ..-++.= +
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l 104 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQL 104 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHH
Confidence 4566777889999887643332222 223478899999999987 44443 2112210 0
Q ss_pred -------CHHHHHHHHHcC--CcEEeechhhHHHHH-hhhcCCCCCHHHHHHHH----HHHHHhCCCCeEEEeEEEEc--
Q 020304 195 -------DLRAVETLVHSG--LDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVL----KHAKLSKKGLITKSSIMLGL-- 258 (328)
Q Consensus 195 -------~~e~l~~L~~aG--~~~i~~~~et~~~~~-~~~~~~~~~~~~~l~~i----~~~~~~~~Gi~v~~~~ivGl-- 258 (328)
+.++++.|+++| .+.+.++-|+-.-|. ..-+ ..+++.....+ +.+|+..+..+ +|+.+
T Consensus 105 ~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~--~~~~~~~a~ll~ag~~AVr~~~p~~k----V~lH~~~ 178 (332)
T PF07745_consen 105 AKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK--PSNWDNLAKLLNAGIKAVREVDPNIK----VMLHLAN 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC--TT-HHHHHHHHHHHHHHHHTHSSTSE----EEEEES-
T ss_pred HHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC--ccCHHHHHHHHHHHHHHHHhcCCCCc----EEEEECC
Confidence 457789999999 667899988866543 2222 45666555544 44555445555 45555
Q ss_pred CCCHHHHHHHHHHHHhCC--CCEEeee
Q 020304 259 GESDDDLKEAMADLRSID--VDILTLG 283 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~--~~~i~i~ 283 (328)
+...+.+...++.++..| .|.+.++
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlS 205 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLS 205 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEE
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEe
Confidence 667777788888888766 5677774
No 258
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.07 E-value=4.7 Score=36.87 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHc-CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHS-GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~a-G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
..++.+.++ |++.+.++-.+.+- ...+.+++.+.++.+.+...| ...+|+|. ..+.++..+..+.+++
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHH
Confidence 445555566 66665553222211 123455555555555443233 12355666 3455666666666666
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
+|++.+-+
T Consensus 95 ~Gad~v~~ 102 (288)
T cd00954 95 LGYDAISA 102 (288)
T ss_pred cCCCEEEE
Confidence 66665444
No 259
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.01 E-value=3.8 Score=36.19 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
..+.+.++++.+++. ++.++.|... +.+.++.-++.|.+.+-+.-..+-..+... ....++.+..+.+.+++
T Consensus 111 ~~~~l~~~i~~L~~~--gIrVSLFidP---~~~qi~~A~~~GAd~VELhTG~yA~a~~~~--~~~el~~~~~aa~~a~~- 182 (239)
T PRK05265 111 QFDKLKPAIARLKDA--GIRVSLFIDP---DPEQIEAAAEVGADRIELHTGPYADAKTEA--EAAELERIAKAAKLAAS- 182 (239)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCcc--hHHHHHHHHHHHHHHHH-
Confidence 358899999999987 7888887743 789999999999999987544432211111 12246788888888899
Q ss_pred CCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 245 ~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.|+.|+ -|+|-+.+.+... ..+ -++..+++...+
T Consensus 183 -lGL~Vn----AGHgLny~Nv~~i-~~i--p~i~EvnIGHsi 216 (239)
T PRK05265 183 -LGLGVN----AGHGLNYHNVKPI-AAI--PGIEELNIGHAI 216 (239)
T ss_pred -cCCEEe----cCCCCCHHhHHHH-hhC--CCCeEEccCHHH
Confidence 998865 4688888877652 222 235566665444
No 260
>PLN02540 methylenetetrahydrofolate reductase
Probab=90.93 E-value=5.6 Score=39.91 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCC------CcHHHHHHHHHHHHHhC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK 180 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~l~~li~~ik~~~ 180 (328)
..+++.+.+..+.+.|++.|....|+++.-.+ +.+.+..+|++.|++.+
T Consensus 71 n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~ 125 (565)
T PLN02540 71 PVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKY 125 (565)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhC
Confidence 34577888888999999999887787753321 34567999999999864
No 261
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.91 E-value=10 Score=36.68 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=83.3
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+.++.+.+.|++.|.+---+ +. .+.+.++++.+++......+.++.|+ .++...+.|.+.+.++.+-+
T Consensus 221 ~~ve~aL~aGv~~VQLReK~---ls---~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL 288 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKD---PQ---QADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDL 288 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCC---CC---HHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHc
Confidence 46888889999888775222 22 35566666655543211223334453 24555677889888876433
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccC
Q 020304 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVK 296 (328)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~ 296 (328)
... ..+.+.. + +.++|+ ..+.+|+ ..+.+.|+|.+.++++. ||.......
T Consensus 289 ~~~----------------~aR~ilg--~------~~iIGvStHs~eEl----~~A~~~gaDYI~lGPIF-pT~TK~~~~ 339 (437)
T PRK12290 289 EEA----------------NLAQLTD--A------GIRLGLSTHGYYEL----LRIVQIQPSYIALGHIF-PTTTKQMPS 339 (437)
T ss_pred chh----------------hhhhhcC--C------CCEEEEecCCHHHH----HHHhhcCCCEEEECCcc-CCCCCCCCC
Confidence 210 0111111 2 357888 7888775 34456899999998765 765431122
Q ss_pred CCCCHHHHHHHHHHHHh------cCCceeeec
Q 020304 297 EYVTPEKFDFWKAYGES------IGFRYVASG 322 (328)
Q Consensus 297 ~~~~~~~~~~l~~~~~~------~G~~~~~~g 322 (328)
+....+.+..++++... .++..|++|
T Consensus 340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG 371 (437)
T PRK12290 340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG 371 (437)
T ss_pred CCCCHHHHHHHHHHhhhccccccCCCCEEEEC
Confidence 33445556555555533 378888887
No 262
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.87 E-value=4.5 Score=37.43 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.|.++|++.+.++=.+.+- ...+.+++.+.++.+.+...| ...+|+|. ..+.++..+.++.+++.
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGEC-------ATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccc-------hhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 45666666777776653222211 124566666666666553222 12356777 35666777777777777
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+-+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 7776554
No 263
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.76 E-value=3.7 Score=37.55 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.|.+.|++.+.++-.+.+ . ...+.+++.+.++.+.+...| ...+++|. +.+.++..+.++.++++
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE-~------~~ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGE-S------PTLTHEEHEELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCc-c------ccCCHHHHHHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHc
Confidence 3455555556666554221111 0 023455555555555442222 12245555 34555555666666666
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 6665444
No 264
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.73 E-value=4.1 Score=37.14 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.+.|++.+.++=.+.+ . ...+.+++.+.++.+.+...| ...+++|. ..+.++..+..+.+++.
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE-~------~~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGE-S------PTLSHEEHKKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcc-c------ccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHc
Confidence 4455556666666655222221 0 124556666666655543233 12355666 44566666666666666
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 93 Gad~v~v 99 (285)
T TIGR00674 93 GADGFLV 99 (285)
T ss_pred CCCEEEE
Confidence 7665544
No 265
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.66 E-value=2.2 Score=39.07 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+++.++.+.|++.|.+. .++ ++.+.++++.+++..+.+.+++ .+++ +.+.+..++++|+|.+.++-
T Consensus 206 leea~eA~~~GaD~I~LD-----n~~---~e~l~~av~~~~~~~~~i~leA--sGGI-t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD-----NMP---VDLMQQAVQLIRQQNPRVKIEA--SGNI-TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHHHHhcCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEEch
Confidence 567777888999888773 233 5888998988887666776654 4444 99999999999999999864
No 266
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=90.61 E-value=9.5 Score=34.79 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCchHHHHHHHHHCC-----CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh--CCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWG-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G-----~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~--~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
+.++-.+.++.+.+.| +++|-+.+ +.. ....++.+.+... .++ +.... ....+-++...+
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~~---~d~~~v~~~~~~~~~~~~--v~~~~---r~~~~die~A~~ 85 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YTE---KDREAVEACLDRGYKFPE--VTGWI---RANKEDLKLVKE 85 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecC-----cCh---HHHHHHHHHHHcCCCCCE--EEEEe---cCCHHHHHHHHH
Confidence 4556678899999999 99887632 222 3444444433321 133 32221 125677888999
Q ss_pred cCCcEEeechhhHHHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHH--------HHHHHHHHHh
Q 020304 205 SGLDVFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDD--------LKEAMADLRS 274 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~-~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~--------~~~~l~~l~~ 274 (328)
+|++.+.+.+-+.+... +.++ ......+...++++.+++ .|+.+..++ - +.+..+ +.+.++.+.+
T Consensus 86 ~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~--~g~~v~~~~-e--d~~r~d~~~~v~~~~~~~~~~~~~ 160 (279)
T cd07947 86 MGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD--HGIKPRCHL-E--DITRADIYGFVLPFVNKLMKLSKE 160 (279)
T ss_pred cCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH--CCCeEEEEE-E--cccCCCcccchHHHHHHHHHHHHH
Confidence 99999988665555432 2221 112234556677778888 898765443 1 333332 3344444555
Q ss_pred CCCC-EEee
Q 020304 275 IDVD-ILTL 282 (328)
Q Consensus 275 l~~~-~i~i 282 (328)
.|++ .+.+
T Consensus 161 ~G~~~~i~l 169 (279)
T cd07947 161 SGIPVKIRL 169 (279)
T ss_pred CCCCEEEEe
Confidence 8998 5666
No 267
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.53 E-value=2.2 Score=39.11 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-|.+- .+. ++.+.+.++.+++..+.+.+++ +++ ++.+.+..+++.|+|.+..|.
T Consensus 209 l~ea~eal~~gaDiI~LD-----nm~---~e~vk~av~~~~~~~~~v~iea--SGG-I~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLDEVLAEGAELVLLD-----NFP---VWQTQEAVQRRDARAPTVLLES--SGG-LTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHHHcCCCEEEeC-----CCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 467777788899877772 243 5888898988877766766654 444 499999999999999999864
No 268
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.52 E-value=2 Score=39.01 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+. . +. ++.+.++++.++...|++.+++ .+++ +++.+..+++.|+|.+.+|-
T Consensus 192 leea~~A~~~GaDiI~LD---n--~~---~e~l~~~v~~~~~~~~~~~ieA--sGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 192 LEEAKNAMNAGADIVMCD---N--MS---VEEIKEVVAYRNANYPHVLLEA--SGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHHHcCCCEEEEC---C--CC---HHHHHHHHHHhhccCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 577788888999877652 1 22 5889999987766556666654 4554 99999999999999999864
No 269
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.48 E-value=14 Score=33.85 Aligned_cols=136 Identities=12% Similarity=0.117 Sum_probs=85.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+.. .+.+. +.-|.-.+.+.+.+-.++|++++-+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~--g~~~~~~~~~~~a~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftSVMi 103 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFSYA--GTDYIVAIAEVAARKY-NIPLA-LHLDHHEDLDDIKKKVRAGIRSVMI 103 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHhhC--CHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeEEe
Confidence 355667777777777654433332211122 3577888888777653 56663 3445555788999999999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--EEEEc-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~ivGl-gE----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ + ..+.+...++++.++. .|+.|-+- -|-|- ++ + .-+-.+..+|+++.|+|.+.
T Consensus 104 DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LA 173 (284)
T PRK12737 104 DGSHLS-F-------EENIAIVKEVVEFCHR--YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLA 173 (284)
T ss_pred cCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEe
Confidence 543322 1 1234556688888999 88876543 23333 11 1 12457888999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 174 v 174 (284)
T PRK12737 174 V 174 (284)
T ss_pred e
Confidence 7
No 270
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.44 E-value=5.5 Score=36.75 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~ 276 (328)
+.++.+.++|++.+.++=.+.+ . ...+.+++.+.++.+.+...| ...+|+|.|.+.++..+.++.++++|
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE-~------~~Lt~eEr~~~~~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGE-F------FSLTPDEYSQVVRAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcC-c------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 5566677777877765322221 1 134667777777766553222 12356666446777777788888888
Q ss_pred CCEEee
Q 020304 277 VDILTL 282 (328)
Q Consensus 277 ~~~i~i 282 (328)
++.+.+
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 877654
No 271
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.43 E-value=11 Score=32.44 Aligned_cols=120 Identities=20% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--HHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD--LRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~--~e~l~~L~~aG~~~ 209 (328)
++++..+.++.+ +.|++-+-++ .+ +. .+.-.+.++.+++.+++..+-+-+- +++ ...++.+.++|.+.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~--~~--l~---~~~g~~~i~~l~~~~~~~~i~~d~k--~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIG--TP--LI---KNEGIEAVKEMKEAFPDRKVLADLK--TMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeC--CH--HH---HHhCHHHHHHHHHHCCCCEEEEEEe--eccchHHHHHHHHHcCCCE
Confidence 345667777777 6777755552 11 11 1233577888888766544432110 123 23689999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+.+..++. .....+.++.+++ .|+.+. +++ + .| ..+.+..+.++|++.+.++
T Consensus 80 i~vh~~~~-------------~~~~~~~i~~~~~--~g~~~~----~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 80 VTVLGVAD-------------DATIKGAVKAAKK--HGKEVQ----VDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred EEEeccCC-------------HHHHHHHHHHHHH--cCCEEE----EEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 98765431 1234567777888 888743 343 2 23 2223344466799988774
No 272
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.39 E-value=4.8 Score=36.48 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.|.+.|++.+.++-.+.+- ...+.+++.+.++.+.+...| ...+++|. +.+.++..+..+.++++
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~-------~~ls~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEA-------PTLTDEERKEVIEAVVEAVAG---RVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHHc
Confidence 45566666666666653222221 124556666666666552221 12356666 45666666666677777
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+.+
T Consensus 92 Gad~v~v 98 (281)
T cd00408 92 GADGVLV 98 (281)
T ss_pred CCCEEEE
Confidence 7766554
No 273
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.38 E-value=4.9 Score=35.44 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
..+.+.++++.+++. ++.++.|... +.+.++.-++.|.+.+-+.-..+-. +...-. ...++.+.++.+.+++
T Consensus 108 ~~~~l~~~i~~l~~~--gI~VSLFiDP---d~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~--~~el~~i~~aa~~a~~ 180 (234)
T cd00003 108 QAEKLKPIIERLKDA--GIRVSLFIDP---DPEQIEAAKEVGADRVELHTGPYANAYDKAER--EAELERIAKAAKLARE 180 (234)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH
Confidence 358899999999987 7888877654 7899999999999999875444322 111000 1246788888888999
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
.|+.|++ |+|-+.+.+..... + -++..+++...
T Consensus 181 --~GL~VnA----GHgLny~Nv~~i~~-i--p~i~ElnIGHs 213 (234)
T cd00003 181 --LGLGVNA----GHGLNYENVKPIAK-I--PGIAELNIGHA 213 (234)
T ss_pred --cCCEEec----CCCCCHHHHHHHHh-C--CCCeEEccCHH
Confidence 9988654 67888887755443 2 23455555443
No 274
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.15 E-value=5.5 Score=35.84 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEE--EEeCCCC--
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVE--CLTSDFR-- 193 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------~~~l~~li~~ik~~~~~~~i~--~~t~~~~-- 193 (328)
.+.-.+.++.+.+.|++-+-+.---.+.+.|+. .+.+.++++.+++..+++.+. .+.|...
T Consensus 23 ~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~ 102 (256)
T TIGR00262 23 LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhh
Confidence 345578888999999997766321111233331 256778888888653344432 2233211
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHH---HHHhhhcCC---------CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CC
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVK---RLQRIVRDP---------RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE 260 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~---~~~~~~~~~---------~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gE 260 (328)
..++.++.++++|++.+.+..+..+ ++.+.++.. ..+..++++.+... . .|+-...+.. |. |+
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~-~--~gfiy~vs~~-G~TG~ 178 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK-S--QGFVYLVSRA-GVTGA 178 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh-C--CCCEEEEECC-CCCCC
Confidence 1267899999999999887443332 222222100 12334444433322 2 5665433333 77 66
Q ss_pred C---HHHHHHHHHHHHhC
Q 020304 261 S---DDDLKEAMADLRSI 275 (328)
Q Consensus 261 t---~e~~~~~l~~l~~l 275 (328)
. ..++.+.++.+++.
T Consensus 179 ~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 179 RNRAASALNELVKRLKAY 196 (256)
T ss_pred cccCChhHHHHHHHHHhh
Confidence 3 45567777777764
No 275
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=90.07 E-value=7.6 Score=35.48 Aligned_cols=138 Identities=11% Similarity=0.160 Sum_probs=78.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEecc-CCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~-~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
.+++++.+.++++.+.|+.-|-+.|.- .|... ..+.+++..+++.+++.. ++.+++-| ...++++.-.++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT----~~~~va~~AL~~ 109 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDT----SKPEVIRESAKA 109 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEEC----CCHHHHHHHHHc
Confidence 456778889999999999876664321 11111 012355777788887653 45554422 267777777778
Q ss_pred CCcEEee--c---hhhHHHHHhh----h----cC-C-C----CC--------HHHHHHHHHHHHHhCCCC---eEEEeEE
Q 020304 206 GLDVFAH--N---IETVKRLQRI----V----RD-P-R----AG--------YEQSLEVLKHAKLSKKGL---ITKSSIM 255 (328)
Q Consensus 206 G~~~i~~--~---~et~~~~~~~----~----~~-~-~----~~--------~~~~l~~i~~~~~~~~Gi---~v~~~~i 255 (328)
|.+-++= + .+.++...+. + ++ + . .. .+...+.++.+.+ .|+ .+..+--
T Consensus 110 GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~--~GI~~~~IilDPG 187 (282)
T PRK11613 110 GAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA--AGIAKEKLLLDPG 187 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH--cCCChhhEEEeCC
Confidence 8776631 1 1112211110 0 00 0 0 01 1344566677888 999 5666666
Q ss_pred EEcCCCHHHHHHHHHHHHhC
Q 020304 256 LGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l 275 (328)
+|+|.|.++=.++++.+..+
T Consensus 188 iGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 188 FGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 78888887766666655443
No 276
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=90.07 E-value=8.3 Score=34.20 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC--------CHHHHHHHHHcCCcEEeechhhHHH
Q 020304 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG--------DLRAVETLVHSGLDVFAHNIETVKR 219 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~--------~~e~l~~L~~aG~~~i~~~~et~~~ 219 (328)
++.+-|.+|....++ .+.+.+.++..+++ ++.+. +.+... -++.++..++.|++.+-+|.-++
T Consensus 25 ID~lKfg~Gt~~l~~---~~~l~eki~la~~~--~V~v~--~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-- 95 (237)
T TIGR03849 25 ITFVKFGWGTSALID---RDIVKEKIEMYKDY--GIKVY--PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-- 95 (237)
T ss_pred eeeEEecCceEeecc---HHHHHHHHHHHHHc--CCeEe--CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc--
Confidence 556667666654333 25677777777765 45552 222110 25667788888998888764332
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--C-----CCHHHHHHHHHHHHhCCCCEEee
Q 020304 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-----ESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--g-----Et~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+.+++++.++.+++ .|+.+.+- +|. . .+.+++.+.++.-.+.|++.+.+
T Consensus 96 --------~i~~~~~~rlI~~~~~--~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~Vii 153 (237)
T TIGR03849 96 --------EISLEERCNLIERAKD--NGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAGADYVII 153 (237)
T ss_pred --------CCCHHHHHHHHHHHHh--CCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 2456777888888887 77765433 343 2 34455666666557777777665
No 277
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=90.07 E-value=3.7 Score=39.05 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=80.5
Q ss_pred CCCCCch-HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEE-EEEe--CCCCCC--HHHHHHHH
Q 020304 130 PPDPMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLT--SDFRGD--LRAVETLV 203 (328)
Q Consensus 130 ~~~~~ei-~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i-~~~t--~~~~~~--~e~l~~L~ 203 (328)
+.+++++ ..-++...++|++-+.+. +.+.| ...+...++.+|+....... .++| |...++ .+.+++|.
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRiF----DAlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRIF----DALND--VRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEec----hhccc--hhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH
Confidence 3467776 557778889999977664 33443 56788888888887432221 1333 333222 48899999
Q ss_pred HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe--EEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI--TKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~--v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
+.|+|++.+-. +-- -.++....+.++.+++.. +++ +.++-.-|+ -..+.....+.|+|.+-
T Consensus 167 ~~g~DSIciKD-----maG-----lltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~------a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 167 EMGVDSICIKD-----MAG-----LLTPYEAYELVKAIKKEL-PVPVELHTHATSGM------AEMTYLKAVEAGVDGID 229 (472)
T ss_pred HcCCCEEEeec-----ccc-----cCChHHHHHHHHHHHHhc-CCeeEEecccccch------HHHHHHHHHHhCcchhh
Confidence 99999999832 222 245666677777777643 354 344444454 23455566778888654
No 278
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.03 E-value=4 Score=32.11 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.++.+.+.+.+.+.+++... .+ .+.+.++++.+++..+ ++.+.+ .+. ..++..++++++|++.+.+
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~-~~----~~~~~~~~~~L~~~~~~~i~i~~--GG~-~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSG-GH----MTLFPEVIELLRELGAGDILVVG--GGI-IPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccch-hh----HHHHHHHHHHHHhcCCCCCEEEE--ECC-CCHHHHHHHHHCCCCEEEC
Confidence 4566667788888888876543 22 4788899999998754 444433 222 2567789999999998876
No 279
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=89.96 E-value=1.2 Score=40.23 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCcEEE-EEeCCCC------------CC-HHHHHHHHHcCCcEEee
Q 020304 168 HFARTVKAMKKQKPDIMVE-CLTSDFR------------GD-LRAVETLVHSGLDVFAH 212 (328)
Q Consensus 168 ~l~~li~~ik~~~~~~~i~-~~t~~~~------------~~-~e~l~~L~~aG~~~i~~ 212 (328)
.+..+-+.+++.+|+..+. ++|+..+ .+ .+.|+.|++.|+..+.+
T Consensus 19 ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~V 77 (262)
T PF06180_consen 19 TIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVV 77 (262)
T ss_dssp HHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEE
Confidence 6777778889999998775 4554311 12 58899999999888875
No 280
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=89.85 E-value=17 Score=33.87 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+.++..+.++.+.+.|++.+-+.... .. +...+..+.+......-.+..+.+. ..+.++...++|++.+.
T Consensus 18 ~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~ 87 (344)
T TIGR02146 18 STEQKIEIAKALDEFGIDYIEVTHPA---AS----KQSRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDGID 87 (344)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CC----HHHHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCEEE
Confidence 44566788889999999988876422 22 1222334444333212233333321 46778888899998876
Q ss_pred ech--hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 212 HNI--ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 212 ~~~--et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.. +......+.........++....++.+++ .|+.+...++-......+++.+..+.+.+++++.+.+
T Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~--~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~ 158 (344)
T TIGR02146 88 IFFGTSKLLRIAEHRSDAKSILESARETIEYAKS--AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGI 158 (344)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 632 22222222221011234567788889999 9998877776666666788999999999999998665
No 281
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=89.83 E-value=12 Score=32.08 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~--i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++...+.++.+.+.|++.+.+.-.+.+.... ...-.+.++.+++. ++.. +.+.+.+ ..+.++.++++|.+.+
T Consensus 10 ~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~-~~~~v~v~lm~~~---~~~~~~~~~~~gadgv 83 (210)
T TIGR01163 10 FARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKY-TDLPIDVHLMVEN---PDRYIEDFAEAGADII 83 (210)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHHHHHcCCCEE
Confidence 4456788999999999988874222221221 23445677777764 3333 4444443 4678999999999998
Q ss_pred eec
Q 020304 211 AHN 213 (328)
Q Consensus 211 ~~~ 213 (328)
.+.
T Consensus 84 ~vh 86 (210)
T TIGR01163 84 TVH 86 (210)
T ss_pred EEc
Confidence 764
No 282
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.73 E-value=15 Score=33.06 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEee
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.++.++.++.+++....+++- .+++- .- -.--+.+.++.+.+.|++.+.+
T Consensus 68 G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~-Npi~~~G~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 68 GMTPEKCFELLKKVRQKHPNIPIG-LLTYY-NLIFRKGVEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEE-EEEec-cHHhhhhHHHHHHHHHHcCCCEEEE
Confidence 567777777777776522244432 22221 10 0012234566666777776655
No 283
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.71 E-value=2.5 Score=40.14 Aligned_cols=138 Identities=19% Similarity=0.156 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----CC--CC---HHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR--GD---LRAV 199 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~~--~~---~e~l 199 (328)
+..++..-+++++.+.|+-.+-+-||-..+-. ..--++=.+-++.+|+..|+..+..+--+ +. .| +..+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 45677788999999999988877766532110 00003334567777777666443211111 10 01 4566
Q ss_pred HHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCC
Q 020304 200 ETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 200 ~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~ 277 (328)
+...+.|+|.+.+- +.++. ......+++.+++ .|..+...+-+-. -.|.+-..+.++.+.++|+
T Consensus 105 ~ka~~nGidvfRiF----DAlND--------~RNl~~ai~a~kk--~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~ 170 (472)
T COG5016 105 EKAAENGIDVFRIF----DALND--------VRNLKTAIKAAKK--HGAHVQGTISYTTSPVHTLEYYVELAKELLEMGV 170 (472)
T ss_pred HHHHhcCCcEEEec----hhccc--------hhHHHHHHHHHHh--cCceeEEEEEeccCCcccHHHHHHHHHHHHHcCC
Confidence 77778888877651 22322 2233345555666 6766655554444 6778888888888888888
Q ss_pred CEEee
Q 020304 278 DILTL 282 (328)
Q Consensus 278 ~~i~i 282 (328)
|++.+
T Consensus 171 DSIci 175 (472)
T COG5016 171 DSICI 175 (472)
T ss_pred CEEEe
Confidence 87776
No 284
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.71 E-value=7.3 Score=36.56 Aligned_cols=107 Identities=14% Similarity=0.219 Sum_probs=63.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
+++++.+.++.+.+.|+..|.+.....-.. ++.+.++++.+++.. |++.+..- .++.-+. -..+.. .++|++
T Consensus 142 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~----P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~aGa~ 216 (337)
T PRK08195 142 PPEKLAEQAKLMESYGAQCVYVVDSAGALL----PEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAA-VEAGAT 216 (337)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeCCCCCCCC----HHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHH-HHhCCC
Confidence 567788899999999999999863322212 589999999999876 46555432 2332223 334444 479999
Q ss_pred EEeec------------hhhHHH-HHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 209 VFAHN------------IETVKR-LQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 209 ~i~~~------------~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
.+-.+ +|.+-. +.+.-...+.+.+..+++.+.+..
T Consensus 217 ~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~ 264 (337)
T PRK08195 217 RIDGSLAGLGAGAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVR 264 (337)
T ss_pred EEEecChhhcccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 87542 233221 222211234566666666665544
No 285
>PRK02227 hypothetical protein; Provisional
Probab=89.70 E-value=11 Score=33.36 Aligned_cols=166 Identities=20% Similarity=0.184 Sum_probs=99.7
Q ss_pred CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE-EEeCCC-----CCCHHHHH
Q 020304 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE-CLTSDF-----RGDLRAVE 200 (328)
Q Consensus 127 ~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~-~~t~~~-----~~~~e~l~ 200 (328)
+.....+.++...+..+...|+++|.+.=...... ....+.+..+++.++...++..+. +.-.+. .-+.++.+
T Consensus 60 GD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~ 138 (238)
T PRK02227 60 GDVPYKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPA 138 (238)
T ss_pred cCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHH
Confidence 44455566777778888889999887631111111 111244445556666665565543 222221 12468899
Q ss_pred HHHHcCCcEEeech--hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCC
Q 020304 201 TLVHSGLDVFAHNI--ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 201 ~L~~aG~~~i~~~~--et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~ 277 (328)
..+++|++.+-++- .....++. ..+.++.-+.++.+|+ .|+ +.|+ |-=. .+.+..|+.+++
T Consensus 139 ~a~~aGf~g~MlDTa~Kdg~~Lfd-----~l~~~~L~~Fv~~ar~--~Gl------~~gLAGSL~---~~dip~L~~l~p 202 (238)
T PRK02227 139 IAADAGFDGAMLDTAIKDGKSLFD-----HMDEEELAEFVAEARS--HGL------MSALAGSLK---FEDIPALKRLGP 202 (238)
T ss_pred HHHHcCCCEEEEecccCCCcchHh-----hCCHHHHHHHHHHHHH--ccc------HhHhcccCc---hhhHHHHHhcCC
Confidence 99999999988732 11122444 3578899999999999 886 4566 4321 235677799999
Q ss_pred CEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHH
Q 020304 278 DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 278 ~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~ 312 (328)
|.+.|-.-+ .... .....+.++...+|++...
T Consensus 203 D~lGfRgav--C~g~-dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 203 DILGVRGAV--CGGG-DRTGRIDPELVAELREALR 234 (238)
T ss_pred CEEEechhc--cCCC-CcccccCHHHHHHHHHHhh
Confidence 999982111 1111 1345677888888877654
No 286
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.69 E-value=4.8 Score=38.68 Aligned_cols=133 Identities=18% Similarity=0.183 Sum_probs=83.4
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
-.+.++++.+.|++-|.+-..+++ ...+.++++.+|+.+|++.+.+ . ...+.+....+.++|+|.+.++..
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi~-g--~V~T~e~a~~l~~aGaD~I~vG~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLIA-G--NIVTKEAALDLISVGADCLKVGIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEEE-E--ecCCHHHHHHHHHcCCCEEEECCC
Confidence 457888999999999888655432 2678899999999988876633 2 224889999999999999887653
Q ss_pred hHHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 216 TVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 216 t~~~-~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
...- ..+.+.+-+ -.+....++-+.+++ .++++.++ |=-.+.+|+.+.+ .+|.+.+.+...+
T Consensus 225 ~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~--~~vpVIAd---GGI~~~~Di~KAL----alGA~aVmvGs~~ 288 (404)
T PRK06843 225 PGSICTTRIVAGVGVPQITAICDVYEVCKN--TNICIIAD---GGIRFSGDVVKAI----AAGADSVMIGNLF 288 (404)
T ss_pred CCcCCcceeecCCCCChHHHHHHHHHHHhh--cCCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEccee
Confidence 3211 112221111 134444444444455 56553221 2235667765554 4888888776544
No 287
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.64 E-value=2.9 Score=38.10 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.+.+- .+. ++.+.+.++.+++..+++.+++ +++ ++.+.+..+++.|+|.+..|.
T Consensus 198 leea~ea~~~GaDiI~lD-----n~~---~e~l~~~v~~l~~~~~~~~lea--sGG-I~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD-----KFT---PQQLHHLHERLKFFDHIPTLAA--AGG-INPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHhccCCCEEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 677888888999888773 233 5889999998886666776654 444 499999999999999998753
No 288
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.62 E-value=5.3 Score=34.67 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++.+..++.+.+.|++-|-+| +.. +...+.|+.+++.+|+.-+ ..+..++++.++++.++|.+.+-
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEIT------l~s---p~a~e~I~~l~~~~p~~lI---GAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEIT------LRT---PAALEAIRALAKEFPEALI---GAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEe------cCC---CCHHHHHHHHHHhCcccEE---ccccccCHHHHHHHHHcCCCEEE
Confidence 46777889999999999977776 221 4567889999998885444 34666899999999999988663
Q ss_pred ---echhhHHHH--Hhh-hcCCCCCHHHHHHHHH
Q 020304 212 ---HNIETVKRL--QRI-VRDPRAGYEQSLEVLK 239 (328)
Q Consensus 212 ---~~~et~~~~--~~~-~~~~~~~~~~~l~~i~ 239 (328)
++.|+.+.- +.. +-+.-.|.-+...+++
T Consensus 91 sP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale 124 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYIPGVATPTEIMAALE 124 (211)
T ss_pred CCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHH
Confidence 355555431 111 1122346666666554
No 289
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=89.43 E-value=18 Score=33.74 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=92.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccC---CCCCCCc-HHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDR---DDIPDGG-SGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~---~~l~~~~-~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~~aG~ 207 (328)
++++.+.++.+.+.|++.+-|--.-+ +...... .+.+.++++.+++.. ++.+.+ +++......+.++.+.++|+
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCC
Confidence 46677888888888888776632211 1111111 256788999998753 333332 34432223688999999999
Q ss_pred cEEeechhh---------HHHH-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhC
Q 020304 208 DVFAHNIET---------VKRL-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (328)
Q Consensus 208 ~~i~~~~et---------~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l 275 (328)
+.+.+.--+ .... ...+.+ ..-....++.+..+++. .+++ |+|. -.|.+|..+.+ . .
T Consensus 190 dgi~~~nt~~~~~id~~~~~~~~~~glSG-~~~~~~al~~v~~v~~~-~~ip-----Iig~GGI~s~~Da~e~l---~-a 258 (325)
T cd04739 190 DGLVLFNRFYQPDIDLETLEVVPNLLLSS-PAEIRLPLRWIAILSGR-VKAS-----LAASGGVHDAEDVVKYL---L-A 258 (325)
T ss_pred CeEEEEcCcCCCCccccccceecCCCcCC-ccchhHHHHHHHHHHcc-cCCC-----EEEECCCCCHHHHHHHH---H-c
Confidence 998762221 1000 000110 11223345556665541 2333 5556 25666665554 3 7
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
|++.+.+.. .+.. .-+.+-..-.++|.+++.+.||+-+
T Consensus 259 GA~~Vqv~t-----a~~~-~gp~~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 259 GADVVMTTS-----ALLR-HGPDYIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred CCCeeEEeh-----hhhh-cCchHHHHHHHHHHHHHHHcCCCCH
Confidence 999998852 2211 1122334456778888888888654
No 290
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=89.37 E-value=15 Score=32.57 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=93.7
Q ss_pred chHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++.+.+......|+..|.+-= .+.--.. .+++..+-+.++. .+.+++. .++|+++...+...+.+.+-
T Consensus 25 d~v~aA~~a~~aGAdgITvHlReDrRHI~---d~Dv~~L~~~~~~---~lNlE~a-----~~~em~~ia~~~kP~~vtLV 93 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLREDRRHIR---DRDVRLLRETLKT---ELNLEMA-----ATEEMLDIALEVKPHQVTLV 93 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCC---HHHHHHHHHhcCC---CEEeccC-----CCHHHHHHHHHCCCCEEEEC
Confidence 456777777888999887731 1111122 2444444443332 3555542 27899999999999999986
Q ss_pred hhhHHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC
Q 020304 214 IETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH 292 (328)
Q Consensus 214 ~et~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~ 292 (328)
+|.-.++. ..--+-....+...++++.+++ .|+.|+..+ +.. .+.++..+++|++.|-++ |..+
T Consensus 94 PE~r~E~TTegGldv~~~~~~l~~~i~~L~~--~gIrVSLFi-----dP~---~~qi~~A~~~GAd~VELh-----TG~y 158 (239)
T PRK05265 94 PEKREELTTEGGLDVAGQFDKLKPAIARLKD--AGIRVSLFI-----DPD---PEQIEAAAEVGADRIELH-----TGPY 158 (239)
T ss_pred CCCCCCccCCccchhhcCHHHHHHHHHHHHH--CCCEEEEEe-----CCC---HHHHHHHHHhCcCEEEEe-----chhh
Confidence 66544322 1000012356788889999999 999876433 222 245678899999998884 2211
Q ss_pred cccCCCCCHHHHHHH---HHHHHhcCCceee
Q 020304 293 LTVKEYVTPEKFDFW---KAYGESIGFRYVA 320 (328)
Q Consensus 293 ~~~~~~~~~~~~~~l---~~~~~~~G~~~~~ 320 (328)
-.........+++.+ .+.+.++|+..-+
T Consensus 159 A~a~~~~~~~el~~~~~aa~~a~~lGL~VnA 189 (239)
T PRK05265 159 ADAKTEAEAAELERIAKAAKLAASLGLGVNA 189 (239)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHcCCEEec
Confidence 111111224445544 4456678876543
No 291
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.37 E-value=14 Score=32.40 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=81.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHH--HHHHHHHHhCCCc--EEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFA--RTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~--~li~~ik~~~~~~--~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.+.++++.+.|++.+.+---+....+ .... ++++.+++. ++. .++...++ ..+.++.+.++|.+.
T Consensus 20 ~~l~~~l~~~~~~g~~~ihld~~d~~f~~----~~~~g~~~~~~l~~~-~~~~~~vhlmv~~---p~d~~~~~~~~gad~ 91 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHVDVMDGHFVP----NLTIGPPVVKALRKH-TDAPLDCHLMVTN---PEDYVPDFAKAGASI 91 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCCcCC----ccccCHHHHHHHHhc-CCCcEEEEeccCC---HHHHHHHHHHcCCCE
Confidence 35678888999999998888322211011 1111 567777765 332 34443332 256788999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-CCEEeeecccCC
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQYLQP 288 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-~~~i~i~~~l~P 288 (328)
+.+..+. ...+...+.++.+++ .|+.+... +. ..|..+.. ..+.+.+ +|.+.+++. .|
T Consensus 92 v~vH~~q------------~~~d~~~~~~~~i~~--~g~~iGls--~~-~~t~~~~~---~~~~~~~~~Dyi~~~~v-~p 150 (229)
T PLN02334 92 FTFHIEQ------------ASTIHLHRLIQQIKS--AGMKAGVV--LN-PGTPVEAV---EPVVEKGLVDMVLVMSV-EP 150 (229)
T ss_pred EEEeecc------------ccchhHHHHHHHHHH--CCCeEEEE--EC-CCCCHHHH---HHHHhccCCCEEEEEEE-ec
Confidence 9776541 001234566777777 77643222 11 23444432 3333443 888776533 35
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHh-cCCceeeec
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGES-IGFRYVASG 322 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~-~G~~~~~~g 322 (328)
|... ....+..++.++++... .+...++.|
T Consensus 151 g~~~----~~~~~~~~~~i~~~~~~~~~~~I~a~G 181 (229)
T PLN02334 151 GFGG----QSFIPSMMDKVRALRKKYPELDIEVDG 181 (229)
T ss_pred CCCc----cccCHHHHHHHHHHHHhCCCCcEEEeC
Confidence 4332 11334445555544332 234444443
No 292
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=89.27 E-value=2 Score=39.00 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=78.2
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEec-cCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC-CCC-HHHHHHHHHc
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RGD-LRAVETLVHS 205 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~-~~~-~e~l~~L~~a 205 (328)
...+++|+.+.+.+..+.|+.-+++-.= +.+..+..+.+.+.++++.|++..|++-+...|... ..+ ++.++.+...
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 4457788888888888999997766432 222122335799999999999998898886544331 224 4555555553
Q ss_pred CCcEEeec----------------hhhHHHHHhhhcCCC-------CCHHHHHHHHHHHHHhCCCC---eEEEeEEEEc-
Q 020304 206 GLDVFAHN----------------IETVKRLQRIVRDPR-------AGYEQSLEVLKHAKLSKKGL---ITKSSIMLGL- 258 (328)
Q Consensus 206 G~~~i~~~----------------~et~~~~~~~~~~~~-------~~~~~~l~~i~~~~~~~~Gi---~v~~~~ivGl- 258 (328)
..+..+++ .+...++.+.++..+ ++..+ ++.++.+.+ .|+ .+...+++|.
T Consensus 101 ~pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~-l~~~~~l~~--~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 101 KPDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGH-LRNARRLIE--KGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp --SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHH-HHHHHHHHH--TTSS-SSEEEEEEES-T
T ss_pred CCCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHH-HHHHHHHHH--CCCCCCCeEEEEcccCC
Confidence 45555442 222233222221011 23344 444444555 566 3667777777
Q ss_pred C---CCHHHHHHHHHHHHh
Q 020304 259 G---ESDDDLKEAMADLRS 274 (328)
Q Consensus 259 g---Et~e~~~~~l~~l~~ 274 (328)
+ -|.+++...++.+.+
T Consensus 178 ~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 178 GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp TS--S-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCC
Confidence 4 466666666666655
No 293
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=89.20 E-value=1.9 Score=38.11 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHH-hhhcCCCCC-HHHHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPRAG-YEQSLEVLKHAK 242 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~-~~~~~~~~~-~~~~l~~i~~~~ 242 (328)
..+.+.++++.+++. ++.++.+... +.+.++.-++.|.+.+-+.-..+-..+ ..-. .... ++.+.++.+.++
T Consensus 109 ~~~~l~~~i~~L~~~--gIrvSLFiDP---~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~-~~~ell~~l~~aa~~a~ 182 (239)
T PF03740_consen 109 NRDRLKPVIKRLKDA--GIRVSLFIDP---DPEQIEAAKELGADRVELHTGPYANAFDDAEE-AEEELLERLRDAARYAH 182 (239)
T ss_dssp GHHHHHHHHHHHHHT--T-EEEEEE-S----HHHHHHHHHTT-SEEEEETHHHHHHSSHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCEEEEEeCC---CHHHHHHHHHcCCCEEEEehhHhhhhcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 368999999999997 7888887754 689999999999999987554443322 1000 0011 577888889999
Q ss_pred HhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 243 ~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+ .|+.|++ |+|-+.+.+... ++--++..+++...+
T Consensus 183 ~--lGL~VnA----GHgL~y~N~~~i---~~i~~i~EvnIGHai 217 (239)
T PF03740_consen 183 E--LGLGVNA----GHGLNYDNVRPI---AAIPPIEEVNIGHAI 217 (239)
T ss_dssp H--TT-EEEE----ETT--TTTHHHH---HTSTTEEEEEE-HHH
T ss_pred H--cCCEEec----CCCCCHHHHHHH---HhCCCceEEecCHHH
Confidence 9 9998654 676665554332 333345566665443
No 294
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=89.16 E-value=3.9 Score=34.64 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=65.1
Q ss_pred HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCC--------------HH
Q 020304 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GES--------------DD 263 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt--------------~e 263 (328)
++.++++|++.+-+.......... . .++..+..+.+++ .|+.+.+...... ... .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-----~--~~~~~~~~~~~~~--~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-----K--DDEAEELRRLLED--YGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-----H--HHHHHHHHHHHHH--TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCccccc-----c--hHHHHHHHHHHHH--cCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 467889999998886543322211 0 3445555566677 8998555444333 221 67
Q ss_pred HHHHHHHHHHhCCCCEEeeeccc--CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 264 DLKEAMADLRSIDVDILTLGQYL--QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 264 ~~~~~l~~l~~l~~~~i~i~~~l--~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
.+.+.++.++.+|+..+.+.... .+.............+.+.++.+++.+.|++...
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 88888999999999988774220 0111100000011123466777778888876543
No 295
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=89.12 E-value=7.1 Score=38.72 Aligned_cols=131 Identities=19% Similarity=0.250 Sum_probs=84.7
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
..+.++.+.+.|++-+.+...+.. .....+.++.|++.+|++.+.+ +...+.+.++.+.++|+|.+.+++.
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a---G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA---GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE---CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 368888999999999988654321 2455789999999888877654 3445899999999999999976442
Q ss_pred hHH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEE--EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 216 TVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 216 t~~-~~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
... ...+.+.+.+ -....+.++.+.+++ .|+. +|. |+ .|..|+.+.+ .+|++.+.+...+
T Consensus 313 ~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~----vIadGGi-~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQASAVYHVARYARE--RGVP----CIADGGI-KNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred CCcccccchhccCCCChHHHHHHHHHHHhh--cCCe----EEecCCC-CCHHHHHHHH----HcCCCEEEECchh
Confidence 210 0111111011 234555666667777 7765 444 32 4566655543 4888888876554
No 296
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.98 E-value=7 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHhCCCCe
Q 020304 230 GYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~ 249 (328)
+.++.++..+.+.+ .|..
T Consensus 84 ~t~~ai~~a~~a~~--~Gad 101 (293)
T PRK04147 84 NTAEAQELAKYATE--LGYD 101 (293)
T ss_pred CHHHHHHHHHHHHH--cCCC
Confidence 44555555555555 4543
No 297
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=88.95 E-value=3.3 Score=37.82 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-|.+ +.++ ++.+.+.++.+++..+.+.+++ +++ ++.+.+..+++.|+|.+..+.
T Consensus 199 leqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~~lea--SGG-I~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHCTLSL--AGG-INLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCeEEEE--ECC-CCHHHHHHHHhcCCCEEEECc
Confidence 67888888999988877 2243 5888888888876556666654 444 499999999999999998753
No 298
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.94 E-value=8.2 Score=35.42 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=11.5
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEE
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i 280 (328)
|+|. ..+.++..+..+.++++|++.+
T Consensus 73 i~gv~~~~t~~ai~~a~~A~~~Gad~v 99 (294)
T TIGR02313 73 APGTGALNHDETLELTKFAEEAGADAA 99 (294)
T ss_pred EEECCcchHHHHHHHHHHHHHcCCCEE
Confidence 4444 2344444444444444444443
No 299
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=88.93 E-value=18 Score=33.02 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+.. .+.+. +.-|.-.+.|.+.+-.++|++++-+
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~--~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSVM~ 101 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHA--GTEYIVALCSAASTTY-NMPLA-LHLDHHESLDDIRQKVHAGVRSAMI 101 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhC--CHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEEee
Confidence 355567777777777654433322211122 3577888888887764 56664 3445555789999999999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gE----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ + ..+.+...++++.++. .|+.|-+-+ +=|- ++ . ..+-.+..+|+++.|+|.+.
T Consensus 102 DgS~lp-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 171 (282)
T TIGR01858 102 DGSHFP-F-------AQNVKLVKEVVDFCHR--QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLA 171 (282)
T ss_pred cCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEe
Confidence 543221 1 1234556678888888 888765442 3222 11 1 12346788999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 172 v 172 (282)
T TIGR01858 172 V 172 (282)
T ss_pred c
Confidence 6
No 300
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.91 E-value=13 Score=32.97 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhCCCCEEe
Q 020304 262 DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 262 ~e~~~~~l~~l~~l~~~~i~ 281 (328)
.|+..+.++.+++.|.+.+.
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 34555555555555555443
No 301
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.82 E-value=8.2 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+++.+.++.+.+...| ...+|+|.+.+.++..+..+.++++|++.+.+
T Consensus 51 s~eEr~~l~~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 51 TPDEYAQVVRAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CHHHHHHHHHHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 445555555544442222 11234444324455555555555666555433
No 302
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.74 E-value=19 Score=32.96 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=85.4
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+ .+.+.+..+++.+.+.. .+.+. +.-|.-.+.+.+....++|++++-+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPV~-lHLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSY--AGTEYLLAIVSAAAKQY-HHPLA-LHLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEEEe
Confidence 34556677777777765443333221122 23577888888877763 56663 4455555889999999999999987
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gE----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ + ..+.+...++++.++. .|+.|-+-+ |=|- ++ . .-+..+..+|+++.|+|.+.
T Consensus 104 DgS~l~-~-------eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 173 (284)
T PRK09195 104 DGSHLP-F-------AQNISLVKEVVDFCHR--FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLA 173 (284)
T ss_pred CCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEe
Confidence 543322 1 1134455678888888 887655432 3222 11 0 12456788999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 174 v 174 (284)
T PRK09195 174 V 174 (284)
T ss_pred e
Confidence 6
No 303
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.67 E-value=8.1 Score=35.38 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=12.6
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEE
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i 280 (328)
+|+|. ..+.++..+..+.++++|++.+
T Consensus 73 vi~gv~~~~t~~~i~la~~a~~~Gad~v 100 (290)
T TIGR00683 73 LIAQVGSVNLKEAVELGKYATELGYDCL 100 (290)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 34444 2344444444555555555443
No 304
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=88.66 E-value=3 Score=36.69 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+++.+.++.+.+.|++.|.+. + ..+++.+++.+|++.+.+.+....-+.+.++.+++.|++++.++
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--~------------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--N------------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--C------------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 456788889999999998874 1 13577778888888887655544457999999999999999987
Q ss_pred hhh
Q 020304 214 IET 216 (328)
Q Consensus 214 ~et 216 (328)
.|.
T Consensus 68 ~EL 70 (233)
T PF01136_consen 68 PEL 70 (233)
T ss_pred ccC
Confidence 765
No 305
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=88.58 E-value=27 Score=34.50 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=87.5
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh-----CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-----KPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~-----~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+.+.++.+.+.++..+.++..+..... .=...++++..... .....+...........+.++.|.++|++.+
T Consensus 165 L~eAl~lM~~~~i~~LPVVD~~g~LvG---IIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i 241 (475)
T TIGR01303 165 PRKAFDLLEHAPRDVAPLVDADGTLAG---ILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVL 241 (475)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEE---EEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEE
Confidence 456666778888888766532211111 11122333322110 0012232222111124799999999999998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC--
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP-- 288 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-- 288 (328)
.++.- .++ .+..++.++.+|+.++++. +|.|.+-|.+...+ |.+.|++.+.+. +-|
T Consensus 242 ~~D~a-----------~g~-~~~~~~~i~~i~~~~~~~~----vi~g~~~t~~~~~~----l~~~G~d~i~vg--~g~Gs 299 (475)
T TIGR01303 242 VIDTA-----------HGH-QVKMISAIKAVRALDLGVP----IVAGNVVSAEGVRD----LLEAGANIIKVG--VGPGA 299 (475)
T ss_pred EEeCC-----------CCC-cHHHHHHHHHHHHHCCCCe----EEEeccCCHHHHHH----HHHhCCCEEEEC--CcCCc
Confidence 87431 123 3778889999998665665 57788888887654 446899988763 223
Q ss_pred ---CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 289 ---TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 289 ---Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
|... ......+.+...+..+.+.+.|+..++.|
T Consensus 300 ~~ttr~~-~~~g~~~~~a~~~~~~~~~~~~~~viadG 335 (475)
T TIGR01303 300 MCTTRMM-TGVGRPQFSAVLECAAEARKLGGHVWADG 335 (475)
T ss_pred cccCccc-cCCCCchHHHHHHHHHHHHHcCCcEEEeC
Confidence 2211 01111122223344444555677776665
No 306
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.56 E-value=22 Score=33.48 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=103.3
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+..+++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+..+.+.+. +.-+.-.+.+.+..-.++|++++-+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~--g~~~~~~~~~~~a~~~~~VPVa-lHLDHg~~~e~i~~ai~~GftSVMi 104 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYA--GEPFLRHLILAAVEEYPHIPVV-MHQDHGNSPATCQRAIQLGFTSVMM 104 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhC--CHHHHHHHHHHHHHhCCCCcEE-EECCCCCCHHHHHHHHHcCCCEEEe
Confidence 455667777777777664433322211222 3577888888887765446664 3445555788899999999999988
Q ss_pred chhhHHHHHhhhc--CCCCCHHHHHHHHHHHHHhCCCCeEEEeE-EEE-cC-------C-----C-------HHHHHHHH
Q 020304 213 NIETVKRLQRIVR--DPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLG-LG-------E-----S-------DDDLKEAM 269 (328)
Q Consensus 213 ~~et~~~~~~~~~--~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-ivG-lg-------E-----t-------~e~~~~~l 269 (328)
+-..+.+ ... +-..+.+...++++.++. .|+.|-+-+ -+| .. + . ..+-.+..
T Consensus 105 DgS~l~~---~~~~~p~eENI~~Tkevve~Ah~--~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~ 179 (347)
T PRK09196 105 DGSLKAD---GKTPASYEYNVDVTRKVVEMAHA--CGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAA 179 (347)
T ss_pred cCCCCcc---cCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHH
Confidence 5443321 000 001134456677888888 898766443 222 11 0 0 12467888
Q ss_pred HHHHhCCCCEEeeecccCCCCCCccc---CCCCCHHHHHHHHHHHHhc-CCceeee
Q 020304 270 ADLRSIDVDILTLGQYLQPTPLHLTV---KEYVTPEKFDFWKAYGESI-GFRYVAS 321 (328)
Q Consensus 270 ~~l~~l~~~~i~i~~~l~PTp~~~~~---~~~~~~~~~~~l~~~~~~~-G~~~~~~ 321 (328)
+|+++.|+|.+.+. + .|--.... .+..+.-.++.++++.... ++..|-=
T Consensus 180 ~Fv~~TgvD~LAva-i--GT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLH 232 (347)
T PRK09196 180 DFVKKTQVDALAIA-I--GTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMH 232 (347)
T ss_pred HHHHHhCcCeEhhh-h--ccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEe
Confidence 99999999987662 2 22211100 1111123577888888887 5666544
No 307
>PRK08185 hypothetical protein; Provisional
Probab=88.30 E-value=20 Score=32.75 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+ +..+++.+.+.. .+.+. +.-|.-.+.+.++...++|++.+-+
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~-~~~~~~~~a~~~-~vPV~-lHLDHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDN-FFAYVRERAKRS-PVPFV-IHLDHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHH-HHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEEEE
Confidence 445566777777777665543332221222 123 777777776653 56664 3455555889999999999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-EEEcCC-------C---HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGLGE-------S---DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-ivGlgE-------t---~e~~~~~l~~l~~l~~~~i~ 281 (328)
.-..++. ..+.+...+.++.++. .|+.+..-+ .+|..+ + ..+..+..+++++.|+|.+.
T Consensus 98 D~S~l~~--------eeNi~~t~~vv~~a~~--~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LA 167 (283)
T PRK08185 98 DGSLLPY--------EENVALTKEVVELAHK--VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLA 167 (283)
T ss_pred eCCCCCH--------HHHHHHHHHHHHHHHH--cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEE
Confidence 4322210 0123344566667777 787654433 233211 1 11566778888899999877
Q ss_pred eecccCCCC--CCcc-cCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 282 LGQYLQPTP--LHLT-VKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 282 i~~~l~PTp--~~~~-~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+. + -|- .+.. ..+.+. ++.++++....++..|.-|
T Consensus 168 va-i--Gt~HG~y~~~~kp~L~---~e~l~~I~~~~~iPLVlHG 205 (283)
T PRK08185 168 VA-I--GTAHGIYPKDKKPELQ---MDLLKEINERVDIPLVLHG 205 (283)
T ss_pred ec-c--CcccCCcCCCCCCCcC---HHHHHHHHHhhCCCEEEEC
Confidence 72 2 111 1100 012333 5666666666677776655
No 308
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=88.29 E-value=18 Score=32.74 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=67.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEe-CC-C--CCC-HHH---H
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLT-SD-F--RGD-LRA---V 199 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t-~~-~--~~~-~e~---l 199 (328)
+..++.+.+..+...|++.++..+|+++... .+.+++..++++.+++.++++.+-+.. |. . ..+ ++. +
T Consensus 71 n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L 150 (272)
T TIGR00676 71 TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENL 150 (272)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHH
Confidence 4556788888889999999987777765221 233467888999998876666654322 21 1 112 223 4
Q ss_pred HHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 200 ETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 200 ~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
+.=.++|.+.+. . . .-++.+.+.+.++.+++ .|+.+ -++.|+
T Consensus 151 ~~K~~aGA~f~i-T--------Q----~~fd~~~~~~~~~~~~~--~gi~~--PIi~Gi 192 (272)
T TIGR00676 151 KRKVDAGADYAI-T--------Q----LFFDNDDYYRFVDRCRA--AGIDV--PIIPGI 192 (272)
T ss_pred HHHHHcCCCeEe-e--------c----cccCHHHHHHHHHHHHH--cCCCC--CEeccc
Confidence 444467887432 1 1 13456666667777777 77643 467777
No 309
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=88.27 E-value=1.2 Score=40.31 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCc-EEEEEeCCCCC-----CHHHHHHHHHcC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-MVECLTSDFRG-----DLRAVETLVHSG 206 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~-~i~~~t~~~~~-----~~e~l~~L~~aG 206 (328)
...+.+.++.+.+.|+++|++++-.- ++. ..+.++.+.+++....+ .+.+..|.... +.+.++.+.++=
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhi--ipG---~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL 131 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHI--IPG---EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEAL 131 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--S--CSS---HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecce--eCc---HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHH
Confidence 45567888899999999999997653 443 44556666665543232 44443343221 244444444431
Q ss_pred CcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 207 LDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 207 ~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
...+.- . .-+. +-=..++..+........++..-+. .|. .++.+|.-|..-++.+.+..+++-|+..+.+.+|
T Consensus 132 ~~~~~~-~-~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~-~~~---~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~Pl 205 (262)
T PF06180_consen 132 AEEFPK-K-RKDEAVVLMGHGTPHPANAAYSALQAMLKK-HGY---PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPL 205 (262)
T ss_dssp HCCS-T-T--TTEEEEEEE---SCHHHHHHHHHHHHHHC-CT----TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEE
T ss_pred HHhccc-c-CCCCEEEEEeCCCCCCccHHHHHHHHHHHh-CCC---CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEec
Confidence 011100 0 0000 0000011223333444445444331 332 2356666343445788889999999999888777
Q ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 286 LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 286 l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.=...| ....+.-++-+.|+....+.||+..
T Consensus 206 MlVAGdH--a~nDmaGde~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 206 MLVAGDH--AKNDMAGDEEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp SSS--HH--HHCCCCSSSTTSHHHHHHHTT-EEE
T ss_pred ccccchh--hhhhhcCCCcchHHHHHHHCCCEEE
Confidence 6211111 1223322223578888888898754
No 310
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.25 E-value=20 Score=32.76 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=77.2
Q ss_pred CCcEEEEEecc---CCCCCCCc---HHHHHHHHHHHHHhCCCcEEEEEeCCCCCC----HHHHHHHHHcCCcEEeechhh
Q 020304 147 GVDYIVLTSVD---RDDIPDGG---SGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 147 G~~~i~l~gg~---~~~l~~~~---~~~l~~li~~ik~~~~~~~i~~~t~~~~~~----~e~l~~L~~aG~~~i~~~~et 216 (328)
|++-+.++|.. .--++|.+ ++.+.+.++.|.... .+.+.+-...+ .+ ...++.+.++|+..+++-.++
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~-~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~ 115 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT-TKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKL 115 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc-CCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccC
Confidence 89888887621 01123322 455666666666542 44543322222 34 355899999999999986655
Q ss_pred HHHHHhhhcC----CCCCHHHHHHHHHHHHHhCCC--CeEEEe--EEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 217 VKRLQRIVRD----PRAGYEQSLEVLKHAKLSKKG--LITKSS--IMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 217 ~~~~~~~~~~----~~~~~~~~l~~i~~~~~~~~G--i~v~~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+..-...+ .-.+.++..+.|+.+++...+ +.+.+. ..+ .++..++..+-.+...+.|+|.+.+
T Consensus 116 ~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~-~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 116 GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLI-LGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEeccccc-ccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4332111110 124778888888888773212 332221 111 1445777777888889999998887
No 311
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.08 E-value=23 Score=33.12 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=91.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCC---CCCCc-HHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDD---IPDGG-SGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~---l~~~~-~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~ 207 (328)
+++..+.++.+.+.|+..+.+--+-++. ..... .+.+.++++.+++.. ++.+.+- +++.....+.++.+.++|+
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~ 191 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGA 191 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCC
Confidence 4566788888888898877663221111 11111 245788999998763 4555432 3332112688899999999
Q ss_pred cEEeechhhH----H--HHH---h-hhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhC
Q 020304 208 DVFAHNIETV----K--RLQ---R-IVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (328)
Q Consensus 208 ~~i~~~~et~----~--~~~---~-~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l 275 (328)
+.+.+.--+. + ... . .+. ........++.+..+++. .++. |+|. -.|.+|..+.+ . .
T Consensus 192 dgI~~~n~~~~~~~d~~~~~~~~~~gls-g~~~~~~al~~v~~~~~~-~~ip-----Iig~GGI~s~~Da~e~l---~-a 260 (334)
T PRK07565 192 DGLVLFNRFYQPDIDLETLEVVPGLVLS-TPAELRLPLRWIAILSGR-VGAD-----LAATTGVHDAEDVIKML---L-A 260 (334)
T ss_pred CeEEEECCcCCCCcChhhcccccCCCCC-CchhhhHHHHHHHHHHhh-cCCC-----EEEECCCCCHHHHHHHH---H-c
Confidence 9987621110 0 000 0 011 111223445666666551 2333 5566 35777766555 3 8
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
|++.+.+..- +.. .-+.+-..-.++|+++..+.|++-+
T Consensus 261 GA~~V~v~t~-----~~~-~g~~~~~~i~~~L~~~l~~~g~~~i 298 (334)
T PRK07565 261 GADVVMIASA-----LLR-HGPDYIGTILRGLEDWMERHGYESL 298 (334)
T ss_pred CCCceeeehH-----Hhh-hCcHHHHHHHHHHHHHHHHcCCCCH
Confidence 9998888522 110 0012223345667777777777543
No 312
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.07 E-value=4.7 Score=36.73 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=50.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+- .+. ++.+.++++.+++.+ +.+.+++ ++++ +.+.+..+++.|+|.+..+.
T Consensus 192 leea~~a~~agaDiI~LD-----n~~---~e~l~~~v~~l~~~~~~~~~~lea--SGGI-~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 192 LEDALKAAKAGADIIMLD-----NMT---PEEIREVIEALKREGLRERVKIEV--SGGI-TPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHHhcCcCCCEEEEE--ECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 577778888999877662 233 588999999888764 4555543 4554 99999999999999998864
No 313
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=87.99 E-value=17 Score=31.64 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe--CCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t--~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++++.+. ...+--|++ .+. .+=.+.++.||+.+|+-.+.+-. .+ ...-..+...++|-|.+.+.-
T Consensus 19 i~~a~~v~~~---~diiEvGTp-Lik----~eG~~aV~~lr~~~pd~~IvAD~Kt~D--~G~~e~~ma~~aGAd~~tV~g 88 (217)
T COG0269 19 IEIAEEVADY---VDIIEVGTP-LIK----AEGMRAVRALRELFPDKIIVADLKTAD--AGAIEARMAFEAGADWVTVLG 88 (217)
T ss_pred HHHHHHhhhc---ceEEEeCcH-HHH----HhhHHHHHHHHHHCCCCeEEeeeeecc--hhHHHHHHHHHcCCCEEEEEe
Confidence 3444444433 334444554 232 34458899999999987665421 12 124567888999999988731
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
-.+.+-+..+++.+++ .|..+..++|- - .++.+-.++++++|++.+.++
T Consensus 89 -------------~A~~~TI~~~i~~A~~--~~~~v~iDl~~--~---~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 89 -------------AADDATIKKAIKVAKE--YGKEVQIDLIG--V---WDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred -------------cCCHHHHHHHHHHHHH--cCCeEEEEeec--C---CCHHHHHHHHHHhCCCEEEEE
Confidence 2456677788888889 88887777553 2 345556677777999987774
No 314
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.98 E-value=7.9 Score=34.84 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++.+.+.|++.|.|..... ...++.+.++++.+++..+. +.+++..+.++.....+..+ ++|++.
T Consensus 139 ~~~~~~~~~~~~~~~G~d~i~l~DT~G----~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi-~aGa~~ 213 (263)
T cd07943 139 SPEELAEQAKLMESYGADCVYVTDSAG----AMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAV-EAGATR 213 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC----CcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHH-HhCCCE
Confidence 457788899999999999998853222 12268999999999988654 34444222222123444444 689998
Q ss_pred Eee
Q 020304 210 FAH 212 (328)
Q Consensus 210 i~~ 212 (328)
+-.
T Consensus 214 vd~ 216 (263)
T cd07943 214 IDG 216 (263)
T ss_pred EEe
Confidence 764
No 315
>PRK12999 pyruvate carboxylase; Reviewed
Probab=87.91 E-value=37 Score=37.43 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHC--CCcEEEEEeccCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCCC----------CCCHHH
Q 020304 132 DPMEPENTAKAIASW--GVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDF----------RGDLRA 198 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~--G~~~i~l~gg~~~~l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~~----------~~~~e~ 198 (328)
+.++...+++.+.+. |+..+-+.||...+.. ..-.+.=.+.++.+++..|+..+..+..+. ...++.
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 345667888888888 9998877765422110 000022245577777776776665443321 012456
Q ss_pred HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE------c--CCCHHHHHHHHH
Q 020304 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG------L--GESDDDLKEAMA 270 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG------l--gEt~e~~~~~l~ 270 (328)
++..+++|++.+.+.. . -...+....+++.+++ .|......+-+- . ..+.+-+.+.++
T Consensus 633 i~~a~~~Gid~~rifd-~-----------lnd~~~~~~~i~~vk~--~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 633 VREAAAAGIDVFRIFD-S-----------LNWVENMRVAIDAVRE--TGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred HHHHHHcCCCEEEEec-c-----------CChHHHHHHHHHHHHH--cCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 8889999999988752 1 1124556677888888 776432222211 1 147788889999
Q ss_pred HHHhCCCCEEee
Q 020304 271 DLRSIDVDILTL 282 (328)
Q Consensus 271 ~l~~l~~~~i~i 282 (328)
.+.++|++.+.+
T Consensus 699 ~l~~~Ga~~i~i 710 (1146)
T PRK12999 699 ELEKAGAHILAI 710 (1146)
T ss_pred HHHHcCCCEEEE
Confidence 999999998777
No 316
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.90 E-value=11 Score=34.06 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc--CCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a--G~~ 208 (328)
.+.+.+.+.+++..+.|+.-+-+.++.. ...+.+++..+++.+++.. ++.+++-|. +.++++.-.++ |.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~-~~plsIDT~----~~~v~eaaL~~~~G~~ 93 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV-DVPLCIDSP----NPAAIEAGLKVAKGPP 93 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC-CCCEEEeCC----CHHHHHHHHHhCCCCC
Confidence 3556778888888999999887765432 2234678888888887753 455544332 56666666665 655
Q ss_pred EEe-echhh--HHHHH--------hhh------cCCCCCH----HHHHHHHHHHHHhCCCC---eEEEeEEEEc-CCCHH
Q 020304 209 VFA-HNIET--VKRLQ--------RIV------RDPRAGY----EQSLEVLKHAKLSKKGL---ITKSSIMLGL-GESDD 263 (328)
Q Consensus 209 ~i~-~~~et--~~~~~--------~~~------~~~~~~~----~~~l~~i~~~~~~~~Gi---~v~~~~ivGl-gEt~e 263 (328)
-++ ++.+. .+.+. ..+ ++...+. +...+.++.+.+ .|+ .+..+-.+|. |-+.+
T Consensus 94 iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~--~GI~~~~IilDPgi~~~~~~~~ 171 (261)
T PRK07535 94 LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADE--YGIPPEDIYIDPLVLPLSAAQD 171 (261)
T ss_pred EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH--cCCCHhHEEEeCCCCcccCChH
Confidence 443 12211 11111 111 0011123 334455666777 999 4777777774 66655
Q ss_pred HH---HHHHHHHHhC
Q 020304 264 DL---KEAMADLRSI 275 (328)
Q Consensus 264 ~~---~~~l~~l~~l 275 (328)
+. .+.++.+++.
T Consensus 172 ~~~~~l~~i~~l~~~ 186 (261)
T PRK07535 172 AGPEVLETIRRIKEL 186 (261)
T ss_pred HHHHHHHHHHHHHHh
Confidence 55 4445555554
No 317
>PRK15452 putative protease; Provisional
Probab=87.85 E-value=3 Score=40.65 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=60.9
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l 272 (328)
+.+.++...++|.|.++++.+.+..-.+ . ...+.+++.++++.+++ .|.++...+ ++. .+..+.+.+.++.+
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~-~--~~f~~edl~eav~~ah~--~g~kvyvt~n~i~~-e~el~~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVR-N--NEFNHENLALGINEAHA--LGKKFYVVVNIAPH-NAKLKTFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhh-c--cCCCHHHHHHHHHHHHH--cCCEEEEEecCcCC-HHHHHHHHHHHHHH
Confidence 7899999999999999998876543111 1 25688999999999999 998754432 321 33455677777888
Q ss_pred HhCCCCEEeee
Q 020304 273 RSIDVDILTLG 283 (328)
Q Consensus 273 ~~l~~~~i~i~ 283 (328)
.++|+|-+-+.
T Consensus 86 ~~~gvDgvIV~ 96 (443)
T PRK15452 86 IAMKPDALIMS 96 (443)
T ss_pred HhCCCCEEEEc
Confidence 89999977664
No 318
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=87.62 E-value=19 Score=31.78 Aligned_cols=164 Identities=24% Similarity=0.242 Sum_probs=95.0
Q ss_pred CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE-EEeCCCC----CC-HHHHH
Q 020304 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE-CLTSDFR----GD-LRAVE 200 (328)
Q Consensus 127 ~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~-~~t~~~~----~~-~e~l~ 200 (328)
+.....|..+...+......|+++|.+.-....++ +...+.+..+.+.++...++..+. +.-.+.. .+ .++.+
T Consensus 60 GDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~ 138 (235)
T PF04476_consen 60 GDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPE 138 (235)
T ss_pred cCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHH
Confidence 34445566665556666778999887731111111 111244455556666654454443 2223321 23 47788
Q ss_pred HHHHcCCcEEeechhhHHH----HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 201 TLVHSGLDVFAHNIETVKR----LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 201 ~L~~aG~~~i~~~~et~~~----~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..+++|++.+-++ |..+ ++. ..+.++.-+.++.+|+ .|+ +.|+ |-=. .+.+..|+.+
T Consensus 139 ~a~~aG~~gvMlD--Ta~Kdg~~L~d-----~~~~~~L~~Fv~~ar~--~gL------~~aLAGSL~---~~di~~L~~l 200 (235)
T PF04476_consen 139 IAAEAGFDGVMLD--TADKDGGSLFD-----HLSEEELAEFVAQARA--HGL------MCALAGSLR---FEDIPRLKRL 200 (235)
T ss_pred HHHHcCCCEEEEe--cccCCCCchhh-----cCCHHHHHHHHHHHHH--ccc------hhhccccCC---hhHHHHHHhc
Confidence 8999999988763 3222 333 3578889999999999 886 4566 4321 1345677789
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHH
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYG 311 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~ 311 (328)
++|.+.|---+ ..........+.++...++++..
T Consensus 201 ~pD~lGfRGAv--C~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 201 GPDILGFRGAV--CGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred CCCEEEechhh--CCCCCcCccccCHHHHHHHHHhc
Confidence 99999982111 11111122367888888877653
No 319
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.57 E-value=23 Score=32.49 Aligned_cols=136 Identities=12% Similarity=0.096 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+... +...+.+.+..+++.+.+.. .+.+. +.-|.-.+.+.+..-.++|++++-+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~--~~~~~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSVM~ 103 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGT--FKHIALEEIYALCSAYSTTY-NMPLA-LHLDHHESLDDIRRKVHAGVRSAMI 103 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcch--hhhCCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeEee
Confidence 34556677777777765443332221 22223678888888887764 56664 3445555888888888999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCC-----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGE-----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgE-----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ + ..+.+...++++.++. .|+.|-+-+ |=|-.+ . ..+-.+..+|+++.|+|.+.
T Consensus 104 DgS~lp-~-------eeNi~~T~evv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 173 (286)
T PRK12738 104 DGSHFP-F-------AENVKLVKSVVDFCHS--QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLA 173 (286)
T ss_pred cCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEE
Confidence 543222 1 1134556678888888 888765443 322211 1 12566788999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 174 v 174 (286)
T PRK12738 174 V 174 (286)
T ss_pred e
Confidence 7
No 320
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=87.57 E-value=13 Score=29.58 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEE-EEeCC------------CCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVE-CLTSD------------FRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYE 232 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~-~~t~~------------~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~ 232 (328)
.+.+..+.+.+++.+|+..+. ++++. ...-++.++.|.+.|++++.+-. ++ .. ++..++
T Consensus 16 ~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~P-----l~-l~--~G~e~~ 87 (127)
T cd03412 16 EKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQS-----LH-II--PGEEYE 87 (127)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEe-----Ce-eE--CcHHHH
Confidence 467888888888888987765 45531 12136888899999988887621 11 11 134466
Q ss_pred HHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHh
Q 020304 233 QSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRS 274 (328)
Q Consensus 233 ~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~ 274 (328)
+..+.++..+. ++.. +.+|- +.+.+|....+..+.+
T Consensus 88 di~~~v~~~~~--~~~~----i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 88 KLKREVDAFKK--GFKK----IKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred HHHHHHHHHhC--CCce----EEEccCCCCCHHHHHHHHHHHHh
Confidence 77777766654 5544 34443 6778888777766643
No 321
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.56 E-value=8.6 Score=34.21 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=49.3
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc-H--------------HHHHHHHHHHHHhCCCcEEEEEe--CCCCC-
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG-S--------------GHFARTVKAMKKQKPDIMVECLT--SDFRG- 194 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~-~--------------~~l~~li~~ik~~~~~~~i~~~t--~~~~~- 194 (328)
.+...+.++.+.+.|++.+.+.=--.+...|+. . +...++++.+++.. ++.+..++ +....
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQY 91 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHh
Confidence 356788899999999998877410011122321 1 25677888888753 34444322 22111
Q ss_pred -CHHHHHHHHHcCCcEEee
Q 020304 195 -DLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 195 -~~e~l~~L~~aG~~~i~~ 212 (328)
-++.++.++++|++.+.+
T Consensus 92 G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 92 GLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CHHHHHHHHHHCCCcEEEE
Confidence 278899999999999987
No 322
>PLN02591 tryptophan synthase
Probab=87.54 E-value=16 Score=32.83 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHHHHH
Q 020304 228 RAGYEQSLEVLKHAK 242 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~ 242 (328)
+.+.++.++.++.++
T Consensus 60 G~~~~~~~~~~~~~r 74 (250)
T PLN02591 60 GTTLDSVISMLKEVA 74 (250)
T ss_pred CCCHHHHHHHHHHHh
Confidence 445555555555554
No 323
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=87.51 E-value=6.8 Score=35.97 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=66.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCC--CCCCCcHHHHHHHHHHHHHhCCC-cEEEEEeCCCCC-C----HHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRD--DIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRG-D----LRAVETLV 203 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~--~l~~~~~~~l~~li~~ik~~~~~-~~i~~~t~~~~~-~----~e~l~~L~ 203 (328)
+..++.+.++.+.+.|++.|+..+|+++ +.+.....+-.++++.+|....+ +.+.+..+.+.. . .+.+..|+
T Consensus 90 n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~lk 169 (291)
T COG0685 90 NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRLK 169 (291)
T ss_pred CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHHH
Confidence 4567788999999999999999989885 22211035778899999876545 455432222211 1 22333333
Q ss_pred ---HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 204 ---HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 204 ---~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
++|.+.+. .. .-++.+.+.+-.+.+++ .|+. .-++.|+
T Consensus 170 rKv~aGAd~~i---------TQ----~~fd~e~~~~~~~~~~~--~g~~--~pI~~Gi 210 (291)
T COG0685 170 RKVDAGADFFI---------TQ----FFFDVEAFERFAERVRA--AGID--IPIIPGI 210 (291)
T ss_pred HHHhcchHHHH---------HH----HccCHHHHHHHHHHHHh--cCCC--CCeeecc
Confidence 35544321 11 13567777777888888 7763 3456666
No 324
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=87.48 E-value=16 Score=33.11 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=69.4
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCC------CcHHHHHHHHHHHHHhC-CCcEEE--EEeCC--CCCC-H---
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK-PDIMVE--CLTSD--FRGD-L--- 196 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~l~~li~~ik~~~-~~~~i~--~~t~~--~~~~-~--- 196 (328)
+..++.+.+..+.+.|++.+++.+|+++...+ ....+-.++++.++... +++.+. ++..+ ...+ +
T Consensus 71 n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~ 150 (274)
T cd00537 71 NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDI 150 (274)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHH
Confidence 34677888888999999999998888764431 23456788888888753 233332 22211 1112 2
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDL 265 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~ 265 (328)
+.+++=.++|.+.+.- . .-++.+.+.+.++.+++ .|+. .-++.|+ + .+...+
T Consensus 151 ~~L~~Ki~aGA~f~iT---------Q----~~fd~~~~~~~~~~~~~--~gi~--vPIi~GI~p~~s~~~l 204 (274)
T cd00537 151 KRLKRKVDAGADFIIT---------Q----LFFDNDAFLRFVDRCRA--AGIT--VPIIPGIMPLTSYKQA 204 (274)
T ss_pred HHHHHHHHCCCCEEee---------c----ccccHHHHHHHHHHHHH--cCCC--CCEEeeccccCCHHHH
Confidence 3333334667765431 1 13456777777777888 8863 4467777 4 344443
No 325
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=87.46 E-value=2.3 Score=36.60 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+.++..+.++.+.+.|++-+-+|--. +...++++.+++.+|++.+-+ +..++.+.++...++|.+.+.
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t---------~~a~~~I~~l~~~~p~~~vGA---GTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRT---------PNALEAIEALRKEFPDLLVGA---GTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTS---------TTHHHHHHHHHHHHTTSEEEE---ES--SHHHHHHHHHHT-SEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHHCCCCeeEE---EeccCHHHHHHHHHcCCCEEE
Confidence 46778999999999999988776322 235678888888889887754 344699999999999988654
No 326
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.44 E-value=19 Score=33.39 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=82.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCC----CCC-----CCcHHHHHHHHHHHHHhCC-CcEEEEE-eCCCCC---CH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD----DIP-----DGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRG---DL 196 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~----~l~-----~~~~~~l~~li~~ik~~~~-~~~i~~~-t~~~~~---~~ 196 (328)
.+++++.+.++.+.+.|++.|-|-.|-|. ... -.+++.+.++++.+++..+ ++.+.+= ..+... ..
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 35667777788888889998877655532 011 1246889999999998753 3444432 222211 24
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC--CCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG--ESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg--Et~e~~~~~l~~l~~ 274 (328)
+.++.+.++|++.+.++..+....+. ++..+| +.++.+++. .+++ ++|-| .|.++..+.+ ..
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y~---g~~~~~----~~i~~ik~~-~~iP-----Vi~nGdI~t~~da~~~l---~~ 215 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGYR---AEHINW----QAIGEIRQR-LTIP-----VIANGEIWDWQSAQQCM---AI 215 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCCC---CCcccH----HHHHHHHhh-cCCc-----EEEeCCcCCHHHHHHHH---hc
Confidence 78899999999999987655332222 112244 445555541 3343 34443 4666665554 56
Q ss_pred CCCCEEeeec
Q 020304 275 IDVDILTLGQ 284 (328)
Q Consensus 275 l~~~~i~i~~ 284 (328)
-|+|.+.+..
T Consensus 216 ~g~DgVmiGR 225 (312)
T PRK10550 216 TGCDAVMIGR 225 (312)
T ss_pred cCCCEEEEcH
Confidence 7899888864
No 327
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=87.36 E-value=3.3 Score=35.93 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++++..+.++.+.+.|++-+-++--. +...+.++.+++.+|++.+-+ +..++.+.++...++|.+.+
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGA---GTVl~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGA---GTVLNPEQLRQAVDAGAQFI 84 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEE---EeCCCHHHHHHHHHcCCCEE
Confidence 45677899999999999987776311 345678888888888766644 44568999999999998876
No 328
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.24 E-value=22 Score=32.09 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=8.2
Q ss_pred HHHHHHHh-cCCceeee
Q 020304 306 FWKAYGES-IGFRYVAS 321 (328)
Q Consensus 306 ~l~~~~~~-~G~~~~~~ 321 (328)
+++.++.. -||-|+.+
T Consensus 159 ri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 159 RIQKIARAAPGCIYLVS 175 (263)
T ss_pred HHHHHHHhCCCcEEEEc
Confidence 34444433 45777654
No 329
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=87.08 E-value=8.3 Score=35.16 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
++.++.+.++|++.+.+.--+.+ .+ ..+.+++.+.++.+.+...| .+-+|+|. +.+.++..+.++.+++
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE-~~------~Lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGE-FY------SLTDEERKELLEIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTT-GG------GS-HHHHHHHHHHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCcc-cc------cCCHHHHHHHHHHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhh
Confidence 35677777888888877433322 11 24667777777766553333 12367788 6688888888999999
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
+|++.+.+
T Consensus 95 ~Gad~v~v 102 (289)
T PF00701_consen 95 AGADAVLV 102 (289)
T ss_dssp TT-SEEEE
T ss_pred cCceEEEE
Confidence 99887655
No 330
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.07 E-value=3.2 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-+|--+ +...+.++.+++.+|++.+-+ +..+|.+.++...++|.+.+.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t---------p~a~~~I~~l~~~~~~~~vGA---GTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT---------PAALDAIRAVAAEVEEAIVGA---GTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEee---EeCcCHHHHHHHHHcCCCEEE
Confidence 45677899999999999977776322 335677888888888766543 445689999999999988664
No 331
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=86.89 E-value=25 Score=32.23 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=85.1
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.+...++.+.+.+..-|.-.+...-.+. .+.+.+..+++.+.+... ++.+. +.-|.-.+.+.+....++|++++-
T Consensus 28 ~e~~~avi~AAe~~~sPvIiq~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftSVM 105 (285)
T PRK07709 28 LEWTQAILAAAEEEKSPVILGVSEGAARHM-TGFKTVVAMVKALIEEMNITVPVA-IHLDHGSSFEKCKEAIDAGFTSVM 105 (285)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhc-CCHHHHHHHHHHHHHHcCCCCcEE-EECCCCCCHHHHHHHHHcCCCEEE
Confidence 345566777777766654433322211120 236788888888876532 25553 445555578999999999999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCC-------HHHHHHHHHHHHhCCCCEEee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt-------~e~~~~~l~~l~~l~~~~i~i 282 (328)
++-..++ +- .+.+...++++.++. .|+.|-+-+ |=|-.+. ..+-.+..+|+++.|+|.+.+
T Consensus 106 ~DgS~lp-~e-------eNi~~Trevv~~Ah~--~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAv 175 (285)
T PRK07709 106 IDASHHP-FE-------ENVETTKKVVEYAHA--RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAP 175 (285)
T ss_pred EeCCCCC-HH-------HHHHHHHHHHHHHHH--cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEE
Confidence 7533221 11 133455678888888 888765432 3222111 236678889999999998776
No 332
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.71 E-value=4.2 Score=36.68 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-----EcC--C------CH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-----GLG--E------SD 262 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-----Glg--E------t~ 262 (328)
++.++.++++|++.+-+........... ...+.++..+.-+.+.+ .|+.+.+...- .++ + ..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~~~~~~l~~~l~~--~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLAR---LDWSKEERLSLVKAIYE--TGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCccccccc---ccCCHHHHHHHHHHHHH--cCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence 6788888888888877754321110000 12344455555556677 88875532111 111 1 23
Q ss_pred HHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCC--CCCHHHHHHHHHHHHhcCCceee
Q 020304 263 DDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKE--YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~--~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+.+...++..+.+|+..+.+..+- ......... ....+.+..+.+++.+.|++...
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcc--cccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 445677777788888877652110 000000000 00123355666677777776554
No 333
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=86.66 E-value=10 Score=32.83 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=49.3
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+....+.++.+.+.|++.+.+.-.+.+..+. .....+.++.+++..+ .+.+...+++ ..+.++.+.++|++.+.
T Consensus 15 ~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~v~ 89 (220)
T PRK05581 15 FARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADIIT 89 (220)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCEEE
Confidence 3456788899999999999884222211111 1234667778876543 3345555553 35677888999999987
Q ss_pred ech
Q 020304 212 HNI 214 (328)
Q Consensus 212 ~~~ 214 (328)
+..
T Consensus 90 vh~ 92 (220)
T PRK05581 90 FHV 92 (220)
T ss_pred Eee
Confidence 643
No 334
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.62 E-value=15 Score=32.76 Aligned_cols=87 Identities=7% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHH--HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRL--QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMAD 271 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~--~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~ 271 (328)
-|.-.++.+.++|++.+.++--..... +.-. ...+.++.+..++.+.+.....++.+++=.|+|++.++..++.+.
T Consensus 20 yD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~--~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~ 97 (240)
T cd06556 20 YDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDT--LPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKT 97 (240)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCC--CCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHH
Confidence 378888999999999999865443322 1211 146899999999988763234578999999998888999999999
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++-+.+
T Consensus 98 l~~aGa~gv~i 108 (240)
T cd06556 98 FMRAGAAGVKI 108 (240)
T ss_pred HHHcCCcEEEE
Confidence 98899887766
No 335
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=86.62 E-value=6.8 Score=38.31 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=84.4
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+-.+.++.+.+.|++-|.+...+. ......+.++.+++.+|++.+.+ +...+.+.++.+.++|+|.+-+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~---G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIA---GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEE---EeCCCHHHHHHHHHhCCCEEEECC
Confidence 345677788899999888865442 13678899999999888877654 233589999999999999997653
Q ss_pred hhHH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEE--EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~-~~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-... -..+.+.+-+ -...-..++.+.+++ .|++ +|. | -.|..|+.+.+ .+|++.+.+...+
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~--~~vp----viadGG-i~~~~di~kAl----a~GA~~V~~G~~~ 359 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQ--SGIP----VIADGG-IRYSGDIVKAL----AAGADAVMLGSLL 359 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhh--cCCe----EEEeCC-CCCHHHHHHHH----HcCCCEEEECchh
Confidence 1110 0111111011 133444555566666 6766 344 3 24556665544 5799988887655
No 336
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=86.53 E-value=21 Score=31.36 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=69.7
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEeechh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~~~~e 215 (328)
++.++.+++.|+..+++..-+.+..- +.+.+.++++..... +++++.. -+...| .+.++.|.+.|+.++.-+=.
T Consensus 76 ~~DI~~~~~lG~~GVV~G~lt~dg~i--D~~~le~Li~aA~gL--~vTFHrA-FD~~~d~~~ale~li~~Gv~RILTsGg 150 (241)
T COG3142 76 LEDIRLARELGVQGVVLGALTADGNI--DMPRLEKLIEAAGGL--GVTFHRA-FDECPDPLEALEQLIELGVERILTSGG 150 (241)
T ss_pred HHHHHHHHHcCCCcEEEeeecCCCcc--CHHHHHHHHHHccCC--ceeeehh-hhhcCCHHHHHHHHHHCCCcEEecCCC
Confidence 57778888999999988654433222 256666666654322 3444321 122224 58899999999999864211
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 216 t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+..+-+..++.+.++-.| ...+|.|-|-+.+.+.+.. ...|+..++.
T Consensus 151 ------------~~sa~eg~~~l~~li~~a~g---ri~Im~GaGV~~~N~~~l~---~~tg~~e~H~ 199 (241)
T COG3142 151 ------------KASALEGLDLLKRLIEQAKG---RIIIMAGAGVRAENIAELV---LLTGVTEVHG 199 (241)
T ss_pred ------------cCchhhhHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHH---HhcCchhhhh
Confidence 12333333333333321122 2347888888888776543 4455555544
No 337
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=86.39 E-value=15 Score=36.48 Aligned_cols=170 Identities=15% Similarity=0.083 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe-e
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA-H 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~-~ 212 (328)
+++.+.++++.+.|++-|-+.++.. -+ +.+.+..+++.+++.. ++.+++-| .+.+.++.-.++|.+.++ +
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st--~p--~~~~v~~~V~~l~~~~-~~pISIDT----~~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF--DD--DPDVVKEKVKTALDAL-DSPVIADT----PTLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC--CC--cHHHHHHHHHHHHhhC-CCcEEEeC----CCHHHHHHHHHcCCCEEEEC
Confidence 6678888899999999887754432 11 2567889999998763 45665533 367888888888988765 2
Q ss_pred chhhHHHHHhhhcC-----------CCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEEcCCCHHHHHHHHHHHHh----CC
Q 020304 213 NIETVKRLQRIVRD-----------PRAGYEQSLEVLKHAKLSKKGL-ITKSSIMLGLGESDDDLKEAMADLRS----ID 276 (328)
Q Consensus 213 ~~et~~~~~~~~~~-----------~~~~~~~~l~~i~~~~~~~~Gi-~v~~~~ivGlgEt~e~~~~~l~~l~~----l~ 276 (328)
+-+..+.+...+.. ....++...+.++.+.+ .|+ .+..+-++|+ ...++.+.+..++. ++
T Consensus 236 s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~--~Gi~~IIlDPglg~--~~~~l~~sL~~l~~~r~~~~ 311 (499)
T TIGR00284 236 DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRT--SGYSKVAADPSLSP--PLLGLLESIIRFRRASRLLN 311 (499)
T ss_pred CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHH--CCCCcEEEeCCCCc--chHHHHHHHHHHHHHHHhcC
Confidence 22223333211110 12345778888899999 999 4555555554 22345666666653 45
Q ss_pred CC-EEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 277 VD-ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 277 ~~-~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
.. .+++++.. .+. ..+.. .--..+..++.+.|...+-++.
T Consensus 312 ~Pil~GvSNvt---el~--daDs~--g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 312 VPLVFGAANVT---ELV--DADSH--GVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred CcEEEeecccc---CCC--ccchh--HHHHHHHHHHHHcCCCEEEEcC
Confidence 33 23443232 110 00111 1123344667778887776664
No 338
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=86.14 E-value=28 Score=32.18 Aligned_cols=173 Identities=17% Similarity=0.114 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+... ....+.+.+..+++.+.+..+.+.+. +.-+.-.+.|.+.+-.++|++++-+
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~s~~~--~~~~g~~~~~~~~~~~a~~~~~VPVa-lHLDHg~~~e~i~~ai~~GftSVM~ 103 (307)
T PRK05835 27 FEMLNAIFEAGNEENSPLFIQASEGA--IKYMGIDMAVGMVKIMCERYPHIPVA-LHLDHGTTFESCEKAVKAGFTSVMI 103 (307)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccH--HhhCChHHHHHHHHHHHHhcCCCeEE-EECCCCCCHHHHHHHHHcCCCEEEE
Confidence 34556677777776665443332221 21123577888888887765446764 4555555889999999999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gE----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ +. .+.+...++++.++. .|+.|-+-+ +=|- ++ . .-+-.+..+|+++.|+|.+.
T Consensus 104 DgS~l~-~e-------eNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LA 173 (307)
T PRK05835 104 DASHHA-FE-------ENLELTSKVVKMAHN--AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLA 173 (307)
T ss_pred eCCCCC-HH-------HHHHHHHHHHHHHHH--cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEE
Confidence 532221 11 133455678888898 888765443 3232 11 0 11356788999999999877
Q ss_pred eecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 282 LGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 282 i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
+. + .|--.......-+.-.++.|+++....++..|-=
T Consensus 174 va-i--Gt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLH 210 (307)
T PRK05835 174 PA-I--GTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLH 210 (307)
T ss_pred Ec-c--CccccccCCCCCCccCHHHHHHHHHHhCCCEEEe
Confidence 63 3 2221110000112334667777777777766543
No 339
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.93 E-value=27 Score=31.82 Aligned_cols=167 Identities=22% Similarity=0.199 Sum_probs=93.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCC------CCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHHHc
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRD------DIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~------~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~~a 205 (328)
+++..+.++.+.+.|++.|-+.-+-+. .+. .+.+.+.++++.+++.. ++.+.+ ++++..-..+.++.+.++
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~ 178 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHc
Confidence 567788888888889997766432211 111 23578889999999863 333332 333321134778889999
Q ss_pred CCcEEeec---------hhhHHH-HH---hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHHHHHHH
Q 020304 206 GLDVFAHN---------IETVKR-LQ---RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMA 270 (328)
Q Consensus 206 G~~~i~~~---------~et~~~-~~---~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~~~~l~ 270 (328)
|+|.+.+. .++... +. ....+ .......++.++.+++. .+++ ++|. | .+.+++.+.+
T Consensus 179 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~~~~~~~i~~i~~~-~~ip-----ii~~GGI~~~~da~~~l- 250 (296)
T cd04740 179 GADGLTLINTLKGMAIDIETRKPILGNVTGGLSG-PAIKPIALRMVYQVYKA-VEIP-----IIGVGGIASGEDALEFL- 250 (296)
T ss_pred CCCEEEEECCCcccccccccCceeecCCcceecC-cccchHHHHHHHHHHHh-cCCC-----EEEECCCCCHHHHHHHH-
Confidence 99987641 111111 00 00110 11123355666666652 2333 4455 3 4677766655
Q ss_pred HHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 271 DLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 271 ~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.|++.+.+..-+ . ..+++...-.+.+.+.+.+.||.-+
T Consensus 251 ---~~GAd~V~igra~-----l--~~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 251 ---MAGASAVQVGTAN-----F--VDPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred ---HcCCCEEEEchhh-----h--cChHHHHHHHHHHHHHHHHcCCCCH
Confidence 3789988885322 1 1223333445667778888887643
No 340
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.76 E-value=28 Score=31.81 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.+...++.+.+.+..-|.-.+.. .+...+.+.+..+++.+.+.. ++.+. +.-+.-.+.+.+..-.++|++++-++
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g~~~~~~~~~~~A~~~-~vPV~-lHLDH~~~~e~i~~Ai~~GftSVM~D 104 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPT--NAQLSGYDYIYEIVKRHADKM-DVPVS-LHLDHGKTFEDVKQAVRAGFTSVMID 104 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHh--HHhhCCHHHHHHHHHHHHHHC-CCCEE-EECcCCCCHHHHHHHHHcCCCEEEEe
Confidence 445566777777665533322211 122123677888888877663 56664 34444457788888889999998874
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eEEEEcCCC-------HHHHHHHHHHHHhCCCCEEee
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS--SIMLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~--~~ivGlgEt-------~e~~~~~l~~l~~l~~~~i~i 282 (328)
-..++ + ..+.+...++++.++. .|+.|-+ +.+-|-.+. ..+..+..+|+++.|+|.+.+
T Consensus 105 gS~l~-~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 105 GAALP-F-------EENIAFTKEAVDFAKS--YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAV 172 (283)
T ss_pred CCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeeh
Confidence 32111 1 1134556678888898 8987533 333233110 235567789999999998776
No 341
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.71 E-value=19 Score=34.77 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCC--------CCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHH
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIP--------DGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLV 203 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~--------~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~ 203 (328)
++++.+.++.+.+.|++.+-|--+-|.... ..+.+.+.++++.+++.. ++.+.+ ++++.....+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHH
Confidence 466788888888888887766322221010 124689999999998853 333322 3444322368889999
Q ss_pred HcCCcEEee----------chhhHH--H-HHhhhcCCCCC----HHHHHHHHHHHHHhCC--CCeEEEeEEEEcC--CCH
Q 020304 204 HSGLDVFAH----------NIETVK--R-LQRIVRDPRAG----YEQSLEVLKHAKLSKK--GLITKSSIMLGLG--ESD 262 (328)
Q Consensus 204 ~aG~~~i~~----------~~et~~--~-~~~~~~~~~~~----~~~~l~~i~~~~~~~~--Gi~v~~~~ivGlg--Et~ 262 (328)
++|++.+.+ ++++.+ . ++......+.+ ..-.++.+..+++... ++. |+|.| .|.
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ip-----Iig~GGI~s~ 265 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLP-----ISGIGGIETW 265 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCC-----EEeecCcCCH
Confidence 999999883 233211 1 11000001122 2234677777666211 343 56662 466
Q ss_pred HHHHHHHHHHHhCCCCEEeee
Q 020304 263 DDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+|..+.+ . .|++.+.+.
T Consensus 266 ~da~e~i---~-aGA~~Vqi~ 282 (420)
T PRK08318 266 RDAAEFI---L-LGAGTVQVC 282 (420)
T ss_pred HHHHHHH---H-hCCChheee
Confidence 6665554 3 788877774
No 342
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.69 E-value=25 Score=31.25 Aligned_cols=141 Identities=16% Similarity=0.061 Sum_probs=83.3
Q ss_pred HHHHHHHCCCcEEEEEe-------ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC----HHHHHHHHHcCC
Q 020304 139 TAKAIASWGVDYIVLTS-------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGL 207 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~g-------g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~----~e~l~~L~~aG~ 207 (328)
.++.+.+.|++-+.++| |.++ ...-..+.+.+.++.|.+.. .+.+.+--+.+..+ .+.++.+.++|+
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 34556667999888876 2222 21122466666666666542 33443311111113 355788889999
Q ss_pred cEEeechhhHHHHHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-----cC-CCHHHHHHHHHHHHhCCCCEE
Q 020304 208 DVFAHNIETVKRLQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LG-ESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-----lg-Et~e~~~~~l~~l~~l~~~~i 280 (328)
..+.+-.++..+-..... ..-.+.++..+.++.+++...++ ...-++.+ .| +..++..+-.+...+.|.|.+
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v 177 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGI 177 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEE
Confidence 999985544322110000 01347888888888887754453 23334444 44 678888888899999999988
Q ss_pred ee
Q 020304 281 TL 282 (328)
Q Consensus 281 ~i 282 (328)
.+
T Consensus 178 ~v 179 (243)
T cd00377 178 FV 179 (243)
T ss_pred Ee
Confidence 77
No 343
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=85.55 E-value=23 Score=30.65 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=73.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
....++.+.++.+.+.|+..+.+..-+. ...+.. +.++.+++. .++.+.. -++..+++.++.+.++|.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~~----~~~~~i~~~-v~iPi~~--~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGSL----EDLRAVREA-VSLPVLR--KDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCCH----HHHHHHHHh-cCCCEEE--CCeecCHHHHHHHHHcCCCEE
Confidence 4566789999999999999887764332 221222 445555554 2555543 345557889999999999999
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.++... ...+...+.++.++. .|+.+ ++.. .+.++ +..+.+++++.+.++
T Consensus 99 ~l~~~~------------~~~~~~~~~~~~~~~--~g~~~----~v~v-~~~~e----~~~~~~~g~~~i~~t 148 (217)
T cd00331 99 LLIVAA------------LDDEQLKELYELARE--LGMEV----LVEV-HDEEE----LERALALGAKIIGIN 148 (217)
T ss_pred EEeecc------------CCHHHHHHHHHHHHH--cCCeE----EEEE-CCHHH----HHHHHHcCCCEEEEe
Confidence 875321 122444445555556 66654 3322 24454 344455677776653
No 344
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=85.53 E-value=21 Score=30.06 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.++..+.++.+.+.|+..+.+--.+ +. .+.+.++++.+.+.. .+..+.+ ++ ..+...+.|++.+
T Consensus 11 ~~~~~~~l~~~~~~gv~~v~lR~k~---~~---~~~~~~~a~~l~~~~~~~~~~lii--n~------~~~la~~~~~dGv 76 (180)
T PF02581_consen 11 GDDFLEQLEAALAAGVDLVQLREKD---LS---DEELLELARRLAELCQKYGVPLII--ND------RVDLALELGADGV 76 (180)
T ss_dssp TCHHHHHHHHHHHTT-SEEEEE-SS---S----HHHHHHHHHHHHHHHHHTTGCEEE--ES-------HHHHHHCT-SEE
T ss_pred cchHHHHHHHHHHCCCcEEEEcCCC---CC---ccHHHHHHHHHHHHhhcceEEEEe--cC------CHHHHHhcCCCEE
Confidence 4556788888889999988885322 22 355555555554321 2444433 32 2334556889998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCC
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPT 289 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PT 289 (328)
.++.+. ....+..+. .. ++. ++|. -.+.++ +..+.+.|+|++.++++. ||
T Consensus 77 Hl~~~~------------~~~~~~r~~----~~--~~~------~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf-~T 127 (180)
T PF02581_consen 77 HLGQSD------------LPPAEARKL----LG--PDK------IIGASCHSLEE----AREAEELGADYVFLGPVF-PT 127 (180)
T ss_dssp EEBTTS------------SSHHHHHHH----HT--TTS------EEEEEESSHHH----HHHHHHCTTSEEEEETSS---
T ss_pred Eecccc------------cchHHhhhh----cc--cce------EEEeecCcHHH----HHHhhhcCCCEEEECCcc-CC
Confidence 886421 122222111 12 333 5676 677777 455568999999998655 65
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 290 p~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.-. +..++..++.++++....-...++.|
T Consensus 128 ~sk----~~~~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 128 SSK----PGAPPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp SSS----SS-TTCHHHHHHHHHHHTSSCEEEES
T ss_pred CCC----ccccccCHHHHHHHHHhCCCCEEEEc
Confidence 542 22244456677777777778888886
No 345
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.35 E-value=21 Score=32.03 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccC-CCC----CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDR-DDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~-~~l----~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
.+++++.+.++++.+.|++-|-+.++.. |.. ...+.+++..+++.+++.. ++.+++-| .++++++.-.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT----~~~~v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT----FNAEVAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC----CcHHHHHHHHHh
Confidence 4567888899999999999777754321 211 1123467888888887653 45554322 145666655566
Q ss_pred CCcEE
Q 020304 206 GLDVF 210 (328)
Q Consensus 206 G~~~i 210 (328)
|.+-+
T Consensus 96 g~~iI 100 (258)
T cd00423 96 GADII 100 (258)
T ss_pred CCCEE
Confidence 64443
No 346
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=85.19 E-value=15 Score=34.34 Aligned_cols=136 Identities=24% Similarity=0.207 Sum_probs=81.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCC----------CCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCC----CCC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD----------DIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDF----RGD 195 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~----------~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~----~~~ 195 (328)
.+|+...+.++.+.+.|+..|-|--|=|. .|. .+++.+.++++++++..+++.+++=. .+. ...
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll-~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~ 154 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALL-KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILA 154 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhc-CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccH
Confidence 35656677777888899888766433211 111 24799999999999875434443211 111 123
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC--CHHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE--SDDDLKEAMADLR 273 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE--t~e~~~~~l~~l~ 273 (328)
.+.++.+.++|++.+.++.-|....+. ...+|+ .|+.+++....+ .++|-|+ |.++..+ .++
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~----~~ad~~----~I~~vk~~~~~i-----pvi~NGdI~s~~~a~~---~l~ 218 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYL----GPADWD----YIKELKEAVPSI-----PVIANGDIKSLEDAKE---MLE 218 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCC----CccCHH----HHHHHHHhCCCC-----eEEeCCCcCCHHHHHH---HHH
Confidence 579999999999999987766554443 123444 444444422223 3555554 6666554 455
Q ss_pred hCCCCEEeee
Q 020304 274 SIDVDILTLG 283 (328)
Q Consensus 274 ~l~~~~i~i~ 283 (328)
..|+|-+.+.
T Consensus 219 ~tg~DgVMig 228 (323)
T COG0042 219 YTGADGVMIG 228 (323)
T ss_pred hhCCCEEEEc
Confidence 5677776664
No 347
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.17 E-value=15 Score=32.24 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++.+-+|--.+. ..+.+.++.+..++.+|++.+-+ +..++.+.++...++|.+.+-
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~-----a~~~i~~l~~~~~~~~p~~~vGa---GTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF-----AHEVFAELVKYAAKELPGMILGV---GSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc-----HHHHHHHHHHHHHhhCCCeEEee---EeCcCHHHHHHHHHcCCCEEE
Confidence 4567788999999999997766532221 13555555556666667766543 445689999999999988764
Q ss_pred ---echhhHHHHH--hh-hcCCCCCHHHHHHHHH
Q 020304 212 ---HNIETVKRLQ--RI-VRDPRAGYEQSLEVLK 239 (328)
Q Consensus 212 ---~~~et~~~~~--~~-~~~~~~~~~~~l~~i~ 239 (328)
.+.+.++.-+ .. +-+.-.|..++.++++
T Consensus 97 sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~ 130 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEE 130 (222)
T ss_pred CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 2444444321 11 1123346666666553
No 348
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.12 E-value=18 Score=31.51 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHH-HHh-hhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKR-LQR-IVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~-~~~-~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l 272 (328)
.+.++.++++|+|.+.++.-.... .++ ... .--.+.+...+.++.+++. .++.+...+=.|..+. ++..+.+..+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~~~v~vk~r~~~~~~-~~~~~~~~~l 147 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VPIPVTVKIRLGWDDE-EETLELAKAL 147 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cCCCEEEEEeeccCCc-hHHHHHHHHH
Confidence 357888888999999886543222 111 100 0012566677777777663 3444444443343222 5788889999
Q ss_pred HhCCCCEEeee
Q 020304 273 RSIDVDILTLG 283 (328)
Q Consensus 273 ~~l~~~~i~i~ 283 (328)
.+.|++.+.+.
T Consensus 148 ~~~Gvd~i~v~ 158 (231)
T cd02801 148 EDAGASALTVH 158 (231)
T ss_pred HHhCCCEEEEC
Confidence 99999999874
No 349
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.07 E-value=32 Score=32.15 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCH-HHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGD--LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGY-EQSLEVLKHAK 242 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~--~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~-~~~l~~i~~~~ 242 (328)
.+.+.+.++.+++.. +..+.+...+...+ .+.++.+.++|++.+.+|+-.... ....+ +.+. +.+.+.++.++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~--g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS--GAEVEQRYLDILRAVK 161 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc--cccHHHHHHHHHHHHH
Confidence 577888888777653 44444433332212 267788888999999887632110 01111 2223 34667777776
Q ss_pred HhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCc---c-------cCCCCCHHHHHHHHHHHH
Q 020304 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL---T-------VKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 243 ~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~---~-------~~~~~~~~~~~~l~~~~~ 312 (328)
+. .++++.+- ++-...++.+.++.+.+.|++.+.+.+-........ . .-+.+.+..+..++++..
T Consensus 162 ~~-~~iPV~vK----l~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~ 236 (334)
T PRK07565 162 SA-VSIPVAVK----LSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG 236 (334)
T ss_pred hc-cCCcEEEE----eCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh
Confidence 62 24443333 211234677888899999999887754431100000 0 011223344455555555
Q ss_pred hcCCceeeec
Q 020304 313 SIGFRYVASG 322 (328)
Q Consensus 313 ~~G~~~~~~g 322 (328)
..++..+.+|
T Consensus 237 ~~~ipIig~G 246 (334)
T PRK07565 237 RVGADLAATT 246 (334)
T ss_pred hcCCCEEEEC
Confidence 6677777665
No 350
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=85.06 E-value=21 Score=32.42 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCe-EEEeEEEEcC-CCHHHHHHHHHHHHh
Q 020304 229 AGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLG-ESDDDLKEAMADLRS 274 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGlg-Et~e~~~~~l~~l~~ 274 (328)
.+.++.++..+.+.+ .|.. +.+.--+-+. -+.+++.+++..+.+
T Consensus 75 ~~~~~ai~~a~~a~~--~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 75 LNLEESIELARAAKS--FGIYAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 455666666666666 6654 1111011112 245666666666655
No 351
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.06 E-value=30 Score=31.52 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+.. .+.+. +.-|.-.+.+.+..-.++|++++-+
T Consensus 23 ~e~~~avi~AAe~~~sPvIi~~~~~~~~~~--~~~~~~~~~~~~a~~~-~VPV~-lHLDH~~~~~~i~~ai~~GftSVMi 98 (276)
T cd00947 23 LETLKAILEAAEETRSPVILQISEGAIKYA--GLELLVAMVKAAAERA-SVPVA-LHLDHGSSFELIKRAIRAGFSSVMI 98 (276)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhC--CHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCCEEEe
Confidence 344566777777777554433322111122 3578888888877653 55663 3445555778888888999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe--EEEEcCCC-------HHHHHHHHHHHHhCCCCEEee
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS--IMLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~--~ivGlgEt-------~e~~~~~l~~l~~l~~~~i~i 282 (328)
+...++ + ..+.+...++++.+++ .|+.|-+- -|-|-.+. ..+..+..+|+++.|+|.+.+
T Consensus 99 D~S~l~-~-------eeNi~~t~~vv~~ah~--~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 167 (276)
T cd00947 99 DGSHLP-F-------EENVAKTKEVVELAHA--YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAV 167 (276)
T ss_pred CCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEe
Confidence 543322 1 1234556688888899 88865543 34333111 224667889999999998777
No 352
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.02 E-value=30 Score=31.53 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+.++.+.++|+|.+-+|.-+-.. ...-..-..+.+...+.++.+++ . ++++. +-++-+.++..+.++.+.+
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~-~~~g~~~~~~~~~~~eiv~~vr~--~~~~Pv~----vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNV-KGGGMAFGTDPEAVAEIVKAVKK--ATDVPVI----VKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCC-CCCcccccCCHHHHHHHHHHHHh--ccCCCEE----EEeCCCchhHHHHHHHHHH
Confidence 366777888888888776533211 10000012456777888888887 4 55533 3333334578888899999
Q ss_pred CCCCEEeeecccCC------CCC-------CcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 275 IDVDILTLGQYLQP------TPL-------HLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 275 l~~~~i~i~~~l~P------Tp~-------~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
.|++.+.+.+.+.. |.. ....-+.+.+..++.++++....++..+..|-
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GG 239 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGG 239 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECC
Confidence 99998876543310 110 00011122334456666666667787777764
No 353
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=84.97 E-value=29 Score=31.20 Aligned_cols=159 Identities=12% Similarity=0.017 Sum_probs=88.7
Q ss_pred CCch-HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei-~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+++ .+.++...+.|++.+++..- ...+ .++++.|.+. .++.+.. .+++ ..+.++.+.++|++++.
T Consensus 36 ~~~pp~~~A~~~~~~Ga~~lHvVDL-----g~~n----~~~i~~i~~~-~~~~v~v--GGGI-r~e~v~~~l~aGa~rVv 102 (253)
T TIGR02129 36 SDKPSSYYAKLYKDDGVKGCHVIML-----GPNN----DDAAKEALHA-YPGGLQV--GGGI-NDTNAQEWLDEGASHVI 102 (253)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEEC-----CCCc----HHHHHHHHHh-CCCCEEE--eCCc-CHHHHHHHHHcCCCEEE
Confidence 4456 89999999999999988643 2111 2455555544 2455543 4454 34999999999999999
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE-----------EEc-CCCHHHHH-HHHHHHHhCCCC
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM-----------LGL-GESDDDLK-EAMADLRSIDVD 278 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i-----------vGl-gEt~e~~~-~~l~~l~~l~~~ 278 (328)
+|-..++ + +..+.+.+.+..+..-. ..+-++.+.- -|- ..|.-+.. +.++.+.+. +.
T Consensus 103 IGS~av~---~----~~i~~~~~~~i~~~fG~--~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~ 172 (253)
T TIGR02129 103 VTSWLFT---K----GKFDLKRLKEIVSLVGK--DRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CD 172 (253)
T ss_pred ECcHHHh---C----CCCCHHHHHHHHHHhCC--CCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CC
Confidence 8643222 1 22334555555544311 1233333322 122 22444555 777777777 77
Q ss_pred EEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+-+...-+. ....--.++.+++++...++..+++|
T Consensus 173 ~il~TdI~rD--------Gtl~G~dlel~~~l~~~~~ipVIASG 208 (253)
T TIGR02129 173 EFLIHAADVE--------GLCKGIDEELVSKLGEWSPIPITYAG 208 (253)
T ss_pred EEEEeeeccc--------CccccCCHHHHHHHHhhCCCCEEEEC
Confidence 7665322211 11111124555566666666666665
No 354
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.80 E-value=20 Score=33.26 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~ 273 (328)
+.++.+.++|+|.+-+|.-.-.. ..+...+. -.+.+...+.++.+++. .++++.+-+=.|..++..+..+.+..+.
T Consensus 79 ~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~g~~~~~~~~~~~a~~l~ 157 (319)
T TIGR00737 79 EAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRIGWDDAHINAVEAARIAE 157 (319)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEcccCCCcchHHHHHHHHH
Confidence 55667788899998876543221 21211100 12456677777777652 4666666555566445556778888899
Q ss_pred hCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 274 ~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+.|++.+.++... +...+ . .+..++.++++....++..+..|
T Consensus 158 ~~G~d~i~vh~r~-~~~~~---~---~~~~~~~i~~i~~~~~ipvi~nG 199 (319)
T TIGR00737 158 DAGAQAVTLHGRT-RAQGY---S---GEANWDIIARVKQAVRIPVIGNG 199 (319)
T ss_pred HhCCCEEEEEccc-ccccC---C---CchhHHHHHHHHHcCCCcEEEeC
Confidence 9999999885322 11110 0 11224445555555555555555
No 355
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.74 E-value=20 Score=32.90 Aligned_cols=167 Identities=20% Similarity=0.187 Sum_probs=91.6
Q ss_pred CCCchHHHHHHHHHCC-CcEEEEEeccC------CCCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWG-VDYIVLTSVDR------DDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLV 203 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G-~~~i~l~gg~~------~~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~ 203 (328)
+++++.+.++.+.+.| ++.|-|.-+-+ ..+. .+.+.+.++++.+++.. ++.+.+ ++++..-..+.++.+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~-~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFG-TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccc-cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 3677888888888888 88776622111 1111 23688999999999874 444432 2322211257788999
Q ss_pred HcCCcEEee-c--------hhhHHH-HH---hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHHHHH
Q 020304 204 HSGLDVFAH-N--------IETVKR-LQ---RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEA 268 (328)
Q Consensus 204 ~aG~~~i~~-~--------~et~~~-~~---~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~~~~ 268 (328)
++|+|.+.+ | .++... +. ..+.+ .......++.++.+++. .+++ ++|. | .|.++..+.
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~p~~l~~v~~i~~~-~~ip-----vi~~GGI~~~~da~~~ 252 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG-PAIKPIALRMVYQVYQA-VDIP-----IIGMGGISSAEDAIEF 252 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCC-cCcccccHHHHHHHHHh-CCCC-----EEEECCCCCHHHHHHH
Confidence 999998764 1 111110 00 00110 01112245666666652 2443 4455 3 577777766
Q ss_pred HHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 269 MADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 269 l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
+ ..|++.+.+..-+ . ..+.+...-.+.+.+++.+.|++-
T Consensus 253 l----~aGAd~V~igr~l-----l--~~P~~~~~i~~~l~~~~~~~g~~~ 291 (301)
T PRK07259 253 I----MAGASAVQVGTAN-----F--YDPYAFPKIIEGLEAYLDKYGIKS 291 (301)
T ss_pred H----HcCCCceeEcHHH-----h--cCcHHHHHHHHHHHHHHHHcCCCC
Confidence 5 2578888774221 1 112222333556677788888764
No 356
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=84.68 E-value=36 Score=32.09 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=104.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+..+++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+..+++.+. +.-+.-.+.+.+.+-.++|++++-+
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~--g~~~~~~~v~~~ae~~~~VPVa-LHLDHg~~~e~i~~Ai~~GFtSVMi 104 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYA--GDAMLRHMVLAAAEMYPDIPIC-LHQDHGNSPATCQSAIRSGFTSVMM 104 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhC--CHHHHHHHHHHHHHhcCCCcEE-EECCCCCCHHHHHHHHhcCCCEEEE
Confidence 455667777777777664443332221222 3678888888887765446663 4555555889999999999999988
Q ss_pred chhhHHHHHhhhcCCCC----CHHHHHHHHHHHHHhCCCCeEEEeE-EEE-cC-------CC------------HHHHHH
Q 020304 213 NIETVKRLQRIVRDPRA----GYEQSLEVLKHAKLSKKGLITKSSI-MLG-LG-------ES------------DDDLKE 267 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~----~~~~~l~~i~~~~~~~~Gi~v~~~~-ivG-lg-------Et------------~e~~~~ 267 (328)
+...++. .+ ..+ +.+...++++.++. .|+.|-+-+ -+| .. +. .-+-.+
T Consensus 105 DgS~l~~-~~----~~~~~eeNI~~Trevve~Ah~--~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~Pee 177 (347)
T PRK13399 105 DGSLLAD-GK----TPASYDYNVDVTRRVTEMAHA--VGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQ 177 (347)
T ss_pred eCCCCCC-CC----CccCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHH
Confidence 6543321 00 012 34456677888888 898766443 122 11 10 123668
Q ss_pred HHHHHHhCCCCEEeeecccCCCCCCc-cc--CCCCCHHHHHHHHHHHHhc-CCceeee
Q 020304 268 AMADLRSIDVDILTLGQYLQPTPLHL-TV--KEYVTPEKFDFWKAYGESI-GFRYVAS 321 (328)
Q Consensus 268 ~l~~l~~l~~~~i~i~~~l~PTp~~~-~~--~~~~~~~~~~~l~~~~~~~-G~~~~~~ 321 (328)
..+|+++.|+|.+.+. + .|--.. .. .+....-.++.++++.... ++..|-=
T Consensus 178 A~~Fv~~TgvD~LAva-i--Gt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLH 232 (347)
T PRK13399 178 AVDFVQRTGVDALAIA-I--GTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMH 232 (347)
T ss_pred HHHHHHHHCcCEEhhh-h--ccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEe
Confidence 8899999999987662 2 221110 00 1110113477888888887 5666544
No 357
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=84.48 E-value=30 Score=38.05 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=78.8
Q ss_pred CchHHHHHHHHH--CCCcEEEEEeccCCCCC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC----------CHHHHH
Q 020304 134 MEPENTAKAIAS--WGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRG----------DLRAVE 200 (328)
Q Consensus 134 ~ei~~~~~~~~~--~G~~~i~l~gg~~~~l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~----------~~e~l~ 200 (328)
.+++.++..+.+ .|+..+-+.||-..+.. ..-.+.=.+-++.+++..|++.+..+..+..+ -+..++
T Consensus 553 ~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~ 632 (1143)
T TIGR01235 553 HDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVK 632 (1143)
T ss_pred HHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHH
Confidence 355667777766 47777777766532111 00002224557778887788776644432111 145677
Q ss_pred HHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE------c--CCCHHHHHHHHHHH
Q 020304 201 TLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG------L--GESDDDLKEAMADL 272 (328)
Q Consensus 201 ~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG------l--gEt~e~~~~~l~~l 272 (328)
..++.|+|.+.+- +.+ ...+....+++.+++ .|..+...+.+- . ..|.+-+.+.++.+
T Consensus 633 ~~~~~Gidifrif----D~l--------N~~~n~~~~~~~~~~--~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 633 QAAQGGIDIFRVF----DSL--------NWVENMRVGMDAVAE--AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHcCCCEEEEC----ccC--------cCHHHHHHHHHHHHH--cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 7788899887761 111 234455566666777 777666665542 1 23566677777777
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.++|++.+.+
T Consensus 699 ~~~Gad~I~i 708 (1143)
T TIGR01235 699 EKAGAHILGI 708 (1143)
T ss_pred HHcCCCEEEE
Confidence 7777777665
No 358
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=84.47 E-value=10 Score=33.04 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.+...+..+++.|++++.++.-.. .+. ..+..+++.+.+..+++.-.-..-..+-..+-.+.+.++ +....-.
T Consensus 60 dTP~~aL~klk~~gy~eviiQ~lhi--IpG---~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~a-ik~~~pp 133 (265)
T COG4822 60 DTPIQALNKLKDQGYEEVIIQPLHI--IPG---IEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEA-IKDQIPP 133 (265)
T ss_pred CCHHHHHHHHHHccchheeeeeeee--cCc---hHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHH-HHHhcCC
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHH-HHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHA-KLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH 292 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~-~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~ 292 (328)
+.--+.+--..++..|........++.. .+ .|+ .++.++--|+.-.+...++.+++-++..+++.+++--..-+
T Consensus 134 l~k~e~~vlmgHGt~h~s~~~YacLd~~~~~--~~f---~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~H 208 (265)
T COG4822 134 LNKDEILVLMGHGTDHHSNAAYACLDHVLDE--YGF---DNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDH 208 (265)
T ss_pred cCcCeEEEEEecCCCccHHHHHHHHHHHHHh--cCC---CceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechh
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 293 LTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
....+....-+.|+.+..+.||+.
T Consensus 209 --a~nDMasddedswk~il~~~G~~v 232 (265)
T COG4822 209 --AKNDMASDDEDSWKNILEKNGFKV 232 (265)
T ss_pred --hhhhhcccchHHHHHHHHhCCcee
No 359
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.45 E-value=13 Score=33.31 Aligned_cols=100 Identities=21% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-CcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~i 210 (328)
...+..+.++.+.+.|+..+.+++.+...... ..-.++++.+++.. ++.+. .+++..+.+.+..+.+.| ++.+
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~---g~~~~~~~~i~~~~-~ipvi--a~GGi~s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKS---GYDLELTKAVSEAV-KIPVI--ASGGAGKPEHFYEAFTKGKADAA 226 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCC---CCCHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCccee
Confidence 45566788899999999999998755432221 12245677777663 45553 355656888888888877 9988
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
.++- .++. ...+.++.++.+ ++ .|+.+
T Consensus 227 ~~g~----a~~~----~~~~~~~~~~~~---~~--~gi~~ 253 (254)
T TIGR00735 227 LAAS----VFHY----REITIGEVKEYL---AE--RGIPV 253 (254)
T ss_pred eEhH----HHhC----CCCCHHHHHHHH---HH--CCCcc
Confidence 7652 3443 245666554444 46 77754
No 360
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=84.41 E-value=35 Score=31.76 Aligned_cols=153 Identities=17% Similarity=0.096 Sum_probs=83.9
Q ss_pred HHHHHHH-HCCCcEEEEE--eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-CCCCHHHHHHHHHcCC-cEEee
Q 020304 138 NTAKAIA-SWGVDYIVLT--SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-FRGDLRAVETLVHSGL-DVFAH 212 (328)
Q Consensus 138 ~~~~~~~-~~G~~~i~l~--gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-~~~~~e~l~~L~~aG~-~~i~~ 212 (328)
+.++... +.|++.|.+. |+++ +-.+.+.+.+..+++.+.+. .++.+.+.+++ .--|.++++.-.++-- .+..+
T Consensus 79 ~~Ak~q~~~~GAd~Idl~~~s~dp-~~~d~~~~e~~~~Vk~V~ea-vd~PL~Id~s~n~~kD~evleaale~~~g~~pLI 156 (319)
T PRK04452 79 AWAKKCVEEYGADMITLHLISTDP-NGKDKSPEEAAKTVEEVLQA-VDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLL 156 (319)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCc-ccccchHHHHHHHHHHHHHh-CCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEE
Confidence 3344333 7889988664 4443 33344567788899988765 36666444332 1126777776665511 11111
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCC--CEEeeecccCCC
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDV--DILTLGQYLQPT 289 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~--~~i~i~~~l~PT 289 (328)
. ..+.+++.+....+++ .|..+ +++ -...+...++...+.++|+ +.+.+- |+
T Consensus 157 ------------n--Sat~en~~~i~~lA~~--y~~~V-----va~s~~Dln~ak~L~~~l~~~Gi~~edIviD----P~ 211 (319)
T PRK04452 157 ------------G--SAEEDNYKKIAAAAMA--YGHAV-----IAWSPLDINLAKQLNILLTELGVPRERIVMD----PT 211 (319)
T ss_pred ------------E--ECCHHHHHHHHHHHHH--hCCeE-----EEEcHHHHHHHHHHHHHHHHcCCCHHHEEEe----CC
Confidence 1 3455566667777777 66542 223 2346667777777888888 545442 42
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 290 PLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 290 p~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
...........-+.++.+|..|.+ |.+.
T Consensus 212 ~~~lg~g~e~~~~~~e~IR~aAl~-~d~~ 239 (319)
T PRK04452 212 TGALGYGIEYSYSVMERIRLAALK-GDEM 239 (319)
T ss_pred cccccCCHHHHHHHHHHHHHHHhc-CCCc
Confidence 111001111234557778888876 6553
No 361
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=84.39 E-value=14 Score=32.15 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=61.1
Q ss_pred eeeEEEEEeCCCCCCCCCCCccCCC-C--CCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH
Q 020304 101 IATATIMLLGDTCTRGCRFCAVKTS-R--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 101 ~~~~~~i~~t~gC~~~C~FC~~~~~-~--~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik 177 (328)
+-..+|+.+..+| .+.+. . .-....+++....+......|++.+++..+....+. . =.++++.++
T Consensus 105 ~ip~gYiv~~~~~-------~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~-v----~~e~i~~Vk 172 (205)
T TIGR01769 105 VIPMAYLIVGPGG-------AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYP-V----NPETISLVK 172 (205)
T ss_pred ccceEEEEECCCC-------ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCC-C----CHHHHHHHH
Confidence 3355666665555 23221 1 123345667777777777899999988654432221 1 156677777
Q ss_pred HhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 178 KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 178 ~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.. ++.+. ..+++.+.|.++.+.++|.|.+.++
T Consensus 173 ~~~-~~Pv~--vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 173 KAS-GIPLI--VGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred Hhh-CCCEE--EeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 663 44443 3455568999999999999987653
No 362
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=84.36 E-value=8.8 Score=35.81 Aligned_cols=133 Identities=24% Similarity=0.256 Sum_probs=78.9
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+..+.++.+.+.|++.+.+..... . .+...++++.+++..|++.+.+ +...+.+.++.+.++|+|.+.++.
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~----~~~~~~~i~~ik~~~p~v~Vi~---G~v~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--H----SVYVIEMIKFIKKKYPNVDVIA---GNVVTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--C----cHHHHHHHHHHHHHCCCceEEE---CCCCCHHHHHHHHhcCCCEEEECC
Confidence 345677888889999888754332 1 2678889999999877666543 233588999999999999987643
Q ss_pred hhHH-HHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVK-RLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~-~~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-... -..+...+ ..-++.-..++.+.+++ .++++ |. |=-.+..++.+.+ .+|++.+.+...+
T Consensus 165 g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~--~~vpV----IA~GGI~~~~di~kAl----a~GA~~VmiGt~f 229 (325)
T cd00381 165 GPGSICTTRIVTGVGVPQATAVADVAAAARD--YGVPV----IADGGIRTSGDIVKAL----AAGADAVMLGSLL 229 (325)
T ss_pred CCCcCcccceeCCCCCCHHHHHHHHHHHHhh--cCCcE----EecCCCCCHHHHHHHH----HcCCCEEEecchh
Confidence 1100 01111110 01244445555555555 56653 32 1123456655544 3888887775443
No 363
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.21 E-value=22 Score=32.05 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=72.7
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-ch
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~ 214 (328)
+.+-++.+++.|++.+.+ ++++ ++...++++.+++. ++....+.+... +++.++.+.+..-+.++. +.
T Consensus 106 ~e~f~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~--gl~~I~lvap~t-~~eri~~i~~~s~gfIY~vs~ 174 (258)
T PRK13111 106 VERFAADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKH--GLDLIFLVAPTT-TDERLKKIASHASGFVYYVSR 174 (258)
T ss_pred HHHHHHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHc--CCcEEEEeCCCC-CHHHHHHHHHhCCCcEEEEeC
Confidence 456678888999999888 3465 58888888888887 455444333322 578888888887665553 32
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
-...-.. ........+.++.+++. .+.+ +++|+|- |.+++.+.+. . +|-+.+.
T Consensus 175 ~GvTG~~------~~~~~~~~~~i~~vk~~-~~~p----v~vGfGI~~~e~v~~~~~----~-ADGviVG 228 (258)
T PRK13111 175 AGVTGAR------SADAADLAELVARLKAH-TDLP----VAVGFGISTPEQAAAIAA----V-ADGVIVG 228 (258)
T ss_pred CCCCCcc------cCCCccHHHHHHHHHhc-CCCc----EEEEcccCCHHHHHHHHH----h-CCEEEEc
Confidence 1110010 11223444566666651 2433 6889965 7788777553 3 5655554
No 364
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.17 E-value=24 Score=32.13 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+++.+.+.++.+.+.|++.|.+.....- ..+..+.++++.+++..|++.+.+. .|+.-+--.-.-.-.++|++.+
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~----~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGI----LSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCC----CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567788999999999999988532221 1258899999999988777655442 2332222222333357899988
Q ss_pred eech
Q 020304 211 AHNI 214 (328)
Q Consensus 211 ~~~~ 214 (328)
..++
T Consensus 221 d~s~ 224 (280)
T cd07945 221 HTTV 224 (280)
T ss_pred EEec
Confidence 6543
No 365
>PLN02591 tryptophan synthase
Probab=83.93 E-value=32 Score=30.87 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=74.9
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-ch
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~ 214 (328)
+.+-++.+++.|++.+.+ ++++ .+...++.+.++++ ++....+.+... +++.++.+.+..-..++. +.
T Consensus 95 ~~~F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~--gl~~I~lv~Ptt-~~~ri~~ia~~~~gFIY~Vs~ 163 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKN--GIELVLLTTPTT-PTERMKAIAEASEGFVYLVSS 163 (250)
T ss_pred HHHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCC-CHHHHHHHHHhCCCcEEEeeC
Confidence 355678888999998887 4566 58888888888887 555444443332 577888888775444442 32
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCC-HHHHHHHHHHHHhCCCCEEeeec
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt-~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
....-. + ....++..+.++.+++. .++ -+++|+|-+ .+++. .+.+.|+|-+-+.+
T Consensus 164 ~GvTG~-~-----~~~~~~~~~~i~~vk~~-~~~----Pv~vGFGI~~~e~v~----~~~~~GADGvIVGS 219 (250)
T PLN02591 164 TGVTGA-R-----ASVSGRVESLLQELKEV-TDK----PVAVGFGISKPEHAK----QIAGWGADGVIVGS 219 (250)
T ss_pred CCCcCC-C-----cCCchhHHHHHHHHHhc-CCC----ceEEeCCCCCHHHHH----HHHhcCCCEEEECH
Confidence 111000 0 11234455666666661 333 468899655 66654 46678888777654
No 366
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.88 E-value=7.8 Score=35.00 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-----cCC--------CH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-----LGE--------SD 262 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-----lgE--------t~ 262 (328)
++.++.++++|++.+-+........... ...+.++.-+.-+.+++ .|+.+.+....+ ++. ..
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~~~~~~l~~~l~~--~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~ 98 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSREQRLALVNALVE--TGFRVNSMCLSAHRRFPLGSEDDAVRAQAL 98 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhc---cCCCHHHHHHHHHHHHH--cCCceeEEecccccccCCCCCCHHHHHHHH
Confidence 5677777777777766644322211110 12233444444444456 676654321111 111 11
Q ss_pred HHHHHHHHHHHhCCCCEEee
Q 020304 263 DDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...++.++++|+..+.+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~ 118 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQL 118 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 22445556666777776654
No 367
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.79 E-value=24 Score=31.60 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=50.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
.+++.+.+.++++.+.|++.|.|...... ..++.+.++++.+++..+ +.+.+. .++.-+. ...+..+ ++|++
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~----~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi-~aG~~ 209 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGI----LDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAV-RAGAT 209 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 35677888999999999999988532221 125899999999998765 444332 2332222 3444444 78999
Q ss_pred EEeec
Q 020304 209 VFAHN 213 (328)
Q Consensus 209 ~i~~~ 213 (328)
.+-.+
T Consensus 210 ~vd~s 214 (259)
T cd07939 210 HVSVT 214 (259)
T ss_pred EEEEe
Confidence 87653
No 368
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.69 E-value=7.4 Score=31.66 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.++++.+..+.-|.+++-... + .+.+.++++.+++...+- +... -++.+.++.++.|++.|++++..
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~-h----~~l~~~lve~lre~G~~~-i~v~-~GGvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGG-H----LTLVPGLVEALREAGVED-ILVV-VGGVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccch-H----HHHHHHHHHHHHHhCCcc-eEEe-ecCccCchhHHHHHHhCcceeeC
Confidence 34455557777777777653321 2 378888899999885432 2122 34445778899999999999875
No 369
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=83.67 E-value=20 Score=33.36 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=61.5
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EE
Q 020304 173 VKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TK 251 (328)
Q Consensus 173 i~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~ 251 (328)
++.+++. +-.+.+.|. -|--..+.+-++|+|.+.++.....-..-.-.....+.++.+...+.+++- .... +.
T Consensus 27 l~~~k~~--g~kivmlTA---yD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rg-a~~a~vV 100 (332)
T PLN02424 27 LRQKYRR--GEPITMVTA---YDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARG-ANRPLLV 100 (332)
T ss_pred HHHHHhC--CCcEEEEec---CCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhcc-CCCCEEE
Confidence 3445544 334544443 377888889999999999876554332110001245778777777766541 2222 44
Q ss_pred EeEEEE-cCCCHHHHHHHHHHH-HhCCCCEEee
Q 020304 252 SSIMLG-LGESDDDLKEAMADL-RSIDVDILTL 282 (328)
Q Consensus 252 ~~~ivG-lgEt~e~~~~~l~~l-~~l~~~~i~i 282 (328)
+++-+| ++++.++..+....+ ++.|++.+.+
T Consensus 101 aDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKl 133 (332)
T PLN02424 101 GDLPFGSYESSTDQAVESAVRMLKEGGMDAVKL 133 (332)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 477777 367777766666555 6677666554
No 370
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=83.64 E-value=35 Score=31.20 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+...++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+.. .+.+. +.-|.-.+.|.+..-.++|++++-+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~--g~~~~~~~~~~~A~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftSVM~ 103 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYA--GIEYISAMVRTAAEKA-SVPVA-LHLDHGTDFEQVMKCIRNGFTSVMI 103 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhC--CHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeEEE
Confidence 355566777777777554433332211222 3577888888777653 56663 3445555778888888999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CC----C----HHHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GE----S----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gE----t----~e~~~~~l~~l~~l~~~~i~ 281 (328)
+-..++ +. .+.+...++++.++. .|+.|-+-+ +=|- +. + ..+..+..+|+++.|+|.+.
T Consensus 104 DgS~lp-~e-------eNi~~T~~vv~~Ah~--~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LA 173 (284)
T PRK12857 104 DGSKLP-LE-------ENIALTKKVVEIAHA--VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALA 173 (284)
T ss_pred eCCCCC-HH-------HHHHHHHHHHHHHHH--cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEe
Confidence 543322 11 134556678888888 888765443 3232 11 1 12567888999999999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 174 v 174 (284)
T PRK12857 174 I 174 (284)
T ss_pred e
Confidence 7
No 371
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.59 E-value=19 Score=31.99 Aligned_cols=78 Identities=23% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
.+++++.+.++.+.+.|++.+.+........ ++.+.++++.+++..+++.+.+. .++.-+- ...+..+ ++|++
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~-~aG~~ 217 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLAT----PEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAAL-EAGAD 217 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHH-HcCCC
Confidence 3567788899999999999998853222112 58999999999998775555442 2332222 3444444 78999
Q ss_pred EEeec
Q 020304 209 VFAHN 213 (328)
Q Consensus 209 ~i~~~ 213 (328)
.+-.+
T Consensus 218 ~id~s 222 (265)
T cd03174 218 RVDGS 222 (265)
T ss_pred EEEec
Confidence 88653
No 372
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=83.18 E-value=32 Score=30.43 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
-++++.+......|+..|.+-= .+.--.. .+++..+-+.++. .+.+++. .++|+++...+...+.+.+
T Consensus 21 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~---d~Dv~~l~~~~~~---~lNlE~a-----~~~emi~ia~~vkP~~vtL 89 (237)
T TIGR00559 21 PDPLRAALIAEQAGADGITVHLREDRRHIQ---DRDVYDLKEALTT---PFNIEMA-----PTEEMIRIAEEIKPEQVTL 89 (237)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCC---HHHHHHHHHHcCC---CEEeccC-----CCHHHHHHHHHcCCCEEEE
Confidence 3467777778888999887731 1110111 1444443333321 3455542 2789999999999999998
Q ss_pred chhhHHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 213 NIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 213 ~~et~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
-+|.-.++. ...-+-....+...++++.+++ .|+.|+.. + +.. .+.++..+++|++.|-++
T Consensus 90 VPEkr~ElTTegGldv~~~~~~l~~~i~~l~~--~gI~VSLF--i---DP~---~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 90 VPEARDEVTTEGGLDVARLKDKLCELVKRFHA--AGIEVSLF--I---DAD---KDQISAAAEVGADRIEIH 151 (237)
T ss_pred CCCCCCCccCCcCchhhhCHHHHHHHHHHHHH--CCCEEEEE--e---CCC---HHHHHHHHHhCcCEEEEe
Confidence 666544432 1000012356778889999999 99987643 2 222 356788899999998884
No 373
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.98 E-value=8.2 Score=38.32 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~-~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+..+.++.+.+.|++.+.+...+. . .+...+.++++++.+|+ +.+.+ +...+.+.++.|.++|.|.+.+
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g--~----~~~~~~~i~~ir~~~~~~~~V~a---GnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEG--Y----SEWQKRTLDWIREKYGDSVKVGA---GNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCccc--c----cHHHHHHHHHHHHhCCCCceEEe---ccccCHHHHHHHHHcCCCEEEE
Confidence 4556788889999999888862221 2 26778999999998774 55543 3346899999999999999987
Q ss_pred chhhH
Q 020304 213 NIETV 217 (328)
Q Consensus 213 ~~et~ 217 (328)
++-..
T Consensus 312 g~g~G 316 (502)
T PRK07107 312 GIGGG 316 (502)
T ss_pred CCCCC
Confidence 65444
No 374
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=82.90 E-value=16 Score=32.34 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc-CCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a-G~~~i 210 (328)
+..+..+.++.+.+.|++.+.+++.+...... .+-.++++.+++.. ++.+. .+++..+.+.+..+.+. |++.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~---g~~~~~i~~i~~~~-~~pvi--a~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKK---GYDLELIRAVSSAV-NIPVI--ASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCC---CCCHHHHHHHHhhC-CCCEE--EeCCCCCHHHHHHHHHhCCCCEE
Confidence 34556788889999999999997644311111 22356677776652 45553 45666677777777776 89998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHH
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVL 238 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i 238 (328)
.++ ..++. ...++++.++.+
T Consensus 221 ~vg----~al~~----~~~~~~~~~~~~ 240 (243)
T cd04731 221 LAA----SIFHF----GEYTIAELKEYL 240 (243)
T ss_pred EEe----HHHHc----CCCCHHHHHHHH
Confidence 875 23443 245566554444
No 375
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=82.83 E-value=28 Score=32.20 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEE--EeccCCCC-----CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVL--TSVDRDDI-----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l--~gg~~~~l-----~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
+++++.+.++++.+.|+..|.+ +|+..... ..-..+.+.++++..++. ++.+.+-.. ....++.+.+
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~----~~~~i~~~l~ 191 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAY----GAEAIRRAIR 191 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeC----CHHHHHHHHH
Confidence 4567788888888889997744 33211000 011257888888888886 444433222 2344555556
Q ss_pred cCCcEEeec
Q 020304 205 SGLDVFAHN 213 (328)
Q Consensus 205 aG~~~i~~~ 213 (328)
+|++.+.|.
T Consensus 192 ~G~~~i~H~ 200 (342)
T cd01299 192 AGVDTIEHG 200 (342)
T ss_pred cCCCEEeec
Confidence 677666653
No 376
>PLN02417 dihydrodipicolinate synthase
Probab=82.83 E-value=21 Score=32.53 Aligned_cols=18 Identities=6% Similarity=0.143 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHhCCCCe
Q 020304 230 GYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~ 249 (328)
+.++.++..+.+.+ .|..
T Consensus 81 ~t~~~i~~a~~a~~--~Gad 98 (280)
T PLN02417 81 STREAIHATEQGFA--VGMH 98 (280)
T ss_pred cHHHHHHHHHHHHH--cCCC
Confidence 44455555555555 4443
No 377
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=82.82 E-value=24 Score=31.83 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEE-eCC-CCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECL-TSD-FRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~-t~~-~~~~~e~l~~L~~aG 206 (328)
.+++.+.+.++++.+.|+..|.|..... ...++.+.++++.+++..++ +.+.+- +++ ++.....+..+ ++|
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G----~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi-~aG 214 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVG----YLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAV-EAG 214 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCC----CCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHH-HhC
Confidence 3566678899999999999998853222 11258999999999998775 555432 232 22123444444 689
Q ss_pred CcEEeec
Q 020304 207 LDVFAHN 213 (328)
Q Consensus 207 ~~~i~~~ 213 (328)
++.+-.+
T Consensus 215 ~~~iD~s 221 (268)
T cd07940 215 ARQVECT 221 (268)
T ss_pred CCEEEEE
Confidence 9987653
No 378
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=82.78 E-value=10 Score=34.17 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE-----EEcCC--------CH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM-----LGLGE--------SD 262 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i-----vGlgE--------t~ 262 (328)
.+.++.++++|++.+-+.+...+..... ...+.++..+.-+.+.+ .|+.+++--+ +.++. ..
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~ 93 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSREQRLALVNAIIE--TGVRIPSMCLSAHRRFPLGSKDKAVRQQGL 93 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhc---cCCCHHHHHHHHHHHHH--cCCCceeeecCCCccCcCCCcCHHHHHHHH
Confidence 6777777888887776644322111010 12344555555556666 7777542211 11221 12
Q ss_pred HHHHHHHHHHHhCCCCEEee
Q 020304 263 DDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.+.++.++++|+..+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEe
Confidence 23556667777777777655
No 379
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=82.69 E-value=33 Score=30.09 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
...+.++++++.+.|++.+++---+....++ ...=..+++.+++.. --+.++..... .+..++.+.++|.+.++
T Consensus 15 ~~~l~~el~~~~~agad~iH~DVMDghFVPN--iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~It 89 (220)
T COG0036 15 FARLGEELKALEAAGADLIHIDVMDGHFVPN--ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADIIT 89 (220)
T ss_pred HhHHHHHHHHHHHcCCCEEEEeccCCCcCCC--cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCEEE
Confidence 3455788889999999988774222111221 122234566666542 12444443321 36899999999999999
Q ss_pred echh
Q 020304 212 HNIE 215 (328)
Q Consensus 212 ~~~e 215 (328)
+..|
T Consensus 90 ~H~E 93 (220)
T COG0036 90 FHAE 93 (220)
T ss_pred EEec
Confidence 9877
No 380
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.57 E-value=25 Score=32.94 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEE--EEEeCCCCCCHHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMV--ECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i--~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
+++++.+.++.+.+.|+..|.+.....-.+ ++.+.++++.+++..+ ++.+ ++-.+.++..-..+.. .++|++
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~----P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~aGa~ 215 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAGAML----PDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAA-IEAGAT 215 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCCCCC----HHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHH-HHhCCC
Confidence 457788999999999999998864332222 5899999999998753 4444 4322222212333444 479999
Q ss_pred EEee
Q 020304 209 VFAH 212 (328)
Q Consensus 209 ~i~~ 212 (328)
++-.
T Consensus 216 ~iD~ 219 (333)
T TIGR03217 216 RIDA 219 (333)
T ss_pred EEEe
Confidence 8754
No 381
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.48 E-value=37 Score=30.56 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..++.+.++.+.+.|+.-+.+.... .+..+.. +.++.+++. .++.+. ..++..++.+++..+++|.|.+.+
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~--~~f~g~~----~~l~~v~~~-v~iPvl--~kdfi~~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDE--RFFQGSL----EYLRAARAA-VSLPVL--RKDFIIDPYQIYEARAAGADAILL 139 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeccc--ccCCCCH----HHHHHHHHh-cCCCEE--eeeecCCHHHHHHHHHcCCCEEEE
Confidence 4567889999999999887654322 2333333 445555654 245553 366777888999999999999987
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.... .+.++..+.++.+++ .|+.+-+. -.|.+|+ ..+.++|++.+.+++
T Consensus 140 i~~~------------l~~~~l~~li~~a~~--lGl~~lve-----vh~~~E~----~~A~~~gadiIgin~ 188 (260)
T PRK00278 140 IVAA------------LDDEQLKELLDYAHS--LGLDVLVE-----VHDEEEL----ERALKLGAPLIGINN 188 (260)
T ss_pred Eecc------------CCHHHHHHHHHHHHH--cCCeEEEE-----eCCHHHH----HHHHHcCCCEEEECC
Confidence 4322 123455666666777 67653222 1244444 234466777777643
No 382
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=82.41 E-value=40 Score=30.96 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.+...++.+.+.+..-|.-.+...-.+. ++.+.+..+++.+.+.. ..+.+. +.-|.- +.+.+.+..++|++.+.
T Consensus 28 ~e~~~avi~aAe~~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~vPV~-lHLDH~-~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 28 LEWTQAILRAAEAKKAPVLIQTSMGAAKYM-GGYKVCKNLIENLVESMGITVPVA-IHLDHG-HYEDALECIEVGYTSIM 104 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCcEE-EECCCC-CHHHHHHHHHcCCCEEE
Confidence 345566777777766654433322211221 12577788888776653 134553 455665 77888888899999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE--EeEEEEc-----CCCH-HHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK--SSIMLGL-----GESD-DDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~--~~~ivGl-----gEt~-e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+....++. ..+.+...+.++.+++ .|+.+. .+-+.|- |.+. .+..+..++. +.|+|.+.+.
T Consensus 105 ~d~S~l~~--------eEni~~t~~v~~~a~~--~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD~LAv~ 173 (293)
T PRK07315 105 FDGSHLPV--------EENLKLAKEVVEKAHA--KGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGIDFLAAG 173 (293)
T ss_pred EcCCCCCH--------HHHHHHHHHHHHHHHH--cCCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCCEEeec
Confidence 84322110 0122344456666677 666543 3334441 2222 3455556666 6899998874
Q ss_pred --cc--cCCCCCCcccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 284 --QY--LQPTPLHLTVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 284 --~~--l~PTp~~~~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+. +.||+ .+ .-.++.|+++.... ++..|..|
T Consensus 174 iG~vHG~y~t~-----~k---~l~~e~L~~i~~~~~~iPlVlhG 209 (293)
T PRK07315 174 IGNIHGPYPEN-----WE---GLDLDHLEKLTEAVPGFPIVLHG 209 (293)
T ss_pred cccccccCCCC-----CC---cCCHHHHHHHHHhccCCCEEEEC
Confidence 22 01221 01 23355666666666 46666665
No 383
>PRK14847 hypothetical protein; Provisional
Probab=82.30 E-value=44 Score=31.32 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=74.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEeCCCCCC-HHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~---~~~~i~~~t~~~~~~-~e~l~~L~~aG 206 (328)
.++++-.++++.+.+.|++.|-.. . |..+ +.=.+.++.|.+.. .+..+..++..-..| +..++.+++++
T Consensus 51 fs~eeKl~IA~~L~~lGVd~IEvG--~-Pa~s----~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~ 123 (333)
T PRK14847 51 MDGARKLRLFEQLVAVGLKEIEVA--F-PSAS----QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSP 123 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEee--C-CCCC----HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCC
Confidence 566777899999999999988763 3 3344 22345666665542 135565555431111 23455555555
Q ss_pred CcEEeechhhHHHH-HhhhcCCCCCHHH----HHHHHHHHHHhCCCCeE---EEeEEEEc-C--CCH-HHHHHHHHHHHh
Q 020304 207 LDVFAHNIETVKRL-QRIVRDPRAGYEQ----SLEVLKHAKLSKKGLIT---KSSIMLGL-G--ESD-DDLKEAMADLRS 274 (328)
Q Consensus 207 ~~~i~~~~et~~~~-~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v---~~~~ivGl-g--Et~-e~~~~~l~~l~~ 274 (328)
..++.+.+-+.+-. .... +.+.++ ..++++.+++ .|... ...+-+|. . -|+ +-+.+.++.+.+
T Consensus 124 ~~~Vhi~~p~Sd~h~~~kl---~~s~~~vl~~~~~~v~~Ak~--~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 124 RAIVHLYNPIAPQWRRIVF---GMSRAEIKEIALAGTRQIRA--LADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CCEEEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--hccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 66788877666553 2222 234554 4467777888 65421 12356666 2 233 334445554433
Q ss_pred C-CCCE
Q 020304 275 I-DVDI 279 (328)
Q Consensus 275 l-~~~~ 279 (328)
. |++.
T Consensus 199 ~~ga~r 204 (333)
T PRK14847 199 IWGPTP 204 (333)
T ss_pred HhCCCc
Confidence 3 5443
No 384
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=82.27 E-value=8.7 Score=37.46 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=73.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCC------CcHHHHHHHHHHHHHhCCC-cEEE--EEeCCCC--------CC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPD-IMVE--CLTSDFR--------GD 195 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~l~~li~~ik~~~~~-~~i~--~~t~~~~--------~~ 195 (328)
.+.|...++.+.+.|++.|.-.-|++|.=.| +++++..++++.|++.+.+ +.+. .+.-+.. .|
T Consensus 91 ~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~~~D 170 (590)
T KOG0564|consen 91 KEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDYLAD 170 (590)
T ss_pred HHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccchhhh
Confidence 3456677888899999998777677542211 3578999999999998633 2222 1211111 12
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMA 270 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~ 270 (328)
-+.+++=.+||.|.+. ..+ -++.|.+++-++.+++ .|+ +.-++.|+ -++...+....+
T Consensus 171 l~yLk~KvdaGaDFIi------TQl-------FYd~e~flkfv~~cR~--~gi--~~PIvPGIMPI~~Y~sf~R~~k 230 (590)
T KOG0564|consen 171 LPYLKEKVDAGADFII------TQL-------FYDVETFLKFVKDCRA--AGI--NVPIVPGIMPIQSYRSFLRIAK 230 (590)
T ss_pred hHHHHHhhcccchhhh------hhh-------hcCHHHHHHHHHHHHH--hCC--CCCcccccccchhHHHHHHHHH
Confidence 3344444456655432 111 2467888888888888 887 34566676 677766655443
No 385
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=82.12 E-value=46 Score=31.38 Aligned_cols=178 Identities=14% Similarity=0.084 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+..+++.+.+.+..-|.-.+...-.+. +.+.+..+++.+.+..+.+.+. +.-+.-.+.+.+..-.++|++++-+
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~--g~~~~~~~~~~~ae~~~~VPVa-lHLDHg~~~e~i~~Ai~~GFtSVMi 102 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYA--GAPFLRHLILAAIEEYPHIPVV-MHQDHGNSPATCQRAIQLGFTSVMM 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhC--CHHHHHHHHHHHHHhCCCCcEE-EECCCCCCHHHHHHHHHcCCCEEee
Confidence 455567777777777665544332211222 3578888898888765446664 4445555888899999999999988
Q ss_pred chhhHHHHHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcC-------CC------------HHHHHHHHH
Q 020304 213 NIETVKRLQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLG-------ES------------DDDLKEAMA 270 (328)
Q Consensus 213 ~~et~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlg-------Et------------~e~~~~~l~ 270 (328)
+-..++. .... +-..+.+...++++.++. .|+.|-+-+ +-|.. +. ..+-.+..+
T Consensus 103 DgS~l~~--~~~~~p~eENI~~Tkevve~Ah~--~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~ 178 (347)
T TIGR01521 103 DGSLRED--AKTPADYDYNVRVTAEVVAFAHA--VGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAAD 178 (347)
T ss_pred cCcCCcc--cCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHH
Confidence 5443321 0000 001134456677888888 888765443 32221 11 113467889
Q ss_pred HHHhCCCCEEeeecccCCCCCCcccC----CCCCHHHHHHHHHHHHhc-CCceeee
Q 020304 271 DLRSIDVDILTLGQYLQPTPLHLTVK----EYVTPEKFDFWKAYGESI-GFRYVAS 321 (328)
Q Consensus 271 ~l~~l~~~~i~i~~~l~PTp~~~~~~----~~~~~~~~~~l~~~~~~~-G~~~~~~ 321 (328)
|+++.|+|.+.+. + .|--.. .. +....-.++.++++.... ++..|-=
T Consensus 179 Fv~~TgvD~LAva-i--Gt~HG~-Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLH 230 (347)
T TIGR01521 179 FVKKTKVDALAVA-I--GTSHGA-YKFTRKPTGEVLAIQRIEEIHARLPDTHLVMH 230 (347)
T ss_pred HHHHHCcCEEehh-c--ccccCC-cCCCCCCChhhcCHHHHHHHHccCCCCCEEEe
Confidence 9999999987762 3 221111 11 110124577888888777 4665543
No 386
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=81.99 E-value=17 Score=32.44 Aligned_cols=41 Identities=15% Similarity=-0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEe
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFA 211 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~ 211 (328)
+.+.++.+++..-+ .|+...+.. .+ +++.+.+.+.|+....
T Consensus 17 l~~~l~~~a~~Gf~-~VEl~~~~~-~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFR-GVEFMFPYD-YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCC-EEEEcCCCC-CCHHHHHHHHHHcCCcEEE
Confidence 45556666655211 233222222 23 4555556666666443
No 387
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.98 E-value=9.1 Score=34.67 Aligned_cols=66 Identities=23% Similarity=0.406 Sum_probs=52.1
Q ss_pred EeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC-C-CCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 252 SSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP-T-PLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 252 ~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-T-p~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
..+|.|. -|+.+.+.+.++.++++|...+..+.| .| | |.. ...+..+.+..+++++.++|+.+.+.
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~-kpRTs~~s---~~G~g~~gl~~l~~~~~~~Gl~~~te 97 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAF-KPRTSPYS---FQGLGEEGLKILKEVGDKYNLPVVTE 97 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeee-cCCCCCCc---cCCcHHHHHHHHHHHHHHcCCCEEEe
Confidence 3478899 899999999999999999998777533 46 4 343 23334778999999999999998765
No 388
>PLN02334 ribulose-phosphate 3-epimerase
Probab=81.81 E-value=16 Score=32.10 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=48.5
Q ss_pred chHHHHHHHHHCC-CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
...+.++.+...| +.++.+.+..++.-.........+.++.+++..++..+.+ .+++ +++.+..+.++|.+.+.++
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a--~GGI-~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV--DGGV-GPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE--eCCC-CHHHHHHHHHcCCCEEEEC
Confidence 3455566665654 8888776555432221112455566777777655555543 3443 8999999999999999876
No 389
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=81.65 E-value=32 Score=29.35 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++..+.++.+.+.|++.+.+. ..+.....+.+.++.+++......+.+..+ +.++.+.++|++.+.+.
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLR------EKGLDTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLG 88 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEe------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecC
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH 292 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~ 292 (328)
.+... ...++..+. .|. ++|. -.|.++..+.. +.|+|.+.+.++. ||...
T Consensus 89 ~~~~~----------------~~~~~~~~~--~~~------~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~-~~~~~ 139 (212)
T PRK00043 89 QDDLP----------------VADARALLG--PDA------IIGLSTHTLEEAAAAL----AAGADYVGVGPIF-PTPTK 139 (212)
T ss_pred cccCC----------------HHHHHHHcC--CCC------EEEEeCCCHHHHHHHh----HcCCCEEEECCcc-CCCCC
Q ss_pred cccCCCCCHHHHHHHHHHHHhcC-Cceeeec
Q 020304 293 LTVKEYVTPEKFDFWKAYGESIG-FRYVASG 322 (328)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~G-~~~~~~g 322 (328)
.....+..++.++++..... +..++.|
T Consensus 140 ---~~~~~~~g~~~~~~~~~~~~~~~v~a~G 167 (212)
T PRK00043 140 ---KDAKAPQGLEGLREIRAAVGDIPIVAIG 167 (212)
T ss_pred ---CCCCCCCCHHHHHHHHHhcCCCCEEEEC
No 390
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=81.49 E-value=32 Score=29.92 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et 216 (328)
.+.+..+.+.|..++...-|..++....+.+.+.++.+.+++......+ +.++.. +...+-....+|++.+.++.+.
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tki--l~As~r-~~~ei~~a~~~Gad~vTv~~~v 188 (211)
T cd00956 112 AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKI--LAASIR-NPQHVIEAALAGADAITLPPDV 188 (211)
T ss_pred HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceE--EecccC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 3455666778888775543443334444567788888877776323333 344443 7777777889999999999999
Q ss_pred HHHHHh
Q 020304 217 VKRLQR 222 (328)
Q Consensus 217 ~~~~~~ 222 (328)
++++..
T Consensus 189 l~~l~~ 194 (211)
T cd00956 189 LEQLLK 194 (211)
T ss_pred HHHHhc
Confidence 888764
No 391
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=81.43 E-value=7.6 Score=34.13 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHH-HHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET-LVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~-L~~aG~~~i~ 211 (328)
..+..+.++.+.+.|+..+.+++-....... ..-.++++.+++.. ++.+. ..++..+.+.+.. +++.|++.+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~---g~~~~~~~~i~~~~-~ipvi--a~GGi~s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTMK---GYDLELIKTVSDAV-SIPVI--ALGGAGSLDDLVEVALEAGASAVA 225 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCcC---CCCHHHHHHHHhhC-CCCEE--EECCCCCHHHHHHHHHHcCCCEEE
Confidence 4456788899999999999998744321111 12366777777663 45553 3455557777666 9999999988
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
++
T Consensus 226 vg 227 (232)
T TIGR03572 226 AA 227 (232)
T ss_pred Ee
Confidence 74
No 392
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=81.38 E-value=23 Score=32.92 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=49.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH-cCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~-aG~~~i~~~ 213 (328)
+..+.++.+.+.|+..+.+.|.+......+.. -.++++.+++.. ++.+ ..++.+.+.+.++.+.+ .|+|.+.++
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a--~~~~i~~ik~~~-~iPV--I~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEA--EYDSIRAVKQKV-SIPV--IANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCc--ChHHHHHHHHhc-CCcE--EEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 45677888889999999888765322211111 236778888763 4555 44666668777666665 689999874
No 393
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=81.30 E-value=9.3 Score=35.00 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
.+++.+.+.++.+.+.|++.|.|...... . .+..+.++++.+++..+++.+.+- .++.-+. ...+.. .++|++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~aG~~ 226 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGV-G---TPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYAS-LEEGIT 226 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCc-c---CHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHH-HHhCCC
Confidence 34667789999999999999988532221 1 258999999999988765444432 2332222 344444 488999
Q ss_pred EEeechhh
Q 020304 209 VFAHNIET 216 (328)
Q Consensus 209 ~i~~~~et 216 (328)
.+..++..
T Consensus 227 ~id~s~~G 234 (287)
T PRK05692 227 VFDASVGG 234 (287)
T ss_pred EEEEEccc
Confidence 98765543
No 394
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=81.27 E-value=23 Score=33.50 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCC---CCC-HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDF---RGD-LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~---~~~-~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
+.+.++.+++..|+..+.++.... ..+ ++..+.+..++.+.+.+++....+....- ...+++.+++.++.+++.
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~--g~~~f~~~le~i~~i~~~ 184 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPE--GDRDFRGWLDNIAEIVSA 184 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCC--CcccHHHHHHHHHHHHHh
Confidence 778888888887776554322211 123 44555666667787777764433321110 123688888999988872
Q ss_pred CCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 245 ~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.+++|..-. +|.|-| .+.+..+.+.|++.+.++.
T Consensus 185 -~~vPVivK~-~g~g~s----~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 185 -LPVPVIVKE-VGFGIS----KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -hCCCEEEEe-CCCCCc----HHHHHHHHHcCCCEEEECC
Confidence 266654332 355666 3566778889999988843
No 395
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=81.23 E-value=11 Score=34.97 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~ 273 (328)
+.++.+.+.|++.|-+|.---.+ ..+...+ --.+++...+.++.+++. .++++++-+=+|..++.++..+.++.+.
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR~g~~~~~~~~~~~~~~l~ 148 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIRLGWDDSPEETIEFARILE 148 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEecccccccchhHHHHHHHHhh
Confidence 44555666688888776543211 1111000 013678888888888753 5688888888898878899999999999
Q ss_pred hCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 274 SIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 274 ~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
+.|++.+.++.. |+.. .+-.+..++.++++...+.+..+.-|-
T Consensus 149 ~~G~~~i~vH~R---t~~q----~~~~~a~w~~i~~i~~~~~ipvi~NGd 191 (309)
T PF01207_consen 149 DAGVSAITVHGR---TRKQ----RYKGPADWEAIAEIKEALPIPVIANGD 191 (309)
T ss_dssp HTT--EEEEECS----TTC----CCTS---HHHHHHCHHC-TSEEEEESS
T ss_pred hcccceEEEecC---chhh----cCCcccchHHHHHHhhcccceeEEcCc
Confidence 999999999633 4432 111255577777888877777777664
No 396
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.03 E-value=8.9 Score=33.72 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
.+++++.+.++.+.+.|+..|.|.....- + .+..+.++++.+++..|++.+.+. .++.-+- ...+.. .++|++
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~-~---~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA-~~aGa~ 208 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGI-M---TPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAA-LEAGAD 208 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS--S----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHH-HHTT-S
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCC-c---CHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHH-HHcCCC
Confidence 34677888999999999999988643321 2 268999999999998876555442 2332222 334444 468999
Q ss_pred EEeech
Q 020304 209 VFAHNI 214 (328)
Q Consensus 209 ~i~~~~ 214 (328)
.+-.++
T Consensus 209 ~id~t~ 214 (237)
T PF00682_consen 209 RIDGTL 214 (237)
T ss_dssp EEEEBG
T ss_pred EEEccC
Confidence 987654
No 397
>PRK08999 hypothetical protein; Provisional
Probab=80.99 E-value=32 Score=31.60 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=38.8
Q ss_pred eEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 253 SIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 253 ~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+.++|. ..|.+++. .+.+.|+|.+.++++. ||+.. +..++.-++.+++++.......++.|
T Consensus 226 ~~~ig~S~h~~~~~~----~a~~~~~dyi~~gpvf-~t~tk----~~~~~~g~~~~~~~~~~~~~Pv~AiG 287 (312)
T PRK08999 226 GRWVAASCHDAEELA----RAQRLGVDFAVLSPVQ-PTASH----PGAAPLGWEGFAALIAGVPLPVYALG 287 (312)
T ss_pred CCEEEEecCCHHHHH----HHHhcCCCEEEECCCc-CCCCC----CCCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 357888 78888753 3456899999998765 55432 11122234555666666678888876
No 398
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.90 E-value=8.3 Score=35.05 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+++.+.+.++.+.+.|++.|.+...... . .+..+.++++.+++..|++.+.+- .++.-+-....-.-.++|++.+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~i 222 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGV-A---TPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRF 222 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCc-c---CHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 4566788999999999999988532221 1 258999999999998876655442 2332223333334458899988
Q ss_pred eech
Q 020304 211 AHNI 214 (328)
Q Consensus 211 ~~~~ 214 (328)
-.++
T Consensus 223 d~t~ 226 (274)
T cd07938 223 DSSV 226 (274)
T ss_pred EEec
Confidence 7544
No 399
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.85 E-value=43 Score=30.25 Aligned_cols=123 Identities=13% Similarity=0.203 Sum_probs=74.2
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-ch
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~ 214 (328)
+.+-++.+.+.|++.+.+ ++++ .+...++++.+++. ++....+.+... +++.++.+.+..=..++. +.
T Consensus 108 ~e~F~~~~~~aGvdgvii-----pDLP---~ee~~~~~~~~~~~--gi~~I~lv~PtT-~~eri~~i~~~a~gFIY~vS~ 176 (263)
T CHL00200 108 INKFIKKISQAGVKGLII-----PDLP---YEESDYLISVCNLY--NIELILLIAPTS-SKSRIQKIARAAPGCIYLVST 176 (263)
T ss_pred HHHHHHHHHHcCCeEEEe-----cCCC---HHHHHHHHHHHHHc--CCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEcC
Confidence 456678889999998887 4565 47788888888887 454433333332 578888877775334433 31
Q ss_pred hhHHHHHhhhcCC-CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCC-HHHHHHHHHHHHhCCCCEEeeecc
Q 020304 215 ETVKRLQRIVRDP-RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 215 et~~~~~~~~~~~-~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt-~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
.. +++. ..-.++..+.++.+++ ..+ .-+.+|+|=+ .|++ +.+.+.|+|-+-+.+.
T Consensus 177 ~G-------vTG~~~~~~~~~~~~i~~ir~-~t~----~Pi~vGFGI~~~e~~----~~~~~~GADGvVVGSa 233 (263)
T CHL00200 177 TG-------VTGLKTELDKKLKKLIETIKK-MTN----KPIILGFGISTSEQI----KQIKGWNINGIVIGSA 233 (263)
T ss_pred CC-------CCCCCccccHHHHHHHHHHHH-hcC----CCEEEECCcCCHHHH----HHHHhcCCCEEEECHH
Confidence 11 1100 1123455666666665 123 3367899655 6654 4477888887777543
No 400
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.75 E-value=34 Score=29.07 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++--+. ...++++.+++..+.+.+...+ .++.+.++...++|.+.+.
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gt---vl~~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGT---ILTLEDLEEAIAAGAQFCF 89 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEE---EEcHHHHHHHHHcCCCEEE
Confidence 456778899999999999888863221 1234555666555544343222 2356899999999999875
Q ss_pred e
Q 020304 212 H 212 (328)
Q Consensus 212 ~ 212 (328)
.
T Consensus 90 ~ 90 (187)
T PRK07455 90 T 90 (187)
T ss_pred C
Confidence 3
No 401
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.73 E-value=11 Score=33.76 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=52.3
Q ss_pred eEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 253 SIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 253 ~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
.+|.|. -|++|.+.++.+.++++|+..+.=..|= | |..+ ....+..+.+..|++.+++.|+.+++.
T Consensus 17 ~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~k-pRts~~--sf~G~G~~gl~~L~~~~~~~Gl~~~Te 85 (250)
T PRK13397 17 NFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYK-PRTSAA--SFQGLGLQGIRYLHEVCQEFGLLSVSE 85 (250)
T ss_pred cEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccC-CCCCCc--ccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 467799 8999999999999999999877665453 6 4333 234555678999999999999998875
No 402
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.66 E-value=17 Score=35.93 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=82.4
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
..+.++.+.+.|++-+++.+.+. ....+.+.++.+++.+|++.+.+ +...+.+.+..|.++|++.+.++.-
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g------~~~~vl~~i~~i~~~~p~~~vi~---g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHG------HSEGVLDRVREIKAKYPDVQIIA---GNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCC------cchhHHHHHHHHHhhCCCCCEEE---eccCCHHHHHHHHHcCCCEEEECCC
Confidence 36788899999999766643322 13678889999999877777644 3345899999999999999976432
Q ss_pred hHH-HHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEE--EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 216 TVK-RLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 216 t~~-~~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
... -..+.+.+-+ -+++-..++.+.+++ .|+. +|. | -.|..|+.+.+ .+|++.+.+...+
T Consensus 300 ~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~----viadGG-i~~~~di~kAl----a~GA~~v~~G~~~ 363 (486)
T PRK05567 300 PGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIP----VIADGG-IRYSGDIAKAL----AAGASAVMLGSML 363 (486)
T ss_pred CCccccceeecCCCcCHHHHHHHHHHHhcc--CCCe----EEEcCC-CCCHHHHHHHH----HhCCCEEEECccc
Confidence 111 0111111111 234455555555555 5654 444 3 35666665544 3799988887666
No 403
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=80.62 E-value=50 Score=34.66 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=81.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+.++.+.+.|++-|.+-- ..+. .+.+.++++.+++.. .++.+ +.|+ ..+...++|.+ +.+
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR~---K~~~---~~~~~~~a~~l~~l~~~~~~~l--iind------~~~la~~~~~d-VHl 84 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLRD---KNAG---VEDVRAAAKELKELCDARGVAL--VVND------RLDVAVELGLH-VHI 84 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEeC---CCCC---HHHHHHHHHHHHHHHHHhCCeE--EEeC------hHHHHHHcCCC-eec
Confidence 456777888888988777752 1233 355666666665432 14444 3343 24455577888 666
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC---CCCEEeeecccCC
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI---DVDILTLGQYLQP 288 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l---~~~~i~i~~~l~P 288 (328)
+.+.++ . +..+.. .| -+.++|. ..|.+++.........+ |+|.+.++++. |
T Consensus 85 g~~dl~------------~----~~~r~~----~~----~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf-~ 139 (755)
T PRK09517 85 GQGDTP------------Y----TQARRL----LP----AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVA-S 139 (755)
T ss_pred CCCcCC------------H----HHHHHh----cC----CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCcc-c
Confidence 543211 1 111111 11 1357888 88988875543333334 59999998665 6
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
|...-...+.+..+.+..+.+...+.++..|+.|
T Consensus 140 T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiG 173 (755)
T PRK09517 140 TATKPDAPPALGVDGIAEIAAVAQDHGIASVAIG 173 (755)
T ss_pred cCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEEC
Confidence 5543111223444555555555544448888886
No 404
>PRK08005 epimerase; Validated
Probab=80.53 E-value=35 Score=29.70 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.|....+.++.+.. -++.+.+.+.+|..-...-.+...+=++.+++..++..++ ..++ ++.+.+..++++|+|.+-
T Consensus 114 nP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~--VDGG-I~~~~i~~l~~aGad~~V 189 (210)
T PRK08005 114 NPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECW--ADGG-ITLRAARLLAAAGAQHLV 189 (210)
T ss_pred CCCCCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEE--EECC-CCHHHHHHHHHCCCCEEE
Confidence 45555555555543 3678888777764322211233333344444444443333 2444 489999999999999888
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
.|
T Consensus 190 ~G 191 (210)
T PRK08005 190 IG 191 (210)
T ss_pred EC
Confidence 76
No 405
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=80.40 E-value=34 Score=28.84 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C----CCHHH
Q 020304 190 SDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G----ESDDD 264 (328)
Q Consensus 190 ~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g----Et~e~ 264 (328)
|.+..++..++.+++.|+..+.-++++.+- . ..+.+++.+.+....+ +|- +++-+ + .|.+.
T Consensus 104 P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~--~-----~~~~~~i~~~~~~~~~--~g~-----Iil~Hd~~~~~~t~~~ 169 (191)
T TIGR02764 104 PSGAFNKAVLKAAESLGYTVVHWSVDSRDW--K-----NPGVESIVDRVVKNTK--PGD-----IILLHASDSAKQTVKA 169 (191)
T ss_pred CCcCCCHHHHHHHHHcCCeEEEecCCCCcc--C-----CCCHHHHHHHHHhcCC--CCC-----EEEEeCCCCcHhHHHH
Confidence 333346777777777777766655544331 0 1234444443322222 341 22222 2 34556
Q ss_pred HHHHHHHHHhCCCCEEee
Q 020304 265 LKEAMADLRSIDVDILTL 282 (328)
Q Consensus 265 ~~~~l~~l~~l~~~~i~i 282 (328)
+...+..+++-|...+++
T Consensus 170 l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 170 LPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred HHHHHHHHHHCCCEEEEH
Confidence 666677777777666655
No 406
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.38 E-value=38 Score=30.72 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCC-CHHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRG-DLRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~-~~e~l~~L~~aG~~ 208 (328)
.+++.+.+.++++.+.|+..|.|..... ...++.+.++++.+++..+ +.+... +++.-+ ....+..+ ++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G----~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~-~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKDMAG----LLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAA-EAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCC----CCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 3566778899999999999999853222 1126899999999998764 444432 233222 23444444 68999
Q ss_pred EEeech
Q 020304 209 VFAHNI 214 (328)
Q Consensus 209 ~i~~~~ 214 (328)
.+-.++
T Consensus 220 ~vd~sv 225 (275)
T cd07937 220 IVDTAI 225 (275)
T ss_pred EEEEec
Confidence 887543
No 407
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.38 E-value=42 Score=29.81 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
.+.+.+.++.+++..++..+.+ .+++.+++.++.+.++|.|.+.+|-..++.+.. .+.++..+.++.+++
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v--~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~------~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVV--GFGLDSPEDARDALSAGADGVVVGTAFIEELEK------NGVESALNLLKKIRG 238 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEE--eCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHh------cCHHHHHHHHHHHHH
Confidence 3667777888887654444432 334448999999999999999987443333321 235666666665543
No 408
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.33 E-value=36 Score=28.99 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+...+.+.++.+.+.|++.+.+--.+.+.... ...-.++++.+++.. ..+.+...+++ ..+.++.+.++|.+.+
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~~~d---~~~~~~~~~~~g~dgv 84 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPN--LTFGPPVVKALRKHTDLPLDVHLMVEN---PERYIEAFAKAGADII 84 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCc--cccCHHHHHHHHhhCCCcEEEEeeeCC---HHHHHHHHHHcCCCEE
Confidence 34456788889999999988874322211111 112236677777654 22334444443 2567999999999998
Q ss_pred eec
Q 020304 211 AHN 213 (328)
Q Consensus 211 ~~~ 213 (328)
.+.
T Consensus 85 ~vh 87 (211)
T cd00429 85 TFH 87 (211)
T ss_pred EEC
Confidence 664
No 409
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=80.12 E-value=12 Score=33.98 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCC-CHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRG-DLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~-~~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++.+.+.|++.|.+....... .++.+.++++.+++..|++.+.+. +++.-+ ....+..+ ++|++.
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~-~aGa~~ 223 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCDTNGGT----LPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAV-EAGATQ 223 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCC----CHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHH-HcCCCE
Confidence 45556788888889999998885322211 258899999999988776555432 233222 34555555 689998
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+-.+
T Consensus 224 id~s 227 (273)
T cd07941 224 VQGT 227 (273)
T ss_pred EEEe
Confidence 7653
No 410
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.92 E-value=48 Score=30.27 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHHHHHcC--CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHSG--LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~aG--~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
+.++.+.+++ .+.+-+|+-.-..-.+-. .-..+.+...+.++.+++. .++.+.+- +..+.++..+.++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~-~l~~~~~~~~eiv~~vr~~-~~~pv~vK----i~~~~~~~~~~a~~l~~ 180 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGI-AIGQDPELSADVVKAVKDK-TDVPVFAK----LSPNVTDITEIAKAAEE 180 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCcc-ccccCHHHHHHHHHHHHHh-cCCCEEEE----CCCChhhHHHHHHHHHH
Confidence 5577777764 788887654432110000 0124677888888888872 24443322 23456788899999999
Q ss_pred CCCCEEeeec
Q 020304 275 IDVDILTLGQ 284 (328)
Q Consensus 275 l~~~~i~i~~ 284 (328)
.|++.+.+.+
T Consensus 181 ~G~d~i~v~n 190 (300)
T TIGR01037 181 AGADGLTLIN 190 (300)
T ss_pred cCCCEEEEEc
Confidence 9999998754
No 411
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=79.87 E-value=49 Score=30.31 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.+...++.+.+.+..-|.-.+...-.+. ++.+.+..+++.+.+... .+.+. +.-|.-.+.|.+..-.++|++++-
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~vPV~-lHLDHg~~~e~i~~ai~~GftSVM 105 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSEGAARYM-SGFYTVVKMVEGLMHDLNITIPVA-IHLDHGSSFEKCKEAIDAGFTSVM 105 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCCEE-EECCCCCCHHHHHHHHHcCCCEEE
Confidence 455566777777776664433322211121 125778888888776542 24553 344554578888899999999988
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCC-------HHHHHHHHHHHHhCCCCEEee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt-------~e~~~~~l~~l~~l~~~~i~i 282 (328)
++-..++ + ..+.+...++++.++. .|+.|-+-+ +=|-.+. ..+-.+..+|+++.|+|.+.+
T Consensus 106 ~DgS~l~-~-------eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAv 175 (286)
T PRK08610 106 IDASHSP-F-------EENVATTKKVVEYAHE--KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAP 175 (286)
T ss_pred EeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEe
Confidence 7533221 1 1133455678888898 888765432 3222111 235678889999999998777
Q ss_pred ecccCCCCCCc-ccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 283 GQYLQPTPLHL-TVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 283 ~~~l~PTp~~~-~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
. + -|--.. ...+.+ .++.++++....++..|-
T Consensus 176 a-i--Gt~HG~Y~~~p~L---d~~~L~~I~~~~~vPLVL 208 (286)
T PRK08610 176 A-L--GSVHGPYKGEPKL---GFKEMEEIGLSTGLPLVL 208 (286)
T ss_pred e-c--cccccccCCCCCC---CHHHHHHHHHHHCCCEEE
Confidence 3 3 111110 111222 355566665555665543
No 412
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=79.82 E-value=26 Score=32.23 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCC--CC-H---HHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFR--GD-L---RAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~--~~-~---e~l~~L~~ 204 (328)
+..++.+.+..+.+.|++.+...+|+++.-.+....+-.++++.+++.. -.+.+.++..+.. -+ + +.+++=.+
T Consensus 95 n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~~ 174 (296)
T PRK09432 95 TPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKSAQADLINLKRKVD 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567788888899999999999888876433322244457777777642 1233333332211 12 1 23444446
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
+|.+.+. . . .-++.+.+.+-++.+++ .|+. .-++.|+
T Consensus 175 aGA~~~i-T-----Q-------~~Fd~~~~~~f~~~~~~--~Gi~--vPIi~GI 211 (296)
T PRK09432 175 AGANRAI-T-----Q-------FFFDVESYLRFRDRCVS--AGID--VEIVPGI 211 (296)
T ss_pred cCCCeee-c-----c-------cccchHHHHHHHHHHHH--cCCC--CCEEeec
Confidence 7776322 1 1 12445556666666666 6643 2355555
No 413
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.79 E-value=18 Score=31.86 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=48.9
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+..+.++.+.+.|+..+++++.+.+.... + .-.++++.+.+.. ++.+. ..++..+.+.+..+.++|++.+.++
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~~-g--~~~~~i~~i~~~~-~iPvi--a~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLLE-G--VNTEPVKELVDSV-DIPVI--ASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCcC-C--CCHHHHHHHHHhC-CCCEE--EeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 56788888899999999998754321111 1 1134556666553 45553 3566667888888999999998885
No 414
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=79.70 E-value=43 Score=31.40 Aligned_cols=151 Identities=22% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH-HH---HHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL-RA---VETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~-e~---l~~L~~aG 206 (328)
++++..+.++++.+.|++.+-+-.|..+... ...+.-.+.++.+++.. +++.+.+-.|.. .+. +. ++.|.+.|
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~-~~~~~a~~~~~~l~~~~ 216 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-EDLREDLARVRAVREAVGPDVDLMVDANGR-WDLAEAIRLARALEEYD 216 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-HHHHHHHHHHHHHHHhhCCCCEEEEECCCC-CCHHHHHHHHHHhCccC
Confidence 4566778888888899998877544321110 11356678888888865 466665433433 243 33 33444444
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+..+- + -+. .. .++.++.+++. .+++ +..+|+..+..+..+.++.-.++.+.+-
T Consensus 217 i~~iE-------q---P~~--~~----~~~~~~~l~~~-~~ip------i~~dE~~~~~~~~~~~i~~~~~d~v~~k--- 270 (357)
T cd03316 217 LFWFE-------E---PVP--PD----DLEGLARLRQA-TSVP------IAAGENLYTRWEFRDLLEAGAVDIIQPD--- 270 (357)
T ss_pred CCeEc-------C---CCC--cc----CHHHHHHHHHh-CCCC------EEeccccccHHHHHHHHHhCCCCEEecC---
Confidence 43321 1 000 11 23334444441 2333 3335655555555555555556665551
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
++.. +.+ .+..++.++++++|++.
T Consensus 271 -~~~~-----GGi--~~~~~i~~~a~~~g~~~ 294 (357)
T cd03316 271 -VTKV-----GGI--TEAKKIAALAEAHGVRV 294 (357)
T ss_pred -cccc-----CCH--HHHHHHHHHHHHcCCeE
Confidence 2221 122 23455667777777773
No 415
>PRK01254 hypothetical protein; Provisional
Probab=79.68 E-value=19 Score=36.91 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=65.0
Q ss_pred chHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 135 EPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 135 ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
...+.++++.+ .|++.+.+.+|.+.++...+ .++++++.+.. +.+++ +....++++|+.|.+-|...+.
T Consensus 469 ~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d----~elIeel~~~hV~g~LkV----ppEH~Sd~VLk~M~Kp~~~~~e 540 (707)
T PRK01254 469 PTINLYRRARDLKGIKKILIASGVRYDLAVED----PRYVKELVTHHVGGYLKI----APEHTEEGPLSKMMKPGMGSYD 540 (707)
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCCccccccC----HHHHHHHHHhCCcccccc----ccccCCHHHHHHhCCCCcccHH
Confidence 45677777776 58999999888775553211 34555555432 12222 3344588999999887544322
Q ss_pred echhhHHHHHhhhc------------CCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 212 HNIETVKRLQRIVR------------DPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 212 ~~~et~~~~~~~~~------------~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
--.+.++++++.+. -++.+-++..+.++.+++ .|+.+
T Consensus 541 ~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLke--l~f~~ 589 (707)
T PRK01254 541 RFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKK--NRFRL 589 (707)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHH--hCCCc
Confidence 22333444432211 156788999999999999 88763
No 416
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=79.67 E-value=53 Score=30.55 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCC--C----HHHHHHHHHcC-CcEEeechhhHHHHHhhhcCCCCCHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRG--D----LRAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVL 238 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~--~----~e~l~~L~~aG-~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i 238 (328)
.+.+.++++.+++. +++.-..+|.+..+ + .+.++.+++.| +..+.++-.+. ... +..-.+ +.+
T Consensus 121 ~~e~~~~i~~i~~~-~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~--v~~----p~rit~---ell 190 (321)
T TIGR03822 121 PAELDAAFAYIADH-PEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP--VAD----PARVTP---ALI 190 (321)
T ss_pred HHHHHHHHHHHHhC-CCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc--ccC----hhhcCH---HHH
Confidence 46788888888865 56654456655443 2 25566777665 44444432110 000 000113 344
Q ss_pred HHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 239 KHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 239 ~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
+.+++ .|..+...+=... .|-.++..+.++.+++.|+....-+..+.. ..-+.+.+..+.+.+.++|+.
T Consensus 191 ~~L~~--~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g--------vNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 191 AALKT--SGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRG--------VNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHH--cCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC--------CCCCHHHHHHHHHHHHhcCCe
Confidence 45556 6644321111111 222366778889999999864332212210 112356788888889999998
Q ss_pred eeeeccc
Q 020304 318 YVASGPL 324 (328)
Q Consensus 318 ~~~~g~~ 324 (328)
.++...+
T Consensus 261 pyyl~~~ 267 (321)
T TIGR03822 261 PYYLHHL 267 (321)
T ss_pred eEEEEec
Confidence 8876543
No 417
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=79.66 E-value=62 Score=31.68 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCCCch-HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE-EEeCCCCCC----HHHHHHHHH
Q 020304 131 PDPMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE-CLTSDFRGD----LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei-~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~-~~t~~~~~~----~e~l~~L~~ 204 (328)
.+|+++ .+.++.+.+.|++.+.+... +.+ ...+.+.++.+++....+.+. +++.+...+ .+.++.+.+
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~~----lnd--~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFDA----LND--VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEe----cCc--HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 456665 56778888999998766432 221 356777888888874222221 222211112 367888999
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|++++.+
T Consensus 166 ~Gad~I~i 173 (448)
T PRK12331 166 MGADSICI 173 (448)
T ss_pred cCCCEEEE
Confidence 99999987
No 418
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=79.57 E-value=17 Score=34.00 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=78.2
Q ss_pred chHHHHHHHHHCCC--cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 135 EPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 135 ei~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
+-.+.++++.+.|+ +-+.+-..++ ..+.+.++++.|++.+|+..+.+- + ..+.+.+..|.++|+|.+.+
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~ir~~~p~~~vi~g-~--V~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHIKKHLPETFVIAG-N--VGTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHHHhhCCCCeEEEE-e--cCCHHHHHHHHHcCcCEEEE
Confidence 34577788888865 8777744332 147899999999999888776542 1 23889999999999999876
Q ss_pred chhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 213 NIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 213 ~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+.-.... ..+... ..+..+--+.++..+++. ..++ +|. |=-.+..|+.+.+ .+|++.+.+...+
T Consensus 168 g~~~G~~~~t~~~~-g~~~~~w~l~ai~~~~~~-~~ip----VIAdGGI~~~~Di~KaL----a~GA~aV~vG~~~ 233 (326)
T PRK05458 168 GIGPGKVCITKIKT-GFGTGGWQLAALRWCAKA-ARKP----IIADGGIRTHGDIAKSI----RFGATMVMIGSLF 233 (326)
T ss_pred CCCCCccccccccc-CCCCCccHHHHHHHHHHH-cCCC----EEEeCCCCCHHHHHHHH----HhCCCEEEechhh
Confidence 4322211 111111 011111133445555442 2333 222 1135777766554 3588888876544
No 419
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.49 E-value=7 Score=35.57 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
..+.+.+.+.++.+.+.|++.+++.| |+.+.+. .+.-.++++...+...++-+.+.++.....-+.++..+++|.
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt---~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLS---FQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCC---HHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 34556678889999999999998855 5666665 466667777665543233222211111112467778888999
Q ss_pred cEEee
Q 020304 208 DVFAH 212 (328)
Q Consensus 208 ~~i~~ 212 (328)
|.+.+
T Consensus 93 d~v~v 97 (279)
T cd00953 93 YAIAS 97 (279)
T ss_pred CEEEE
Confidence 98765
No 420
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=79.42 E-value=42 Score=29.30 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=82.0
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEeechhhH
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+++.+.+.|.+-+.+.|..+ .+.+.+.++..++....+.+....+. | ++..+.|+++|++.+..+.-.-
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-------~~TI~~~i~~A~~~~~~v~iDl~~~~---~~~~~~~~l~~~gvd~~~~H~g~D 141 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-------DATIKKAIKVAKEYGKEVQIDLIGVW---DPEQRAKWLKELGVDQVILHRGRD 141 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-------HHHHHHHHHHHHHcCCeEEEEeecCC---CHHHHHHHHHHhCCCEEEEEeccc
Confidence 56677889999888887553 37788889988887555555544332 4 5788888889999876532111
Q ss_pred HHHHhhhcCCCCCH-HHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 218 KRLQRIVRDPRAGY-EQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 218 ~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.+. . +.++ .+-++.++.+.+ .|+.+. +-| |=+++++ ..+..++++.+-+...+
T Consensus 142 ~q~-~-----G~~~~~~~l~~ik~~~~--~g~~vA---VaG-GI~~~~i----~~~~~~~~~ivIvGraI 195 (217)
T COG0269 142 AQA-A-----GKSWGEDDLEKIKKLSD--LGAKVA---VAG-GITPEDI----PLFKGIGADIVIVGRAI 195 (217)
T ss_pred Hhh-c-----CCCccHHHHHHHHHhhc--cCceEE---Eec-CCCHHHH----HHHhcCCCCEEEECchh
Confidence 111 1 4456 677888888888 887643 223 5666654 55667888887776665
No 421
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=79.27 E-value=36 Score=33.74 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEe-CCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT-SDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t-~~~~~~~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++++.+.|++.|.|-....- + .+..+.++++.+++..+ ++.+.+.+ ++.-+.-...-.-.++|++.
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkDtaGl-l---~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKDMAAL-L---KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccC-C---CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 5666789999999999999999532221 2 26899999999999874 65555433 22112333344445889998
Q ss_pred Eee
Q 020304 210 FAH 212 (328)
Q Consensus 210 i~~ 212 (328)
+-.
T Consensus 229 vDt 231 (499)
T PRK12330 229 VDT 231 (499)
T ss_pred EEe
Confidence 754
No 422
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=79.16 E-value=46 Score=29.60 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc-CC
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GL 207 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l-~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a-G~ 207 (328)
+.+..++.+.++.+.+.|+.++.+|..+.+-. .-.+.+-+.++.+.. ++.+. .+++..+-+-++.|++. |+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-----~ipvi--aSGGv~s~~Di~~l~~~~G~ 215 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-----DIPVI--ASGGVSSLDDIKALKELSGV 215 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-----CcCEE--EecCcCCHHHHHHHHhcCCC
Confidence 34445778999999999999999997654433 222334444444433 34443 35666689999999999 89
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHH
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLK 239 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~ 239 (328)
..+.++ +.+|. .+.+.++.++.++
T Consensus 216 ~GvIvG----~ALy~----g~~~l~ea~~~~~ 239 (241)
T COG0106 216 EGVIVG----RALYE----GKFTLEEALACVR 239 (241)
T ss_pred cEEEEe----hHHhc----CCCCHHHHHHHHh
Confidence 888876 34654 3567787777665
No 423
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=79.11 E-value=26 Score=32.09 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.+...++.+.+.+..-|.-.+... ....+.+.+..+++.+.+.. .+.+ ++.-|.-.+.+.+..-.++|++++-++
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~--~~~~~~~~~~~~~~~~a~~~-~vPV-alHLDH~~~~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSE--VKYMGLEYLAAMVKAAAEEA-SVPV-ALHLDHGKDFEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHH--HHHHHHHHHHHHHHHHHHHS-TSEE-EEEEEEE-SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhh--hhhhhHHHHHHHHHHHHHHc-CCCE-EeecccCCCHHHHHHHHHhCccccccc
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CCCHH---------HHHHHHHHHHhCCCCEEe
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GESDD---------DLKEAMADLRSIDVDILT 281 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gEt~e---------~~~~~l~~l~~l~~~~i~ 281 (328)
...++---+ .+...++++.+++ .|+.|-+-+ |-|. ..... +-.+..+|+++.|+|.+.
T Consensus 104 gS~l~~eeN--------i~~T~~vv~~ah~--~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LA 173 (287)
T PF01116_consen 104 GSALPFEEN--------IAITREVVEYAHA--YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALA 173 (287)
T ss_dssp -TTS-HHHH--------HHHHHHHHHHHHH--TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEE
T ss_pred CCcCCHHHH--------HHHHHHHHHhhhh--hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEE
Q ss_pred eecccCCCCCCcccCCC--CCHHHHHHHHHHHHhc-CCceeeec
Q 020304 282 LGQYLQPTPLHLTVKEY--VTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 282 i~~~l~PTp~~~~~~~~--~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+. ....+-.... -+.-.++.|+++.... ++..|-=|
T Consensus 174 va-----iGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG 212 (287)
T PF01116_consen 174 VA-----IGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG 212 (287)
T ss_dssp E------SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS
T ss_pred Ee-----cCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC
No 424
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.04 E-value=38 Score=29.82 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=49.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++.+.++.+.+. ++++++..-+.. .. + ...-.++++.+.+. .++.+.+ .++..+.+.++.|.++|++++.+|-
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~-g-~~~n~~~i~~i~~~-~~~pv~~--gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FE-G-KPKNLDVVKNIIRE-TGLKVQV--GGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hc-C-CcchHHHHHHHHhh-CCCCEEE--cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 577888888877 888888543321 11 1 11234566666655 3555543 5566689999999999999988864
Q ss_pred hh
Q 020304 215 ET 216 (328)
Q Consensus 215 et 216 (328)
++
T Consensus 104 aa 105 (228)
T PRK04128 104 KA 105 (228)
T ss_pred hh
Confidence 43
No 425
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=78.99 E-value=5.2 Score=34.79 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHHCCCcEEEEEecc-CCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVD-RDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~-~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.++..+.+++..+.|+..+=+.++. .|... ..+.+++..+++.+++..+++.+++-|. ++++++.--++|.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHHcCc
Confidence 3456667888899999988776543 11111 1235688888888887445777766553 5677766666677
Q ss_pred cEEe
Q 020304 208 DVFA 211 (328)
Q Consensus 208 ~~i~ 211 (328)
+.++
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6554
No 426
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=78.98 E-value=13 Score=32.43 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
....+.++.+.+.|++++++++-+...... + .-.++++.+++. .++.+. .+++..+.+.++.+.+.|++.+.++
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g--~~~~~i~~i~~~-~~ipvi--a~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGTLS-G--PNFELTKELVKA-VNVPVI--ASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCCcC-C--CCHHHHHHHHHh-CCCCEE--EeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 455778888999999999887644322211 1 125566666665 345553 3566668888888999999999885
No 427
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=78.94 E-value=57 Score=30.55 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCCc-----HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDGG-----SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~~-----~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++...+.|+.-+.+.......++... .+++.++++.+++..|+..+.-+..+ +...++.|++.|++.++++
T Consensus 191 ~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d 267 (346)
T PRK00115 191 YLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLD 267 (346)
T ss_pred HHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeC
Confidence 334445679887755321112233211 24567777888776444333222222 4567899999999988774
No 428
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=78.83 E-value=18 Score=32.88 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+++.++.+.|++.+.+. + +. ++.+.++++.+++.++.+.+.+ .+++ +++.+..+.++|+|.+.++
T Consensus 193 ~eea~~A~~~gaD~I~ld--~---~~---p~~l~~~~~~~~~~~~~i~i~A--sGGI-~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 193 LEEALAAAEAGADILQLD--K---FS---PEELAELVPKLRSLAPPVLLAA--AGGI-NIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHHHHHHHHcCCCEEEEC--C---CC---HHHHHHHHHHHhccCCCceEEE--ECCC-CHHHHHHHHHcCCcEEEEC
Confidence 355666678899887773 1 22 3667777877776655666654 3444 9999999999999999664
No 429
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=78.77 E-value=74 Score=31.72 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=70.8
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH------HhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK------KQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik------~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+.+.++.+.+.+...+.+...+.....--...++.+.+..-. +....+.+-+......-+.|.++.|.++|+|.
T Consensus 184 L~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~ 263 (505)
T PLN02274 184 LEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDV 263 (505)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCE
Confidence 456667777888888766532211111001234444333211 11112333322211112479999999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.++.- .++ ....++.++++++.+++.. +|.|---|.++ ...+.+.|+|.+.+
T Consensus 264 i~iD~~-----------~g~-~~~~~~~i~~ik~~~p~~~----vi~g~v~t~e~----a~~a~~aGaD~i~v 316 (505)
T PLN02274 264 VVLDSS-----------QGD-SIYQLEMIKYIKKTYPELD----VIGGNVVTMYQ----AQNLIQAGVDGLRV 316 (505)
T ss_pred EEEeCC-----------CCC-cHHHHHHHHHHHHhCCCCc----EEEecCCCHHH----HHHHHHcCcCEEEE
Confidence 988641 133 3556677888888666655 45554456665 45555789998866
No 430
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=78.71 E-value=42 Score=30.27 Aligned_cols=76 Identities=8% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~-~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
+++.+.+.++.+.+.|+..+.+.....- + .++++.++++.+++..+. +.+..- +++.-+. ...+..+ ++|++
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~-~aGa~ 210 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIVDSFGS-M---YPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAI-ELGVE 210 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCC-C---CHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHH-HcCCC
Confidence 4567788999999999999988532221 1 258999999999987642 555432 2332222 3444444 78998
Q ss_pred EEee
Q 020304 209 VFAH 212 (328)
Q Consensus 209 ~i~~ 212 (328)
.+-.
T Consensus 211 ~vd~ 214 (266)
T cd07944 211 IIDA 214 (266)
T ss_pred EEEE
Confidence 8764
No 431
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.70 E-value=55 Score=30.22 Aligned_cols=128 Identities=12% Similarity=0.120 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCcEEeechhh---HHHH-----HhhhcCCCCCHHH----HHHHHHHHHHhC-CCCeEEEeEEEE--c--C
Q 020304 197 RAVETLVHSGLDVFAHNIET---VKRL-----QRIVRDPRAGYEQ----SLEVLKHAKLSK-KGLITKSSIMLG--L--G 259 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et---~~~~-----~~~~~~~~~~~~~----~l~~i~~~~~~~-~Gi~v~~~~ivG--l--g 259 (328)
+.++.++++|+|.+-++.-- ++.+ ++.-..-+.+.+. .++.++.+++.. .++.+...+=.+ . |
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 44667788999998774421 1211 1100001223433 356666666632 344444333211 1 4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCc-ccCCCCCHHHHHHHHHHHHhcCCceeeeccc
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL-TVKEYVTPEKFDFWKAYGESIGFRYVASGPL 324 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~-~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~ 324 (328)
.+.++..+.++.+.+.|++.+.+.......+... ..........++.++.+....++..+..|.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi 290 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGI 290 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCC
Confidence 5889999999999999999998853321111100 0000111223344455555567777776643
No 432
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=78.70 E-value=42 Score=28.84 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
..+.++++++.+.|++.+++---+....++ ...=.-+++.+++... -+.++..... .++.++.++++|.+-+
T Consensus 17 anL~~e~~~~l~~GadwlHlDVMDg~FVpN--iT~G~pvV~slR~~~~~~~ffD~HmMV~~---Peq~V~~~a~agas~~ 91 (224)
T KOG3111|consen 17 ANLAAECKKMLDAGADWLHLDVMDGHFVPN--ITFGPPVVESLRKHTGADPFFDVHMMVEN---PEQWVDQMAKAGASLF 91 (224)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecccccCC--cccchHHHHHHHhccCCCcceeEEEeecC---HHHHHHHHHhcCcceE
Confidence 356778889999999988663222111221 1111235666666421 1344433321 4678999999999999
Q ss_pred eechhh
Q 020304 211 AHNIET 216 (328)
Q Consensus 211 ~~~~et 216 (328)
++..|.
T Consensus 92 tfH~E~ 97 (224)
T KOG3111|consen 92 TFHYEA 97 (224)
T ss_pred EEEEee
Confidence 886654
No 433
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=78.70 E-value=15 Score=36.63 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++++.+.|++-|.+-..+. ......+.+++||+.+|+..+.+ +...+.+....+.++|+|.+.++
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g------~~~~~~~~i~~ik~~~p~~~vi~---g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQG------DSIYQLEMIKYIKKTYPELDVIG---GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCC------CcHHHHHHHHHHHHhCCCCcEEE---ecCCCHHHHHHHHHcCcCEEEEC
Confidence 3446788899999999888854332 23677799999999988877643 12248899999999999999765
Q ss_pred hhhHH-HHHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETVK-RLQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~~-~~~~~~~~~~~-~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+-... -..+...+.+. ....+...-+.+++ .++++.++ |=-.+..|+.+.+ .+|++.+.+...+
T Consensus 318 ~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~--~~vpVIad---GGI~~~~di~kAl----a~GA~~V~vGs~~ 383 (505)
T PLN02274 318 MGSGSICTTQEVCAVGRGQATAVYKVASIAAQ--HGVPVIAD---GGISNSGHIVKAL----TLGASTVMMGSFL 383 (505)
T ss_pred CCCCccccCccccccCCCcccHHHHHHHHHHh--cCCeEEEe---CCCCCHHHHHHHH----HcCCCEEEEchhh
Confidence 42211 01111110011 11222233333344 45553222 2234556655443 4788888876554
No 434
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=78.60 E-value=43 Score=29.60 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc----HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG----SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~----~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.|....+.++.+... ++.+.+.+.+|..-...- .+.+.++-+.+.++..++.++ ..++ ++.+.+..++++|+
T Consensus 126 nP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie--VDGG-I~~~ti~~l~~aGa 201 (228)
T PRK08091 126 CPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLIS--IDGS-MTLELASYLKQHQI 201 (228)
T ss_pred CCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEE--EECC-CCHHHHHHHHHCCC
Confidence 455555556655543 678888777754222111 123333333333332233343 3444 48999999999999
Q ss_pred cEEeec
Q 020304 208 DVFAHN 213 (328)
Q Consensus 208 ~~i~~~ 213 (328)
|.+-.|
T Consensus 202 D~~V~G 207 (228)
T PRK08091 202 DWVVSG 207 (228)
T ss_pred CEEEEC
Confidence 988776
No 435
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=78.54 E-value=40 Score=31.37 Aligned_cols=119 Identities=10% Similarity=0.140 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCcEEee-chhhHHHHHhhhcCCCCCHHHHHHHHHHH----HHhCCCCeEE---------------EeEEE
Q 020304 197 RAVETLVHSGLDVFAH-NIETVKRLQRIVRDPRAGYEQSLEVLKHA----KLSKKGLITK---------------SSIML 256 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~-~~et~~~~~~~~~~~~~~~~~~l~~i~~~----~~~~~Gi~v~---------------~~~iv 256 (328)
+.++.+.+.|+|.+.+ ++++.....+...+...+.++.++.++.+ |+.++++.+. ...+-
T Consensus 151 ~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~id 230 (315)
T TIGR01370 151 SYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVS 230 (315)
T ss_pred HHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhce
Confidence 4478888999999987 45554322110000122334555555554 7755555431 11222
Q ss_pred Ec-CC----------CHHHHHHH---HHHHHhCCCCEEeeecccCC-CCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 257 GL-GE----------SDDDLKEA---MADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 257 Gl-gE----------t~e~~~~~---l~~l~~l~~~~i~i~~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
|+ .| ++++.... ++.+++.|...+.+ .|..| ++.. -.......+.+.+++.||..|.+
T Consensus 231 gV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~I-DY~~~~~~~~------~n~~~~~~~~~~~~~~Gf~pYVs 303 (315)
T TIGR01370 231 GWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTV-DYVDDGTKTN------ENPARMKDAAEKARAAGLIPYVA 303 (315)
T ss_pred EEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEE-EecCCcccch------hhHHHHHHHHHHHHHcCCeeeec
Confidence 33 22 23444433 44555556776666 56633 2211 01234567788899999988776
Q ss_pred c
Q 020304 322 G 322 (328)
Q Consensus 322 g 322 (328)
=
T Consensus 304 d 304 (315)
T TIGR01370 304 E 304 (315)
T ss_pred C
Confidence 3
No 436
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=78.52 E-value=11 Score=34.16 Aligned_cols=65 Identities=23% Similarity=0.372 Sum_probs=47.0
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+++.++...|++.+.+.. +. ++.+.++++.+++. +.+.+.+ .++ ++.+.+..++++|+|.+.++
T Consensus 191 ~eea~~A~~~gaD~I~ld~-----~~---~e~l~~~v~~i~~~-~~i~i~a--sGG-It~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 191 LEEAEEALEAGADIIMLDN-----MS---PEELKEAVKLLKGL-PRVLLEA--SGG-ITLENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhccC-CCeEEEE--ECC-CCHHHHHHHHHcCCCEEEEc
Confidence 3566666778888887721 22 47788888877765 5666654 344 49999999999999999875
No 437
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=78.51 E-value=33 Score=27.60 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCC---CCHHHHHHHHHcCCcEEee
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFR---GDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~---~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.++.+.+.+.+-+.++.-... ....+.++++.+++.. +++.+.+..+... ..++..+.|++.|++.+..
T Consensus 44 e~i~~~a~~~~~d~V~lS~~~~~-----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 44 EEFIDAAIETDADAILVSSLYGH-----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHcCCCEEEEcCcccc-----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 44556667777887777643321 1477888888888873 3565544222211 1356778899999998876
No 438
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=78.44 E-value=80 Score=31.95 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=75.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEeCCCCCC-HHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~---~~~~i~~~t~~~~~~-~e~l~~L~~aG 206 (328)
.+.++-+++++.+.+.|+++|-+. - |..+. .++. .++.+.+.. ++..+.++++....+ +..++.+..++
T Consensus 45 ~s~e~Ki~ia~~L~~~Gvd~IE~G--f-p~~s~---~D~e-~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~ 117 (564)
T TIGR00970 45 MSPARKRRYFDLLVRIGFKEIEVG--F-PSASQ---TDFD-FVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAK 117 (564)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--C-CCCCH---HHHH-HHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCC
Confidence 455677889999999999988764 2 22232 3333 333333331 256676666542211 23455555555
Q ss_pred CcEEeechhhHHHHH-hhhcCCCCCHHHHH----HHHHHHHHhCCCCe----EEEeEEEEc-CC----C-HHHHHHHHHH
Q 020304 207 LDVFAHNIETVKRLQ-RIVRDPRAGYEQSL----EVLKHAKLSKKGLI----TKSSIMLGL-GE----S-DDDLKEAMAD 271 (328)
Q Consensus 207 ~~~i~~~~et~~~~~-~~~~~~~~~~~~~l----~~i~~~~~~~~Gi~----v~~~~ivGl-gE----t-~e~~~~~l~~ 271 (328)
...+.+.+-+.+... ... +.+.++.+ ++++.+++ .|.. +.+.+.+-+ +| + .+-+.+.++.
T Consensus 118 ~~~v~i~~~~Sd~h~~~~l---~~s~ee~l~~~~~~v~~ak~--~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~ 192 (564)
T TIGR00970 118 RATVHFYNATSILFREVVF---RASRAEVQAIATDGTKLVRK--CTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEA 192 (564)
T ss_pred CCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--hcccccccccceEEEEEecccCCCCCHHHHHHHHHH
Confidence 556776655555432 222 33555544 56666777 6653 233333333 55 4 5667788888
Q ss_pred HHhCCCC
Q 020304 272 LRSIDVD 278 (328)
Q Consensus 272 l~~l~~~ 278 (328)
+.+.|++
T Consensus 193 a~~ag~~ 199 (564)
T TIGR00970 193 VKEVWAP 199 (564)
T ss_pred HHHhCCC
Confidence 8888763
No 439
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.33 E-value=44 Score=28.87 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE--eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF--AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLS 244 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i--~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 244 (328)
..+.++++...+. ++..++.-|= . .+-+-+..+.-.|-.++ ++|.+..-+.+.. ...+.++++++++.+.+
T Consensus 10 g~l~~~I~ff~~~-~~~~lef~TK-~-~nv~~Ll~l~~~~~t~~rfSlnp~~Ii~~~E~---~T~sl~~Rl~Aa~k~a~- 82 (199)
T TIGR00620 10 HTLKRAIEHFGQS-DFGKLRFVTK-F-HHVDHLLDAKHNGKTRFRFSINADYVIKNFEP---GTSPLDKRIEAAVKVAK- 82 (199)
T ss_pred chHHHHHHHHccC-CCcEEEEEEc-c-cchhhHhcCCCCCCEEEEEEeCHHHHHHHhcC---CCCCHHHHHHHHHHHHH-
Confidence 3566677777655 6777765441 1 14455555655664444 4455444333332 35789999999999999
Q ss_pred CCCCeEEEeE--EEEcCCCHHHHHHHHHHHH-hCC
Q 020304 245 KKGLITKSSI--MLGLGESDDDLKEAMADLR-SID 276 (328)
Q Consensus 245 ~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l~-~l~ 276 (328)
+|++|+..+ |+=+....++-.++++.+. ++.
T Consensus 83 -aGy~Vg~~~~PIi~~egW~e~Y~~l~~~l~~~l~ 116 (199)
T TIGR00620 83 -AGYPLGFIIAPIYIHEGWKEGYRNLLEKLDEALP 116 (199)
T ss_pred -cCCeEEEEeeceEeeCChHHHHHHHHHHHHHhCC
Confidence 999988776 4433445566667777764 444
No 440
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.32 E-value=12 Score=34.27 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+ +.++ ++.+.+.++.++.. ..+++ +++ ++.+.+..+++.|+|.++.|.
T Consensus 204 leea~ea~~~gaDiI~L-----Dn~s---~e~l~~av~~~~~~---~~lea--SGG-I~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 204 LDQLEEALELGVDAVLL-----DNMT---PDTLREAVAIVAGR---AITEA--SGR-ITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHhCCC---ceEEE--ECC-CCHHHHHHHHhcCCCEEEeCh
Confidence 56778888899988777 2243 58888888876543 23443 444 499999999999999999864
No 441
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=78.31 E-value=81 Score=32.13 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCCCch-HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE---EEeCCCCCC----HHHHHHH
Q 020304 131 PDPMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE---CLTSDFRGD----LRAVETL 202 (328)
Q Consensus 131 ~~~~ei-~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~---~~t~~~~~~----~e~l~~L 202 (328)
.+++++ ...++.+.+.|++-+.+.. .+.+ .+.+...++.+++.. ..+. |++.....+ .+.++.+
T Consensus 92 ~~~d~vv~~~v~~a~~~Gidv~Rifd----~lnd--~~n~~~~i~~~k~~G--~~~~~~i~yt~sp~~t~e~~~~~ak~l 163 (596)
T PRK14042 92 NYADDVVRAFVKLAVNNGVDVFRVFD----ALND--ARNLKVAIDAIKSHK--KHAQGAICYTTSPVHTLDNFLELGKKL 163 (596)
T ss_pred cCChHHHHHHHHHHHHcCCCEEEEcc----cCcc--hHHHHHHHHHHHHcC--CEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 357776 4577788999999876642 2332 577888888888874 3332 344332234 3678889
Q ss_pred HHcCCcEEee
Q 020304 203 VHSGLDVFAH 212 (328)
Q Consensus 203 ~~aG~~~i~~ 212 (328)
.++|++.+.+
T Consensus 164 ~~~Gad~I~I 173 (596)
T PRK14042 164 AEMGCDSIAI 173 (596)
T ss_pred HHcCCCEEEe
Confidence 9999999987
No 442
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.29 E-value=14 Score=34.01 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-|.+ +.++ ++.+.+.++.++. .+.+++ +++ ++.+.+..+++.|+|.++.|.
T Consensus 215 leea~eA~~aGaDiImL-----Dnms---pe~l~~av~~~~~---~~~lEa--SGG-It~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 215 LAQLETALAHGAQSVLL-----DNFT---LDMMREAVRVTAG---RAVLEV--SGG-VNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHhhcC---CeEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 57788888899988877 2344 5788888876653 344544 444 499999999999999998753
No 443
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=78.22 E-value=59 Score=30.29 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCH-HHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGD--LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGY-EQSLEVLKHAK 242 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~--~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~-~~~l~~i~~~~ 242 (328)
.+.+.+.++..++.. +..+.+..++...+ .+.++.+.++|+|.+-+|+..... ..... +... +.+.+.++.++
T Consensus 84 ~~~~~~~i~~~~~~~-~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~~~~~--g~~~~~~~~eiv~~v~ 159 (325)
T cd04739 84 PEEYLELIRRAKRAV-SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT-DPDIS--GAEVEQRYLDILRAVK 159 (325)
T ss_pred HHHHHHHHHHHHhcc-CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-CCCcc--cchHHHHHHHHHHHHH
Confidence 567777676665442 34443333332212 267778888899988887754210 00111 1222 44556677666
Q ss_pred HhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 243 LSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 243 ~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+. ..+++ ++=+.-..+++.+.++.+.+.|++.+.+.+-.
T Consensus 160 ~~-~~iPv----~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 160 SA-VTIPV----AVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred hc-cCCCE----EEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 52 23443 22231123468888889999999988886543
No 444
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=78.10 E-value=48 Score=29.17 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+.+..+.+.|+.++----|.-++....+.+.+.++.+.++...++..+.+.+ . .+.+.+-.+..+|++.+++..+.+
T Consensus 117 ~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS--~-r~~~~v~~a~~~G~d~vTvp~~vl 193 (222)
T PRK12656 117 FQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS--F-KNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred HHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe--c-CCHHHHHHHHHcCCCEEecCHHHH
Confidence 4455556688887744323333333223466667777777665566665433 2 367788888899999999999999
Q ss_pred HHHHh
Q 020304 218 KRLQR 222 (328)
Q Consensus 218 ~~~~~ 222 (328)
+++.+
T Consensus 194 ~~l~~ 198 (222)
T PRK12656 194 EAAFA 198 (222)
T ss_pred HHHhc
Confidence 88754
No 445
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=77.96 E-value=49 Score=29.19 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=108.9
Q ss_pred CCch-HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEP-ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei-~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
|-++ .+.++.+.+.|..-+--|+.-.|..- ....+-.++++.+++. |++..-+++|+ -.-++...++|...+.
T Consensus 38 pt~vKveLI~~Lse~Gl~~vEtTSFVSpKWV-PQl~D~~ev~k~i~~~-~Gv~yPVLtPN----lkGf~~AvaaGa~Eva 111 (316)
T KOG2368|consen 38 PTEVKVELIDRLSECGLQVVETTSFVSPKWV-PQLADHNEVMKGIRKF-PGVSYPVLTPN----LKGFEAAVAAGAEEVA 111 (316)
T ss_pred CchHHHHHHHHHHHcCCceeeeecccCcccc-ccccchHHHHHhhhcC-CCccccccCcc----hhhHHHHHhcCceeEE
Confidence 3344 68888999999987766654322111 0123445667777654 78877777764 3556667788988887
Q ss_pred echhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEc-CC---CHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGL-GE---SDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGl-gE---t~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+--...+.+- ++...-..+..++.+.++.+++ .++.+...+ .+|- .| +++-+.+..+.+-++|...+++.
T Consensus 112 vFgaASe~FslkNiNctiees~~rf~~v~kaA~~--~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLG 189 (316)
T KOG2368|consen 112 VFGAASEAFSLKNINCTIEESLKRFMEVLKAAQE--HNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLG 189 (316)
T ss_pred eeehhhhhhhhccCCccHHHHHHHHHHHHHHHHH--cCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecc
Confidence 6222222221 2111011345667788888899 898876554 6666 33 68889999999999999888886
Q ss_pred cccC-CCCCCc-----ccCCCCCHHHH---------HHHHH--HHHhcCCceeee
Q 020304 284 QYLQ-PTPLHL-----TVKEYVTPEKF---------DFWKA--YGESIGFRYVAS 321 (328)
Q Consensus 284 ~~l~-PTp~~~-----~~~~~~~~~~~---------~~l~~--~~~~~G~~~~~~ 321 (328)
..+- -||..+ .+...++++.+ +.|.+ .+.++|++.+-+
T Consensus 190 DTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDS 244 (316)
T KOG2368|consen 190 DTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDS 244 (316)
T ss_pred cccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhh
Confidence 5541 255432 11223333222 23333 356889988765
No 446
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=77.85 E-value=7 Score=33.83 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=63.7
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC-CCCCC-HHHHHHHHHcCCcEEeec
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-DFRGD-LRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~-~~~~~-~e~l~~L~~aG~~~i~~~ 213 (328)
..+.++.+++.|++.++|.--+++.- -+.+.+.++++..+ ++.+..... +...+ .+.++.|.+.|++++.=+
T Consensus 74 M~~dI~~~~~~GadG~VfG~L~~dg~--iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTS 147 (201)
T PF03932_consen 74 MKEDIRMLRELGADGFVFGALTEDGE--IDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTS 147 (201)
T ss_dssp HHHHHHHHHHTT-SEEEE--BETTSS--B-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHHcCCCeeEEEeECCCCC--cCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECC
Confidence 36777788899999998854333211 13566777776654 455543211 22234 578999999999998632
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
=.. .. -....+...+.++.++ .++. +|.|=|=+.+.+.+.. ++.|+..++.
T Consensus 148 Gg~----~~----a~~g~~~L~~lv~~a~---~~i~----Im~GgGv~~~nv~~l~---~~tg~~~~H~ 198 (201)
T PF03932_consen 148 GGA----PT----ALEGIENLKELVEQAK---GRIE----IMPGGGVRAENVPELV---EETGVREIHG 198 (201)
T ss_dssp TTS----SS----TTTCHHHHHHHHHHHT---TSSE----EEEESS--TTTHHHHH---HHHT-SEEEE
T ss_pred CCC----CC----HHHHHHHHHHHHHHcC---CCcE----EEecCCCCHHHHHHHH---HhhCCeEEee
Confidence 100 00 0123344333333322 3443 7888766666655443 3467777665
No 447
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=77.79 E-value=71 Score=30.98 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE--eCCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL--TSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~--t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+.++..+.++++.+.|++.+.+. . +.. .....+.++.+++.++...+..- ..+ .....++.+.++|.+.
T Consensus 14 ~~~~~~~~~~~~~~~Gv~~ie~g--~-p~~----~~~~~~~i~~l~~~~~~~~ii~D~kl~d--~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 14 ELDRAVEIAKEAVAGGADWIEAG--T-PLI----KSEGMNAIRTLRKNFPDHTIVADMKTMD--TGAIEVEMAAKAGADI 84 (430)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeC--C-HHH----HHhhHHHHHHHHHHCCCCEEEEEeeecc--chHHHHHHHHHcCCCE
Confidence 34556777888888999877652 2 111 13446677777776543222110 111 1245889999999999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+.+..+. +.....+.++.+++ .|+.+ ++|+ .+|..+ .++.+.++|++.+.++
T Consensus 85 V~v~g~~-------------~~~~~~~~i~~a~~--~G~~~----~~g~~s~~t~~e---~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 85 VCILGLA-------------DDSTIEDAVRAARK--YGVRL----MADLINVPDPVK---RAVELEELGVDYINVH 138 (430)
T ss_pred EEEecCC-------------ChHHHHHHHHHHHH--cCCEE----EEEecCCCCHHH---HHHHHHhcCCCEEEEE
Confidence 8852111 11123466777788 78764 4442 244322 2455667899988775
No 448
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=77.72 E-value=47 Score=28.94 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCCCCCccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 020304 114 TRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR 193 (328)
Q Consensus 114 ~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~ 193 (328)
...+..|++-..........++ .+.++++.+.|++-+.+- -.+...+...++.+.+++......+.++.|+
T Consensus 2 ~~~~~~lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQlR------~K~~~~~~~~~~a~~~~~lc~~~~v~liINd-- 72 (211)
T COG0352 2 SMELLRLYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQLR------EKDLSDEEYLALAEKLRALCQKYGVPLIIND-- 72 (211)
T ss_pred CCcccceEEEcCCccccccchh-HHHHHHHHhCCCeEEEEe------cCCCChHHHHHHHHHHHHHHHHhCCeEEecC--
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADL 272 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l 272 (328)
+-+++. +.|.|.+.++.+ .....+..+.+. +++ ++|. ..+.++ +..+
T Consensus 73 -~~dlA~---~~~AdGVHlGq~------------D~~~~~ar~~~~------~~~------iIG~S~h~~ee----a~~A 120 (211)
T COG0352 73 -RVDLAL---AVGADGVHLGQD------------DMPLAEARELLG------PGL------IIGLSTHDLEE----ALEA 120 (211)
T ss_pred -cHHHHH---hCCCCEEEcCCc------------ccchHHHHHhcC------CCC------EEEeecCCHHH----HHHH
Q ss_pred HhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 273 RSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 273 ~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.++|+|++.+.++. ||+. ++...+.-++.++.+.....+-.|++|
T Consensus 121 ~~~g~DYv~~Gpif-pT~t----K~~~~~~G~~~l~~~~~~~~iP~vAIG 165 (211)
T COG0352 121 EELGADYVGLGPIF-PTST----KPDAPPLGLEGLREIRELVNIPVVAIG 165 (211)
T ss_pred HhcCCCEEEECCcC-CCCC----CCCCCccCHHHHHHHHHhCCCCEEEEc
No 449
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=77.45 E-value=46 Score=28.61 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=91.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE--EeCCCCCC-H---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LTSDFRGD-L---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~--~t~~~~~~-~---e~l~~L~~a 205 (328)
..+++.+.++++.+.|+..+++.- .++...-+.++. .++.+.. ..|.+..+ + ..++...+.
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p-----------~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNP-----------CFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcH-----------HHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 456788888888888888888741 122222222222 2344432 22222112 2 235666777
Q ss_pred CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 206 G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
|.|.+-+.+.... .. ...++..++-+..+++...|+.+.. |+.. .-+.+++....+...++|+|++-.+
T Consensus 82 GAdevdvv~~~g~-----~~--~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTs- 151 (203)
T cd00959 82 GADEIDMVINIGA-----LK--SGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTS- 151 (203)
T ss_pred CCCEEEEeecHHH-----Hh--CCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-
Confidence 9998876442211 11 3456667777777776545776655 6666 4567889999999999999988762
Q ss_pred ccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 285 ~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
|.+. ....+++..+.+++... ..+....+|
T Consensus 152 ----TG~~---~~~at~~~v~~~~~~~~-~~v~ik~aG 181 (203)
T cd00959 152 ----TGFG---PGGATVEDVKLMKEAVG-GRVGVKAAG 181 (203)
T ss_pred ----CCCC---CCCCCHHHHHHHHHHhC-CCceEEEeC
Confidence 2221 12344555555555544 334444444
No 450
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=77.41 E-value=32 Score=32.14 Aligned_cols=138 Identities=13% Similarity=0.066 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCC--CH----HHHHHHHHcC-CcEEeechhhHHHHHhhhcCCCCCHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRG--DL----RAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVL 238 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~--~~----e~l~~L~~aG-~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i 238 (328)
.+.+.++++.+++. +++.-..++.+..+ .+ +.++.|++.+ +.++.++..+.--.-. .. .+ +.+
T Consensus 144 ~~~~~~~i~~i~~~-~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~-----ri-t~---el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEH-PEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQ-----RI-TD---ELC 213 (331)
T ss_pred HHHHHHHHHHHHhC-CCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCch-----hc-CH---HHH
Confidence 46788888888764 45543345544443 23 4456666543 4445543322100000 01 13 344
Q ss_pred HHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 239 KHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 239 ~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
+.+++ .|+.+.....++. .|..+++.+.++.+++.|+....-+..+ +. + .-..+.+..+.+...++|++
T Consensus 214 ~~L~~--~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl---~g---v--nD~~~~l~~L~~~l~~~gV~ 283 (331)
T TIGR00238 214 ELLAS--FELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLL---RG---V--NDRAQILAKLSIALFKVGII 283 (331)
T ss_pred HHHHh--cCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecceE---CC---c--CCCHHHHHHHHHHHhhcCee
Confidence 44556 6776433334455 5667888899999999998643321111 11 1 11255677788888888998
Q ss_pred eeeecc
Q 020304 318 YVASGP 323 (328)
Q Consensus 318 ~~~~g~ 323 (328)
-|+...
T Consensus 284 pyyl~~ 289 (331)
T TIGR00238 284 PYYLHY 289 (331)
T ss_pred cCeecC
Confidence 877653
No 451
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=77.16 E-value=37 Score=31.68 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=82.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC-----CCHHHHHHHHHcCCc
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-----GDLRAVETLVHSGLD 208 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~-----~~~e~l~~L~~aG~~ 208 (328)
++...-++.+.+.|+++|+..-..+..-.......+.+++++.++. ++.+.+-.++.+ .+...++.+.+.|++
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~e~G~~ 93 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQELGVD 93 (360)
T ss_pred hhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHHHhhhh
Confidence 3456778888899998875432221100001246788888888876 555543223221 256788999999999
Q ss_pred EEee----chhhHHHHHhh-hcCCCCCHHHHHHHHHHHHHhCCCC---eEEEeEEEEc--CCCHHHHHHHHHHHHhCCCC
Q 020304 209 VFAH----NIETVKRLQRI-VRDPRAGYEQSLEVLKHAKLSKKGL---ITKSSIMLGL--GESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 209 ~i~~----~~et~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~Gi---~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~ 278 (328)
.+.+ +.+....|-+. ++ -..+....-+-+..+.++.+.+ .-|.++---. |-+.+.+.+.=+++++.++.
T Consensus 94 glRlD~gfS~eei~~ms~~~lk-ieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~ 172 (360)
T COG3589 94 GLRLDYGFSGEEIAEMSKNPLK-IELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIK 172 (360)
T ss_pred heeecccCCHHHHHHHhcCCeE-EEEchhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCc
Confidence 8876 33333333221 11 0112222222333333322333 2333443222 78999999999999999998
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
...+
T Consensus 173 t~AF 176 (360)
T COG3589 173 TAAF 176 (360)
T ss_pred eEEE
Confidence 7554
No 452
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=77.06 E-value=14 Score=33.95 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=52.7
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-------cHHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 020304 122 VKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMVECLTSDFRG 194 (328)
Q Consensus 122 ~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-------~~~~l~~li~~ik~~~~~~~i~~~t~~~~~ 194 (328)
+++..+-.+.+.+++.++++++.+.|++.|.+.|...+...|. .-.-+.+.++.||+.+|++.+.+
T Consensus 49 I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iit------- 121 (330)
T COG0113 49 IPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVIT------- 121 (330)
T ss_pred cCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEe-------
Confidence 3444444455667889999999999999998887653333321 11356778999999988765532
Q ss_pred CHHHHHHHHHcCCcEEee
Q 020304 195 DLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~ 212 (328)
+--+...-++|-+.+..
T Consensus 122 -DvcLceyT~HGHcGil~ 138 (330)
T COG0113 122 -DVCLCEYTDHGHCGILD 138 (330)
T ss_pred -eecccCCcCCCcccccc
Confidence 12233344666555543
No 453
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=76.97 E-value=68 Score=30.34 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSD 191 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~ 191 (328)
++++..+.++++.+.|++.+.+.++.... .+.-.+.++.+++.. +++.+.+-.|.
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~-----~~~di~~i~~vR~~~G~~~~l~vDan~ 198 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGV-----VRRDLKACLAVREAVGPDMRLMHDGAH 198 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchh-----HHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 45666778888888999999886432211 255677888888864 56666543343
No 454
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.96 E-value=18 Score=34.32 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=86.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC-----CCHHHHHHHHHcC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-----GDLRAVETLVHSG 206 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l-~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~-----~~~e~l~~L~~aG 206 (328)
.++..+.++.+.+.|+++|+.+ -..+.- ...-.+.+.++++..++. ++.+.+-.+... .+.+.++.+++.|
T Consensus 13 ~~~~~~yi~~a~~~Gf~~iFTS-L~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFKRIFTS-LHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-E---------HHHHHHHHHHHHHHC--T-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCEEECC-CCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 3456777888889999877543 221111 111247788888888887 566654333221 2345588899999
Q ss_pred CcEEee----chhhHHHHHhh-hc--CCCCC-HHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCC
Q 020304 207 LDVFAH----NIETVKRLQRI-VR--DPRAG-YEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSID 276 (328)
Q Consensus 207 ~~~i~~----~~et~~~~~~~-~~--~~~~~-~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~ 276 (328)
++.+.+ +.+....+.+. ++ =.-.+ .++.++.+.....-+..+..+-++--=. |=+.+.+.+.-+++++.|
T Consensus 90 i~~lRlD~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~g 169 (357)
T PF05913_consen 90 IDGLRLDYGFSGEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYG 169 (357)
T ss_dssp -SEEEESSS-SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCC
Confidence 999987 22222233221 10 00012 2334444332111112233444443322 668899999999999999
Q ss_pred CCEEeeecccCC------CCCC-----cccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 277 VDILTLGQYLQP------TPLH-----LTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 277 ~~~i~i~~~l~P------Tp~~-----~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+.... |+ | .|++ .......++ +...+.+...-++-.|.+|
T Consensus 170 i~~~A---FI-~g~~~~rGPl~~GLPTlE~hR~~~p--~~aa~~L~~~~~iD~V~IG 220 (357)
T PF05913_consen 170 IKTAA---FI-PGDENKRGPLYEGLPTLEKHRNLPP--YAAALELFALGLIDDVIIG 220 (357)
T ss_dssp -EEEE---EE---SSS-BTTT-S--BSBGGGTTS-H--HHHHHHHHHTTT--EEEE-
T ss_pred CcEEE---Ee-cCCCcccCCccCCCCccHHHcCCCH--HHHHHHHHhcCCCCEEEEC
Confidence 76543 33 2 2222 112233333 3444444444448888887
No 455
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=76.83 E-value=54 Score=29.17 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=75.8
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.+.++...+.|.+.+++..-+.- .. ...-.++++.+.+.. .+.+.+ .+++.+.+.++.+.++|++++.++-
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a-~g---~~~n~~~i~~i~~~~-~~~v~v--gGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAA-FG---GGNNEMMLEEVVKLL-VVVEEL--SGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCC-CC---CcchHHHHHHHHHHC-CCCEEE--cCCCCCHHHHHHHHHcCCCEEEECc
Confidence 5677888888899998887643321 11 122345777776653 244433 4566689999999999999998875
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-------EEEc---CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-------MLGL---GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-------ivGl---gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+++. .+-..+..+...+ -+-++.+. .+.. .+|..+..+.++.+.++|+..+-+.
T Consensus 105 ~a~~~-----------p~~~~~~~~~~g~---~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~t 169 (243)
T TIGR01919 105 AALEN-----------PWWAAAVIRYGGD---IVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVT 169 (243)
T ss_pred hhhCC-----------HHHHHHHHHHccc---cEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEE
Confidence 54421 1111111111111 12233332 2222 2455677888899999999877664
No 456
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=76.81 E-value=25 Score=30.81 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhc--CCCCCHHHHHHHHHHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR--DPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~--~~~~~~~~~l~~i~~~~~ 243 (328)
.+.+.++++.+++. ++.++.+... +++.++.-++.|.+++-+.---.-..+...- .-....++..++.+.+.+
T Consensus 110 ~~~l~~~v~~L~~~--GirVSLFiD~---d~~qi~aa~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~ 184 (243)
T COG0854 110 LDKLRDAVRRLKNA--GIRVSLFIDP---DPEQIEAAAEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAE 184 (243)
T ss_pred hhhHHHHHHHHHhC--CCeEEEEeCC---CHHHHHHHHHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999987 7889887753 8899999999999998752110000000000 000134456667777777
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHH
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEA 268 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~ 268 (328)
.|+.|++ |+|-|...+...
T Consensus 185 --lGL~VnA----GHgLty~Nv~~~ 203 (243)
T COG0854 185 --LGLKVNA----GHGLTYHNVKPL 203 (243)
T ss_pred --cCceEec----CCCccccchHHH
Confidence 8888765 455555555443
No 457
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=76.74 E-value=15 Score=33.80 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+ +.++ ++.+.++++.++. .+.+++ +++ ++.+.+..+++.|+|.+..+.
T Consensus 218 leea~ea~~~gaDiI~L-----Dn~s---~e~~~~av~~~~~---~~~iea--SGG-I~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 218 LDELDQALKAGADIIML-----DNFT---TEQMREAVKRTNG---RALLEV--SGN-VTLETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---hHHHHHHHHhhcC---CeEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 67888888899987777 2233 4788888886643 345544 444 499999999999999998753
No 458
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=76.51 E-value=20 Score=34.38 Aligned_cols=143 Identities=14% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCccCCCC-CC--CCCC-------------CCchHHHHHHHHHCCCcEEEEE--eccCC----CCCCCcHH
Q 020304 110 GDTCTRGCRFCAVKTSR-NP--APPD-------------PMEPENTAKAIASWGVDYIVLT--SVDRD----DIPDGGSG 167 (328)
Q Consensus 110 t~gC~~~C~FC~~~~~~-~~--~~~~-------------~~ei~~~~~~~~~~G~~~i~l~--gg~~~----~l~~~~~~ 167 (328)
-.-|..+|.||...... .. .... -....+.++.+.+.|++.+.|+ +.++. .+.+....
T Consensus 82 ~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~ 161 (414)
T COG1625 82 AKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAE 161 (414)
T ss_pred eeecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHH
Confidence 45689999999775321 10 0111 0122466777999999987664 33321 12233456
Q ss_pred HHHHHHHHHHHhCCCcEEE-EEeCCCC-C--CHHHHHHHHHcCCcEEeec---hhhHHHHHh-hhc-CCCCCHHHHHHHH
Q 020304 168 HFARTVKAMKKQKPDIMVE-CLTSDFR-G--DLRAVETLVHSGLDVFAHN---IETVKRLQR-IVR-DPRAGYEQSLEVL 238 (328)
Q Consensus 168 ~l~~li~~ik~~~~~~~i~-~~t~~~~-~--~~e~l~~L~~aG~~~i~~~---~et~~~~~~-~~~-~~~~~~~~~l~~i 238 (328)
.+.+.++...++.-++... ++.|+.. . -++.++.|.+-|.+.+.+- ...+.+.++ .++ ...++.+++.+..
T Consensus 162 ~~le~L~~f~~~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~ 241 (414)
T COG1625 162 QLLELLRRFAERCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIV 241 (414)
T ss_pred HHHHHHHHHHHhhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHH
Confidence 7888888877764333332 3556654 1 1577888888887665442 111222222 222 1235666777777
Q ss_pred HHHHHhCCCCeEEE
Q 020304 239 KHAKLSKKGLITKS 252 (328)
Q Consensus 239 ~~~~~~~~Gi~v~~ 252 (328)
+...+.+.++.+..
T Consensus 242 re~~~E~~~~~V~g 255 (414)
T COG1625 242 REFDRELGSIRVTG 255 (414)
T ss_pred HHHHHhcCceEEeC
Confidence 76655444365443
No 459
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=76.39 E-value=53 Score=28.86 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH----hCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK----QKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~----~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
..|....+.++.+.. -++.|.+.+.+|..-...-.+...+=++.+++ ...++.++ ..++ ++.+.+..++++|
T Consensus 117 lnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~Ie--VDGG-I~~eti~~l~~aG 192 (223)
T PRK08745 117 LNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLE--IDGG-VKADNIGAIAAAG 192 (223)
T ss_pred eCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEE--EECC-CCHHHHHHHHHcC
Confidence 456555666665554 26788887777542221111222223333333 22334444 3455 4999999999999
Q ss_pred CcEEeec
Q 020304 207 LDVFAHN 213 (328)
Q Consensus 207 ~~~i~~~ 213 (328)
.|.+-.|
T Consensus 193 aDi~V~G 199 (223)
T PRK08745 193 ADTFVAG 199 (223)
T ss_pred CCEEEEC
Confidence 9998876
No 460
>PRK08185 hypothetical protein; Provisional
Probab=76.39 E-value=62 Score=29.60 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCC-CcHHHHHHHHHHHHHhCCCcEEEE--Ee-CC---C---------CCCHHHHH
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKPDIMVEC--LT-SD---F---------RGDLRAVE 200 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~-~~~~~l~~li~~ik~~~~~~~i~~--~t-~~---~---------~~~~e~l~ 200 (328)
.+.++.+.+.|++.|.+-+-+ ++. .+.+...++++..+.. ++.++. .. .+ . .-+++.+.
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~---l~~eeNi~~t~~vv~~a~~~--gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~ 155 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSL---LPYEENVALTKEVVELAHKV--GVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAE 155 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHHHHHHHHc--CCeEEEEEeeccCcccccccccccccCCCHHHHH
Confidence 456777788999999886544 331 1223334444444443 444432 11 11 1 11566666
Q ss_pred HHHHc-CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCC
Q 020304 201 TLVHS-GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 201 ~L~~a-G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~ 278 (328)
.+.+. |+|.+.+++-+..-+|..-.+++.+ ++.++.+++. .++++ ++.|= |-.+++ ++.+.++|+.
T Consensus 156 ~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~-~~iPL---VlHGgsg~~~e~----~~~ai~~GI~ 223 (283)
T PRK08185 156 DFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINER-VDIPL---VLHGGSANPDAE----IAESVQLGVG 223 (283)
T ss_pred HHHHhhCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHh-hCCCE---EEECCCCCCHHH----HHHHHHCCCe
Confidence 66665 9999999888777776432224455 4444444441 35554 45554 555554 4666789999
Q ss_pred EEeeeccc
Q 020304 279 ILTLGQYL 286 (328)
Q Consensus 279 ~i~i~~~l 286 (328)
.++++.-+
T Consensus 224 KiNi~T~l 231 (283)
T PRK08185 224 KINISSDM 231 (283)
T ss_pred EEEeChHH
Confidence 98885433
No 461
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=76.34 E-value=52 Score=28.71 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=54.5
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+.+....+.|..++..--|.-++....+.+.+.++.+.++.......+.. ... .+.+.+-.+..+|++.+.++.+.+
T Consensus 113 ~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla--AS~-r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 113 AQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA--ASV-RHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred HHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE--ecc-CCHHHHHHHHHcCCCEEEcCHHHH
Confidence 34444556788877443333333343456778888787777655566543 233 377888888899999999999999
Q ss_pred HHHHh
Q 020304 218 KRLQR 222 (328)
Q Consensus 218 ~~~~~ 222 (328)
+++..
T Consensus 190 ~~l~~ 194 (213)
T TIGR00875 190 QQLFN 194 (213)
T ss_pred HHHHc
Confidence 88753
No 462
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=76.18 E-value=19 Score=31.67 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
...+.+.++++.+.|+.++.++..+.+-... +++ + ++++.+++.. ++.+. ..++..+.+-+..|++.|++.+.+
T Consensus 146 ~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~-G~d-~-~~~~~l~~~~-~~~vi--asGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 146 GIDLEEFAKRLEELGAGEIILTDIDRDGTMQ-GPD-L-ELLKQLAEAV-NIPVI--ASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEHHHHHHHHHHTT-SEEEEEETTTTTTSS-S---H-HHHHHHHHHH-SSEEE--EESS--SHHHHHHHHHTTECEEEE
T ss_pred CcCHHHHHHHHHhcCCcEEEEeeccccCCcC-CCC-H-HHHHHHHHHc-CCCEE--EecCCCCHHHHHHHHHCCCcEEEE
Confidence 3567889999999999999999866543322 122 2 6677776654 56664 356666889999999999988877
Q ss_pred c
Q 020304 213 N 213 (328)
Q Consensus 213 ~ 213 (328)
+
T Consensus 220 g 220 (229)
T PF00977_consen 220 G 220 (229)
T ss_dssp S
T ss_pred e
Confidence 5
No 463
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=76.17 E-value=46 Score=30.93 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHHcCCcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 198 AVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.++.+.+.|++.+-+|.---.. ..+...+. -.+.+...+.++.+++. .+++++.-+-.|..++.++..+.++.+.+
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 3555667889988887654332 22211100 12567777777777652 35566655556765555678888999999
Q ss_pred CCCCEEeeec
Q 020304 275 IDVDILTLGQ 284 (328)
Q Consensus 275 l~~~~i~i~~ 284 (328)
.|++.+.++.
T Consensus 161 ~G~d~i~vh~ 170 (321)
T PRK10415 161 CGIQALTIHG 170 (321)
T ss_pred hCCCEEEEec
Confidence 9999998853
No 464
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=76.05 E-value=21 Score=32.33 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-|.+ +.++ ++.+.+.++.+... ..+.+++ +++ ++.+.+...++.|+|.++.|.
T Consensus 198 le~~~eAl~agaDiImL-----DNm~---~e~~~~av~~l~~~-~~~~lEa--SGg-It~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 198 LEEAEEALEAGADIIML-----DNMS---PEELKEAVKLLGLA-GRALLEA--SGG-ITLENIREYAETGVDVISVGA 263 (280)
T ss_pred HHHHHHHHHcCCCEEEe-----cCCC---HHHHHHHHHHhccC-CceEEEE--eCC-CCHHHHHHHhhcCCCEEEeCc
Confidence 57888888899987777 3354 58888888876322 3455554 444 499999999999999998754
No 465
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=75.99 E-value=65 Score=29.62 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHHCCCcEEEEEeccCCCCCC-CcHHHHHHHHHHHHHhCCCcEEEEEeCC--CCCC---HHHHHHHHHcCCcEEeechh
Q 020304 142 AIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKPDIMVECLTSD--FRGD---LRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~-~~~~~l~~li~~ik~~~~~~~i~~~t~~--~~~~---~e~l~~L~~aG~~~i~~~~e 215 (328)
-+...|++.|-|- .+.+...+ ...+.+.++++.+++.+|++.+....+. .-++ -++++..+++|+.--.+|+-
T Consensus 99 ~i~~y~~dgiDfD-iE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiM 177 (294)
T cd06543 99 VIDAYGLTHLDFD-IEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIM 177 (294)
T ss_pred HHHHhCCCeEEEe-ccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeee
Confidence 3456788877552 11111222 1247888999999998888887643332 1124 26899999999655444443
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHHHH----HhCCCC-------eEEEeEEEEc---C-C--CHHHHHHHHHHHHhCCCC
Q 020304 216 TVKRLQRIVRDPRAGYEQSLEVLKHAK----LSKKGL-------ITKSSIMLGL---G-E--SDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 216 t~~~~~~~~~~~~~~~~~~l~~i~~~~----~~~~Gi-------~v~~~~ivGl---g-E--t~e~~~~~l~~l~~l~~~ 278 (328)
+.+ ++... +...-.+..+.+.+.++ ..++++ .+.++-|+|. + | |.+|...+..+.++-|+.
T Consensus 178 tmD-yg~~~-~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~~~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~ 255 (294)
T cd06543 178 TMD-YGSSA-GSQDMGAAAISAAESLHDQLKDLYPKLSDAELWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLG 255 (294)
T ss_pred eec-CCCCC-CcccHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCC
Confidence 332 11100 00111233333333332 222221 2566779998 2 2 789999999999999988
Q ss_pred EEeeecccC
Q 020304 279 ILTLGQYLQ 287 (328)
Q Consensus 279 ~i~i~~~l~ 287 (328)
.+++=.+-+
T Consensus 256 ~~s~Ws~~R 264 (294)
T cd06543 256 RLSMWSLNR 264 (294)
T ss_pred eEeeeeccC
Confidence 776643333
No 466
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=75.99 E-value=34 Score=31.30 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++..+.++.+.+.|++-+++.++.. +.+.+.++.+.+...+|++.+.+..... ..-.++.|.++|++++..+
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~~------~~~ei~~~~~~~~~~~p~~pl~~~~~~~--~~~~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRKK------DPDEILEFARRFRNHYPRTPLVIVPTSY--YTTPTDEFRDAGISVVIYA 240 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCC------CHHHHHHHHHHhhhhCCCCCEEEecCCC--CCCCHHHHHHcCCCEEEEh
Confidence 3455666777888888887753221 1477888888887766666654322111 1124788999999999887
Q ss_pred hhhHH
Q 020304 214 IETVK 218 (328)
Q Consensus 214 ~et~~ 218 (328)
...+.
T Consensus 241 ~~~~~ 245 (285)
T TIGR02320 241 NHLLR 245 (285)
T ss_pred HHHHH
Confidence 65443
No 467
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=75.92 E-value=54 Score=30.40 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCcEEeechhhHH-HHHhhhcC--CCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEEcCCCHHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVK-RLQRIVRD--PRAGYEQSLEVLKHAKLSKK-GLITKSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~-~~~~~~~~--~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~ivGlgEt~e~~~~~l~~l 272 (328)
+.++.+.++|++.+-+|.--.. ...+...+ --.+.+...+.++.+++..+ ++++++-+=+|. ++.++..+.++.+
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-~~~~~~~~~a~~l 157 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-DSGERKFEIADAV 157 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-CCchHHHHHHHHH
Confidence 4456777889998887654422 23221110 01356677777777776332 466665554564 3334577899999
Q ss_pred HhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 273 RSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 273 ~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+.|++.+.++.. |.... .... +..++.++++....++..+..|
T Consensus 158 ~~~Gvd~i~Vh~R---t~~~~-y~g~--~~~~~~i~~ik~~~~iPVi~nG 201 (312)
T PRK10550 158 QQAGATELVVHGR---TKEDG-YRAE--HINWQAIGEIRQRLTIPVIANG 201 (312)
T ss_pred HhcCCCEEEECCC---CCccC-CCCC--cccHHHHHHHHhhcCCcEEEeC
Confidence 9999999998532 32210 1111 1123444555555566666655
No 468
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=75.80 E-value=17 Score=33.16 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCC------CcHHHHHHHHHHHHHhCCC-cEEE--EEeC--CCCCC-H---
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPD-IMVE--CLTS--DFRGD-L--- 196 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~------~~~~~l~~li~~ik~~~~~-~~i~--~~t~--~~~~~-~--- 196 (328)
+..++...+..+...|++.|.+.+|+++...+ .+..+..++++.+++...+ +.+. .+.. ....+ +
T Consensus 83 n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~ 162 (287)
T PF02219_consen 83 NREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAEL 162 (287)
T ss_dssp BHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHH
Confidence 34577788888899999999888888654422 1234578899988853322 4443 3221 11112 2
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC--eEEEeE
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL--ITKSSI 254 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi--~v~~~~ 254 (328)
+.+++=.+||.+.+.- . .-++.+.+.+.++.+++ .|+ ++..++
T Consensus 163 ~~l~~Ki~aGA~f~iT---------Q----~~fd~~~~~~~~~~~~~--~g~~~pIi~GI 207 (287)
T PF02219_consen 163 KRLKKKIDAGADFIIT---------Q----PFFDAEAFERFLDRLRE--AGIDVPIIPGI 207 (287)
T ss_dssp HHHHHHHHTTESEEEE---------E----E-SSHHHHHHHHHHHHH--TTHTSEEEEEE
T ss_pred HHHHHHHHCCCCEEec---------c----ccCCHHHHHHHHHHHHH--cCCCCcEEEEE
Confidence 2333444678775431 1 13566667777777777 776 444443
No 469
>PRK03739 2-isopropylmalate synthase; Validated
Probab=75.51 E-value=93 Score=31.39 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=72.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEeCCCCCC-HHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~---~~~~i~~~t~~~~~~-~e~l~~L~~aG 206 (328)
.+.++-.++++.+.+.|+++|-+. - |...+ .=.+.++.|.+.. ++..+..++.....| +..++.++.++
T Consensus 49 ~s~~~Ki~ia~~L~~~GV~~IE~G--f-P~~s~----~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~ 121 (552)
T PRK03739 49 MSPERKLRMFDLLVKIGFKEIEVG--F-PSASQ----TDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAK 121 (552)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE--C-CCcCh----HHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCC
Confidence 455677889999999999988764 2 44553 2245666664442 356666555442212 23344444455
Q ss_pred CcEEeechhhHHHH-HhhhcCCCCCHHH----HHHHHHHHHHhCCCCeE-E--EeEEEEcCC----C-HHHHHHHHHHHH
Q 020304 207 LDVFAHNIETVKRL-QRIVRDPRAGYEQ----SLEVLKHAKLSKKGLIT-K--SSIMLGLGE----S-DDDLKEAMADLR 273 (328)
Q Consensus 207 ~~~i~~~~et~~~~-~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v-~--~~~ivGlgE----t-~e~~~~~l~~l~ 273 (328)
...+.+.+-+.+.. ...+ +.+.++ ..++++.+++ .|... . ..+.++ +| + .+-+.+.++.+.
T Consensus 122 ~~~v~i~~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~a~~--~~~~~~~~~~~v~f~-~EDasR~d~~~l~~~~~~a~ 195 (552)
T PRK03739 122 RAIVHLYNSTSPLQRRVVF---GKDRDGIKAIAVDGARLVKE--LAAKYPETEWRFEYS-PESFTGTELDFALEVCDAVI 195 (552)
T ss_pred CCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--hcccccCceeEEEEe-cccCCCCCHHHHHHHHHHHH
Confidence 45676665555542 2222 234554 5566667777 66431 1 233444 44 4 455566666665
Q ss_pred h
Q 020304 274 S 274 (328)
Q Consensus 274 ~ 274 (328)
+
T Consensus 196 ~ 196 (552)
T PRK03739 196 D 196 (552)
T ss_pred H
Confidence 4
No 470
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.36 E-value=19 Score=33.07 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-+.+ +.+. ++.+.+.++.+++ .+.+++ +++ ++.+.+...++.|+|.++.+.
T Consensus 207 leea~~a~~agaDiImL-----Dnms---pe~l~~av~~~~~---~~~lea--SGG-I~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 207 LAAAEEAAAAGADIIML-----DNMS---LEQIEQAITLIAG---RSRIEC--SGN-IDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhcC---ceEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 57788888899987777 2343 5888888886654 344443 444 499999999999999998764
No 471
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=75.15 E-value=26 Score=32.61 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=74.7
Q ss_pred HHHHHHHHHCC--CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.+..+.+.| .+.+++-..+. ......+.++.+++.+|...+.. +...+.+.++.|.++|++.+.+++
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg------~s~~~~~~i~~i~~~~p~~~vi~---GnV~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHG------HSNSVINMIKHIKTHLPDSFVIA---GNVGTPEAVRELENAGADATKVGI 166 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccC------chHHHHHHHHHHHHhCCCCEEEE---ecCCCHHHHHHHHHcCcCEEEECC
Confidence 45666777777 46666643332 24789999999999887654432 222489999999999999988753
Q ss_pred hhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-...- ..+...+.++. .-.+.++..+++. ..++ +++- -.+-.|+.+.+ .+|.+.+.+...+
T Consensus 167 G~G~~~~tr~~~g~g~~-~~~l~ai~ev~~a-~~~p-----VIadGGIr~~~Di~KAL----a~GAd~Vmig~~~ 230 (321)
T TIGR01306 167 GPGKVCITKIKTGFGTG-GWQLAALRWCAKA-ARKP-----IIADGGIRTHGDIAKSI----RFGASMVMIGSLF 230 (321)
T ss_pred CCCccccceeeeccCCC-chHHHHHHHHHHh-cCCe-----EEEECCcCcHHHHHHHH----HcCCCEEeechhh
Confidence 22111 01111111221 1124556655552 2333 2222 23445554443 3699988886555
No 472
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.04 E-value=28 Score=30.81 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
...++.+.++++.+.|+.++.+|..+.+-...+ .=.++++.+.+. .++.+.+ .++..+.+.+..+.++|++.+.
T Consensus 146 ~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G---~~~~li~~l~~~-~~ipvi~--~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 146 TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG---PNFELTGQLVKA-TTIPVIA--SGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCc---cCHHHHHHHHHh-CCCCEEE--eCCCCCHHHHHHHHHcCCCEEE
Confidence 344568889999999999999987654322211 112355555554 3455543 4555688999999999999998
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
++
T Consensus 220 vG 221 (234)
T PRK13587 220 IG 221 (234)
T ss_pred Eh
Confidence 85
No 473
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=75.03 E-value=51 Score=30.48 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=48.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCC-CCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHH-HcCCcEEee
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSGLDVFAH 212 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~-~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~-~aG~~~i~~ 212 (328)
+..+.++.+.+.|+..+.+.+.... .+.. ....+.++.+++.. ++.+ ..++.+.+.+.+..+. ..|+|.+.+
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~~i~~i~~~~-~ipv--i~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSG---EANWDIIARVKQAV-RIPV--IGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCC---chhHHHHHHHHHcC-CCcE--EEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 3567778888899999988764322 1221 23457788888764 4554 3466666766665555 688999987
Q ss_pred c
Q 020304 213 N 213 (328)
Q Consensus 213 ~ 213 (328)
+
T Consensus 222 g 222 (319)
T TIGR00737 222 G 222 (319)
T ss_pred C
Confidence 4
No 474
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.96 E-value=20 Score=32.64 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+ ++ ++ ++.+.++++.++ +.+.+.+ .++ ++.+.+..++++|+|.+..+.
T Consensus 199 leea~eA~~~gaD~I~L--D~---~~---~e~l~~~v~~~~---~~i~leA--sGG-It~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 199 LDELRQALAAGADIVML--DE---LS---LDDMREAVRLTA---GRAKLEA--SGG-INESTLRVIAETGVDYISIGA 262 (277)
T ss_pred HHHHHHHHHcCCCEEEE--CC---CC---HHHHHHHHHHhC---CCCcEEE--ECC-CCHHHHHHHHHcCCCEEEECh
Confidence 56777888899998877 12 33 577777776553 3555554 344 389999999999999998864
No 475
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.85 E-value=69 Score=29.80 Aligned_cols=122 Identities=10% Similarity=0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMAD 271 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~ 271 (328)
+.++.+.++|++.+-+|.---.. ..+...+ --.+++...+.++.+++. .+++|++-+=+|. .++.++..+.++.
T Consensus 71 ~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~~~PVsvKiR~g~~~~~~~~~~~~~~~~ 149 (318)
T TIGR00742 71 KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-VNIPVTVKHRIGIDPLDSYEFLCDFVEI 149 (318)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-hCCCeEEEEecCCCCcchHHHHHHHHHH
Confidence 45666677888888876643222 2111000 013567777777777652 3677777777777 3455778888999
Q ss_pred HHhCCCCEEeeecccCCCC-CC-c--ccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 272 LRSIDVDILTLGQYLQPTP-LH-L--TVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 272 l~~l~~~~i~i~~~l~PTp-~~-~--~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+.+.|++.+.++.- |. .. . .......+..++.++++.... .+..+..|
T Consensus 150 l~~~G~~~itvHgR---t~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NG 202 (318)
T TIGR00742 150 VSGKGCQNFIVHAR---KAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEING 202 (318)
T ss_pred HHHcCCCEEEEeCC---chhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEEC
Confidence 99999999888532 32 11 0 011123344566666666665 56666665
No 476
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=74.82 E-value=62 Score=28.88 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=83.8
Q ss_pred CCCchHHHHHHHHHC-CCcEEEE--EeccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 132 DPMEPENTAKAIASW-GVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~-G~~~i~l--~gg~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
+.+|....++...+. |.+.|.+ .+.....+ ++..+++++.+.. ..++.+.-+.++ |....++|.++|+
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Ll-----pd~~~tv~aa~~L~~~Gf~vlpyc~d---d~~~ar~l~~~G~ 145 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVIGDDKTLL-----PDPIETLKAAEILVKEGFTVLPYCTD---DPVLAKRLEDAGC 145 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEecCccccc-----cCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHcCC
Confidence 456666666666554 4455544 33232223 3344555544443 136666534444 7899999999999
Q ss_pred cEEee-chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 208 DVFAH-NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 208 ~~i~~-~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
+.+.- + ..+.. +.+....+.++ .+++. .++. +|++= -.|.+|..+.+ ++|++-+-++.-
T Consensus 146 ~~vmPlg----~pIGs---g~Gi~~~~~I~---~I~e~-~~vp----VI~egGI~tpeda~~Am----elGAdgVlV~SA 206 (248)
T cd04728 146 AAVMPLG----SPIGS---GQGLLNPYNLR---IIIER-ADVP----VIVDAGIGTPSDAAQAM----ELGADAVLLNTA 206 (248)
T ss_pred CEeCCCC----cCCCC---CCCCCCHHHHH---HHHHh-CCCc----EEEeCCCCCHHHHHHHH----HcCCCEEEEChH
Confidence 98832 1 01111 11222244444 44441 3443 56655 46788776655 499998888533
Q ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccc
Q 020304 286 LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPL 324 (328)
Q Consensus 286 l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~ 324 (328)
+ + .--.|..+.+.-..+.+.|..-+.+|.+
T Consensus 207 I--t-------~a~dP~~ma~af~~Av~aGr~a~~ag~~ 236 (248)
T cd04728 207 I--A-------KAKDPVAMARAFKLAVEAGRLAYLAGRM 236 (248)
T ss_pred h--c-------CCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 1 1112444444445555666666666644
No 477
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.43 E-value=18 Score=31.63 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..+..+.++.+.+.|+.++.+++........ + .-.++++.+++.. ++.+. .+++..+.+.+..+.+.|++.+.
T Consensus 144 ~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~-g--~~~~~i~~i~~~~-~ipvi--~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 144 SEVSLEELAKRFEELGVKAIIYTDISRDGTLS-G--PNFELYKELAAAT-GIPVI--ASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEeecCCCccC-C--CCHHHHHHHHHhc-CCCEE--EecCCCCHHHHHHHHHCCCCEEE
Confidence 34566788888999999999888654322211 1 1246677777653 44543 35666678878888889999998
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
++
T Consensus 218 vg 219 (234)
T cd04732 218 VG 219 (234)
T ss_pred Ee
Confidence 85
No 478
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=74.37 E-value=70 Score=29.27 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHCCCcEEEEEecc---CCCCCC---CcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCC---HHHHHHHHHcCCcE
Q 020304 140 AKAIASWGVDYIVLTSVD---RDDIPD---GGSGHFARTVKAMKKQKPDIMVECLT-SDFRGD---LRAVETLVHSGLDV 209 (328)
Q Consensus 140 ~~~~~~~G~~~i~l~gg~---~~~l~~---~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~---~e~l~~L~~aG~~~ 209 (328)
++.+.+.|++-+.++|.. .--++| -..+.+.+.++.|.+.. ++.+.+-. +++-.. ...++.+.++|+..
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~d~GyG~~~~v~~tv~~~~~aG~ag 104 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDADTGFGEAFNVARTVREMEDAGAAA 104 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 445567899999887721 011223 13566666677766653 45554322 222211 24589999999999
Q ss_pred EeechhhHHHHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCC-----CHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGE-----SDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgE-----t~e~~~~~l~~l~~l~~~~i~i 282 (328)
+++-.++..+..-...+ .-.+.++..+.|+.+++...+ .++++ .=.| ..++..+=.+...+.|.|.+.+
T Consensus 105 i~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~----~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi 180 (285)
T TIGR02317 105 VHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD----EDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP 180 (285)
T ss_pred EEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC----CCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 99976665432211111 124678888888888773323 22222 1122 2455555566667789998876
No 479
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=74.34 E-value=24 Score=32.88 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=67.4
Q ss_pred eCCCCCCHHHHHHHHHcCCcEEee----chhhHHHHH-hhhcCCC------CCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 189 TSDFRGDLRAVETLVHSGLDVFAH----NIETVKRLQ-RIVRDPR------AGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 189 t~~~~~~~e~l~~L~~aG~~~i~~----~~et~~~~~-~~~~~~~------~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
|.+...+++++++|++-|+....+ |+-|+.+.. ..+.... .=.++..++++.+|+ .|-. |+.
T Consensus 182 TAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~MH~E~~~v~~eta~~i~~~k~--~GgR-----Iia 254 (348)
T COG0809 182 TAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHKMHSEYYEVPQETADAINAAKA--RGGR-----IIA 254 (348)
T ss_pred cCCCCCCHHHHHHHHHCCceEEEEEEEecccccccceeccccccccchhheecCHHHHHHHHHHHH--cCCe-----EEE
Confidence 334445899999999999887653 555554422 1111011 123678889999988 7766 333
Q ss_pred cCCCHHHHHHHHHHHHhCCC----CEEeeecccC----C---CCCCcc-------cCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 258 LGESDDDLKEAMADLRSIDV----DILTLGQYLQ----P---TPLHLT-------VKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 258 lgEt~e~~~~~l~~l~~l~~----~~i~i~~~l~----P---Tp~~~~-------~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.|-|.---.+++..-..+.+ ..+.+++--+ . |.++.+ +.....-+.+-..-+.|.+.+++++
T Consensus 255 VGTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy~~~~vD~LiTNFHlPkSTLlMLVsAFaG~~~~~~aY~~Ai~~~YRFf 334 (348)
T COG0809 255 VGTTSVRTLESAAREAGLKAFSGWTDIFIYPGYRFKVVDALITNFHLPKSTLLMLVSAFAGREELLAAYKHAIEQKYRFF 334 (348)
T ss_pred EcchhHHHHHHHhcccCcCcCcCcccEEEcCCCcceeeeeeeecCcCCccHHHHHHHHhcCHHHHHHHHHHHHHhCceee
Confidence 44443333333333333332 2222221110 0 444422 1222333444445567888899999
Q ss_pred eec
Q 020304 320 ASG 322 (328)
Q Consensus 320 ~~g 322 (328)
..|
T Consensus 335 SyG 337 (348)
T COG0809 335 SYG 337 (348)
T ss_pred ecc
Confidence 887
No 480
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=74.31 E-value=59 Score=28.34 Aligned_cols=161 Identities=11% Similarity=0.105 Sum_probs=94.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe--CCCCCC----HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGD----LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t--~~~~~~----~e~l~~L~~ 204 (328)
.+.+++.+.++++.+.|+..+++. +.+..+.+..-+. .++.+.... |-+..+ -...+...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~------------p~~v~~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~E~~~Av~ 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN------------PSYVPLAKELLKG-TEVRICTVVGFPLGASTTDVKLYETKEAIK 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC------------HHHHHHHHHHcCC-CCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 455678889999999999888872 2233333332221 245554322 211112 134566677
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+|.+.+-+-+.. ..+. ..+++...+-++.+++...|+.+.. |+-. .-+.+++....+...+.|+|++-.+
T Consensus 82 ~GAdEiDvv~n~-----g~l~--~g~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 82 YGADEVDMVINI-----GALK--DGNEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred cCCCEEEeecch-----Hhhh--CCcHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 898887664321 1121 4567777777887777445776665 4434 3567889999999999999987662
Q ss_pred cccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 284 QYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 284 ~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
|.+. ....+++....+++.... .+...++|
T Consensus 153 -----TGf~---~~gat~~dv~~m~~~v~~-~v~IKaaG 182 (211)
T TIGR00126 153 -----TGFG---AGGATVEDVRLMRNTVGD-TIGVKASG 182 (211)
T ss_pred -----CCCC---CCCCCHHHHHHHHHHhcc-CCeEEEeC
Confidence 3321 123455555555544432 34444444
No 481
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=74.15 E-value=53 Score=29.10 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
.++.+|+.+....+.+.|-.-+.+.+|++.-| -.+.|=++++.+.
T Consensus 58 ~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiY-----gA~~EQm~~L~~~ 102 (254)
T COG2875 58 SLTLEEIIDLMVDAVREGKDVVRLHSGDPSIY-----GALAEQMRELEAL 102 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeecCChhHH-----HHHHHHHHHHHHc
Confidence 45667888888888888888888999997554 3455556666665
No 482
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=74.13 E-value=38 Score=32.43 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCC-CCCC--HHHHHHHHHcCCcEEeechhhHHHH--HhhhcCCCCCHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSD-FRGD--LRAVETLVHSGLDVFAHNIETVKRL--QRIVRDPRAGYEQSLEVLK 239 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~-~~~~--~e~l~~L~~aG~~~i~~~~et~~~~--~~~~~~~~~~~~~~l~~i~ 239 (328)
+.+.+.+.++.+++.+|+..+.+...+ ...+ .+.++.+.++|.|.+-+|+..-+-. +.....-..+.+...+.++
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 367777778888777666555443322 2111 3678888899999998877443211 1100001345666666667
Q ss_pred HHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 240 HAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 240 ~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.+++. ..++ +++=+.-...++.+.++.+.+.|++-+.+.+.+
T Consensus 176 ~Vk~~-~~iP----v~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 176 WINAK-ATVP----VWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHh-hcCc----eEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 77661 1222 455454455678899999999999987765544
No 483
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.05 E-value=78 Score=29.61 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCcEEeechhhHHH-HHhhhcCC--CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETVKR-LQRIVRDP--RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMAD 271 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~--~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~ 271 (328)
+.++.++++|+|.+-+|.-.-.. ..+...+. -.+.+...+.++.+++. .++.+.+-+=+|. .+|.++..+.+..
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-v~~pVsvKiR~g~~~~~t~~~~~~~~~~ 159 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-VSIPVTVKHRIGIDDQDSYEFLCDFVDT 159 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-cCCceEEEEEeeeCCCcCHHHHHHHHHH
Confidence 55677788899998876644222 22110000 12456666777777652 3566666555676 3567788888999
Q ss_pred HHhCCCCEEeeecccCCCC-C--Cc-ccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 272 LRSIDVDILTLGQYLQPTP-L--HL-TVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 272 l~~l~~~~i~i~~~l~PTp-~--~~-~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+.+.|++.+.++.- |. . .. .....+.+..++.++++.... .+..+..|
T Consensus 160 l~~aG~d~i~vh~R---t~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nG 212 (333)
T PRK11815 160 VAEAGCDTFIVHAR---KAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEING 212 (333)
T ss_pred HHHhCCCEEEEcCC---chhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEEC
Confidence 99999999888421 21 0 00 001122233355555555554 56666665
No 484
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=74.02 E-value=14 Score=33.03 Aligned_cols=14 Identities=0% Similarity=-0.069 Sum_probs=6.4
Q ss_pred HHHHHHHcCCcEEe
Q 020304 198 AVETLVHSGLDVFA 211 (328)
Q Consensus 198 ~l~~L~~aG~~~i~ 211 (328)
+.+.+.++|+....
T Consensus 52 l~~~~~~~gl~v~s 65 (275)
T PRK09856 52 IKALAQTYQMPIIG 65 (275)
T ss_pred HHHHHHHcCCeEEE
Confidence 33344455554433
No 485
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.98 E-value=21 Score=32.64 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++-|.+ +.++ ++.+.+.++.+++. ..+++ +++ ++.+.+...+..|+|.++.+.
T Consensus 203 lee~~ea~~~gaDiImL-----Dn~s---~e~l~~av~~~~~~---~~lea--SGg-I~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 203 LDQIEPVLAAGVDTIML-----DNFS---LDDLREGVELVDGR---AIVEA--SGN-VNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred HHHHHHHHhcCCCEEEE-----CCCC---HHHHHHHHHHhCCC---eEEEE--ECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 57777778889987777 2344 58888888877643 34443 444 499999999999999998753
No 486
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=73.93 E-value=43 Score=26.74 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHH----HHHHHcCCcEE
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAV----ETLVHSGLDVF 210 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l----~~L~~aG~~~i 210 (328)
.++.++.+.+.++.-+.+++-....+ +.+.++++.+++... ++.+.+..+... .++.. ++|+++|++.+
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~-----~~~~~~~~~l~~~gl~~v~vivGG~~~i-~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGE-----IDCKGLREKCDEAGLKDILLYVGGNLVV-GKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCH-----HHHHHHHHHHHHCCCCCCeEEEECCCCC-ChhhhHHHHHHHHHcCCCEE
Q ss_pred e
Q 020304 211 A 211 (328)
Q Consensus 211 ~ 211 (328)
.
T Consensus 113 f 113 (128)
T cd02072 113 F 113 (128)
T ss_pred E
No 487
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=73.86 E-value=52 Score=28.79 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=68.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh--CCCcEEEEEeC--CC----CCCHHHHH----
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPDIMVECLTS--DF----RGDLRAVE---- 200 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~--~~~~~i~~~t~--~~----~~~~e~l~---- 200 (328)
.......++++.+.|+..+.++--... .. .+...+.++.+++. ..++.+.+... +. .++++.+.
T Consensus 75 ~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~---~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 75 DKVLVASVEDAVRLGADAVGVTVYVGS-EE---EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred chhhhcCHHHHHHCCCCEEEEEEecCC-ch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHH
Confidence 344456678888999998855422211 11 23444444444431 11444322111 00 02334433
Q ss_pred HHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-c-CCCHHHHHHHHHHHHhCCCC
Q 020304 201 TLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-L-GESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 201 ~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-l-gEt~e~~~~~l~~l~~l~~~ 278 (328)
...++|.|.+..+.. . + ++.++.+.+. .++++ ++.| . ..|.+++.+.+..+.+.|++
T Consensus 151 ~a~~~GaD~Ik~~~~------------~-~----~~~~~~i~~~-~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 151 IGAELGADIVKTKYT------------G-D----AESFKEVVEG-CPVPV---VIAGGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHHHHCCCEEEecCC------------C-C----HHHHHHHHhc-CCCCE---EEeCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 366778888776421 1 2 2333433331 33443 3444 3 36889999999999999999
Q ss_pred EEeeecc
Q 020304 279 ILTLGQY 285 (328)
Q Consensus 279 ~i~i~~~ 285 (328)
-+.+...
T Consensus 210 gv~vg~~ 216 (235)
T cd00958 210 GVAVGRN 216 (235)
T ss_pred EEEechh
Confidence 8776533
No 488
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=73.83 E-value=32 Score=29.83 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=76.9
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE----EeCC---CC-CCHHHHHHHHHcCC
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC----LTSD---FR-GDLRAVETLVHSGL 207 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~----~t~~---~~-~~~e~l~~L~~aG~ 207 (328)
+...+.+..+.|...+.+.|.+ . ++++++.. ++.+.- -.++ ++ -+-+.++.|.++|+
T Consensus 35 v~~mA~Aa~~gGAvgiR~~gv~----------d----Ikai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga 99 (229)
T COG3010 35 VAAMALAAEQGGAVGIRIEGVE----------D----IKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGA 99 (229)
T ss_pred HHHHHHHHHhCCcceEeecchh----------h----HHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHHHHHHCCC
Confidence 3567777778888777775432 2 33344332 222211 0011 11 14588999999999
Q ss_pred cEEeech------h-hHHHHHhhhcCCC-------CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHH---HHH
Q 020304 208 DVFAHNI------E-TVKRLQRIVRDPR-------AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLK---EAM 269 (328)
Q Consensus 208 ~~i~~~~------e-t~~~~~~~~~~~~-------~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~---~~l 269 (328)
+-+.++. . +++++.+..+.++ .++++.+.+ ++ .|+.+..+.+.|+ +++..... +++
T Consensus 100 ~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a----~~--~G~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 100 DIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNA----HK--LGFDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred cEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHH----HH--cCCcEEecccccccCCCCCCCCCcHHHH
Confidence 9998732 1 4444322122111 245555544 44 7777666667777 54432222 334
Q ss_pred HHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 270 ADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 270 ~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
+.+.+.|...+.=..| -+|+. .+.+.++|..-|.+|.
T Consensus 174 k~l~~~~~~vIAEGr~-------------~tP~~----Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 174 KQLSDAGCRVIAEGRY-------------NTPEQ----AKKAIEIGADAVVVGS 210 (229)
T ss_pred HHHHhCCCeEEeeCCC-------------CCHHH----HHHHHHhCCeEEEECc
Confidence 4444444433322211 22322 3456677777777764
No 489
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.75 E-value=62 Score=28.35 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC----CCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK----PDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~----~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
..|....+.++.+... +..+.+.+.+|..-.....+.-.+-++.+++.. .++.+.+ .++ ++++.+..+.++|
T Consensus 113 lnP~Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v--dGG-I~~eni~~l~~aG 188 (220)
T PRK08883 113 LNPATPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI--DGG-VKVDNIREIAEAG 188 (220)
T ss_pred eCCCCCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE--ECC-CCHHHHHHHHHcC
Confidence 3455555566655442 567777776654222111233333444444332 2344443 444 4899999999999
Q ss_pred CcEEeec
Q 020304 207 LDVFAHN 213 (328)
Q Consensus 207 ~~~i~~~ 213 (328)
.|.+.++
T Consensus 189 Ad~vVvG 195 (220)
T PRK08883 189 ADMFVAG 195 (220)
T ss_pred CCEEEEe
Confidence 9999886
No 490
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=73.55 E-value=70 Score=28.91 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=62.4
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE-Eeech
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV-FAHNI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~-i~~~~ 214 (328)
+.+-++.+++.|++.+.+ ++++ .+.-.++.+..+++ ++....+.+... +++.++++.++.=.. +.++.
T Consensus 111 ie~F~~~~~~~GvdGliv-----pDLP---~ee~~~~~~~~~~~--gi~~I~lvaPtt-~~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLV-----PDLP---PEESDELLKAAEKH--GIDPIFLVAPTT-PDERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred HHHHHHHHHHcCCCEEEe-----CCCC---hHHHHHHHHHHHHc--CCcEEEEeCCCC-CHHHHHHHHHhCCCcEEEEec
Confidence 344567778889988877 4565 35555666666655 555444444433 678888888876333 33332
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHH
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMA 270 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~ 270 (328)
....-.. ........+.++++|+. .+.+ +.+|+| -+.+++.+...
T Consensus 180 ~GvTG~~------~~~~~~~~~~v~~vr~~-~~~P----v~vGFGIs~~e~~~~v~~ 225 (265)
T COG0159 180 MGVTGAR------NPVSADVKELVKRVRKY-TDVP----VLVGFGISSPEQAAQVAE 225 (265)
T ss_pred ccccCCC------cccchhHHHHHHHHHHh-cCCC----eEEecCcCCHHHHHHHHH
Confidence 1111011 11122355666666662 2444 688994 55665554443
No 491
>PRK12999 pyruvate carboxylase; Reviewed
Probab=73.40 E-value=95 Score=34.33 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=51.1
Q ss_pred CCCCCchHHH-HHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE-EEeCC------CCCC----HH
Q 020304 130 PPDPMEPENT-AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE-CLTSD------FRGD----LR 197 (328)
Q Consensus 130 ~~~~~ei~~~-~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~-~~t~~------~~~~----~e 197 (328)
..+|+.+.+. ++.+.+.|++-+.+.. .+.+ .+.+...++.+++......+. +++.+ ...+ -+
T Consensus 622 ~~yp~~v~~~~i~~a~~~Gid~~rifd----~lnd--~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~ 695 (1146)
T PRK12999 622 TNYPDNVVRAFVREAAAAGIDVFRIFD----SLNW--VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVD 695 (1146)
T ss_pred cCCCchHHHHHHHHHHHcCCCEEEEec----cCCh--HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHH
Confidence 3567877655 8899999999887752 2332 577888888888873222222 34411 0012 36
Q ss_pred HHHHHHHcCCcEEee
Q 020304 198 AVETLVHSGLDVFAH 212 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~ 212 (328)
.++.+.++|++++.+
T Consensus 696 ~a~~l~~~Ga~~i~i 710 (1146)
T PRK12999 696 LAKELEKAGAHILAI 710 (1146)
T ss_pred HHHHHHHcCCCEEEE
Confidence 788899999999987
No 492
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=73.14 E-value=19 Score=33.99 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~-~e~l~~L~~aG~~ 208 (328)
+++.+.+.++++.+.|++.|.|..... + ..+..+.++++.+++.++. +.+++ .++.-+- ...+. -.++|++
T Consensus 195 ~~~~l~~~~~~~~~~Gad~I~l~DT~G--~--a~P~~v~~lv~~l~~~~~~~~i~~H~-Hnd~GlA~AN~lA-A~~aGa~ 268 (347)
T PLN02746 195 PPSKVAYVAKELYDMGCYEISLGDTIG--V--GTPGTVVPMLEAVMAVVPVDKLAVHF-HDTYGQALANILV-SLQMGIS 268 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcC--C--cCHHHHHHHHHHHHHhCCCCeEEEEE-CCCCChHHHHHHH-HHHhCCC
Confidence 345556667777777777776642221 1 1246677777777666543 33333 2221111 22222 2356777
Q ss_pred EEeech
Q 020304 209 VFAHNI 214 (328)
Q Consensus 209 ~i~~~~ 214 (328)
.+..++
T Consensus 269 ~vd~sv 274 (347)
T PLN02746 269 TVDSSV 274 (347)
T ss_pred EEEEec
Confidence 665543
No 493
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.07 E-value=75 Score=29.03 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=68.7
Q ss_pred HHHHHHHHHcC-CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSG-LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG-~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+.++.++++| +|.+-+|+-.-+.-+.... ...+.+...+.++.+++.. .+.+ ++=+.-+.++..+.++.+.+
T Consensus 107 ~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~-~~~~~~~~~eiv~~vr~~~-~~pv----~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 107 AEVAEKLSKAPNVDAIELNISCPNVKHGGMA-FGTDPELAYEVVKAVKEVV-KVPV----IVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred HHHHHHHhccCCcCEEEEECCCCCCCCCccc-cccCHHHHHHHHHHHHHhc-CCCE----EEEcCCCchhHHHHHHHHHH
Confidence 36688888999 9999886532111000000 1235677788888888721 3332 33333455688899999999
Q ss_pred CCCCEEeeecccCC------CCC-------CcccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 275 IDVDILTLGQYLQP------TPL-------HLTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 275 l~~~~i~i~~~l~P------Tp~-------~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
.|++.+.+.+.+.. +.. ....-+.+.+..++.++++....++..+..|-
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GG 242 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGG 242 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECC
Confidence 99998876443310 100 00001112233455556666666777777764
No 494
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.91 E-value=31 Score=31.28 Aligned_cols=80 Identities=18% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCC--CHHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRG--DLRAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~--~~e~l~~L~~ 204 (328)
+++++.+.++.+.+.|++.+-+.-+-+.... ..+.+.+.++++.+++.. ++.+.+ .++.... ..+.++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567788888888889998877544332111 113578889999999863 333332 2222110 1577888999
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|+|.+.+
T Consensus 188 ~Gad~i~~ 195 (289)
T cd02810 188 AGADGLTA 195 (289)
T ss_pred cCCCEEEE
Confidence 99999886
No 495
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=72.90 E-value=24 Score=31.90 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=53.0
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCC--CHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRG--DLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~--~~e~l~~L~~ 204 (328)
..+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+... .+.+.+.+..... .-+.++..++
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls---~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLT---DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCC---HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 44556678889999999999998855 5555555 4666777777665432 3555443332211 2366778888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|++.+.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 89999876
No 496
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.70 E-value=53 Score=31.28 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhC
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK 245 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 245 (328)
++.+.++++.+++. ++.+..-.+. ....+.++.+.++|++.+.++.-+.+..|.. ...+++++ .+.+++
T Consensus 117 p~l~~~iv~~~~~~--~V~v~vr~~~-~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~---~~~~~~~i---~~~ik~-- 185 (368)
T PRK08649 117 PELITERIAEIRDA--GVIVAVSLSP-QRAQELAPTVVEAGVDLFVIQGTVVSAEHVS---KEGEPLNL---KEFIYE-- 185 (368)
T ss_pred HHHHHHHHHHHHhC--eEEEEEecCC-cCHHHHHHHHHHCCCCEEEEeccchhhhccC---CcCCHHHH---HHHHHH--
Confidence 57888899999885 4554332221 1247999999999999999876665554431 12245554 444455
Q ss_pred CCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 246 KGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 246 ~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.++++ |.|-.-|.++..+.+ +.|+|.+-+.
T Consensus 186 ~~ipV----IaG~V~t~e~A~~l~----~aGAD~V~VG 215 (368)
T PRK08649 186 LDVPV----IVGGCVTYTTALHLM----RTGAAGVLVG 215 (368)
T ss_pred CCCCE----EEeCCCCHHHHHHHH----HcCCCEEEEC
Confidence 56664 556556666554443 4899988663
No 497
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=72.60 E-value=38 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++.+.+...+-+.+++.... ....+.++++.+++..+ ++.+.+..+.. +. .-+.+++.|+|.+...-
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~-----~~~~~~~~i~~l~~~~~~~~~i~vGG~~~--~~-~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTT-----HMTLMKEVIEELKEAGLDDIPVLVGGAIV--TR-DFKFLKEIGVDAYFGPA 110 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccc-----cHHHHHHHHHHHHHcCCCCCeEEEECCCC--Ch-hHHHHHHcCCeEEECCH
Confidence 45566667777887777654322 14788999999999877 67665433322 22 22578999999887743
No 498
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=72.53 E-value=25 Score=32.56 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=41.4
Q ss_pred CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-------cHHHHHHHHHHHHHhCCCcEEE
Q 020304 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 128 ~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-------~~~~l~~li~~ik~~~~~~~i~ 186 (328)
..+.+.+.+.++++++.+.|++.|.+.|.. ...|. +-.-+.+.++.||+.+|++.+.
T Consensus 53 ~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi 116 (323)
T PRK09283 53 VYRLSIDLLVKEAEEAVELGIPAVALFGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVI 116 (323)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCcC--CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEE
Confidence 344556778899999999999999988762 22221 1135788899999999987653
No 499
>PRK01362 putative translaldolase; Provisional
Probab=72.52 E-value=66 Score=28.11 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=54.9
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+.+-...+.|..++..--|..++....+.+.+.++.+.++....+..+.+ ... .+.+.+-.+..+|++.+.++.+.+
T Consensus 113 ~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila--AS~-r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 113 NQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA--ASV-RHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred HHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE--eec-CCHHHHHHHHHcCCCEEecCHHHH
Confidence 34445556788877544343333444456777887777777644555543 223 377888888899999999999999
Q ss_pred HHHHh
Q 020304 218 KRLQR 222 (328)
Q Consensus 218 ~~~~~ 222 (328)
+++.+
T Consensus 190 ~~l~~ 194 (214)
T PRK01362 190 KQLFK 194 (214)
T ss_pred HHHHc
Confidence 88764
No 500
>PRK14057 epimerase; Provisional
Probab=72.19 E-value=74 Score=28.59 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=55.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc----HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG----SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~----~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
..|....+.++.+... +..|.+.+.+|..-...- .+.+.++-+.+.++..++.+++ .++ ++.+.+..++++|
T Consensus 139 lnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeV--DGG-I~~~ti~~l~~aG 214 (254)
T PRK14057 139 LCPATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVI--DGS-LTQDQLPSLIAQG 214 (254)
T ss_pred ECCCCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEE--ECC-CCHHHHHHHHHCC
Confidence 3455556666655543 778888877764222111 1233333333333323344443 444 4899999999999
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHH
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~ 241 (328)
.|.+-.|- .+++ ..++++.++.++..
T Consensus 215 ad~~V~GS----alF~-----~~d~~~~i~~l~~~ 240 (254)
T PRK14057 215 IDRVVSGS----ALFR-----DDRLVENTRSWRAM 240 (254)
T ss_pred CCEEEECh----HhhC-----CCCHHHHHHHHHHH
Confidence 99888762 2443 23456666655543
Done!