Query 020304
Match_columns 328
No_of_seqs 293 out of 2211
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7v_A Methylornithine synthas 100.0 2.8E-30 9.6E-35 241.8 16.3 227 55-292 12-248 (350)
2 3iix_A Biotin synthetase, puta 100.0 1.6E-27 5.6E-32 222.6 22.4 240 56-312 6-257 (348)
3 1r30_A Biotin synthase; SAM ra 99.9 1.8E-25 6.3E-30 210.5 24.8 228 70-313 36-275 (369)
4 2qgq_A Protein TM_1862; alpha- 99.9 5.8E-24 2E-28 195.1 17.7 207 103-312 4-225 (304)
5 1olt_A Oxygen-independent copr 99.9 4.8E-22 1.6E-26 192.2 17.7 217 103-326 53-292 (457)
6 3c8f_A Pyruvate formate-lyase 99.8 1.6E-18 5.4E-23 153.0 15.0 202 106-319 22-244 (245)
7 1tv8_A MOAA, molybdenum cofact 99.8 5.7E-18 2E-22 157.5 18.4 176 103-288 14-198 (340)
8 2yx0_A Radical SAM enzyme; pre 99.7 3.7E-16 1.3E-20 145.4 17.8 206 108-324 75-317 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.6 2E-15 6.7E-20 138.5 12.5 206 103-325 51-295 (311)
10 3rfa_A Ribosomal RNA large sub 99.5 1E-13 3.6E-18 130.5 16.5 197 109-319 121-342 (404)
11 2a5h_A L-lysine 2,3-aminomutas 99.5 1E-13 3.4E-18 132.1 15.5 167 103-286 115-292 (416)
12 3can_A Pyruvate-formate lyase- 99.2 3.4E-10 1.2E-14 95.3 16.0 159 149-320 5-180 (182)
13 4fhd_A Spore photoproduct lyas 98.4 6.5E-07 2.2E-11 82.9 9.0 163 106-274 110-282 (368)
14 2cw6_A Hydroxymethylglutaryl-C 97.8 0.00019 6.6E-09 64.8 11.7 144 131-283 24-176 (298)
15 1ydn_A Hydroxymethylglutaryl-C 97.6 0.0024 8.1E-08 57.5 16.0 145 131-283 23-175 (295)
16 1ydo_A HMG-COA lyase; TIM-barr 97.5 0.0037 1.3E-07 56.6 15.7 141 131-283 25-177 (307)
17 2ftp_A Hydroxymethylglutaryl-C 97.2 0.0027 9.3E-08 57.3 11.5 144 131-283 27-179 (302)
18 3ewb_X 2-isopropylmalate synth 97.0 0.023 7.9E-07 50.9 15.6 140 131-282 24-169 (293)
19 3eeg_A 2-isopropylmalate synth 97.0 0.033 1.1E-06 50.7 16.4 141 130-282 24-170 (325)
20 3ivs_A Homocitrate synthase, m 96.9 0.05 1.7E-06 51.2 17.4 140 131-282 58-199 (423)
21 1nvm_A HOA, 4-hydroxy-2-oxoval 96.9 0.013 4.4E-07 53.9 12.9 138 130-282 26-168 (345)
22 3ble_A Citramalate synthase fr 96.8 0.016 5.6E-07 53.0 13.2 144 131-283 38-189 (337)
23 2ztj_A Homocitrate synthase; ( 96.6 0.086 2.9E-06 49.0 16.4 137 130-282 21-163 (382)
24 3rmj_A 2-isopropylmalate synth 96.2 0.23 8E-06 45.8 16.9 140 131-282 31-176 (370)
25 2nx9_A Oxaloacetate decarboxyl 96.2 0.19 6.7E-06 47.8 16.4 135 130-282 26-177 (464)
26 1rqb_A Transcarboxylase 5S sub 96.1 0.16 5.3E-06 49.3 15.3 135 130-282 43-194 (539)
27 2y88_A Phosphoribosyl isomeras 95.3 0.3 1E-05 41.9 12.9 131 135-284 32-170 (244)
28 4e38_A Keto-hydroxyglutarate-a 95.1 1.5 5E-05 37.7 16.4 111 132-283 44-154 (232)
29 3nav_A Tryptophan synthase alp 95.0 0.55 1.9E-05 41.4 13.8 111 168-282 6-131 (271)
30 3vnd_A TSA, tryptophan synthas 94.9 0.73 2.5E-05 40.5 14.4 112 167-282 3-129 (267)
31 1thf_D HISF protein; thermophI 94.5 1.5 5.1E-05 37.7 15.4 80 132-217 28-107 (253)
32 1vzw_A Phosphoribosyl isomeras 94.4 0.18 6E-06 43.5 9.1 77 135-218 33-109 (244)
33 1ka9_F Imidazole glycerol phos 94.3 1.6 5.5E-05 37.4 15.0 80 132-217 29-108 (252)
34 3tdn_A FLR symmetric alpha-bet 94.0 0.27 9.2E-06 42.5 9.4 78 134-217 35-112 (247)
35 1h5y_A HISF; histidine biosynt 93.9 2.6 9E-05 35.7 16.4 78 133-216 32-109 (253)
36 1vhc_A Putative KHG/KDPG aldol 93.8 2.8 9.6E-05 35.6 16.0 111 132-283 27-137 (224)
37 2yci_X 5-methyltetrahydrofolat 93.6 1.2 4.3E-05 39.1 13.0 135 131-275 31-192 (271)
38 1eye_A DHPS 1, dihydropteroate 93.5 1.1 3.7E-05 39.7 12.4 137 131-275 26-199 (280)
39 3lab_A Putative KDPG (2-keto-3 93.1 2.2 7.5E-05 36.2 13.1 68 132-211 23-90 (217)
40 2r91_A 2-keto-3-deoxy-(6-phosp 93.0 1.6 5.3E-05 38.7 12.8 102 196-318 22-125 (286)
41 2dqw_A Dihydropteroate synthas 93.0 1.3 4.6E-05 39.3 12.2 134 131-275 49-219 (294)
42 1w3i_A EDA, 2-keto-3-deoxy glu 93.0 1.6 5.3E-05 38.8 12.8 101 197-318 24-126 (293)
43 3tsm_A IGPS, indole-3-glycerol 92.8 4.7 0.00016 35.3 16.6 119 134-284 79-197 (272)
44 2nuw_A 2-keto-3-deoxygluconate 92.7 1.7 5.7E-05 38.6 12.6 101 197-318 24-126 (288)
45 4af0_A Inosine-5'-monophosphat 92.6 0.86 2.9E-05 43.9 10.9 134 135-286 281-416 (556)
46 3inp_A D-ribulose-phosphate 3- 92.5 1.1 3.8E-05 38.8 10.8 153 132-317 38-195 (246)
47 1aj0_A DHPS, dihydropteroate s 92.4 1.5 5.3E-05 38.7 11.8 138 131-275 35-207 (282)
48 2vp8_A Dihydropteroate synthas 92.4 0.28 9.6E-06 44.2 7.1 139 131-275 62-239 (318)
49 3qja_A IGPS, indole-3-glycerol 92.3 5.5 0.00019 34.9 15.5 119 134-284 72-190 (272)
50 2y5s_A DHPS, dihydropteroate s 92.2 1 3.6E-05 40.0 10.5 139 130-276 42-217 (294)
51 1mxs_A KDPG aldolase; 2-keto-3 92.0 5.1 0.00017 34.0 15.2 111 132-283 36-146 (225)
52 2ekc_A AQ_1548, tryptophan syn 92.0 5.7 0.0002 34.5 16.3 81 169-250 4-97 (262)
53 3m5v_A DHDPS, dihydrodipicolin 91.8 2.4 8.2E-05 37.8 12.6 77 197-282 32-109 (301)
54 4gj1_A 1-(5-phosphoribosyl)-5- 91.8 1.8 6.3E-05 37.3 11.4 163 132-322 29-203 (243)
55 3lmz_A Putative sugar isomeras 91.7 3.1 0.00011 35.5 13.0 98 196-319 33-130 (257)
56 1tqj_A Ribulose-phosphate 3-ep 91.7 0.85 2.9E-05 39.0 9.1 161 132-322 15-180 (230)
57 1wbh_A KHG/KDPG aldolase; lyas 91.6 5.4 0.00019 33.5 16.2 111 132-283 26-136 (214)
58 4fxs_A Inosine-5'-monophosphat 91.6 7.3 0.00025 37.2 16.4 131 134-286 230-366 (496)
59 3cpr_A Dihydrodipicolinate syn 91.2 2.8 9.7E-05 37.4 12.4 103 197-317 41-144 (304)
60 1h1y_A D-ribulose-5-phosphate 91.1 1.6 5.3E-05 37.2 10.2 160 132-322 17-180 (228)
61 2bdq_A Copper homeostasis prot 91.1 0.8 2.7E-05 39.0 8.0 133 137-291 79-217 (224)
62 3usb_A Inosine-5'-monophosphat 91.1 8.7 0.0003 36.8 16.5 132 134-286 255-391 (511)
63 1xky_A Dihydrodipicolinate syn 90.9 2.3 7.9E-05 37.9 11.4 76 197-282 37-113 (301)
64 3flu_A DHDPS, dihydrodipicolin 90.8 2.4 8.4E-05 37.6 11.5 104 197-318 32-136 (297)
65 3e96_A Dihydrodipicolinate syn 90.8 1.6 5.4E-05 39.3 10.3 123 176-318 8-140 (316)
66 3qze_A DHDPS, dihydrodipicolin 90.7 2.6 8.9E-05 37.8 11.6 104 197-318 48-152 (314)
67 4avf_A Inosine-5'-monophosphat 90.6 12 0.00041 35.6 17.5 132 134-286 228-364 (490)
68 3na8_A Putative dihydrodipicol 90.6 2.4 8.1E-05 38.1 11.2 125 176-318 21-153 (315)
69 3tr9_A Dihydropteroate synthas 90.5 1.4 4.7E-05 39.6 9.5 136 132-274 47-223 (314)
70 2ehh_A DHDPS, dihydrodipicolin 90.4 2.8 9.7E-05 37.1 11.5 76 197-282 25-101 (294)
71 2yxg_A DHDPS, dihydrodipicolin 90.3 2.5 8.6E-05 37.4 11.0 76 197-282 25-101 (289)
72 2y7e_A 3-keto-5-aminohexanoate 90.1 1.2 4.1E-05 39.4 8.6 83 129-212 29-113 (282)
73 3fst_A 5,10-methylenetetrahydr 90.1 5.2 0.00018 35.7 12.9 119 131-267 94-222 (304)
74 3si9_A DHDPS, dihydrodipicolin 90.0 2.5 8.5E-05 38.0 10.9 76 197-282 47-123 (315)
75 1f6k_A N-acetylneuraminate lya 90.0 3 0.0001 37.0 11.3 76 197-282 28-105 (293)
76 3fkr_A L-2-keto-3-deoxyarabona 89.8 3.4 0.00011 37.0 11.6 76 197-282 33-109 (309)
77 2vc6_A MOSA, dihydrodipicolina 89.8 3 0.0001 37.0 11.1 76 197-282 25-101 (292)
78 2rfg_A Dihydrodipicolinate syn 89.7 2.4 8.3E-05 37.7 10.5 76 197-282 25-101 (297)
79 3d0c_A Dihydrodipicolinate syn 89.7 3.1 0.00011 37.3 11.3 103 197-317 37-139 (314)
80 3daq_A DHDPS, dihydrodipicolin 89.7 3.1 0.0001 36.9 11.1 103 197-318 27-131 (292)
81 1m5w_A Pyridoxal phosphate bio 89.7 1.4 4.9E-05 37.7 8.3 106 165-286 112-218 (243)
82 3l21_A DHDPS, dihydrodipicolin 89.6 2.2 7.6E-05 38.1 10.2 76 197-282 40-116 (304)
83 2v9d_A YAGE; dihydrodipicolini 89.5 2.4 8.1E-05 38.6 10.4 76 197-282 56-132 (343)
84 1o5k_A DHDPS, dihydrodipicolin 89.4 2.8 9.6E-05 37.4 10.7 76 197-282 37-113 (306)
85 3b4u_A Dihydrodipicolinate syn 89.3 3.8 0.00013 36.3 11.5 76 197-282 28-104 (294)
86 3dxi_A Putative aldolase; TIM 89.3 2.3 7.9E-05 38.3 10.0 136 130-282 20-162 (320)
87 3tak_A DHDPS, dihydrodipicolin 89.2 2.9 9.9E-05 37.0 10.6 104 197-318 26-130 (291)
88 1jvn_A Glutamine, bifunctional 89.2 2.1 7E-05 41.7 10.4 83 134-219 280-373 (555)
89 3bg3_A Pyruvate carboxylase, m 89.2 4.6 0.00016 40.5 13.0 135 130-282 121-280 (718)
90 2r8w_A AGR_C_1641P; APC7498, d 89.2 2.8 9.6E-05 37.9 10.6 102 197-317 59-162 (332)
91 2ojp_A DHDPS, dihydrodipicolin 89.0 2.5 8.5E-05 37.5 10.0 76 197-282 26-102 (292)
92 2wkj_A N-acetylneuraminate lya 88.9 3.1 0.00011 37.0 10.7 100 197-315 36-137 (303)
93 3chv_A Prokaryotic domain of u 88.8 1.1 3.9E-05 39.6 7.4 141 129-273 29-198 (284)
94 3gk0_A PNP synthase, pyridoxin 88.8 1.4 4.7E-05 38.4 7.7 105 165-286 140-246 (278)
95 1qwg_A PSL synthase;, (2R)-pho 88.6 7.6 0.00026 33.5 12.3 114 148-282 39-167 (251)
96 1qop_A Tryptophan synthase alp 88.5 11 0.00039 32.6 13.9 81 197-282 35-128 (268)
97 3no5_A Uncharacterized protein 88.5 1.2 4.2E-05 39.2 7.5 61 129-189 25-85 (275)
98 1twd_A Copper homeostasis prot 88.4 1.6 5.4E-05 37.9 7.9 121 137-283 76-198 (256)
99 3s5o_A 4-hydroxy-2-oxoglutarat 87.8 5.6 0.00019 35.5 11.6 76 197-282 39-115 (307)
100 3a5f_A Dihydrodipicolinate syn 87.5 2.3 8E-05 37.6 8.8 81 191-282 17-102 (291)
101 2w6r_A Imidazole glycerol phos 87.4 2.8 9.6E-05 36.2 9.2 77 134-216 30-106 (266)
102 3eb2_A Putative dihydrodipicol 87.4 2.3 7.9E-05 37.8 8.7 75 197-282 29-105 (300)
103 3h5d_A DHDPS, dihydrodipicolin 87.3 6.2 0.00021 35.3 11.6 104 196-318 31-137 (311)
104 3ctl_A D-allulose-6-phosphate 87.2 4.7 0.00016 34.4 10.2 150 133-316 12-166 (231)
105 3p6l_A Sugar phosphate isomera 86.2 8.9 0.00031 32.6 11.8 120 182-319 9-132 (262)
106 3qfe_A Putative dihydrodipicol 86.2 5.8 0.0002 35.6 10.7 75 197-282 36-112 (318)
107 1vrd_A Inosine-5'-monophosphat 86.1 19 0.00066 34.1 15.1 130 134-284 236-370 (494)
108 1vc4_A Indole-3-glycerol phosp 86.1 16 0.00054 31.5 15.3 119 134-285 65-183 (254)
109 1i60_A IOLI protein; beta barr 86.0 3.3 0.00011 35.4 8.9 18 196-213 17-34 (278)
110 3mcm_A 2-amino-4-hydroxy-6-hyd 85.6 2.1 7.3E-05 40.2 7.7 137 131-273 209-386 (442)
111 4fo4_A Inosine 5'-monophosphat 85.6 17 0.00058 33.2 13.7 116 138-282 61-176 (366)
112 3dz1_A Dihydrodipicolinate syn 85.5 8.2 0.00028 34.4 11.4 98 197-315 33-132 (313)
113 1qpo_A Quinolinate acid phosph 85.4 2.4 8.2E-05 37.5 7.6 67 137-214 204-270 (284)
114 1tx2_A DHPS, dihydropteroate s 85.4 7.1 0.00024 34.7 10.7 136 133-275 62-226 (297)
115 1tqx_A D-ribulose-5-phosphate 85.1 9.4 0.00032 32.4 11.0 78 133-213 123-201 (227)
116 3apt_A Methylenetetrahydrofola 85.0 4.7 0.00016 36.1 9.5 103 131-248 83-200 (310)
117 3o6c_A PNP synthase, pyridoxin 84.9 2.9 9.9E-05 36.1 7.5 107 166-286 110-238 (260)
118 2hmc_A AGR_L_411P, dihydrodipi 84.6 12 0.00041 33.9 12.1 44 229-274 102-147 (344)
119 3c6c_A 3-keto-5-aminohexanoate 84.3 3 0.0001 37.5 7.7 61 129-189 43-104 (316)
120 2ftp_A Hydroxymethylglutaryl-C 84.3 6 0.00021 35.1 9.9 128 130-274 155-284 (302)
121 4fo4_A Inosine 5'-monophosphat 84.2 25 0.00085 32.1 16.0 131 135-286 108-243 (366)
122 2b7n_A Probable nicotinate-nuc 83.7 2.5 8.5E-05 37.2 6.9 66 138-214 193-258 (273)
123 3noy_A 4-hydroxy-3-methylbut-2 83.2 21 0.00071 32.4 12.8 124 133-282 45-182 (366)
124 3khj_A Inosine-5-monophosphate 83.1 27 0.00092 31.8 14.1 93 166-282 80-172 (361)
125 2jbm_A Nicotinate-nucleotide p 83.0 2.4 8E-05 37.9 6.5 66 138-214 208-273 (299)
126 4djd_D C/Fe-SP, corrinoid/iron 82.8 19 0.00065 32.3 12.5 138 134-274 80-236 (323)
127 3k13_A 5-methyltetrahydrofolat 82.3 23 0.00079 31.4 12.7 72 132-211 35-111 (300)
128 2ekc_A AQ_1548, tryptophan syn 82.1 24 0.00081 30.4 13.5 79 134-212 31-128 (262)
129 1nvm_A HOA, 4-hydroxy-2-oxoval 82.1 14 0.00049 33.3 11.7 78 132-213 147-226 (345)
130 3tva_A Xylose isomerase domain 81.9 3.7 0.00013 35.6 7.5 111 196-319 24-156 (290)
131 1qop_A Tryptophan synthase alp 81.7 8.7 0.0003 33.4 9.7 80 134-213 31-129 (268)
132 3ble_A Citramalate synthase fr 81.6 12 0.00041 33.7 10.9 99 132-240 167-267 (337)
133 3hbl_A Pyruvate carboxylase; T 81.2 37 0.0013 36.0 15.8 77 132-212 553-646 (1150)
134 1pii_A N-(5'phosphoribosyl)ant 81.1 18 0.0006 34.1 12.1 62 139-212 122-183 (452)
135 1hjs_A Beta-1,4-galactanase; 4 81.0 30 0.001 30.9 13.7 135 140-283 33-212 (332)
136 3tha_A Tryptophan synthase alp 80.8 3.3 0.00011 36.0 6.4 49 228-282 72-122 (252)
137 1o4u_A Type II quinolic acid p 80.8 1.9 6.4E-05 38.2 5.0 67 137-214 203-269 (285)
138 2isw_A Putative fructose-1,6-b 80.7 16 0.00054 32.8 11.0 169 133-322 28-211 (323)
139 3e49_A Uncharacterized protein 80.4 18 0.0006 32.3 11.3 83 129-213 27-113 (311)
140 3e02_A Uncharacterized protein 80.3 7 0.00024 35.0 8.6 82 129-212 27-112 (311)
141 3r2g_A Inosine 5'-monophosphat 79.9 9.2 0.00032 34.9 9.5 131 134-286 99-231 (361)
142 1ka9_F Imidazole glycerol phos 79.8 25 0.00084 29.7 11.9 98 135-251 153-250 (252)
143 1zco_A 2-dehydro-3-deoxyphosph 79.5 10 0.00035 32.9 9.3 66 252-321 24-93 (262)
144 1thf_D HISF protein; thermophI 79.2 18 0.00062 30.6 10.9 98 135-251 152-249 (253)
145 1f6y_A 5-methyltetrahydrofolat 79.1 26 0.00088 30.3 11.8 72 132-211 23-96 (262)
146 3ovp_A Ribulose-phosphate 3-ep 79.0 7.6 0.00026 33.0 8.2 95 132-250 15-115 (228)
147 2p0o_A Hypothetical protein DU 78.8 28 0.00095 31.9 12.2 186 133-323 16-223 (372)
148 3lot_A Uncharacterized protein 78.8 6.2 0.00021 35.3 7.8 85 128-213 26-115 (314)
149 1geq_A Tryptophan synthase alp 78.5 29 0.001 29.2 16.6 77 134-214 19-116 (248)
150 3hq1_A 2-isopropylmalate synth 78.1 24 0.00082 34.8 12.3 139 131-278 90-244 (644)
151 4dpp_A DHDPS 2, dihydrodipicol 78.1 12 0.0004 34.2 9.5 76 197-282 84-160 (360)
152 3paj_A Nicotinate-nucleotide p 78.0 7.8 0.00027 34.8 8.1 64 137-214 241-304 (320)
153 1ydn_A Hydroxymethylglutaryl-C 77.9 6.9 0.00024 34.5 7.9 126 131-275 152-281 (295)
154 3cqj_A L-ribulose-5-phosphate 77.9 10 0.00035 32.8 9.1 81 196-282 33-127 (295)
155 4gj1_A 1-(5-phosphoribosyl)-5- 77.8 17 0.00059 31.0 10.2 94 131-238 148-241 (243)
156 3l0g_A Nicotinate-nucleotide p 77.7 4.8 0.00016 35.7 6.6 64 137-214 217-280 (300)
157 3otr_A Enolase; structural gen 77.3 48 0.0016 31.1 15.1 156 131-326 281-441 (452)
158 3dx5_A Uncharacterized protein 77.2 4.4 0.00015 35.0 6.4 116 196-319 18-140 (286)
159 3f4w_A Putative hexulose 6 pho 77.2 9.7 0.00033 31.4 8.3 91 170-282 41-133 (211)
160 2cw6_A Hydroxymethylglutaryl-C 77.1 8.1 0.00028 34.1 8.1 124 132-274 154-281 (298)
161 1vli_A Spore coat polysacchari 77.0 27 0.00093 32.1 11.7 75 133-213 43-141 (385)
162 3b0p_A TRNA-dihydrouridine syn 77.0 20 0.00069 32.4 10.9 76 135-213 145-225 (350)
163 2yw3_A 4-hydroxy-2-oxoglutarat 76.7 31 0.0011 28.6 16.0 109 132-283 23-131 (207)
164 3vnd_A TSA, tryptophan synthas 76.5 22 0.00074 31.0 10.5 79 134-212 32-129 (267)
165 2vef_A Dihydropteroate synthas 76.3 3 0.0001 37.5 5.0 75 132-211 31-110 (314)
166 1zfj_A Inosine monophosphate d 76.1 51 0.0017 31.0 14.0 129 136-285 234-367 (491)
167 1qo2_A Molecule: N-((5-phospho 76.1 0.8 2.8E-05 39.2 1.1 76 133-216 29-105 (241)
168 1x7f_A Outer surface protein; 75.9 16 0.00053 33.7 9.7 180 135-323 42-251 (385)
169 3ffs_A Inosine-5-monophosphate 75.7 26 0.00089 32.4 11.3 130 137-286 146-278 (400)
170 1rpx_A Protein (ribulose-phosp 75.7 13 0.00043 31.3 8.7 79 132-215 21-100 (230)
171 1h5y_A HISF; histidine biosynt 75.6 27 0.00092 29.2 10.9 97 135-250 155-251 (253)
172 3tqv_A Nicotinate-nucleotide p 75.5 7 0.00024 34.5 7.0 64 137-214 208-271 (287)
173 1vp8_A Hypothetical protein AF 75.2 15 0.00053 30.3 8.4 87 139-239 35-133 (201)
174 3ewb_X 2-isopropylmalate synth 75.1 10 0.00035 33.5 8.2 125 132-275 148-277 (293)
175 1vs1_A 3-deoxy-7-phosphoheptul 75.0 12 0.00042 32.7 8.6 66 252-321 39-108 (276)
176 1vzw_A Phosphoribosyl isomeras 75.0 15 0.0005 31.1 9.0 90 135-238 147-239 (244)
177 1zlp_A PSR132, petal death pro 74.9 37 0.0013 30.3 11.8 85 195-282 48-135 (318)
178 3gr7_A NADPH dehydrogenase; fl 74.8 8.3 0.00028 34.9 7.6 78 132-213 227-307 (340)
179 3gnn_A Nicotinate-nucleotide p 74.8 7.3 0.00025 34.6 7.0 64 137-214 219-282 (298)
180 3bg3_A Pyruvate carboxylase, m 74.5 25 0.00085 35.2 11.5 77 132-212 259-336 (718)
181 3b0p_A TRNA-dihydrouridine syn 74.1 33 0.0011 30.9 11.5 125 197-322 74-204 (350)
182 4hb7_A Dihydropteroate synthas 74.1 3 0.0001 36.5 4.2 135 132-274 28-191 (270)
183 3qc0_A Sugar isomerase; TIM ba 74.1 12 0.00042 31.7 8.4 110 196-319 21-140 (275)
184 3o63_A Probable thiamine-phosp 74.1 30 0.001 29.5 10.7 145 134-322 43-198 (243)
185 1jvn_A Glutamine, bifunctional 73.7 37 0.0013 32.8 12.4 98 135-251 453-551 (555)
186 3nl6_A Thiamine biosynthetic b 73.7 36 0.0012 32.7 12.2 145 134-322 25-180 (540)
187 3q94_A Fructose-bisphosphate a 73.7 29 0.001 30.5 10.6 135 133-282 31-178 (288)
188 3iwp_A Copper homeostasis prot 73.6 11 0.00039 33.1 7.9 122 137-283 114-238 (287)
189 1rvg_A Fructose-1,6-bisphospha 73.6 32 0.0011 30.5 10.9 169 133-322 27-209 (305)
190 2qf7_A Pyruvate carboxylase pr 73.5 78 0.0027 33.6 15.6 134 131-282 570-728 (1165)
191 3nvt_A 3-deoxy-D-arabino-heptu 73.4 17 0.00056 33.6 9.3 65 253-321 144-212 (385)
192 3vav_A 3-methyl-2-oxobutanoate 73.3 46 0.0016 29.0 12.0 85 195-282 38-125 (275)
193 1rqb_A Transcarboxylase 5S sub 73.1 22 0.00075 34.3 10.4 77 132-212 173-251 (539)
194 3ngf_A AP endonuclease, family 72.8 12 0.00041 32.0 8.0 42 169-212 25-67 (269)
195 1ydo_A HMG-COA lyase; TIM-barr 72.5 5 0.00017 35.8 5.5 126 131-274 154-282 (307)
196 2h9a_B CO dehydrogenase/acetyl 72.3 52 0.0018 29.2 13.3 138 134-274 74-229 (310)
197 1vr6_A Phospho-2-dehydro-3-deo 72.2 22 0.00077 32.2 9.8 67 251-321 106-176 (350)
198 2v5b_A Triosephosphate isomera 72.0 44 0.0015 28.6 11.1 58 196-265 71-128 (244)
199 1gvf_A Tagatose-bisphosphate a 71.9 27 0.00091 30.7 9.9 166 134-321 29-208 (286)
200 2wqp_A Polysialic acid capsule 71.7 58 0.002 29.4 15.7 108 133-248 34-175 (349)
201 2ze3_A DFA0005; organic waste 71.2 16 0.00055 32.0 8.3 87 194-282 24-111 (275)
202 1jub_A Dihydroorotate dehydrog 71.2 17 0.0006 32.0 8.8 84 196-284 109-193 (311)
203 1vhn_A Putative flavin oxidore 71.1 13 0.00045 33.0 8.0 102 134-242 140-251 (318)
204 1r3s_A URO-D, uroporphyrinogen 71.0 30 0.001 31.3 10.6 71 140-213 203-283 (367)
205 1yx1_A Hypothetical protein PA 70.2 25 0.00086 29.7 9.5 20 263-282 84-103 (264)
206 1wa3_A 2-keto-3-deoxy-6-phosph 69.9 43 0.0015 27.2 11.2 111 132-283 20-131 (205)
207 3nav_A Tryptophan synthase alp 69.7 56 0.0019 28.4 12.5 123 136-284 114-238 (271)
208 1xi3_A Thiamine phosphate pyro 69.5 23 0.00079 29.0 8.8 142 135-322 27-169 (215)
209 2nx9_A Oxaloacetate decarboxyl 69.2 54 0.0018 30.9 12.1 76 132-212 156-232 (464)
210 3n9r_A Fructose-bisphosphate a 69.0 46 0.0016 29.5 10.8 134 133-282 27-174 (307)
211 1jcn_A Inosine monophosphate d 69.0 28 0.00094 33.2 10.3 134 135-286 255-390 (514)
212 3r8r_A Transaldolase; pentose 68.8 15 0.00051 30.9 7.3 79 140-221 116-194 (212)
213 1z41_A YQJM, probable NADH-dep 68.8 13 0.00045 33.4 7.5 77 133-213 228-307 (338)
214 1fob_A Beta-1,4-galactanase; B 68.7 64 0.0022 28.7 13.7 135 139-283 32-213 (334)
215 3usb_A Inosine-5'-monophosphat 68.6 60 0.0021 30.9 12.5 125 135-282 194-324 (511)
216 4g1k_A Triosephosphate isomera 68.4 16 0.00056 31.9 7.6 57 198-266 104-160 (272)
217 3eeg_A 2-isopropylmalate synth 67.6 13 0.00044 33.4 7.1 100 132-240 149-252 (325)
218 3m9y_A Triosephosphate isomera 67.5 19 0.00065 31.1 7.9 88 167-266 45-138 (254)
219 1h1y_A D-ribulose-5-phosphate 67.4 37 0.0013 28.4 9.7 71 140-213 129-201 (228)
220 1r2r_A TIM, triosephosphate is 67.3 20 0.00067 30.9 7.9 57 198-266 79-135 (248)
221 2yc6_A Triosephosphate isomera 67.1 20 0.00068 31.0 7.9 57 198-266 80-136 (257)
222 1yya_A Triosephosphate isomera 67.1 20 0.00068 30.9 7.9 57 198-266 78-134 (250)
223 1o5x_A TIM, triosephosphate is 66.9 20 0.00069 30.8 7.9 57 198-266 79-135 (248)
224 2y88_A Phosphoribosyl isomeras 66.8 11 0.00039 31.7 6.4 73 135-213 150-225 (244)
225 3ta6_A Triosephosphate isomera 66.8 20 0.00067 31.3 7.8 88 167-266 48-140 (267)
226 2cc0_A Acetyl-xylan esterase; 66.7 15 0.00051 30.0 6.9 131 138-285 47-185 (195)
227 3kxq_A Triosephosphate isomera 66.6 18 0.00061 31.7 7.5 57 198-266 104-160 (275)
228 2bmb_A Folic acid synthesis pr 66.6 23 0.00079 34.1 9.0 42 234-277 416-460 (545)
229 2q02_A Putative cytoplasmic pr 66.5 11 0.00038 32.0 6.3 13 197-209 55-67 (272)
230 3qst_A Triosephosphate isomera 66.5 19 0.00065 31.1 7.7 57 198-266 81-137 (255)
231 3ozy_A Putative mandelate race 66.5 77 0.0026 28.8 13.2 146 132-319 151-302 (389)
232 1ney_A TIM, triosephosphate is 66.4 21 0.00072 30.7 7.8 56 198-265 78-133 (247)
233 3krs_A Triosephosphate isomera 66.4 20 0.0007 31.2 7.9 57 198-266 102-158 (271)
234 1b9b_A TIM, protein (triosepho 66.4 21 0.0007 30.9 7.8 57 198-266 80-136 (255)
235 2jgq_A Triosephosphate isomera 66.3 23 0.00078 30.2 8.0 58 198-267 73-130 (233)
236 2vxn_A Triosephosphate isomera 66.3 21 0.00072 30.8 7.9 56 198-265 80-135 (251)
237 1xg4_A Probable methylisocitra 66.2 52 0.0018 28.9 10.7 87 194-283 25-114 (295)
238 3lye_A Oxaloacetate acetyl hyd 66.2 70 0.0024 28.3 11.5 85 195-282 34-122 (307)
239 2i9e_A Triosephosphate isomera 66.1 21 0.00073 30.9 7.9 57 198-266 78-134 (259)
240 2w6r_A Imidazole glycerol phos 65.9 29 0.001 29.5 9.0 73 135-213 157-229 (266)
241 1mo0_A TIM, triosephosphate is 65.7 22 0.00074 31.1 7.9 57 198-266 98-154 (275)
242 3th6_A Triosephosphate isomera 65.5 19 0.00063 31.1 7.4 57 198-266 79-135 (249)
243 1gte_A Dihydropyrimidine dehyd 65.4 76 0.0026 33.0 13.4 167 134-317 648-844 (1025)
244 3vni_A Xylose isomerase domain 65.4 64 0.0022 27.5 12.8 110 196-319 20-149 (294)
245 3rmj_A 2-isopropylmalate synth 65.2 21 0.00073 32.6 8.2 98 132-239 155-257 (370)
246 2eja_A URO-D, UPD, uroporphyri 65.2 74 0.0025 28.2 13.1 148 139-316 184-337 (338)
247 1ur4_A Galactanase; hydrolase, 65.1 69 0.0024 29.5 11.7 136 139-283 53-232 (399)
248 3s1x_A Probable transaldolase; 64.9 20 0.00067 30.4 7.3 80 139-221 117-196 (223)
249 2hjp_A Phosphonopyruvate hydro 64.9 66 0.0023 28.2 11.1 85 194-282 23-109 (290)
250 3cu2_A Ribulose-5-phosphate 3- 64.9 9.4 0.00032 32.6 5.4 76 132-216 24-102 (237)
251 3hgj_A Chromate reductase; TIM 64.5 70 0.0024 28.7 11.5 87 197-283 156-259 (349)
252 1ccw_A Protein (glutamate muta 64.0 28 0.00096 26.7 7.6 71 137-212 44-118 (137)
253 3cpr_A Dihydrodipicolinate syn 63.8 25 0.00085 31.1 8.2 78 131-212 34-117 (304)
254 3sr7_A Isopentenyl-diphosphate 63.7 22 0.00076 32.4 8.0 80 196-283 158-237 (365)
255 3u0h_A Xylose isomerase domain 63.7 12 0.0004 32.0 6.0 77 196-282 19-103 (281)
256 3f4w_A Putative hexulose 6 pho 63.2 20 0.00068 29.4 7.1 73 134-213 114-187 (211)
257 1tre_A Triosephosphate isomera 63.0 23 0.0008 30.5 7.5 57 198-266 79-135 (255)
258 3obk_A Delta-aminolevulinic ac 62.9 8.8 0.0003 34.5 4.8 66 121-186 60-132 (356)
259 2yxb_A Coenzyme B12-dependent 62.9 47 0.0016 26.2 9.0 69 136-212 58-127 (161)
260 2e6f_A Dihydroorotate dehydrog 62.4 18 0.00062 31.9 7.1 122 196-322 109-251 (314)
261 2r91_A 2-keto-3-deoxy-(6-phosp 62.4 8.5 0.00029 33.8 4.8 75 132-212 17-96 (286)
262 1m6j_A TIM, TPI, triosephospha 62.3 21 0.00072 31.0 7.2 57 198-266 86-142 (261)
263 1u83_A Phosphosulfolactate syn 62.1 40 0.0014 29.4 8.8 111 148-282 66-191 (276)
264 3dz1_A Dihydrodipicolinate syn 62.1 22 0.00074 31.6 7.5 78 131-212 26-108 (313)
265 1eep_A Inosine 5'-monophosphat 62.0 27 0.00092 32.1 8.4 70 136-214 154-223 (404)
266 4f3h_A Fimxeal, putative uncha 61.9 45 0.0016 28.0 9.4 126 177-322 89-220 (250)
267 1q7z_A 5-methyltetrahydrofolat 61.4 96 0.0033 30.0 12.4 136 132-277 338-500 (566)
268 3m5v_A DHDPS, dihydrodipicolin 61.3 22 0.00076 31.4 7.4 77 132-212 26-109 (301)
269 3ngj_A Deoxyribose-phosphate a 61.0 14 0.00049 31.6 5.8 129 134-282 95-228 (239)
270 1fob_A Beta-1,4-galactanase; B 60.4 20 0.00067 32.2 7.0 54 195-256 29-82 (334)
271 3khj_A Inosine-5-monophosphate 60.3 98 0.0034 28.0 16.1 127 137-286 107-239 (361)
272 1rd5_A Tryptophan synthase alp 60.2 79 0.0027 26.8 12.7 130 169-319 5-147 (262)
273 4eiv_A Deoxyribose-phosphate a 60.2 21 0.00073 31.5 6.8 144 134-280 100-262 (297)
274 3l21_A DHDPS, dihydrodipicolin 60.2 31 0.0011 30.5 8.1 78 131-212 33-116 (304)
275 1oy0_A Ketopantoate hydroxymet 60.0 88 0.003 27.3 11.6 14 196-209 139-152 (281)
276 1j93_A UROD, uroporphyrinogen 59.9 45 0.0015 29.8 9.4 148 139-316 198-353 (353)
277 1w5q_A Delta-aminolevulinic ac 59.9 9.3 0.00032 34.1 4.4 59 128-186 60-125 (337)
278 2btm_A TIM, protein (triosepho 59.9 22 0.00076 30.6 6.8 57 198-266 78-134 (252)
279 3tha_A Tryptophan synthase alp 59.3 67 0.0023 27.6 9.8 121 136-284 105-228 (252)
280 3q45_A Mandelate racemase/muco 59.3 82 0.0028 28.4 11.1 147 132-320 140-291 (368)
281 2p10_A MLL9387 protein; putati 59.2 64 0.0022 28.2 9.6 118 137-271 111-249 (286)
282 1aw2_A Triosephosphate isomera 59.2 23 0.00079 30.6 6.8 57 198-266 81-137 (256)
283 1vpx_A Protein (transaldolase 59.2 20 0.00067 30.5 6.3 118 137-283 22-141 (230)
284 2yxg_A DHDPS, dihydrodipicolin 59.1 28 0.00097 30.4 7.7 77 132-212 19-101 (289)
285 1o66_A 3-methyl-2-oxobutanoate 58.6 92 0.0032 27.1 12.1 86 195-282 26-114 (275)
286 2fli_A Ribulose-phosphate 3-ep 58.4 35 0.0012 28.0 7.9 75 132-215 14-93 (220)
287 3c2e_A Nicotinate-nucleotide p 58.3 5.9 0.0002 35.1 3.0 66 138-214 210-278 (294)
288 2j27_A Triosephosphate isomera 58.3 28 0.00094 30.0 7.2 57 198-266 79-135 (250)
289 1g94_A Alpha-amylase; beta-alp 58.3 28 0.00095 32.4 7.9 67 254-320 5-83 (448)
290 1k77_A EC1530, hypothetical pr 57.8 28 0.00095 29.2 7.2 42 169-212 17-59 (260)
291 3l5l_A Xenobiotic reductase A; 57.7 23 0.00077 32.2 6.9 76 134-213 246-325 (363)
292 1vrd_A Inosine-5'-monophosphat 57.5 39 0.0013 31.9 8.8 68 196-283 239-306 (494)
293 2nuw_A 2-keto-3-deoxygluconate 57.5 9.8 0.00033 33.5 4.3 76 131-212 17-97 (288)
294 3n6q_A YGHZ aldo-keto reductas 57.1 73 0.0025 28.3 10.3 164 133-326 42-227 (346)
295 1w3i_A EDA, 2-keto-3-deoxy glu 57.0 9.8 0.00034 33.5 4.3 76 131-212 17-97 (293)
296 3b4u_A Dihydrodipicolinate syn 57.0 18 0.00062 31.8 6.0 78 131-212 21-104 (294)
297 2ovl_A Putative racemase; stru 56.9 70 0.0024 28.8 10.2 149 132-321 146-299 (371)
298 3ajx_A 3-hexulose-6-phosphate 56.9 76 0.0026 25.6 10.0 72 134-215 13-86 (207)
299 1ny1_A Probable polysaccharide 56.7 30 0.001 29.2 7.2 135 138-285 86-229 (240)
300 1qap_A Quinolinic acid phospho 56.6 19 0.00065 31.8 6.0 64 137-214 218-281 (296)
301 4avf_A Inosine-5'-monophosphat 56.5 60 0.0021 30.7 9.9 68 195-282 230-297 (490)
302 2ehh_A DHDPS, dihydrodipicolin 56.4 22 0.00077 31.2 6.5 77 132-212 19-101 (294)
303 3p6l_A Sugar phosphate isomera 56.0 89 0.003 26.1 11.5 76 135-212 23-110 (262)
304 3cny_A Inositol catabolism pro 55.7 37 0.0013 29.1 7.9 71 196-283 34-110 (301)
305 3hgj_A Chromate reductase; TIM 55.6 31 0.0011 31.1 7.5 78 132-213 237-318 (349)
306 3a5f_A Dihydrodipicolinate syn 55.3 21 0.00072 31.3 6.1 78 131-212 19-102 (291)
307 3ngj_A Deoxyribose-phosphate a 55.2 98 0.0033 26.3 15.6 159 132-322 41-207 (239)
308 1yxy_A Putative N-acetylmannos 55.0 64 0.0022 26.8 9.0 123 136-284 90-216 (234)
309 1h7n_A 5-aminolaevulinic acid 54.9 21 0.00073 31.9 5.9 62 126-187 61-130 (342)
310 2f6u_A GGGPS, (S)-3-O-geranylg 54.9 97 0.0033 26.2 10.0 124 184-321 11-171 (234)
311 1l6s_A Porphobilinogen synthas 54.8 19 0.00066 31.9 5.6 59 126-186 50-115 (323)
312 3jr2_A Hexulose-6-phosphate sy 54.7 89 0.003 25.7 9.8 90 171-282 48-138 (218)
313 2r8w_A AGR_C_1641P; APC7498, d 54.7 26 0.00088 31.5 6.7 77 132-212 53-135 (332)
314 1z41_A YQJM, probable NADH-dep 54.4 1.2E+02 0.004 27.0 12.4 87 197-284 148-250 (338)
315 1ea9_C Cyclomaltodextrinase; h 54.3 23 0.00079 34.3 6.8 62 259-320 168-237 (583)
316 3s83_A Ggdef family protein; s 54.1 96 0.0033 26.0 10.2 99 166-283 138-237 (259)
317 2iw0_A Chitin deacetylase; hyd 54.1 26 0.00088 30.0 6.4 141 137-286 88-238 (254)
318 3ovp_A Ribulose-phosphate 3-ep 54.0 76 0.0026 26.6 9.2 62 148-213 135-197 (228)
319 3vk5_A MOEO5; TIM barrel, tran 53.7 1E+02 0.0034 27.0 10.0 98 100-214 156-257 (286)
320 3jva_A Dipeptide epimerase; en 53.4 74 0.0025 28.5 9.7 148 132-321 139-291 (354)
321 4aie_A Glucan 1,6-alpha-glucos 53.4 20 0.00067 34.1 6.1 30 229-260 77-107 (549)
322 3gnh_A L-lysine, L-arginine ca 53.3 1.1E+02 0.0037 27.2 10.9 77 132-214 165-248 (403)
323 1f6k_A N-acetylneuraminate lya 53.1 33 0.0011 30.0 7.1 78 131-212 21-105 (293)
324 2wkj_A N-acetylneuraminate lya 53.0 30 0.001 30.6 6.7 78 131-212 29-112 (303)
325 3ugs_B Undecaprenyl pyrophosph 52.8 21 0.00073 30.2 5.4 32 255-286 29-60 (225)
326 3s5o_A 4-hydroxy-2-oxoglutarat 52.8 35 0.0012 30.2 7.2 77 132-212 33-115 (307)
327 2xsa_A Ogoga, hyaluronoglucosa 52.7 63 0.0021 30.3 9.0 67 253-323 4-80 (447)
328 3na8_A Putative dihydrodipicol 52.5 14 0.00049 32.9 4.6 78 131-212 42-125 (315)
329 3oa3_A Aldolase; structural ge 52.5 91 0.0031 27.3 9.6 85 131-219 185-271 (288)
330 2agk_A 1-(5-phosphoribosyl)-5- 52.4 40 0.0014 29.0 7.3 160 132-322 36-212 (260)
331 1f76_A Dihydroorotate dehydrog 52.4 39 0.0013 30.1 7.6 78 135-214 226-319 (336)
332 3dx5_A Uncharacterized protein 52.4 43 0.0015 28.5 7.7 76 135-212 16-103 (286)
333 3gr7_A NADPH dehydrogenase; fl 52.3 29 0.00098 31.2 6.6 86 197-283 148-249 (340)
334 4aie_A Glucan 1,6-alpha-glucos 52.3 15 0.00052 34.9 5.1 59 261-320 30-98 (549)
335 3eau_A Voltage-gated potassium 52.2 1.2E+02 0.0042 26.5 10.9 164 132-326 31-214 (327)
336 3daq_A DHDPS, dihydrodipicolin 52.0 14 0.00047 32.6 4.4 77 132-212 21-103 (292)
337 3pm6_A Putative fructose-bisph 52.0 95 0.0032 27.5 9.7 132 138-284 96-252 (306)
338 1pv8_A Delta-aminolevulinic ac 52.0 16 0.00054 32.6 4.6 61 126-186 51-118 (330)
339 4hjf_A Ggdef family protein; s 52.0 46 0.0016 29.7 8.0 38 236-283 273-310 (340)
340 3iwp_A Copper homeostasis prot 51.9 40 0.0014 29.6 7.2 71 136-214 168-239 (287)
341 3lmz_A Putative sugar isomeras 51.8 1E+02 0.0035 25.6 10.4 74 135-212 31-108 (257)
342 4exq_A UPD, URO-D, uroporphyri 51.8 53 0.0018 29.8 8.4 69 142-213 205-280 (368)
343 2j13_A Polysaccharide deacetyl 51.6 29 0.00099 29.6 6.3 24 260-283 216-239 (247)
344 2dh2_A 4F2 cell-surface antige 51.6 12 0.0004 34.9 4.0 52 229-282 79-141 (424)
345 1vli_A Spore coat polysacchari 51.6 34 0.0012 31.4 6.9 62 259-321 40-120 (385)
346 3civ_A Endo-beta-1,4-mannanase 51.4 1.3E+02 0.0046 26.8 11.5 58 197-257 57-120 (343)
347 1oy0_A Ketopantoate hydroxymet 51.3 1.2E+02 0.0041 26.5 10.1 86 195-282 43-132 (281)
348 1x1o_A Nicotinate-nucleotide p 51.3 43 0.0015 29.4 7.4 64 137-214 206-269 (286)
349 3gk0_A PNP synthase, pyridoxin 51.2 99 0.0034 26.8 9.4 161 135-321 54-220 (278)
350 1m3u_A 3-methyl-2-oxobutanoate 51.2 1.2E+02 0.0041 26.2 11.5 85 195-282 26-113 (264)
351 1gte_A Dihydropyrimidine dehyd 50.8 79 0.0027 32.9 10.5 114 165-284 617-736 (1025)
352 2qf7_A Pyruvate carboxylase pr 50.7 1.2E+02 0.0042 32.0 12.0 75 133-212 708-783 (1165)
353 1ps9_A 2,4-dienoyl-COA reducta 50.7 67 0.0023 31.5 9.6 87 197-283 145-248 (671)
354 3flu_A DHDPS, dihydrodipicolin 50.6 12 0.00041 33.0 3.7 78 131-212 25-108 (297)
355 1lwj_A 4-alpha-glucanotransfer 50.5 25 0.00086 32.6 6.2 60 260-320 20-88 (441)
356 3erp_A Putative oxidoreductase 50.4 69 0.0024 28.7 8.9 167 133-326 63-247 (353)
357 3r8r_A Transaldolase; pentose 50.4 25 0.00086 29.4 5.5 113 137-282 10-129 (212)
358 1s2w_A Phosphoenolpyruvate pho 50.2 93 0.0032 27.3 9.5 84 195-282 28-113 (295)
359 2qiw_A PEP phosphonomutase; st 50.1 75 0.0026 27.3 8.7 83 195-282 29-112 (255)
360 1i4n_A Indole-3-glycerol phosp 49.8 1.2E+02 0.0042 25.9 13.5 118 134-284 61-179 (251)
361 3o0f_A Putative metal-dependen 49.6 79 0.0027 27.9 8.9 17 195-211 215-231 (301)
362 3nvt_A 3-deoxy-D-arabino-heptu 49.5 1.6E+02 0.0053 27.0 11.9 76 132-214 154-233 (385)
363 4e5t_A Mandelate racemase / mu 49.5 72 0.0025 29.2 9.0 153 132-319 151-314 (404)
364 4e4u_A Mandalate racemase/muco 49.2 79 0.0027 29.1 9.3 153 132-319 144-307 (412)
365 4dpp_A DHDPS 2, dihydrodipicol 49.0 42 0.0015 30.5 7.2 78 131-212 77-160 (360)
366 3qze_A DHDPS, dihydrodipicolin 49.0 12 0.00041 33.4 3.5 78 131-212 41-124 (314)
367 3q58_A N-acetylmannosamine-6-p 48.8 81 0.0028 26.5 8.6 120 137-284 91-211 (229)
368 1ht6_A AMY1, alpha-amylase iso 48.5 35 0.0012 31.3 6.7 60 261-320 19-87 (405)
369 3mz2_A Glycerophosphoryl diest 48.3 1.4E+02 0.0047 26.0 11.3 46 235-282 218-265 (292)
370 3si9_A DHDPS, dihydrodipicolin 48.3 12 0.0004 33.5 3.3 78 131-212 40-123 (315)
371 2v82_A 2-dehydro-3-deoxy-6-pho 48.2 1.1E+02 0.0037 24.8 14.0 69 132-212 17-86 (212)
372 1lqa_A TAS protein; TIM barrel 48.2 1.2E+02 0.0042 26.7 10.3 80 229-326 155-238 (346)
373 1y0e_A Putative N-acetylmannos 47.9 71 0.0024 26.2 8.1 73 138-213 130-204 (223)
374 3inp_A D-ribulose-phosphate 3- 47.6 69 0.0024 27.3 8.0 80 148-240 157-241 (246)
375 3fkr_A L-2-keto-3-deoxyarabona 47.5 12 0.0004 33.4 3.1 78 131-212 26-109 (309)
376 1xky_A Dihydrodipicolinate syn 47.5 13 0.00043 33.0 3.4 78 131-212 30-113 (301)
377 3igs_A N-acetylmannosamine-6-p 47.4 86 0.0029 26.3 8.6 121 137-285 91-212 (232)
378 1y0e_A Putative N-acetylmannos 47.3 1.1E+02 0.0039 24.8 12.4 126 137-284 78-205 (223)
379 3sgv_B Undecaprenyl pyrophosph 47.3 11 0.00039 32.5 2.9 80 240-327 31-116 (253)
380 1wzl_A Alpha-amylase II; pullu 47.2 23 0.00079 34.3 5.5 62 259-320 169-238 (585)
381 3ivs_A Homocitrate synthase, m 47.1 75 0.0026 29.5 8.7 74 134-212 180-254 (423)
382 3l9w_A Glutathione-regulated p 46.9 1.3E+02 0.0043 27.7 10.3 42 167-212 80-121 (413)
383 3l23_A Sugar phosphate isomera 46.8 32 0.0011 30.0 6.0 107 196-317 32-159 (303)
384 3obe_A Sugar phosphate isomera 46.7 9.1 0.00031 33.7 2.3 118 196-319 39-167 (305)
385 2hk0_A D-psicose 3-epimerase; 46.6 1.2E+02 0.0042 26.0 9.9 111 196-319 40-168 (309)
386 3qja_A IGPS, indole-3-glycerol 46.6 49 0.0017 28.7 7.0 69 138-213 173-242 (272)
387 3eul_A Possible nitrate/nitrit 46.2 88 0.003 23.2 9.7 59 169-243 76-134 (152)
388 4fxs_A Inosine-5'-monophosphat 46.0 1E+02 0.0035 29.2 9.7 68 195-282 232-299 (496)
389 2rfg_A Dihydrodipicolinate syn 45.9 15 0.00051 32.4 3.6 77 132-212 19-101 (297)
390 3fa4_A 2,3-dimethylmalate lyas 45.8 1.6E+02 0.0054 26.0 10.7 140 139-282 30-189 (302)
391 3tak_A DHDPS, dihydrodipicolin 45.8 12 0.00042 32.9 3.0 78 131-212 19-102 (291)
392 2o55_A Putative glycerophospho 45.7 1.4E+02 0.0046 25.2 10.5 116 132-281 124-242 (258)
393 1ud2_A Amylase, alpha-amylase; 45.7 40 0.0014 31.5 6.8 60 261-320 21-99 (480)
394 4af0_A Inosine-5'-monophosphat 45.4 2.1E+02 0.0073 27.4 12.2 68 195-282 282-349 (556)
395 3zss_A Putative glucanohydrola 45.4 42 0.0014 33.4 7.1 62 259-320 249-339 (695)
396 1twd_A Copper homeostasis prot 45.4 42 0.0014 28.9 6.2 70 135-213 129-198 (256)
397 1eye_A DHPS 1, dihydropteroate 45.2 1.5E+02 0.0052 25.7 11.4 71 237-317 92-170 (280)
398 1gcy_A Glucan 1,4-alpha-maltot 45.2 70 0.0024 30.4 8.5 58 263-320 37-111 (527)
399 1j0h_A Neopullulanase; beta-al 45.1 23 0.0008 34.3 5.2 62 259-320 172-241 (588)
400 1lt8_A Betaine-homocysteine me 45.0 77 0.0026 29.3 8.4 38 228-275 195-234 (406)
401 3qfe_A Putative dihydrodipicol 44.9 11 0.00039 33.6 2.6 77 132-212 30-112 (318)
402 3eb2_A Putative dihydrodipicol 44.9 15 0.0005 32.6 3.3 79 131-212 22-105 (300)
403 3q58_A N-acetylmannosamine-6-p 44.4 54 0.0018 27.6 6.7 70 137-213 139-210 (229)
404 2c6q_A GMP reductase 2; TIM ba 44.3 1.3E+02 0.0046 26.9 9.8 127 137-284 120-253 (351)
405 1hjs_A Beta-1,4-galactanase; 4 44.2 24 0.00081 31.7 4.7 53 195-255 29-81 (332)
406 2tps_A Protein (thiamin phosph 44.1 1.3E+02 0.0044 24.5 11.5 68 136-214 33-102 (227)
407 1o5k_A DHDPS, dihydrodipicolin 44.1 14 0.00048 32.8 3.1 77 132-212 31-113 (306)
408 1tqx_A D-ribulose-5-phosphate 44.1 1.4E+02 0.0048 24.9 12.8 128 132-288 16-149 (227)
409 3d0c_A Dihydrodipicolinate syn 44.1 33 0.0011 30.4 5.6 77 131-212 30-112 (314)
410 3dip_A Enolase; structural gen 44.0 1.9E+02 0.0065 26.4 11.2 151 135-321 159-322 (410)
411 3l5l_A Xenobiotic reductase A; 44.0 1.8E+02 0.0061 26.1 12.2 87 198-284 163-267 (363)
412 3ih1_A Methylisocitrate lyase; 44.0 1.7E+02 0.0058 25.8 15.5 141 168-317 16-159 (305)
413 3dhu_A Alpha-amylase; structur 43.8 38 0.0013 31.4 6.2 62 259-320 26-102 (449)
414 3zwt_A Dihydroorotate dehydrog 43.8 1E+02 0.0035 27.9 8.9 78 135-214 235-328 (367)
415 3r12_A Deoxyribose-phosphate a 43.6 1.6E+02 0.0054 25.4 10.0 88 131-225 170-259 (260)
416 3o07_A Pyridoxine biosynthesis 43.6 29 0.00098 30.4 4.9 43 170-213 187-229 (291)
417 3cyv_A URO-D, UPD, uroporphyri 43.6 81 0.0028 28.1 8.3 148 140-316 193-350 (354)
418 3vzx_A Heptaprenylglyceryl pho 43.4 1.3E+02 0.0046 25.2 9.0 71 133-214 139-209 (228)
419 1yy3_A S-adenosylmethionine:tR 43.4 53 0.0018 29.6 6.7 58 191-250 185-253 (346)
420 2ojp_A DHDPS, dihydrodipicolin 43.4 50 0.0017 28.8 6.6 78 131-212 19-102 (292)
421 2wqp_A Polysialic acid capsule 43.3 67 0.0023 29.0 7.5 68 253-321 21-110 (349)
422 3tsm_A IGPS, indole-3-glycerol 43.2 87 0.003 27.1 8.0 71 137-213 179-249 (272)
423 2xwp_A Sirohydrochlorin cobalt 43.1 1.5E+02 0.0053 25.1 12.2 138 134-286 60-201 (264)
424 1yxy_A Putative N-acetylmannos 43.1 46 0.0016 27.7 6.2 70 138-213 144-215 (234)
425 2gou_A Oxidoreductase, FMN-bin 43.0 81 0.0028 28.5 8.2 72 134-213 250-322 (365)
426 1qo2_A Molecule: N-((5-phospho 42.9 1.4E+02 0.0049 24.7 10.6 88 135-237 145-239 (241)
427 4f3h_A Fimxeal, putative uncha 42.8 61 0.0021 27.1 7.0 106 166-290 142-248 (250)
428 1gcy_A Glucan 1,4-alpha-maltot 42.8 30 0.001 33.1 5.4 29 228-258 89-117 (527)
429 2z1k_A (NEO)pullulanase; hydro 42.7 13 0.00043 35.0 2.7 86 164-269 47-133 (475)
430 3hbl_A Pyruvate carboxylase; T 42.5 2.3E+02 0.0079 29.9 12.5 75 133-212 691-766 (1150)
431 2dqw_A Dihydropteroate synthas 42.5 1.6E+02 0.0053 25.9 9.6 62 254-320 126-195 (294)
432 2qw5_A Xylose isomerase-like T 42.5 78 0.0027 27.7 7.9 115 196-320 28-182 (335)
433 2wc7_A Alpha amylase, catalyti 42.4 23 0.00078 33.4 4.5 62 259-320 52-121 (488)
434 1jub_A Dihydroorotate dehydrog 42.2 43 0.0015 29.4 6.1 78 135-214 173-272 (311)
435 3h5d_A DHDPS, dihydrodipicolin 42.0 44 0.0015 29.6 6.1 79 130-212 24-109 (311)
436 2xvy_A Chelatase, putative; me 42.0 1.6E+02 0.0054 24.9 10.0 164 136-324 67-247 (269)
437 2guy_A Alpha-amylase A; (beta- 41.9 24 0.00082 33.1 4.5 62 259-320 39-116 (478)
438 1lwj_A 4-alpha-glucanotransfer 41.8 15 0.00052 34.1 3.1 37 229-267 67-104 (441)
439 3qas_B Undecaprenyl pyrophosph 41.7 17 0.00057 31.5 3.1 25 262-286 47-71 (253)
440 2aaa_A Alpha-amylase; glycosid 41.6 26 0.00087 33.0 4.7 62 259-320 39-116 (484)
441 3lut_A Voltage-gated potassium 41.6 1.5E+02 0.0051 26.6 9.8 164 133-326 66-248 (367)
442 1zja_A Trehalulose synthase; s 41.6 34 0.0011 32.9 5.6 61 260-320 29-98 (557)
443 1zco_A 2-dehydro-3-deoxyphosph 41.1 1.7E+02 0.0058 25.0 10.0 108 133-249 36-159 (262)
444 3edf_A FSPCMD, cyclomaltodextr 41.1 38 0.0013 33.0 5.9 62 259-320 144-217 (601)
445 3igs_A N-acetylmannosamine-6-p 41.0 73 0.0025 26.8 7.1 69 137-213 139-210 (232)
446 3q94_A Fructose-bisphosphate a 40.9 1.5E+02 0.0052 25.8 9.3 78 137-217 162-240 (288)
447 2qul_A D-tagatose 3-epimerase; 40.9 1.4E+02 0.0048 25.0 9.2 76 196-282 20-107 (290)
448 3g8r_A Probable spore coat pol 40.7 2E+02 0.007 25.8 13.9 73 134-212 21-117 (350)
449 3rr1_A GALD, putative D-galact 40.7 80 0.0027 29.0 7.9 78 132-210 125-209 (405)
450 1tv5_A Dhodehase, dihydroorota 40.7 1.1E+02 0.0038 28.5 8.8 77 135-213 312-402 (443)
451 3ih1_A Methylisocitrate lyase; 40.7 1.9E+02 0.0065 25.5 11.9 137 139-282 41-194 (305)
452 3fa4_A 2,3-dimethylmalate lyas 40.7 1.9E+02 0.0065 25.4 14.2 85 195-282 27-114 (302)
453 3hpd_A Hydroxyethylthiazole ki 40.6 1E+02 0.0035 26.6 8.0 150 167-323 2-167 (265)
454 3vni_A Xylose isomerase domain 40.6 1.7E+02 0.0056 24.7 12.4 72 135-211 18-106 (294)
455 2g0w_A LMO2234 protein; putati 40.5 1.7E+02 0.0058 24.9 10.3 16 197-212 40-55 (296)
456 2z1k_A (NEO)pullulanase; hydro 40.4 34 0.0011 32.0 5.3 62 259-320 46-115 (475)
457 4djd_C C/Fe-SP, corrinoid/iron 40.3 1.5E+02 0.0052 27.6 9.6 96 166-268 140-248 (446)
458 1ht6_A AMY1, alpha-amylase iso 40.1 21 0.00073 32.7 3.8 29 228-258 65-93 (405)
459 3paj_A Nicotinate-nucleotide p 39.8 1.6E+02 0.0055 26.2 9.3 86 169-284 218-304 (320)
460 2vc6_A MOSA, dihydrodipicolina 39.7 19 0.00067 31.5 3.3 77 132-212 19-101 (292)
461 2pcq_A Putative dihydrodipicol 39.7 44 0.0015 29.1 5.6 44 229-274 72-117 (283)
462 1m3u_A 3-methyl-2-oxobutanoate 39.7 1.8E+02 0.0063 25.0 10.2 13 196-208 120-132 (264)
463 1ujp_A Tryptophan synthase alp 39.6 1.8E+02 0.0062 24.9 14.3 16 228-243 73-88 (271)
464 3qvq_A Phosphodiesterase OLEI0 39.6 1.6E+02 0.0056 24.6 9.3 105 137-281 130-236 (252)
465 3tva_A Xylose isomerase domain 39.6 1.7E+02 0.0058 24.6 11.7 46 138-188 25-70 (290)
466 3tdn_A FLR symmetric alpha-bet 39.4 6.2 0.00021 33.6 0.0 73 135-213 157-229 (247)
467 4a29_A Engineered retro-aldol 39.4 71 0.0024 27.5 6.7 68 137-213 163-233 (258)
468 2v9d_A YAGE; dihydrodipicolini 39.3 14 0.00049 33.3 2.4 78 131-212 49-132 (343)
469 1mzh_A Deoxyribose-phosphate a 39.2 1.6E+02 0.0056 24.3 12.2 125 132-282 18-151 (225)
470 1wv2_A Thiazole moeity, thiazo 39.2 1.7E+02 0.0057 25.3 8.9 127 132-285 85-218 (265)
471 4h8e_A Undecaprenyl pyrophosph 39.0 8.4 0.00029 33.3 0.8 30 257-286 49-78 (256)
472 1ypf_A GMP reductase; GUAC, pu 38.8 2E+02 0.007 25.4 10.1 127 136-284 107-240 (336)
473 1yad_A Regulatory protein TENI 38.7 85 0.0029 25.7 7.1 72 138-213 121-192 (221)
474 1vyr_A Pentaerythritol tetrani 38.6 56 0.0019 29.6 6.4 71 135-213 252-323 (364)
475 2ztj_A Homocitrate synthase; ( 38.4 96 0.0033 28.2 7.9 75 132-212 143-220 (382)
476 1ccw_A Protein (glutamate muta 38.4 66 0.0023 24.5 5.9 92 172-279 22-115 (137)
477 1i60_A IOLI protein; beta barr 38.1 1.6E+02 0.0053 24.5 9.0 20 135-154 15-34 (278)
478 2bdq_A Copper homeostasis prot 38.1 90 0.0031 26.3 7.0 72 134-212 133-206 (224)
479 2dh2_A 4F2 cell-surface antige 38.1 26 0.0009 32.4 4.1 61 260-320 33-100 (424)
480 1ji1_A Alpha-amylase I; beta/a 38.1 45 0.0015 32.6 6.0 60 259-319 187-260 (637)
481 1p0k_A Isopentenyl-diphosphate 38.0 2.1E+02 0.0073 25.3 10.8 133 138-283 77-209 (349)
482 3o63_A Probable thiamine-phosp 37.9 41 0.0014 28.7 5.0 73 138-213 146-219 (243)
483 3pm6_A Putative fructose-bisph 37.9 1.5E+02 0.0052 26.2 8.7 81 138-219 175-257 (306)
484 2qgy_A Enolase from the enviro 37.8 2.3E+02 0.0078 25.6 10.6 149 132-322 149-303 (391)
485 3fwz_A Inner membrane protein 37.7 1.3E+02 0.0043 22.5 8.8 50 169-222 85-135 (140)
486 1f75_A Undecaprenyl pyrophosph 37.7 17 0.00057 31.4 2.4 25 262-286 50-74 (249)
487 2p10_A MLL9387 protein; putati 37.6 1.9E+02 0.0066 25.2 9.2 75 137-212 173-258 (286)
488 3i65_A Dihydroorotate dehydrog 37.6 87 0.003 29.0 7.5 77 135-213 284-374 (415)
489 4aef_A Neopullulanase (alpha-a 37.5 25 0.00086 34.5 4.1 62 259-320 235-304 (645)
490 2wc7_A Alpha amylase, catalyti 37.5 14 0.00047 34.9 2.1 38 230-269 101-139 (488)
491 1gve_A Aflatoxin B1 aldehyde r 37.5 1.2E+02 0.0041 26.6 8.3 158 133-326 21-198 (327)
492 2pz0_A Glycerophosphoryl diest 37.5 1E+02 0.0036 25.9 7.6 105 137-281 132-237 (252)
493 2x7v_A Probable endonuclease 4 37.4 1.6E+02 0.0056 24.6 9.0 131 135-272 13-167 (287)
494 2agk_A 1-(5-phosphoribosyl)-5- 37.4 45 0.0016 28.6 5.3 93 135-239 158-257 (260)
495 3bdk_A D-mannonate dehydratase 37.1 53 0.0018 30.1 5.9 83 195-286 32-126 (386)
496 1v08_A Beta-glucosidase; glyco 37.1 78 0.0027 30.2 7.3 57 196-255 81-141 (512)
497 1mdl_A Mandelate racemase; iso 37.0 2.2E+02 0.0076 25.2 10.4 68 198-280 151-220 (359)
498 1g94_A Alpha-amylase; beta-alp 37.0 25 0.00087 32.7 3.8 28 229-258 62-89 (448)
499 1ep3_A Dihydroorotate dehydrog 37.0 1.2E+02 0.0041 26.2 8.2 77 134-213 176-270 (311)
500 3mqt_A Mandelate racemase/muco 36.9 2.4E+02 0.0082 25.5 11.4 147 135-319 155-307 (394)
No 1
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.97 E-value=2.8e-30 Score=241.80 Aligned_cols=227 Identities=18% Similarity=0.281 Sum_probs=187.2
Q ss_pred hhhhhccCCcchHH--HHHHHhcC---CHHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCC-
Q 020304 55 WLRQKAPQGQRFQE--VKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP- 128 (328)
Q Consensus 55 ~i~~~~~~g~~~~~--~~~~l~~~---~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~- 128 (328)
.|.+|+.+|++++. +..+++.. +++.|++.|+ .++++++| +.+..++++++|++|+.+|.||+++.....
T Consensus 12 ~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~--~~r~~~~g--~~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~ 87 (350)
T 3t7v_A 12 SLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAAR--KVRDHYFG--NRVFLNCFIYFSTYCKNQCSFCYYNCRNEIN 87 (350)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHH--HHHHHHHT--TEEEEEEEEEEECCCCCCCTTCTTCTTSCCC
T ss_pred HHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHH--HHHHHHCC--CEEEEEEeeecCCCcCCCCCcCCCcCcCCCC
Confidence 46688889988755 66677643 5778999999 99988887 467778889999999999999999765422
Q ss_pred -CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 129 -APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 129 -~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
..++++++.+.++++.+.|+++++|+||+.|.+. .+.+++.++++.+++.+ ++.+.+ +++ .++++.++.|+++|+
T Consensus 88 ~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~-~~~~~~~~l~~~ik~~~-~i~i~~-s~g-~~~~e~l~~L~~aG~ 163 (350)
T 3t7v_A 88 RYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYY-EDPNRFVELVQIVKEEL-GLPIMI-SPG-LMDNATLLKAREKGA 163 (350)
T ss_dssp CCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHH-HSTHHHHHHHHHHHHHH-CSCEEE-ECS-SCCHHHHHHHHHTTE
T ss_pred ceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccc-cCHHHHHHHHHHHHhhc-CceEEE-eCC-CCCHHHHHHHHHcCC
Confidence 2356788888899888999999999998854331 01488999999999865 566643 343 469999999999999
Q ss_pred cEEeechhhH-HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 208 DVFAHNIETV-KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 208 ~~i~~~~et~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+++.+++|++ +++++.++ +++++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++++.+++++|.
T Consensus 164 ~~i~i~lEt~~~~~~~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~ 240 (350)
T 3t7v_A 164 NFLALYQETYDTELYRKLR-VGQSFDGRVNARRFAKQ--QGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFL 240 (350)
T ss_dssp EEEECCCBCSCHHHHHHHS-TTCCHHHHHHHHHHHHH--HTCEEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECC
T ss_pred CEEEEeeecCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCeEccceEeecCCCHHHHHHHHHHHHhCCCCEEEeccee
Confidence 9999999998 45777776 47899999999999999 99999999999999999999999999999999999998777
Q ss_pred C-C-CCCC
Q 020304 287 Q-P-TPLH 292 (328)
Q Consensus 287 ~-P-Tp~~ 292 (328)
. | ||++
T Consensus 241 p~~gT~l~ 248 (350)
T 3t7v_A 241 PQEGTPLE 248 (350)
T ss_dssp CCTTSTTT
T ss_pred eCCCCcCc
Confidence 3 2 7765
No 2
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.96 E-value=1.6e-27 Score=222.61 Aligned_cols=240 Identities=24% Similarity=0.345 Sum_probs=191.6
Q ss_pred hhhhccCCcch--HHHHHHHhcCC---HHHHHHhcCCCCccccccCCCCceeeEEEEEeCCCCCCCCCCCccCCCCCCC-
Q 020304 56 LRQKAPQGQRF--QEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPA- 129 (328)
Q Consensus 56 i~~~~~~g~~~--~~~~~~l~~~~---l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~t~gC~~~C~FC~~~~~~~~~- 129 (328)
|.+|+.+ +.+ .++..+++..+ ++.|+..|+ .+++.++| +.+..+..+++|++|+++|.||+++...+..
T Consensus 6 i~~k~~~-~~l~~~e~~~ll~~~~~~~~~~l~~~A~--~ir~~~~g--~~v~~~~~i~~t~~C~~~C~fC~~~~~~~~~~ 80 (348)
T 3iix_A 6 ILEKLER-REFTREVLKEALSINDRGFNEALFKLAD--EIRRKYVG--DEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLK 80 (348)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHC--SEEEEEEEEEEECCCSCCCTTCTTCTTCCSSC
T ss_pred HHHHHHh-CCCCHHHHHHHHcCCCHHHHHHHHHHHH--HHHHHHcC--CEEEEEEEeEecCCcCCcCccCCCCCCCCCcC
Confidence 3455555 555 34677777654 667889999 89888886 4677788899999999999999987654322
Q ss_pred --CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 130 --PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 130 --~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.++++++.+.++++.+.|++.++|+||+++.+. .+++.++++.+++. ++.+.+ +++ .++++.++.|+++|+
T Consensus 81 ~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~---~~~~~~li~~i~~~--~~~i~~-s~g-~l~~e~l~~L~~ag~ 153 (348)
T 3iix_A 81 RYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXM---PDVISDIVKEIKKM--GVAVTL-SLG-EWPREYYEKWKEAGA 153 (348)
T ss_dssp CCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGT---THHHHHHHHHHHTT--SCEEEE-ECC-CCCHHHHHHHHHHTC
T ss_pred ceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCcc---HHHHHHHHHHHHhc--CceEEE-ecC-CCCHHHHHHHHHhCC
Confidence 346678888899999999999999999865554 48999999999987 677753 343 459999999999999
Q ss_pred cEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 208 DVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 208 ~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
+.+.+++|+.+ +.++.++ ++.++++++++++.+++ .|+.+++++|+|+ |||.+++.++++++++++++.+.+++|
T Consensus 154 ~~v~i~let~~~~~~~~i~-~~~~~~~~~~~i~~~~~--~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~ 230 (348)
T 3iix_A 154 DRYLLRHETANPVLHRKLR-PDTSFENRLNCLLTLKE--LGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF 230 (348)
T ss_dssp CEEECCCBCSCHHHHHHHS-TTSCHHHHHHHHHHHHH--TTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEEC
T ss_pred CEEeeeeeeCCHHHHHHhC-CCcCHHHHHHHHHHHHH--hCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeee
Confidence 99999999994 5777776 35699999999999999 9999999999999 999999999999999999999999777
Q ss_pred cC-C-CCCCcccCCCCCHHHHHHHHHHHH
Q 020304 286 LQ-P-TPLHLTVKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 286 l~-P-Tp~~~~~~~~~~~~~~~~l~~~~~ 312 (328)
.. | ||+. ..+..+.+++.++.++++
T Consensus 231 ~p~~gt~l~--~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 231 IPHPDTPLA--NEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp CCCTTSTTT--TSCCCCHHHHHHHHHHHH
T ss_pred ecCCCCCcc--cCCCCCHHHHHHHHHHHH
Confidence 62 2 7765 234456666665555554
No 3
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.94 E-value=1.8e-25 Score=210.50 Aligned_cols=228 Identities=17% Similarity=0.234 Sum_probs=178.8
Q ss_pred HHHHhcCCHHHHHHhcCCCCccccccCCCCceeeEEEEEe-CCCCCCCCCCCccCCCCC-----CCCCCCCchHHHHHHH
Q 020304 70 KESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL-GDTCTRGCRFCAVKTSRN-----PAPPDPMEPENTAKAI 143 (328)
Q Consensus 70 ~~~l~~~~l~~l~~~a~~p~i~~~~~~~~~~~~~~~~i~~-t~gC~~~C~FC~~~~~~~-----~~~~~~~ei~~~~~~~ 143 (328)
..+++ .++..|+..|+ .+++..++ ++.+..+.++++ |++|+++|.||.++.... ...++++++.+.++++
T Consensus 36 ~~l~~-~~~~~L~~~A~--~~~~~~~~-~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~ 111 (369)
T 1r30_A 36 TELFE-KPLLDLLFEAQ--QVHRQHFD-PRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKA 111 (369)
T ss_dssp HHHHH-SCHHHHHHHHH--HHHHHHSC-TTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHH--HHHHHhcC-CCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHH
Confidence 33444 46778888888 88777664 246777888886 999999999999986421 1224567888888888
Q ss_pred HHCCCcEEEEEecc--CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHH
Q 020304 144 ASWGVDYIVLTSVD--RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ 221 (328)
Q Consensus 144 ~~~G~~~i~l~gg~--~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~ 221 (328)
.+.|++.|+|+||. +..+ ..+++.++++.+++. ++.+. .+++. ++++.++.|+++|++++.+++++.++.+
T Consensus 112 ~~~g~~~i~~~gg~~~p~~~---~~~~l~~ll~~ik~~--g~~i~-~t~G~-l~~e~l~~L~~aGvd~v~i~les~~e~~ 184 (369)
T 1r30_A 112 KAAGSTRFCMGAAWKNPHER---DMPYLEQMVQGVKAM--GLEAC-MTLGT-LSESQAQRLANAGLDYYNHNLDTSPEFY 184 (369)
T ss_dssp HHTTCSEEEEEECCSSCCTT---THHHHHHHHHHHHHT--TSEEE-EECSS-CCHHHHHHHHHHCCCEEECCCBSCHHHH
T ss_pred HHcCCcEEEEEeCCCCCCcC---CHHHHHHHHHHHHHc--CCeEE-EecCC-CCHHHHHHHHHCCCCEEeecCcCCHHHH
Confidence 88999999998764 3322 368999999999987 55664 46665 5999999999999999999999955577
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC--CCEEeeecccC-C-CCCCcccCC
Q 020304 222 RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID--VDILTLGQYLQ-P-TPLHLTVKE 297 (328)
Q Consensus 222 ~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~--~~~i~i~~~l~-P-Tp~~~~~~~ 297 (328)
+.++ +++++++++++++.+++ .|+.+++++|+|+|||.+++.++++++++++ ++.++++.|.. | |++. ..+
T Consensus 185 ~~i~-~~~~~~~~l~~i~~a~~--~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~--~~~ 259 (369)
T 1r30_A 185 GNII-TTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLA--DND 259 (369)
T ss_dssp HHHC-CSSCHHHHHHHHHHHHH--HHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTS--SCC
T ss_pred HHhC-CCCCHHHHHHHHHHHHH--cCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCC--CCC
Confidence 6666 36899999999999999 8999999999999999999999999999998 88999976652 2 6664 234
Q ss_pred CCCHHHHHHHHHHHHh
Q 020304 298 YVTPEKFDFWKAYGES 313 (328)
Q Consensus 298 ~~~~~~~~~l~~~~~~ 313 (328)
..+.+++.++.++++.
T Consensus 260 ~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 260 DVDAFDFIRTIAVARI 275 (369)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5667776666666654
No 4
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.91 E-value=5.8e-24 Score=195.10 Aligned_cols=207 Identities=14% Similarity=0.243 Sum_probs=143.7
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC-CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA-PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~-~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~ 179 (328)
..+++.+++||+++|+||.++..++.. .++++++.++++.+.+.|++++.|+|++...+..+ ..+.+.++++.+++.
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~ 83 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSL 83 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTS
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhc
Confidence 678899999999999999998765433 35667888999999889999999998765444210 025689999999876
Q ss_pred CCCcE-EEEE-eCCCCCCHHHHHHHHHcC--CcEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Q 020304 180 KPDIM-VECL-TSDFRGDLRAVETLVHSG--LDVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI 254 (328)
Q Consensus 180 ~~~~~-i~~~-t~~~~~~~e~l~~L~~aG--~~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ 254 (328)
+++. +... ++...++++.++.|+++| ++++.+++|+.+ ++.+.++ ++++.++++++++.+++.++|+.+.+++
T Consensus 84 -~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~gi~i~~~~ 161 (304)
T 2qgq_A 84 -NGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFPDAVLRTSI 161 (304)
T ss_dssp -SSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 4553 3332 333446999999999999 999999999975 4655555 4789999999999999977899999999
Q ss_pred EEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CCCCcccCCCCCH----HHHHHHHHHHH
Q 020304 255 MLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TPLHLTVKEYVTP----EKFDFWKAYGE 312 (328)
Q Consensus 255 ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp~~~~~~~~~~~----~~~~~l~~~~~ 312 (328)
|+|+ |||.+++.++++++++++++.+.+++|.. | ||++. ....+++ +.++.+.++..
T Consensus 162 IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~-~~~~v~~~~~~~r~~~l~~~~~ 225 (304)
T 2qgq_A 162 IVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFN-LKEKVDPEMAKRRQEELLLLQA 225 (304)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC------------CCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHh-CcCCCCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999988772 4 77652 2234553 33444444443
No 5
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.88 E-value=4.8e-22 Score=192.15 Aligned_cols=217 Identities=14% Similarity=0.236 Sum_probs=161.3
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCCC----CCCCCchHHHHHHHHHC----CCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNPA----PPDPMEPENTAKAIASW----GVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~~----~~~~~ei~~~~~~~~~~----G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
...++.+ ++|+.+|.||.++...... ..+.+.+.++++.+.+. ++..++|+||++..++ .+++.++++
T Consensus 53 ~~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~---~~~l~~ll~ 128 (457)
T 1olt_A 53 LSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLMK 128 (457)
T ss_dssp EEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHHH
T ss_pred eEEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCC---HHHHHHHHH
Confidence 3444444 4699999999997632111 12334555666655443 3568888888865444 589999999
Q ss_pred HHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-
Q 020304 175 AMKKQKP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLI- 249 (328)
Q Consensus 175 ~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~- 249 (328)
.+++.++ +..+.+.++...++++.++.|+++|++++++|+|++++ ..+.++ +++++++++++++.+++ .|+.
T Consensus 129 ~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~-R~~~~~~~~~ai~~~r~--~G~~~ 205 (457)
T 1olt_A 129 LLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHARE--IGFTS 205 (457)
T ss_dssp HHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHH--TTCCS
T ss_pred HHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC-CCCCHHHHHHHHHHHHH--cCCCc
Confidence 9998643 24555556655569999999999999999999999854 555554 47999999999999999 9998
Q ss_pred EEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc-CC-CCCCccc--C-CCCCHH----HHHHHHHHHHhcCCcee
Q 020304 250 TKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL-QP-TPLHLTV--K-EYVTPE----KFDFWKAYGESIGFRYV 319 (328)
Q Consensus 250 v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l-~P-Tp~~~~~--~-~~~~~~----~~~~l~~~~~~~G~~~~ 319 (328)
+++++|+|+ |||.+++.++++++.+++++.+.++++. .| |+..... . ...+.+ .++.+.+...+.|+.++
T Consensus 206 v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~y 285 (457)
T 1olt_A 206 TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFI 285 (457)
T ss_dssp CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999999 9999999999999999999999998776 23 4332111 1 112222 35556677788999999
Q ss_pred eeccccc
Q 020304 320 ASGPLVS 326 (328)
Q Consensus 320 ~~g~~~~ 326 (328)
++++++|
T Consensus 286 eis~fa~ 292 (457)
T 1olt_A 286 GMDHFAR 292 (457)
T ss_dssp ETTEEEC
T ss_pred EechhcC
Confidence 9999886
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.79 E-value=1.6e-18 Score=152.97 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=147.0
Q ss_pred EEEeCCCCCCCCCCCccCCCCC---CCCCCCCchHHHHHHHHHC---CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~---~~~~~~~ei~~~~~~~~~~---G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
.+..|++||.+|.||..+.... ...++++++.+.++.+.+. +...|.|+||+|. +. .+.+.++++.+++.
T Consensus 22 ~~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~-l~---~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAI-LQ---AEFVRDWFRACKKE 97 (245)
T ss_dssp EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGG-GG---HHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcC-CC---HHHHHHHHHHHHHc
Confidence 3456889999999998864321 1123455666666655443 4689999998863 32 35578999999986
Q ss_pred CCCcEEEEEeCCCCC-CHHHHHHHHHcCCcEEeechhhH-HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-
Q 020304 180 KPDIMVECLTSDFRG-DLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML- 256 (328)
Q Consensus 180 ~~~~~i~~~t~~~~~-~~e~l~~L~~aG~~~i~~~~et~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv- 256 (328)
++.+.+.||+... +++.++.|.++ ++.+.+++++. ++.++.++ +.++++++++++.+++ .|+.+...+++
T Consensus 98 --~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~--~~~~~~~~~~i~~l~~--~g~~v~i~~~~~ 170 (245)
T 3c8f_A 98 --GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFAKYLAN--KNVKVWIRYVVV 170 (245)
T ss_dssp --TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHH--SSCSHHHHHHHHHHHH--HTCCEEEEEEEC
T ss_pred --CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhcc--CCCHHHHHHHHHHHHh--cCCEEEEEEeec
Confidence 5667677777542 67888889888 89999999997 45666666 3456999999999999 89887776655
Q ss_pred -EcCCCHHHHHHHHHHHHhCCC-CEEeeecccCCCCCC----------cccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 257 -GLGESDDDLKEAMADLRSIDV-DILTLGQYLQPTPLH----------LTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 257 -GlgEt~e~~~~~l~~l~~l~~-~~i~i~~~l~PTp~~----------~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
|++++.+++.+++++++++++ ..+.+.++. |++.. +...+..+.++++++.+.+++.|++.+
T Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 244 (245)
T 3c8f_A 171 PGWSDDDDSAHRLGEFTRDMGNVEKIELLPYH-ELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM 244 (245)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCEEEEEEEECC-CCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCceeEEEecc-ccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence 334788999999999999996 667776554 42211 111235577889999999999999865
No 7
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.78 E-value=5.7e-18 Score=157.46 Aligned_cols=176 Identities=15% Similarity=0.204 Sum_probs=136.4
Q ss_pred eEEEEEeCCCCCCCCCCCccCC----CC---C-CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHH
Q 020304 103 TATIMLLGDTCTRGCRFCAVKT----SR---N-PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~----~~---~-~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~ 174 (328)
....+.+|++||.+|.||.... .. . ...++.+++.+.++.+.+.|++.|.|+||+|. +. ..+.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPl-l~----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPL-MR----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGG-GS----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc-ch----hhHHHHHH
Confidence 4566778999999999998764 11 1 12345677888888888999999999999863 32 34778899
Q ss_pred HHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 175 AMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 175 ~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
.+++......+.+.||+..+ .+.++.|+++|++.+.+++++.+ +.++.+++.+.++++++++++.+++ .|+.+..+
T Consensus 89 ~~~~~~~~~~i~i~TNG~ll-~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~--~g~~v~i~ 165 (340)
T 1tv8_A 89 KLNQIDGIEDIGLTTNGLLL-KKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATS--IGLNVKVN 165 (340)
T ss_dssp HHTTCTTCCEEEEEECSTTH-HHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHH--TTCEEEEE
T ss_pred HHHhCCCCCeEEEEeCccch-HHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHH--CCCCEEEE
Confidence 88876321266667787664 56899999999999999999975 4565555322389999999999999 99998888
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 254 IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
+++.-|++.+++.+++++++++|++ +.+..++ |
T Consensus 166 ~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~-p 198 (340)
T 1tv8_A 166 VVIQKGINDDQIIPMLEYFKDKHIE-IRFIEFM-D 198 (340)
T ss_dssp EEECTTTTGGGHHHHHHHHHHTTCC-EEEEECC-C
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCe-EEEEEee-E
Confidence 8874488999999999999999998 4443454 6
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.70 E-value=3.7e-16 Score=145.36 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=143.1
Q ss_pred EeC-CCCCCCCCCCccCCCCC------CCCCCCCchHHHHHHHHH--------------------CCCcEEEEE-eccCC
Q 020304 108 LLG-DTCTRGCRFCAVKTSRN------PAPPDPMEPENTAKAIAS--------------------WGVDYIVLT-SVDRD 159 (328)
Q Consensus 108 ~~t-~gC~~~C~FC~~~~~~~------~~~~~~~ei~~~~~~~~~--------------------~G~~~i~l~-gg~~~ 159 (328)
..+ +|||.+|.||..+.... ....+++++.+.+....+ ..++.|.|+ ||+|
T Consensus 75 ~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP- 153 (342)
T 2yx0_A 75 TPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP- 153 (342)
T ss_dssp ESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG-
T ss_pred EeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc-
Confidence 345 79999999999864321 122344566554443321 124679997 6765
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC--CcEEeechhhH-HHHHhhhcCC--CCCHHHH
Q 020304 160 DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETV-KRLQRIVRDP--RAGYEQS 234 (328)
Q Consensus 160 ~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG--~~~i~~~~et~-~~~~~~~~~~--~~~~~~~ 234 (328)
.+. ..+.++++.+++. ++.+.+.|++.. ++.++.|+++| ++.+.+++++. ++.++.++++ +.+++++
T Consensus 154 ll~----~~l~~ll~~~~~~--g~~i~l~TNG~~--~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~ 225 (342)
T 2yx0_A 154 MLY----PYMGDLVEEFHKR--GFTTFIVTNGTI--PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERI 225 (342)
T ss_dssp GGS----TTHHHHHHHHHHT--TCEEEEEECSCC--HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHH
T ss_pred cch----hhHHHHHHHHHHC--CCcEEEEcCCCc--HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHH
Confidence 343 3688899999886 678877787764 88999999998 99999999987 4466555522 4679999
Q ss_pred HHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccC-CCC-CCcccCCCCCHHHHHHHHHHHH
Q 020304 235 LEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ-PTP-LHLTVKEYVTPEKFDFWKAYGE 312 (328)
Q Consensus 235 l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp-~~~~~~~~~~~~~~~~l~~~~~ 312 (328)
+++++.+++ .|+.+...+++..|++.+++.++++++++++++.+.+.+|.. |++ ..+......+.+++.++.+.+.
T Consensus 226 ~~~i~~l~~--~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~ 303 (342)
T 2yx0_A 226 LRFLELMRD--LPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALV 303 (342)
T ss_dssp HHHHHHHTT--CSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHH
Confidence 999999999 899988888885588888899999999999999888765652 211 1111223456777777777666
Q ss_pred hc--CCceeeeccc
Q 020304 313 SI--GFRYVASGPL 324 (328)
Q Consensus 313 ~~--G~~~~~~g~~ 324 (328)
+. +++....++.
T Consensus 304 ~~l~~~~I~~~~~~ 317 (342)
T 2yx0_A 304 KHLPGYHIEDEYEP 317 (342)
T ss_dssp TTCTTEEEEEEEGG
T ss_pred HhccCCceeecccc
Confidence 54 5555333443
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.62 E-value=2e-15 Score=138.53 Aligned_cols=206 Identities=14% Similarity=0.151 Sum_probs=128.7
Q ss_pred eEEEEEeC-CCCCCCCCCCccCCCCC----------CCCCCCCchHHHHHHHHH---------------------CCCcE
Q 020304 103 TATIMLLG-DTCTRGCRFCAVKTSRN----------PAPPDPMEPENTAKAIAS---------------------WGVDY 150 (328)
Q Consensus 103 ~~~~i~~t-~gC~~~C~FC~~~~~~~----------~~~~~~~ei~~~~~~~~~---------------------~G~~~ 150 (328)
.+..+.+| .+||++|.||..+.... ....+++++.+.+.+..+ ...+.
T Consensus 51 ~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~ 130 (311)
T 2z2u_A 51 RCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKH 130 (311)
T ss_dssp GEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCE
T ss_pred CeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCE
Confidence 34556778 79999999998664211 122445566544433211 12467
Q ss_pred EEEE-eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcCC-
Q 020304 151 IVLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRDP- 227 (328)
Q Consensus 151 i~l~-gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~- 227 (328)
+.|+ ||+| .+. +++.++++.+++. ++.+.+.||+.. ++.++.| |++.+.+++++.++ .++.+++.
T Consensus 131 i~~s~gGEP-ll~----~~l~~li~~~~~~--g~~~~l~TNG~~--~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~ 198 (311)
T 2z2u_A 131 VAISLSGEP-TLY----PYLDELIKIFHKN--GFTTFVVSNGIL--TDVIEKI---EPTQLYISLDAYDLDSYRRICGGK 198 (311)
T ss_dssp EEECSSSCG-GGS----TTHHHHHHHHHHT--TCEEEEEECSCC--HHHHHHC---CCSEEEEECCCSSTTTC----CCC
T ss_pred EEEeCCcCc-cch----hhHHHHHHHHHHC--CCcEEEECCCCC--HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCc
Confidence 8998 6775 342 4588999999887 677777787754 5665555 88999999999754 66555522
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC---CCCCcccCCCCCHHHH
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP---TPLHLTVKEYVTPEKF 304 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P---Tp~~~~~~~~~~~~~~ 304 (328)
+.++++++++++.+++ .| .+...+++..|.+. ++.++++++++++++.+.+.+|. | ++..+......+++++
T Consensus 199 ~~~~~~v~~~i~~l~~--~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~-p~g~~~~~~~~~~~~~~~e~ 273 (311)
T 2z2u_A 199 KEYWESILNTLDILKE--KK-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYM-HVGYSQKRLKKEDMLQHDEI 273 (311)
T ss_dssp HHHHHHHHHHHHHHTT--SS-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHH
T ss_pred cchHHHHHHHHHHHHh--cC-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeE-EccccccccccccCCCHHHH
Confidence 2579999999999999 88 77766665447777 89999999999999999987676 5 3322212245677777
Q ss_pred HHHHHHHHh-cCCceeeecccc
Q 020304 305 DFWKAYGES-IGFRYVASGPLV 325 (328)
Q Consensus 305 ~~l~~~~~~-~G~~~~~~g~~~ 325 (328)
.++.+...+ .|+....-+|..
T Consensus 274 ~~~~~~l~~~~g~~~~~~~~~~ 295 (311)
T 2z2u_A 274 LKLAKMLDENSSYKLIDDSEDS 295 (311)
T ss_dssp HHHHHHHHTSSSEEEEEEEGGG
T ss_pred HHHHHHHHHhcCceEEeccCcc
Confidence 777666665 788776444433
No 10
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.55 E-value=1e-13 Score=130.51 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=136.8
Q ss_pred eCCCCCCCCCCCccCCCCCCCCCCCCchHHHHHHHHH----------CCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHH
Q 020304 109 LGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----------WGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMK 177 (328)
Q Consensus 109 ~t~gC~~~C~FC~~~~~~~~~~~~~~ei~~~~~~~~~----------~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik 177 (328)
.+.|||.+|.||..........++++||.+.+..+.. .++..|+|+| |+| .+. .+.+.++++.++
T Consensus 121 sq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEP-Lln---~d~v~~~i~~lk 196 (404)
T 3rfa_A 121 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP-LLN---LNNVVPAMEIML 196 (404)
T ss_dssp CEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCG-GGC---HHHHHHHHHHHH
T ss_pred eCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCc-ccC---HHHHHHHHHHHH
Confidence 4689999999998765322234677788776665432 2478899995 664 343 578999999998
Q ss_pred HhCCCc-----EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH-HHhhhcC--CCCCHHHHHHHHH-HHHHhCCCC
Q 020304 178 KQKPDI-----MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR-LQRIVRD--PRAGYEQSLEVLK-HAKLSKKGL 248 (328)
Q Consensus 178 ~~~~~~-----~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~--~~~~~~~~l~~i~-~~~~~~~Gi 248 (328)
+.. ++ .+.+.|++.. +.++.|.+.+...+.+++.+.++ .++.+.+ ++.+.++++++++ .+.+ .|.
T Consensus 197 ~~~-Gl~~s~r~itlsTnG~~---p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~--~g~ 270 (404)
T 3rfa_A 197 DDF-GFGLSKRRVTLSTSGVV---PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEK--SNA 270 (404)
T ss_dssp STT-TTCCCGGGEEEEESCCH---HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHH--CTT
T ss_pred hhc-CcCcCCCceEEECCCcH---HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHH--hCC
Confidence 742 55 6666677743 45778888765567788887754 5544431 2578999999995 4456 565
Q ss_pred ---eEEEe--EEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 249 ---ITKSS--IMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 249 ---~v~~~--~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+... +|-|+.++++++.+++++++++++ .+.+.+|- |.+.. ..+..++++++.+++++.+.|+...
T Consensus 271 ~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~-~VnLIpyn-P~~~~--~~~~ps~e~i~~f~~iL~~~Gi~vt 342 (404)
T 3rfa_A 271 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWN-PFPGA--PYGRSSNSRIDRFSKVLMSYGFTTI 342 (404)
T ss_dssp TTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCE-EEEEEECC-CCTTC--CCCBCCHHHHHHHHHHHHHTTCEEE
T ss_pred CcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCC-cEEEEecc-CCCCC--CCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 55544 444778999999999999999875 34443443 54432 2345678899999999999998754
No 11
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.54 E-value=1e-13 Score=132.13 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=124.8
Q ss_pred eEEEEEeCCCCCCCCCCCccCCCCCC--CCCCCCchHHHHHHHHH-CCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh
Q 020304 103 TATIMLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (328)
Q Consensus 103 ~~~~i~~t~gC~~~C~FC~~~~~~~~--~~~~~~ei~~~~~~~~~-~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~ 179 (328)
....+.+|++|+.+|.||......+. ..++.+++.+.++.+.+ .|++.|.|+||++...+ -+.+.++++.+++.
T Consensus 115 ~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~---d~~L~~il~~l~~~ 191 (416)
T 2a5h_A 115 DRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVS---DETLEYIIAKLREI 191 (416)
T ss_dssp SEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSC---HHHHHHHHHHHHTS
T ss_pred CEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCC---HHHHHHHHHHHHhc
Confidence 46677889999999999977643321 23456778888888887 78999999999974433 14688999999875
Q ss_pred CCCc-EEEEEeCC-----CCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Q 020304 180 KPDI-MVECLTSD-----FRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS 253 (328)
Q Consensus 180 ~~~~-~i~~~t~~-----~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~ 253 (328)
+++ .+...|++ ..++++.++.|+++ +.+.+++++... + ..+ ++.+++++.+++ .|+.+...
T Consensus 192 -~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~--~-----ei~-~~v~~ai~~L~~--aGi~v~i~ 258 (416)
T 2a5h_A 192 -PHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP--N-----EIT-EESTRACQLLAD--AGVPLGNQ 258 (416)
T ss_dssp -TTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG--G-----GCC-HHHHHHHHHHHH--TTCCEEEE
T ss_pred -CCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH--H-----HHh-HHHHHHHHHHHH--cCCEEEEE
Confidence 444 45555554 24589999999998 667777665332 2 123 899999999999 99987766
Q ss_pred EEE--EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 254 IML--GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 254 ~iv--GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.++ |+.++.+++.++++++.++|++...++ ++
T Consensus 259 ~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~-~~ 292 (416)
T 2a5h_A 259 SVLLRGVNDCVHVMKELVNKLVKIRVRPYYIY-QC 292 (416)
T ss_dssp EECCTTTTCSHHHHHHHHHHHHHTTEEEEEEE-CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEEe-ec
Confidence 555 677889999999999999999876663 44
No 12
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.23 E-value=3.4e-10 Score=95.34 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=118.5
Q ss_pred cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH-HHHHhhhcCC
Q 020304 149 DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDP 227 (328)
Q Consensus 149 ~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~-~~~~~~~~~~ 227 (328)
..|.|+||+|. +. .+.+.++++.+++. ++.+.+.||+. ++++.++.|.++ ++.+.+++++. ++.++.++
T Consensus 5 ~~v~~tGGEPl-l~---~~~~~~l~~~~~~~--g~~~~l~TNG~-l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~-- 74 (182)
T 3can_A 5 GGVTFCGGEPL-LH---PEFLIDILKRCGQQ--GIHRAVDTTLL-ARKETVDEVMRN-CELLLIDLKSMDSTVHQTFC-- 74 (182)
T ss_dssp CCEEECSSTGG-GS---HHHHHHHHHHHHHT--TCCEEEECTTC-CCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHH--
T ss_pred CEEEEEccccc-CC---HHHHHHHHHHHHHC--CCcEEEECCCC-CCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHh--
Confidence 46889999863 33 24447999999986 67777788887 488999999988 89999999887 45676666
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEE--EcCCCHHHHHHHHHHHHhC-CC-CEEeeecccCCCCCC----------c
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIML--GLGESDDDLKEAMADLRSI-DV-DILTLGQYLQPTPLH----------L 293 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv--GlgEt~e~~~~~l~~l~~l-~~-~~i~i~~~l~PTp~~----------~ 293 (328)
+.+++.++++++.+++ .|+.+...+++ |+.++.+++.+.++++.++ |+ ..+.+.+|. |.... +
T Consensus 75 g~~~~~i~~~i~~l~~--~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~-p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 75 DVPNELILKNIRRVAE--ADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYH-DIGKGKHAKLGSIYNP 151 (182)
T ss_dssp SSCSHHHHHHHHHHHH--TTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECC-C---------------
T ss_pred CCCHHHHHHHHHHHHh--CCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCc-ccCHHHHHHhCCcCcc
Confidence 3457999999999999 88876666544 4458899999999999999 98 788886665 52211 1
Q ss_pred ccCCCCCHHH--HHHHHHHHHhcCCceee
Q 020304 294 TVKEYVTPEK--FDFWKAYGESIGFRYVA 320 (328)
Q Consensus 294 ~~~~~~~~~~--~~~l~~~~~~~G~~~~~ 320 (328)
...+..+.++ ++++++.+.+.|++.+-
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 1112344566 89999999999998664
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.42 E-value=6.5e-07 Score=82.92 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=95.2
Q ss_pred EEEeCCCCCCCCCCCccCCCCCC---C--CCCCCchHHHHHH-HHHCCCc-EEEEEeccCCCCCC-CcHHHHHHHHHHHH
Q 020304 106 IMLLGDTCTRGCRFCAVKTSRNP---A--PPDPMEPENTAKA-IASWGVD-YIVLTSVDRDDIPD-GGSGHFARTVKAMK 177 (328)
Q Consensus 106 ~i~~t~gC~~~C~FC~~~~~~~~---~--~~~~~ei~~~~~~-~~~~G~~-~i~l~gg~~~~l~~-~~~~~l~~li~~ik 177 (328)
.++...||+++|.||......+. . ....+++++.++. +.+.+.+ ..+-+|...|.|+- .......++++.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 35679999999999987643221 1 1233444444432 3344444 33334444333430 11234667777777
Q ss_pred HhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 178 KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 178 ~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
+. ++..+.+.|=...++ .+..|...|...+.+++.+ +++.+.+-+...+.++++++++.+++ +|+.+...+.-=
T Consensus 190 ~~-~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~--aGipv~v~iaPI 263 (368)
T 4fhd_A 190 AT-DYGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAG--AGYKLGFVVAPI 263 (368)
T ss_dssp HC-SSEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHH--TTCEEEEEEEEE
T ss_pred hC-CCceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHH--CCCeEEEEEeCc
Confidence 65 455666666333222 3444545555566666655 34544454456789999999999999 999988776443
Q ss_pred c-CCCH-HHHHHHHHHHHh
Q 020304 258 L-GESD-DDLKEAMADLRS 274 (328)
Q Consensus 258 l-gEt~-e~~~~~l~~l~~ 274 (328)
+ +++. ++..+.++.+.+
T Consensus 264 iP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 264 YRHEGWERGYFELFQELAR 282 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4 5554 566677765543
No 14
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=97.77 E-value=0.00019 Score=64.82 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-++++..+. .+ ...+..++++.+++ .+++.+..+. .+.+.++...++|++.
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p--~~~d~~~~~~~~~~-~~~~~~~~l~----~~~~~i~~a~~ag~~~ 96 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVP--QMGDHTEVLKGIQK-FPGINYPVLT----PNLKGFEAAVAAGAKE 96 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCTTTCG--GGTTHHHHHHHSCC-CTTCBCCEEC----CSHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCccccc--ccCCHHHHHHHHhh-CCCCEEEEEc----CCHHhHHHHHHCCCCE
Confidence 456777899999999999999887654321 11 01233456666665 3566554443 2578899999999999
Q ss_pred EeechhhHHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc------CCCHHHHHHHHHHHHhCCCCEEe
Q 020304 210 FAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL------GESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 210 i~~~~et~~~-~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl------gEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
+.+...+.+. ..+.++ .....++...+.++.+++ .|+.+..++++.+ .-+.+.+.+.++.+.++|++.+.
T Consensus 97 v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~--~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 174 (298)
T 2cw6_A 97 VVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS--ANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEIS 174 (298)
T ss_dssp EEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH--TTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8885544443 222222 112345677788889999 9999888877443 13688999999999999999887
Q ss_pred ee
Q 020304 282 LG 283 (328)
Q Consensus 282 i~ 283 (328)
+.
T Consensus 175 l~ 176 (298)
T 2cw6_A 175 LG 176 (298)
T ss_dssp EE
T ss_pred ec
Confidence 73
No 15
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=97.59 E-value=0.0024 Score=57.47 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=99.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.++..++++.+.+.|+..|-+++...+.+. .......++++.+++. +++.+.++.+ +.+.++...++|++.+
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~-p~~~~~~e~~~~i~~~-~~~~v~~l~~----n~~~i~~a~~~G~~~V 96 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKWV-PQLADSREVMAGIRRA-DGVRYSVLVP----NMKGYEAAAAAHADEI 96 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTC-GGGTTHHHHHHHSCCC-SSSEEEEECS----SHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCcccc-ccccCHHHHHHHHHhC-CCCEEEEEeC----CHHHHHHHHHCCCCEE
Confidence 45677789999999999999888653322211 0122455777777665 6788766542 6789999999999999
Q ss_pred eechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE--EEc----CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM--LGL----GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i--vGl----gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+...+.+... +..++.....+...++++.+++ .|+.+.+.+. +|. .-+.+++.+.++.+.++|++.+.+
T Consensus 97 ~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~--~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (295)
T 1ydn_A 97 AVFISASEGFSKANINCTIAESIERLSPVIGAAIN--DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSL 174 (295)
T ss_dssp EEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 88654444322 2111111234555666889999 9999876655 332 237888999999999999999888
Q ss_pred e
Q 020304 283 G 283 (328)
Q Consensus 283 ~ 283 (328)
.
T Consensus 175 ~ 175 (295)
T 1ydn_A 175 G 175 (295)
T ss_dssp E
T ss_pred c
Confidence 4
No 16
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=97.48 E-value=0.0037 Score=56.58 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=98.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-+.++..+. .+ ...+..++++.+++. ++..+.++.+ +.+-++...++|++.
T Consensus 25 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p--~~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~~g~~~ 97 (307)
T 1ydo_A 25 IATEDKITWINQLSRTGLSYIEITSFVHPKWIP--ALRDAIDVAKGIDRE-KGVTYAALVP----NQRGLENALEGGINE 97 (307)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCG--GGTTHHHHHHHSCCC-TTCEEEEECC----SHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCccccc--ccCCHHHHHHHhhhc-CCCeEEEEeC----CHHhHHHHHhCCcCE
Confidence 456777899999999999999887643321 11 012333566666554 6777766553 567899999999999
Q ss_pred EeechhhHHHH-HhhhcCCCCCH----HHHHHHHHHHHHhCCCCeEEEeEEEEcC------CCHHHHHHHHHHHHhCCCC
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGY----EQSLEVLKHAKLSKKGLITKSSIMLGLG------ESDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~----~~~l~~i~~~~~~~~Gi~v~~~~ivGlg------Et~e~~~~~l~~l~~l~~~ 278 (328)
+.+...+.+.. .+.+ +.+. +...+.++.+++ .|+.+..++..-++ -+.+.+.+.++.+.++|++
T Consensus 98 v~i~~~~sd~~~~~~l---~~s~~e~l~~~~~~v~~ak~--~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ 172 (307)
T 1ydo_A 98 ACVFMSASETHNRKNI---NKSTSESLHILKQVNNDAQK--ANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGIS 172 (307)
T ss_dssp EEEEEESSHHHHHTTT---CSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCS
T ss_pred EEEEeecCHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--CCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 98866554442 2222 2344 556778888999 99998887766442 3678899999999999999
Q ss_pred EEeee
Q 020304 279 ILTLG 283 (328)
Q Consensus 279 ~i~i~ 283 (328)
.+.+.
T Consensus 173 ~i~l~ 177 (307)
T 1ydo_A 173 ELSLG 177 (307)
T ss_dssp CEEEE
T ss_pred EEEEc
Confidence 88773
No 17
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.21 E-value=0.0027 Score=57.33 Aligned_cols=144 Identities=18% Similarity=0.273 Sum_probs=96.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-+.++..+. .+. .....++++.+.+. +++.+.++.+ +.+.++...++|++.
T Consensus 27 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~--~~d~~~~~~~~~~~-~~~~~~~l~~----~~~~i~~a~~aG~~~ 99 (302)
T 2ftp_A 27 IEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQ--MAGSAEVFAGIRQR-PGVTYAALAP----NLKGFEAALESGVKE 99 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-TTSEEEEECC----SHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCcccccc--ccCHHHHHHHhhhc-CCCEEEEEeC----CHHHHHHHHhCCcCE
Confidence 455677899999999999998876543221 111 12344566666544 6777765542 678999999999999
Q ss_pred EeechhhHHH-HHhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC------CCHHHHHHHHHHHHhCCCCEEe
Q 020304 210 FAHNIETVKR-LQRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG------ESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 210 i~~~~et~~~-~~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg------Et~e~~~~~l~~l~~l~~~~i~ 281 (328)
+.+...+.+. ..+.++ +.....+...+.++.+++ .|+.+...+..-++ -+++.+.+.++.+.+.|++.+.
T Consensus 100 v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~--~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~ 177 (302)
T 2ftp_A 100 VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQ--HQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVS 177 (302)
T ss_dssp EEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8875444333 222221 111234556777788899 99998877654332 3678888899999999999887
Q ss_pred ee
Q 020304 282 LG 283 (328)
Q Consensus 282 i~ 283 (328)
+.
T Consensus 178 l~ 179 (302)
T 2ftp_A 178 LG 179 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 18
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=97.02 E-value=0.023 Score=50.95 Aligned_cols=140 Identities=19% Similarity=0.085 Sum_probs=90.4
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-+.+.. .. ...+ +.++.+.+..++..+..+.+....+ +..++.++++|++.
T Consensus 24 ~~~~~K~~i~~~L~~~Gv~~IE~g~p~---~~---~~d~-e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~~ 96 (293)
T 3ewb_X 24 FDVKEKIQIALQLEKLGIDVIEAGFPI---SS---PGDF-ECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQ 96 (293)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECGG---GC---HHHH-HHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC---ccHH-HHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCCE
Confidence 455677899999999999988775421 22 2233 3356666666788887766531101 23445555689999
Q ss_pred EeechhhHHHHH-hhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQ-RIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~-~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+-.-+.+-.. +.+ +.+.++ ..+.++.+++ .|+.+..+...+..-+.+.+.+.++.+.++|++.+.+
T Consensus 97 v~i~~~~Sd~~~~~nl---~~s~~e~l~~~~~~v~~a~~--~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 97 IHIFLATSDVHMEYKL---KMSRAEVLASIKHHISYARQ--KFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp EEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHHT--TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 887555554422 222 345554 5566677788 8988765444332356777889999999999998877
No 19
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=96.97 E-value=0.033 Score=50.66 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=92.9
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHH----HHHHHHc
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRA----VETLVHS 205 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~----l~~L~~a 205 (328)
..+.++..++++.+.+.|++.|-+.. |... ...+ +.++.+++..++..+..+... .++- ++.++.+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~---~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF---PVSS---PGDF-NSVVEITKAVTRPTICALTRA---KEADINIAGEALRFA 93 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC---TTSC---HHHH-HHHHHHHHHCCSSEEEEECCS---CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---HhHH-HHHHHHHHhCCCCEEEEeecC---CHHHHHHHHHhhccc
Confidence 35678889999999999999887642 2222 2334 345666666678888776532 3333 4455555
Q ss_pred CCcEEeechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 206 GLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 206 G~~~i~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
|++.+.+..-+.+-.. +..+......+...++++.+++ .|+.+..+...+..-+.+.+.+.++.+.++|++.+.+
T Consensus 94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~--~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKK--VVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHT--TSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEe
Confidence 9999887554444321 2212224456778889999999 9998754444333456777889999999999998766
No 20
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=96.91 E-value=0.05 Score=51.18 Aligned_cols=140 Identities=22% Similarity=0.193 Sum_probs=92.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.++-.++++.+.+.|++.|-+.. + ... +.-.+.++.+.+......+..... .+.+-++...++|++.+
T Consensus 58 ~s~eeKl~Ia~~L~~~Gv~~IEvG~--P-~as----p~d~~~~~~i~~~~~~~~v~~~~r---~~~~di~~A~~aG~~~V 127 (423)
T 3ivs_A 58 FDTEKKIQIAKALDNFGVDYIELTS--P-VAS----EQSRQDCEAICKLGLKCKILTHIR---CHMDDARVAVETGVDGV 127 (423)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECC--T-TSC----HHHHHHHHHHHTSCCSSEEEEEEE---SCHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEee--c-ccC----HHHHHHHHHHHhcCCCCEEEEeec---cChhhHHHHHHcCCCEE
Confidence 4556778999999999999987743 2 222 344455666666533444432211 25666888999999998
Q ss_pred eechhhHHHHHh-hhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 211 AHNIETVKRLQR-IVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 211 ~~~~et~~~~~~-~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.+-+.+-..+ ..+ ......+...+.++.+++ .|+.+..+..-++.-+.+.+.+.++.+.+.|++.+.+
T Consensus 128 ~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~--~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l 199 (423)
T 3ivs_A 128 DVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKS--KGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGI 199 (423)
T ss_dssp EEEEEC-------------CHHHHHHHHHHHHHHT--TTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCcccc
Confidence 886555543221 111 111235677788999999 9999877766555678888999999999999998776
No 21
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=96.87 E-value=0.013 Score=53.88 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=93.3
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEE-----eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLT-----SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~-----gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..+.++..++++.+.+.|++.|-+. ++..+.+. .....-.+.++.+++..++..+..++......++.++...+
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g-~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~ 104 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYG-FGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQ 104 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTB-CCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-CCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHh
Confidence 3456677899999999999988874 22111110 00123456677777766788887663212236889999999
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+|++.+.+..- ....+...+.++.+++ .|+.+...+.-...-+.+.+.+.++.+.+.|++.+.+
T Consensus 105 aGvd~v~I~~~------------~s~~~~~~~~i~~ak~--~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l 168 (345)
T 1nvm_A 105 AGARVVRVATH------------CTEADVSKQHIEYARN--LGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp HTCCEEEEEEE------------TTCGGGGHHHHHHHHH--HTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCcCEEEEEEe------------ccHHHHHHHHHHHHHH--CCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 99999877421 1123456677778888 8888766654444667788889999999999988777
No 22
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=96.83 E-value=0.016 Score=53.02 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCCCchHHHHH-HHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHH--hCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 131 PDPMEPENTAK-AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKK--QKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 131 ~~~~ei~~~~~-~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~--~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.+.++..++++ .+.+.|++.|-+.+... ...+.+.+.++.+.... ..++..+..+.+. . +-++...++|+
T Consensus 38 ~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~~---~-~~i~~a~~~g~ 110 (337)
T 3ble_A 38 FSTSEKLNIAKFLLQKLNVDRVEIASARV---SKGELETVQKIMEWAATEQLTERIEILGFVDG---N-KTVDWIKDSGA 110 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEETTS---CTTHHHHHHHHHHHHHHTTCGGGEEEEEESST---T-HHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCC---ChhHHHHHHHHHhhhhhhccCCCCeEEEEccc---h-hhHHHHHHCCC
Confidence 45567788999 99999999988765432 21223444433332111 3356677666553 2 37888999999
Q ss_pred cEEeechhhHHHH-Hhhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE---EcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 208 DVFAHNIETVKRL-QRIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIML---GLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 208 ~~i~~~~et~~~~-~~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv---GlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.+...+.+.. .+.++ ......+...+.++.+++ .|+.+..++.. +...+.+.+.+.++.+.++|++.+.+
T Consensus 111 ~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 188 (337)
T 3ble_A 111 KVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIK--SGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFL 188 (337)
T ss_dssp CEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9988865554432 23222 011234566677788889 99987766554 32346788899999999999998877
Q ss_pred e
Q 020304 283 G 283 (328)
Q Consensus 283 ~ 283 (328)
.
T Consensus 189 ~ 189 (337)
T 3ble_A 189 P 189 (337)
T ss_dssp E
T ss_pred e
Confidence 3
No 23
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=96.60 E-value=0.086 Score=49.05 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=93.7
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
..+.++..++++.+.+.|++.|-+.+ |... +...+.++.+++..+...+..+... .++-++...++|++.
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~~~~v~~~~r~---~~~di~~a~~~g~~~ 90 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGLKAKVVTHIQC---RLDAAKVAVETGVQG 90 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCCSSEEEEEEES---CHHHHHHHHHTTCSE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCCCcEEEEEccc---ChhhHHHHHHcCCCE
Confidence 34567788999999999999887743 2222 4556778888876555655443221 456689999999998
Q ss_pred EeechhhHHHHHhhhcCCCCCH----HHHHHHHHHHHHhCCC--CeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGY----EQSLEVLKHAKLSKKG--LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~----~~~l~~i~~~~~~~~G--i~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+-..+.+-..+.. +.+. +...+.++.+++ .| +.+..+..-+..-+.+.+.+.++.+.+. ++.+.+
T Consensus 91 v~i~~~~s~~~~~~~---~~s~~e~l~~~~~~v~~ak~--~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l 163 (382)
T 2ztj_A 91 IDLLFGTSKYLRAPH---GRDIPRIIEEAKEVIAYIRE--AAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGL 163 (382)
T ss_dssp EEEEECC-----------CCCHHHHHHHHHHHHHHHHH--HCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEE
T ss_pred EEEEeccCHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEe
Confidence 887554444322222 3454 557788888899 88 8877666544566788899999999999 998777
No 24
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=96.22 E-value=0.23 Score=45.85 Aligned_cols=140 Identities=19% Similarity=0.114 Sum_probs=89.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDV 209 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~ 209 (328)
.+.++..++++.+.+.|++.|-... |... ...+ +.++.+.+..++..+..+......+ +..++.++.+|++.
T Consensus 31 ~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~---~~d~-e~v~~i~~~~~~~~i~~l~r~~~~di~~a~~al~~ag~~~ 103 (370)
T 3rmj_A 31 MTKEEKIRVARQLEKLGVDIIEAGF---AAAS---PGDF-EAVNAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKR 103 (370)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEE---GGGC---HHHH-HHHHHHHTTCSSSEEEEEEESSHHHHHHHHHHHTTSSSEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC---CCCC---HHHH-HHHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHhhCCCCE
Confidence 4556778999999999999876643 2222 2233 3445555555677776665321111 23445556699999
Q ss_pred EeechhhHHHH-HhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRL-QRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~-~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+...+.+-. .+.+ +.+.++ ..+.++.+++ .|..+..+...+..-+.+.+.+.++.+.+.|++.+.+
T Consensus 104 v~if~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~a~~--~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l 176 (370)
T 3rmj_A 104 IHTFIATSPIHMEYKL---KMKPKQVIEAAVKAVKIARE--YTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINI 176 (370)
T ss_dssp EEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHTT--TCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHH--cCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEe
Confidence 98866555542 2222 345555 4455677788 8887654444443556778889999999999998877
No 25
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=96.18 E-value=0.19 Score=47.80 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=92.8
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----CC-C----
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR-G---- 194 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~-----~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~~-~---- 194 (328)
..+.++..++++.+.+.|+..|-..++... .+.. .-.+.++.+++..++..+.+++.+ .. .
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~----d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv 101 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGE----DPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDV 101 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCC----CHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCC----CHHHHHHHHHHhCCCCeEEEEeccccccCcccccchh
Confidence 355677788899999999999988664310 0121 223456666665567776655521 10 0
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l 272 (328)
.+..++...++|++.+.+-.. ..+.+...++++.+++ .|..+..++ ..|...+.+.+.+.++.+
T Consensus 102 ~~~~v~~a~~~Gvd~i~if~~------------~sd~~ni~~~i~~ak~--~G~~v~~~i~~~~~~~~~~e~~~~~a~~l 167 (464)
T 2nx9_A 102 VDTFVERAVKNGMDVFRVFDA------------MNDVRNMQQALQAVKK--MGAHAQGTLCYTTSPVHNLQTWVDVAQQL 167 (464)
T ss_dssp HHHHHHHHHHTTCCEEEECCT------------TCCTHHHHHHHHHHHH--TTCEEEEEEECCCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcCEEEEEEe------------cCHHHHHHHHHHHHHH--CCCEEEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 156788999999998876421 1233567788999999 999876655 334456889999999999
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.++|++.+.+
T Consensus 168 ~~~Gad~I~l 177 (464)
T 2nx9_A 168 AELGVDSIAL 177 (464)
T ss_dssp HHTTCSEEEE
T ss_pred HHCCCCEEEE
Confidence 9999998877
No 26
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=96.06 E-value=0.16 Score=49.32 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=93.2
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccC-----CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC-----CCC-----C
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDR-----DDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-----DFR-----G 194 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-----~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~-----~~~-----~ 194 (328)
..+.++..++++.+.+.|+..|-+.++.. ..+.. .-.+.++.+++..|+..+.++.. +.. +
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~----d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv 118 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE----DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEV 118 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCC----CHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCC----CHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccc
Confidence 35667788899999999999998876421 01121 22345566665556777766552 110 1
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt~e~~~~~l~~l 272 (328)
.+..++.+.++|++.+.+-.. ..+.+...+.++.+++ .|..+...+ ..|..-+.+.+.+.++.+
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s------------~sd~~ni~~~i~~ak~--~G~~v~~~i~~~~~~~~~~e~~~~~a~~l 184 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDA------------MNDPRNMAHAMAAVKK--AGKHAQGTICYTISPVHTVEGYVKLAGQL 184 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCT------------TCCTHHHHHHHHHHHH--TTCEEEEEEECCCSTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEEEEe------------hhHHHHHHHHHHHHHH--CCCeEEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 356789999999998876321 1233667788999999 999876555 345566889999999999
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.++|++.+.+
T Consensus 185 ~~~Gad~I~L 194 (539)
T 1rqb_A 185 LDMGADSIAL 194 (539)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 9999998777
No 27
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=95.26 E-value=0.3 Score=41.92 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=77.7
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++.+.++.+.+.|++.+.+..-+...... ... +.++.+++.. ++.+.+ .+++.+++.++.+.++|++.+.++.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~-~ipv~v--~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG---SNH-ELLAEVVGKL-DVQVEL--SGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC---CCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC---ChH-HHHHHHHHhc-CCcEEE--ECCCCCHHHHHHHHHcCCCEEEECc
Confidence 67888899999999999886422111111 223 7888888774 566644 4555688899999999999999987
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHH-hCCCCeEE----EeEEE--EcCC-CHHHHHHHHHHHHhCCCCEEeeec
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKL-SKKGLITK----SSIML--GLGE-SDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~Gi~v~----~~~iv--GlgE-t~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+.+.. .+...+.++.+.+ ...++.+. ..-+. |..+ +. +..+.++.+.+.|++.+.++.
T Consensus 105 ~~l~~-----------p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~ 170 (244)
T 2y88_A 105 AALEN-----------PQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTD 170 (244)
T ss_dssp HHHHC-----------HHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHHTTCCCEEEEE
T ss_pred hHhhC-----------hHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHhCCCCEEEEEe
Confidence 65431 2333333333321 00122221 00111 2111 11 455667777888999887753
No 28
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=95.05 E-value=1.5 Score=37.67 Aligned_cols=111 Identities=10% Similarity=0.145 Sum_probs=77.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++--. +.-.+.++.+++.+|++.+-.. ..++.+.++...++|.+.+.
T Consensus 44 ~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~~~~iGaG---TVlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQPEMLIGAG---TILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCTTCEEEEE---CCCSHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCCCCEEeEC---CcCCHHHHHHHHHcCCCEEE
Confidence 46788999999999999988886322 2245788888888788666443 34689999999999999874
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
. +..+ .+.++.+++ .|+.+ |.|. -|..|+... .++|++.+.+|
T Consensus 112 s--------------P~~~----~~vi~~~~~--~gi~~----ipGv-~TptEi~~A----~~~Gad~vK~F 154 (232)
T 4e38_A 112 S--------------PGFN----PNTVRACQE--IGIDI----VPGV-NNPSTVEAA----LEMGLTTLKFF 154 (232)
T ss_dssp C--------------SSCC----HHHHHHHHH--HTCEE----ECEE-CSHHHHHHH----HHTTCCEEEEC
T ss_pred e--------------CCCC----HHHHHHHHH--cCCCE----EcCC-CCHHHHHHH----HHcCCCEEEEC
Confidence 2 1222 245555677 67763 4453 277776544 57889988875
No 29
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=95.01 E-value=0.55 Score=41.39 Aligned_cols=111 Identities=11% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCC---CHHHHHHHHHcCCcEEeechhh---------HHH-HHhhhcCCCCCHHHH
Q 020304 168 HFARTVKAMKKQKPDIMVECLTSDFRG---DLRAVETLVHSGLDVFAHNIET---------VKR-LQRIVRDPRAGYEQS 234 (328)
Q Consensus 168 ~l~~li~~ik~~~~~~~i~~~t~~~~~---~~e~l~~L~~aG~~~i~~~~et---------~~~-~~~~~~~~~~~~~~~ 234 (328)
++.+.++.+++.....-+-.++.+..- +.+.++.|.++|+|.+-+++-- ..+ ..+.+. .+.+.++.
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~-~G~~~~~~ 84 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALA-AKTTPDIC 84 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHH-TTCCHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHH
Confidence 566777777765433444445555441 2467788888888887764321 111 222222 26788899
Q ss_pred HHHHHHHHHhCCCCeEEEeEEEEcCCCHH--HHHHHHHHHHhCCCCEEee
Q 020304 235 LEVLKHAKLSKKGLITKSSIMLGLGESDD--DLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 235 l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e--~~~~~l~~l~~l~~~~i~i 282 (328)
++.++.+++.+..+++. +.|.-.... -+.+.++.+.+.|++-+-+
T Consensus 85 ~~~v~~~r~~~~~~Piv---lm~Y~n~v~~~g~~~f~~~~~~aGvdGvIi 131 (271)
T 3nav_A 85 FELIAQIRARNPETPIG---LLMYANLVYARGIDDFYQRCQKAGVDSVLI 131 (271)
T ss_dssp HHHHHHHHHHCTTSCEE---EEECHHHHHHTCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCCEE---EEecCcHHHHHhHHHHHHHHHHCCCCEEEE
Confidence 99999988733344432 223211111 1355677788888887665
No 30
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=94.93 E-value=0.73 Score=40.48 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCC---CCHHHHHHHHHcCCcEEeechhh---------HHH-HHhhhcCCCCCHHH
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFR---GDLRAVETLVHSGLDVFAHNIET---------VKR-LQRIVRDPRAGYEQ 233 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~---~~~e~l~~L~~aG~~~i~~~~et---------~~~-~~~~~~~~~~~~~~ 233 (328)
.++.+.++.+++.....-+-..+.+.. .+.+.++.|.++|+|.+.+++.- ... -.+.+. .+.+.++
T Consensus 3 ~ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~-~G~~~~~ 81 (267)
T 3vnd_A 3 NRYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLA-AGTTSSD 81 (267)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHH
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHH
Confidence 356677777776643433444455543 13577888888899888775211 111 112222 2678899
Q ss_pred HHHHHHHHHHhCCCCeEEEeEEEEcCCCHH--HHHHHHHHHHhCCCCEEee
Q 020304 234 SLEVLKHAKLSKKGLITKSSIMLGLGESDD--DLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 234 ~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e--~~~~~l~~l~~l~~~~i~i 282 (328)
.++.++.+++....+++ .+| |.-.... .+.+.++.+.+.|++.+.+
T Consensus 82 ~~~~v~~ir~~~~~~Pi--vlm-~Y~npv~~~g~e~f~~~~~~aGvdgvii 129 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMPI--GLL-LYANLVFANGIDEFYTKAQAAGVDSVLI 129 (267)
T ss_dssp HHHHHHHHHHHCTTCCE--EEE-ECHHHHHHHCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCCCE--EEE-ecCcHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 99999999873233442 122 2211111 1356677788889988766
No 31
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=94.54 E-value=1.5 Score=37.68 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=57.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++.+.+...+.. . .+.....++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.
T Consensus 28 ~~~d~~~~a~~~~~~Gad~i~v~d~~~~-~--~~~~~~~~~i~~i~~~~-~ipvi~--~ggI~~~~~~~~~~~~Gad~V~ 101 (253)
T 1thf_D 28 DSGDPVELGKFYSEIGIDELVFLDITAS-V--EKRKTMLELVEKVAEQI-DIPFTV--GGGIHDFETASELILRGADKVS 101 (253)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEEEESSCS-S--SHHHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHTTCSEEE
T ss_pred eccCHHHHHHHHHHcCCCEEEEECCchh-h--cCCcccHHHHHHHHHhC-CCCEEE--eCCCCCHHHHHHHHHcCCCEEE
Confidence 3456788889999999999988754421 1 12345667788888753 566644 4555688999999999999999
Q ss_pred echhhH
Q 020304 212 HNIETV 217 (328)
Q Consensus 212 ~~~et~ 217 (328)
++.+.+
T Consensus 102 lg~~~l 107 (253)
T 1thf_D 102 INTAAV 107 (253)
T ss_dssp ESHHHH
T ss_pred EChHHH
Confidence 876554
No 32
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=94.43 E-value=0.18 Score=43.53 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=54.9
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++.+.++.+.+.|++.+.+..-+...... ... ++++.+++.. ++.+.+ .+++.+++.++.+.++|++.+.++.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~-~ipv~v--~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAM-DIKVEL--SGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHC-SSEEEE--ESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhc-CCcEEE--ECCcCCHHHHHHHHHcCCCEEEECc
Confidence 77888899999999999886422110111 123 7888888764 566654 4555688899999999999999987
Q ss_pred hhHH
Q 020304 215 ETVK 218 (328)
Q Consensus 215 et~~ 218 (328)
+.+.
T Consensus 106 ~~l~ 109 (244)
T 1vzw_A 106 AALE 109 (244)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 6543
No 33
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=94.27 E-value=1.6 Score=37.43 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=57.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..+..+.++.+.+.|++.+.+...+.... ......++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.
T Consensus 29 ~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~-~iPvi~--~Ggi~~~~~~~~~~~~Gad~V~ 102 (252)
T 1ka9_F 29 DAGDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERV-FIPLTV--GGGVRSLEDARKLLLSGADKVS 102 (252)
T ss_dssp STTCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHHTCSEEE
T ss_pred ecCCHHHHHHHHHHcCCCEEEEEcCCcccc---CccccHHHHHHHHHhC-CCCEEE--ECCcCCHHHHHHHHHcCCCEEE
Confidence 345778889999999999988875432111 2345667788888763 566643 4555689999999999999999
Q ss_pred echhhH
Q 020304 212 HNIETV 217 (328)
Q Consensus 212 ~~~et~ 217 (328)
++...+
T Consensus 103 lg~~~l 108 (252)
T 1ka9_F 103 VNSAAV 108 (252)
T ss_dssp ECHHHH
T ss_pred EChHHH
Confidence 875443
No 34
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=94.02 E-value=0.27 Score=42.50 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++.+.+.|++.+.++..+...... ..-.++++.+++.. ++.+.+ ++++.+.+.++.+.++|++.+.++
T Consensus 35 ~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~---~~~~~~i~~i~~~~-~ipvi~--~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 35 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLT-TLPIIA--SGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTCSS---CCCHHHHHHHGGGC-CSCEEE--ESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CCHHHHHHHHHHcCCCEEEEEecCcccCCC---cccHHHHHHHHHhC-CCCEEE--eCCCCCHHHHHHHHHcCCCeeehh
Confidence 466889999999999999998654321111 12246778887764 566543 556668899999999999999987
Q ss_pred hhhH
Q 020304 214 IETV 217 (328)
Q Consensus 214 ~et~ 217 (328)
-..+
T Consensus 109 ~~~l 112 (247)
T 3tdn_A 109 TAAV 112 (247)
T ss_dssp HHHH
T ss_pred hHHh
Confidence 6544
No 35
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=93.89 E-value=2.6 Score=35.72 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=56.1
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.++..+.++.+.+.|++.+.++..+.... ......++++.+++.. ++.+.+ .+...+.+.++.+.++|++.+.+
T Consensus 32 ~~~~~~~a~~~~~~G~d~i~v~~~~~~~~---~~~~~~~~i~~i~~~~-~ipvi~--~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDSVKRVAEAV-SIPVLV--GGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHHHHHHHHHC-SSCEEE--ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHcCCCEEEEEeCCcccc---CCcccHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCCEEEE
Confidence 45678899999999999888875332111 2345677888888764 555543 44555788889999999999998
Q ss_pred chhh
Q 020304 213 NIET 216 (328)
Q Consensus 213 ~~et 216 (328)
+.+.
T Consensus 106 ~~~~ 109 (253)
T 1h5y_A 106 NTAA 109 (253)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7543
No 36
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=93.78 E-value=2.8 Score=35.64 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++--+ ..-.+.++.+++.+|++.+...+ .++.+.++...++|.|.+.
T Consensus 27 ~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~l~vgaGt---vl~~d~~~~A~~aGAd~v~ 94 (224)
T 1vhc_A 27 NADDILPLADTLAKNGLSVAEITFRS---------EAAADAIRLLRANRPDFLIAAGT---VLTAEQVVLAKSSGADFVV 94 (224)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCTTCEEEEES---CCSHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccC---------chHHHHHHHHHHhCcCcEEeeCc---EeeHHHHHHHHHCCCCEEE
Confidence 45677899999999999988776211 22356788888888887765533 3488999999999999884
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+ ..+ .+.++.+++ .|.. +++| -.|.+++.+ +.+.|++.+.+|
T Consensus 95 ~p--------------~~d----~~v~~~ar~--~g~~----~i~G-v~t~~e~~~----A~~~Gad~vk~F 137 (224)
T 1vhc_A 95 TP--------------GLN----PKIVKLCQD--LNFP----ITPG-VNNPMAIEI----ALEMGISAVKFF 137 (224)
T ss_dssp CS--------------SCC----HHHHHHHHH--TTCC----EECE-ECSHHHHHH----HHHTTCCEEEET
T ss_pred EC--------------CCC----HHHHHHHHH--hCCC----EEec-cCCHHHHHH----HHHCCCCEEEEe
Confidence 32 111 345566677 7765 3556 356776543 457899988884
No 37
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=93.59 E-value=1.2 Score=39.06 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc--CCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a--G~~ 208 (328)
.+.+.+.+.+++..+.|+.-+-+.++.. ...+.+++..+++.+++.. ++.+++-|. +.++++.-.++ |.+
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~-~~pisIDT~----~~~v~~aal~a~~Ga~ 102 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV-DLPCCLDST----NPDAIEAGLKVHRGHA 102 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC-CCCEEEECS----CHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC-CCeEEEeCC----CHHHHHHHHHhCCCCC
Confidence 3457788889999999999887765442 2235789999999998874 666665442 78888888888 977
Q ss_pred EEe-echhh--HHHHHhhh----------c----CCCCC----HHHHHHHHHHHHHhCCCCe---EEEeEEEEc-CCCHH
Q 020304 209 VFA-HNIET--VKRLQRIV----------R----DPRAG----YEQSLEVLKHAKLSKKGLI---TKSSIMLGL-GESDD 263 (328)
Q Consensus 209 ~i~-~~~et--~~~~~~~~----------~----~~~~~----~~~~l~~i~~~~~~~~Gi~---v~~~~ivGl-gEt~e 263 (328)
-++ ++.+. ++++...+ + +...+ .+...+.++.+.+ .|+. +..+-.+|+ |-+.+
T Consensus 103 iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~--~Gi~~~~IilDPg~gfigk~~~ 180 (271)
T 2yci_X 103 MINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADA--HGIPMTELYIDPLILPVNVAQE 180 (271)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCCCCTTTSTH
T ss_pred EEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCcccEEEecCCCccccCHH
Confidence 776 43322 12221111 0 01123 3445556667777 9996 778878888 88887
Q ss_pred HHHHHHHHHHhC
Q 020304 264 DLKEAMADLRSI 275 (328)
Q Consensus 264 ~~~~~l~~l~~l 275 (328)
+-.++++.++.+
T Consensus 181 ~~~~~l~~l~~~ 192 (271)
T 2yci_X 181 HAVEVLETIRQI 192 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555443
No 38
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=93.46 E-value=1.1 Score=39.65 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=82.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEecc-CCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~-~~~----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
.+++.+.+.++++.+.|+.-|-+.|.. .|. -...+.+++..+++.+++. ++.+++-| ...++++.-.++
T Consensus 26 ~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT----~~~~va~aAl~a 99 (280)
T 1eye_A 26 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDT----MRADVARAALQN 99 (280)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEEC----SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeC----CCHHHHHHHHHc
Confidence 456778889999999999988776511 111 1133467888888888865 56665533 267788777778
Q ss_pred CCcEEee-ch-----hhHH---HHH-hh----hcC--CC-------C-C-----HHHHHHHHHHHHHhCCCCe---EEEe
Q 020304 206 GLDVFAH-NI-----ETVK---RLQ-RI----VRD--PR-------A-G-----YEQSLEVLKHAKLSKKGLI---TKSS 253 (328)
Q Consensus 206 G~~~i~~-~~-----et~~---~~~-~~----~~~--~~-------~-~-----~~~~l~~i~~~~~~~~Gi~---v~~~ 253 (328)
|.+-++- +- +.++ +.. .. .++ .. + + .+...+.++.+.+ .|+. +..+
T Consensus 100 Ga~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~--~Gi~~~~IilD 177 (280)
T 1eye_A 100 GAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVA--AGVDPARLVLD 177 (280)
T ss_dssp TCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHH--cCCChhhEEEE
Confidence 8777653 11 1111 110 00 000 00 0 1 4556677888888 9996 6667
Q ss_pred EEEEcCCCHHHHHHHHHHHHhC
Q 020304 254 IMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~l~~l~~l 275 (328)
--+|++.|.++-.++++.+.++
T Consensus 178 Pg~Gf~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 178 PGLGFAKTAQHNWAILHALPEL 199 (280)
T ss_dssp CCTTSSCCHHHHHHHHHTHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHh
Confidence 6678888888766666666544
No 39
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=93.09 E-value=2.2 Score=36.17 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++....++.+.+.|++-+-++--. +.-.+.|+.+++.+|+..+-+ +..++.+.++...++|.+.+-
T Consensus 23 ~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~~~I~~l~~~~p~~~IGA---GTVlt~~~a~~ai~AGA~fiv 90 (217)
T 3lab_A 23 DLVHAIPMAKALVAGGVHLLEVTLRT---------EAGLAAISAIKKAVPEAIVGA---GTVCTADDFQKAIDAGAQFIV 90 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCTTSEEEE---ECCCSHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCeEee---ccccCHHHHHHHHHcCCCEEE
Confidence 56788999999999999988776322 235678889999888876644 345699999999999998774
No 40
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=93.01 E-value=1.6 Score=38.68 Aligned_cols=102 Identities=11% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
.+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| +|+|. +.+.++..+..+.+++
T Consensus 22 ~~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g------vi~Gvg~~~t~~ai~la~~A~~ 88 (286)
T 2r91_A 22 ANHVKNITSKGVDVVFVAGTTGLG-------PALSLQEKMELTDAATSAARR------VIVQVASLNADEAIALAKYAES 88 (286)
T ss_dssp HHHHHHHHHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHHHHCSS------EEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC------EEEeeCCCCHHHHHHHHHHHHh
Confidence 356777778999998763222221 135789999999998875455 88999 5688889999999999
Q ss_pred CCCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcCCce
Q 020304 275 IDVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIGFRY 318 (328)
Q Consensus 275 l~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G~~~ 318 (328)
+|+|.+-+. +|.+. +..+. .-++.+++++.+.++..
T Consensus 89 ~Gadavlv~-----~P~y~---~~~s~~~l~~~f~~va~a~~lPi 125 (286)
T 2r91_A 89 RGAEAVASL-----PPYYF---PRLSERQIAKYFRDLCSAVSIPV 125 (286)
T ss_dssp TTCSEEEEC-----CSCSS---TTCCHHHHHHHHHHHHHHCSSCE
T ss_pred cCCCEEEEc-----CCcCC---CCCCHHHHHHHHHHHHHhcCCCE
Confidence 999976652 33331 10233 33567788887765543
No 41
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=92.96 E-value=1.3 Score=39.32 Aligned_cols=134 Identities=14% Similarity=0.130 Sum_probs=73.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEec-cCCC---C-CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSV-DRDD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~---l-~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
.+.+.+.+.++++.+.|+.-+-+.|. ..|. . ...+.+++..+++.+++. ++.+++-|. +.++++.-.++
T Consensus 49 ~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT~----~~~Va~aAl~a 122 (294)
T 2dqw_A 49 LDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDTR----KPEVAEEALKL 122 (294)
T ss_dssp ----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEECS----CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEECC----CHHHHHHHHHh
Confidence 45678899999999999998777651 1111 1 134567888888888765 555554331 44555555555
Q ss_pred CCcEEe-----------------------echh-h-HHHHHhhhcCCCCC------HHHHHHHHHHHHHhCCCCe-EEEe
Q 020304 206 GLDVFA-----------------------HNIE-T-VKRLQRIVRDPRAG------YEQSLEVLKHAKLSKKGLI-TKSS 253 (328)
Q Consensus 206 G~~~i~-----------------------~~~e-t-~~~~~~~~~~~~~~------~~~~l~~i~~~~~~~~Gi~-v~~~ 253 (328)
|.+-++ +... . ...+... +.+. .+...+.++.+.+ .|+. +..+
T Consensus 123 Ga~iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~---~~y~dv~~ev~~~l~~~i~~a~~--~Gi~~IilD 197 (294)
T 2dqw_A 123 GAHLLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAH---ARYRDVVAEVKAFLEAQARRALS--AGVPQVVLD 197 (294)
T ss_dssp TCSEEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGG---CCCSSHHHHHHHHHHHHHHHHHH--TTCSCEEEE
T ss_pred CCCEEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCcccccc---CccccHHHHHHHHHHHHHHHHHH--CCCCcEEEc
Confidence 554443 2211 0 0001100 0011 3455667777888 9997 3333
Q ss_pred EEEEcCCCHHHHHHHHHHHHhC
Q 020304 254 IMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~l~~l~~l 275 (328)
--+|+|.|.++-.++++.++++
T Consensus 198 PG~Gf~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 198 PGFGFGKLLEHNLALLRRLDEI 219 (294)
T ss_dssp CCTTSSCCHHHHHHHHHTHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHH
Confidence 3346788888777777666553
No 42
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=92.95 E-value=1.6 Score=38.84 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| +|+|. +.+.++..+..+.++++
T Consensus 24 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~eEr~~v~~~~~~~~~g------viaGvg~~~t~~ai~la~~A~~~ 90 (293)
T 1w3i_A 24 IHAENLIRKGIDKLFVNGTTGLG-------PSLSPEEKLENLKAVYDVTNK------IIFQVGGLNLDDAIRLAKLSKDF 90 (293)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHTTCSC------EEEECCCSCHHHHHHHHHHGGGS
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHcCC------EEEecCCCCHHHHHHHHHHHHhc
Confidence 56677778899988763322221 135789999999998874444 88999 56888888999999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G~~~ 318 (328)
|+|.+-+. +|.+. +..+. .-++.+++++.+.++..
T Consensus 91 Gadavlv~-----~P~y~---~~~s~~~l~~~f~~va~a~~lPi 126 (293)
T 1w3i_A 91 DIVGIASY-----APYYY---PRMSEKHLVKYFKTLCEVSPHPV 126 (293)
T ss_dssp CCSEEEEE-----CCCSC---SSCCHHHHHHHHHHHHHHCSSCE
T ss_pred CCCEEEEc-----CCCCC---CCCCHHHHHHHHHHHHhhCCCCE
Confidence 99976652 33331 10233 33567788887765543
No 43
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=92.77 E-value=4.7 Score=35.34 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.+.++.+.+.|+..+.+..-. . +..+..+++ +.+++. .++.+. .-+++.++..+...+.+|.|.+.+.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd~-~-~f~Gs~~~L----~~ir~~-v~lPVl--~Kdfi~d~~qi~ea~~~GAD~VlLi 149 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTDT-P-SFQGAPEFL----TAARQA-CSLPAL--RKDFLFDPYQVYEARSWGADCILII 149 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCS-T-TTCCCHHHH----HHHHHT-SSSCEE--EESCCCSTHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEeccc-c-ccCCCHHHH----HHHHHh-cCCCEE--ECCccCCHHHHHHHHHcCCCEEEEc
Confidence 467889999999999988765422 2 333344544 445554 255553 3567778889999999999999886
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
... .+.++..+.++.+++ .|+.+-+.+ .|.+|+ +.+.++|++.+++++
T Consensus 150 ~a~------------L~~~~l~~l~~~a~~--lGl~~lvev-----h~~eEl----~~A~~~ga~iIGinn 197 (272)
T 3tsm_A 150 MAS------------VDDDLAKELEDTAFA--LGMDALIEV-----HDEAEM----ERALKLSSRLLGVNN 197 (272)
T ss_dssp TTT------------SCHHHHHHHHHHHHH--TTCEEEEEE-----CSHHHH----HHHTTSCCSEEEEEC
T ss_pred ccc------------cCHHHHHHHHHHHHH--cCCeEEEEe-----CCHHHH----HHHHhcCCCEEEECC
Confidence 432 234666777788888 898743332 466664 445578999999864
No 44
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=92.73 E-value=1.7 Score=38.56 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| +|+|. +.+.++..+..+.++++
T Consensus 24 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g------ViaGvg~~~t~~ai~la~~A~~~ 90 (288)
T 2nuw_A 24 THAKNLLEKGIDAIFVNGTTGLG-------PALSKDEKRQNLNALYDVTHK------LIFQVGSLNLNDVMELVKFSNEM 90 (288)
T ss_dssp HHHHHHHHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHTTTCSC------EEEECCCSCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC------eEEeeCCCCHHHHHHHHHHHHhc
Confidence 56677788899998763322221 145789999999998874444 88999 56888899999999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHH-HHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPE-KFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~-~~~~l~~~~~~~G~~~ 318 (328)
|+|.+-+. +|.+. +..+.+ -++.+++++.+.++..
T Consensus 91 Gadavlv~-----~P~y~---~~~s~~~l~~~f~~va~a~~lPi 126 (288)
T 2nuw_A 91 DILGVSSH-----SPYYF---PRLPEKFLAKYYEEIARISSHSL 126 (288)
T ss_dssp CCSEEEEC-----CCCSS---CSCCHHHHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEc-----CCcCC---CCCCHHHHHHHHHHHHHhcCCCE
Confidence 99976652 33331 102333 3567788888766543
No 45
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=92.58 E-value=0.86 Score=43.90 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=91.7
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+-.+.++.+.+.|++-+++-+.+. . .+...+.++.||+.+|++.+.+ .|. .+.+..+.|.++|.|.+.+++
T Consensus 281 d~~eR~~aLv~AGvD~iviD~ahG--h----s~~v~~~i~~ik~~~p~~~via-GNV--aT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLDSSQG--N----SVYQIEFIKWIKQTYPKIDVIA-GNV--VTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCC--C----SHHHHHHHHHHHHHCTTSEEEE-EEE--CSHHHHHHHHHHTCSEEEECS
T ss_pred cHHHHHHHHHhcCCcEEEEecccc--c----cHHHHHHHHHHHhhCCcceEEe-ccc--cCHHHHHHHHHcCCCEEeecC
Confidence 346778889999999888865443 2 3789999999999999988854 222 489999999999999998865
Q ss_pred hhHHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~~-~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
-...- ..+.+.+-+ -...-+.++.+.+++ .|+++.++- | -.+.-|+... ...|.+.+.+..++
T Consensus 352 GpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~--~~vpvIADG--G-I~~sGDi~KA----laaGAd~VMlGsll 416 (556)
T 4af0_A 352 GSGSICITQEVMAVGRPQGTAVYAVAEFASR--FGIPCIADG--G-IGNIGHIAKA----LALGASAVMMGGLL 416 (556)
T ss_dssp SCSTTBCCTTTCCSCCCHHHHHHHHHHHHGG--GTCCEEEES--C-CCSHHHHHHH----HHTTCSEEEESTTT
T ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHH--cCCCEEecC--C-cCcchHHHHH----hhcCCCEEEEchhh
Confidence 43322 123332111 234567777777888 787754442 1 2345555443 35788988887666
No 46
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=92.51 E-value=1.1 Score=38.82 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEE--Eecc-CCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEEeCCCCCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l--~gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~--i~~~t~~~~~~~e~l~~L~~aG 206 (328)
+...+.++++.+.+.|++.+.+ ..|. .|.+.- + .++++.+++..|+.. ++....+ .+..++.++++|
T Consensus 38 D~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~-G----~~~v~~lr~~~p~~~ldvHLmv~~---p~~~i~~~~~aG 109 (246)
T 3inp_A 38 DLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTF-G----PMVLKALRDYGITAGMDVHLMVKP---VDALIESFAKAG 109 (246)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCC-C----HHHHHHHHHHTCCSCEEEEEECSS---CHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhc-C----HHHHHHHHHhCCCCeEEEEEeeCC---HHHHHHHHHHcC
Confidence 3445688899999999986655 3232 222321 1 356777777654443 3333332 357899999999
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.|.+++..|+.+ + ..++++.+++ .|+.+. +.+..+...+.+.+. +. ++|.+-++ -+
T Consensus 110 Ad~itvH~Ea~~-----------~---~~~~i~~ir~--~G~k~G--valnp~Tp~e~l~~~---l~--~vD~VlvM-sV 165 (246)
T 3inp_A 110 ATSIVFHPEASE-----------H---IDRSLQLIKS--FGIQAG--LALNPATGIDCLKYV---ES--NIDRVLIM-SV 165 (246)
T ss_dssp CSEEEECGGGCS-----------C---HHHHHHHHHT--TTSEEE--EEECTTCCSGGGTTT---GG--GCSEEEEE-CS
T ss_pred CCEEEEccccch-----------h---HHHHHHHHHH--cCCeEE--EEecCCCCHHHHHHH---Hh--cCCEEEEe-ee
Confidence 999999876521 2 2456666778 898653 333323333322222 22 37777664 23
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
.|.-.. +.......+.+.+++++..+.|+.
T Consensus 166 ~PGfgG-Q~fi~~~l~KI~~lr~~~~~~~~~ 195 (246)
T 3inp_A 166 NPGFGG-QKFIPAMLDKAKEISKWISSTDRD 195 (246)
T ss_dssp CTTC---CCCCTTHHHHHHHHHHHHHHHTSC
T ss_pred cCCCCC-cccchHHHHHHHHHHHHHHhcCCC
Confidence 352111 111122245566677666665543
No 47
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=92.41 E-value=1.5 Score=38.72 Aligned_cols=138 Identities=10% Similarity=0.138 Sum_probs=88.1
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe-ccCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS-VDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g-g~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
.+++++.+.++++.+.|++-+-+.| +..|... ..+.+++..+++.+++.. ++.+++-| ...++++.-.++
T Consensus 35 ~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT----~~~~va~aAl~a 109 (282)
T 1aj0_A 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDT----SKPEVIRESAKV 109 (282)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEEC----CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeC----CCHHHHHHHHHc
Confidence 3456778889999999999887765 2222211 224567888888888764 67776543 267888888888
Q ss_pred CCcEEee-ch----hhHH---HHH-hh----hcCCCCC--------------HHHHHHHHHHHHHhCCCCe---EEEeEE
Q 020304 206 GLDVFAH-NI----ETVK---RLQ-RI----VRDPRAG--------------YEQSLEVLKHAKLSKKGLI---TKSSIM 255 (328)
Q Consensus 206 G~~~i~~-~~----et~~---~~~-~~----~~~~~~~--------------~~~~l~~i~~~~~~~~Gi~---v~~~~i 255 (328)
|.+-++- +- +.++ +.. .. .++...+ .+...+.++.+.+ .|+. +..+--
T Consensus 110 Ga~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~--~Gi~~~~IilDPg 187 (282)
T 1aj0_A 110 GAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ--AGIAKEKLLLDPG 187 (282)
T ss_dssp TCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECC
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHH--cCCChhhEEEeCC
Confidence 8877763 21 2221 110 00 0100111 5667778888888 9996 777766
Q ss_pred EEcCCCHHHHHHHHHHHHhC
Q 020304 256 LGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 256 vGlgEt~e~~~~~l~~l~~l 275 (328)
+|++.|.++-.++++.+.++
T Consensus 188 ~gf~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 188 FGFGKNLSHNYSLLARLAEF 207 (282)
T ss_dssp TTSSCCHHHHHHHHHTGGGG
T ss_pred CCcccCHHHHHHHHHHHHHH
Confidence 67788888877777777655
No 48
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=92.41 E-value=0.28 Score=44.24 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEecc-CCC--CC-CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVD-RDD--IP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~-~~~--l~-~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
.+.+.+.+.++++.+.|+.-|-+.|.. .|. .. ..+.+++..+++.+++..+++.+++-|. ..+++++-.++|
T Consensus 62 ~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~----~~~VaeaAl~aG 137 (318)
T 2vp8_A 62 FSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTW----RAQVAKAACAAG 137 (318)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEECS----CHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCC----CHHHHHHHHHhC
Confidence 456778899999999999977775421 111 11 1234567777888888766777766442 566666666666
Q ss_pred CcEEe-ec----hhhHH---HHH-hh--h--cCC-C------CCH------------HHHHHHHHHHHHhCCCCe---EE
Q 020304 207 LDVFA-HN----IETVK---RLQ-RI--V--RDP-R------AGY------------EQSLEVLKHAKLSKKGLI---TK 251 (328)
Q Consensus 207 ~~~i~-~~----~et~~---~~~-~~--~--~~~-~------~~~------------~~~l~~i~~~~~~~~Gi~---v~ 251 (328)
.+-++ ++ .+.++ +.. .. + ++. . ..| +...+.++.+.+ .|+. +.
T Consensus 138 a~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~--aGI~~~~Ii 215 (318)
T 2vp8_A 138 ADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA--AGVAREKVL 215 (318)
T ss_dssp CCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH--TTCCGGGEE
T ss_pred CCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH--cCCChhhEE
Confidence 66554 11 11111 100 00 0 000 0 012 344556777888 9995 66
Q ss_pred EeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 252 SSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 252 ~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
.+--+|++.|.++-.++++.+.++
T Consensus 216 lDPG~GF~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 216 IDPAHDFGKNTFHGLLLLRHVADL 239 (318)
T ss_dssp EETTTTCCTTSHHHHHHHHTHHHH
T ss_pred EcCCCCcccCHHHHHHHHHHHHHH
Confidence 665567777777766666555543
No 49
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=92.26 E-value=5.5 Score=34.88 Aligned_cols=119 Identities=12% Similarity=0.181 Sum_probs=78.7
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.+.++.+.+.|+..+.+..-+. + +.--.+.++.+++.. ++.+.+ -++..++..++..+++|.|.+.++
T Consensus 72 ~~p~~~A~~y~~~GA~~isvltd~~--~----f~Gs~~~l~~ir~~v-~lPvl~--kdfiid~~qv~~A~~~GAD~VlLi 142 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVTEQR--R----FQGSLDDLDAVRASV-SIPVLR--KDFVVQPYQIHEARAHGADMLLLI 142 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEECCGG--G----HHHHHHHHHHHHHHC-SSCEEE--ESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEecChh--h----cCCCHHHHHHHHHhC-CCCEEE--CccccCHHHHHHHHHcCCCEEEEe
Confidence 4568889999999999987753221 2 222334566666653 556543 467778888899999999999986
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
...+ +.++..+.++.+++ .|+.+ ++.. .|.+++.. +.++|++.+.+++
T Consensus 143 ~a~l------------~~~~l~~l~~~a~~--lGl~~----lvev-~t~ee~~~----A~~~Gad~IGv~~ 190 (272)
T 3qja_A 143 VAAL------------EQSVLVSMLDRTES--LGMTA----LVEV-HTEQEADR----ALKAGAKVIGVNA 190 (272)
T ss_dssp GGGS------------CHHHHHHHHHHHHH--TTCEE----EEEE-SSHHHHHH----HHHHTCSEEEEES
T ss_pred cccC------------CHHHHHHHHHHHHH--CCCcE----EEEc-CCHHHHHH----HHHCCCCEEEECC
Confidence 4322 24555566777888 88874 2222 46666543 3356999999864
No 50
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=92.19 E-value=1 Score=40.04 Aligned_cols=139 Identities=14% Similarity=0.082 Sum_probs=83.3
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEec-cCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
..+.+.+.+.++++.+.|+.-+-+.|. ..|... ..+.+++..+++.+++. ++.+++-| ...++++.-.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSIDT----~~~~Va~aAl~ 115 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSIDT----YKPAVMRAALA 115 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEEEC----CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEEEC----CCHHHHHHHHH
Confidence 346788899999999999998777652 112111 12346667777777654 56665533 26777777777
Q ss_pred cCCcEEe-echhhHHHHHhhhc--------------CCC-------C-C-----HHHHHHHHHHHHHhCCCCe---EEEe
Q 020304 205 SGLDVFA-HNIETVKRLQRIVR--------------DPR-------A-G-----YEQSLEVLKHAKLSKKGLI---TKSS 253 (328)
Q Consensus 205 aG~~~i~-~~~et~~~~~~~~~--------------~~~-------~-~-----~~~~l~~i~~~~~~~~Gi~---v~~~ 253 (328)
+|.+-++ ++.+..+++...+. +.. + + .+...+.++.+.+ .|+. +..+
T Consensus 116 aGa~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~--~Gi~~~~IilD 193 (294)
T 2y5s_A 116 AGADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRD--AGVAAERICVD 193 (294)
T ss_dssp HTCSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEE
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHH--cCCChhhEEEe
Confidence 7876664 22211111111110 000 0 1 3455667777888 9996 7777
Q ss_pred EEEEcCCCH-HHHHHHHHHHHhCC
Q 020304 254 IMLGLGESD-DDLKEAMADLRSID 276 (328)
Q Consensus 254 ~ivGlgEt~-e~~~~~l~~l~~l~ 276 (328)
--+|++.|. ++-.++++.+.++.
T Consensus 194 PG~Gf~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 194 PGFGFGKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp CCTTSSSCTTHHHHHHHHTGGGGS
T ss_pred CCCcccccchHHHHHHHHHHHHHH
Confidence 666777787 87778888877665
No 51
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=92.04 E-value=5.1 Score=34.03 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=74.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++- .+ ..-.+.++.+++.+|++.+...+ .++.+.++...++|.+.+.
T Consensus 36 ~~~~~~~~~~al~~gGv~~iel~~------k~---~~~~~~i~~l~~~~~~~~igagt---vl~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 36 REEDILPLADALAAGGIRTLEVTL------RS---QHGLKAIQVLREQRPELCVGAGT---VLDRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEES------SS---THHHHHHHHHHHHCTTSEEEEEC---CCSHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec------CC---ccHHHHHHHHHHhCcccEEeeCe---EeeHHHHHHHHHCCCCEEE
Confidence 456788999999999999887762 11 23456788888888887775543 3588999999999999885
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+ ..+ .+.++.+++ .|+. +|.| -.|.+|+.+ +.+.|++.+.+|
T Consensus 104 ~p--------------~~d----~~v~~~~~~--~g~~----~i~G-~~t~~e~~~----A~~~Gad~vk~F 146 (225)
T 1mxs_A 104 TP--------------GIT----EDILEAGVD--SEIP----LLPG-ISTPSEIMM----GYALGYRRFKLF 146 (225)
T ss_dssp CS--------------SCC----HHHHHHHHH--CSSC----EECE-ECSHHHHHH----HHTTTCCEEEET
T ss_pred eC--------------CCC----HHHHHHHHH--hCCC----EEEe-eCCHHHHHH----HHHCCCCEEEEc
Confidence 42 111 244455556 6654 4556 356665433 346788887774
No 52
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=91.97 E-value=5.7 Score=34.46 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCC---CHHHHHHHHHcCCcEEeech---------hhHHH-HHhhhcCCCCCHHHHH
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRG---DLRAVETLVHSGLDVFAHNI---------ETVKR-LQRIVRDPRAGYEQSL 235 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~---~~e~l~~L~~aG~~~i~~~~---------et~~~-~~~~~~~~~~~~~~~l 235 (328)
+.+.++.+++.....-+-..+++..- +.+.++.|.++|+|.+-++. .+..+ ..+... .+.+.++.+
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~-~G~~~~~~~ 82 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALK-NGIRFEDVL 82 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHH-cCCCHHHHH
Confidence 44555555544323333333444431 12456777777777766543 11111 112222 256677777
Q ss_pred HHHHHHHHhCCCCeE
Q 020304 236 EVLKHAKLSKKGLIT 250 (328)
Q Consensus 236 ~~i~~~~~~~~Gi~v 250 (328)
+.++.+++..+++++
T Consensus 83 ~~v~~ir~~~~~~Pi 97 (262)
T 2ekc_A 83 ELSETLRKEFPDIPF 97 (262)
T ss_dssp HHHHHHHHHCTTSCE
T ss_pred HHHHHHHhhcCCCCE
Confidence 777777763225543
No 53
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=91.84 E-value=2.4 Score=37.76 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|-. .-+|+|. +.+.++..+..+.++++
T Consensus 32 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g~r--vpviaGvg~~~t~~ai~la~~a~~~ 102 (301)
T 3m5v_A 32 RLIKRQIENGIDAVVPVGTTGES-------ATLTHEEHRTCIEIAVETCKGTK--VKVLAGAGSNATHEAVGLAKFAKEH 102 (301)
T ss_dssp HHHHHHHHTTCCEEECSSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSS--CEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCC--CeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 55667778888887763222221 13467777788877766434411 2267788 56778888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 103 Gadavlv 109 (301)
T 3m5v_A 103 GADGILS 109 (301)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 54
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=91.75 E-value=1.8 Score=37.26 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=92.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++++++..-+..... .....++++.+.+. ..+.+.+ .+++.+.+.++.+-++|++++.
T Consensus 29 ~~~dP~~~a~~~~~~gad~lhvvDld~a~~~---~~~~~~~i~~i~~~-~~~pl~v--GGGIrs~e~~~~~l~~GadkVi 102 (243)
T 4gj1_A 29 YKYNPLKKFKEYEKAGAKELHLVDLTGAKDP---SKRQFALIEKLAKE-VSVNLQV--GGGIRSKEEVKALLDCGVKRVV 102 (243)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEEEEHHHHHCG---GGCCHHHHHHHHHH-CCSEEEE--ESSCCCHHHHHHHHHTTCSEEE
T ss_pred eCCCHHHHHHHHHHCCCCEEEEEecCccccc---chhHHHHHHHHHHh-cCCCeEe--ccccccHHHHHHHHHcCCCEEE
Confidence 4457888999999999999988753211011 12335677777766 3566654 4555689999999999999999
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE------E---Ec-CCCHHHHHHHHHHHHhCCCCEEe
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM------L---GL-GESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i------v---Gl-gEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
++-..++ +++-..+..+..-. .-+.++.+.. + |- ..|.-+..+.++.+.++|+..+-
T Consensus 103 i~t~a~~-----------~p~li~e~~~~~g~--q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil 169 (243)
T 4gj1_A 103 IGSMAIK-----------DATLCLEILKEFGS--EAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHIL 169 (243)
T ss_dssp ECTTTTT-----------CHHHHHHHHHHHCT--TTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEE
T ss_pred Ecccccc-----------CCchHHHHHhcccC--ceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEE
Confidence 8643321 23333333333221 1233333332 2 11 23334467788888999999877
Q ss_pred eecccCC-CCCCcccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 282 LGQYLQP-TPLHLTVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 282 i~~~l~P-Tp~~~~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+...-+. |-. .+ .++.++.++... ++..+++|
T Consensus 170 ~t~Id~DGt~~------G~---d~~l~~~l~~~~~~ipviasG 203 (243)
T 4gj1_A 170 CTDISKDGTMQ------GV---NVRLYKLIHEIFPNICIQASG 203 (243)
T ss_dssp EEETTC-----------CC---CHHHHHHHHHHCTTSEEEEES
T ss_pred eeeeccccccc------CC---CHHHHHHHHHhcCCCCEEEEc
Confidence 7423221 221 11 144455555554 56777775
No 55
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=91.74 E-value=3.1 Score=35.53 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
++.++.++++|++.+-+.... . +...+.++..+.-+.+.+ .|+.+.+.-.. ..++.+.+.+.++.++++
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~-------~-~~~~~~~~~~~~~~~l~~--~gl~i~~~~~~-~~~~~~~~~~~i~~A~~l 101 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFH-------L-PLNSTDEQIRAFHDKCAA--HKVTGYAVGPI-YMKSEEEIDRAFDYAKRV 101 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTT-------S-CTTCCHHHHHHHHHHHHH--TTCEEEEEEEE-EECSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeccc-------C-CCCCCHHHHHHHHHHHHH--cCCeEEEEecc-ccCCHHHHHHHHHHHHHh
Confidence 678888888888888775431 1 112345555555566677 88875433222 237788888888888888
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
|+..+.+. |. .+.+.++.+++.+.|++..
T Consensus 102 Ga~~v~~~----p~-----------~~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 102 GVKLIVGV----PN-----------YELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp TCSEEEEE----EC-----------GGGHHHHHHHHHHHTCEEE
T ss_pred CCCEEEec----CC-----------HHHHHHHHHHHHHcCCEEE
Confidence 88877663 21 1346667777777777643
No 56
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=91.70 E-value=0.85 Score=39.01 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=85.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+.....+.++.+.+.|++.+.+---+.+..+. ...-.++++.+++... .+.++..+++ .++.++.++++|.|.+
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~--~~~g~~~v~~lr~~~~~~~~vhlmv~d---p~~~i~~~~~aGadgv 89 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN--ITIGPLIVDAIRPLTKKTLDVHLMIVE---PEKYVEDFAKAGADII 89 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--BCBCHHHHHHHGGGCCSEEEEEEESSS---GGGTHHHHHHHTCSEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc--hhhhHHHHHHHHhhcCCcEEEEEEccC---HHHHHHHHHHcCCCEE
Confidence 34566788888889999966553222111111 1222377888887642 2344455543 2457899999999999
Q ss_pred eechh--hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 211 AHNIE--TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 211 ~~~~e--t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
.++.| .. +...+.++.+++ .|+.+.. .+. ..|..+..+ .+.+ ++|.+.+... .|
T Consensus 90 ~vh~e~~~~--------------~~~~~~~~~i~~--~g~~~gv--~~~-p~t~~e~~~---~~~~-~~D~v~~msv-~p 145 (230)
T 1tqj_A 90 SVHVEHNAS--------------PHLHRTLCQIRE--LGKKAGA--VLN-PSTPLDFLE---YVLP-VCDLILIMSV-NP 145 (230)
T ss_dssp EEECSTTTC--------------TTHHHHHHHHHH--TTCEEEE--EEC-TTCCGGGGT---TTGG-GCSEEEEESS-CC
T ss_pred EECcccccc--------------hhHHHHHHHHHH--cCCcEEE--EEe-CCCcHHHHH---HHHh-cCCEEEEEEe-cc
Confidence 98765 21 223356666778 8886432 222 244444322 2222 5778777533 36
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhc--CCceeeec
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESI--GFRYVASG 322 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~--G~~~~~~g 322 (328)
+... +.......+.+.++++...+. ++..+.-|
T Consensus 146 g~gg-q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 146 GFGG-QSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp -----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred ccCC-ccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 3222 112222344556666655444 34444443
No 57
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=91.65 E-value=5.4 Score=33.54 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++--+ ..-.+.++.+++.++++.+...+ .++.+.++...++|.+.+.
T Consensus 26 ~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~~~vgagt---vi~~d~~~~A~~aGAd~v~ 93 (214)
T 1wbh_A 26 KLEHAVPMAKALVAGGVRVLNVTLRT---------ECAVDAIRAIAKEVPEAIVGAGT---VLNPQQLAEVTEAGAQFAI 93 (214)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEESCS---------TTHHHHHHHHHHHCTTSEEEEES---CCSHHHHHHHHHHTCSCEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---------hhHHHHHHHHHHHCcCCEEeeCE---EEEHHHHHHHHHcCCCEEE
Confidence 45677899999999999988776211 12356788888887877665432 4588999999999999875
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+ ..+ .+.++.+++ .|.. ++.| -.|.+|+.+ +.+.|++.+.+|
T Consensus 94 ~p--------------~~d----~~v~~~~~~--~g~~----~i~G-~~t~~e~~~----A~~~Gad~v~~F 136 (214)
T 1wbh_A 94 SP--------------GLT----EPLLKAATE--GTIP----LIPG-ISTVSELML----GMDYGLKEFKFF 136 (214)
T ss_dssp ES--------------SCC----HHHHHHHHH--SSSC----EEEE-ESSHHHHHH----HHHTTCCEEEET
T ss_pred cC--------------CCC----HHHHHHHHH--hCCC----EEEe-cCCHHHHHH----HHHCCCCEEEEe
Confidence 42 111 245556666 7755 4567 356666543 457899998884
No 58
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=91.60 E-value=7.3 Score=37.24 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=86.8
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++.+.+.|++.+.+....+ . .+.+.++++.+++.+|++.+.+. ...+.+.++.+.++|+|.+.++
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g--~----~~~~~~~i~~ir~~~p~~~Vi~g---~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHG--H----SEGVLQRIRETRAAYPHLEIIGG---NVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCT--T----SHHHHHHHHHHHHHCTTCCEEEE---EECSHHHHHHHHHHTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEeccccc--c----chHHHHHHHHHHHHCCCceEEEc---ccCcHHHHHHHHHhCCCEEEEC
Confidence 4457788888899999998876543 1 37788999999998887766441 1247899999999999999864
Q ss_pred -----hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 -----IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 -----~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.-+.... .... ...+.-+.++.+.+++ .++++ |..= --+.+|+.+.+ .+|++.+.+...+
T Consensus 301 ~g~Gs~~~tr~~-~g~g--~p~~~~i~~v~~~~~~--~~iPV----Ia~GGI~~~~di~kal----a~GAd~V~iGs~f 366 (496)
T 4fxs_A 301 IGPGSICTTRIV-TGVG--VPQITAIADAAGVANE--YGIPV----IADGGIRFSGDISKAI----AAGASCVMVGSMF 366 (496)
T ss_dssp SSCCTTBCHHHH-HCCC--CCHHHHHHHHHHHHGG--GTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCcCcccccc-cCCC--ccHHHHHHHHHHHhcc--CCCeE----EEeCCCCCHHHHHHHH----HcCCCeEEecHHH
Confidence 2111111 1111 2345556666666666 67663 4322 24677776654 3689988886554
No 59
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=91.24 E-value=2.8 Score=37.35 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+ ....+.+++.+.++.+.+...| . .-+|+|. +.+.++..+..+.++++
T Consensus 41 ~lv~~li~~Gv~gl~v~GttGE-------~~~Ls~~Er~~v~~~~~~~~~g-r--vpviaGvg~~st~~ai~la~~A~~~ 110 (304)
T 3cpr_A 41 EVAAYLVDKGLDSLVLAGTTGE-------SPTTTAAEKLELLKAVREEVGD-R--AKLIAGVGTNNTRTSVELAEAAASA 110 (304)
T ss_dssp HHHHHHHHTTCCEEEESSTTTT-------TTTSCHHHHHHHHHHHHHHHTT-T--SEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccC-------hhhCCHHHHHHHHHHHHHHhCC-C--CcEEecCCCCCHHHHHHHHHHHHhc
Confidence 5566677788888776322221 0245778888888877654333 1 2268888 55778888888888889
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
|+|.+-+. +|.+. +.-..+-++.+++++.+.++.
T Consensus 111 Gadavlv~-----~P~y~---~~~~~~l~~~f~~ia~a~~lP 144 (304)
T 3cpr_A 111 GADGLLVV-----TPYYS---KPSQEGLLAHFGAIAAATEVP 144 (304)
T ss_dssp TCSEEEEE-----CCCSS---CCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCEEEEC-----CCCCC---CCCHHHHHHHHHHHHHhcCCC
Confidence 98876552 22221 111123345666677665543
No 60
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=91.14 E-value=1.6 Score=37.17 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=85.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+.....+.++.+.+.|++.+.+.--+.+..+. ...-.+.++.+++... .+.+...+++ ..+.++.+.++|+|.+
T Consensus 17 d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~--~~~~~~~~~~lr~~~~~~~~v~lmv~d---~~~~i~~~~~agad~v 91 (228)
T 1h1y_A 17 DFANLAAEADRMVRLGADWLHMDIMDGHFVPN--LTIGAPVIQSLRKHTKAYLDCHLMVTN---PSDYVEPLAKAGASGF 91 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--BCBCHHHHHHHHTTCCSEEEEEEESSC---GGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc--hhhCHHHHHHHHhhcCCcEEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 34566788888999999976554222111111 1112367777777642 2344455653 3467899999999999
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC--CCCEEeeecccCC
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI--DVDILTLGQYLQP 288 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l--~~~~i~i~~~l~P 288 (328)
.+..+.. .. . +.+.++.+++ .|+.+. +.+. ..|..+. ++.+.+. +++.+.+... .|
T Consensus 92 ~vH~~~~----------~~-~--~~~~~~~i~~--~g~~ig--v~~~-p~t~~e~---~~~~~~~~~~~d~vl~~sv-~p 149 (228)
T 1h1y_A 92 TFHIEVS----------RD-N--WQELIQSIKA--KGMRPG--VSLR-PGTPVEE---VFPLVEAENPVELVLVMTV-EP 149 (228)
T ss_dssp EEEGGGC----------TT-T--HHHHHHHHHH--TTCEEE--EEEC-TTSCGGG---GHHHHHSSSCCSEEEEESS-CT
T ss_pred EECCCCc----------cc-H--HHHHHHHHHH--cCCCEE--EEEe-CCCCHHH---HHHHHhcCCCCCEEEEEee-cC
Confidence 8765431 11 1 1355566677 887644 2222 3344332 3334454 7888877533 25
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+... + ...+..++.++++.... ++..+..|
T Consensus 150 g~~g-~---~~~~~~l~~i~~~~~~~~~~pi~v~G 180 (228)
T 1h1y_A 150 GFGG-Q---KFMPEMMEKVRALRKKYPSLDIEVDG 180 (228)
T ss_dssp TCSS-C---CCCGGGHHHHHHHHHHCTTSEEEEES
T ss_pred CCCc-c---cCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3222 1 12333344444444433 55555554
No 61
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=91.09 E-value=0.8 Score=38.99 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC--CC-HHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GD-LRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~--~~-~e~l~~L~~aG~~~i~~~ 213 (328)
.+.++.+++.|++.|+|.--+++.- -+.+...++++..... .+.++.. -+.. .+ .+.++.|.+.|+++|.=+
T Consensus 79 ~~Di~~~~~~GadGvV~G~Lt~dg~--iD~~~~~~Li~~a~~~--~vTFHRA-FD~~~~~d~~~ale~L~~lGv~rILTS 153 (224)
T 2bdq_A 79 EEDILRAVELESDALVLGILTSNNH--IDTEAIEQLLPATQGL--PLVFHMA-FDVIPKSDQKKSIDQLVALGFTRILLH 153 (224)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSS--BCHHHHHHHHHHHTTC--CEEECGG-GGGSCTTTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeeECCCCC--cCHHHHHHHHHHhCCC--eEEEECc-hhccCCcCHHHHHHHHHHcCCCEEECC
Confidence 5677888999999999854333222 2367777877765432 2333210 1112 23 578999999999998742
Q ss_pred -hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccC-C-CC
Q 020304 214 -IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQ-P-TP 290 (328)
Q Consensus 214 -~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~-P-Tp 290 (328)
-. ++.+..+-++.++.+.+...| ...+|.|=|=+.+.+.+. +++.|+..++...... | .|
T Consensus 154 G~~-----------~~~~a~~g~~~L~~Lv~~a~~---ri~Im~GgGV~~~Ni~~l---~~~tGv~e~H~s~i~~~~~~~ 216 (224)
T 2bdq_A 154 GSS-----------NGEPIIENIKHIKALVEYANN---RIEIMVGGGVTAENYQYI---CQETGVKQAHGTRITQMAGDP 216 (224)
T ss_dssp SCS-----------SCCCGGGGHHHHHHHHHHHTT---SSEEEECSSCCTTTHHHH---HHHHTCCEEEETTCC------
T ss_pred CCC-----------CCCcHHHHHHHHHHHHHhhCC---CeEEEeCCCCCHHHHHHH---HHhhCCCEEccccccCCCCCc
Confidence 11 011133333333333221122 123788878777776654 4457899888854442 3 55
Q ss_pred C
Q 020304 291 L 291 (328)
Q Consensus 291 ~ 291 (328)
+
T Consensus 217 ~ 217 (224)
T 2bdq_A 217 L 217 (224)
T ss_dssp -
T ss_pred c
Confidence 4
No 62
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=91.08 E-value=8.7 Score=36.84 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=87.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++..+.++.+.+.|++.+.+.+.++ . ...+.++++++++.+|++.+.... ..+.+.++.+.++|+|.+.++
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g--~----~~~v~~~i~~i~~~~~~~~vi~g~---v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHG--H----SQGVIDKVKEVRAKYPSLNIIAGN---VATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCT--T----SHHHHHHHHHHHHHCTTSEEEEEE---ECSHHHHHHHHHHTCSEEEEC
T ss_pred cchHHHHHHHHhhccceEEeccccc--c----hhhhhhHHHHHHHhCCCceEEeee---eccHHHHHHHHHhCCCEEEEC
Confidence 3456778888999999998876543 1 378889999999998877664321 237899999999999999864
Q ss_pred hhhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.... .+...... .-++....++.+.+++ .++++ |..= --+.+|+.+.+ .+|++.+.+...+
T Consensus 326 ~g~gsi~~~~~~~g~g--~p~~~~l~~v~~~~~~--~~iPV----Ia~GGI~~~~di~kal----a~GA~~V~vGs~~ 391 (511)
T 3usb_A 326 IGPGSICTTRVVAGVG--VPQLTAVYDCATEARK--HGIPV----IADGGIKYSGDMVKAL----AAGAHVVMLGSMF 391 (511)
T ss_dssp SSCSTTCCHHHHHCCC--CCHHHHHHHHHHHHHT--TTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCccccccccccCCC--CCcHHHHHHHHHHHHh--CCCcE----EEeCCCCCHHHHHHHH----HhCchhheecHHH
Confidence 3221 12112111 2245555566666666 67763 4322 24677776654 4799988886544
No 63
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=90.85 E-value=2.3 Score=37.89 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~ 106 (301)
T 1xky_A 37 KLVNYLIDNGTTAIVVGGTTGES-------PTLTSEEKVALYRHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATEV 106 (301)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CceEEeCCCCCCHHHHHHHHHHHHhc
Confidence 45666777888887763222221 135677777877777654333 12367888 55778888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 107 Gadavlv 113 (301)
T 1xky_A 107 GVDAVML 113 (301)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 64
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=90.82 E-value=2.4 Score=37.62 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 32 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 101 (297)
T 3flu_A 32 DLIDWHIENGTDGIVAVGTTGES-------ATLSVEEHTAVIEAVVKHVAK---RVPVIAGTGANNTVEAIALSQAAEKA 101 (297)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 55667778888888763322221 135678888888877664333 13368888 56888888888999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
|++.+-+. +|.+. +.-..+-++.+++++...++..
T Consensus 102 Gadavlv~-----~P~y~---~~~~~~l~~~f~~va~a~~lPi 136 (297)
T 3flu_A 102 GADYTLSV-----VPYYN---KPSQEGIYQHFKTIAEATSIPM 136 (297)
T ss_dssp TCSEEEEE-----CCCSS---CCCHHHHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEC-----CCCCC---CCCHHHHHHHHHHHHHhCCCCE
Confidence 99876552 22321 1111233556677776655543
No 65
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=90.81 E-value=1.6 Score=39.27 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=78.1
Q ss_pred HHHhCCCcEEEEEe---C-CCCCCH----HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC
Q 020304 176 MKKQKPDIMVECLT---S-DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG 247 (328)
Q Consensus 176 ik~~~~~~~i~~~t---~-~~~~~~----e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~G 247 (328)
+++.+.++..-..| . ++.+|. +.++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|
T Consensus 8 ~~~~~~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~v~~~~g 80 (316)
T 3e96_A 8 LAKALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEF-------YALSLEEAKEEVRRTVEYVHG 80 (316)
T ss_dssp HHHHTSSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCC
Confidence 44555565543333 3 334554 56777888999998874333221 135788888888888764344
Q ss_pred -CeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcCCce
Q 020304 248 -LITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIGFRY 318 (328)
Q Consensus 248 -i~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G~~~ 318 (328)
++ +|+|.|.+.++..+..+.++++|++.+-+. +|.+. ..+. .-++.+++++...++..
T Consensus 81 rvp----ViaGvg~~t~~ai~la~~A~~~Gadavlv~-----~P~y~----~~s~~~l~~~f~~va~a~~lPi 140 (316)
T 3e96_A 81 RAL----VVAGIGYATSTAIELGNAAKAAGADAVMIH-----MPIHP----YVTAGGVYAYFRDIIEALDFPS 140 (316)
T ss_dssp SSE----EEEEECSSHHHHHHHHHHHHHHTCSEEEEC-----CCCCS----CCCHHHHHHHHHHHHHHHTSCE
T ss_pred CCc----EEEEeCcCHHHHHHHHHHHHhcCCCEEEEc-----CCCCC----CCCHHHHHHHHHHHHHhCCCCE
Confidence 33 677886688999999999999999987652 33321 1233 33566777777655443
No 66
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=90.69 E-value=2.6 Score=37.81 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|- .-+|+|. ..+.++..+..+.++++
T Consensus 48 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~gr---vpViaGvg~~st~eai~la~~A~~~ 117 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVGTTGES-------ATLDVEEHIQVIRRVVDQVKGR---IPVIAGTGANSTREAVALTEAAKSG 117 (314)
T ss_dssp HHHHHHHHHTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTTS---SCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCC---CcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 45666778899988774333221 1357788888888776643331 3368898 56888888899999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
|++.+-+. +|.+. +.-..+-++.+++++.+.++..
T Consensus 118 Gadavlv~-----~P~y~---~~s~~~l~~~f~~va~a~~lPi 152 (314)
T 3qze_A 118 GADACLLV-----TPYYN---KPTQEGMYQHFRHIAEAVAIPQ 152 (314)
T ss_dssp TCSEEEEE-----CCCSS---CCCHHHHHHHHHHHHHHSCSCE
T ss_pred CCCEEEEc-----CCCCC---CCCHHHHHHHHHHHHHhcCCCE
Confidence 99976652 23221 1111233455666666655443
No 67
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=90.61 E-value=12 Score=35.64 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=85.9
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++.+.+.|++.+.+....+ . .+.+.+.++.+++.+|++.+... ...+.+.++.+.++|+|.+.++
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g--~----~~~~~~~v~~i~~~~p~~~Vi~g---~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHG--H----SKGVIERVRWVKQTFPDVQVIGG---NIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCC--S----BHHHHHHHHHHHHHCTTSEEEEE---EECSHHHHHHHHHTTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCC--c----chhHHHHHHHHHHHCCCceEEEe---eeCcHHHHHHHHHcCCCEEEEC
Confidence 3456788888899999888865543 2 37888999999998888776542 1247899999999999999874
Q ss_pred hhhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.... .+...... ..+++-+.+..+.+++ .++++ |..=| .+.+|+.+.+. +|++.+.+...+
T Consensus 299 ~g~Gs~~~t~~~~g~g--~p~~~~l~~v~~~~~~--~~iPV----Ia~GGI~~~~di~kal~----~GAd~V~vGs~~ 364 (490)
T 4avf_A 299 IGPGSICTTRIVAGVG--VPQISAIANVAAALEG--TGVPL----IADGGIRFSGDLAKAMV----AGAYCVMMGSMF 364 (490)
T ss_dssp SSCSTTCHHHHHTCBC--CCHHHHHHHHHHHHTT--TTCCE----EEESCCCSHHHHHHHHH----HTCSEEEECTTT
T ss_pred CCCCcCCCccccCCCC--ccHHHHHHHHHHHhcc--CCCcE----EEeCCCCCHHHHHHHHH----cCCCeeeecHHH
Confidence 2111 11111111 2245555555555556 67763 33223 46777776653 589988886554
No 68
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=90.56 E-value=2.4 Score=38.11 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHhCCCcEEEEEeC---CCCCCH----HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 020304 176 MKKQKPDIMVECLTS---DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 176 ik~~~~~~~i~~~t~---~~~~~~----e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
++..+.++..-..|| ++.+|. ..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|
T Consensus 21 m~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~g- 92 (315)
T 3na8_A 21 MSASIHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEG-------AYLSDPEWDEVVDFTLKTVAH- 92 (315)
T ss_dssp --CCCCEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTG-------GGSCHHHHHHHHHHHHHHHTT-
T ss_pred cccccCceEEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC-
Confidence 333444554433333 333453 56777778899988764333221 135778888888877664333
Q ss_pred eEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 249 ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 249 ~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
..-+|+|. ..+.++..+..+.++++|+|.+-+. +|.+. +.-..+-++.+++++...++..
T Consensus 93 --rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~-----~P~y~---~~s~~~l~~~f~~va~a~~lPi 153 (315)
T 3na8_A 93 --RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL-----PISYW---KLNEAEVFQHYRAVGEAIGVPV 153 (315)
T ss_dssp --SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC-----CCCSS---CCCHHHHHHHHHHHHHHCSSCE
T ss_pred --CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC-----CCCCC---CCCHHHHHHHHHHHHHhCCCcE
Confidence 12368888 5788888889999999999876552 23321 1111233455666666655443
No 69
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=90.52 E-value=1.4 Score=39.59 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=81.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEec-cCCCCC--------CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSV-DRDDIP--------DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~--------~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L 202 (328)
+.+++.+.++++.+.|+.-+-+.|. ..|... ..+.+++..+++.+++. .++.+++-| ...+++++-
T Consensus 47 ~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~-~~vpISIDT----~~~~Va~aA 121 (314)
T 3tr9_A 47 DLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKR-FPQLISVDT----SRPRVMREA 121 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHH-CCSEEEEEC----SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhh-CCCeEEEeC----CCHHHHHHH
Confidence 4567788999999999997776541 122111 11235677788888876 367776644 267888888
Q ss_pred HHcCCcEEe-echhhHHHHHhhh------------cCCCCC-------------HHHHHHHHHHHHHhCCCCe---EEEe
Q 020304 203 VHSGLDVFA-HNIETVKRLQRIV------------RDPRAG-------------YEQSLEVLKHAKLSKKGLI---TKSS 253 (328)
Q Consensus 203 ~~aG~~~i~-~~~et~~~~~~~~------------~~~~~~-------------~~~~l~~i~~~~~~~~Gi~---v~~~ 253 (328)
.++|.+-++ ++....+++...+ ++...+ .+...+.++.+.+ .|+. +..+
T Consensus 122 l~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~--~GI~~~~IilD 199 (314)
T 3tr9_A 122 VNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKK--AGISEDRIIID 199 (314)
T ss_dssp HHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHH--TTCCGGGEEEE
T ss_pred HHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHH--cCCCHhHEEEe
Confidence 888877665 2211111111100 000011 3445567778888 9994 6666
Q ss_pred EEEE---cCCCHHHHHHHHHHHHh
Q 020304 254 IMLG---LGESDDDLKEAMADLRS 274 (328)
Q Consensus 254 ~ivG---lgEt~e~~~~~l~~l~~ 274 (328)
--+| +|.|.++=.++++.+.+
T Consensus 200 PG~G~~~F~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 200 PGFGQGNYGKNVSENFYLLNKLPE 223 (314)
T ss_dssp CCCCSGGGCCCHHHHHHHHHTTHH
T ss_pred CCCCchhhcCCHHHHHHHHHHHHH
Confidence 5568 88888876666555543
No 70
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=90.36 E-value=2.8 Score=37.12 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| . .-+|+|. +.+.++..+..+.++++
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g-r--vpviaGvg~~~t~~ai~la~~A~~~ 94 (294)
T 2ehh_A 25 NLIEFHVDNGTDAILVCGTTGES-------PTLTFEEHEKVIEFAVKRAAG-R--IKVIAGTGGNATHEAVHLTAHAKEV 94 (294)
T ss_dssp HHHHHHHTTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT-S--SEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC-C--CcEEEecCCCCHHHHHHHHHHHHhc
Confidence 45566677788877653222211 134667777777776653333 1 2367788 45777777888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 95 Gadavlv 101 (294)
T 2ehh_A 95 GADGALV 101 (294)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886554
No 71
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=90.26 E-value=2.5 Score=37.37 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 94 (289)
T 2yxg_A 25 ENINFLIENGVSGIVAVGTTGES-------PTLSHEEHKKVIEKVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDV 94 (289)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666677788887653222221 134667777777776653333 12367788 45777777888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 95 Gadavlv 101 (289)
T 2yxg_A 95 GADAVLS 101 (289)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886554
No 72
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=90.12 E-value=1.2 Score=39.42 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=53.9
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC-C-HHHHHHHHHcC
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-D-LRAVETLVHSG 206 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~-~-~e~l~~L~~aG 206 (328)
...+++|+.+.+.+..+.|+.-+++-.=+.+.-+..+.+.+.++++.|++..|++-+...|.+... + ++.+..+ +..
T Consensus 29 lPvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~ 107 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALK 107 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcC
Confidence 345778888888888899988666632121112223479999999999998788877664433222 3 4555555 555
Q ss_pred CcEEee
Q 020304 207 LDVFAH 212 (328)
Q Consensus 207 ~~~i~~ 212 (328)
.+..++
T Consensus 108 Pe~asl 113 (282)
T 2y7e_A 108 PEMATL 113 (282)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 565543
No 73
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=90.05 E-value=5.2 Score=35.66 Aligned_cols=119 Identities=16% Similarity=0.066 Sum_probs=70.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-C-C--CCCCH-HHHHHH---
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-S-D--FRGDL-RAVETL--- 202 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~-~--~~~~~-e~l~~L--- 202 (328)
.+.+++.+.+..+.+.|++.|+...|+++.-.+++..+-.++++.|++. .++.+.+.. | . ..-+. ..++.|
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 3457788888999999999998888887644333456778888888876 356554322 1 1 11132 233333
Q ss_pred HHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHH
Q 020304 203 VHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKE 267 (328)
Q Consensus 203 ~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~ 267 (328)
.+||.+.+.= . .-++.+.+.+.++.+++ .|+. .-++.|+ -.+...+..
T Consensus 173 vdAGAdf~iT---------Q----~ffD~~~~~~f~~~~r~--~Gi~--vPIi~GImPi~s~~~~~~ 222 (304)
T 3fst_A 173 VDAGANRAIT---------Q----FFFDVESYLRFRDRCVS--AGID--VEIIPGILPVSNFKQAKK 222 (304)
T ss_dssp HHHTCCEEEE---------C----CCSCHHHHHHHHHHHHH--TTCC--SCEECEECCCSCHHHHHH
T ss_pred HHcCCCEEEe---------C----ccCCHHHHHHHHHHHHh--cCCC--CcEEEEecccCCHHHHHH
Confidence 3688887431 0 24566677777777777 7764 3456666 344444433
No 74
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=90.03 E-value=2.5 Score=37.98 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 47 ~li~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~v~~~~g---rvpViaGvg~~st~~ai~la~~A~~~ 116 (315)
T 3si9_A 47 NFVEWQITQGINGVSPVGTTGES-------PTLTHEEHKRIIELCVEQVAK---RVPVVAGAGSNSTSEAVELAKHAEKA 116 (315)
T ss_dssp HHHHHHHHTTCSEEECSSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEeCccccCc-------cccCHHHHHHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666777888887763222221 134677777777777653333 12367788 56777888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 117 Gadavlv 123 (315)
T 3si9_A 117 GADAVLV 123 (315)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 75
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=89.97 E-value=3 Score=36.96 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=51.7
Q ss_pred HHHHHHHH-cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVH-SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~-aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
..++.+.+ +|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+++
T Consensus 28 ~lv~~li~~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~ 97 (293)
T 1f6k_A 28 QIIRHNIDKMKVDGLYVGGSTGEN-------FMLSTEEKKEIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATE 97 (293)
T ss_dssp HHHHHHHHTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCcEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 55666777 889888763322221 135778888888877654344 12378888 5577888888899999
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
+|+|.+-+
T Consensus 98 ~Gadavlv 105 (293)
T 1f6k_A 98 LGYDCLSA 105 (293)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 99987655
No 76
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=89.78 E-value=3.4 Score=36.97 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 33 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~ 102 (309)
T 3fkr_A 33 RAVDFMIDAGSDGLCILANFSEQ-------FAITDDERDVLTRTILEHVAG---RVPVIVTTSHYSTQVCAARSLRAQQL 102 (309)
T ss_dssp HHHHHHHHTTCSCEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEecCCchHHHHHHHHHHHHHc
Confidence 44555666677766653222211 124556666666665543222 12256666 45666666677777777
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 103 Gadavlv 109 (309)
T 3fkr_A 103 GAAMVMA 109 (309)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 7775544
No 77
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=89.77 E-value=3 Score=36.95 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~ 94 (292)
T 2vc6_A 25 DLVEWQIEEGSFGLVPCGTTGES-------PTLSKSEHEQVVEITIKTANG---RVPVIAGAGSNSTAEAIAFVRHAQNA 94 (292)
T ss_dssp HHHHHHHHTTCSEEETTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHHc
Confidence 55666777888887763222221 135677777777777653333 12367888 55777888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+-+
T Consensus 95 Gadavlv 101 (292)
T 2vc6_A 95 GADGVLI 101 (292)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 78
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=89.75 E-value=2.4 Score=37.66 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 25 ~lv~~li~~Gv~gi~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~ 94 (297)
T 2rfg_A 25 GLVDWQIKHGAHGLVPVGTTGES-------PTLTEEEHKRVVALVAEQAQG---RVPVIAGAGSNNPVEAVRYAQHAQQA 94 (297)
T ss_dssp HHHHHHHHTTCSEEECSSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEccCCCCHHHHHHHHHHHHhc
Confidence 55667778899888763322221 135678888888877664344 12368888 55778888888999999
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 95 Gadavlv 101 (297)
T 2rfg_A 95 GADAVLC 101 (297)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9987655
No 79
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=89.74 E-value=3.1 Score=37.30 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID 276 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~ 276 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|.|.+.++..+..+.++++|
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~vi~~~~~~~~g---rvpViaGvg~st~~ai~la~~A~~~G 106 (314)
T 3d0c_A 37 DNVEFLLQNGIEVIVPNGNTGEF-------YALTIEEAKQVATRVTELVNG---RATVVAGIGYSVDTAIELGKSAIDSG 106 (314)
T ss_dssp HHHHHHHHTTCSEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECcccCCh-------hhCCHHHHHHHHHHHHHHhCC---CCeEEecCCcCHHHHHHHHHHHHHcC
Confidence 56777888999998763322221 145788888888888764344 12378899338889999999999999
Q ss_pred CCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 277 VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 277 ~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
+|.+-+. +|.+. +.-..+-++.+++++.+.++.
T Consensus 107 adavlv~-----~P~y~---~~s~~~l~~~f~~va~a~~lP 139 (314)
T 3d0c_A 107 ADCVMIH-----QPVHP---YITDAGAVEYYRNIIEALDAP 139 (314)
T ss_dssp CSEEEEC-----CCCCS---CCCHHHHHHHHHHHHHHSSSC
T ss_pred CCEEEEC-----CCCCC---CCCHHHHHHHHHHHHHhCCCC
Confidence 9976652 33331 111133456777888776554
No 80
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=89.68 E-value=3.1 Score=36.87 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. ..+.++..+..+.++++
T Consensus 27 ~lv~~li~~Gv~gl~v~GttGE~-------~~Lt~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 96 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNGTTAES-------PTLTTDEKELILKTVIDLVDK---RVPVIAGTGTNDTEKSIQASIQAKAL 96 (292)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECcccccc-------ccCCHHHHHHHHHHHHHHhCC---CCcEEEeCCcccHHHHHHHHHHHHHc
Confidence 56777788899988764333221 134678888888777663333 12368888 56788888888999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCC-HHHHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVT-PEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~-~~~~~~l~~~~~~~G~~~ 318 (328)
|+|.+.+. +|.+. + .+ .+-++.+++++...++..
T Consensus 97 Gadavlv~-----~P~y~---~-~~~~~l~~~f~~ia~a~~lPi 131 (292)
T 3daq_A 97 GADAIMLI-----TPYYN---K-TNQRGLVKHFEAIADAVKLPV 131 (292)
T ss_dssp TCSEEEEE-----CCCSS---C-CCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCEEEEC-----CCCCC---C-CCHHHHHHHHHHHHHhCCCCE
Confidence 99876652 22221 1 12 233455666666544443
No 81
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=89.67 E-value=1.4 Score=37.70 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHH-hhhcCCCCCHHHHHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~-~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
..+.+.++++.+++. ++.++.+... +++.++.-++.|.+++-+.-..+-.-+ ..-. ...++.+.++.+.+++
T Consensus 112 ~~~~l~~~i~~L~~~--GIrVSLFIDp---d~~qi~aA~~~GA~~IELhTG~Ya~a~~~~~~--~~el~~i~~aa~~A~~ 184 (243)
T 1m5w_A 112 QRDKMRDACKRLADA--GIQVSLFIDA---DEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQ--AQELARIAKAATFAAS 184 (243)
T ss_dssp GHHHHHHHHHHHHHT--TCEEEEEECS---CHHHHHHHHHTTCSEEEEECHHHHHCCSHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCchhH--HHHHHHHHHHHHHHHH
Confidence 468999999999987 7899887754 789999999999999987544432211 0000 1256788888899999
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.|+.|++ |+|-|.+.+.... +=-++..+++...+
T Consensus 185 --lGL~VnA----GHgL~y~Nv~~ia---~ip~i~ElnIGHai 218 (243)
T 1m5w_A 185 --LGLKVNA----GHGLTYHNVKAIA---AIPEMHELNIGHAI 218 (243)
T ss_dssp --TTCEEEE----ESSCCTTTHHHHH---TCTTEEEEEECHHH
T ss_pred --cCCEEec----CCCCCHHHHHHHh---hCCCCeEEccCHHH
Confidence 9998764 6777766654431 11234556665544
No 82
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=89.65 E-value=2.2 Score=38.07 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 40 ~lv~~li~~Gv~gi~v~GttGE~-------~~Lt~~Er~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 109 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSGTTGES-------PTTTDGEKIELLRAVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAE 109 (304)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 56677778899988763322221 135778888888877664333 12368888 57888888899999999
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 110 Gadavlv 116 (304)
T 3l21_A 110 GAHGLLV 116 (304)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9987665
No 83
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=89.51 E-value=2.4 Score=38.60 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 56 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 125 (343)
T 2v9d_A 56 ALIDDLIKAGVDGLFFLGSGGEF-------SQLGAEERKAIARFAIDHVDR---RVPVLIGTGGTNARETIELSQHAQQA 125 (343)
T ss_dssp HHHHHHHHTTCSCEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 45666677788887653222211 134667777777777653333 12367888 46777777888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 126 Gadavlv 132 (343)
T 2v9d_A 126 GADGIVV 132 (343)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886655
No 84
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=89.42 E-value=2.8 Score=37.41 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~vi~~~~~~~~g---rvpViaGvg~~st~~ai~la~~A~~~ 106 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLGTTGES-------PTVNEDEREKLVSRTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKL 106 (306)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCC---CCeEEEcCCCccHHHHHHHHHHHHhc
Confidence 45666777888887763322221 135677777777777653333 12367888 55778888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+-+
T Consensus 107 Gadavlv 113 (306)
T 1o5k_A 107 GANGVLV 113 (306)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 85
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=89.32 E-value=3.8 Score=36.28 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 28 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~ 97 (294)
T 3b4u_A 28 AHARRCLSNGCDSVTLFGTTGEG-------CSVGSRERQAILSSFIAAGIA---PSRIVTGVLVDSIEDAADQSAEALNA 97 (294)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHTTCC---GGGEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCccHHHHHHHHHHHHhc
Confidence 45666777788887653222211 135677888888877764333 12367788 45777777888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+-+
T Consensus 98 Gadavlv 104 (294)
T 3b4u_A 98 GARNILL 104 (294)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8886655
No 86
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=89.28 E-value=2.3 Score=38.30 Aligned_cols=136 Identities=10% Similarity=0.116 Sum_probs=78.5
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCC-CCCCCcHHHH--HHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHH---H
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHF--ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL---V 203 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~-~l~~~~~~~l--~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L---~ 203 (328)
..+.++..++++.+.+.|++.|-+.....+ ...+. ...+ .+.++.+++. |+..+..+.++....++-++.+ .
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~-~~~~~~~e~l~~i~~~-~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMG-KFGYTPVSVLKHLRNI-STKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCC-HHHHCCHHHHHHHHHH-CCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCcccccc-ccccChHHHHHHHhhc-cCCeEEEEecCCCCChhhHHHHHHhh
Confidence 345677889999999999998877643211 11110 1111 3556666664 7888877654321112223333 3
Q ss_pred HcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEee
Q 020304 204 HSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 204 ~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i 282 (328)
++|++.+.+... .++.++..+.++.+++ .|+.+...+...-+- +.+.+.+.+..+ +.|++.+.+
T Consensus 98 ~~Gvd~~ri~~~------------~~nle~~~~~v~~ak~--~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G~~~i~l 162 (320)
T 3dxi_A 98 IGLVDMIRIAID------------PQNIDRAIVLAKAIKT--MGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKIADLFCM 162 (320)
T ss_dssp TTTCSEEEEEEC------------GGGHHHHHHHHHHHHT--TTCEEEEEECCTTTGGGSTTSGGGGGGG-TTTCSEEEE
T ss_pred hcCCCEEEEEec------------HHHHHHHHHHHHHHHH--CCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCCCCEEEE
Confidence 478998876431 1247888899999999 999876655542122 222333333322 458887766
No 87
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=89.24 E-value=2.9 Score=37.00 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|- .-+|+|. +.+.++..+..+.++++
T Consensus 26 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~gr---~pviaGvg~~~t~~ai~la~~a~~~ 95 (291)
T 3tak_A 26 KLVEWHIEQGTNSIVAVGTTGEA-------STLSMEEHTQVIKEIIRVANKR---IPIIAGTGANSTREAIELTKAAKDL 95 (291)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTS---SCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECcccccc-------ccCCHHHHHHHHHHHHHHhCCC---CeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45666777888887763222221 1346778888887776633331 3367888 56788888888888888
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCce
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 318 (328)
|+|.+-+. +|.+. +.-...-++.+++++...++..
T Consensus 96 Gadavlv~-----~P~y~---~~~~~~l~~~f~~ia~a~~lPi 130 (291)
T 3tak_A 96 GADAALLV-----TPYYN---KPTQEGLYQHYKAIAEAVELPL 130 (291)
T ss_dssp TCSEEEEE-----CCCSS---CCCHHHHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEc-----CCCCC---CCCHHHHHHHHHHHHHhcCCCE
Confidence 88876552 22221 1111233455666666655443
No 88
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=89.19 E-value=2.1 Score=41.72 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH-----------HHHHHH
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL-----------RAVETL 202 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~-----------e~l~~L 202 (328)
.++.+.++.+.+.|++++++..-+...-.........++++.+++.. .+.+.+ .+++.+. +.++.+
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~-~ipi~v--gGGIr~~~d~~~~~~~~~~~a~~~ 356 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTV--GGGIKDIVDVDGTKIPALEVASLY 356 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEE--ESSCSCEECTTCCEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC-CCcEEE--eCccccchhcccccchHHHHHHHH
Confidence 36788999999999999988643321000001233567788887653 455543 2333232 779999
Q ss_pred HHcCCcEEeechhhHHH
Q 020304 203 VHSGLDVFAHNIETVKR 219 (328)
Q Consensus 203 ~~aG~~~i~~~~et~~~ 219 (328)
.++|.+.+.++-....+
T Consensus 357 l~aGad~V~igt~~~~~ 373 (555)
T 1jvn_A 357 FRSGADKVSIGTDAVYA 373 (555)
T ss_dssp HHHTCSEEEECHHHHHH
T ss_pred HHcCCCEEEECCHHhhC
Confidence 99999999998777653
No 89
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=89.17 E-value=4.6 Score=40.46 Aligned_cols=135 Identities=14% Similarity=0.041 Sum_probs=88.3
Q ss_pred CCCCCchHHHHHHHHHC--CCcEEEEEeccC-----CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC---CC---C--
Q 020304 130 PPDPMEPENTAKAIASW--GVDYIVLTSVDR-----DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---FR---G-- 194 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~--G~~~i~l~gg~~-----~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~---~~---~-- 194 (328)
+.+.++..++++.+.+. |+..|-+.||.. +.+...+. +.++.+++..|+..+..+..+ .- .
T Consensus 121 r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~----e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~ 196 (718)
T 3bg3_A 121 RVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPW----RRLQELRELIPNIPFQMLLRGANAVGYTNYPD 196 (718)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHH----HHHHHHHHHCSSSCEEEEECGGGTTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHH----HHHHHHHHHcccchHHHHhcccccccccccCC
Confidence 35667888999999887 566677765432 01222122 345555555566555543321 00 1
Q ss_pred --CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE---c-C----CCHHH
Q 020304 195 --DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---L-G----ESDDD 264 (328)
Q Consensus 195 --~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG---l-g----Et~e~ 264 (328)
..+.++...++|++.+.+..- -.+.+.....++.+++ .|..+...+.+. . . -+.+.
T Consensus 197 ~~~~~~i~~a~~~Gvd~irIf~s------------~n~l~~l~~~i~~ak~--~G~~v~~~i~~~~d~~dp~r~~~~~e~ 262 (718)
T 3bg3_A 197 NVVFKFCEVAKENGMDVFRVFDS------------LNYLPNMLLGMEAAGS--AGGVVEAAISYTGDVADPSRTKYSLQY 262 (718)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECS------------SCCHHHHHHHHHHHHT--TTSEEEEEEECCSCTTCTTCCTTCHHH
T ss_pred cchHHHHHHHHhcCcCEEEEEec------------HHHHHHHHHHHHHHHH--cCCeEEEEEEeeccccCCCCCCCCHHH
Confidence 246788999999999876421 1245677788888898 898877666554 1 1 16788
Q ss_pred HHHHHHHHHhCCCCEEee
Q 020304 265 LKEAMADLRSIDVDILTL 282 (328)
Q Consensus 265 ~~~~l~~l~~l~~~~i~i 282 (328)
+.+.++.+.++|++.+.+
T Consensus 263 ~~~~a~~l~~~Ga~~I~l 280 (718)
T 3bg3_A 263 YMGLAEELVRAGTHILCI 280 (718)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 899999999999998877
No 90
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=89.16 E-value=2.8 Score=37.92 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 59 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 128 (332)
T 2r8w_A 59 ALIARLDAAEVDSVGILGSTGIY-------MYLTREERRRAIEAAATILRG---RRTLMAGIGALRTDEAVALAKDAEAA 128 (332)
T ss_dssp HHHHHHHHHTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 55666777888888763222221 135678888888877764344 12367888 55778888888999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcCCc
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIGFR 317 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G~~ 317 (328)
|+|.+-+. +|.+. + .+. +-++.+++++.+.++.
T Consensus 129 Gadavlv~-----~P~Y~---~-~s~~~l~~~f~~VA~a~~lP 162 (332)
T 2r8w_A 129 GADALLLA-----PVSYT---P-LTQEEAYHHFAAVAGATALP 162 (332)
T ss_dssp TCSEEEEC-----CCCSS---C-CCHHHHHHHHHHHHHHCSSC
T ss_pred CCCEEEEC-----CCCCC---C-CCHHHHHHHHHHHHHhcCCC
Confidence 99876552 23321 1 122 3345566666664443
No 91
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=88.96 E-value=2.5 Score=37.46 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 26 ~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 95 (292)
T 2ojp_A 26 KLIDYHVASGTSAIVSVGTTGES-------ATLNHDEHADVVMMTLDLADG---RIPVIAGTGANATAEAISLTQRFNDS 95 (292)
T ss_dssp HHHHHHHHHTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHhc
Confidence 44555666777776653222111 134566667776666553333 12267777 45667777777777777
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 96 Gadavlv 102 (292)
T 2ojp_A 96 GIVGCLT 102 (292)
T ss_dssp SCSEEEE
T ss_pred CCCEEEE
Confidence 7776544
No 92
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=88.93 E-value=3.1 Score=37.04 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.++++
T Consensus 36 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~ 105 (303)
T 2wkj_A 36 RLVQFNIQQGIDGLYVGGSTGEA-------FVQSLSEREQVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRY 105 (303)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECeeccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhC
Confidence 55667788899988763322221 135778888888877764333 12378888 45778888889999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcC
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIG 315 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G 315 (328)
|+|.+-+. +|.+. + .+. .-++.+++++.+.+
T Consensus 106 Gadavlv~-----~P~y~---~-~s~~~l~~~f~~va~a~~ 137 (303)
T 2wkj_A 106 GFDAVSAV-----TPFYY---P-FSFEEHCDHYRAIIDSAD 137 (303)
T ss_dssp TCSEEEEE-----CCCSS---C-CCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEec-----CCCCC---C-CCHHHHHHHHHHHHHhCC
Confidence 99976552 23321 1 123 33456667776644
No 93
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=88.78 E-value=1.1 Score=39.59 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCC
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGL 207 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~ 207 (328)
...+++|+.+.+.+..+.|+.-+++-.=+++.-+..+.+.+.++++.|++..|++-+...|.+...+ ++.+..+ +...
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~P 107 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKP 107 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCC
Confidence 4467888888888889999997766432222122234799999999999987888776544232222 4455555 4555
Q ss_pred cEEeech--------------hhHHHHHhhhcCCC-------CCHHHHHHHHHHHHHhCCCC---eEEEeEEEEc----C
Q 020304 208 DVFAHNI--------------ETVKRLQRIVRDPR-------AGYEQSLEVLKHAKLSKKGL---ITKSSIMLGL----G 259 (328)
Q Consensus 208 ~~i~~~~--------------et~~~~~~~~~~~~-------~~~~~~l~~i~~~~~~~~Gi---~v~~~~ivGl----g 259 (328)
+..+++. +.+.++.+.++..+ ++...... ++.+.+ .|+ .....+++|+ +
T Consensus 108 e~aSl~~Gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~-~~~l~~--~Gll~~p~~~~~vlGv~~g~~ 184 (284)
T 3chv_A 108 DMASLSVGSNNFPSRVYENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILR-AIDMHG--RGLLYGKLYVQFVMGVKNAMP 184 (284)
T ss_dssp SEEEECCSCEECSSSEECCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHHHH--TTCSCSSCEEEEEECCTTSCC
T ss_pred CEEEecCcccccCCccccCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHH-HHHHHH--cCCCCCCceEEEEEecCCCCC
Confidence 5555433 11222221111001 24444443 455556 676 4566677776 3
Q ss_pred CCHHHHHHHHHHHH
Q 020304 260 ESDDDLKEAMADLR 273 (328)
Q Consensus 260 Et~e~~~~~l~~l~ 273 (328)
-+.+++...++.+-
T Consensus 185 ~~~~~L~~~~~~~p 198 (284)
T 3chv_A 185 ADREVFDFYVRMMR 198 (284)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcc
Confidence 46777766666654
No 94
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=88.78 E-value=1.4 Score=38.42 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHH-hhhcCCCCCHHHHHHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ-RIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~-~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
..+.+.++++.+++. ++.++.|... +++.++.-++.|.++|-+.-..+-.-+ ..-. ...++.+.++.+.+++
T Consensus 140 ~~~~L~~~i~~L~~~--GIrVSLFIDp---d~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~--~~el~rl~~aA~~A~~ 212 (278)
T 3gk0_A 140 HFDAVRAACKQLADA--GVRVSLFIDP---DEAQIRAAHETGAPVIELHTGRYADAHDAAEQ--QREFERIATGVDAGIA 212 (278)
T ss_dssp THHHHHHHHHHHHHT--TCEEEEEECS---CHHHHHHHHHHTCSEEEECCHHHHTCSSHHHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCcCEEEEecchhhccCCchhH--HHHHHHHHHHHHHHHH
Confidence 468899999999987 7888887753 789999999999999987443332211 0000 1246778888888999
Q ss_pred hCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC-CCCEEeeeccc
Q 020304 244 SKKGLITKSSIMLGLGESDDDLKEAMADLRSI-DVDILTLGQYL 286 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l-~~~~i~i~~~l 286 (328)
.|+.|++ |+|-+.+.+... ..+ ++..+++...+
T Consensus 213 --lGL~VnA----GHGL~y~Nv~~i----a~ip~i~ElnIGHai 246 (278)
T 3gk0_A 213 --LGLKVNA----GHGLHYTNVQAI----AALPGIAELNIGHAI 246 (278)
T ss_dssp --TTCEEEE----CTTCCTTTHHHH----HTCTTEEEEEECHHH
T ss_pred --cCCEEec----CCCCCHHHHHHH----HhCCCCeEEecCHHH
Confidence 9998664 576666665432 222 34556665544
No 95
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=88.63 E-value=7.6 Score=33.49 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=85.0
Q ss_pred CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC--------CCCHHHHHHHHHcCCcEEeechhhHHH
Q 020304 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--------RGDLRAVETLVHSGLDVFAHNIETVKR 219 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~--------~~~~e~l~~L~~aG~~~i~~~~et~~~ 219 (328)
++.+-|.+|....++ .+.+.+.++..+++ ++.+. +.+. -.-++.++..++.|++.+-+|.-+.
T Consensus 39 ID~lKfg~Gt~~l~~---~~~l~eki~l~~~~--gV~v~--~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i-- 109 (251)
T 1qwg_A 39 IDFVKFGWGTSAVID---RDVVKEKINYYKDW--GIKVY--PGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSS-- 109 (251)
T ss_dssp CSEEEECTTGGGGSC---HHHHHHHHHHHHTT--TCEEE--ECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSS--
T ss_pred cceEEecCceeeecC---HHHHHHHHHHHHHc--CCeEE--CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcc--
Confidence 778889888765444 46788888888877 66663 2221 1247899999999999998875332
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--C-----CCHHHHHHHHHHHHhCCCCEEee
Q 020304 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-----ESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--g-----Et~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+.+++.+.++.+++ .|+.+.+.+ |- + .+.+++.+.++.-.+.|++.+.+
T Consensus 110 --------~l~~~~~~~~I~~~~~--~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAGA~~Vii 167 (251)
T 1qwg_A 110 --------DISLEERNNAIKRAKD--NGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAGADYVII 167 (251)
T ss_dssp --------CCCHHHHHHHHHHHHH--TTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred --------cCCHHHHHHHHHHHHH--CCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3578999999999999 999874433 54 2 36788888888888889998877
No 96
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=88.54 E-value=11 Score=32.62 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCcEEeech----------hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHH---
Q 020304 197 RAVETLVHSGLDVFAHNI----------ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDD--- 263 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~----------et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e--- 263 (328)
+.++.|.++|+|.+-++. .+-+...+... .+.+.+..++.++.+++.+..+++. +| +. .+.-
T Consensus 35 ~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~-~G~~~~~~~~~v~~ir~~~~~~Pv~--lm-~y-~n~v~~~ 109 (268)
T 1qop_A 35 KIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFA-AGVTPAQCFEMLAIIREKHPTIPIG--LL-MY-ANLVFNN 109 (268)
T ss_dssp HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSSSCEE--EE-EC-HHHHHTT
T ss_pred HHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCCCCCEE--EE-Ec-ccHHHHh
Confidence 456667777777766544 11111222222 2456677777777777632233321 12 11 1110
Q ss_pred HHHHHHHHHHhCCCCEEee
Q 020304 264 DLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 264 ~~~~~l~~l~~l~~~~i~i 282 (328)
...+.++.+.+.|++.+.+
T Consensus 110 g~~~~~~~~~~aGadgii~ 128 (268)
T 1qop_A 110 GIDAFYARCEQVGVDSVLV 128 (268)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 0134455566667775555
No 97
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=88.51 E-value=1.2 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT 189 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t 189 (328)
...+++|+.+.+.+..+.|+.-+++--=+++.-+..+.+.+.++++.|++..|++-+...|
T Consensus 25 lPvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Tt 85 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVST 85 (275)
T ss_dssp SCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 4567888888888889999987766432222122234789999999999988888776533
No 98
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=88.42 E-value=1.6 Score=37.94 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=74.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC-CCCCC-HHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-DFRGD-LRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~-~~~~~-~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++.+++.|++.|+|.--+++.- -+.+...++++... ++.+..-.. +...+ .+.++.|.+.|+++|.=+=
T Consensus 76 ~~Di~~~~~~GadGvV~G~Lt~dg~--iD~~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG 149 (256)
T 1twd_A 76 LEDVRTVRELGFPGLVTGVLDVDGN--VDMPRMEKIMAAAG----PLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSG 149 (256)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSS--BCHHHHHHHHHHHT----TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECT
T ss_pred HHHHHHHHHcCCCEEEEeeECCCCC--cCHHHHHHHHHHhC----CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCC
Confidence 5677788999999999854333222 23577777776554 345532111 11224 5789999999999987421
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
...+..+-++.++.+.+. ++ ...+|.|=|=+.+.+.+.+ +.|+..++.+
T Consensus 150 ------------~~~~a~~g~~~L~~Lv~~-a~---~i~Im~GgGv~~~Ni~~l~----~tGv~e~H~S 198 (256)
T 1twd_A 150 ------------QKSDALQGLSKIMELIAH-RD---APIIMAGAGVRAENLHHFL----DAGVLEVHSS 198 (256)
T ss_dssp ------------TSSSTTTTHHHHHHHHTS-SS---CCEEEEESSCCTTTHHHHH----HHTCSEEEEC
T ss_pred ------------CCCCHHHHHHHHHHHHHh-hC---CcEEEecCCcCHHHHHHHH----HcCCCeEeEC
Confidence 012233444555555442 33 3458888888877776643 6788888864
No 99
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=87.78 E-value=5.6 Score=35.45 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...|- .-+|+|. +.+.++..+..+.++++
T Consensus 39 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~gr---~pviaGvg~~~t~~ai~la~~A~~~ 108 (307)
T 3s5o_A 39 ENLHKLGTFPFRGFVVQGSNGEF-------PFLTSSERLEVVSRVRQAMPKN---RLLLAGSGCESTQATVEMTVSMAQV 108 (307)
T ss_dssp HHHHHHTTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHTSCTT---SEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHcCCC---CcEEEecCCCCHHHHHHHHHHHHHc
Confidence 45556667788887763333221 1356788888888777643331 2367788 46778888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|+|.+-+
T Consensus 109 Gadavlv 115 (307)
T 3s5o_A 109 GADAAMV 115 (307)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 100
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=87.49 E-value=2.3 Score=37.61 Aligned_cols=81 Identities=16% Similarity=0.040 Sum_probs=54.9
Q ss_pred CCCCCH----HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHH
Q 020304 191 DFRGDL----RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDL 265 (328)
Q Consensus 191 ~~~~~~----e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~ 265 (328)
++ +|. ..++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++.
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g---r~pvi~Gvg~~~t~~a 85 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEA-------TTMTETERKETIKFVIDKVNK---RIPVIAGTGSNNTAAS 85 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTT---SSCEEEECCCSSHHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCcccHHHH
Confidence 44 564 45666777899988763322221 135778888888877764344 12378888 5578888
Q ss_pred HHHHHHHHhCCCCEEee
Q 020304 266 KEAMADLRSIDVDILTL 282 (328)
Q Consensus 266 ~~~l~~l~~l~~~~i~i 282 (328)
.+..+.++++|+|.+-+
T Consensus 86 i~la~~a~~~Gadavlv 102 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLV 102 (291)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 88999999999987654
No 101
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=87.38 E-value=2.8 Score=36.21 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++.+.+.|++.+.++..+.+.... ....++++.+++.. ++.+.+ .++..+.+.++.+.++|++.+.++
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~---g~~~~~i~~i~~~~-~iPvi~--~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLT-TLPIIA--SGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSCSS---CCCHHHHHHHGGGC-CSCEEE--ESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccCCC---cccHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCCcHhhhh
Confidence 467888999999999999997643221111 12346677777663 566644 345557788888889999999886
Q ss_pred hhh
Q 020304 214 IET 216 (328)
Q Consensus 214 ~et 216 (328)
...
T Consensus 104 ~~~ 106 (266)
T 2w6r_A 104 SVF 106 (266)
T ss_dssp CCC
T ss_pred HHH
Confidence 543
No 102
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=87.36 E-value=2.3 Score=37.85 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC-CeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG-LITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~G-i~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ++ +|+|. +.+.++..+..+.+++
T Consensus 29 ~lv~~li~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~grvp----viaGvg~~~t~~ai~la~~a~~ 97 (300)
T 3eb2_A 29 RLCDDLIQAGVHGLTPLGSTGEF-------AYLGTAQREAVVRATIEAAQRRVP----VVAGVASTSVADAVAQAKLYEK 97 (300)
T ss_dssp HHHHHHHHTTCSCBBTTSGGGTG-------GGCCHHHHHHHHHHHHHHHTTSSC----BEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccCc-------cccCHHHHHHHHHHHHHHhCCCCc----EEEeCCCCCHHHHHHHHHHHHH
Confidence 45556667777776653222211 134566666666666553222 22 56666 4566677777777777
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
+|++.+-+
T Consensus 98 ~Gadavlv 105 (300)
T 3eb2_A 98 LGADGILA 105 (300)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 77776544
No 103
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=87.30 E-value=6.2 Score=35.25 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
...++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...| ..-+|+|. +.+.++..+..+.+++
T Consensus 31 ~~lv~~li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~ 100 (311)
T 3h5d_A 31 PALIEHLLAHHTDGILLAGTTAES-------PTLTHDEELELFAAVQKVVNG---RVPLIAGVGTNDTRDSIEFVKEVAE 100 (311)
T ss_dssp HHHHHHHHHTTCCCEEESSTTTTG-------GGSCHHHHHHHHHHHHHHSCS---SSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHh
Confidence 467777888898887763322221 135778888888887764333 13368888 5577888888888999
Q ss_pred CCC-CEEeeecccCCCCCCcccCCCCC-HHHHHHHHHHHHhcCCce
Q 020304 275 IDV-DILTLGQYLQPTPLHLTVKEYVT-PEKFDFWKAYGESIGFRY 318 (328)
Q Consensus 275 l~~-~~i~i~~~l~PTp~~~~~~~~~~-~~~~~~l~~~~~~~G~~~ 318 (328)
+|. +.+-+. +|.+. + .+ .+-++.+++++...++..
T Consensus 101 ~Ga~davlv~-----~P~y~---~-~s~~~l~~~f~~va~a~~lPi 137 (311)
T 3h5d_A 101 FGGFAAGLAI-----VPYYN---K-PSQEGMYQHFKAIADASDLPI 137 (311)
T ss_dssp SCCCSEEEEE-----CCCSS---C-CCHHHHHHHHHHHHHSCSSCE
T ss_pred cCCCcEEEEc-----CCCCC---C-CCHHHHHHHHHHHHHhCCCCE
Confidence 886 866552 22221 1 12 233455666666554433
No 104
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=87.18 E-value=4.7 Score=34.43 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHCCCcEEEE--Eecc-CCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 133 PMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l--~gg~-~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
...+.++++.+ +.|++.+++ ..|. .|.+. .-.++++.+++.. ..+.++..+.+ .+..++.++++|.|
T Consensus 12 ~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t-----~G~~~v~~lr~~~~~~~dvhLmv~d---p~~~i~~~~~aGAd 82 (231)
T 3ctl_A 12 LLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLT-----LSPFFVSQVKKLATKPLDCHLMVTR---PQDYIAQLARAGAD 82 (231)
T ss_dssp GGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCC-----BCHHHHHHHHTTCCSCEEEEEESSC---GGGTHHHHHHHTCS
T ss_pred hhhHHHHHHHH-HcCCCEEEEEEEeCccCccch-----hcHHHHHHHHhccCCcEEEEEEecC---HHHHHHHHHHcCCC
Confidence 34567788888 889886544 3333 22332 2235777787753 12445555442 24568999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
.+.+..|+.. . + ..++++.+++ .|+.+.. .+..+...+.+.+.+ + ++|.+-++ -+.|
T Consensus 83 ~itvh~Ea~~---------~-~---~~~~i~~i~~--~G~k~gv--~lnp~tp~~~~~~~l----~-~~D~Vlvm-sV~p 139 (231)
T 3ctl_A 83 FITLHPETIN---------G-Q---AFRLIDEIRR--HDMKVGL--ILNPETPVEAMKYYI----H-KADKITVM-TVDP 139 (231)
T ss_dssp EEEECGGGCT---------T-T---HHHHHHHHHH--TTCEEEE--EECTTCCGGGGTTTG----G-GCSEEEEE-SSCT
T ss_pred EEEECcccCC---------c-c---HHHHHHHHHH--cCCeEEE--EEECCCcHHHHHHHH----h-cCCEEEEe-eecc
Confidence 9998776520 1 2 2356777788 8987543 333333323222222 2 57777664 2335
Q ss_pred -CCCCcccCCCCCHHHHHHHHHHHHhcCC
Q 020304 289 -TPLHLTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 289 -Tp~~~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
+.. +....-..+.+.+++++..+.|+
T Consensus 140 Gfgg--Q~f~~~~l~kI~~lr~~~~~~~~ 166 (231)
T 3ctl_A 140 GFAG--QPFIPEMLDKLAELKAWREREGL 166 (231)
T ss_dssp TCSS--CCCCTTHHHHHHHHHHHHHHHTC
T ss_pred CcCC--ccccHHHHHHHHHHHHHHhccCC
Confidence 221 11222234445666666655443
No 105
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=86.20 E-value=8.9 Score=32.57 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=77.5
Q ss_pred CcEEEEEeCCCC-CC-HHHHHHHHHcCCcEEeechhhHH-HHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 182 DIMVECLTSDFR-GD-LRAVETLVHSGLDVFAHNIETVK-RLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 182 ~~~i~~~t~~~~-~~-~e~l~~L~~aG~~~i~~~~et~~-~~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
++++.+.+-... .+ ++.++.++++|++.+-+...... .-+ ...-....+.++..+.-+.+.+ .|+.+.+.-. .
T Consensus 9 ~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gl~i~~~~~-~ 85 (262)
T 3p6l_A 9 GWRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAAS--KGIKIVGTGV-Y 85 (262)
T ss_dssp TEEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHH--TTCEEEEEEE-E
T ss_pred CcEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHH--cCCeEEEEec-c
Confidence 456655443221 23 78999999999999987543210 000 0000013456666677777788 9998654432 2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 258 LGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 258 lgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
...+.+++.+.++.+.++|+..+.+. |. .+.+..+.+++.+.|++..
T Consensus 86 ~~~~~~~~~~~i~~A~~lGa~~v~~~----~~-----------~~~~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 86 VAEKSSDWEKMFKFAKAMDLEFITCE----PA-----------LSDWDLVEKLSKQYNIKIS 132 (262)
T ss_dssp CCSSTTHHHHHHHHHHHTTCSEEEEC----CC-----------GGGHHHHHHHHHHHTCEEE
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEec----CC-----------HHHHHHHHHHHHHhCCEEE
Confidence 35677889999999999999988873 21 1346778888888888753
No 106
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=86.15 E-value=5.8 Score=35.57 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCC-CeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKG-LITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~G-i~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
+.++.+.++|++.+.+.=-|.+- ...+.+++.+.++.+.+...| ++ +|+|. +.+.++..+..+.+++
T Consensus 36 ~lv~~li~~Gv~gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~grvp----viaGvg~~~t~~ai~la~~a~~ 104 (318)
T 3qfe_A 36 RYYAYLARSGLTGLVILGTNAEA-------FLLTREERAQLIATARKAVGPDFP----IMAGVGAHSTRQVLEHINDASV 104 (318)
T ss_dssp HHHHHHHTTTCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHCTTSC----EEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCccccCh-------hhCCHHHHHHHHHHHHHHhCCCCc----EEEeCCCCCHHHHHHHHHHHHH
Confidence 45666667777777653222221 134566777777666553222 23 56777 4577777777777777
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
+|+|.+-+
T Consensus 105 ~Gadavlv 112 (318)
T 3qfe_A 105 AGANYVLV 112 (318)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 77776544
No 107
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=86.08 E-value=19 Score=34.06 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=78.9
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.+..+.++.+.+.|++.+.+..... . .....+.++.+++..|++.+.. . ...+.+.++.+.++|+|.+.++
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G--~----~~~~~e~i~~i~~~~p~~pvi~-g--~~~t~e~a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHG--H----SRRVIETLEMIKADYPDLPVVA-G--NVATPEGTEALIKAGADAVKVG 306 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC--S----SHHHHHHHHHHHHHCTTSCEEE-E--EECSHHHHHHHHHTTCSEEEEC
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCC--c----hHHHHHHHHHHHHHCCCceEEe-C--CcCCHHHHHHHHHcCCCEEEEc
Confidence 3456788888999999888754322 1 3677889999999877766543 1 2247888999999999999875
Q ss_pred hhhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 214 IETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 214 ~et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.+.. .+...... ..+.+-..++.+.+++ .++++ |. |=-.+.+++.+.+ .+|++.+.+..
T Consensus 307 ~~~G~~~~~~~~~~~g--~p~~~~l~~v~~~~~~--~~ipv----ia~GGI~~~~di~kal----a~GAd~V~iGr 370 (494)
T 1vrd_A 307 VGPGSICTTRVVAGVG--VPQLTAVMECSEVARK--YDVPI----IADGGIRYSGDIVKAL----AAGAESVMVGS 370 (494)
T ss_dssp SSCSTTCHHHHHHCCC--CCHHHHHHHHHHHHHT--TTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESH
T ss_pred CCCCccccccccCCCC--ccHHHHHHHHHHHHhh--cCCCE----EEECCcCCHHHHHHHH----HcCCCEEEECH
Confidence 4321 11111111 1223333333333334 46653 32 2124667766655 36898887654
No 108
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=86.06 E-value=16 Score=31.50 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.+.++.+.+.|+..+.+...+. +..+..+++ +.+++.. ++.+. ..+++.++..+...+++|.|.+.++
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~--~f~G~~~~l----~~i~~~v-~lPvl--~kdfI~d~~qi~~a~~~GAD~VlL~ 135 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPH--RFGGSLLDL----KRVREAV-DLPLL--RKDFVVDPFMLEEARAFGASAALLI 135 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCS--SSCCCHHHH----HHHHHHC-CSCEE--EESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEecchh--hhccCHHHH----HHHHHhc-CCCEE--ECCcCCCHHHHHHHHHcCCCEEEEC
Confidence 5678999999999999887754332 333334443 3444442 45553 3677778988999999999999987
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
...++ ++..+.++.+++ .|+.+. +- -.+.+|.. .+.+++++.+.+++.
T Consensus 136 ~~~l~-------------~~l~~l~~~a~~--lGl~~l----ve-v~~~~E~~----~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 136 VALLG-------------ELTGAYLEEARR--LGLEAL----VE-VHTERELE----IALEAGAEVLGINNR 183 (254)
T ss_dssp HHHHG-------------GGHHHHHHHHHH--HTCEEE----EE-ECSHHHHH----HHHHHTCSEEEEESB
T ss_pred ccchH-------------HHHHHHHHHHHH--CCCeEE----EE-ECCHHHHH----HHHHcCCCEEEEccc
Confidence 64332 233455566667 687642 22 23555543 555678899988754
No 109
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=86.00 E-value=3.3 Score=35.43 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCCcEEeec
Q 020304 196 LRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ 213 (328)
++.++.++++|++.+-+.
T Consensus 17 ~~~l~~~~~~G~~~vEl~ 34 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIR 34 (278)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 445555555555555544
No 110
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=85.60 E-value=2.1 Score=40.23 Aligned_cols=137 Identities=9% Similarity=0.120 Sum_probs=69.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEec-cCCCC---C-CCcHHHHHHHHHHHHH---hCC-CcEEEEEeCCCCCCHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSV-DRDDI---P-DGGSGHFARTVKAMKK---QKP-DIMVECLTSDFRGDLRAVET 201 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l---~-~~~~~~l~~li~~ik~---~~~-~~~i~~~t~~~~~~~e~l~~ 201 (328)
.+.+++.+.++++.+.|+.-|-+.|. +.|.. + ..+.+++..+++.+++ ..+ ++.+++-| ...+++++
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT----~~~~Vaea 284 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDT----RKLEVMQK 284 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEEC----CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeC----CCHHHHHH
Confidence 56788899999999999997776541 11111 1 1134566677888887 222 56666533 25777777
Q ss_pred HHH--cCCcE-Ee-echhhHHHHHhhh----------cCCC--C-------------CHHHHHHHHHHHHHhCCCCe---
Q 020304 202 LVH--SGLDV-FA-HNIETVKRLQRIV----------RDPR--A-------------GYEQSLEVLKHAKLSKKGLI--- 249 (328)
Q Consensus 202 L~~--aG~~~-i~-~~~et~~~~~~~~----------~~~~--~-------------~~~~~l~~i~~~~~~~~Gi~--- 249 (328)
-.+ +|.+- ++ ++.+..+++.+.+ ...+ . -.+...+.++.+.+ .|+.
T Consensus 285 AL~~~aGa~i~INDVsg~~d~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~--aGI~~~~ 362 (442)
T 3mcm_A 285 ILAKHHDIIWMINDVECNNIEQKAQLIAKYNKKYVIIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLK--HGIAQQN 362 (442)
T ss_dssp HHHHHGGGCCEEEECCCTTHHHHHHHHHHHTCEEEEECC----------------CTHHHHHHHHHHHHHH--HTCCGGG
T ss_pred HHhhCCCCCEEEEcCCCCCChHHHHHHHHhCCeEEEECCCCCCccccccCcccHHHHHHHHHHHHHHHHHH--cCCCHHH
Confidence 777 77666 43 2211111221111 0000 0 13345567778888 8983
Q ss_pred EEEeEEEEcCCCHHHHHHHHHHHH
Q 020304 250 TKSSIMLGLGESDDDLKEAMADLR 273 (328)
Q Consensus 250 v~~~~ivGlgEt~e~~~~~l~~l~ 273 (328)
+..+--+|+|.|.++=.++++.+.
T Consensus 363 IilDPGiGF~Kt~~~nl~lL~~l~ 386 (442)
T 3mcm_A 363 IYFDIGFGFGKKSDTARYLLENII 386 (442)
T ss_dssp EEEECCCC------------CCHH
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHH
Confidence 666655677777666555554443
No 111
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=85.59 E-value=17 Score=33.24 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=72.0
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
+.+.++...|. +-+...+ +. .+.+.+.++.+|+.. .+.+.+.........+.++.+.++|++.+.++..
T Consensus 61 ~lA~avA~aGG--lg~i~~~---~s---~e~~~~~i~~vk~~~-~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta-- 129 (366)
T 4fo4_A 61 RLAIALAQEGG--IGFIHKN---MS---IEQQAAQVHQVKISG-GLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSS-- 129 (366)
T ss_dssp HHHHHHHHTTC--EEEECSS---SC---HHHHHHHHHHHHTTT-SCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECS--
T ss_pred HHHHHHHHcCC--ceEeecC---CC---HHHHHHHHHHHHhcC-ceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCC--
Confidence 55555555554 2232222 32 588888899998753 2333332221123589999999999998876420
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
....+.+++.++.+++.++++. ++.|..-|.++. +.+.+.|+|.+.+
T Consensus 130 ----------~G~~~~~~~~I~~ik~~~p~v~----Vi~G~v~t~e~A----~~a~~aGAD~I~v 176 (366)
T 4fo4_A 130 ----------HGHSEGVLQRIRETRAAYPHLE----IIGGNVATAEGA----RALIEAGVSAVKV 176 (366)
T ss_dssp ----------CTTSHHHHHHHHHHHHHCTTCE----EEEEEECSHHHH----HHHHHHTCSEEEE
T ss_pred ----------CCCCHHHHHHHHHHHHhcCCCc----eEeeeeCCHHHH----HHHHHcCCCEEEE
Confidence 1123577888888888555765 344555566654 4456779999887
No 112
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=85.51 E-value=8.2 Score=34.43 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
..++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+.. | ..-+|+|. +.+.++..+..+.++++
T Consensus 33 ~lv~~li~~Gv~Gl~v~GtTGE~-------~~Lt~~Er~~v~~~~v~~~-g---rvpViaGvg~~~t~~ai~la~~A~~~ 101 (313)
T 3dz1_A 33 RLTDFYAEVGCEGVTVLGILGEA-------PKLDAAEAEAVATRFIKRA-K---SMQVIVGVSAPGFAAMRRLARLSMDA 101 (313)
T ss_dssp HHHHHHHHTTCSEEEESTGGGTG-------GGSCHHHHHHHHHHHHHHC-T---TSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEeCccCcCh-------hhCCHHHHHHHHHHHHHHc-C---CCcEEEecCCCCHHHHHHHHHHHHHc
Confidence 56777788899988764333221 1357888888888887743 3 23378888 56888888889999999
Q ss_pred CCCEEeeecccCCCCCCcccCCCCCH-HHHHHHHHHHHhcC
Q 020304 276 DVDILTLGQYLQPTPLHLTVKEYVTP-EKFDFWKAYGESIG 315 (328)
Q Consensus 276 ~~~~i~i~~~l~PTp~~~~~~~~~~~-~~~~~l~~~~~~~G 315 (328)
|++.+-+. .| .+. .+. .-++.+++++.+.+
T Consensus 102 Gadavlv~---~P--~~~-----~s~~~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 102 GAAGVMIA---PP--PSL-----RTDEQITTYFRQATEAIG 132 (313)
T ss_dssp TCSEEEEC---CC--TTC-----CSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEC---CC--CCC-----CCHHHHHHHHHHHHHhCC
Confidence 99876552 12 211 122 33455667776654
No 113
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=85.37 E-value=2.4 Score=37.49 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+-- +. ++.+.+.++.++..++.+.+++ +++ ++++.+..+++.|+|.+.+|-
T Consensus 204 ~eea~eal~aGaD~I~LDn-----~~---~~~~~~~v~~l~~~~~~v~iea--SGG-It~~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 204 LEQLDAVLPEKPELILLDN-----FA---VWQTQTAVQRRDSRAPTVMLES--SGG-LSLQTAATYAETGVDYLAVGA 270 (284)
T ss_dssp HHHHHHHGGGCCSEEEEET-----CC---HHHHHHHHHHHHHHCTTCEEEE--ESS-CCTTTHHHHHHTTCSEEECGG
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhhccCCCeEEEE--ECC-CCHHHHHHHHhcCCCEEEECH
Confidence 5777888888998776631 33 5888889998888666677765 344 389999999999999998753
No 114
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=85.36 E-value=7.1 Score=34.65 Aligned_cols=136 Identities=14% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCchHHHHHHHHHCCCcEEEEEecc-CCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVD-RDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~-~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
.+.+.+.++++.+.|+.-|-+.|.. .|... ..+.+++..+++.+++.. ++.+++-|. +.++++.-.++|.
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~----~~~V~~aAl~aGa 136 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTY----KAEVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECS----CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCC----CHHHHHHHHHcCC
Confidence 4567788888899999988776421 12111 123455666778888763 566655442 6788888888888
Q ss_pred cEEee-chhh-----H---HHHH-hhh--cCCC-CC--------HHHHHHHHHHHHHhCCCCe---EEEeEEEEcCCCHH
Q 020304 208 DVFAH-NIET-----V---KRLQ-RIV--RDPR-AG--------YEQSLEVLKHAKLSKKGLI---TKSSIMLGLGESDD 263 (328)
Q Consensus 208 ~~i~~-~~et-----~---~~~~-~~~--~~~~-~~--------~~~~l~~i~~~~~~~~Gi~---v~~~~ivGlgEt~e 263 (328)
+-++- +.+. + .+.. ..+ ...+ .. .+...+.++.+.+ .|+. +..+--+|+|.+.+
T Consensus 137 ~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~--~GI~~~~IilDPg~Gfgk~~~ 214 (297)
T 1tx2_A 137 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKD--AGVRDENIILDPGIGFAKTPE 214 (297)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCTTSSCCHH
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHH--cCCChhcEEEeCCCCcCCCHH
Confidence 77752 2111 1 1111 000 0000 01 2455667777888 9996 77776667788888
Q ss_pred HHHHHHHHHHhC
Q 020304 264 DLKEAMADLRSI 275 (328)
Q Consensus 264 ~~~~~l~~l~~l 275 (328)
+-.++++.+.++
T Consensus 215 ~n~~ll~~l~~l 226 (297)
T 1tx2_A 215 QNLEAMRNLEQL 226 (297)
T ss_dssp HHHHHHHTGGGG
T ss_pred HHHHHHHHHHHH
Confidence 766777666654
No 115
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=85.13 E-value=9.4 Score=32.42 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=50.3
Q ss_pred CCchHHHHHHHHHCC-CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G-~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
|....+.++.+...| ++.+.+.+.++..-.....+.-.+-++.+++..+++.+.+ .++ ++.+.+..+.++|.|.+-
T Consensus 123 p~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V--dGG-I~~~ti~~~~~aGAd~~V 199 (227)
T 1tqx_A 123 PKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV--DGG-LNIETTEISASHGANIIV 199 (227)
T ss_dssp TTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE--ESS-CCHHHHHHHHHHTCCEEE
T ss_pred CCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEE--ECC-CCHHHHHHHHHcCCCEEE
Confidence 333344556666655 8888887766532111112445566777777655666654 344 489999999999999988
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
.+
T Consensus 200 ~G 201 (227)
T 1tqx_A 200 AG 201 (227)
T ss_dssp ES
T ss_pred Ee
Confidence 76
No 116
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=84.95 E-value=4.7 Score=36.05 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCC-C---C--CcHHHHHHHHHHHHHhCCC-cEEEEEeCC----CCCCH-HH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI-P---D--GGSGHFARTVKAMKKQKPD-IMVECLTSD----FRGDL-RA 198 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l-~---~--~~~~~l~~li~~ik~~~~~-~~i~~~t~~----~~~~~-e~ 198 (328)
.+.+++.+.+..+.+.|++.|+...|+++.. . + .++++..++++.|++...+ +.+.+.... ..-+. ..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 3556788888999999999998888886533 1 1 1255788899988886323 555432221 11132 22
Q ss_pred H---HHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 020304 199 V---ETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 199 l---~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
+ ++=.++|.+.+.- . .-++.+.+.+.++.+++ .|+
T Consensus 163 ~~~Lk~Kv~aGAdf~iT---------Q----~ffD~~~~~~f~~~~r~--~Gi 200 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAIT---------Q----LFFNNAHYFGFLERARR--AGI 200 (310)
T ss_dssp HHHHHHHHHHHCSEEEE---------C----CCSCHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCCCEEEe---------c----ccCCHHHHHHHHHHHHH--cCC
Confidence 3 3334678775431 0 13455666666666666 664
No 117
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=84.89 E-value=2.9 Score=36.13 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHh----hhcCC--------------
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQR----IVRDP-------------- 227 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~----~~~~~-------------- 227 (328)
.+.+.++++.+++. ++.++.|... +++.++.-++.|.+++-+.-..+-..+. -+...
T Consensus 110 ~~~L~~~i~~L~~~--GIrVSLFIDp---d~~qi~aA~~~GAd~IELhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~ 184 (260)
T 3o6c_A 110 HAKLKQSIEKLQNA--NIEVSLFINP---SLEDIEKSKILKAQFIELHTGHYANLHNALFSNISHTAFALKELDQDKKTL 184 (260)
T ss_dssp CTTHHHHHHHHHHT--TCEEEEEECS---CHHHHHHHHHTTCSEEEECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHH
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCCCEEEEechHhhhhhhccccccccccccccccccccchh
Confidence 57899999999987 7888887753 7899999999999999874433322110 00000
Q ss_pred ----CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 228 ----RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 228 ----~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
...++.+.++.+.+++ .|+.|++ |+|-+.+.+... . +=-++..+++.+.+
T Consensus 185 ~~~~~~el~~l~~aA~~A~~--lGL~VnA----GHGL~y~Nv~~i-a--~ip~i~ElnIGHai 238 (260)
T 3o6c_A 185 QAQFEKELQNLELCAKKGLE--LGLKVAA----GHGLNYKNVKPV-V--KIKEICELNIGQSI 238 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCEEEE----CTTCCTTTTHHH-H--TCTTCCEEEECHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--cCCEEec----CCCCCHHHHHHH-H--hCCCCeEEecCHHH
Confidence 1234566777778888 9998654 677676666532 1 11245666665544
No 118
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=84.62 E-value=12 Score=33.91 Aligned_cols=44 Identities=16% Similarity=-0.005 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-CCHHHHHHHHHHHHh
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-ESDDDLKEAMADLRS 274 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-Et~e~~~~~l~~l~~ 274 (328)
.+.++.++..+.+.+ .|..-..-+.-.+ . -|.+++.++++.+.+
T Consensus 102 ~st~eai~la~~A~~--~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 102 VNTASAVAHAVHAQK--VGAKGLMVIPRVLSRGSVIAAQKAHFKAILS 147 (344)
T ss_dssp SSHHHHHHHHHHHHH--HTCSEEEECCCCSSSTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCCEEEECCCccCCCCCHHHHHHHHHHHHh
Confidence 345555555555555 5544111000011 2 455666666655544
No 119
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=84.31 E-value=3 Score=37.47 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=43.8
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccC-CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIPDGGSGHFARTVKAMKKQKPDIMVECLT 189 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t 189 (328)
...+++|+.+.+.+..+.|+.-+++-.=++ +.-+..+.+.+.++++.|++..+++-+...|
T Consensus 43 lPvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TT 104 (316)
T 3c6c_A 43 MPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTC 104 (316)
T ss_dssp CCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCC
Confidence 446788888888888999999776643232 1122335799999999999877787776544
No 120
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=84.25 E-value=6 Score=35.08 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=78.5
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCCc
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~~ 208 (328)
+.+++.+.+.++.+.+.|++.+.+..... +. .+....++++.+++..|++.+.+. .++.-+.......-.++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G--~~--~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~ 230 (302)
T 2ftp_A 155 DVDPRQVAWVARELQQMGCYEVSLGDTIG--VG--TAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIA 230 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEESSS--CC--CHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC--Cc--CHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCC
Confidence 34567788999999999999998864332 11 268899999999988765544432 23332344555555689999
Q ss_pred EEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 209 ~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+..++..+-+ -+..-+......++.+..++ . .|+.+ |-..+.+.++.+++.+
T Consensus 231 ~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~---~--~g~~~--------~idl~~l~~~~~~~~~ 284 (302)
T 2ftp_A 231 VFDSSVAGLGGCPYAKGATGNVASEDVLYLLN---G--LEIHT--------GVDMHALVDAGQRICA 284 (302)
T ss_dssp EEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEecccccCCCCCCCCCCCChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 99886644321 11111112345677666654 3 45542 3355666666666654
No 121
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=84.19 E-value=25 Score=32.11 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=80.4
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+..+.++.+.+.|++.++|..... . .+.+.+.++.+++.+|++.+...+ ..+.+.++.+.++|+|.+.++.
T Consensus 108 ~~~~~~~~lieaGvd~I~idta~G--~----~~~~~~~I~~ik~~~p~v~Vi~G~---v~t~e~A~~a~~aGAD~I~vG~ 178 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDSSHG--H----SEGVLQRIRETRAAYPHLEIIGGN---VATAEGARALIEAGVSAVKVGI 178 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCT--T----SHHHHHHHHHHHHHCTTCEEEEEE---ECSHHHHHHHHHHTCSEEEECS
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCC--C----CHHHHHHHHHHHHhcCCCceEeee---eCCHHHHHHHHHcCCCEEEEec
Confidence 356778888999999888854322 1 267888999999988887764321 1478999999999999998843
Q ss_pred hhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+.. .+...... ......+.++.+.+++ .++++ |..=| -+.+++.+.+ .+|++.+.+...+
T Consensus 179 gpGs~~~tr~~~g~g--~p~~~~l~~v~~~~~~--~~iPV----IA~GGI~~~~di~kal----a~GAd~V~vGs~f 243 (366)
T 4fo4_A 179 GPGSICTTRIVTGVG--VPQITAIADAAGVANE--YGIPV----IADGGIRFSGDISKAI----AAGASCVMVGSMF 243 (366)
T ss_dssp SCSTTBCHHHHHCCC--CCHHHHHHHHHHHHGG--GTCCE----EEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred CCCCCCCcccccCcc--cchHHHHHHHHHHHhh--cCCeE----EEeCCCCCHHHHHHHH----HcCCCEEEEChHh
Confidence 211 11111111 1233344444444445 56663 33113 3566665544 4699988886544
No 122
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=83.74 E-value=2.5 Score=37.16 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++++++.+.|+..|.+.. +. ++.+.++++.++..+|++.+.+ .+++ +++.+..+.++|+|.+.++-
T Consensus 193 ee~~~A~~aGaD~I~ld~-----~~---~~~l~~~v~~l~~~~~~~~i~A--sGGI-~~~ni~~~~~aGaD~i~vGs 258 (273)
T 2b7n_A 193 EEAKNAMNAGADIVMCDN-----LS---VLETKEIAAYRDAHYPFVLLEA--SGNI-SLESINAYAKSGVDAISVGA 258 (273)
T ss_dssp HHHHHHHHHTCSEEEEET-----CC---HHHHHHHHHHHHHHCTTCEEEE--ESSC-CTTTHHHHHTTTCSEEECTH
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhhccCCCcEEEE--ECCC-CHHHHHHHHHcCCcEEEEcH
Confidence 566666778998888742 22 5888888888887778888865 3443 89999999999999998864
No 123
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=83.24 E-value=21 Score=32.43 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+...+.++++.+.|..-|-++- ++ +.-.+.++.|++.. .+.+.+ +...+...+..-.++|++.+.+
T Consensus 45 ~~atv~Qi~~l~~aG~diVRvav------p~---~~~a~al~~I~~~~-~vPlva---DiHf~~~lal~a~e~G~dklRI 111 (366)
T 3noy_A 45 VEATLNQIKRLYEAGCEIVRVAV------PH---KEDVEALEEIVKKS-PMPVIA---DIHFAPSYAFLSMEKGVHGIRI 111 (366)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEC------CS---HHHHHHHHHHHHHC-SSCEEE---ECCSCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC------CC---hHHHHHHHHHHhcC-CCCEEE---eCCCCHHHHHHHHHhCCCeEEE
Confidence 34456778888899999887752 21 34467888898874 455543 4335788888888999999988
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE---------c-CCCHHHH----HHHHHHHHhCCCC
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG---------L-GESDDDL----KEAMADLRSIDVD 278 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG---------l-gEt~e~~----~~~l~~l~~l~~~ 278 (328)
|+--. + +.+++.+.++.+++ .|+.+..++=-| + +.|.+.+ .+.++.++++|++
T Consensus 112 NPGNi----------g-~~~~~~~vv~~ak~--~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~ 178 (366)
T 3noy_A 112 NPGNI----------G-KEEIVREIVEEAKR--RGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFT 178 (366)
T ss_dssp CHHHH----------S-CHHHHHHHHHHHHH--HTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccc----------C-chhHHHHHHHHHHH--cCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 75321 0 23556677777888 777754332222 2 2555443 3456677777876
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+-+
T Consensus 179 ~ivi 182 (366)
T 3noy_A 179 NYKV 182 (366)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5444
No 124
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=83.12 E-value=27 Score=31.75 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhC
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSK 245 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 245 (328)
.+.+.+.++.+++.. .+.+.+.... .+.+.++.+.++|++.+.++.. ..+.+.+++.++.+++.+
T Consensus 80 ~e~~~~~I~~vk~~~-~~pvga~ig~--~~~e~a~~l~eaGad~I~ld~a------------~G~~~~~~~~i~~i~~~~ 144 (361)
T 3khj_A 80 MESQVNEVLKVKNSG-GLRVGAAIGV--NEIERAKLLVEAGVDVIVLDSA------------HGHSLNIIRTLKEIKSKM 144 (361)
T ss_dssp HHHHHHHHHHHHHTT-CCCCEEEECT--TCHHHHHHHHHTTCSEEEECCS------------CCSBHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc-CceEEEEeCC--CHHHHHHHHHHcCcCeEEEeCC------------CCCcHHHHHHHHHHHHhc
Confidence 577888899888762 3333332221 1389999999999998877531 112366778888887733
Q ss_pred CCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 246 KGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 246 ~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
++.+ ++|...|.++ ++.+.+.|+|.+.+
T Consensus 145 -~~~V----ivg~v~t~e~----A~~l~~aGaD~I~V 172 (361)
T 3khj_A 145 -NIDV----IVGNVVTEEA----TKELIENGADGIKV 172 (361)
T ss_dssp -CCEE----EEEEECSHHH----HHHHHHTTCSEEEE
T ss_pred -CCcE----EEccCCCHHH----HHHHHHcCcCEEEE
Confidence 6653 4444456654 46677899999887
No 125
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=82.98 E-value=2.4 Score=37.85 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++++++.+.|+..|.+.. .. ++.+.++++.++..+|++.+.+ ++++ +++.+..+.++|+|.+.++-
T Consensus 208 ee~~~A~~aGaD~I~ld~-----~~---~~~l~~~v~~l~~~~~~~~I~A--SGGI-t~~ni~~~~~aGaD~i~vGs 273 (299)
T 2jbm_A 208 QEAVQAAEAGADLVLLDN-----FK---PEELHPTATVLKAQFPSVAVEA--SGGI-TLDNLPQFCGPHIDVISMGM 273 (299)
T ss_dssp HHHHHHHHTTCSEEEEES-----CC---HHHHHHHHHHHHHHCTTSEEEE--ESSC-CTTTHHHHCCTTCCEEECTH
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhhccCCCeeEEE--ECCC-CHHHHHHHHHCCCCEEEECh
Confidence 566677778998888743 22 5888888888887778888865 3444 89999999999999998854
No 126
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=82.83 E-value=19 Score=32.27 Aligned_cols=138 Identities=15% Similarity=0.104 Sum_probs=85.1
Q ss_pred CchHHHHHHHH-HCCCcEEEEEec-cCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCHHHHHHHHHcCCcE-
Q 020304 134 MEPENTAKAIA-SWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RGDLRAVETLVHSGLDV- 209 (328)
Q Consensus 134 ~ei~~~~~~~~-~~G~~~i~l~gg-~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~-~~~~e~l~~L~~aG~~~- 209 (328)
+++.+.+++.. +.|++-|-+.+. ..|...+...+...++++.+.+.. ++.+++-..+. ..+.++++.-.++|.+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~ 158 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGEN 158 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCC
Confidence 45788888887 899998887532 223232334577888899888763 67776541110 12578888888888542
Q ss_pred --E-eechhhHHHHHhhhc--------CCCCCHHHHHHHHHHHHHhCCCCe---EEEeEEEE-cCCCHHHHHHHHHHHHh
Q 020304 210 --F-AHNIETVKRLQRIVR--------DPRAGYEQSLEVLKHAKLSKKGLI---TKSSIMLG-LGESDDDLKEAMADLRS 274 (328)
Q Consensus 210 --i-~~~~et~~~~~~~~~--------~~~~~~~~~l~~i~~~~~~~~Gi~---v~~~~ivG-lgEt~e~~~~~l~~l~~ 274 (328)
+ .++.+..+.+...+. -...+.+-..+.++.+.+ .|+. +..+-.+| +|-+.++-.++++.++.
T Consensus 159 ~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~--~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 159 LLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINE--MNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp CEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHT--TTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred CeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHH--cCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 2 223332233221111 001245556666677888 9993 66666667 58888988888888875
No 127
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=82.31 E-value=23 Score=31.37 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH---HhCCCcEEEEEeCCCCCCHHHHHHHHH--cC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK---KQKPDIMVECLTSDFRGDLRAVETLVH--SG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik---~~~~~~~i~~~t~~~~~~~e~l~~L~~--aG 206 (328)
+.+.+.+.+++..+.|+.-+-+.+|..+ .. ..+.+..++..+. +. .++.+++-|. ..++++.-.+ +|
T Consensus 35 ~~~~a~~~A~~~v~~GAdiIDIg~g~~~-v~--~~eem~rvv~~i~~~~~~-~~vpisIDT~----~~~V~eaaL~~~~G 106 (300)
T 3k13_A 35 KYDEALSIARQQVEDGALVIDVNMDDGL-LD--ARTEMTTFLNLIMSEPEI-ARVPVMIDSS----KWEVIEAGLKCLQG 106 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCTT-SC--HHHHHHHHHHHHHTCHHH-HTSCEEEECS----CHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCC-CC--HHHHHHHHHHHHHHhhhc-CCCeEEEeCC----CHHHHHHHHHhcCC
Confidence 4567788999999999998888765432 22 2344555555544 33 3566655442 5777777777 67
Q ss_pred CcEEe
Q 020304 207 LDVFA 211 (328)
Q Consensus 207 ~~~i~ 211 (328)
.+-++
T Consensus 107 a~iIN 111 (300)
T 3k13_A 107 KSIVN 111 (300)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66543
No 128
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=82.14 E-value=24 Score=30.43 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEEEEe--CCCC--C
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVECLT--SDFR--G 194 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------~~~l~~li~~ik~~~~~~~i~~~t--~~~~--~ 194 (328)
++..+.++.+.+.|++.+-+..--.+.+.|+. .+...++++.+++..|++.+.+++ +... .
T Consensus 31 ~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g 110 (262)
T 2ekc_A 31 ETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIG 110 (262)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhh
Confidence 45678899999999998877321111122221 135668899999886566765532 1100 0
Q ss_pred CHHHHHHHHHcCCcEEee
Q 020304 195 DLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~ 212 (328)
.++.++.++++|++.+.+
T Consensus 111 ~~~f~~~~~~aG~dgvii 128 (262)
T 2ekc_A 111 LEKFCRLSREKGIDGFIV 128 (262)
T ss_dssp HHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 257889999999998876
No 129
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=82.10 E-value=14 Score=33.27 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEe-CCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT-SDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t-~~~~~~~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++.+.+.|+..|.+.+...-.. +..+.++++.+++..| ++.+.+.+ ++.-+--...-.-.++|++.
T Consensus 147 ~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~ 222 (345)
T 1nvm_A 147 PAEKLAEQGKLMESYGATCIYMADSGGAMS----MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDR 222 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECTTCCCC----HHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCccC----HHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCE
Confidence 456678899999999999999875443212 6899999999999875 66665533 33222333444445789998
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+-..
T Consensus 223 vd~t 226 (345)
T 1nvm_A 223 VDAS 226 (345)
T ss_dssp EEEB
T ss_pred EEec
Confidence 8653
No 130
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=81.93 E-value=3.7 Score=35.64 Aligned_cols=111 Identities=10% Similarity=-0.050 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE----------------EEc-
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM----------------LGL- 258 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i----------------vGl- 258 (328)
++.++.++++|++.+-+..... . ..+.++..+.-+.+.+ .|+.+.+... +|.
T Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~----~-----~~~~~~~~~~~~~l~~--~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~ 92 (290)
T 3tva_A 24 GVHLEVAQDLKVPTVQVHAPHP----H-----TRTREHAQAFRAKCDA--AGIQVTVIFGGFDGESYADIPTTARTVGLV 92 (290)
T ss_dssp SBCHHHHHHTTCSEEEEECCCG----G-----GCSHHHHHHHHHHHHH--TTCEEEEEECCCTTCCCSSHHHHHHHSSSC
T ss_pred HHHHHHHHHcCCCEEEecCCCC----C-----cCCHHHHHHHHHHHHH--cCCEEEEEeeccCCcccccccccccccCCC
Confidence 6788888888888887754211 0 1234455555556667 8887554321 011
Q ss_pred -CC----CHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 259 -GE----SDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 259 -gE----t~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+ ..+.+.+.++.++++|+..+.+..-..|.... ..-....+.+.++.+++.+.|++..
T Consensus 93 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~--~~~~~~~~~l~~l~~~a~~~Gv~l~ 156 (290)
T 3tva_A 93 PLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSS--PDYSELVRVTQDLLTHAANHGQAVH 156 (290)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTS--HHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccch--HHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 23556777888888888887763211121100 0000012335566666777787643
No 131
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=81.69 E-value=8.7 Score=33.37 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEEEEe--CC-C-CC
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVECLT--SD-F-RG 194 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------~~~l~~li~~ik~~~~~~~i~~~t--~~-~-~~ 194 (328)
++..+.++.+.+.|++.+.+..--.+.+.|+. .+...++++.+++.++++.+..++ +. . ..
T Consensus 31 ~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g 110 (268)
T 1qop_A 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNG 110 (268)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhh
Confidence 45678899999999998877321111122221 133457899999874456665433 21 1 01
Q ss_pred CHHHHHHHHHcCCcEEeec
Q 020304 195 DLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~ 213 (328)
.++.++.++++|++.+.+.
T Consensus 111 ~~~~~~~~~~aGadgii~~ 129 (268)
T 1qop_A 111 IDAFYARCEQVGVDSVLVA 129 (268)
T ss_dssp HHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 3688999999999988763
No 132
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=81.62 E-value=12 Score=33.72 Aligned_cols=99 Identities=12% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++.+.+.|+..|.|.....- . .+..+.++++.+++..|++.+.+- .++.-+- ...+..+ ++|++.
T Consensus 167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-~---~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv-~aGa~~ 241 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLPDTLGV-L---SPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAI-RAGVKG 241 (337)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEECTTCC-C---CHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHH-HTTCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC-c---CHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHH-HhCCCE
Confidence 4566788999999999999998533221 1 268999999999998776555442 2332222 3444444 679999
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHH
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~ 240 (328)
+-.++-.+- ... .....++.+..++.
T Consensus 242 vd~tv~GlG---~~a--GN~~~E~lv~~L~~ 267 (337)
T 3ble_A 242 LHASINGLG---ERA--GNTPLEALVTTIHD 267 (337)
T ss_dssp EEEBGGGCS---STT--CBCBHHHHHHHHHH
T ss_pred EEEeccccc---ccc--cchhHHHHHHHHHH
Confidence 876543321 111 23567777777654
No 133
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=81.18 E-value=37 Score=35.98 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHHC--CCcEEEEEeccCC-----CCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC--CC----C----
Q 020304 132 DPMEPENTAKAIASW--GVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSD--FR----G---- 194 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~--G~~~i~l~gg~~~-----~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~--~~----~---- 194 (328)
+.++..++++.+.+. |+..+-..||... .+. +.=.+.++.+++..|+..+..+..+ .. .
T Consensus 553 ~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~----e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v 628 (1150)
T 3hbl_A 553 RTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLK----ENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNV 628 (1150)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSC----CCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHH
T ss_pred CHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccC----CCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchh
Confidence 345667788888777 9998877765421 122 1224566777777788777655422 11 1
Q ss_pred CHHHHHHHHHcCCcEEee
Q 020304 195 DLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~ 212 (328)
.++.++..+++|++.+.+
T Consensus 629 ~~~~v~~a~~~Gvd~iri 646 (1150)
T 3hbl_A 629 IHKFVQESAKAGIDVFRI 646 (1150)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCcCEEEE
Confidence 245688999999999876
No 134
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=81.12 E-value=18 Score=34.13 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=44.7
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+++..|++-|.+.... +. .+.+.++++..++. ++.+.+-. .+.+.++...++|.+-+.+
T Consensus 122 Qi~ea~~~GAD~ILLi~a~---l~---~~~l~~l~~~a~~l--gm~~LvEv----h~~eE~~~A~~lga~iIGi 183 (452)
T 1pii_A 122 QIYLARYYQADACLLMLSV---LD---DDQYRQLAAVAHSL--EMGVLTEV----SNEEEQERAIALGAKVVGI 183 (452)
T ss_dssp HHHHHHHTTCSEEEEETTT---CC---HHHHHHHHHHHHHT--TCEEEEEE----CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEEEccc---CC---HHHHHHHHHHHHHc--CCeEEEEe----CCHHHHHHHHHCCCCEEEE
Confidence 3555888999998886432 43 37899999998886 55543322 2778888888999988776
No 135
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=81.05 E-value=30 Score=30.92 Aligned_cols=135 Identities=15% Similarity=0.032 Sum_probs=76.3
Q ss_pred HHHHHHCCCcEEEEE-eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE--e------CCC-------CC---------
Q 020304 140 AKAIASWGVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL--T------SDF-------RG--------- 194 (328)
Q Consensus 140 ~~~~~~~G~~~i~l~-gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~--t------~~~-------~~--------- 194 (328)
.+.+++.|+..|.+. -+++. -...+.+++.++++..++. |+++.+- - |+. ..
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~-~g~~~~~~~~~~~~~A~~~--GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~ 109 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPA-DGNYNLDYNIAIAKRAKAA--GLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKL 109 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCT-TCTTSHHHHHHHHHHHHHT--TCEEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHH
T ss_pred HHHHHHCCCCEEEEeeeeCCC-CCcCCHHHHHHHHHHHHHC--CCEEEEEeccCCCcCCccccCCccccccchHHHHHHH
Confidence 455678999988764 23321 1112368888899999987 5555431 1 110 00
Q ss_pred ---CHHHHHHHHHcC--CcEEeechhhHHHHH-hhhcCCCCCHHHHH----HHHHHHHHhC--CCCeEEEeEEEEc--CC
Q 020304 195 ---DLRAVETLVHSG--LDVFAHNIETVKRLQ-RIVRDPRAGYEQSL----EVLKHAKLSK--KGLITKSSIMLGL--GE 260 (328)
Q Consensus 195 ---~~e~l~~L~~aG--~~~i~~~~et~~~~~-~~~~~~~~~~~~~l----~~i~~~~~~~--~Gi~v~~~~ivGl--gE 260 (328)
+.++++.|++.| ++.+.++.|+...+. ... ...+++... +.++.+|+.. ++.. +++.+ |.
T Consensus 110 ~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g--~~~~~~~~~~l~~~~~~avR~~~~~p~~~----v~ih~~~~~ 183 (332)
T 1hjs_A 110 YNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTG--RTENWANIARLLHSAAWGIKDSSLSPKPK----IMIHLDNGW 183 (332)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTE--ETTCHHHHHHHHHHHHHHHHTSCCSSCCE----EEEEESCTT
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCC--CccCHHHHHHHHHHHHHHHHHhccCCCCe----EEEEeCCcc
Confidence 137788999888 677778888654321 100 012344333 3344456644 3333 45555 55
Q ss_pred CHHHHHHHHHHHHhCC------CCEEeee
Q 020304 261 SDDDLKEAMADLRSID------VDILTLG 283 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~------~~~i~i~ 283 (328)
..+.+...++.+.+.| +|.+.++
T Consensus 184 ~~~~~~~~~d~~~~~g~~~~~~~DvIG~s 212 (332)
T 1hjs_A 184 DWGTQNWWYTNVLKQGTLELSDFDMMGVS 212 (332)
T ss_dssp CHHHHHHHHHHHHTTSSSCGGGCCEEEEE
T ss_pred chHHHHHHHHHHHhcCCCCCCCcCEEEEe
Confidence 6666666667676555 6788885
No 136
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=80.83 E-value=3.3 Score=35.95 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHH--HHHHHHHHHHhCCCCEEee
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDD--DLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e--~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.++.++.++.+++ . +++ ++.|.-.... -+.+.++.+++.|++-+-+
T Consensus 72 g~~~~~~~~~~~~~r~--~-~Pi---vlm~Y~N~i~~~G~e~F~~~~~~aGvdG~Ii 122 (252)
T 3tha_A 72 GVDIHSVFELLARIKT--K-KAL---VFMVYYNLIFSYGLEKFVKKAKSLGICALIV 122 (252)
T ss_dssp TCCHHHHHHHHHHCCC--S-SEE---EEECCHHHHHHHCHHHHHHHHHHTTEEEEEC
T ss_pred CCCHHHHHHHHHHHhc--C-CCE---EEEeccCHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 5566666666666654 2 221 2222211111 1344556666666665443
No 137
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=80.80 E-value=1.9 Score=38.21 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+-- +. ++.+.++++.++..++.+.+++ +++ ++.+.+..+++.|+|.+.++-
T Consensus 203 leea~eA~~aGaD~I~LDn-----~~---~e~l~~av~~l~~~~~~v~ieA--SGG-It~eni~~~a~tGVD~IsvGs 269 (285)
T 1o4u_A 203 LEDALRAVEAGADIVMLDN-----LS---PEEVKDISRRIKDINPNVIVEV--SGG-ITEENVSLYDFETVDVISSSR 269 (285)
T ss_dssp HHHHHHHHHTTCSEEEEES-----CC---HHHHHHHHHHHHHHCTTSEEEE--EEC-CCTTTGGGGCCTTCCEEEEGG
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhhccCCCceEEE--ECC-CCHHHHHHHHHcCCCEEEEeH
Confidence 5778888889998877732 33 5888888998887666777765 333 388999999999999998754
No 138
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=80.75 E-value=16 Score=32.82 Aligned_cols=169 Identities=16% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.+..+++.+.+.+..-|.-.+ +.. .|. +.+.+..+++...+.+.++.+.+ ..|.-.+.+.+....++|++++-
T Consensus 28 ~e~~~Ail~AAee~~sPvIlq~s~g~~-~y~--g~~~~~~~v~~aa~~~~~VPVal-HlDHg~~~e~i~~ai~~GFtSVM 103 (323)
T 2isw_A 28 MEQIQGIMKAVVQLKSPVILQCSRGAL-KYS--DMIYLKKLCEAALEKHPDIPICI-HLDHGDTLESVKMAIDLGFSSVM 103 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHH-HHT--TTHHHHHHHHHHHHHCTTSCEEE-EEEEECSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHH-HhC--CHHHHHHHHHHHHHhcCCCcEEE-ECCCCCCHHHHHHHHHcCCCeEE
Confidence 35566777777777776443332 221 122 24777888888777645666643 33443478999999999999988
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE--EEEcCCC-------HHHHHHHHHHHHhCCCCEEee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI--MLGLGES-------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~--ivGlgEt-------~e~~~~~l~~l~~l~~~~i~i 282 (328)
++...++ + ..+.+...+.++.+++ .|+.|-+-+ +=|. |. ..+-.+..+|+++.|+|.+.+
T Consensus 104 iDgS~~p-~-------eENi~~Tk~vv~~ah~--~gvsVEaELG~vgg~-Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAv 172 (323)
T 2isw_A 104 IDASHHP-F-------DENVRITKEVVAYAHA--RSVSVEAELGTLGGI-EEDVQNTVQLTEPQDAKKFVELTGVDALAV 172 (323)
T ss_dssp ECCTTSC-H-------HHHHHHHHHHHHHHHT--TTCEEEEEESCC-----------CCCCCHHHHHHHHHHHCCSEEEE
T ss_pred ecCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEEeCCccCC-ccCcccccccCCHHHHHHHHHHHCCCEEEE
Confidence 7532211 0 0123445677888888 888765432 3222 21 123456778899999998777
Q ss_pred ecccCCCCCCc-c--cCCC--CCHHHHHHHHHHHHhcCCceeeec
Q 020304 283 GQYLQPTPLHL-T--VKEY--VTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 283 ~~~l~PTp~~~-~--~~~~--~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
. + -|--.. . ..+. +. ++.|+++....++..|-=|
T Consensus 173 a-i--Gt~HG~Yk~~~~p~~~L~---~~~L~~I~~~~~vpLVlHG 211 (323)
T 2isw_A 173 A-I--GTSHGAYKFKSESDIRLA---IDRVKTISDLTGIPLVMHG 211 (323)
T ss_dssp C-S--SCCSSSBCCCC----CCC---CHHHHHHHHHHCSCEEECS
T ss_pred e-c--CccccccCCCCCcccccC---HHHHHHHHHHhCCCeEEEC
Confidence 2 3 222110 0 1122 33 4566666666677777554
No 139
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=80.41 E-value=18 Score=32.32 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=53.9
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccC-CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC--CC-HHHHHHHHH
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GD-LRAVETLVH 204 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~--~~-~e~l~~L~~ 204 (328)
...+++|+.+.+.+..+.|+.-+++-.=++ +.-+..+.+.+.++++.|++.. ++-+.. |++.. .+ ++.+..+.+
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~-d~iI~~-TTgg~~~~~~eerla~~~~ 104 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNT-DAVINL-TTGGSPHMTVEERLRPATH 104 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHC-CCEEEE-CSCSCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC-CcEEEE-CCCCCCCCCHHHHHHHHHh
Confidence 456788888888888999998776643231 1122335789999999999985 454443 33322 23 566777766
Q ss_pred cCCcEEeec
Q 020304 205 SGLDVFAHN 213 (328)
Q Consensus 205 aG~~~i~~~ 213 (328)
...+..+++
T Consensus 105 ~~Pe~aSln 113 (311)
T 3e49_A 105 YMPELASLN 113 (311)
T ss_dssp HCCSEEEEE
T ss_pred cCCCeeeec
Confidence 566665553
No 140
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=80.34 E-value=7 Score=34.97 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCCCCchHHHHHHHHHCCCcEEEEEeccC-CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC--CC-HHHHHHHHH
Q 020304 129 APPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GD-LRAVETLVH 204 (328)
Q Consensus 129 ~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~--~~-~e~l~~L~~ 204 (328)
...+++|+.+.+.+..+.|+.-+++-.=++ +.-+..+.+.+.++++.|++.. ++-+.. |++.. .+ ++.+..+.+
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~-d~iI~~-TTgg~~~~~~eerla~~~~ 104 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERT-DAILNI-TTGGGLGMSLDERLAPARA 104 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHC-CCEEEE-CSSCSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC-CcEEEE-CCCCCCCCCHHHHHHHHHh
Confidence 456788888888888999998776643231 1122335789999999999985 454443 33321 23 567777766
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
...+..++
T Consensus 105 ~~Pe~aSl 112 (311)
T 3e02_A 105 ARPEVASM 112 (311)
T ss_dssp HCCSEEEE
T ss_pred cCCCeeee
Confidence 56665554
No 141
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=79.94 E-value=9.2 Score=34.93 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=78.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
....+.++.+.+.|++-+.+..... . .+.+.+.++.+++..|++.+..- ...+.+.++.+.++|+|.+.++
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G--~----~~~~~e~I~~ir~~~~~~~Vi~G---~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA--H----AKYVGKTLKSLRQLLGSRCIMAG---NVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC--S----SHHHHHHHHHHHHHHTTCEEEEE---EECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC--C----cHhHHHHHHHHHHhcCCCeEEEc---CcCCHHHHHHHHHcCCCEEEEc
Confidence 3456778888999999766643221 2 26778899999998777777541 1247899999999999999875
Q ss_pred hhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 214 IETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 214 ~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.....- ..+...+.+.. .+..+..+.+ .-- -+|. |=-.+.+++.+.+. +|++.+.+...+
T Consensus 170 ~g~G~~~~tr~~~g~g~p---~l~aI~~~~~--~~~----PVIAdGGI~~~~di~kALa----~GAd~V~iGr~f 231 (361)
T 3r2g_A 170 IGGGSVCSTRIKTGFGVP---MLTCIQDCSR--ADR----SIVADGGIKTSGDIVKALA----FGADFVMIGGML 231 (361)
T ss_dssp CSSSSCHHHHHHHCCCCC---HHHHHHHHTT--SSS----EEEEESCCCSHHHHHHHHH----TTCSEEEESGGG
T ss_pred CCCCcCccccccCCccHH---HHHHHHHHHH--hCC----CEEEECCCCCHHHHHHHHH----cCCCEEEEChHH
Confidence 432100 01111111222 3455555554 221 2232 21245677665543 799988886544
No 142
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=79.78 E-value=25 Score=29.71 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=61.8
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
...+.++.+.+.|+..+.+++...+.... +.+ .++++.+++.. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 153 ~~~e~~~~~~~~G~~~i~~~~~~~~g~~~-g~~--~~~i~~l~~~~-~ipvia--~GGI~~~~d~~~~~~~Gadgv~vg- 225 (252)
T 1ka9_F 153 HAVEWAVKGVELGAGEILLTSMDRDGTKE-GYD--LRLTRMVAEAV-GVPVIA--SGGAGRMEHFLEAFQAGAEAALAA- 225 (252)
T ss_dssp EHHHHHHHHHHHTCCEEEEEETTTTTTCS-CCC--HHHHHHHHHHC-SSCEEE--ESCCCSHHHHHHHHHTTCSEEEES-
T ss_pred cHHHHHHHHHHcCCCEEEEecccCCCCcC-CCC--HHHHHHHHHHc-CCCEEE--eCCCCCHHHHHHHHHCCCHHHHHH-
Confidence 44677888888999999988644321111 111 45666777653 555543 455557788888889999999876
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
..+++ ...++++.++. +.+ .|+.+.
T Consensus 226 ---sal~~----~~~~~~~~~~~---l~~--~~~~~~ 250 (252)
T 1ka9_F 226 ---SVFHF----GEIPIPKLKRY---LAE--KGVHVR 250 (252)
T ss_dssp ---HHHHT----TSSCHHHHHHH---HHH--TTCCBC
T ss_pred ---HHHHc----CCCCHHHHHHH---HHH--CCCCcC
Confidence 23333 24467766555 456 777653
No 143
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=79.51 E-value=10 Score=32.93 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=52.3
Q ss_pred EeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC--CCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 252 SSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP--TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 252 ~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P--Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
..+|.|. .++.+...+.++.+++.|++.+.+. +..| |+..+ ..+..+.+..+++++.+.|+.+.+.
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~-~fkprts~~~~---~g~~~egl~~l~~~~~~~Gl~~~te 93 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGG-AFKPRTSPYSF---QGYGEKALRWMREAADEYGLVTVTE 93 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECB-SSCCCSSTTSC---CCCTHHHHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEE-ecccCCCcccc---cCccHHHHHHHHHHHHHcCCcEEEe
Confidence 4578888 8899999999999999999998884 4456 44332 2345888999999999999988765
No 144
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=79.21 E-value=18 Score=30.58 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=61.9
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
...+.++.+.+.|+..+.+++.+.+.... ++ -.++++.+++.. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 152 ~~~e~~~~~~~~G~~~i~~~~~~~~g~~~-g~--~~~~~~~l~~~~-~ipvia--~GGI~~~~d~~~~~~~Gadgv~vG- 224 (253)
T 1thf_D 152 LLRDWVVEVEKRGAGEILLTSIDRDGTKS-GY--DTEMIRFVRPLT-TLPIIA--SGGAGKMEHFLEAFLAGADAALAA- 224 (253)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTSCS-CC--CHHHHHHHGGGC-CSCEEE--ESCCCSHHHHHHHHHTTCSEEEES-
T ss_pred CHHHHHHHHHHCCCCEEEEEeccCCCCCC-CC--CHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHHcCChHHHHH-
Confidence 45677888889999999998755432211 11 145666676653 555543 456556788888889999999886
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
..+++ ...++++.++. +++ .|+.+.
T Consensus 225 ---sal~~----~~~~~~~~~~~---l~~--~g~~~~ 249 (253)
T 1thf_D 225 ---SVFHF----REIDVRELKEY---LKK--HGVNVR 249 (253)
T ss_dssp ---HHHHT----TCSCHHHHHHH---HHH--TTCCCC
T ss_pred ---HHHHc----CCCCHHHHHHH---HHH--cCCccc
Confidence 23333 13456655554 456 777653
No 145
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=79.13 E-value=26 Score=30.34 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc--CCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a--G~~~ 209 (328)
+.+.+.+.++++.+.|+.-+-+.||..+ . ...+.+.+++..+++. .++.+++-|. +.++++.-.++ |.+-
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g~~~-v--~~~ee~~rvv~~i~~~-~~~pisIDT~----~~~v~~aAl~a~~Ga~i 94 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVGPAV-Q--DKVSAMEWLVEVTQEV-SNLTLCLDST----NIKAIEAGLKKCKNRAM 94 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC-------CHHHHHHHHHHHHHTT-CCSEEEEECS----CHHHHHHHHHHCSSCEE
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC-C--ChHHHHHHHHHHHHHh-CCCeEEEeCC----CHHHHHHHHhhCCCCCE
Confidence 4566788888899999998888765321 2 1357788888888875 3677766442 67888887777 8776
Q ss_pred Ee
Q 020304 210 FA 211 (328)
Q Consensus 210 i~ 211 (328)
++
T Consensus 95 IN 96 (262)
T 1f6y_A 95 IN 96 (262)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 146
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=79.01 E-value=7.6 Score=32.98 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEE--Eecc-CCCCCCCcHHHHHHHHHHHHHhC-CC--cEEEEEeCCCCCCHHHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQK-PD--IMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l--~gg~-~~~l~~~~~~~l~~li~~ik~~~-~~--~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
+...+.++++.+.+.|++.+++ ..|. .|.+.- + .++++.+++.+ ++ +.++...++ ....++.++++
T Consensus 15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~-G----~~~v~~ir~~~~~~~~~dvhLmv~~---p~~~i~~~~~a 86 (228)
T 3ovp_A 15 DLANLGAECLRMLDSGADYLHLDVMDGHFVPNITF-G----HPVVESLRKQLGQDPFFDMHMMVSK---PEQWVKPMAVA 86 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCB-C----HHHHHHHHHHHCSSSCEEEEEECSC---GGGGHHHHHHH
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCCcCccccc-C----HHHHHHHHHhhCCCCcEEEEEEeCC---HHHHHHHHHHc
Confidence 4456678889999999986655 3232 122321 1 34566666663 33 344444432 24678999999
Q ss_pred CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 206 G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
|.|.+++..|+.+ + ..+.++.+++ .|+.+
T Consensus 87 Gad~itvH~Ea~~-----------~---~~~~i~~i~~--~G~k~ 115 (228)
T 3ovp_A 87 GANQYTFHLEATE-----------N---PGALIKDIRE--NGMKV 115 (228)
T ss_dssp TCSEEEEEGGGCS-----------C---HHHHHHHHHH--TTCEE
T ss_pred CCCEEEEccCCch-----------h---HHHHHHHHHH--cCCCE
Confidence 9999999776421 2 2355666677 88764
No 147
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=78.81 E-value=28 Score=31.86 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=97.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC-----CCCHHHHHHHHHcCC
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-----RGDLRAVETLVHSGL 207 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~-----~~~~e~l~~L~~aG~ 207 (328)
.++..+.++.+.+.|+++|+-.--.+..-...-.+.+.++++..++. ++.+.+-.+.. -.+.+.+..|++.|+
T Consensus 16 ~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lGi 93 (372)
T 2p0o_A 16 TNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAE--KMKIMVDISGEALKRAGFSFDELEPLIELGV 93 (372)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHH--TCEEEEEECHHHHHTTTCBTTBCHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHcCC
Confidence 34556788889999999874432111111111247888889988888 56654422211 124466778899999
Q ss_pred cEEee----chhhHHHHHhhh----cCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCC
Q 020304 208 DVFAH----NIETVKRLQRIV----RDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 208 ~~i~~----~~et~~~~~~~~----~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~ 277 (328)
+.+.+ +.+....|-+.+ .-...+ .+.++.+.....-+..+..+-++--=- |-+.+.+.+.-++++++|+
T Consensus 94 ~glRLD~Gf~~~eia~ls~nlkIeLNASti~-~~~l~~l~~~~~n~~~l~a~HNFYPr~~TGLs~~~f~~~n~~~k~~Gi 172 (372)
T 2p0o_A 94 TGLRMDYGITIEQMAHASHKIDIGLNASTIT-LEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGL 172 (372)
T ss_dssp CEEEECSSCCHHHHHHHHTTSEEEEETTTCC-HHHHHHHHHTTCCGGGEEEECCCCCSTTCSBCHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCHHHHHHHhcCCEEEEECccCC-HHHHHHHHHcCCChHHeEEeeccCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99987 222222232111 101113 333444432211111233333443211 6689999999999999998
Q ss_pred CEEeeecccCC--CCCC-----cccCCCCCHHHHHHHHHHHHhcCCceeeecc
Q 020304 278 DILTLGQYLQP--TPLH-----LTVKEYVTPEKFDFWKAYGESIGFRYVASGP 323 (328)
Q Consensus 278 ~~i~i~~~l~P--Tp~~-----~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~ 323 (328)
....|-+--.. -|++ ......+++ +.+.+.+...-++-.|.+|.
T Consensus 173 ~t~AFI~g~~~~rGPl~eGLPTLE~HR~~~~--~~~a~~L~~~~~iD~V~IGd 223 (372)
T 2p0o_A 173 QVFTFVPGDGQTRGPIFAGLPTLEKHRGQNP--FAAAVGLMADPYVDAVYIGD 223 (372)
T ss_dssp EEEEEECCSSSCCTTTCSCCCSBGGGTTSCH--HHHHHHHHHSTTCCEEEECS
T ss_pred cEEEEecCCCccCCCccCCCCchHHhCCCCH--HHHHHHHHhcCCCCEEEECC
Confidence 76543211000 1221 111233344 34455555555788888874
No 148
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=78.79 E-value=6.2 Score=35.33 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCCCCCCchHHHHHHHHHCCCcEEEEEeccC-CCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC-CC--C-HHHHHHH
Q 020304 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDR-DDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RG--D-LRAVETL 202 (328)
Q Consensus 128 ~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~-~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~-~~--~-~e~l~~L 202 (328)
....+++|+.+.+.+..+.|+.-+++-.=++ +.-+..+.+.+.++++.|++. +++-+...|.+. .. + ++.+..+
T Consensus 26 ~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~-~d~iI~~TTgg~~~~~~~~eeR~~~~ 104 (314)
T 3lot_A 26 YLPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQ-SDVVINVTTGGGGTLGIPVEERAKVV 104 (314)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHH-CCCEEEECSSTTGGGTCCHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhc-CCeEEEeCCCCcCCCCCCHHHHHHHH
Confidence 3456788998888889999998766643232 112233578999999999998 677665433221 12 3 4566666
Q ss_pred HHcCCcEEeec
Q 020304 203 VHSGLDVFAHN 213 (328)
Q Consensus 203 ~~aG~~~i~~~ 213 (328)
.+...+..+++
T Consensus 105 ~~~~Pe~aSln 115 (314)
T 3lot_A 105 PALKPEIATFN 115 (314)
T ss_dssp HHHCCSEEEEE
T ss_pred HhcCCceeeec
Confidence 66565555543
No 149
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=78.46 E-value=29 Score=29.22 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHCCCcEEEEEe--ccCCCCCCC---------------cHHHHHHHHHHHHHhCCCcEEEEEe--CC-CC
Q 020304 134 MEPENTAKAIASWGVDYIVLTS--VDRDDIPDG---------------GSGHFARTVKAMKKQKPDIMVECLT--SD-FR 193 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~---------------~~~~l~~li~~ik~~~~~~~i~~~t--~~-~~ 193 (328)
++..+.++.+.+. ++.+.+.- .++ ..|+ +.....++++.+++.. ++.+...+ +. +.
T Consensus 19 ~~~~~~a~~~~~~-ad~iel~~p~sdp--~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~~~~~~~ 94 (248)
T 1geq_A 19 QSTLNFLLALDEY-AGAIELGIPFSDP--IADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYR 94 (248)
T ss_dssp HHHHHHHHHHGGG-BSCEEEECCCSCC--TTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEeccchhhh
Confidence 3667888888777 88777651 111 1222 2345678889998863 45555443 11 00
Q ss_pred -CCHHHHHHHHHcCCcEEeech
Q 020304 194 -GDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 194 -~~~e~l~~L~~aG~~~i~~~~ 214 (328)
..++.++.+.++|++.+.++.
T Consensus 95 ~~~~~~~~~~~~~Gad~v~~~~ 116 (248)
T 1geq_A 95 AGVRNFLAEAKASGVDGILVVD 116 (248)
T ss_dssp HCHHHHHHHHHHHTCCEEEETT
T ss_pred cCHHHHHHHHHHCCCCEEEECC
Confidence 015899999999999999864
No 150
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=78.15 E-value=24 Score=34.77 Aligned_cols=139 Identities=12% Similarity=0.056 Sum_probs=79.1
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC---CCcEEEEEeCCCCCC-HHHHHHHHHcC
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~---~~~~i~~~t~~~~~~-~e~l~~L~~aG 206 (328)
++.++-+++++.+.+.|+++|-... | ... ... .+.++.|.+.. ++..+.+++.....+ +..++.++.+|
T Consensus 90 ~s~eeKl~Ia~~L~~lGVd~IEaGf--P-~as---p~D-~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a~ 162 (644)
T 3hq1_A 90 MSPARKRRMFDLLVRMGYKEIEVGF--P-SAS---QTD-FDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAP 162 (644)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEC--T-TTC---HHH-HHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--C-CCC---hhH-HHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcCC
Confidence 4567778999999999999887642 2 232 223 33456665542 367777766531101 23456777889
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHH----HHHHHhCCC-CeEEEeEEEEc----CCCHHHHHHHHHHHHhC--
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVL----KHAKLSKKG-LITKSSIMLGL----GESDDDLKEAMADLRSI-- 275 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i----~~~~~~~~G-i~v~~~~ivGl----gEt~e~~~~~l~~l~~l-- 275 (328)
.+.+.+-.-+.+-..+..- +.+.++.++.+ +.+++...+ +.+..++.++. .-..+-+.+.++.+.++
T Consensus 163 ~~~Vhif~stSd~h~~~~l--~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~ 240 (644)
T 3hq1_A 163 RAIVHFYNSTSILQRRVVF--RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIA 240 (644)
T ss_dssp EEEEEEEEECCHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcC
Confidence 8888886666665322211 45777766644 344441111 11223344433 12456666888888775
Q ss_pred -CCC
Q 020304 276 -DVD 278 (328)
Q Consensus 276 -~~~ 278 (328)
|++
T Consensus 241 ~Gad 244 (644)
T 3hq1_A 241 PTPE 244 (644)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 466
No 151
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=78.07 E-value=12 Score=34.25 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 197 RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
+.++.+.++|++.+.+.=.|.+- ...+.+++.+.++.+.+...|- .-+|+|. +.+.++..+..+.+++.
T Consensus 84 ~lv~~li~~Gv~Gl~v~GTTGE~-------~~Ls~eEr~~vi~~~ve~~~gr---vpViaGvg~~st~eai~la~~A~~~ 153 (360)
T 4dpp_A 84 DLVNIQIQNGAEGVIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGGS---IKVIGNTGSNSTREAIHATEQGFAV 153 (360)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTT---SEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEecccccCh-------hhCCHHHHHHHHHHHHHHhCCC---CeEEEecCCCCHHHHHHHHHHHHHc
Confidence 45666778888887763322221 1346777777777766533331 2267788 46788888888888888
Q ss_pred CCCEEee
Q 020304 276 DVDILTL 282 (328)
Q Consensus 276 ~~~~i~i 282 (328)
|++.+-+
T Consensus 154 Gadavlv 160 (360)
T 4dpp_A 154 GMHAALH 160 (360)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8887655
No 152
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=78.02 E-value=7.8 Score=34.76 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=47.5
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+-. +. ++.+.+.++.++ +.+.+++ +++ ++++.++.+++.|+|.+.+|-
T Consensus 241 ldea~eAl~aGaD~I~LDn-----~~---~~~l~~av~~l~---~~v~iea--SGG-It~~~I~~~a~tGVD~isvGa 304 (320)
T 3paj_A 241 LAELEEAISAGADIIMLDN-----FS---LEMMREAVKINA---GRAALEN--SGN-ITLDNLKECAETGVDYISVGA 304 (320)
T ss_dssp HHHHHHHHHTTCSEEEEES-----CC---HHHHHHHHHHHT---TSSEEEE--ESS-CCHHHHHHHHTTTCSEEECTH
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhC---CCCeEEE--ECC-CCHHHHHHHHHcCCCEEEECc
Confidence 4677777888998888732 22 477777777665 3567765 344 499999999999999999864
No 153
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=77.95 E-value=6.9 Score=34.47 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=76.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~--~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
.+++++.+.++.+.+.|++.+.+..... + ..+....++++.+++..++ +.+++ .++.-+.......-.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~Dt~G--~--~~P~~~~~lv~~l~~~~~~~~l~~H~-Hn~~Gla~an~l~Ai~aG~~ 226 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGDTIG--R--GTPDTVAAMLDAVLAIAPAHSLAGHY-HDTGGRALDNIRVSLEKGLR 226 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEETTS--C--CCHHHHHHHHHHHHTTSCGGGEEEEE-BCTTSCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCCC--C--cCHHHHHHHHHHHHHhCCCCeEEEEE-CCCcchHHHHHHHHHHhCCC
Confidence 3567788999999999999998863222 1 2368999999999988765 44443 23322334444455578999
Q ss_pred EEeechhhHHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 209 VFAHNIETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 209 ~i~~~~et~~~--~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
.+..++..+-+ +-.. +......++.+..++ + .|+.+ |-..+.+.++.+++.++
T Consensus 227 ~vd~sv~GlG~cp~a~g-~~GN~~~e~lv~~l~---~--~g~~~--------~id~~~l~~~~~~~~~~ 281 (295)
T 1ydn_A 227 VFDASVGGLGGCPFAPG-AKGNVDTVAVVEMLH---E--MGFET--------GLDLDRLRSAGLFTQAL 281 (295)
T ss_dssp EEEEBTTCCSCBTTBTT-SCCBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCCCC-CcCChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHHH
Confidence 98876533211 1111 112345676666654 4 56543 23456666666666653
No 154
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=77.89 E-value=10 Score=32.81 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-----EcCC--------C
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-----GLGE--------S 261 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-----GlgE--------t 261 (328)
++.++.++++|++.+-+....... ... ...+.++..+.-+.+.+ .|+.+.+.-.. .++. .
T Consensus 33 ~~~l~~~~~~G~~~iEl~~~~~~~~~~~----~~~~~~~~~~~~~~l~~--~gl~i~~~~~~~~~~~~l~~~d~~~r~~~ 106 (295)
T 3cqj_A 33 LERLQLAKTLGFDFVEMSVDETDERLSR----LDWSREQRLALVNAIVE--TGVRVPSMCLSAHRRFPLGSEDDAVRAQG 106 (295)
T ss_dssp HHHHHHHHHTTCSEEEEECCSSHHHHGG----GGCCHHHHHHHHHHHHH--HCCEEEEEEEGGGGTSCTTCSSHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCcccccCc----ccCCHHHHHHHHHHHHH--cCCeEEEEecCcccCCCCCCCCHHHHHHH
Confidence 678888888898888775432221 111 12345555555566677 88875432111 1221 1
Q ss_pred HHHHHHHHHHHHhCCCCEEee
Q 020304 262 DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 262 ~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.+.+.++.+.++|+..+.+
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~ 127 (295)
T 3cqj_A 107 LEIMRKAIQFAQDVGIRVIQL 127 (295)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 345777788888888888766
No 155
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=77.80 E-value=17 Score=30.97 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+...+.+.++++.+.|+.++++|+.+.+-...+ ++ .++++.+.+..+++.+.+ .++..+.+-++.|+ .+++.+
T Consensus 148 ~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G-~d--~~l~~~l~~~~~~ipvia--sGGv~~~~Dl~~l~-~~~~gv 221 (243)
T 4gj1_A 148 ASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQG-VN--VRLYKLIHEIFPNICIQA--SGGVASLKDLENLK-GICSGV 221 (243)
T ss_dssp --CCBHHHHHHHHHTTTCCEEEEEETTC-----C-CC--HHHHHHHHHHCTTSEEEE--ESCCCSHHHHHHTT-TTCSEE
T ss_pred cccchHHHHHHHHhhcCCcEEEeeeecccccccC-CC--HHHHHHHHHhcCCCCEEE--EcCCCCHHHHHHHH-ccCchh
Confidence 3445678889999999999999998665433221 11 356777777666777754 45555778788885 457766
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHH
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVL 238 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i 238 (328)
.++ ..+|. ...+.++.++.+
T Consensus 222 ivg----~Al~~----g~i~l~ea~~~l 241 (243)
T 4gj1_A 222 IVG----KALLD----GVFSVEEGIRCL 241 (243)
T ss_dssp EEC----HHHHT----TSSCHHHHHHHH
T ss_pred ehH----HHHHC----CCCCHHHHHHHh
Confidence 654 34554 367888877765
No 156
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=77.66 E-value=4.8 Score=35.74 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+- .++ ++.+.+.++.++. .+.+++ +++ ++.+.+..+++.|+|.++++.
T Consensus 217 l~e~~eAl~aGaDiImLD-----n~s---~~~l~~av~~~~~---~v~lea--SGG-It~~~i~~~A~tGVD~IsvGa 280 (300)
T 3l0g_A 217 ISQVEESLSNNVDMILLD-----NMS---ISEIKKAVDIVNG---KSVLEV--SGC-VNIRNVRNIALTGVDYISIGC 280 (300)
T ss_dssp HHHHHHHHHTTCSEEEEE-----SCC---HHHHHHHHHHHTT---SSEEEE--ESS-CCTTTHHHHHTTTCSEEECGG
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHhhcC---ceEEEE--ECC-CCHHHHHHHHHcCCCEEEeCc
Confidence 578888888999888773 233 5788888887763 466665 344 388999999999999999754
No 157
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=77.28 E-value=48 Score=31.08 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=94.3
Q ss_pred CCCCchHHHHHHH-HHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-CCCCHHHHHHHHHcC-C
Q 020304 131 PDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-FRGDLRAVETLVHSG-L 207 (328)
Q Consensus 131 ~~~~ei~~~~~~~-~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-~~~~~e~l~~L~~aG-~ 207 (328)
.+++|..+..+.+ .+.+ -+.| +.| +...+++.+..+-+.+.. .+.+.. .+ +.-+++.++.+.+.+ +
T Consensus 281 ~t~~Elid~y~~lle~yp--Iv~I---EDP-l~~dD~eg~a~Lt~~lg~---~iqIvG--DDl~vTn~~~i~~~Ie~~a~ 349 (452)
T 3otr_A 281 LTGEKLKEVYEGWLKKYP--IISV---EDP-FDQDDFASFSAFTKDVGE---KTQVIG--DDILVTNILRIEKALKDKAC 349 (452)
T ss_dssp ECHHHHHHHHHHHHHHSC--EEEE---ECC-SCTTCHHHHHHHHHHHTT---TSEEEE--STTTTTCHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHhhhC--ceEE---ecC-CChhhHHHHHHHHHhhCC---CeEEEe--CccccCCHHHHHHHHhcCCC
Confidence 3455666666554 3343 2233 222 444445666665555432 255522 22 222577777766666 7
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
+.+.+.+ .+ -.+.-+.+++++.+++ .|+. .|+|. |||++.+. .++...++...+-..
T Consensus 350 n~IlIKv------nQ-----IGgITEalka~~lA~~--~G~~----vmvshrSGETeD~~i--AdLaVgl~~gqIKtG-- 408 (452)
T 3otr_A 350 NCLLLKV------NQ-----IGSVTEAIEACLLAQK--SGWG----VQVSHRSGETEDSFI--ADLVVGLRCGQIKSG-- 408 (452)
T ss_dssp SEEEECH------HH-----HCCHHHHHHHHHHHHH--TTCE----EEEECCSSCCSCCHH--HHHHHHTTCCEEECC--
T ss_pred CEEEeec------cc-----cccHHHHHHHHHHHHH--cCCe----EEEeCCCCCCchhHH--HHHHHHcCCCccccC--
Confidence 7777643 22 2368899999999999 9987 58888 99998875 455666776655442
Q ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 286 LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 286 l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
.|.+.. ....+.+|.++.+++|=+-.+.|.-+|
T Consensus 409 -ap~rsE-------R~aKyNqLlrIeeelg~~a~~~g~~~~ 441 (452)
T 3otr_A 409 -SPCRSE-------RLCKYNQLMRIEESLGADCVYAGESFR 441 (452)
T ss_dssp -CSCSHH-------HHHHHHHHHHHHHHHGGGEEECGGGTT
T ss_pred -CCcchh-------HHHHHHHHHHHHHHhCccceecccccC
Confidence 121111 123477888888899988888875544
No 158
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=77.24 E-value=4.4 Score=34.99 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-EEEc--CC----CHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGL--GE----SDDDLKEA 268 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-ivGl--gE----t~e~~~~~ 268 (328)
++.++.++++|++.+-+.......+. ..+.++.-+.-+.+.+ .|+.+.+.- .++. .+ ..+.+.+.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~~~~~~------~~~~~~~~~~~~~l~~--~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (286)
T 3dx5_A 18 TDIVQFAYENGFEGIELWGTHAQNLY------MQEYETTERELNCLKD--KTLEITMISDYLDISLSADFEKTIEKCEQL 89 (286)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHHH------HHCHHHHHHHHHHTGG--GTCCEEEEECCCCCSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEccccccccc------ccCHHHHHHHHHHHHH--cCCeEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 67888888888888876321111111 1233444455555667 788755421 1111 11 23456677
Q ss_pred HHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 269 MADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 269 l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
++.+.++|+..+.++....|........-....+.+.++.+++.+.|++..
T Consensus 90 i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 140 (286)
T 3dx5_A 90 AILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVL 140 (286)
T ss_dssp HHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 888888888887764222111000000000012335566667777787654
No 159
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=77.20 E-value=9.7 Score=31.40 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe
Q 020304 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 170 ~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (328)
.++++.+++.++++.+-+..-.....+..++.++++|.+.+.+..+.. .+...+.++.+++ .|+.
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~-------------~~~~~~~~~~~~~--~g~~ 105 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD-------------VLTIQSCIRAAKE--AGKQ 105 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC-------------HHHHHHHHHHHHH--HTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC-------------hhHHHHHHHHHHH--cCCe
Confidence 467888888766666533211111123449999999999998754321 1333445555556 5654
Q ss_pred EEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 250 TKSSIMLGL--GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 250 v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+ ++.+ .+|. .+.++.+.+.|++.+.+
T Consensus 106 ~----~v~~~~~~t~---~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 106 V----VVDMICVDDL---PARVRLLEEAGADMLAV 133 (211)
T ss_dssp E----EEECTTCSSH---HHHHHHHHHHTCCEEEE
T ss_pred E----EEEecCCCCH---HHHHHHHHHcCCCEEEE
Confidence 3 2222 2232 23345555666666554
No 160
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=77.07 E-value=8.1 Score=34.13 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCc--EEEEEeCCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~--~i~~~t~~~~~~-~e~l~~L~~aG~~ 208 (328)
+++.+.+.++.+.+.|++.+.|.....- + .+..+.++++.+++..|++ .+++ .++.-+- ...+.. .++|++
T Consensus 154 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-~---~P~~~~~lv~~l~~~~~~~~i~~H~-Hn~~Gla~An~laA-~~aGa~ 227 (298)
T 2cw6_A 154 SPAKVAEVTKKFYSMGCYEISLGDTIGV-G---TPGIMKDMLSAVMQEVPLAALAVHC-HDTYGQALANTLMA-LQMGVS 227 (298)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTSC-C---CHHHHHHHHHHHHHHSCGGGEEEEE-BCTTSCHHHHHHHH-HHTTCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCC-c---CHHHHHHHHHHHHHhCCCCeEEEEE-CCCCchHHHHHHHH-HHhCCC
Confidence 4677889999999999999988643321 2 2689999999999987764 4444 2332222 333444 478999
Q ss_pred EEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 209 ~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+...+..+-+ -+...+......++.+..++ . .|+.+ |-..+.+.++.+++.+
T Consensus 228 ~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~---~--~g~~~--------~idl~~l~~~~~~~~~ 281 (298)
T 2cw6_A 228 VVDSSVAGLGGCPYAQGASGNLATEDLVYMLE---G--LGIHT--------GVNLQKLLEAGNFICQ 281 (298)
T ss_dssp EEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHH---H--HTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEeecccccCCCCCCCCcCChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 88664432211 00000111345566666654 2 34431 3345666666666654
No 161
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=77.01 E-value=27 Score=32.07 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCC--------CC----------------CCcHHHHHHHHHHHHHhCCCcEEEEE
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDD--------IP----------------DGGSGHFARTVKAMKKQKPDIMVECL 188 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~--------l~----------------~~~~~~l~~li~~ik~~~~~~~i~~~ 188 (328)
.+...+.++.+++.|++-+-++.-.+.. +. .-..+.+..|.++.++. ++.+ +
T Consensus 43 le~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~--Gi~~--~ 118 (385)
T 1vli_A 43 LDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK--QVIF--L 118 (385)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT--TCEE--E
T ss_pred HHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHc--CCcE--E
Confidence 4556788889999999988886543322 11 01235666666666655 6655 3
Q ss_pred eCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 189 TSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 189 t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.. .|.+.++.|.+.|++.+.++
T Consensus 119 stp--fD~~svd~l~~~~vd~~KIg 141 (385)
T 1vli_A 119 STV--CDEGSADLLQSTSPSAFKIA 141 (385)
T ss_dssp CBC--CSHHHHHHHHTTCCSCEEEC
T ss_pred Ecc--CCHHHHHHHHhcCCCEEEEC
Confidence 433 48999999999999999883
No 162
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=77.00 E-value=20 Score=32.37 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=50.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCC-CCCCC----cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRD-DIPDG----GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~-~l~~~----~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+..+.++.+.+.|+..+.+.++... .+... ......++++.+++..+++.+.. ++.+.+.+.+..+.+ |+|.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVia--nGgI~s~eda~~~l~-GaD~ 221 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVT--NGGIRSLEEALFHLK-RVDG 221 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEE--ESSCCSHHHHHHHHT-TSSE
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEE--ECCcCCHHHHHHHHh-CCCE
Confidence 4577888899999999999875421 01100 00113467888888766777644 566668777777777 9999
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+.++
T Consensus 222 V~iG 225 (350)
T 3b0p_A 222 VMLG 225 (350)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9874
No 163
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=76.69 E-value=31 Score=28.55 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++++..+.++.+.+.|++-+-++- .+ ..-.+.++.+++ +++.+...+ .++.+.++...++|.+.+.
T Consensus 23 ~~~~~~~~~~~l~~gGv~~iel~~------k~---~~~~~~i~~~~~--~~~~~gag~---vl~~d~~~~A~~~GAd~v~ 88 (207)
T 2yw3_A 23 GGEDLLGLARVLEEEGVGALEITL------RT---EKGLEALKALRK--SGLLLGAGT---VRSPKEAEAALEAGAAFLV 88 (207)
T ss_dssp SCCCHHHHHHHHHHTTCCEEEEEC------SS---THHHHHHHHHTT--SSCEEEEES---CCSHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC------CC---hHHHHHHHHHhC--CCCEEEeCe---EeeHHHHHHHHHcCCCEEE
Confidence 567788999999999999877752 11 233577777777 576665433 3588999999999999875
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+ ..+ .+.++.+++ .|+. ++.|. .|.++... ..+.|+|.+.+|
T Consensus 89 ~~--------------~~d----~~v~~~~~~--~g~~----~i~G~-~t~~e~~~----A~~~Gad~v~~f 131 (207)
T 2yw3_A 89 SP--------------GLL----EEVAALAQA--RGVP----YLPGV-LTPTEVER----ALALGLSALKFF 131 (207)
T ss_dssp ES--------------SCC----HHHHHHHHH--HTCC----EEEEE-CSHHHHHH----HHHTTCCEEEET
T ss_pred cC--------------CCC----HHHHHHHHH--hCCC----EEecC-CCHHHHHH----HHHCCCCEEEEe
Confidence 32 112 234444555 5654 45663 56666543 345799988884
No 164
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=76.53 E-value=22 Score=30.97 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCc---------------HHHHHHHHHHHHHhCCCcEEEEEe--CC-CC-C
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---------------SGHFARTVKAMKKQKPDIMVECLT--SD-FR-G 194 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~---------------~~~l~~li~~ik~~~~~~~i~~~t--~~-~~-~ 194 (328)
+...+.++.+.+.|++-+-+.---.+.+.|+. .+.+.++++.+++.++++.+..++ |. +. .
T Consensus 32 ~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 32 ELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 55688899999999997766421111133432 135678888898764455555433 21 00 1
Q ss_pred CHHHHHHHHHcCCcEEee
Q 020304 195 DLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~ 212 (328)
.+..++.++++|++.+.+
T Consensus 112 ~e~f~~~~~~aGvdgvii 129 (267)
T 3vnd_A 112 IDEFYTKAQAAGVDSVLI 129 (267)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 367899999999999876
No 165
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=76.30 E-value=3 Score=37.47 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEec-cCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSV-DRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
+.+.+.+.++++.+.|+.-|-+.|. ..|... ..+.+++..+++.|++.. ++.+++-| ...++++.-.++|
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-~vpiSIDT----~~~~Va~aAl~aG 105 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-DVLISIDT----WKSQVAEAALAAG 105 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEC----SCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CceEEEeC----CCHHHHHHHHHcC
Confidence 4567788899999999997777542 112111 124577888888888763 66666533 2567777777777
Q ss_pred CcEEe
Q 020304 207 LDVFA 211 (328)
Q Consensus 207 ~~~i~ 211 (328)
.+-++
T Consensus 106 a~iIN 110 (314)
T 2vef_A 106 ADLVN 110 (314)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 76665
No 166
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=76.10 E-value=51 Score=31.04 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=82.1
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
..+.++.+.+.|++.+.+.+... . .+.+.+.++.+++..|++.+. .+...+.+.+..+.++|++.+.++..
T Consensus 234 ~~~~a~~l~~~G~d~ivi~~a~g--~----~~~~~~~i~~l~~~~p~~pvi---~G~v~t~~~a~~~~~~Gad~I~vg~g 304 (491)
T 1zfj_A 234 TFERAEALFEAGADAIVIDTAHG--H----SAGVLRKIAEIRAHFPNRTLI---AGNIATAEGARALYDAGVDVVKVGIG 304 (491)
T ss_dssp HHHHHHHHHHHTCSEEEECCSCT--T----CHHHHHHHHHHHHHCSSSCEE---EEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHHcCCCeEEEeeecC--c----chhHHHHHHHHHHHCCCCcEe---CCCccCHHHHHHHHHcCCCEEEECcc
Confidence 36778888889999988865321 1 356778899999887666654 22335789999999999999987631
Q ss_pred h----HHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 216 T----VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 216 t----~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
. ..+...... ..+.+-..+....+.+ .++++ |..= -.+.+|+.+.+ .+|++.+.+...
T Consensus 305 ~g~~~~tr~~~~~~--~p~~~~l~~~~~~~~~--~~ipv----ia~GGi~~~~di~kal----~~GA~~v~vG~~ 367 (491)
T 1zfj_A 305 PGSICTTRVVAGVG--VPQVTAIYDAAAVARE--YGKTI----IADGGIKYSGDIVKAL----AAGGNAVMLGSM 367 (491)
T ss_dssp CCTTBCHHHHTCCC--CCHHHHHHHHHHHHHH--TTCEE----EEESCCCSHHHHHHHH----HTTCSEEEESTT
T ss_pred CCcceEEeeecCCC--CCcHHHHHHHHHHHhh--cCCCE----EeeCCCCCHHHHHHHH----HcCCcceeeCHH
Confidence 1 122222111 2345555555555556 66653 4322 35777776655 469998887543
No 167
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=76.09 E-value=0.8 Score=39.22 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCC-CCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~-~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
..+..+.++.+.+.|++.+.++.-+.. ... ....++++.++ . .++.+.+ .++..+.+.++.+.++|++.+.
T Consensus 29 ~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~----~~~~~~i~~i~-~-~~ipvi~--~Ggi~~~~~~~~~~~~Gad~V~ 100 (241)
T 1qo2_A 29 EKDPVELVEKLIEEGFTLIHVVDLSNAIENS----GENLPVLEKLS-E-FAEHIQI--GGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_dssp SSCHHHHHHHHHHTTCCCEEEEEHHHHHHCC----CTTHHHHHHGG-G-GGGGEEE--ESSCCSHHHHHHHHHTTCCEEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEecccccccCC----chhHHHHHHHH-h-cCCcEEE--ECCCCCHHHHHHHHHCCCCEEE
Confidence 467788999999999999988752210 011 11245566666 4 2455543 4555688999999999999998
Q ss_pred echhh
Q 020304 212 HNIET 216 (328)
Q Consensus 212 ~~~et 216 (328)
++-..
T Consensus 101 lg~~~ 105 (241)
T 1qo2_A 101 VSSKV 105 (241)
T ss_dssp ECHHH
T ss_pred ECchH
Confidence 87543
No 168
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=75.87 E-value=16 Score=33.70 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=93.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC-----CHHHHHHHHHcCCcE
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-----DLRAVETLVHSGLDV 209 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~-----~~e~l~~L~~aG~~~ 209 (328)
+..+.++.+.+.|+++|+-.=-.+..-...-.+.+.++++..++. ++.+.+-.+...+ +.+.+..|++.|++.
T Consensus 42 ~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~g 119 (385)
T 1x7f_A 42 KDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDN--NMEVILDVAPAVFDQLGISYSDLSFFAELGADG 119 (385)
T ss_dssp HHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHT--TCEEEEEECTTCC------CCCTHHHHHHTCSE
T ss_pred HHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCE
Confidence 445677788889998774322111111111147888999988887 5666543333322 336778999999999
Q ss_pred Eeec----hhhHHHHH-h-----hhcCCCCCHHHHHHHHHHHHHhCCC---CeEEEeEEEEc--CCCHHHHHHHHHHHHh
Q 020304 210 FAHN----IETVKRLQ-R-----IVRDPRAGYEQSLEVLKHAKLSKKG---LITKSSIMLGL--GESDDDLKEAMADLRS 274 (328)
Q Consensus 210 i~~~----~et~~~~~-~-----~~~~~~~~~~~~l~~i~~~~~~~~G---i~v~~~~ivGl--gEt~e~~~~~l~~l~~ 274 (328)
+.++ .+....|. + +.-.-. +..+.++.+ .+..+. +..+-++--=- |-+.+.+.+.-+++++
T Consensus 120 LRLD~Gf~~~eia~ls~n~~glkIeLNAS-t~~~~l~~l---~~~~~n~~~l~acHNFYPr~~TGLs~~~f~~~n~~~k~ 195 (385)
T 1x7f_A 120 IRLDVGFDGLTEAKMTNNPYGLKIELNVS-NDIAYLENI---LSHQANKSALIGCHNFYPQKFTGLPYDYFIRCSERFKK 195 (385)
T ss_dssp EEESSCCSSHHHHHHTTCTTCCEEEEETT-SCSSHHHHH---TTSSCCGGGEEEECCCBCSTTCSBCHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHhcCCCCCEEEEeCc-CCHHHHHHH---HHcCCChHHeEEeeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 9872 22222232 2 000001 222333333 331123 22333343211 6689999999999999
Q ss_pred CCCCEEeeecccC----CCCCC--c---ccCCCCCHHHHHHHHHHHHhcC-Cceeeecc
Q 020304 275 IDVDILTLGQYLQ----PTPLH--L---TVKEYVTPEKFDFWKAYGESIG-FRYVASGP 323 (328)
Q Consensus 275 l~~~~i~i~~~l~----PTp~~--~---~~~~~~~~~~~~~l~~~~~~~G-~~~~~~g~ 323 (328)
+|+....|-+--. |-|++ + .....+++ +.+.+.+... | +-.|.+|.
T Consensus 196 ~Gi~t~AFI~g~~~~rGPwpl~eGLPTLE~HR~~~~--~~~a~~L~~~-g~iD~ViIGd 251 (385)
T 1x7f_A 196 HGIRSAAFITSHVANIGPWDINDGLCTLEEHRNLPI--EVQAKHLWAT-GLIDDVIIGN 251 (385)
T ss_dssp TTCCCEEEECCSSCCBCSSSCCSCCBSBGGGTTSCH--HHHHHHHHHT-TSCCEEEECS
T ss_pred CCCcEEEEecCCccccCCccccCCCCchHHHCCCCH--HHHHHHHHhc-CCCCEEEECC
Confidence 9987654421100 11121 0 11223333 3444444444 7 88888884
No 169
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=75.67 E-value=26 Score=32.39 Aligned_cols=130 Identities=24% Similarity=0.223 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et 216 (328)
.+.++.+.+.|++.|.|..... . .+.+.++++.+++.+ ++.+..- + ..+.+.++.+.++|+|.+.++.+.
T Consensus 146 ~e~~~~lveaGvdvIvldta~G--~----~~~~~e~I~~ik~~~-~i~Vi~g-~--V~t~e~A~~a~~aGAD~I~vG~g~ 215 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHG--H----SLNIIRTLKEIKSKM-NIDVIVG-N--VVTEEATKELIENGADGIKVGIGP 215 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCC--S----BHHHHHHHHHHHTTC-CCEEEEE-E--ECSHHHHHHHHHTTCSEEEECC--
T ss_pred HHHHHHHHHcCCCEEEEeCCCC--C----cccHHHHHHHHHhcC-CCeEEEe-e--cCCHHHHHHHHHcCCCEEEEeCCC
Confidence 4678888899999888743322 2 267888999999875 5665431 1 137899999999999999886543
Q ss_pred HHH-HHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 217 VKR-LQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 217 ~~~-~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
... ..+...+.+ -++.-+.++.+.+++ .++++ |..=| .+.+|+.+.+ .+|++.+.+...+
T Consensus 216 Gs~~~tr~~~g~g~p~~~al~~v~~~~~~--~~IPV----IA~GGI~~~~di~kal----alGAd~V~vGt~f 278 (400)
T 3ffs_A 216 GSICTTRIVAGVGVPQITAIEKCSSVASK--FGIPI----IADGGIRYSGDIGKAL----AVGASSVMIGSIL 278 (400)
T ss_dssp -------CCSCBCCCHHHHHHHHHHHHTT--TTCCE----EEESCCCSHHHHHHHH----TTTCSEEEECGGG
T ss_pred CcCcccccccccchhHHHHHHHHHHHHHh--cCCCE----EecCCCCCHHHHHHHH----HcCCCEEEEChHH
Confidence 221 112111011 123333444444444 56663 22112 3567765544 4799988876544
No 170
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=75.66 E-value=13 Score=31.26 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=48.4
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++....+.++.+.+.|++.+.+.-.+.+..+. ...-.+.++.+++... .+.+..+.++ ..+.++.+.++|++.+
T Consensus 21 d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~--~~~~~~~i~~l~~~~~~~~~v~l~vnd---~~~~v~~~~~~Gad~v 95 (230)
T 1rpx_A 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN--ITIGPLVVDSLRPITDLPLDVHLMIVE---PDQRVPDFIKAGADIV 95 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC--BCCCHHHHHHHGGGCCSCEEEEEESSS---HHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCcccc--cccCHHHHHHHHhccCCcEEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 34567788888999999876664222111111 1112467777777641 2444444443 3468899999999999
Q ss_pred eechh
Q 020304 211 AHNIE 215 (328)
Q Consensus 211 ~~~~e 215 (328)
.++.+
T Consensus 96 ~vh~~ 100 (230)
T 1rpx_A 96 SVHCE 100 (230)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 87643
No 171
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=75.61 E-value=27 Score=29.16 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=59.1
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
...+.++.+.+.|+..+.+++.+++....+ . -.+.++.+++.. ++.+.+ +++..+.+.+..+.++|++.+.++-
T Consensus 155 ~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~-~--~~~~i~~l~~~~-~~pvia--~GGi~~~~~~~~~~~~Ga~~v~vgs 228 (253)
T 1h5y_A 155 DAVKWAKEVEELGAGEILLTSIDRDGTGLG-Y--DVELIRRVADSV-RIPVIA--SGGAGRVEHFYEAAAAGADAVLAAS 228 (253)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTTCSC-C--CHHHHHHHHHHC-SSCEEE--ESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHHhCCCCEEEEecccCCCCcCc-C--CHHHHHHHHHhc-CCCEEE--eCCCCCHHHHHHHHHcCCcHHHHHH
Confidence 456778888889999998876554222111 1 134556666653 555543 4555466777778899999998862
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
.+++ ...+.++.++. +++ .|+.+
T Consensus 229 ----al~~----~~~~~~~~~~~---l~~--~g~~~ 251 (253)
T 1h5y_A 229 ----LFHF----RVLSIAQVKRY---LKE--RGVEV 251 (253)
T ss_dssp ----HHHT----TSSCHHHHHHH---HHH--TTCBC
T ss_pred ----HHHc----CCCCHHHHHHH---HHH--cCCCC
Confidence 2333 13455554444 456 77754
No 172
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=75.47 E-value=7 Score=34.51 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+- .++ ++.+.+.++.++. .+.+++ +++ ++++.+..+++.|+|.+++|.
T Consensus 208 l~ea~eAl~aGaD~I~LD-----n~~---~~~l~~av~~~~~---~v~iea--SGG-It~~~i~~~a~tGVD~IsvGa 271 (287)
T 3tqv_A 208 LDELNQAIAAKADIVMLD-----NFS---GEDIDIAVSIARG---KVALEV--SGN-IDRNSIVAIAKTGVDFISVGA 271 (287)
T ss_dssp HHHHHHHHHTTCSEEEEE-----SCC---HHHHHHHHHHHTT---TCEEEE--ESS-CCTTTHHHHHTTTCSEEECSH
T ss_pred HHHHHHHHHcCCCEEEEc-----CCC---HHHHHHHHHhhcC---CceEEE--ECC-CCHHHHHHHHHcCCCEEEECh
Confidence 477888888999988873 133 4778877777653 466664 344 388999999999999999864
No 173
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=75.15 E-value=15 Score=30.25 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe--CCC------CCCHHHHHHHHHcCCcEE
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDF------RGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t--~~~------~~~~e~l~~L~~aG~~~i 210 (328)
.++.+.+.|++.|++.+... +....+++.+ .++.+.+.| .++ -+++|..+.|.+.|+.-+
T Consensus 35 a~era~e~~Ik~iVVAS~sG--------~TA~k~~e~~----~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~ 102 (201)
T 1vp8_A 35 AVERAKELGIKHLVVASSYG--------DTAMKALEMA----EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIV 102 (201)
T ss_dssp HHHHHHHHTCCEEEEECSSS--------HHHHHHHHHC----TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCEEEEEeCCC--------hHHHHHHHHh----cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEE
Confidence 44456678999999965432 2233334433 356766544 221 248999999999998877
Q ss_pred e--echhhHHH-HHhhhcCCCCC-HHHHHHHHH
Q 020304 211 A--HNIETVKR-LQRIVRDPRAG-YEQSLEVLK 239 (328)
Q Consensus 211 ~--~~~et~~~-~~~~~~~~~~~-~~~~l~~i~ 239 (328)
. |-+..+++ +.+... +.. .+-+.++++
T Consensus 103 t~tH~lsgveR~is~kfG--G~~p~eiiA~tLR 133 (201)
T 1vp8_A 103 RQSHILSGLERSISRKLG--GVSRTEAIAEALR 133 (201)
T ss_dssp ECCCTTTTTHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred EEeccccchhHHHHHhcC--CCCHHHHHHHHHH
Confidence 6 44444555 555543 333 344456666
No 174
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=75.14 E-value=10 Score=33.49 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=72.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEE-eCCCCCC-HHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECL-TSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~---~~i~~~-t~~~~~~-~e~l~~L~~aG 206 (328)
+++.+.+.++.+.+.|+..|.|.....- . .+..+.++++.+++..|+ +.+.+- .++.-+- ...+.. .++|
T Consensus 148 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA-~~aG 222 (293)
T 3ewb_X 148 DRAFLIEAVQTAIDAGATVINIPDTVGY-T---NPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAA-IENG 222 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSSSC-C---CHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHH-HHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCC-C---CHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHH-HHhC
Confidence 4566788999999999999988643321 1 268999999999998875 334432 2332222 334444 4689
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
++.+-.++..+- ... .....++.+-.++.-.+. .|+.+ |-..+.+.++.+++.++
T Consensus 223 a~~vd~sv~GlG---era--GN~~~E~vv~~L~~~~~~-~g~~t--------gidl~~L~~~s~~v~~~ 277 (293)
T 3ewb_X 223 ARRVEGTINGIG---ERA--GNTALEEVAVALHIRKDF-YQAET--------NIVLNQFKNSSDLISRL 277 (293)
T ss_dssp CCEEEEBGGGCC---TTT--CBCBHHHHHHHHHHTHHH-HCEEE--------CCCGGGHHHHHHHHHHC
T ss_pred CCEEEeeccccc---ccc--ccHhHHHHHHHHHhhhhh-cCCCC--------CCCHHHHHHHHHHHHHH
Confidence 998876543321 111 234567776666532110 23321 23345566666666553
No 175
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=75.03 E-value=12 Score=32.70 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=51.8
Q ss_pred EeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC--CCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 252 SSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP--TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 252 ~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P--Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
..+|.|. .++.+...++++.+++.|.+.+-++ +..| |+..+ .....+.+..+++.+.++|+.+...
T Consensus 39 ~~vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~-~~kprts~~~f---~g~g~~gl~~l~~~~~~~Gl~~~te 108 (276)
T 1vs1_A 39 KAVIAGPCSVESWEQVREAALAVKEAGAHMLRGG-AFKPRTSPYSF---QGLGLEGLKLLRRAGDEAGLPVVTE 108 (276)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHHTCSEEECB-SSCCCSSTTSC---CCCTHHHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEeE-EEeCCCChhhh---cCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 4578888 7899999999999999999998884 4456 34322 2234788999999999999988764
No 176
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=75.00 E-value=15 Score=31.08 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=56.1
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc---CCcEEe
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS---GLDVFA 211 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a---G~~~i~ 211 (328)
...+.++.+.+.|+..+.+++.+++.... ..-.++++.+++.. ++.+.+ .+++.+.+.+..+.++ |++.+.
T Consensus 147 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~---g~~~~~~~~i~~~~-~ipvia--~GGI~~~~d~~~~~~~~~~Gadgv~ 220 (244)
T 1vzw_A 147 DLYETLDRLNKEGCARYVVTDIAKDGTLQ---GPNLELLKNVCAAT-DRPVVA--SGGVSSLDDLRAIAGLVPAGVEGAI 220 (244)
T ss_dssp BHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTC-SSCEEE--ESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEeccCcccccC---CCCHHHHHHHHHhc-CCCEEE--ECCCCCHHHHHHHHhhccCCCceee
Confidence 55677888888999999998765432111 11245666676653 555543 5565567999999999 999988
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHH
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVL 238 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i 238 (328)
++- .++. ...++++.++.+
T Consensus 221 vG~----al~~----~~~~~~~~~~~~ 239 (244)
T 1vzw_A 221 VGK----ALYA----KAFTLEEALEAT 239 (244)
T ss_dssp ECH----HHHT----TSSCHHHHHHHH
T ss_pred eeH----HHHc----CCCCHHHHHHHh
Confidence 862 2332 134566665554
No 177
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=74.86 E-value=37 Score=30.27 Aligned_cols=85 Identities=13% Similarity=0.038 Sum_probs=67.5
Q ss_pred CHHHHHHHHHcCCcEEeechhhHH-H-H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVK-R-L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMAD 271 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~-~-~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~ 271 (328)
|.-..+.+.++|++.+.++--++. . + +.-. ...+.++.+..++.+.+.-+.+++.+++=.|+| +.+++.+++..
T Consensus 48 D~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~--~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg-~~~~v~~tv~~ 124 (318)
T 1zlp_A 48 DALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDF--GLLTTTEVVEATRRITAAAPNLCVVVDGDTGGG-GPLNVQRFIRE 124 (318)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSS--SCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCC--CCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCC-CHHHHHHHHHH
Confidence 778888999999999999764332 2 2 1211 246899999999988764447889999999988 89999999999
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|+.-+.+
T Consensus 125 l~~aGaagv~i 135 (318)
T 1zlp_A 125 LISAGAKGVFL 135 (318)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHcCCcEEEE
Confidence 99999998887
No 178
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=74.78 E-value=8.3 Score=34.85 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-Cc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~--l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~ 208 (328)
+.++..+.++.+.+.|+..+.++.|.... ... ......++++.+++.. ++.+. .++.+.+.+.++.+.+.| +|
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-~~~~~~~~~~~ik~~~-~iPVi--~~GgI~s~e~a~~~L~~G~aD 302 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNV-YPGYQVPFAELIRREA-DIPTG--AVGLITSGWQAEEILQNGRAD 302 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHT-TCCEE--EESSCCCHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCC-CccccHHHHHHHHHHc-CCcEE--eeCCCCCHHHHHHHHHCCCee
Confidence 45677899999999999999997543111 110 1233466788888874 55553 345555888888888888 99
Q ss_pred EEeec
Q 020304 209 VFAHN 213 (328)
Q Consensus 209 ~i~~~ 213 (328)
.+.++
T Consensus 303 ~V~iG 307 (340)
T 3gr7_A 303 LVFLG 307 (340)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99885
No 179
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=74.78 E-value=7.3 Score=34.58 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.|.+-. +. ++.+.+.++.+ .+.+.+++ +++ ++++.+..+++.|+|.+.++-
T Consensus 219 lde~~eAl~aGaD~I~LDn-----~~---~~~l~~av~~i---~~~v~iea--SGG-I~~~~i~~~a~tGVD~isvG~ 282 (298)
T 3gnn_A 219 LDQLRTALAHGARSVLLDN-----FT---LDMMRDAVRVT---EGRAVLEV--SGG-VNFDTVRAIAETGVDRISIGA 282 (298)
T ss_dssp HHHHHHHHHTTCEEEEEES-----CC---HHHHHHHHHHH---TTSEEEEE--ESS-CSTTTHHHHHHTTCSEEECGG
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHh---CCCCeEEE--EcC-CCHHHHHHHHHcCCCEEEECC
Confidence 4677778888998777732 22 47777777766 34566654 444 389999999999999998764
No 180
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=74.50 E-value=25 Score=35.20 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i 210 (328)
+++.+.+.++++.+.|+..|.|.....- + .+..+.++++.+++..|++.+.+.+ ++.-+--...-.-.++|++.+
T Consensus 259 ~~e~~~~~a~~l~~~Ga~~I~l~DT~G~-~---~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~V 334 (718)
T 3bg3_A 259 SLQYYMGLAEELVRAGTHILCIKDMAGL-L---KPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVV 334 (718)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECTTSC-C---CHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCC-c---CHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEE
Confidence 3455688899999999999998643321 1 2588999999999987665554433 322222333333447899998
Q ss_pred ee
Q 020304 211 AH 212 (328)
Q Consensus 211 ~~ 212 (328)
-.
T Consensus 335 D~ 336 (718)
T 3bg3_A 335 DV 336 (718)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 181
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=74.12 E-value=33 Score=30.94 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCcEEeechhhH-HHHH-hhhc-CCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHH
Q 020304 197 RAVETLVHSGLDVFAHNIETV-KRLQ-RIVR-DPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMAD 271 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et~-~~~~-~~~~-~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~ 271 (328)
+.++.+.++|+|.+.++.-.- .... +... .--.+.+...+.++.+++. .++++..-+=+|. ..+.++..+.++.
T Consensus 74 ~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~-v~~PV~vKiR~g~~~~~~~~~~~~~a~~ 152 (350)
T 3b0p_A 74 EAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA-VRVPVTVKMRLGLEGKETYRGLAQSVEA 152 (350)
T ss_dssp HHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH-CSSCEEEEEESCBTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH-hCCceEEEEecCcCccccHHHHHHHHHH
Confidence 566777888999998865321 1111 1110 0012567777788877763 3777655444566 3466788889999
Q ss_pred HHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 272 LRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 272 l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
+.+.|++.+.+.....-..+.-.......+..++.++++.... ++..+..|
T Consensus 153 l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianG 204 (350)
T 3b0p_A 153 MAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNG 204 (350)
T ss_dssp HHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEES
T ss_pred HHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEEC
Confidence 9999999998853211000000000011112345555555555 66776666
No 182
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=74.12 E-value=3 Score=36.53 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEec-cCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSV-DRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG 206 (328)
+.+...+.++++.+.|+.-+=+.|. ..|... ..+.+++..+++.|++ +++.+++-| ...++++.-.++|
T Consensus 28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~--~~v~iSIDT----~~~~Va~~al~aG 101 (270)
T 4hb7_A 28 NVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG--FDVKISVDT----FRSEVAEACLKLG 101 (270)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTT--SSSEEEEEC----SCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhc--CCCeEEEEC----CCHHHHHHHHHhc
Confidence 4456778888999999997776542 111111 1234567777777764 467776543 2567777777777
Q ss_pred CcEEe-e-----chhhHHHHHh----hh----c-CCCCC------HHHHHHHHHHHHHhCCCCe---EEEeEEEEcCCCH
Q 020304 207 LDVFA-H-----NIETVKRLQR----IV----R-DPRAG------YEQSLEVLKHAKLSKKGLI---TKSSIMLGLGESD 262 (328)
Q Consensus 207 ~~~i~-~-----~~et~~~~~~----~~----~-~~~~~------~~~~l~~i~~~~~~~~Gi~---v~~~~ivGlgEt~ 262 (328)
.+-++ + +.+.++-..+ .+ + .+.+. .+...+.++.+.+ .|+. +..+==+|||-|.
T Consensus 102 a~iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~--aGI~~~~IilDPGiGFgKt~ 179 (270)
T 4hb7_A 102 VDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKI--AGIPSNKIWLDPGIGFAKTR 179 (270)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHH--TTCCGGGEEEECCTTSSCCH
T ss_pred cceeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHH--cCCCCceEEEeCCCCccccc
Confidence 77665 2 1111111100 00 0 01111 2334555677788 9984 4444445678888
Q ss_pred HHHHHHHHHHHh
Q 020304 263 DDLKEAMADLRS 274 (328)
Q Consensus 263 e~~~~~l~~l~~ 274 (328)
++=.++++.+.+
T Consensus 180 ~~N~~ll~~l~~ 191 (270)
T 4hb7_A 180 NEEAEVMARLDE 191 (270)
T ss_dssp HHHHHHHTCHHH
T ss_pred ccHHHHHhhHHH
Confidence 886666555543
No 183
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=74.07 E-value=12 Score=31.72 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-c-CCC-------HHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-L-GES-------DDDLK 266 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-l-gEt-------~e~~~ 266 (328)
++.++.++++|++.+-+.... +.. ...+++. +.+.+ .|+.+.+....+ + ... .+.+.
T Consensus 21 ~~~l~~~~~~G~~~vEl~~~~---~~~------~~~~~~~---~~l~~--~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~ 86 (275)
T 3qc0_A 21 AEAVDICLKHGITAIAPWRDQ---VAA------IGLGEAG---RIVRA--NGLKLTGLCRGGFFPAPDASGREKAIDDNR 86 (275)
T ss_dssp HHHHHHHHHTTCCEEECBHHH---HHH------HCHHHHH---HHHHH--HTCEESCEEEEECCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecccc---ccc------cCHHHHH---HHHHH--cCCceEEeecCCCcCCCCHHHHHHHHHHHH
Confidence 678888888888887775421 111 1233333 33445 777644332222 2 111 25566
Q ss_pred HHHHHHHhCCCCEEeeecccCCCC-CCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 267 EAMADLRSIDVDILTLGQYLQPTP-LHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 267 ~~l~~l~~l~~~~i~i~~~l~PTp-~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.++.+.++|+..+.+..-..|.. ......-....+.+.++.+++.+.|++..
T Consensus 87 ~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 87 RAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 777777888888776642111210 00000000012335566666777777644
No 184
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=74.07 E-value=30 Score=29.53 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=74.3
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCC------CCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHc
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRD------DIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~------~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~a 205 (328)
..+.+.++++.+.|++.|.+---+.+ .+. ...+.++.+.+++.. .++.+.+ |+ ..++ ..++
T Consensus 43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~---~~~~~~~a~~l~~l~~~~~~~liI--nd---~~~l---A~~~ 111 (243)
T 3o63_A 43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQ---ARDELAACEILADAAHRYGALFAV--ND---RADI---ARAA 111 (243)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCC---HHHHHHHHHHHHHHHHHTTCEEEE--ES---CHHH---HHHH
T ss_pred chHHHHHHHHHHCCCCEEEEccCCCCccccccCCC---HHHHHHHHHHHHHHHHhhCCEEEE--eC---HHHH---HHHh
Confidence 45778888888999998888532210 022 245555555554321 2555533 43 2333 4566
Q ss_pred CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 206 G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
|.|.+.++.+.+ ... .++.+.. .+ .++|. -.|.+|..+ ..+.|+|.+.+++
T Consensus 112 gAdGVHLg~~dl------------~~~----~~r~~~~--~~------~~iG~S~ht~~Ea~~----A~~~GaDyI~vgp 163 (243)
T 3o63_A 112 GADVLHLGQRDL------------PVN----VARQILA--PD------TLIGRSTHDPDQVAA----AAAGDADYFCVGP 163 (243)
T ss_dssp TCSEEEECTTSS------------CHH----HHHHHSC--TT------CEEEEEECSHHHHHH----HHHSSCSEEEECC
T ss_pred CCCEEEecCCcC------------CHH----HHHHhhC--CC------CEEEEeCCCHHHHHH----HhhCCCCEEEEcC
Confidence 889888764322 111 1122212 33 35555 567776443 4458999999875
Q ss_pred ccCCCCCCcccCCCCCHHHHHHHHHHHHh--cCCceeeec
Q 020304 285 YLQPTPLHLTVKEYVTPEKFDFWKAYGES--IGFRYVASG 322 (328)
Q Consensus 285 ~l~PTp~~~~~~~~~~~~~~~~l~~~~~~--~G~~~~~~g 322 (328)
+. ||+... ...... ++.++++... ..+..++.|
T Consensus 164 vf-~T~tK~-~~~~~g---l~~l~~~~~~~~~~iPvvAiG 198 (243)
T 3o63_A 164 CW-PTPTKP-GRAAPG---LGLVRVAAELGGDDKPWFAIG 198 (243)
T ss_dssp SS-CCCC------CCC---HHHHHHHHTC---CCCEEEES
T ss_pred cc-CCCCCC-Ccchhh---HHHHHHHHHhccCCCCEEEec
Confidence 44 554321 111223 3444444433 356677665
No 185
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=73.73 E-value=37 Score=32.77 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=65.4
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH-cCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~-aG~~~i~~~ 213 (328)
...+.++++.+.|+.++.+++.+.+....+ .+ .++++.+++.. ++.+. .+++..+.+.+..+.+ .|++.+.++
T Consensus 453 ~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d--~~li~~l~~~~-~iPVI--asGGi~s~~d~~~~~~~~G~~gvivg 526 (555)
T 1jvn_A 453 GVWELTRACEALGAGEILLNCIDKDGSNSG-YD--LELIEHVKDAV-KIPVI--ASSGAGVPEHFEEAFLKTRADACLGA 526 (555)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTTCSC-CC--HHHHHHHHHHC-SSCEE--ECSCCCSHHHHHHHHHHSCCSEEEES
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCC-CC--HHHHHHHHHhC-CccEE--EECCCCCHHHHHHHHHhcCChHHHHH
Confidence 457889999999999999987544322211 11 46677777653 55654 3666668888888877 899998876
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
..++. +..++.+.++.+ ++ .|+.+.
T Consensus 527 ----~a~~~----~~~~~~e~~~~l---~~--~gi~~r 551 (555)
T 1jvn_A 527 ----GMFHR----GEFTVNDVKEYL---LE--HGLKVR 551 (555)
T ss_dssp ----HHHHT----TSCCHHHHHHHH---HH--TTCCCC
T ss_pred ----HHHHc----CCCCHHHHHHHH---HH--CCCccc
Confidence 23443 356788776654 56 777653
No 186
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=73.72 E-value=36 Score=32.75 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=81.1
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHH---HhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK---KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik---~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
..+.+.++++.+.|++.+.+---+ ... ..+.++++.++ +.+ ++.+. .++. ++...++|.+.+
T Consensus 25 ~~l~~~ve~al~~Gv~~vQlR~K~---~~~---~~~~~~a~~l~~l~~~~-~v~li--IND~------~dlA~~~gAdGV 89 (540)
T 3nl6_A 25 KTLYGQVEAGLQNGVTLVQIREKD---ADT---KFFIEEALQIKELCHAH-NVPLI--INDR------IDVAMAIGADGI 89 (540)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCSS---SCT---THHHHHHHHHHHHHHHT-TCCEE--ECSC------SHHHHHTTCSEE
T ss_pred chHHHHHHHHHHCCCCEEEEecCC---CCH---HHHHHHHHHHHHHHHhc-CCEEE--EeCc------HHHHHHcCCCEE
Confidence 457888999999999988885222 222 34444554443 332 45543 3542 234456788988
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCC---CCEEeeeccc
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID---VDILTLGQYL 286 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~---~~~i~i~~~l 286 (328)
.++.+-+ .. ..++.+.. ++ .++|. -.|.++.. ...+.| +|++.+.++.
T Consensus 90 HLgq~dl------------~~----~~ar~~lg--~~------~iiG~S~ht~eea~----~A~~~G~~~aDYv~~Gpvf 141 (540)
T 3nl6_A 90 HVGQDDM------------PI----PMIRKLVG--PD------MVIGWSVGFPEEVD----ELSKMGPDMVDYIGVGTLF 141 (540)
T ss_dssp EECTTSS------------CH----HHHHHHHC--TT------SEEEEEECSHHHHH----HHHHTCC--CCEEEESCCS
T ss_pred EEChhhc------------CH----HHHHHHhC--CC------CEEEEECCCHHHHH----HHHHcCCCCCCEEEEcCCC
Confidence 8865321 11 11222222 33 35666 56777754 355678 9999997654
Q ss_pred CCCCCCcccC-CCCCHHHHHHHHHHHHh---cCCceeeec
Q 020304 287 QPTPLHLTVK-EYVTPEKFDFWKAYGES---IGFRYVASG 322 (328)
Q Consensus 287 ~PTp~~~~~~-~~~~~~~~~~l~~~~~~---~G~~~~~~g 322 (328)
||+...... +.+.++.+.++++...+ ..+..++.|
T Consensus 142 -~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIG 180 (540)
T 3nl6_A 142 -PTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIG 180 (540)
T ss_dssp -CCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEES
T ss_pred -CCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEc
Confidence 665431111 23345555555554433 378888886
No 187
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=73.71 E-value=29 Score=30.51 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=81.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHH-hCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 133 PMEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKK-QKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~-~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
.+.+..+++.+.+.+..-|.-.+ +.. .+. .+.+.+..+++.+.+ ...++.+.+ ..|.-.+.+.+....++|++++
T Consensus 31 ~e~~~avi~AAee~~sPvIlq~s~~~~-~~~-~g~~~~~~~v~~~A~~~~~~VPVal-HlDHg~~~e~i~~ai~~GFtSV 107 (288)
T 3q94_A 31 LEWTQAILAAAEEEKSPVILGVSEGAA-RHM-TGFKTVVAMVKALIEEMNITVPVAI-HLDHGSSFEKCKEAIDAGFTSV 107 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHH-HHT-SCHHHHHHHHHHHHHHTTCCSCEEE-EEEEECSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhhh-hhc-CCHHHHHHHHHHHHHhcCCCCcEEE-ECCCCCCHHHHHHHHHcCCCeE
Confidence 34556777777777766443332 221 121 124667788877766 124566643 3343347888889999999998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CC---------CHHHHHHHHHHHHhCCCCE
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GE---------SDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gE---------t~e~~~~~l~~l~~l~~~~ 279 (328)
-++...++ + ..+.+...+.++.+++ .|+.|-+- +|. |+ ...+-.+..+|+++.|+|.
T Consensus 108 MiDgS~~p-~-------eeNi~~Tk~vv~~ah~--~gvsVEaE--lG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~ 175 (288)
T 3q94_A 108 MIDASHHP-F-------EENVETTKKVVEYAHA--RNVSVEAE--LGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDC 175 (288)
T ss_dssp EECCTTSC-H-------HHHHHHHHHHHHHHHT--TTCEEEEE--ESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSE
T ss_pred EEeCCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEE--eeeeccccCCcCCccccCCCHHHHHHHHHHHCCCE
Confidence 87432211 1 0123445577888888 88866543 333 22 1223457778899999998
Q ss_pred Eee
Q 020304 280 LTL 282 (328)
Q Consensus 280 i~i 282 (328)
+.+
T Consensus 176 LAv 178 (288)
T 3q94_A 176 LAP 178 (288)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 188
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=73.64 E-value=11 Score=33.10 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=70.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeC-CCCCC-HHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-DFRGD-LRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~-~~~~~-~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++.+++.|++.|+|.--+++.- -+.+...++++..+. +.+.+... +...| .+.++.|.+.|+++|.-+=
T Consensus 114 ~~dI~~~~~~GAdGvVfG~L~~dg~--iD~~~~~~Li~~a~~----l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG 187 (287)
T 3iwp_A 114 KADIRLAKLYGADGLVFGALTEDGH--IDKELCMSLMAICRP----LPVTFHRAFDMVHDPMAALETLLTLGFERVLTSG 187 (287)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSC--BCHHHHHHHHHHHTT----SCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHcCCCEEEEeeeCCCCC--cCHHHHHHHHHHcCC----CcEEEECchhccCCHHHHHHHHHHcCCCEEECCC
Confidence 5677888999999999853222211 135777777776543 44433222 22224 5789999999999998632
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
. ..+..+-++.++.+.+... .+. +|.|=|=+.+.+.+.+ ...|++.++++
T Consensus 188 ~------------~~~a~~Gl~~Lk~Lv~~a~~rI~----ImaGGGV~~~Ni~~l~---~~tG~~~~H~S 238 (287)
T 3iwp_A 188 C------------DSSALEGLPLIKRLIEQAKGRIV----VMPGGGITDRNLQRIL---EGSGATEFHCS 238 (287)
T ss_dssp T------------SSSTTTTHHHHHHHHHHHTTSSE----EEECTTCCTTTHHHHH---HHHCCSEEEEC
T ss_pred C------------CCChHHhHHHHHHHHHHhCCCCE----EEECCCcCHHHHHHHH---HhhCCCEEeEC
Confidence 1 0111222333333322112 233 6777677777665543 34788888774
No 189
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=73.57 E-value=32 Score=30.53 Aligned_cols=169 Identities=13% Similarity=0.091 Sum_probs=96.3
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+.+..+++.+.+.+..-|.-.+...-.|. +.+.+..+++.+.+ .++.+.+ ..|.-.+.+.+..-.++|++++-+
T Consensus 27 ~e~~~Ail~AAee~~sPvIlq~s~g~~~y~--g~~~~~~~v~~~a~--~~VPVal-HlDHg~~~e~~~~ai~~GFtSVMi 101 (305)
T 1rvg_A 27 MEFLQAVLEAAEEQRSPVILALSEGAMKYG--GRALTLMAVELAKE--ARVPVAV-HLDHGSSYESVLRALRAGFTSVMI 101 (305)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHH--HHHHHHHHHHHHHH--CSSCEEE-EEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhC--CHHHHHHHHHHHHh--CCCcEEE-ECCCCCCHHHHHHHHHcCCCeeee
Confidence 355667777777777664433321111121 24677778887776 4666643 333334778888888999999887
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE-EEEcCCCH----------HHHHHHHHHHHhCCCCEEe
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSI-MLGLGESD----------DDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~-ivGlgEt~----------e~~~~~l~~l~~l~~~~i~ 281 (328)
+...++ + ..+.+...+.++.+++ .|+.|-+-+ .+|=.|.. .+-.+..+|+++.|+|.+.
T Consensus 102 DgS~~p-~-------eENi~~Tk~vv~~ah~--~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LA 171 (305)
T 1rvg_A 102 DKSHED-F-------ETNVRETRRVVEAAHA--VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLA 171 (305)
T ss_dssp CCTTSC-H-------HHHHHHHHHHHHHHHH--TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEE
T ss_pred CCCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEE
Confidence 532211 0 0123445677888888 888665433 12211211 2345778889999999877
Q ss_pred eecccCCCCCCc-c--cCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 282 LGQYLQPTPLHL-T--VKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 282 i~~~l~PTp~~~-~--~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
+. + -|--.. . ..+.+. ++.|+++.....+..|-=|
T Consensus 172 va-i--Gt~HG~Yk~~g~p~L~---~~~L~~I~~~~~vpLVlHG 209 (305)
T 1rvg_A 172 VA-I--GTSHGAYKGKGRPFID---HARLERIARLVPAPLVLHG 209 (305)
T ss_dssp EC-S--SCCSSSBCSSSSCCCC---HHHHHHHHHHCCSCEEECS
T ss_pred Ee-c--CccccccCCCCCCccC---HHHHHHHHHhcCCCEEEeC
Confidence 72 3 222111 1 123333 5666667677777666543
No 190
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=73.46 E-value=78 Score=33.55 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=82.2
Q ss_pred CCCCchHHHHHHHHHCC--CcEEEEEeccCCC-----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCC-----CC-----
Q 020304 131 PDPMEPENTAKAIASWG--VDYIVLTSVDRDD-----IPDGGSGHFARTVKAMKKQKPDIMVECLTSD-----FR----- 193 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G--~~~i~l~gg~~~~-----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~-----~~----- 193 (328)
.+.++..++++.+.+.| +..+-+.||...+ +...+ .+.++.+++..|+..+..+..+ ..
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p----~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~ 645 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDP----WERLALIREGAPNLLLQMLLRGANGVGYTNYPDN 645 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCH----HHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCH----HHHHHHHHHHchhhHHHHHhccccccccccCCch
Confidence 34456678888888885 5456654443210 11111 2344555555567666654321 11
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE--cC------CCHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG--LG------ESDDDL 265 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG--lg------Et~e~~ 265 (328)
..++.++...++|++.+.+-.. -.+.+....+++.+++ .|..+...+-+. ++ -+.+.+
T Consensus 646 ~~~~~i~~a~~~g~d~irif~s------------l~~~~~~~~~i~~~~~--~g~~v~~~i~~~~~~~d~~r~~~~~~~~ 711 (1165)
T 2qf7_A 646 VVKYFVRQAAKGGIDLFRVFDC------------LNWVENMRVSMDAIAE--ENKLCEAAICYTGDILNSARPKYDLKYY 711 (1165)
T ss_dssp HHHHHHHHHHHHTCCEEEEECT------------TCCGGGGHHHHHHHHH--TTCEEEEEEECCSCTTCTTSGGGCHHHH
T ss_pred hHHHHHHHHHhcCcCEEEEEee------------HHHHHHHHHHHHHHHh--ccceEEEEEEEeccccCCCCCCCCHHHH
Confidence 1246788999999998776321 1134566677888888 887766555443 11 367778
Q ss_pred HHHHHHHHhCCCCEEee
Q 020304 266 KEAMADLRSIDVDILTL 282 (328)
Q Consensus 266 ~~~l~~l~~l~~~~i~i 282 (328)
.+.++.+.++|++.+.+
T Consensus 712 ~~~~~~~~~~Ga~~i~l 728 (1165)
T 2qf7_A 712 TNLAVELEKAGAHIIAV 728 (1165)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88899999999998777
No 191
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=73.40 E-value=17 Score=33.55 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=51.6
Q ss_pred eEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC-C-CCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 253 SIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP-T-PLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 253 ~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-T-p~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
.+|+|. .++.+...++++.+++.|++.+-+..| .| | |.. ...+..+.+..+++++.+.|+.+.+.
T Consensus 144 ~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~f-kprts~~~---f~gl~~egl~~L~~~~~~~Gl~~~te 212 (385)
T 3nvt_A 144 VFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAF-KPRTSPYD---FQGLGLEGLKILKRVSDEYGLGVISE 212 (385)
T ss_dssp EEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSS-CCCSSTTS---CCCCTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccc-cCCCChHh---hcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 478888 689999999999999999999888545 46 3 332 23456788999999999999998765
No 192
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=73.32 E-value=46 Score=29.00 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=59.8
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE-cCCCHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG-LGESDDDLKEAMAD 271 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG-lgEt~e~~~~~l~~ 271 (328)
|.-.++.+.++|++.+..+.....-.. .-. ...+.++.+...+.+.+--....+.+++-+| + .+.++..++...
T Consensus 38 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt--~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY-~s~~~a~~~a~r 114 (275)
T 3vav_A 38 DASFAALLDRANVDVQLIGDSLGNVLQGQTTT--LPVTLDDIAYHTACVARAQPRALIVADLPFGTY-GTPADAFASAVK 114 (275)
T ss_dssp SHHHHHHHHHTTCSEEEECTTHHHHTTCCSSS--TTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSC-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECcHHHHHHcCCCCC--CccCHHHHHHHHHHHHhcCCCCCEEEecCCCCC-CCHHHHHHHHHH
Confidence 788889999999999977654433221 111 1368899998888876622235688888875 6 788888887776
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++.+.+
T Consensus 115 l~kaGa~aVkl 125 (275)
T 3vav_A 115 LMRAGAQMVKF 125 (275)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHcCCCEEEE
Confidence 66668887765
No 193
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=73.13 E-value=22 Score=34.28 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEE-eCCCCCCHHHHHHHHHcCCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECL-TSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~-t~~~~~~~e~l~~L~~aG~~~ 209 (328)
+++.+.+.++++.+.|++.|.|-....-.. +..+.++++.+++..| ++.+.+- .++.-+--...-.-.++|++.
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~----P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~ 248 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSIALKDMAALLK----PQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDV 248 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTCCCC----HHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCcC----HHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCE
Confidence 456678899999999999998854332112 5889999999998765 5444432 233222333333445789999
Q ss_pred Eee
Q 020304 210 FAH 212 (328)
Q Consensus 210 i~~ 212 (328)
+-.
T Consensus 249 VD~ 251 (539)
T 1rqb_A 249 VDT 251 (539)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 194
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=72.80 E-value=12 Score=31.98 Aligned_cols=42 Identities=17% Similarity=-0.010 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEee
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAH 212 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~~ 212 (328)
+.+.++.+++..-+ .++...+.. .+ +++.+.+.+.|+....+
T Consensus 25 ~~~~l~~~~~~G~~-~vEl~~~~~-~~~~~~~~~l~~~gl~~~~~ 67 (269)
T 3ngf_A 25 FLERFRLAAEAGFG-GVEFLFPYD-FDADVIARELKQHNLTQVLF 67 (269)
T ss_dssp HHHHHHHHHHTTCS-EEECSCCTT-SCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEecCCcc-CCHHHHHHHHHHcCCcEEEE
Confidence 55666666665211 233322222 23 45566677777665543
No 195
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=72.53 E-value=5 Score=35.79 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=74.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
.+++.+.+.++.+.+.|++.|.|..... +. .+..+.++++.+++..|++.+.+- .++.-+- ...+..+ ++|++
T Consensus 154 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G--~~--~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv-~aGa~ 228 (307)
T 1ydo_A 154 VPIEQVIRLSEALFEFGISELSLGDTIG--AA--NPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTAL-QMGIT 228 (307)
T ss_dssp CCHHHHHHHHHHHHHHTCSCEEEECSSC--CC--CHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHH-HHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCC--Cc--CHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHH-HhCCC
Confidence 3567788999999999999998863332 11 268999999999998776555432 2332222 3444444 78999
Q ss_pred EEeechhhHHH-HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 209 VFAHNIETVKR-LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 209 ~i~~~~et~~~-~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+...+..+-+ -+..-+......++.+..++ . .|+.+ |-..+.+.++.+++.+
T Consensus 229 ~vd~tv~GlGecp~a~graGN~~~E~lv~~L~---~--~g~~t--------~idl~~L~~~~~~v~~ 282 (307)
T 1ydo_A 229 VFDGSAGGLGGCPYAPGSSGNAATEDIVYMLE---Q--MDIKT--------NVKLEKLLSAAKWIEE 282 (307)
T ss_dssp EEEEBGGGCCEETTEEEEECBCBHHHHHHHHH---H--TTCBC--------CCCHHHHHHHHHHHHH
T ss_pred EEEEcccccCCCCCCCCCCCChhHHHHHHHHH---h--cCCCC--------CcCHHHHHHHHHHHHH
Confidence 98765533211 00000002345677666654 4 45542 3345666666666654
No 196
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=72.32 E-value=52 Score=29.18 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=84.2
Q ss_pred CchHHHHHHHHHCCCcEEEEEec-cCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHHHcCCc---
Q 020304 134 MEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLVHSGLD--- 208 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg-~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~~aG~~--- 208 (328)
+.+.+.+++..+.|++-|-+.+. ..|...+...+.-.++++.+++.. ++.+++ -|.+.-.+.++++.-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal~aga~~k~ 152 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIGEALSGRNC 152 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECCCCCCCCHHHHHHHHHhCCCCCC
Confidence 57788899989999998888653 323222233567777899988774 667765 331111257889888888876
Q ss_pred EEe-echhhHHHHHhh--------hcCCCCCHHHHHHHHHHHHHhCCCC---eEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 209 VFA-HNIETVKRLQRI--------VRDPRAGYEQSLEVLKHAKLSKKGL---ITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 209 ~i~-~~~et~~~~~~~--------~~~~~~~~~~~l~~i~~~~~~~~Gi---~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
-++ ++.+..+.+... +--...+.+...+.++.+.+ .|+ .+..+-.+|+ |-+.+.-...+..++.
T Consensus 153 iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~--~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 153 LLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIME--MNLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp EEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHT--TTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHH--CCCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 332 232222332211 11011156777788888888 999 3777777784 7555554445555554
No 197
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=72.25 E-value=22 Score=32.20 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=53.2
Q ss_pred EEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEeeecccCC--CCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 251 KSSIMLGL--GESDDDLKEAMADLRSIDVDILTLGQYLQP--TPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 251 ~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P--Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
...+|.|. .++.+...++++.+++.|.+.+-++ +..| ||..+ ..+..+.+..+++.+.+.|+.+.+.
T Consensus 106 ~~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q-~fKprTs~~~f---~glg~egl~~l~~~~~e~Gl~~~te 176 (350)
T 1vr6_A 106 YFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGG-AYKPRTSPYSF---QGLGEKGLEYLREAADKYGMYVVTE 176 (350)
T ss_dssp EEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECB-SCCCCCSTTSC---CCCTHHHHHHHHHHHHHHTCEEEEE
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeee-EEeCCCChHhh---cCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 36688898 7899999999999999999998884 4456 44332 2335788999999999999998764
No 198
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=71.95 E-value=44 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDL 265 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~ 265 (328)
.+....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++
T Consensus 71 ~~~~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleer 128 (244)
T 2v5b_A 71 ADALASLKDYGISWVVLGH----SERRLYY--GETNEIVAEKVAQACA--AGFH----VIVCVGETNEER 128 (244)
T ss_dssp HHHHHHHHHTTCCEEEECC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHH
T ss_pred CCCHHHHHHcCCCEEEeCc----hhhhhcc--CCCHHHHHHHHHHHHH--CCCe----EEEEcCCcHHHH
Confidence 3449999999999988753 2233333 5677888888999999 9997 466679998884
No 199
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=71.86 E-value=27 Score=30.74 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=92.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+.+...++.+.+.+..-|.-.+...-.|. +.+.+..+++.+.+.. ++.+.+ ..|.-.+.+.+....++|++++-++
T Consensus 29 e~~~avl~AAe~~~sPvIlq~s~~~~~y~--g~~~~~~~v~~~a~~~-~VPVal-HlDHg~~~e~i~~ai~~GFtSVMiD 104 (286)
T 1gvf_A 29 ETIQAILEVCSEMRSPVILAGTPGTFKHI--ALEEIYALCSAYSTTY-NMPLAL-HLDHHESLDDIRRKVHAGVRSAMID 104 (286)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECTTHHHHS--CHHHHHHHHHHHHHHT-TSCBEE-EEEEECCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhc--CHHHHHHHHHHHHHhC-CCcEEE-EcCCCCCHHHHHHHHHcCCCeEEEC
Confidence 44566677777666653332221111122 2577888888877653 455533 3333347889999999999998875
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--C-C-C---------HHHHHHHHHHHHhCCCCEE
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-E-S---------DDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--g-E-t---------~e~~~~~l~~l~~l~~~~i 280 (328)
...++ + ..+.+...+.++.+++ .|+.|-+- +|. | | . ..+-.+..+|+++.|+|.+
T Consensus 105 gS~lp-~-------eeNi~~Tk~vv~~ah~--~gvsVEaE--lG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~L 172 (286)
T 1gvf_A 105 GSHFP-F-------AENVKLVKSVVDFCHS--QDCSVEAE--LGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL 172 (286)
T ss_dssp CTTSC-H-------HHHHHHHHHHHHHHHH--TTCEEEEE--ESCCC-----------CCSSCCHHHHHHHHHHHCCSEE
T ss_pred CCCCC-H-------HHHHHHHHHHHHHHHH--cCCEEEEE--EeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEE
Confidence 32221 1 0123445677888888 88765543 333 2 1 0 0224567888999999987
Q ss_pred eeecccCCCCCC-cccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 281 TLGQYLQPTPLH-LTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 281 ~i~~~l~PTp~~-~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
.+. + -|--. ....+.+. ++.|+++....++..|-=
T Consensus 173 Ava-i--Gt~HG~Y~~~p~Ld---~~~L~~I~~~~~vpLVlH 208 (286)
T 1gvf_A 173 AVA-I--GTAHGLYSKTPKID---FQRLAEIREVVDVPLVLH 208 (286)
T ss_dssp EEC-S--SCCSSCCSSCCCCC---HHHHHHHHHHCCSCEEEC
T ss_pred Eee-c--CccccCcCCCCccC---HHHHHHHHHhcCCCEEEE
Confidence 772 3 22211 01123333 455555555566655543
No 200
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=71.67 E-value=58 Score=29.43 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=68.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCC--------CC---------------CCcHHHHHHHHHHHHHhCCCcEEEEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDD--------IP---------------DGGSGHFARTVKAMKKQKPDIMVECLT 189 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~--------l~---------------~~~~~~l~~li~~ik~~~~~~~i~~~t 189 (328)
.+...+.++.+++.|++-+-++.-.+.. +. .-+.+.+..+.++.++. ++.+. +
T Consensus 34 ~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~--Gi~~~--s 109 (349)
T 2wqp_A 34 LKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK--GMIFI--S 109 (349)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT--TCEEE--E
T ss_pred HHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh--CCeEE--E
Confidence 4556788889999999988887422111 11 01246666666666665 66663 3
Q ss_pred CCCCCCHHHHHHHHHcCCcEEeec------hhhHHHHHhhhc-----CCCCCHHHHHHHHHHHHHhCCCC
Q 020304 190 SDFRGDLRAVETLVHSGLDVFAHN------IETVKRLQRIVR-----DPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 190 ~~~~~~~e~l~~L~~aG~~~i~~~------~et~~~~~~~~~-----~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
.. .|.+.++.|.+.|++.+.++ ..-++.+-+.-+ -.-.+.+++..+++.+++ .|-
T Consensus 110 t~--~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~--~G~ 175 (349)
T 2wqp_A 110 TL--FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSVEIIRE--AGV 175 (349)
T ss_dssp EE--CSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHH--HTC
T ss_pred ee--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH--cCC
Confidence 22 48999999999999999882 222232211110 011489999999999988 665
No 201
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=71.23 E-value=16 Score=31.96 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l 272 (328)
.|.-..+.+.++|++.+.++-.++.... -..+ ...+.++.+..++.+.+. ..+++.+++=.|+|.+.+++.+++..+
T Consensus 24 ~D~~sA~~~~~aG~~ai~vsg~s~a~~~-G~pD~~~vt~~em~~~~~~I~~~-~~~pviaD~d~Gyg~~~~~~~~~v~~l 101 (275)
T 2ze3_A 24 WDVASARLLEAAGFTAIGTTSAGIAHAR-GRTDGQTLTRDEMGREVEAIVRA-VAIPVNADIEAGYGHAPEDVRRTVEHF 101 (275)
T ss_dssp SSHHHHHHHHHHTCSCEEECHHHHHHHS-CCCSSSSSCHHHHHHHHHHHHHH-CSSCEEEECTTCSSSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCEEEECcHHHHHhC-CCCCCCCCCHHHHHHHHHHHHhh-cCCCEEeecCCCCCCCHHHHHHHHHHH
Confidence 3778888899999999999743332221 1111 136899999999988653 457899999999999999999999999
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.+.|+.-+.+
T Consensus 102 ~~aGaagv~i 111 (275)
T 2ze3_A 102 AALGVAGVNL 111 (275)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCcEEEE
Confidence 9999998887
No 202
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=71.15 E-value=17 Score=31.96 Aligned_cols=84 Identities=7% Similarity=-0.067 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCc-EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 196 LRAVETLVHSGLD-VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 196 ~e~l~~L~~aG~~-~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
.+.++.+.++|+| .+.+|+.+-.. +..+.-+.+.+...+.++.+++. .++++..-+ ..+-+.+++.+.++.+.+
T Consensus 109 ~~~a~~~~~~g~d~~iein~~~P~~--~g~~~~g~~~e~~~~iv~~vr~~-~~~Pv~vKi--~~~~~~~~~~~~a~~~~~ 183 (311)
T 1jub_A 109 IAMLKKIQESDFSGITELNLSCPNV--PGEPQLAYDFEATEKLLKEVFTF-FTKPLGVKL--PPYFDLVHFDIMAEILNQ 183 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEESCCCCS--SSCCCGGGCHHHHHHHHHHHTTT-CCSCEEEEE--CCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEEeccCCCC--CCcccccCCHHHHHHHHHHHHHh-cCCCEEEEE--CCCCCHHHHHHHHHHHHH
Confidence 4677888889989 78776521110 10000123677888888888872 255543322 224477888888999999
Q ss_pred CCCCEEeeec
Q 020304 275 IDVDILTLGQ 284 (328)
Q Consensus 275 l~~~~i~i~~ 284 (328)
.|++.+.+.+
T Consensus 184 ~G~d~i~v~~ 193 (311)
T 1jub_A 184 FPLTYVNSVN 193 (311)
T ss_dssp SCCCEEEECC
T ss_pred cCCcEEEecC
Confidence 9999887754
No 203
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=71.06 E-value=13 Score=33.01 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH-cCCcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~-aG~~~i~~ 212 (328)
++..+.++.+.+.|+..+.+.|+.......+ ...+ ++++.+++ ++.+. .++.+.+.+.+..+.+ .|+|.+.+
T Consensus 140 ~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~-~~~~-~~i~~i~~---~ipVi--~~GgI~s~~da~~~l~~~gad~V~i 212 (318)
T 1vhn_A 140 NEVEEIYRILVEEGVDEVFIHTRTVVQSFTG-RAEW-KALSVLEK---RIPTF--VSGDIFTPEDAKRALEESGCDGLLV 212 (318)
T ss_dssp CCHHHHHHHHHHTTCCEEEEESSCTTTTTSS-CCCG-GGGGGSCC---SSCEE--EESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCccccCCC-CcCH-HHHHHHHc---CCeEE--EECCcCCHHHHHHHHHcCCCCEEEE
Confidence 3445788899999999999987653221111 1111 45555554 45553 3556557665555555 79999987
Q ss_pred c------hhhHHHHHhhh---cCCCCCHHHHHHHHHHHH
Q 020304 213 N------IETVKRLQRIV---RDPRAGYEQSLEVLKHAK 242 (328)
Q Consensus 213 ~------~et~~~~~~~~---~~~~~~~~~~l~~i~~~~ 242 (328)
+ ++.+.+....+ ..+..+.+++++.+..--
T Consensus 213 GR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 251 (318)
T 1vhn_A 213 ARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHL 251 (318)
T ss_dssp SGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHH
T ss_pred CHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 3 33444432211 112246677666665433
No 204
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=71.00 E-value=30 Score=31.31 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.7
Q ss_pred HHHHHHCCCcEEEEEeccCCCCCCC-----cHHHHHHHHHHHH-HhCC----CcEEEEEeCCCCCCHHHHHHHHHcCCcE
Q 020304 140 AKAIASWGVDYIVLTSVDRDDIPDG-----GSGHFARTVKAMK-KQKP----DIMVECLTSDFRGDLRAVETLVHSGLDV 209 (328)
Q Consensus 140 ~~~~~~~G~~~i~l~gg~~~~l~~~-----~~~~l~~li~~ik-~~~~----~~~i~~~t~~~~~~~e~l~~L~~aG~~~ 209 (328)
++...+.|+..|.+.......++.. -.+++.++++.++ +..| ++.+..+..+ +...++.|+++|++.
T Consensus 203 ~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G---~~~~l~~l~~~g~d~ 279 (367)
T 1r3s_A 203 LVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKD---GHFALEELAQAGYEV 279 (367)
T ss_dssp HHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETT---CGGGHHHHTTSSCSE
T ss_pred HHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCC---cHHHHHHHHhcCCCE
Confidence 3344568998776643222223321 1367778888888 6522 3444444433 356889999999998
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+.+.
T Consensus 280 i~~d 283 (367)
T 1r3s_A 280 VGLD 283 (367)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8763
No 205
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=70.24 E-value=25 Score=29.74 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhCCCCEEee
Q 020304 263 DDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+.+.++.+.++|+..+.+
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~ 103 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKV 103 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 44445555555555554444
No 206
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=69.86 E-value=43 Score=27.18 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+.++..+.++.+.+.|+.-+.++...+ ...+.++.+++..| +..+.+.+ ..+.+.++...++|.|.+
T Consensus 20 ~~~~~~~~~~~~~~~G~~~iev~~~~~---------~~~~~i~~ir~~~~~~~~ig~~~---v~~~~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 20 SVEEAKEKALAVFEGGVHLIEITFTVP---------DADTVIKELSFLKEKGAIIGAGT---VTSVEQCRKAVESGAEFI 87 (205)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHTHHHHHTTCEEEEES---CCSHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCcEEEecc---cCCHHHHHHHHHcCCCEE
Confidence 456677888889999999887753321 22455777776644 55554322 237788899999999998
Q ss_pred eechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 211 AHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
++.. .. -+.++.+++ .|+.+. .|. .|.+++ ....++|++.+.++
T Consensus 88 -v~~~-------------~~----~~~~~~~~~--~g~~vi----~g~-~t~~e~----~~a~~~Gad~vk~~ 131 (205)
T 1wa3_A 88 -VSPH-------------LD----EEISQFCKE--KGVFYM----PGV-MTPTEL----VKAMKLGHTILKLF 131 (205)
T ss_dssp -ECSS-------------CC----HHHHHHHHH--HTCEEE----CEE-CSHHHH----HHHHHTTCCEEEET
T ss_pred -EcCC-------------CC----HHHHHHHHH--cCCcEE----CCc-CCHHHH----HHHHHcCCCEEEEc
Confidence 5421 11 134555666 677643 243 344443 34456777776653
No 207
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=69.67 E-value=56 Score=28.38 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=73.6
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-ch
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~ 214 (328)
+.+-++.+.+.|++.+.+ ++++ .+...++.+.++++ ++....+.+... +++.++.+.+.+-+.++. +.
T Consensus 114 ~~~f~~~~~~aGvdGvIi-----pDlp---~ee~~~~~~~~~~~--gl~~I~lvap~t-~~eri~~i~~~~~gfiY~vs~ 182 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLI-----ADVP---TNESQPFVAAAEKF--GIQPIFIAPPTA-SDETLRAVAQLGKGYTYLLSR 182 (271)
T ss_dssp HHHHHHHHHHHTCCEEEE-----TTSC---GGGCHHHHHHHHHT--TCEEEEEECTTC-CHHHHHHHHHHCCSCEEECCC
T ss_pred HHHHHHHHHHCCCCEEEE-----CCCC---HHHHHHHHHHHHHc--CCeEEEEECCCC-CHHHHHHHHHHCCCeEEEEec
Confidence 356788888999998877 3455 35677778888877 555433333332 678998888887666554 32
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEeeec
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
-...-... .. ..+..+.++.+++ .. ..-+++|+|= |.+++.+. ...++|-+-+..
T Consensus 183 ~GvTG~~~-----~~-~~~~~~~v~~vr~--~~---~~Pv~vGfGIst~e~~~~~----~~~gADgvIVGS 238 (271)
T 3nav_A 183 AGVTGAET-----KA-NMPVHALLERLQQ--FD---APPALLGFGISEPAQVKQA----IEAGAAGAISGS 238 (271)
T ss_dssp C-------------C-CHHHHHHHHHHHH--TT---CCCEEECSSCCSHHHHHHH----HHTTCSEEEESH
T ss_pred cCCCCccc-----CC-chhHHHHHHHHHH--hc---CCCEEEECCCCCHHHHHHH----HHcCCCEEEECH
Confidence 11111111 11 2456677777777 32 2346889965 67776533 346788776654
No 208
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=69.49 E-value=23 Score=28.96 Aligned_cols=142 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+..+.++.+.+.|++.+.+. .++...+.+.++++.+++......+.++.+ +.++.+.++|++.+.++
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~------~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~------~~~~~a~~~gad~v~l~- 93 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMR------IKNAPTREMYEIGKTLRQLTREYDALFFVD------DRVDVALAVDADGVQLG- 93 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEEC------CCSCCHHHHHHHHHHHHHHHHHTTCEEEEE------SCHHHHHHHTCSEEEEC-
T ss_pred hHHHHHHHHHHCCCCEEEEC------CCCCCHHHHHHHHHHHHHHHHHcCCeEEEc------ChHHHHHHcCCCEEEEC-
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCc
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHL 293 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~ 293 (328)
..+.. .+.+++ .. .++++|+ -.|.++ +..+.+.|++.+.+.+.. ||...
T Consensus 94 -------------~~~~~-----~~~~~~--~~----~~~~~~v~~~t~~e----~~~~~~~g~d~i~~~~~~-~~~~~- 143 (215)
T 1xi3_A 94 -------------PEDMP-----IEVAKE--IA----PNLIIGASVYSLEE----ALEAEKKGADYLGAGSVF-PTKTK- 143 (215)
T ss_dssp -------------TTSCC-----HHHHHH--HC----TTSEEEEEESSHHH----HHHHHHHTCSEEEEECSS-CC----
T ss_pred -------------CccCC-----HHHHHH--hC----CCCEEEEecCCHHH----HHHHHhcCCCEEEEcCCc-cCCCC-
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 294 TVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.. ..+..++.++++.....+..+..|
T Consensus 144 --~~-~~~~~~~~l~~l~~~~~~pvia~G 169 (215)
T 1xi3_A 144 --ED-ARVIGLEGLRKIVESVKIPVVAIG 169 (215)
T ss_dssp ---C-CCCCHHHHHHHHHHHCSSCEEEES
T ss_pred --CC-CCCcCHHHHHHHHHhCCCCEEEEC
No 209
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=69.22 E-value=54 Score=30.90 Aligned_cols=76 Identities=20% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i 210 (328)
+++.+.+.++++.+.|++.|.|-....-.. +..+.++++.+++.. ++.+.+-+ ++.-+--...-.-.++|++.+
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~----P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~V 230 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDMAGILT----PYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRV 230 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTSCCC----HHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCCCcC----HHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 456778999999999999999854332112 588999999999875 44444322 322222333334447899988
Q ss_pred ee
Q 020304 211 AH 212 (328)
Q Consensus 211 ~~ 212 (328)
-.
T Consensus 231 D~ 232 (464)
T 2nx9_A 231 DT 232 (464)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 210
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=69.02 E-value=46 Score=29.54 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=79.9
Q ss_pred CCchHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.+..+++.+.+.+..-|.-.+ +.. .|. +.+.+..+++.+.+.+.++.+.+ ..|.-.+.+.+..-.++|++++-
T Consensus 27 ~e~~~avi~AAee~~sPvIlq~s~g~~-~y~--g~~~~~~~v~~aa~~~~~VPVal-HLDHg~~~e~~~~ai~~GFtSVM 102 (307)
T 3n9r_A 27 FEMLNAIFEAGNEENSPLFIQASEGAI-KYM--GIDMAVGMVKIMCERYPHIPVAL-HLDHGTTFESCEKAVKAGFTSVM 102 (307)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEHHHH-HHH--CHHHHHHHHHHHHHHSTTSCEEE-EEEEECSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhhh-hhC--CHHHHHHHHHHHHHhcCCCcEEE-ECCCCCCHHHHHHHHHhCCCcEE
Confidence 34556677777777655443222 221 121 24677777877766544666643 33333477888888899999988
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCH------------HHHHHHHHHHHhCCCC
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESD------------DDLKEAMADLRSIDVD 278 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~------------e~~~~~l~~l~~l~~~ 278 (328)
++...++ + ..+.+...+.++.+++ .|+.|-+- +|. |-.+ -+-.+..+|+++.|+|
T Consensus 103 iDgS~~p-~-------eeNi~~Tk~vv~~ah~--~gvsVEaE--LG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD 170 (307)
T 3n9r_A 103 IDASHHA-F-------EENLELTSKVVKMAHN--AGVSVEAE--LGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170 (307)
T ss_dssp ECCTTSC-H-------HHHHHHHHHHHHHHHH--TTCEEEEE--ESCCCCC----------CCSCCHHHHHHHHHHHCCS
T ss_pred EECCCCC-H-------HHHHHHHHHHHHHHHH--cCCeEEEE--eeeeccccCCcccccccccCCCHHHHHHHHHHHCCC
Confidence 7432221 1 0123445678888888 88876543 333 2111 1345677888899999
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 171 ~LAv 174 (307)
T 3n9r_A 171 YLAP 174 (307)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8777
No 211
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=69.01 E-value=28 Score=33.20 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+..+.++.+.+.|+..+.+.+... . .+...++++.+++..|++.+.... ..+.+.++.+.++|+|.+.++.
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G--~----~~~~~~~i~~i~~~~~~~pvi~~~---v~t~~~a~~l~~aGad~I~vg~ 325 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQG--N----SVYQIAMVHYIKQKYPHLQVIGGN---VVTAAQAKNLIDAGVDGLRVGM 325 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCC--C----SHHHHHHHHHHHHHCTTCEEEEEE---ECSHHHHHHHHHHTCSEEEECS
T ss_pred hhHHHHHHHHHcCCCEEEeeccCC--c----chhHHHHHHHHHHhCCCCceEecc---cchHHHHHHHHHcCCCEEEECC
Confidence 456778888899999888844332 1 256778999999987777764311 1478999999999999997744
Q ss_pred hhHH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 215 ETVK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 215 et~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.... ...+...+.+......+..+..+++. .++++ |. |=-.+.+++.+.+. +|++.+.+...+
T Consensus 326 ~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~-~~ipV----ia~GGI~~~~di~kala----~GAd~V~iG~~~ 390 (514)
T 1jcn_A 326 GCGSICITQEVMACGRPQGTAVYKVAEYARR-FGVPI----IADGGIQTVGHVVKALA----LGASTVMMGSLL 390 (514)
T ss_dssp SCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG-GTCCE----EEESCCCSHHHHHHHHH----TTCSEEEESTTT
T ss_pred CCCcccccccccCCCccchhHHHHHHHHHhh-CCCCE----EEECCCCCHHHHHHHHH----cCCCeeeECHHH
Confidence 2110 00011110112233344555544441 35552 32 21235677666543 799998886543
No 212
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=68.83 E-value=15 Score=30.85 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHH
Q 020304 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKR 219 (328)
Q Consensus 140 ~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~ 219 (328)
+-...+.|+.+|.-.-|.-++..+.+.+.+.++.+.++....+..+.+ ..+. +...+.....+|+|.+++..+.+++
T Consensus 116 a~~Aa~AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ila--AS~R-~~~~v~~~a~~G~d~~Tip~~vl~~ 192 (212)
T 3r8r_A 116 ALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIA--ASIR-HPQHVTEAALRGAHIGTMPLKVIHA 192 (212)
T ss_dssp HHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEE--BSCC-SHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHcCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEE--ecCC-CHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 334555677777443233233444456788888888888754555543 3333 7788888889999999999988887
Q ss_pred HH
Q 020304 220 LQ 221 (328)
Q Consensus 220 ~~ 221 (328)
+.
T Consensus 193 l~ 194 (212)
T 3r8r_A 193 LT 194 (212)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 213
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=68.80 E-value=13 Score=33.39 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=52.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCC-C-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-CcE
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRD-D-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDV 209 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~-~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~ 209 (328)
.++..+.++.+.+.|+..+.+.++... . .+. ......++++.+++.. ++.+. .++.+.+.+.++.+.+.| +|.
T Consensus 228 ~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~-~~~~~~~~~~~ir~~~-~iPVi--~~Ggi~s~~~a~~~l~~G~aD~ 303 (338)
T 1z41_A 228 IADHIGFAKWMKEQGVDLIDCSSGALVHADINV-FPGYQVSFAEKIREQA-DMATG--AVGMITDGSMAEEILQNGRADL 303 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHH-CCEEE--ECSSCCSHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCCCC-CccchHHHHHHHHHHC-CCCEE--EECCCCCHHHHHHHHHcCCceE
Confidence 446678888999999999999876421 0 111 1123456677787764 45553 456655888888888888 999
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+.++
T Consensus 304 V~iG 307 (338)
T 1z41_A 304 IFIG 307 (338)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9884
No 214
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=68.73 E-value=64 Score=28.73 Aligned_cols=135 Identities=16% Similarity=0.075 Sum_probs=73.7
Q ss_pred HHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE--Ee------CCC-------C-C-------
Q 020304 139 TAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LT------SDF-------R-G------- 194 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~--~t------~~~-------~-~------- 194 (328)
..+.+++.|++.+.+.- .+| .-...+.+++.++++.+++. |+.+.+ .. |+. . .
T Consensus 32 ~~~ilk~~G~n~vRlri~v~P-~~g~~d~~~~~~~~~~ak~~--Gl~v~ld~hysd~wadP~~q~~p~~W~~~~~~~~~~ 108 (334)
T 1fob_A 32 LETILADAGINSIRQRVWVNP-SDGSYDLDYNLELAKRVKAA--GMSLYLDLHLSDTWADPSDQTTPSGWSTTDLGTLKW 108 (334)
T ss_dssp HHHHHHHHTCCEEEEEECSCC-TTCTTCHHHHHHHHHHHHHT--TCEEEEEECCSSSCCBTTBCBCCTTSCSSCHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEEECC-CCCccCHHHHHHHHHHHHHC--CCEEEEEeccCCCCCCcccccCccccccCChHHHHH
Confidence 35566778999776631 121 11112368999999999998 555432 11 110 0 0
Q ss_pred -----CHHHHHHHHHcC--CcEEeechhhHHHHHhhhcCCC--CCHHHHHHHH----HHHHHhC--CCCeEEEeEEEEc-
Q 020304 195 -----DLRAVETLVHSG--LDVFAHNIETVKRLQRIVRDPR--AGYEQSLEVL----KHAKLSK--KGLITKSSIMLGL- 258 (328)
Q Consensus 195 -----~~e~l~~L~~aG--~~~i~~~~et~~~~~~~~~~~~--~~~~~~l~~i----~~~~~~~--~Gi~v~~~~ivGl- 258 (328)
+.++++.|++.| ++.+.++-|+..-+. -+++ ..++...+.+ +.+|+.. ++.. +++.+
T Consensus 109 ~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~l---wp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~----v~~h~~ 181 (334)
T 1fob_A 109 QLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLL---WPLGETSSYSNIGALLHSGAWGVKDSNLATTPK----IMIHLD 181 (334)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSS---BTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCE----EEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeecCccccc---CCCCcchhHHHHHHHHHHHHHHHHHhccCCCCe----EEEEcC
Confidence 236788889887 677888877542111 0111 1345544444 3456644 3333 45555
Q ss_pred -CCCHHHHHHHHHHHHhCC------CCEEeee
Q 020304 259 -GESDDDLKEAMADLRSID------VDILTLG 283 (328)
Q Consensus 259 -gEt~e~~~~~l~~l~~l~------~~~i~i~ 283 (328)
+...+.+...++.+.+.| +|.+.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~g~~~~~~~DvIG~s 213 (334)
T 1fob_A 182 DGWSWDQQNYFYETVLATGELLSTDFDYFGVS 213 (334)
T ss_dssp CTTCHHHHHHHHHHHHHTSSSCGGGCCEEEEE
T ss_pred CcCchHHHHHHHHHHHHcCCCCCCCcCEEEEe
Confidence 444444444445555544 6889885
No 215
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=68.61 E-value=60 Score=30.91 Aligned_cols=125 Identities=10% Similarity=0.159 Sum_probs=73.4
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC------CCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK------PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~------~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
.+.+.++.+.+.++..+.+...+.. +. +.-...++++.+..-. ..+.+.+......-+.+.++.|.++|++
T Consensus 194 ~l~eal~~m~~~~i~~lpVVDe~g~-l~--GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd 270 (511)
T 3usb_A 194 TLSEAEKILQKYKIEKLPLVDNNGV-LQ--GLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVD 270 (511)
T ss_dssp CHHHHHHHHHHHTCSEEEEECTTSB-EE--EEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCC-Ee--eeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccc
Confidence 4567777788888888877643221 11 1233455566554311 1122222111111136889999999999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.++.. ....+.+++.++.+++.++++.+. .|--.|.++ .+.+.+.|++.+.+
T Consensus 271 ~I~Id~a------------~g~~~~v~~~i~~i~~~~~~~~vi----~g~v~t~e~----a~~~~~aGad~i~v 324 (511)
T 3usb_A 271 AIVLDTA------------HGHSQGVIDKVKEVRAKYPSLNII----AGNVATAEA----TKALIEAGANVVKV 324 (511)
T ss_dssp EEEEECS------------CTTSHHHHHHHHHHHHHCTTSEEE----EEEECSHHH----HHHHHHHTCSEEEE
T ss_pred eEEeccc------------ccchhhhhhHHHHHHHhCCCceEE----eeeeccHHH----HHHHHHhCCCEEEE
Confidence 9988632 113467788888888866676643 333235544 55667789998876
No 216
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=68.38 E-value=16 Score=31.87 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
-...|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 104 Sa~MLkd~G~~~VIiGH----SERR~~f--gEtde~V~~K~~~Al~--~GL~----pIlCVGEtleeRe 160 (272)
T 4g1k_A 104 AAGMVAEFGAAYAIVGH----SERRAYH--GESNETVAAKARRALA--AGLT----PIVCVGETLAERE 160 (272)
T ss_dssp CHHHHHTTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhccccc--CCCHHHHHHHHHHHHH--CCCe----EEEEeCCCHHHHh
Confidence 46778999999988763 2233332 5677888888999999 9997 4666799998874
No 217
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=67.60 E-value=13 Score=33.37 Aligned_cols=100 Identities=9% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEEe-CCCCCCHHHHHHHHHcCC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECLT-SDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~---~~i~~~t-~~~~~~~e~l~~L~~aG~ 207 (328)
+++.+.+.++.+.+.|+..|.|.....- . .+..+.++++.+++..|+ +.+.+-. ++.-+--...-.-.++|+
T Consensus 149 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~--~--~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 224 (325)
T 3eeg_A 149 DQAFLARMVEAVIEAGADVVNIPDTTGY--M--LPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGA 224 (325)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECCBSSSC--C--CHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCccCC--c--CHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4556678888999999998888533321 1 258899999999998775 6665422 332222233333336899
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHHHHH
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~ 240 (328)
+.+-..+..+- ... .....++.+-.++.
T Consensus 225 ~~vd~tv~GlG---er~--GN~~lE~vv~~L~~ 252 (325)
T 3eeg_A 225 RQVECTINGIG---ERA--GNTALEEVVMAMEC 252 (325)
T ss_dssp CEEEEBGGGCC---STT--CCCBHHHHHHHHHH
T ss_pred CEEEEeccccc---ccc--cchhHHHHHHHHHh
Confidence 98876543321 111 23466777777654
No 218
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=67.51 E-value=19 Score=31.09 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHH-hCCCcEEEEEe----CCCCCC-HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHH
Q 020304 167 GHFARTVKAMKK-QKPDIMVECLT----SDFRGD-LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKH 240 (328)
Q Consensus 167 ~~l~~li~~ik~-~~~~~~i~~~t----~~~~~~-~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~ 240 (328)
.++..+.+.+++ ...++.+-+.. ..+.-| +=-...|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.
T Consensus 45 ~~L~~v~~~~~~~~~~~i~vgAQn~~~~~~GA~TGEiS~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~V~~Kv~~ 118 (254)
T 3m9y_A 45 IQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGH----SERRELF--HETDEEINKKAHA 118 (254)
T ss_dssp HHHHHHHHHHHTTSSTTCEEEESCCCSSSSBSCTTCCCHHHHHHTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcceEEecccccccCCCccCcCCHHHHHHcCCCEEEECc----ccccCcc--CCCHHHHHHHHHH
Confidence 566666665531 11346654311 011112 2346778999999988753 2333332 5677778888999
Q ss_pred HHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 241 AKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 241 ~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
+.+ .|+. .|+-.|||.+++.
T Consensus 119 Al~--~GL~----pIlCvGEtleere 138 (254)
T 3m9y_A 119 IFK--HGMT----PIICVGETDEERE 138 (254)
T ss_dssp HHH--TTCE----EEEEECCCHHHHH
T ss_pred HHH--CCCE----EEEEcCCcHHHHH
Confidence 999 9997 4666799988765
No 219
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=67.38 E-value=37 Score=28.36 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 140 AKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 140 ~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++.+... ++..+.+.+..+..-.........+.++.+++..+++.+.+ .+++ +.+.+..+.++|+|.+-++
T Consensus 129 ~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v--~GGI-~~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 129 VFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV--DGGL-GPSTIDVAASAGANCIVAG 201 (228)
T ss_dssp GHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE--ESSC-STTTHHHHHHHTCCEEEES
T ss_pred HHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEE--ECCc-CHHHHHHHHHcCCCEEEEC
Confidence 4455554 78888885443211111112345566777877655666654 3443 6788888999999999886
No 220
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=67.26 E-value=20 Score=30.89 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 79 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 135 (248)
T 1r2r_A 79 SPGMIKDCGATWVVLGH----SERRHVF--GESDELIGQKVAHALS--EGLG----VIACIGEKLDERE 135 (248)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECC----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46778999999988753 2333333 5677888889999999 9997 4666799988876
No 221
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=67.06 E-value=20 Score=31.05 Aligned_cols=57 Identities=30% Similarity=0.313 Sum_probs=42.4
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 80 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 136 (257)
T 2yc6_A 80 SVEMLQDMGLKHVIVGH----SERRRIM--GETDEQSAKKAKRALE--KGMT----VIFCVGETLDERK 136 (257)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678999999988753 2333333 5677888889999999 9997 4666799988744
No 222
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=67.05 E-value=20 Score=30.91 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=42.3
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 78 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGE~leere 134 (250)
T 1yya_A 78 SARMLSDLGCRYAIVGH----SERRRYH--GETDALVAEKAKRLLE--EGIT----PILCVGEPLEVRE 134 (250)
T ss_dssp CHHHHHHTTCSEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEeCc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678999999988753 2333333 5677888889999999 9997 4666799988654
No 223
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=66.95 E-value=20 Score=30.83 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=42.6
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 79 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 135 (248)
T 1o5x_A 79 SAEIAKDLNIEYVIIGH----FERRKYF--HETDEDVREKLQASLK--NNLK----AVVCFGESLEQRE 135 (248)
T ss_dssp CHHHHHHTTCCEEEECC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEeCC----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678999999988753 2233333 5677888889999999 9997 4666799998873
No 224
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=66.79 E-value=11 Score=31.69 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc---CCcEEe
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS---GLDVFA 211 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a---G~~~i~ 211 (328)
+..+.++.+.+.|+..+.+++.+.+....+ + -.++++.+++. .++.+.+ ++++.+.+.+..+.++ |++.+.
T Consensus 150 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~--~~~~~~~l~~~-~~ipvia--~GGI~~~~d~~~~~~~~~~Gad~v~ 223 (244)
T 2y88_A 150 DLWDVLERLDSEGCSRFVVTDITKDGTLGG-P--NLDLLAGVADR-TDAPVIA--SGGVSSLDDLRAIATLTHRGVEGAI 223 (244)
T ss_dssp EHHHHHHHHHHTTCCCEEEEETTTTTTTSC-C--CHHHHHHHHTT-CSSCEEE--ESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCccccCC-C--CHHHHHHHHHh-CCCCEEE--ECCCCCHHHHHHHHhhccCCCCEEE
Confidence 567888888899999999988664322111 1 24456666654 3555543 5566577888889998 999988
Q ss_pred ec
Q 020304 212 HN 213 (328)
Q Consensus 212 ~~ 213 (328)
++
T Consensus 224 vG 225 (244)
T 2y88_A 224 VG 225 (244)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 225
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=66.77 E-value=20 Score=31.26 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEe----CCCCCC-HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHH
Q 020304 167 GHFARTVKAMKKQKPDIMVECLT----SDFRGD-LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHA 241 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t----~~~~~~-~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~ 241 (328)
.++..+.+.++.....+.+-+.. ..+.-| +=-...|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+
T Consensus 48 ~~L~~v~~~~~~~~~~i~vgAQn~~~~~~GAfTGEIS~~mLkd~G~~~ViiGH----SERR~~f--~Etde~V~~Kv~~A 121 (267)
T 3ta6_A 48 TDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGH----SERRTYH--NEDDALVAAKAATA 121 (267)
T ss_dssp GGHHHHHHHHHHTTCSCEEEESCCCSSSSBSCTTCCCHHHHHHTTCCEEEESC----HHHHHHT--TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEecccCCCCCCCccCcccHHHHHHcCCCEEEEcc----hhhcccc--CCCHHHHHHHHHHH
Confidence 45555555555432235554311 001112 2346778999999988753 2233332 46777788889999
Q ss_pred HHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 242 KLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 242 ~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
.+ .|+. .|+-.|||.++++
T Consensus 122 l~--~GL~----pIlCvGEtleeRe 140 (267)
T 3ta6_A 122 LK--HGLT----PIVCIGEHLDVRE 140 (267)
T ss_dssp HH--TTCE----EEEEECCCHHHHH
T ss_pred HH--CCCe----EEEEeCCCHHHHh
Confidence 99 9997 4666799998864
No 226
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=66.66 E-value=15 Score=29.96 Aligned_cols=131 Identities=10% Similarity=0.082 Sum_probs=73.5
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcH----HHHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHHHHHHHHcCCcEEee
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGS----GHFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~----~~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
+.++++.+.| .+|..-+-..+.+..... +.+.+..+.|++.. +.....+. |.+..++..++.++++|...+.-
T Consensus 47 ~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~-G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w 124 (195)
T 2cc0_A 47 SLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAG-GGTPKLFRPPYGETNATLRSVEAKYGLTEVIW 124 (195)
T ss_dssp HHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTT-SCCCSEECCGGGCCCHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHCC-CEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHh-CCCCCEEECCCCCcCHHHHHHHHHCCCeEEEe
Confidence 5677777888 456554444433322112 23333334444432 33322233 33344788999999999887766
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc---CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL---GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl---gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
++++.+- + ..+.+++.+.++.++ +|- +++-+ ..|.+.+...+..+++-|...+.+...
T Consensus 125 ~~d~~Dw--~-----~~~~~~i~~~~~~~~---~g~-----IiL~Hd~~~~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 125 DVDSQDW--N-----NASTDAIVQAVSRLG---NGQ-----VILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp SEECCGG--G-----TCCHHHHHHHHHTCC---TTC-----EEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred ccCCCcc--C-----CCCHHHHHHHHhCcC---cCe-----EEEECCCchhHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 6555331 1 235666666654322 442 23323 246777888899999999887777544
No 227
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=66.65 E-value=18 Score=31.68 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
-...|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 104 S~~mLkd~G~~~VIiGH----SERR~~f--~Etde~V~~Kv~~Al~--~GL~----pIlCVGEtleeRe 160 (275)
T 3kxq_A 104 SAFMLKEAGASHVIIGH----SERRTVY--QESDAIVRAKVQAAWR--AGLV----ALICVGETLEERK 160 (275)
T ss_dssp CHHHHHHHTCSEEEESC----HHHHHHT--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEeCCCHHHHH
Confidence 46678899999988753 2233332 5677888888999999 9997 4666799998875
No 228
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=66.61 E-value=23 Score=34.13 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCe---EEEeEEEEcCCCHHHHHHHHHHHHhCCC
Q 020304 234 SLEVLKHAKLSKKGLI---TKSSIMLGLGESDDDLKEAMADLRSIDV 277 (328)
Q Consensus 234 ~l~~i~~~~~~~~Gi~---v~~~~ivGlgEt~e~~~~~l~~l~~l~~ 277 (328)
..+.++.+.+ .|+. +..+=-+|++-|.++-.++++.+.++.-
T Consensus 416 l~~~i~~a~~--~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~~ 460 (545)
T 2bmb_A 416 IGERYIKAID--NGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKN 460 (545)
T ss_dssp HHHHHHHHHH--TTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHH--cCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHHh
Confidence 3356777888 9995 6667667888888877777777766543
No 229
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=66.53 E-value=11 Score=32.00 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCcE
Q 020304 197 RAVETLVHSGLDV 209 (328)
Q Consensus 197 e~l~~L~~aG~~~ 209 (328)
++.+.++++|+.-
T Consensus 55 ~~~~~~~~~gl~~ 67 (272)
T 2q02_A 55 QVRNLAEKYGLEI 67 (272)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCeE
Confidence 4444555555544
No 230
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=66.49 E-value=19 Score=31.12 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=42.5
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 81 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pIlCvGEtleere 137 (255)
T 3qst_A 81 TVPMIKSFGIEWTILGH----SERRDIL--KEDDEFLAAKAKFALE--NGMK----IIYCCGEHLSERE 137 (255)
T ss_dssp CHHHHHTTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhhhhc--CCCHHHHHHHHHHHHH--CCCe----EEEEcCCcHHHHH
Confidence 46788999999988753 2333333 5677888888999999 9997 4666799988764
No 231
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=66.49 E-value=77 Score=28.84 Aligned_cols=146 Identities=12% Similarity=0.041 Sum_probs=86.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~L~~aG 206 (328)
+++++.+.++.+.+.|++.+-+--|. +.+.-.+.++++++.. +++.+.+-.|... +. +.++.|.+.|
T Consensus 151 ~~e~~~~~a~~~~~~G~~~iKiKvG~-------~~~~d~~~v~avR~a~g~d~~l~vDan~~~-~~~~A~~~~~~l~~~~ 222 (389)
T 3ozy_A 151 TPDQAADELAGWVEQGFTAAKLKVGR-------APRKDAANLRAMRQRVGADVEILVDANQSL-GRHDALAMLRILDEAG 222 (389)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS-------CHHHHHHHHHHHHHHHCTTSEEEEECTTCC-CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCEEeeccCC-------CHHHHHHHHHHHHHHcCCCceEEEECCCCc-CHHHHHHHHHHHHhcC
Confidence 46777888888889999988875332 1467778899998864 6777655444432 43 4567788888
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHH-HhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAK-LSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~-~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
+..+-= -+. ..++ +.++.++ + ..++++ -.+|+..+..+..+.++.-.++.+.+-
T Consensus 223 i~~iEq----------P~~--~~d~----~~~~~l~~~-~~~iPI------a~dE~i~~~~~~~~~i~~~~~d~v~ik-- 277 (389)
T 3ozy_A 223 CYWFEE----------PLS--IDDI----EGHRILRAQ-GTPVRI------ATGENLYTRNAFNDYIRNDAIDVLQAD-- 277 (389)
T ss_dssp CSEEES----------CSC--TTCH----HHHHHHHTT-CCSSEE------EECTTCCHHHHHHHHHHTTCCSEECCC--
T ss_pred CCEEEC----------CCC--cccH----HHHHHHHhc-CCCCCE------EeCCCCCCHHHHHHHHHcCCCCEEEeC--
Confidence 776631 011 1232 3344444 3 134432 235665566665566666667766552
Q ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 286 LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 286 l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
++.. .. ..+..++.++|++.|+..+
T Consensus 278 --~~~~-----GG--it~~~~ia~~A~~~gi~~~ 302 (389)
T 3ozy_A 278 --ASRA-----GG--ITEALAISASAASAHLAWN 302 (389)
T ss_dssp --TTTS-----SC--HHHHHHHHHHHHHTTCEEC
T ss_pred --cccc-----CC--HHHHHHHHHHHHHcCCEEE
Confidence 2221 11 3446667777888887765
No 232
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=66.42 E-value=21 Score=30.70 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDL 265 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~ 265 (328)
....|+++|++.+.+|- .-+|... +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++
T Consensus 78 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleer 133 (247)
T 1ney_A 78 SVDQIKDVGAKYVILGH----SERRSYF--HEDDKFIADKTKFALG--QGVG----VILCIGETLEEK 133 (247)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTT--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHH
T ss_pred CHHHHHHcCCCEEEECC----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHH
Confidence 46678999999988753 2333332 5677888889999999 9997 466679998877
No 233
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=66.40 E-value=20 Score=31.22 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 102 S~~mLkd~G~~~ViiGH----SERR~~f--~Etde~v~~Kv~~Al~--~GL~----pIlCVGEtleere 158 (271)
T 3krs_A 102 SCEMLKDMDVDCSLVGH----SERRQYY--SETDQIVNNKVKKGLE--NGLK----IVLCIGESLSERE 158 (271)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred cHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCe----EEEEeCCcHHHHH
Confidence 46678999999988753 2233333 5677888888999999 9997 4666799998765
No 234
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=66.38 E-value=21 Score=30.90 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 80 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 136 (255)
T 1b9b_A 80 SPLMLQEIGVEYVIVGH----SERRRIF--KEDDEFINRKVKAVLE--KGMT----PILCVGETLEERE 136 (255)
T ss_dssp CHHHHHTTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678999999988753 2333333 5677788888999999 9997 4666799998854
No 235
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=66.31 E-value=23 Score=30.16 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=43.2
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKE 267 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~ 267 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++..
T Consensus 73 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere~ 130 (233)
T 2jgq_A 73 TSKHLEELKIHTLLIGH----SERRTLL--KESPSFLKEKFDFFKS--KNFK----IVYCIGEELTTREK 130 (233)
T ss_dssp BHHHHHHTTCCEEEECC----HHHHHTT--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHHH
T ss_pred CHHHHHHcCCCEEEeCc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHhc
Confidence 46678999999988753 2333332 5677888889999999 9997 36657999988775
No 236
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=66.28 E-value=21 Score=30.77 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=42.3
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDL 265 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~ 265 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++
T Consensus 80 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleer 135 (251)
T 2vxn_A 80 SMPILKDIGVHWVILGH----SERRTYY--GETDEIVAQKVSEACK--QGFM----VIACIGETLQQR 135 (251)
T ss_dssp BHHHHHHTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHH
Confidence 46788999999988753 2233333 5677888889999999 9997 466679998887
No 237
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=66.21 E-value=52 Score=28.95 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHH--H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKR--L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMA 270 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~--~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~ 270 (328)
.|.-..+.+.++|++.+.++--.+.. + +.-. ...+.++.+..++.+.+. ..+++.+++=.|+|.+.+++.+++.
T Consensus 25 ~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~--~~vt~~em~~~~~~I~~~-~~~PviaD~d~Gyg~~~~~~~~~v~ 101 (295)
T 1xg4_A 25 INANHALLAQRAGYQAIYLSGGGVAAGSLGLPDL--GISTLDDVLTDIRRITDV-CSLPLLVDADIGFGSSAFNVARTVK 101 (295)
T ss_dssp SSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSS--SCSCHHHHHHHHHHHHHH-CCSCEEEECTTCSSSSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCC--CCCCHHHHHHHHHHHHhh-CCCCEEecCCcccCCCHHHHHHHHH
Confidence 37788889999999999986543322 2 1111 146899999999988653 4567888888898889999999999
Q ss_pred HHHhCCCCEEeee
Q 020304 271 DLRSIDVDILTLG 283 (328)
Q Consensus 271 ~l~~l~~~~i~i~ 283 (328)
.+.+.|+.-+.+-
T Consensus 102 ~l~~aGa~gv~iE 114 (295)
T 1xg4_A 102 SMIKAGAAGLHIE 114 (295)
T ss_dssp HHHHHTCSEEEEE
T ss_pred HHHHcCCeEEEEC
Confidence 9999999988883
No 238
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=66.18 E-value=70 Score=28.33 Aligned_cols=85 Identities=12% Similarity=-0.018 Sum_probs=64.0
Q ss_pred CHHHHHHHHHcCCcEEee-chhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEEcCCCHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAH-NIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKK-GLITKSSIMLGLGESDDDLKEAMA 270 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~-~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~-Gi~v~~~~ivGlgEt~e~~~~~l~ 270 (328)
|.-..+.+.++|++.+.+ +........ .-. ...+.++.+..++.+.+.-. .+++.+++=.|+|. .+++.++++
T Consensus 34 D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~--~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~-~~~v~~~v~ 110 (307)
T 3lye_A 34 DGLSARTAMELGFKSLYMTGAGTTASRLGQPDL--AIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGG-PIMVARTVE 110 (307)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSS--SCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSS-HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCC--CCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCC-HHHHHHHHH
Confidence 778888899999999998 343333221 211 13689999999988876212 47888888889874 788999999
Q ss_pred HHHhCCCCEEee
Q 020304 271 DLRSIDVDILTL 282 (328)
Q Consensus 271 ~l~~l~~~~i~i 282 (328)
.+.+.|+.-+.+
T Consensus 111 ~l~~aGaagv~i 122 (307)
T 3lye_A 111 HYIRSGVAGAHL 122 (307)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCeEEEE
Confidence 999999998887
No 239
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=66.10 E-value=21 Score=30.89 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 78 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pIvCvGEtleere 134 (259)
T 2i9e_A 78 SPAMIKDVGADWVILGH----SERRQIF--GESDELIAEKVCHALE--SGLK----VIACIGETLEERE 134 (259)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhhhhc--CCCHHHHHHHHHHHHH--CCCe----EEEEcCCcHHHHh
Confidence 46678999999988753 2333332 5678889999999999 9997 4666799988654
No 240
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=65.93 E-value=29 Score=29.53 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=48.8
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
...+.++.+.+.|+..+++++...+.... +.+ .++++.+++.. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 157 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~-g~~--~~~i~~l~~~~-~ipvia--~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 157 LLRDWVVEVEKRGAGEILLTSIDRDGTKS-GYD--TEMIRFVRPLT-TLPIIA--SGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTTCS-CCC--HHHHHHHGGGC-CSCEEE--ESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hHHHHHHHHHHcCCCEEEEEeecCCCCcC-CCC--HHHHHHHHHHc-CCCEEE--eCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34667788888999999998754322111 111 45677777653 555543 455557788888889999999885
No 241
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=65.68 E-value=22 Score=31.13 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|..- +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 98 S~~mLkd~G~~~ViiGH----SERR~~f--~Etde~V~~Kv~~Al~--~GL~----pI~CvGEtleeRe 154 (275)
T 1mo0_A 98 SPAMIKDLGLEWVILGH----SERRHVF--GESDALIAEKTVHALE--AGIK----VVFCIGEKLEERE 154 (275)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEeCc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46778999999988753 2333333 5677888889999999 9997 4666799988876
No 242
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}
Probab=65.47 E-value=19 Score=31.07 Aligned_cols=57 Identities=21% Similarity=0.131 Sum_probs=41.9
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+- +.+-+.+-+.++.+.+ .|+. .|+-.|||.++++
T Consensus 79 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 135 (249)
T 3th6_A 79 SPGMIKDCGGQWVILGH----SERRHVF--KEDDVLIGEKIKHALE--SGLN----VIACIGELLEDRE 135 (249)
T ss_dssp CHHHHHHTTCCEEEESC----HHHHHTS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHT
T ss_pred CHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46778999999988753 2333332 5677778888999999 9997 4666799988763
No 243
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=65.42 E-value=76 Score=33.03 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=93.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCC--C------CcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHHHH
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIP--D------GGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETLVH 204 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~--~------~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L~~ 204 (328)
++..+.++.+.+.|++.|.+.-+-+.... . .+.+.+.++++.+++.. ++.+.+ .+++..-..+.++.+.+
T Consensus 648 ~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~-~~Pv~vK~~~~~~~~~~~a~~~~~ 726 (1025)
T 1gte_A 648 NDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAKE 726 (1025)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhh-CCceEEEeCCChHHHHHHHHHHHH
Confidence 44566677777789998888654332111 0 13578899999999873 333332 24433212688999999
Q ss_pred cCCcEEeec--------hhh--H-HH-H--H-----hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHH
Q 020304 205 SGLDVFAHN--------IET--V-KR-L--Q-----RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDD 263 (328)
Q Consensus 205 aG~~~i~~~--------~et--~-~~-~--~-----~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e 263 (328)
+|++.+.+. ++. . .. + + .... ....+...++.++.+++...+++ ++|. -.|.+
T Consensus 727 ~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~s-g~~~~~~~~~~v~~v~~~~~~ip-----vi~~GGI~s~~ 800 (1025)
T 1gte_A 727 GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS-GTAIRPIALRAVTTIARALPGFP-----ILATGGIDSAE 800 (1025)
T ss_dssp HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE-SGGGHHHHHHHHHHHHHHSTTCC-----EEEESSCCSHH
T ss_pred cCCCEEEEeccccccccccccccccccccccccccCCCCC-cccchhHHHHHHHHHHHHcCCCC-----EEEecCcCCHH
Confidence 999998872 110 0 00 0 0 0000 01123333567777766333555 3344 35778
Q ss_pred HHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 264 DLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 264 ~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
|..+.+. +|++.+.+..-+.-.+ ..+...-.+.++..+...|++
T Consensus 801 da~~~l~----~Ga~~v~vg~~~l~~~------~~~~~~~~~~l~~~l~~~G~~ 844 (1025)
T 1gte_A 801 SGLQFLH----SGASVLQVCSAVQNQD------FTVIQDYCTGLKALLYLKSIE 844 (1025)
T ss_dssp HHHHHHH----TTCSEEEESHHHHTSC------TTHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHH----cCCCEEEEeeccccCC------ccHHHHHHHHHHHHHHHcCCC
Confidence 7776654 6999888853210001 111233356777888888985
No 244
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=65.41 E-value=64 Score=27.47 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE----Ec-CCC-------HH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML----GL-GES-------DD 263 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv----Gl-gEt-------~e 263 (328)
++.++.++++|++.+-+....+ . ..+.++..+.-+.+++ .|+.+.+..-. .+ ... .+
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~-------~--~~~~~~~~~~~~~l~~--~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~ 88 (294)
T 3vni_A 20 KYYIEKVAKLGFDILEIAASPL-------P--FYSDIQINELKACAHG--NGITLTVGHGPSAEQNLSSPDPDIRKNAKA 88 (294)
T ss_dssp HHHHHHHHHHTCSEEEEESTTG-------G--GCCHHHHHHHHHHHHH--TTCEEEEEECCCGGGCTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCccc-------C--CcCHHHHHHHHHHHHH--cCCeEEEeecCCCCcCCCCCCHHHHHHHHH
Confidence 7899999999999988764321 1 2345566666667778 99987652111 12 112 34
Q ss_pred HHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCC--------HHHHHHHHHHHHhcCCcee
Q 020304 264 DLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVT--------PEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 264 ~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~--------~~~~~~l~~~~~~~G~~~~ 319 (328)
.+.+.++.+.++|+..+.+ .+..+.+.. ..+... .+.+.++.+.+.+.|++..
T Consensus 89 ~~~~~i~~a~~lG~~~v~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 149 (294)
T 3vni_A 89 FYTDLLKRLYKLDVHLIGG-ALYSYWPID--YTKTIDKKGDWERSVESVREVAKVAEACGVDFC 149 (294)
T ss_dssp HHHHHHHHHHHHTCCEEEE-STTSCSSCC--TTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCCCeeec-cccCCCCCc--CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5667888889999998864 121111100 011111 2335566677788888754
No 245
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=65.24 E-value=21 Score=32.57 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=60.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC---cEEEEE-eCCCCCC-HHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECL-TSDFRGD-LRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~---~~i~~~-t~~~~~~-~e~l~~L~~aG 206 (328)
+++.+.+.++.+.+.|+..|.|-....- . .+..+.++++.+++..|+ +.+.+- .++.-+- ...+.. .++|
T Consensus 155 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~--~--~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laA-v~aG 229 (370)
T 3rmj_A 155 EIDFLAEICGAVIEAGATTINIPDTVGY--S--IPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAA-LKGG 229 (370)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECSSSC--C--CHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHH-HHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCccCC--c--CHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHH-HHhC
Confidence 4566788899999999999988543321 1 258899999999998775 555442 2332222 233333 3689
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHH
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLK 239 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~ 239 (328)
++.+...+..+- ... .....++.+-+++
T Consensus 230 a~~vd~tv~GlG---era--GN~~lE~vv~~L~ 257 (370)
T 3rmj_A 230 ARQVECTVNGLG---ERA--GNASVEEIVMALK 257 (370)
T ss_dssp CCEEEEBGGGCS---STT--CBCBHHHHHHHHH
T ss_pred CCEEEEeccccC---ccc--ccccHHHHHHHHH
Confidence 999876443221 111 1345666666554
No 246
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=65.23 E-value=74 Score=28.17 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=81.1
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCC-----cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDG-----GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~-----~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++...+.|+..+.+.......++.. -.+++.++++.+++. +++.+..+..+ +...++.|++.|++.+.++
T Consensus 184 ~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g---~~~~l~~l~~~g~d~~~~d 259 (338)
T 2eja_A 184 YLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRG---SSSFIDLAVDYRADALSVD 259 (338)
T ss_dssp HHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESS---HHHHHHHHTTSCCSEEECC
T ss_pred HHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCC---cHHHHHHHHHcCCCEEEeC
Confidence 33444567998776543221123321 136778888888876 45555444433 4679999999999988763
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh-CCCCEEeeecccCCCCCC
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS-IDVDILTLGQYLQPTPLH 292 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~-l~~~~i~i~~~l~PTp~~ 292 (328)
- ..+.++..+.++.+-. .|+.. .++ ..|.|++.+.++.+.+ ++...-.+ +.| .+
T Consensus 260 ~-------------~~dl~~~~~~~~~~l~--Gn~dp--~~l---~gt~e~i~~~v~~~l~~~g~~~g~I---~~~--g~ 314 (338)
T 2eja_A 260 W-------------SVDIPELFKIYDKGFQ--GNLEP--AVL---YASEEVIEEKTLGLLRRIPVKTRYV---FNL--GH 314 (338)
T ss_dssp T-------------TSCHHHHHHHCCSEEE--CCBCG--GGG---GSCHHHHHHHHHHHHTTCCCSSSEE---BCB--SS
T ss_pred C-------------CCCHHHHHHhCCeEEE--ECCCH--HHh---cCCHHHHHHHHHHHHHHhCCCCCeE---EeC--CC
Confidence 2 1233333332211122 44443 222 3478888776666644 45422112 112 11
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCC
Q 020304 293 LTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
...+..+++.+..+.+.+++.|.
T Consensus 315 -gi~~~~p~en~~a~v~~v~~~~~ 337 (338)
T 2eja_A 315 -GLAPDMELEKVKYLVDLVKSFPL 337 (338)
T ss_dssp -CCCTTSCHHHHHHHHHHHHTCCC
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcC
Confidence 13346677888888888877654
No 247
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=65.08 E-value=69 Score=29.47 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=71.2
Q ss_pred HHHHHHHCCCcEEEEE-eccCCC-----CC--CCcHHHHHHHHHHHHHhCCCcEEEEE-e-------CCC-------C--
Q 020304 139 TAKAIASWGVDYIVLT-SVDRDD-----IP--DGGSGHFARTVKAMKKQKPDIMVECL-T-------SDF-------R-- 193 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~-gg~~~~-----l~--~~~~~~l~~li~~ik~~~~~~~i~~~-t-------~~~-------~-- 193 (328)
..+.+++.|+..|.+. -.++.+ +. ..+.+++.++++..++. ++++.+- . |+. .
T Consensus 53 ~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~--GLkVlldfHysD~WadPg~Q~~P~aW~~~ 130 (399)
T 1ur4_A 53 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATAN--GMKLLADFHYSDFWADPAKQKAPKAWANL 130 (399)
T ss_dssp HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHT--TCEEEEEECSSSSCCSSSCCCCCGGGTTC
T ss_pred HHHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHC--CCEEEEEeccCCccCCcccccCccccccC
Confidence 4566677999988762 122211 11 12368888899998887 5555431 1 110 0
Q ss_pred -----------CCHHHHHHHHHcC--CcEEeechhhHHHHHhhhcCCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEE
Q 020304 194 -----------GDLRAVETLVHSG--LDVFAHNIETVKRLQRIVRDPRAGYEQ----SLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 194 -----------~~~e~l~~L~~aG--~~~i~~~~et~~~~~~~~~~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
-+.++++.|++.| ++.+.++-|+..-+ . ....++. +...++.+|+..++..|.+++--
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~---~--~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~ 205 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL---A--GETDWAKMSQLFNAGSQAVRETDSNILVALHFTN 205 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB---T--TBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEcccccccc---C--CcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 0235677788887 45666766643211 1 1234444 33444566776677765333221
Q ss_pred EcCCCHHHHHHHHHHHHhCC--CCEEeee
Q 020304 257 GLGESDDDLKEAMADLRSID--VDILTLG 283 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~--~~~i~i~ 283 (328)
+...+.+...++.+...+ +|.+.++
T Consensus 206 --~~~~~~~~~~~d~l~~~g~d~DvIG~s 232 (399)
T 1ur4_A 206 --PETSGRYAWIAETLHRHHVDYDVFASS 232 (399)
T ss_dssp --TTSTTHHHHHHHHHHHTTCCCSEEEEE
T ss_pred --CcchHHHHHHHHHHHHcCCCcCeEeEe
Confidence 333333433444444444 5667764
No 248
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=64.94 E-value=20 Score=30.37 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=53.5
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHH
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~ 218 (328)
.+-...+.|+.++.-.-|.-++....+.+.+.++.+.++.+.....+.. ..+. +...+.....+|+|.+.+..+.++
T Consensus 117 QA~~Aa~AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~Ila--AS~R-n~~~v~~aa~~G~d~~Tip~~vl~ 193 (223)
T 3s1x_A 117 QALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILV--ASIR-NPIHVLRSAVIGADVVTVPFNVLK 193 (223)
T ss_dssp HHHHHHHTTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEE--BSCC-SHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHcCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEE--EeCC-CHHHHHHHHHcCCCEEEeCHHHHH
Confidence 3444556788877443233223344457888888888888755555543 3333 777888888999999999998888
Q ss_pred HHH
Q 020304 219 RLQ 221 (328)
Q Consensus 219 ~~~ 221 (328)
++.
T Consensus 194 ~l~ 196 (223)
T 3s1x_A 194 SLM 196 (223)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 249
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=64.89 E-value=66 Score=28.21 Aligned_cols=85 Identities=7% Similarity=0.060 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHH-HHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVK-RLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMAD 271 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~-~~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~ 271 (328)
.|.-..+.+.++|++.+.++--++. .+. .-. ...+.++.+..++.+.+. ..+++.+++=.|+| +.+++.+++..
T Consensus 23 ~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~--~~vt~~em~~~~~~I~~~-~~~PviaD~d~Gyg-~~~~~~~~v~~ 98 (290)
T 2hjp_A 23 HNPLVAKLAEQAGFGGIWGSGFELSASYAVPDA--NILSMSTHLEMMRAIAST-VSIPLIADIDTGFG-NAVNVHYVVPQ 98 (290)
T ss_dssp SSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTT--TCSCHHHHHHHHHHHHTT-CSSCEEEECTTTTS-SHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCC--CCCCHHHHHHHHHHHHhc-CCCCEEEECCCCCC-CHHHHHHHHHH
Confidence 3788888999999999999754332 221 211 146899999999988652 45678888888888 89999999999
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|+.-+.+
T Consensus 99 l~~aGa~gv~i 109 (290)
T 2hjp_A 99 YEAAGASAIVM 109 (290)
T ss_dssp HHHHTCSEEEE
T ss_pred HHHhCCeEEEE
Confidence 99999998887
No 250
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=64.88 E-value=9.4 Score=32.64 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEE--ecc-CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLT--SVD-RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~--gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
+...+.++++.+.+.|++.+++- .|+ .|.+. .=.++++.+++..+. .++....+ .+..++.+.++|.|
T Consensus 24 D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t-----~G~~~v~~lr~~~~~-DvhLMv~~---p~~~i~~~~~aGAd 94 (237)
T 3cu2_A 24 NWLQLNEEVTTLLENQINVLHFDIADGQFSSLFT-----VGAIGIKYFPTHCFK-DVHLMVRN---QLEVAKAVVANGAN 94 (237)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBC-----BCTHHHHTSCTTSEE-EEEEECSC---HHHHHHHHHHTTCS
T ss_pred CcccHHHHHHHHHHcCCCEEEEEEecCccccchh-----hhHHHHHHHhhhCCC-CeEEEEEC---HHHHHHHHHHcCCC
Confidence 34466778888889999966553 333 12222 112567777766432 55554432 36789999999999
Q ss_pred EEeechhh
Q 020304 209 VFAHNIET 216 (328)
Q Consensus 209 ~i~~~~et 216 (328)
.+.+..|.
T Consensus 95 ~itvH~ea 102 (237)
T 3cu2_A 95 LVTLQLEQ 102 (237)
T ss_dssp EEEEETTC
T ss_pred EEEEecCC
Confidence 99987654
No 251
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=64.49 E-value=70 Score=28.68 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEeechhh---HHHHH-hhh---c-CCCCCHHH----HHHHHHHHHHhC-CCCeEEEeEEE----EcC
Q 020304 197 RAVETLVHSGLDVFAHNIET---VKRLQ-RIV---R-DPRAGYEQ----SLEVLKHAKLSK-KGLITKSSIML----GLG 259 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~et---~~~~~-~~~---~-~~~~~~~~----~l~~i~~~~~~~-~Gi~v~~~~iv----Glg 259 (328)
+.++..+++|+|.+-++.-- ++.+. ... . .-+.+.+. .+++++.+++.. .++.+..-+=. .-|
T Consensus 156 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g 235 (349)
T 3hgj_A 156 EGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGG 235 (349)
T ss_dssp HHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTS
T ss_pred HHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC
Confidence 33556778999998764321 23321 110 0 01224443 356666666643 23433322211 015
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+.++..+.++.+.+.|++.+.+.
T Consensus 236 ~~~~~~~~la~~L~~~Gvd~i~vs 259 (349)
T 3hgj_A 236 WSLEDTLAFARRLKELGVDLLDCS 259 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 688999999999999999999985
No 252
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=63.96 E-value=28 Score=26.66 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCC--CC-HHHHHHHHHcCCcEEee
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFR--GD-LRAVETLVHSGLDVFAH 212 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~--~~-~e~l~~L~~aG~~~i~~ 212 (328)
.+.++.+.+.+.+-+.+++-..+ ..+.+.++++.+++... ++.+.+...... -+ ++.-+.++++|++.+..
T Consensus 44 e~~v~~a~~~~~d~v~lS~~~~~-----~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~ 118 (137)
T 1ccw_A 44 ELFIKAAIETKADAILVSSLYGQ-----GEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYA 118 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECSST-----HHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECC
T ss_pred HHHHHHHHhcCCCEEEEEecCcC-----cHHHHHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEEC
Confidence 44555556666776666553321 13567777777777643 455543322111 11 23356678888887765
No 253
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=63.82 E-value=25 Score=31.08 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..++
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-st~~ai~la~~A~~ 109 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTT---AAEKLELLKAVREEVGDRAKLIAGVGTN-NTRTSVELAEAAAS 109 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSC---HHHHHHHHHHHHHHHTTTSEEEEECCCS-CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEecCCCC-CHHHHHHHHHHHHh
Confidence 3445567888889999999998865 5655565 456667777666532 246665544322 133 55667778
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 110 ~Gadavlv 117 (304)
T 3cpr_A 110 AGADGLLV 117 (304)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 254
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=63.68 E-value=22 Score=32.41 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
++..+....+|.|.+.+++..+.+...-- ...+++.|++.++.+++. .+++|..-. +|+|.+.++ +..+.+.
T Consensus 158 e~~~~~ve~~~adal~ihln~~qe~~~p~--Gd~~~~~~~~~I~~l~~~-~~~PVivK~-vg~g~s~e~----A~~l~~a 229 (365)
T 3sr7_A 158 QAGLQAVRDLQPLFLQVHINLMQELLMPE--GEREFRSWKKHLSDYAKK-LQLPFILKE-VGFGMDVKT----IQTAIDL 229 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECHHHHHTSSS--SCCCCHHHHHHHHHHHHH-CCSCEEEEE-CSSCCCHHH----HHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccccccccCCC--CCCcHHHHHHHHHHHHHh-hCCCEEEEE-CCCCCCHHH----HHHHHHc
Confidence 45666666889999888777665532211 134577888999988874 467765553 466777754 5667788
Q ss_pred CCCEEeee
Q 020304 276 DVDILTLG 283 (328)
Q Consensus 276 ~~~~i~i~ 283 (328)
|++.+.+.
T Consensus 230 Gad~I~V~ 237 (365)
T 3sr7_A 230 GVKTVDIS 237 (365)
T ss_dssp TCCEEECC
T ss_pred CCCEEEEe
Confidence 99998874
No 255
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=63.66 E-value=12 Score=31.96 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEE-eEEEEcCCCHH-------HHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKS-SIMLGLGESDD-------DLKE 267 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~-~~ivGlgEt~e-------~~~~ 267 (328)
++.++.++++|++.+-+.......... ..+.+ +.-+.+.+ .|+.+.+ +....+....+ .+.+
T Consensus 19 ~~~l~~~~~~G~~~vEl~~~~~~~~~~-----~~~~~---~~~~~l~~--~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (281)
T 3u0h_A 19 VLYLDLARETGYRYVDVPFHWLEAEAE-----RHGDA---AVEAMFQR--RGLVLANLGLPLNLYDSEPVFLRELSLLPD 88 (281)
T ss_dssp HHHHHHHHHTTCSEECCCHHHHHHHHH-----HHCHH---HHHHHHHT--TTCEECCEECCSCTTSCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCEEEecHHHHHHHhc-----ccCHH---HHHHHHHH--cCCceEEecccccccCCCHHHHHHHHHHHH
Confidence 577788888888877765433221100 11222 22333445 7776432 11112222222 2345
Q ss_pred HHHHHHhCCCCEEee
Q 020304 268 AMADLRSIDVDILTL 282 (328)
Q Consensus 268 ~l~~l~~l~~~~i~i 282 (328)
.++.+.++|+..+.+
T Consensus 89 ~i~~A~~lG~~~v~~ 103 (281)
T 3u0h_A 89 RARLCARLGARSVTA 103 (281)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 667777777777664
No 256
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=63.21 E-value=20 Score=29.42 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEecc-CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVD-RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.+..+.++.+.+.|+..+.+..|. ...... .-.+.++.+++..+++.+.+ .+++ +.+.+..+.++|.+.+.+
T Consensus 114 ~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~----~~~~~i~~l~~~~~~~~i~~--~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 114 DDLPARVRLLEEAGADMLAVHTGTDQQAAGR----KPIDDLITMLKVRRKARIAV--AGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SSHHHHHHHHHHHTCCEEEEECCHHHHHTTC----CSHHHHHHHHHHCSSCEEEE--ESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCCcccccCC----CCHHHHHHHHHHcCCCcEEE--ECCC-CHHHHHHHHHcCCCEEEE
Confidence 455677888888899987664221 000110 12356677777655676643 3343 688899999999999988
Q ss_pred c
Q 020304 213 N 213 (328)
Q Consensus 213 ~ 213 (328)
+
T Consensus 187 G 187 (211)
T 3f4w_A 187 G 187 (211)
T ss_dssp C
T ss_pred C
Confidence 7
No 257
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=63.00 E-value=23 Score=30.55 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 79 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 135 (255)
T 1tre_A 79 SAAMLKDIGAQYIIIGH----SERRTYH--KESDELIAKKFAVLKE--QGLT----PVLCIGETEAENE 135 (255)
T ss_dssp CHHHHHHHTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--TTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----ccccccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678899999988753 2233333 5677888888999999 9997 4666799988743
No 258
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=62.89 E-value=8.8 Score=34.50 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=46.5
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-------cHHHHHHHHHHHHHhCCCcEEE
Q 020304 121 AVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 121 ~~~~~~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-------~~~~l~~li~~ik~~~~~~~i~ 186 (328)
.+++..+..+.+.+.+.++++++.+.|++.|.+.|..++...|. .-.-+.+.++.||+.+|++.+.
T Consensus 60 ~I~SMPGv~r~sid~l~~~~~~~~~lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAir~iK~~~P~l~Vi 132 (356)
T 3obk_A 60 PIPSMPGQSRLSMEDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLL 132 (356)
T ss_dssp ECTTSTTCEEECHHHHHHHHHHHHHTTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEE
T ss_pred ccCCCCCceEECHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHHCCCCEEE
Confidence 44444544556667889999999999999998887643333221 0135677899999999997764
No 259
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.86 E-value=47 Score=26.21 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=46.8
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
..+.++.+.+.+.+-|.+++-..+ ..+.+.++++.+++..+ ++.+.+..+ ...+..+.+++.|+|.+..
T Consensus 58 ~e~lv~aa~~~~~diV~lS~~~~~-----~~~~~~~~i~~L~~~g~~~i~v~vGG~---~~~~~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 58 PEQVAMAAVQEDVDVIGVSILNGA-----HLHLMKRLMAKLRELGADDIPVVLGGT---IPIPDLEPLRSLGIREIFL 127 (161)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSC-----HHHHHHHHHHHHHHTTCTTSCEEEEEC---CCHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhcCCCEEEEEeechh-----hHHHHHHHHHHHHhcCCCCCEEEEeCC---CchhcHHHHHHCCCcEEEC
Confidence 345667777888888887754331 15788899999988753 566644322 2455667789999998664
No 260
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=62.38 E-value=18 Score=31.89 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCc---EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHH
Q 020304 196 LRAVETLVHSGLD---VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 196 ~e~l~~L~~aG~~---~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l 272 (328)
.+.++.+.++|+| .+.+|.-+-. . +..+.-+.+.+...+.++.+++. .++++..-+ ..+-+.+++.+.++.+
T Consensus 109 ~~~a~~~~~~g~d~~~~iein~~~P~-~-~g~~~~g~~~~~~~~ii~~vr~~-~~~Pv~vK~--~~~~~~~~~~~~a~~~ 183 (314)
T 2e6f_A 109 VAMVRRLAPVAQEKGVLLELNLSCPN-V-PGKPQVAYDFEAMRTYLQQVSLA-YGLPFGVKM--PPYFDIAHFDTAAAVL 183 (314)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECCCCC-S-TTCCCGGGSHHHHHHHHHHHHHH-HCSCEEEEE--CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCceEEEEcCCCC-C-CCchhhcCCHHHHHHHHHHHHHh-cCCCEEEEE--CCCCCHHHHHHHHHHH
Confidence 3667788888989 7777552111 1 10000123677778888888772 155433221 2245788899999999
Q ss_pred HhCC-CCEEeeeccc------CC-CCCC-cc--------cCCCCCHHHHHHHHHHHHhc-CCceeeec
Q 020304 273 RSID-VDILTLGQYL------QP-TPLH-LT--------VKEYVTPEKFDFWKAYGESI-GFRYVASG 322 (328)
Q Consensus 273 ~~l~-~~~i~i~~~l------~P-Tp~~-~~--------~~~~~~~~~~~~l~~~~~~~-G~~~~~~g 322 (328)
.+.| ++.+.+.+.. .+ +... .. .-....+..++.++++.... .+..+..|
T Consensus 184 ~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~G 251 (314)
T 2e6f_A 184 NEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCG 251 (314)
T ss_dssp HTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEES
T ss_pred HhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEEC
Confidence 9999 9988764322 01 0000 00 00112244466677777776 77777776
No 261
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=62.37 E-value=8.5 Score=33.82 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH---HHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL---RAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~---e~l~~L~~aG 206 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+...+ +.+.+.. .-+. +..+..+++|
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls---~~Er~~v~~~~~~~~~g--vi~Gvg~-~~t~~ai~la~~A~~~G 90 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGTTGLGPALS---LQEKMELTDAATSAARR--VIVQVAS-LNADEAIALAKYAESRG 90 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSC---HHHHHHHHHHHHHHCSS--EEEECCC-SSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCC--EEEeeCC-CCHHHHHHHHHHHHhcC
Confidence 344567888888899999998865 4555555 46777888888776555 4333322 1133 5566677889
Q ss_pred CcEEee
Q 020304 207 LDVFAH 212 (328)
Q Consensus 207 ~~~i~~ 212 (328)
.|.+.+
T Consensus 91 adavlv 96 (286)
T 2r91_A 91 AEAVAS 96 (286)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998876
No 262
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=62.32 E-value=21 Score=30.97 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 86 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 142 (261)
T 1m6j_A 86 HVGMLVDCQVPYVILGH----SERRQIF--HESNEQVAEKVKVAID--AGLK----VIACIGETEAQRI 142 (261)
T ss_dssp BHHHHHHTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--HTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46788999999988753 2333333 5677888889999999 9997 4666799988876
No 263
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=62.14 E-value=40 Score=29.35 Aligned_cols=111 Identities=9% Similarity=0.051 Sum_probs=72.3
Q ss_pred CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCC--------CCHHHHHHHHHcCCcEEeechhhHHH
Q 020304 148 VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--------GDLRAVETLVHSGLDVFAHNIETVKR 219 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~--------~~~e~l~~L~~aG~~~i~~~~et~~~ 219 (328)
++.+-|.+|....++ + +.+.++..++. ++.+. +.+.. .-++.++..++.|++.+-++.-+.
T Consensus 66 ID~lKfg~GTs~l~~----~-l~ekI~l~~~~--gV~v~--~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti-- 134 (276)
T 1u83_A 66 IDFVKFGWGTSLLTK----D-LEEKISTLKEH--DITFF--FGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTL-- 134 (276)
T ss_dssp CCEEEECTTGGGGCT----T-HHHHHHHHHHT--TCEEE--ECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSS--
T ss_pred cceEEecCcchhhhH----H-HHHHHHHHHHc--CCeEe--CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcc--
Confidence 778888877754443 3 88888888887 66663 22200 237899999999999998865332
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--C-----CCHHHHHHHHHHHHhCCCCEEee
Q 020304 220 LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--G-----ESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--g-----Et~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+.+++.+.|+.+++ . +.|.+.+ |- + .+.+++.+.++.-.+.|++.|.+
T Consensus 135 --------~l~~~~~~~lI~~a~~--~-f~Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dLeAGA~~Vii 191 (276)
T 1u83_A 135 --------PMTNKEKAAYIADFSD--E-FLVLSEV--GSKDAELASRQSSEEWLEYIVEDMEAGAEKVIT 191 (276)
T ss_dssp --------CCCHHHHHHHHHHHTT--T-SEEEEEC--SCCC------CCSTHHHHHHHHHHHHTEEEEEE
T ss_pred --------cCCHHHHHHHHHHHHh--h-cEEeeec--cccCccccCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3456777778877776 5 5443322 33 2 34566667776666777776655
No 264
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=62.10 E-value=22 Score=31.65 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+....+.+.+.+... -+. +..+..+++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt---~~Er~~v~~~~v~~~grvpViaGvg~~-~t~~ai~la~~A~~~ 101 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLD---AAEAEAVATRFIKRAKSMQVIVGVSAP-GFAAMRRLARLSMDA 101 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSC---HHHHHHHHHHHHHHCTTSEEEEECCCS-SHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCC---HHHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHHHHHc
Confidence 3445567888899999999998855 5655565 466677787776654356765544322 133 566777888
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|+|.+.+
T Consensus 102 Gadavlv 108 (313)
T 3dz1_A 102 GAAGVMI 108 (313)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999876
No 265
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=62.00 E-value=27 Score=32.15 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=50.5
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
..+.++.+.+.|++.+.+..... ..+.+.++++.+++..+++.+.+ . ...+.+.++.+.++|+|.+.++.
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~~~g------~~~~~~e~i~~ir~~~~~~pviv-~--~v~~~~~a~~a~~~Gad~I~vg~ 223 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDSAHG------HSTRIIELIKKIKTKYPNLDLIA-G--NIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCC------SSHHHHHHHHHHHHHCTTCEEEE-E--EECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHHHHHHHHHCCCCeEEE-c--CCCcHHHHHHHHhcCCCEEEECC
Confidence 45667777889999887732211 13678899999999876776653 1 12378999999999999998843
No 266
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=61.85 E-value=45 Score=27.98 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHhCCCcEEEEEeC-CCCCCHHH----HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 177 KKQKPDIMVECLTS-DFRGDLRA----VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 177 k~~~~~~~i~~~t~-~~~~~~e~----l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
....++..+.++.+ ..+.+++. .+.+.+.|+..-.+-+|..+.... .+.+...+.++.+++ .|+.+.
T Consensus 89 ~~~~~~~~l~iNls~~~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~------~~~~~~~~~l~~L~~--~G~~ia 160 (250)
T 4f3h_A 89 QRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVF------THLRNAQQFLASVSA--MGCKVG 160 (250)
T ss_dssp HHTTCCCEEEEECCGGGSSCHHHHHHHHHHHHHTTCCGGGEEEEEEHHHHH------HSHHHHHHHHHHHHT--TTCEEE
T ss_pred HhcCCCceEEEEeCHHHhCCcHHHHHHHHHHHHcCCCcceEEEEEechhhh------cCHHHHHHHHHHHHH--CCCEEE
Confidence 33334555555433 33345544 445556776544455555544221 145678889999999 999976
Q ss_pred EeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec-ccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 252 SSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ-YLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 252 ~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~-~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
.+= +|.|. ..+..+..+.++.+-+-. ++.. .. .......-+..+..++.++|.+.++.|
T Consensus 161 lDd-fG~g~------s~l~~L~~l~~d~iKiD~~~v~~--~~---~~~~~~~~l~~i~~~a~~l~~~viaeG 220 (250)
T 4f3h_A 161 LEQ-FGSGL------DSFQLLAHFQPAFLKLDRSITGD--IA---SARESQEKIREITSRAQPTGILTVAEF 220 (250)
T ss_dssp EEE-ETSST------HHHHHHTTSCCSEEEECHHHHTT--TT---TCSHHHHHHHHTHHHHHHHTCEEEECC
T ss_pred EeC-CCCCc------hHHHHHhhCCCCEEEECHHHHHh--Hh---cChhhHHHHHHHHHHHHHcCCEEEEec
Confidence 652 34333 256788889999988842 1211 10 111123345667777888888887776
No 267
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=61.42 E-value=96 Score=29.98 Aligned_cols=136 Identities=9% Similarity=0.060 Sum_probs=80.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc--CCcE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GLDV 209 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a--G~~~ 209 (328)
+.+++.+.+++..+.|++-+-+.-|..+ . ...+.+.+++..+++.. ++.+++-|. +.++++.-.++ |.+-
T Consensus 338 ~~~~a~~~A~~~v~~GAdiIDIgpg~~~-v--~~~ee~~rvv~~i~~~~-~vpisIDT~----~~~v~eaal~~~~G~~i 409 (566)
T 1q7z_A 338 NEEIVIKEAKTQVEKGAEVLDVNFGIES-Q--IDVRYVEKIVQTLPYVS-NVPLSLDIQ----NVDLTERALRAYPGRSL 409 (566)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECSSGG-G--SCHHHHHHHHHHHHHHT-CSCEEEECC----CHHHHHHHHHHCSSCCE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCC-C--CHHHHHHHHHHHHHhhC-CceEEEeCC----CHHHHHHHHHhcCCCCE
Confidence 4567788889999999997776522211 1 13577888888887663 666665442 68888887777 8665
Q ss_pred Ee-echhh--HHHHHhhh------------cC-CCCCHHH----HHHHHHHHHHhCCCCe--EEEeEEE---EcCCCHHH
Q 020304 210 FA-HNIET--VKRLQRIV------------RD-PRAGYEQ----SLEVLKHAKLSKKGLI--TKSSIML---GLGESDDD 264 (328)
Q Consensus 210 i~-~~~et--~~~~~~~~------------~~-~~~~~~~----~l~~i~~~~~~~~Gi~--v~~~~iv---GlgEt~e~ 264 (328)
++ ++.+. ++++.+.+ .+ ...++++ ..+.++.+.+ .|+. +..+-.+ |+|...-+
T Consensus 410 INdis~~~~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~--~Gi~~~IilDPg~~~igfgk~~~~ 487 (566)
T 1q7z_A 410 FNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILER--HDFSDRVIFDPGVLPLGAEGKPVE 487 (566)
T ss_dssp EEEEESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHH--TTCGGGEEEECCCCCTTTTCCHHH
T ss_pred EEECCcchhhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHH--CCCCCcEEEeCCCCcccCcHHHHH
Confidence 54 22221 12221111 00 1123444 4445556677 8984 5555555 66554455
Q ss_pred HHHHHHHHHhCCC
Q 020304 265 LKEAMADLRSIDV 277 (328)
Q Consensus 265 ~~~~l~~l~~l~~ 277 (328)
+.+.++.++++|.
T Consensus 488 ~l~~~~~~~~~g~ 500 (566)
T 1q7z_A 488 VLKTIEFISSKGF 500 (566)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 6667777777754
No 268
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=61.33 E-value=22 Score=31.35 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCC--CcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKP--DIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~--~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+... .+.+.+.+... -+. +..+...+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls---~~Er~~v~~~~~~~~~g~rvpviaGvg~~-~t~~ai~la~~a~~ 101 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESATLT---HEEHRTCIEIAVETCKGTKVKVLAGAGSN-ATHEAVGLAKFAKE 101 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEEECCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCCeEEEeCCCC-CHHHHHHHHHHHHH
Confidence 344567888888899999998865 5544555 4666677777665432 36665544322 133 56677778
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 102 ~Gadavlv 109 (301)
T 3m5v_A 102 HGADGILS 109 (301)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 269
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=61.04 E-value=14 Score=31.56 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCCCCCCHHHHHHH----HHcCCc
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSDFRGDLRAVETL----VHSGLD 208 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~~~~~~e~l~~L----~~aG~~ 208 (328)
+.-..+++++.+.|++++-+.- +...+.+++.+++.+-++.+++...+..+.+ +-.+. ++++.+..+ .++|.|
T Consensus 95 ~~Kv~Ea~~Ai~~GAdEIDmVi-Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~-Lt~eei~~a~~ia~~aGAD 172 (239)
T 3ngj_A 95 EVKAYETKVAVEQGAEEVDMVI-NIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY-LTNEEKVEVCKRCVAAGAE 172 (239)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC-CHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG-SCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEe-ehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC-CCHHHHHHHHHHHHHHCcC
Confidence 3346788888899999885541 1111233456777777787776544433332 23334 577766666 789999
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+--+-- + .+.+.+++++.. ++.... ..+.+.+ -|=--|.++..+.+ ++|.+.+..
T Consensus 173 fVKTSTG----f----~~ggAt~~dv~l-mr~~vg--~~v~VKa---sGGIrt~~da~~~i----~aGA~riGt 228 (239)
T 3ngj_A 173 YVKTSTG----F----GTHGATPEDVKL-MKDTVG--DKALVKA---AGGIRTFDDAMKMI----NNGASRIGA 228 (239)
T ss_dssp EEECCCS----S----SSCCCCHHHHHH-HHHHHG--GGSEEEE---ESSCCSHHHHHHHH----HTTEEEEEE
T ss_pred EEECCCC----C----CCCCCCHHHHHH-HHHhhC--CCceEEE---eCCCCCHHHHHHHH----Hhcccceec
Confidence 8865410 0 012456665333 333333 3343322 12123555554444 677777665
No 270
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=60.35 E-value=20 Score=32.18 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=40.3
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML 256 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv 256 (328)
..+.++.|+++|++.+.+.+.. ++ . +...+.+..++.++.+++ .|+.+..++-+
T Consensus 29 ~~~~~~ilk~~G~n~vRlri~v-~P--~---~g~~d~~~~~~~~~~ak~--~Gl~v~ld~hy 82 (334)
T 1fob_A 29 TQALETILADAGINSIRQRVWV-NP--S---DGSYDLDYNLELAKRVKA--AGMSLYLDLHL 82 (334)
T ss_dssp BCCHHHHHHHHTCCEEEEEECS-CC--T---TCTTCHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CchHHHHHHHcCCCEEEEEEEE-CC--C---CCccCHHHHHHHHHHHHH--CCCEEEEEecc
Confidence 3578999999999999874321 00 0 124678999999999999 99998777644
No 271
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=60.34 E-value=98 Score=27.95 Aligned_cols=127 Identities=24% Similarity=0.238 Sum_probs=77.9
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh-
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE- 215 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e- 215 (328)
.+.++.+.+.|++.+++..... ..+.+.+.++.+++.. ++.+.+- + ..+.+.++.+.++|+|.+.++..
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G------~~~~~~~~i~~i~~~~-~~~Vivg-~--v~t~e~A~~l~~aGaD~I~VG~~~ 176 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHG------HSLNIIRTLKEIKSKM-NIDVIVG-N--VVTEEATKELIENGADGIKVGIGP 176 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCC------SBHHHHHHHHHHHHHC-CCEEEEE-E--ECSHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHcCcCeEEEeCCCC------CcHHHHHHHHHHHHhc-CCcEEEc-c--CCCHHHHHHHHHcCcCEEEEecCC
Confidence 6678888899999888743322 1367888999999876 6666431 1 13789999999999999987532
Q ss_pred ----hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 216 ----TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 216 ----t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+...... .. ..+++.+.++.+.+++ .++++ |..=| .+.+++.+.+. +|++.+.+...+
T Consensus 177 Gs~~~tr~~~g-~g--~p~~~~i~~v~~~~~~--~~iPV----IA~GGI~~~~di~kala----~GAd~V~vGs~~ 239 (361)
T 3khj_A 177 GSICTTRIVAG-VG--VPQITAIEKCSSVASK--FGIPI----IADGGIRYSGDIGKALA----VGASSVMIGSIL 239 (361)
T ss_dssp CTTCCHHHHTC-BC--CCHHHHHHHHHHHHHH--HTCCE----EEESCCCSHHHHHHHHH----HTCSEEEESTTT
T ss_pred CcCCCcccccC-CC--CCcHHHHHHHHHHHhh--cCCeE----EEECCCCCHHHHHHHHH----cCCCEEEEChhh
Confidence 2111111 11 1234444444444445 56653 33223 36777666543 589888876544
No 272
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=60.22 E-value=79 Score=26.82 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCC---CCHHHHHHHHHcCCcEEee----------chhhHHHHHhhhcCCCCCHHHHH
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFR---GDLRAVETLVHSGLDVFAH----------NIETVKRLQRIVRDPRAGYEQSL 235 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~---~~~e~l~~L~~aG~~~i~~----------~~et~~~~~~~~~~~~~~~~~~l 235 (328)
+.+.++.+++.....-+-.++++.. ...+.++.|.++|+|.+.+ +..+-....+... .+.+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~-~g~~~~~~~ 83 (262)
T 1rd5_A 5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALA-SGTTMDAVL 83 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHT-TTCCHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHH-cCCCHHHHH
Q ss_pred HHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcC
Q 020304 236 EVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIG 315 (328)
Q Consensus 236 ~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G 315 (328)
+.++.+++. .+++ ++.+......+...++.+.+.|++.+.+ ...+.++..++...+++.|
T Consensus 84 ~~i~~ir~~-~~~P-----v~~m~~~~~~~~~~~~~a~~aGadgv~v--------------~d~~~~~~~~~~~~~~~~g 143 (262)
T 1rd5_A 84 EMLREVTPE-LSCP-----VVLLSYYKPIMFRSLAKMKEAGVHGLIV--------------PDLPYVAAHSLWSEAKNNN 143 (262)
T ss_dssp HHHHHHGGG-CSSC-----EEEECCSHHHHSCCTHHHHHTTCCEEEC--------------TTCBTTTHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCC-----EEEEecCcHHHHHHHHHHHHcCCCEEEE--------------cCCChhhHHHHHHHHHHcC
Q ss_pred Ccee
Q 020304 316 FRYV 319 (328)
Q Consensus 316 ~~~~ 319 (328)
++.+
T Consensus 144 ~~~i 147 (262)
T 1rd5_A 144 LELV 147 (262)
T ss_dssp CEEC
T ss_pred CceE
No 273
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=60.19 E-value=21 Score=31.47 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=68.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCC---CcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHH----HHHHHHc
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPD---GGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRA----VETLVHS 205 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~---~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~----l~~L~~a 205 (328)
+....+++.+.+.|+++|-+.- +...+.. ++.+.+.+-++.+++...+..+.+. -++.+-+++. .+...++
T Consensus 100 e~K~~Ea~~Av~~GAdEIDmVi-nig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~A 178 (297)
T 4eiv_A 100 DTVSLEAVGALKDGADEIECLI-DWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEG 178 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC-CTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeee-eHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHh
Confidence 4446788888899999985541 1111223 4456777777777765444444432 3344435553 2455678
Q ss_pred CCcEEeec---------hhhHHHHHhhhcC--CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 206 GLDVFAHN---------IETVKRLQRIVRD--PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 206 G~~~i~~~---------~et~~~~~~~~~~--~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
|.|.+--+ ++...-|.+.++. .+++-+.+++.+..-......+.+++ -.|=-.|.++..+.+..+++
T Consensus 179 GADFVKTSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKA--s~GGIrt~e~A~~~i~~~~e 256 (297)
T 4eiv_A 179 GADFLQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKI--EVGDVHMAETADFLMQMIFE 256 (297)
T ss_dssp TCSEEECCCSSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEE--ECTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEcCCCCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 99988531 1111112222110 01222233333322110001122221 11223678889899998888
Q ss_pred CCCCEE
Q 020304 275 IDVDIL 280 (328)
Q Consensus 275 l~~~~i 280 (328)
+|.+++
T Consensus 257 lG~~wl 262 (297)
T 4eiv_A 257 NGPRSI 262 (297)
T ss_dssp HCGGGC
T ss_pred hCcccc
Confidence 887754
No 274
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=60.19 E-value=31 Score=30.47 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCC---HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGD---LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~---~e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+. ...+.+.+.+... -+ -+..+...+
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~a~~ 108 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTT---DGEKIELLRAVLEAVGDRARVIAGAGTY-DTAHSIRLAKACAA 108 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTTSEEEEECCCS-CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCC---HHHHHHHHHHHHHHhCCCCeEEEeCCCC-CHHHHHHHHHHHHH
Confidence 3445567888899999999998865 5555555 46666777776653 2346765544322 13 356777788
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 109 ~Gadavlv 116 (304)
T 3l21_A 109 EGAHGLLV 116 (304)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999876
No 275
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=59.99 E-value=88 Score=27.30 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=7.6
Q ss_pred HHHHHHHHHcCCcE
Q 020304 196 LRAVETLVHSGLDV 209 (328)
Q Consensus 196 ~e~l~~L~~aG~~~ 209 (328)
.+.++.+.++|+..
T Consensus 139 ~~~I~al~~agIpV 152 (281)
T 1oy0_A 139 AEQIACLTAAGIPV 152 (281)
T ss_dssp HHHHHHHHHHTCCE
T ss_pred HHHHHHHHHCCCCE
Confidence 45566666666443
No 276
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=59.91 E-value=45 Score=29.82 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=77.8
Q ss_pred HHHHHHHCCCcEEEEEeccCCCCCCC-----cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 139 TAKAIASWGVDYIVLTSVDRDDIPDG-----GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~gg~~~~l~~~-----~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++...+.|++.+.+.......++.. -.+++.++++.+++..+++.+.-+ .+. ....++.|.+.|++.+.+.
T Consensus 198 ~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~ih~-c~g--~~~~l~~l~~~g~d~~~~d 274 (353)
T 1j93_A 198 YIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILY-ASG--SGGLLERLPLTGVDVVSLD 274 (353)
T ss_dssp HHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEE-CSS--CTTTGGGGGGGCCSEEECC
T ss_pred HHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCEEEE-CCC--hHHHHHHHHhcCCCEEEeC
Confidence 34445578998776642211123311 136777778888876444433212 222 2356788889999988763
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHH--HHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHH-hCCCCEEeeecccCCCC
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLK--HAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR-SIDVDILTLGQYLQPTP 290 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~--~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~-~l~~~~i~i~~~l~PTp 290 (328)
-. .+.++..+.+. .+.. .|+.. .+ +..|.|++.+.++.+. .++.. .+ .+.|
T Consensus 275 ~~-------------~d~~~~~~~~g~~~~l~--Gnldp--~~---l~~~~e~i~~~v~~~l~~~~~~--g~--I~~~-- 328 (353)
T 1j93_A 275 WT-------------VDMADGRRRLGPNVAIQ--GNVDP--GV---LFGSKEFITNRINDTVKKAGKG--KH--ILNL-- 328 (353)
T ss_dssp TT-------------SCHHHHHHHTCSSSEEE--CCBCG--GG---GGSCHHHHHHHHHHHHHHHCSS--SE--EBCB--
T ss_pred CC-------------CCHHHHHHHcCCCeEEE--ecCCH--HH---HcCCHHHHHHHHHHHHHHhCCC--CE--EEeC--
Confidence 21 12222222110 0111 33332 11 1457788776666554 34543 11 1112
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhcCC
Q 020304 291 LHLTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
.+ ...+..+++.+..+.+.+++.|+
T Consensus 329 g~-gi~~~~~~enl~a~ve~v~~~~~ 353 (353)
T 1j93_A 329 GH-GIKVGTPEENFAHFFEIAKGLRY 353 (353)
T ss_dssp SS-CCCTTCCHHHHHHHHHHHHTCCC
T ss_pred CC-CCCCCCCHHHHHHHHHHHHHhcC
Confidence 11 13356778889999999888875
No 277
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=59.89 E-value=9.3 Score=34.11 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=42.8
Q ss_pred CCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC-------CcHHHHHHHHHHHHHhCCCcEEE
Q 020304 128 PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-------GGSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 128 ~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~-------~~~~~l~~li~~ik~~~~~~~i~ 186 (328)
..+.+.+.+.++++++.+.|++.|.+.|..+....| .+-.-+.+.++.||+.+|++.+.
T Consensus 60 v~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vi 125 (337)
T 1w5q_A 60 VERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGII 125 (337)
T ss_dssp CEEEEHHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEE
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEE
Confidence 334456778899999999999999998864322121 01146788899999999997764
No 278
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=59.88 E-value=22 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=41.6
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 78 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 134 (252)
T 2btm_A 78 SPVMLKDLGVTYVILGH----SERRQMF--AETDETVNKKVLAAFT--RGLI----PIICCGESLEERE 134 (252)
T ss_dssp CHHHHHHHTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--HTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEeCc----hhccccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678899999988753 2233332 5677778888999999 9997 4666799988654
No 279
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=59.31 E-value=67 Score=27.58 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=70.7
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-ch
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~ 214 (328)
+.+-++.+++.|++.+.+ ++++ ++...++.+..++. ++....+.+... +++.++.+.+.+-..++. +.
T Consensus 105 ~e~F~~~~~~aGvdG~Ii-----pDLP---~eE~~~~~~~~~~~--Gl~~I~lvaP~t-~~eRi~~ia~~a~gFiY~Vs~ 173 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIV-----PELS---FEESDDLIKECERY--NIALITLVSVTT-PKERVKKLVKHAKGFIYLLAS 173 (252)
T ss_dssp HHHHHHHHHHTTEEEEEC-----TTCC---GGGCHHHHHHHHHT--TCEECEEEETTS-CHHHHHHHHTTCCSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCC-cHHHHHHHHHhCCCeEEEEec
Confidence 356777888899988876 4465 35566677777776 555433333322 589999998886554443 21
Q ss_pred hhHHHHHhhhcCCC-CCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCC-CHHHHHHHHHHHHhCCCCEEeeec
Q 020304 215 ETVKRLQRIVRDPR-AGYEQSLEVLKHAKLSKKGLITKSSIMLGLGE-SDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 215 et~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgE-t~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
- -+++.. ...++..+.++.+++. .+ .-+++|+|= |.+++.+. .+ .+|-+-+.+
T Consensus 174 ~-------GvTG~~~~~~~~~~~~v~~vr~~-~~----~Pv~vGfGIst~e~a~~~----~~-~ADGVIVGS 228 (252)
T 3tha_A 174 I-------GITGTKSVEEAILQDKVKEIRSF-TN----LPIFVGFGIQNNQDVKRM----RK-VADGVIVGT 228 (252)
T ss_dssp S-------CSSSCSHHHHHHHHHHHHHHHTT-CC----SCEEEESSCCSHHHHHHH----TT-TSSEEEECH
T ss_pred C-------CCCCcccCCCHHHHHHHHHHHHh-cC----CcEEEEcCcCCHHHHHHH----Hh-cCCEEEECH
Confidence 0 011000 0123456677777772 23 347889965 77776543 33 377766644
No 280
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=59.31 E-value=82 Score=28.39 Aligned_cols=147 Identities=10% Similarity=0.015 Sum_probs=81.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~L~~aG 206 (328)
++++..+.++++.+.|++.+-+--|.. .+.-.+.++++++.. +++.+.+-.|... +. +.++.|.+.|
T Consensus 140 ~~e~~~~~a~~~~~~G~~~~K~KvG~~-------~~~d~~~v~avR~~~g~~~~l~vDaN~~~-~~~~A~~~~~~l~~~~ 211 (368)
T 3q45_A 140 EPHKMAADAVQIKKNGFEIIKVKVGGS-------KELDVERIRMIREAAGDSITLRIDANQGW-SVETAIETLTLLEPYN 211 (368)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSC-------HHHHHHHHHHHHHHHCSSSEEEEECTTCB-CHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCC-------HHHHHHHHHHHHHHhCCCCeEEEECCCCC-ChHHHHHHHHHHhhcC
Confidence 456777888888899999988754321 355567888888764 6776655444432 43 4566677777
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+..+-= | ...++ ++.++.+++. .++++. .+|+..+..+..+.++.-.++.+.+-
T Consensus 212 i~~iEq--------------P-~~~~~-~~~~~~l~~~-~~iPIa------~dE~~~~~~~~~~~~~~~~~d~v~~k--- 265 (368)
T 3q45_A 212 IQHCEE--------------P-VSRNL-YTALPKIRQA-CRIPIM------ADESCCNSFDAERLIQIQACDSFNLK--- 265 (368)
T ss_dssp CSCEEC--------------C-BCGGG-GGGHHHHHHT-CSSCEE------ESTTCCSHHHHHHHHHTTCCSEEEEC---
T ss_pred CCEEEC--------------C-CChhH-HHHHHHHHhh-CCCCEE------EcCCcCCHHHHHHHHHcCCCCeEEec---
Confidence 665531 0 11111 1223333331 444432 24444444444445555556766552
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceee
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|+.. +. ..+..++.++|++.|+..+.
T Consensus 266 -~~~~-----GG--it~~~~i~~~A~~~gi~~~~ 291 (368)
T 3q45_A 266 -LSKS-----AG--ITNALNIIRLAEQAHMPVQV 291 (368)
T ss_dssp -TTTT-----TS--HHHHHHHHHHHHHTTCCEEE
T ss_pred -hhhc-----CC--HHHHHHHHHHHHHcCCcEEe
Confidence 2221 11 33456677788888887664
No 281
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=59.20 E-value=64 Score=28.24 Aligned_cols=118 Identities=10% Similarity=0.109 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCC--CCC-----------CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHH
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDD--IPD-----------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~--l~~-----------~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~ 203 (328)
-..++.+++.|+..+ + +.|. +-| -..+...++++..++. ++.-..+. .+++..+.|.
T Consensus 111 g~~Le~lk~~Gf~Gv-~---N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~--gL~Ti~~v----~~~eeA~amA 180 (286)
T 2p10_A 111 STFLRELKEIGFAGV-Q---NFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL--DLLTTPYV----FSPEDAVAMA 180 (286)
T ss_dssp HHHHHHHHHHTCCEE-E---ECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCEECCEE----CSHHHHHHHH
T ss_pred HHHHHHHHHhCCceE-E---ECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC--CCeEEEec----CCHHHHHHHH
Confidence 445588888999877 3 1110 001 1257788888888877 44322223 3789999999
Q ss_pred HcCCcEEeechh--hHHHHHhhhcCCCCCHH----HHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHH
Q 020304 204 HSGLDVFAHNIE--TVKRLQRIVRDPRAGYE----QSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMAD 271 (328)
Q Consensus 204 ~aG~~~i~~~~e--t~~~~~~~~~~~~~~~~----~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~ 271 (328)
++|.|.+...+- +...+.-. ...+.+ .+-+..+.+++..+++. ++.|= -.|.+|+...++.
T Consensus 181 ~agpDiI~~h~glT~gglIG~~---~avs~~~~~e~i~~i~~a~~~vnpdvi----vLc~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 181 KAGADILVCHMGLTTGGAIGAR---SGKSMDDCVSLINECIEAARTIRDDII----ILSHGGPIANPEDARFILDS 249 (286)
T ss_dssp HHTCSEEEEECSCC------------CCCHHHHHHHHHHHHHHHHHHCSCCE----EEEESTTCCSHHHHHHHHHH
T ss_pred HcCCCEEEECCCCCCCCcccCC---CcccHHHhHHHHHHHHHHHHHhCCCcE----EEecCCCCCCHHHHHHHHhc
Confidence 999999876432 22222211 123333 34455555566445543 34432 2788998877754
No 282
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=59.19 E-value=23 Score=30.60 Aligned_cols=57 Identities=21% Similarity=0.147 Sum_probs=41.4
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 81 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 137 (256)
T 1aw2_A 81 SPAMLKEFGATHIIIGH----SERREYH--AESDEFVAKKFAFLKE--NGLT----PVLCIGESDAQNE 137 (256)
T ss_dssp CHHHHHHHTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--HTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhcccc--CCCHHHHHHHHHHHHH--CCCE----EEEEcCCcHHHHh
Confidence 46678899999988753 2233332 5677778888999999 9997 4666799988743
No 283
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=59.15 E-value=20 Score=30.51 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCC-cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGV-DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~-~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~-~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|. ..+. .+|.+-...-..+.+.++.|.+..+| +.+++...+.-..-+..++|.+.. ..+.+-+
T Consensus 22 ~~ei~~~~~~g~i~GvT----TNPsi~~k~g~~~~~~i~ei~~iv~G~VS~EV~a~d~e~mi~eA~~L~~~~-~nv~IKI 96 (230)
T 1vpx_A 22 LEEIKKGVEWGIVDGVT----TNPTLISKEGAEFKQRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQIS-EYVVIKI 96 (230)
T ss_dssp HHHHHHHHHTTCCCEEE----CCC-----------CHHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHTTC-TTEEEEE
T ss_pred HHHHHHHHhcCCcCCCc----cCHHHHHhcCCCHHHHHHHHHhccCCcEEEEEccCCHHHHHHHHHHHHHhC-CCEEEEe
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
..+++- +++++.+.+ .|+.++++.+|.+.+ .....+.|+..++.|
T Consensus 97 -------------P~T~eG-l~Ai~~L~~--eGI~vNvTliFS~~Q--------A~laa~AGa~~iSpF 141 (230)
T 1vpx_A 97 -------------PMTPDG-IKAVKTLSA--EGIKTNVTLVFSPAQ--------AILAAKAGATYVSPF 141 (230)
T ss_dssp -------------ESSHHH-HHHHHHHHH--TTCCEEEEEECSHHH--------HHHHHHHTCSEEEEB
T ss_pred -------------CCCHHH-HHHHHHHHH--CCCCEEEEEeCCHHH--------HHHHHhCCCeEEEec
No 284
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=59.10 E-value=28 Score=30.41 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=49.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+...+.++.+.+.|++.+++.| |+.+.+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..+++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~a~~~ 94 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVGTTGESPTLS---HEEHKKVIEKVVDVVNGRVQVIAGAGSN-CTEEAIELSVFAEDV 94 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSEEEEECCCS-SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 344567888888899999998865 5555555 466667777766532 246665544322 133 556667788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 95 Gadavlv 101 (289)
T 2yxg_A 95 GADAVLS 101 (289)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 285
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=58.59 E-value=92 Score=27.08 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMAD 271 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~ 271 (328)
|.-.++.+.++|++.+..+.....-.. .-. ...+.++.+...+.+.+--..-.+.+++-+|- +.+.++..++...
T Consensus 26 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt--~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~r 103 (275)
T 1o66_A 26 ESSFAALMDDAGVEMLLVGDSLGMAVQGRKST--LPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAE 103 (275)
T ss_dssp SHHHHHHHHHTTCCEEEECTTHHHHTTCCSSS--TTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHH
Confidence 788899999999999987654433321 111 13578888877777654212223556655543 4677777776666
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++.+.+
T Consensus 104 l~kaGa~aVkl 114 (275)
T 1o66_A 104 LMAAGAHMVKL 114 (275)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHcCCcEEEE
Confidence 66677776654
No 286
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=58.42 E-value=35 Score=28.00 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=46.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--cc-CCCCCCCcHHHHHHHHHHHHHhCCCcE--EEEEeCCCCCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VD-RDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~-~~~l~~~~~~~l~~li~~ik~~~~~~~--i~~~t~~~~~~~e~l~~L~~aG 206 (328)
++....+.++.+.+.|++.+.+.- |. ...+ ..-.++++.+++.. +.. +....++ .++.++.+.++|
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~-----~~g~~~i~~i~~~~-~~~~~v~l~v~d---~~~~i~~~~~~g 84 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDIMDGQFVPNI-----SFGADVVASMRKHS-KLVFDCHLMVVD---PERYVEAFAQAG 84 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----CBCHHHHHHHHTTC-CSEEEEEEESSS---GGGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcc-----ccCHHHHHHHHHhC-CCCEEEEEeecC---HHHHHHHHHHcC
Confidence 445677888888999998765542 33 2111 11246777777764 333 3333332 234569999999
Q ss_pred CcEEeechh
Q 020304 207 LDVFAHNIE 215 (328)
Q Consensus 207 ~~~i~~~~e 215 (328)
++.+.++.+
T Consensus 85 ad~v~vh~~ 93 (220)
T 2fli_A 85 ADIMTIHTE 93 (220)
T ss_dssp CSEEEEEGG
T ss_pred CCEEEEccC
Confidence 999987643
No 287
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=58.34 E-value=5.9 Score=35.13 Aligned_cols=66 Identities=20% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ---KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~---~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++++++.+.|+..|.+..+. ++.+.++++.++.. +|++.+.+ ++++ +++.+..+.++|+|.+.++-
T Consensus 210 ee~~~A~~aGaD~I~ld~~~--------~~~l~~~v~~l~~~~~g~~~v~I~A--SGGI-t~~ni~~~~~~GvD~i~vGs 278 (294)
T 3c2e_A 210 DEATEAIEAGADVIMLDNFK--------GDGLKMCAQSLKNKWNGKKHFLLEC--SGGL-NLDNLEEYLCDDIDIYSTSS 278 (294)
T ss_dssp HHHHHHHHHTCSEEECCC-----------------------------CCEEEE--ECCC-CC------CCCSCSEEECGG
T ss_pred HHHHHHHHcCCCEEEECCCC--------HHHHHHHHHHhcccccCCCCeEEEE--ECCC-CHHHHHHHHHcCCCEEEEec
Confidence 45666666788887763221 35666666666644 24567754 3444 89999999999999998854
No 288
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=58.32 E-value=28 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHH
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLK 266 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~ 266 (328)
....|+++|++.+.+|- .-+|.+. +.+-+.+-+.++.+.+ .|+. .|+-.|||.+++.
T Consensus 79 S~~mL~d~G~~~ViiGH----SERR~~f--~Etd~~v~~Kv~~Al~--~GL~----pI~CvGEtleere 135 (250)
T 2j27_A 79 SLPILKDFGVNWIVLGH----SERRAYY--GETNEIVADKVAAAVA--SGFM----VIACIGETLQERE 135 (250)
T ss_dssp BHHHHHHTTCCEEEESC----HHHHHHS--CCCHHHHHHHHHHHHH--HTCE----EEEEECCCHHHHH
T ss_pred CHHHHHHcCCCEEEECc----hhhhccc--CCCHHHHHHHHHHHHH--CCCE----EEEEeCCCHHHhh
Confidence 46788999999988753 2233333 5677888889999999 9997 3565699988873
No 289
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=58.32 E-value=28 Score=32.41 Aligned_cols=67 Identities=7% Similarity=-0.088 Sum_probs=47.5
Q ss_pred EEEEcCCCHHHHHHH-HHHHHhCCCCEEeeecccC-CCCC-----C----cccCCC-CCHHHHHHHHHHHHhcCCceee
Q 020304 254 IMLGLGESDDDLKEA-MADLRSIDVDILTLGQYLQ-PTPL-----H----LTVKEY-VTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 254 ~ivGlgEt~e~~~~~-l~~l~~l~~~~i~i~~~l~-PTp~-----~----~~~~~~-~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
++-+++-+...+.+. ++.|+++|++.|.+.+... |... + ..+.+. =+.+++.++.+.+++.|++.+.
T Consensus 5 ~~q~F~w~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~Vil 83 (448)
T 1g94_A 5 FVHLFEWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYV 83 (448)
T ss_dssp EEEETTCCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344567778999876 5999999999999876552 2211 1 112222 2678999999999999998764
No 290
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=57.81 E-value=28 Score=29.19 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCC-HHHHHHHHHcCCcEEee
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHSGLDVFAH 212 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~-~e~l~~L~~aG~~~i~~ 212 (328)
+.+.++.+++..-+ .++...+.. .+ +++.+.++++|+....+
T Consensus 17 ~~~~l~~~~~~G~~-~vEl~~~~~-~~~~~~~~~l~~~gl~~~~~ 59 (260)
T 1k77_A 17 FIERFAAARKAGFD-AVEFLFPYN-YSTLQIQKQLEQNHLTLALF 59 (260)
T ss_dssp GGGHHHHHHHHTCS-EEECSCCTT-SCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCC-EEEecCCCC-CCHHHHHHHHHHcCCceEEE
Confidence 34455555555211 233322322 23 45667777778776544
No 291
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=57.74 E-value=23 Score=32.23 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCC-C--CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-CcE
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRD-D--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDV 209 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~-~--l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~ 209 (328)
++..+.++.+.+.|+..+.++++... . .+. ...+..++++.+++.. ++.+. .++.+.+.+.++.+.+.| +|.
T Consensus 246 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ir~~~-~iPVi--~~GgI~s~e~a~~~l~~G~aD~ 321 (363)
T 3l5l_A 246 EESIELARRFKAGGLDLLSVSVGFTIPDTNIPW-GPAFMGPIAERVRREA-KLPVT--SAWGFGTPQLAEAALQANQLDL 321 (363)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCC-CTTTTHHHHHHHHHHH-TCCEE--ECSSTTSHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccccCC-CcchhHHHHHHHHHHc-CCcEE--EeCCCCCHHHHHHHHHCCCccE
Confidence 45567888899999999998865321 0 111 1123456777777764 44543 355555789898888888 999
Q ss_pred Eeec
Q 020304 210 FAHN 213 (328)
Q Consensus 210 i~~~ 213 (328)
+.++
T Consensus 322 V~iG 325 (363)
T 3l5l_A 322 VSVG 325 (363)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 292
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=57.53 E-value=39 Score=31.93 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
.+.++.+.++|++.+.++.. . + .+...++.++.+++..+++.+ ++|-+.|.++. ..+.+.
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~---------~--G-~~~~~~e~i~~i~~~~p~~pv----i~g~~~t~e~a----~~l~~~ 298 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTA---------H--G-HSRRVIETLEMIKADYPDLPV----VAGNVATPEGT----EALIKA 298 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCS---------C--C-SSHHHHHHHHHHHHHCTTSCE----EEEEECSHHHH----HHHHHT
T ss_pred HHHHHHHHHhCCCEEEEEec---------C--C-chHHHHHHHHHHHHHCCCceE----EeCCcCCHHHH----HHHHHc
Confidence 68999999999999887531 1 1 346677888888885557764 44666777765 566689
Q ss_pred CCCEEeee
Q 020304 276 DVDILTLG 283 (328)
Q Consensus 276 ~~~~i~i~ 283 (328)
|++.+.+.
T Consensus 299 G~d~I~v~ 306 (494)
T 1vrd_A 299 GADAVKVG 306 (494)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEc
Confidence 99998873
No 293
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=57.49 E-value=9.8 Score=33.47 Aligned_cols=76 Identities=9% Similarity=-0.016 Sum_probs=51.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+...+ +.+.+.. .-+. +..+..+++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~eEr~~v~~~~~~~~~g--ViaGvg~-~~t~~ai~la~~A~~~ 90 (288)
T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALS---KDEKRQNLNALYDVTHK--LIFQVGS-LNLNDVMELVKFSNEM 90 (288)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSC---HHHHHHHHHHHTTTCSC--EEEECCC-SCHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCC--eEEeeCC-CCHHHHHHHHHHHHhc
Confidence 3445567888888999999998865 4555555 46777888888776555 4333322 1133 556667778
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 91 Gadavlv 97 (288)
T 2nuw_A 91 DILGVSS 97 (288)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 9998876
No 294
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=57.12 E-value=73 Score=28.33 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=91.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCC--CcHH-HHHHHHHHH-HHhCCCcEEEEE--e---CCC---CCCH----
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSG-HFARTVKAM-KKQKPDIMVECL--T---SDF---RGDL---- 196 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~--~~~~-~l~~li~~i-k~~~~~~~i~~~--t---~~~---~~~~---- 196 (328)
.++..+.++.+.+.|++.|= .. +.|.. +..+ .+-+.++.. .....++.+..= . ++. ..++
T Consensus 42 ~~~~~~~l~~Al~~Gi~~~D--TA--~~Yg~~~G~sE~~lG~al~~~~~~~R~~~~I~TK~g~~~~~~~~~~~~s~~~i~ 117 (346)
T 3n6q_A 42 LESQRAILRKAFDLGITHFD--LA--NNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLL 117 (346)
T ss_dssp HHHHHHHHHHHHHTTCCEEE--CC--TTCTTTTTHHHHHHHHHHHHHCTTTGGGCEEEEEECSCCSSSTTSSSSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEE--Cc--cccCCCCCcHHHHHHHHHHhhcccccccEEEEEEecccCCCCCCCCCCCHHHHH
Confidence 35567888888999998553 11 23542 2222 334444431 000123444321 1 110 0122
Q ss_pred -HHHHHHHHcCCcEEe----echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHH
Q 020304 197 -RAVETLVHSGLDVFA----HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMA 270 (328)
Q Consensus 197 -e~l~~L~~aG~~~i~----~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~ 270 (328)
.+-+.|++.|+|.+= |..+ +....++.+++++.+++ .|.- =-+|+ ..+.+++.+.+.
T Consensus 118 ~~~e~SL~rL~~dyiDl~~lH~p~-----------~~~~~~e~~~al~~l~~--~Gki----r~iGvSn~~~~~l~~~~~ 180 (346)
T 3n6q_A 118 ASLDQSLKRMGLEYVDIFYSHRVD-----------ENTPMEETASALAHAVQ--SGKA----LYVGISSYSPERTQKMVE 180 (346)
T ss_dssp HHHHHHHHHHTCSCEEEEEECSCC-----------TTSCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEeEEEEeCCC-----------CCCCHHHHHHHHHHHHH--cCCe----eEEEeCCCCHHHHHHHHH
Confidence 334456667766543 2221 13457899999999999 8974 25677 788899988888
Q ss_pred HHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 271 DLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 271 ~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
.+...+...+.+ +.- -+++. ...+...+...+.+.|+..++.+|+.+
T Consensus 181 ~~~~~~~~~~~~-Q~~-~~l~~-------~~~~~~~l~~~~~~~gi~v~a~spL~~ 227 (346)
T 3n6q_A 181 LLREWKIPLLIH-QPS-YNLLN-------RWVDKSGLLDTLQNNGVGCIAFTPLAQ 227 (346)
T ss_dssp HHHTTTCCCCEE-ECB-CBTTB-------CHHHHTTHHHHHHHHTCEEEEBSTTGG
T ss_pred HHHHcCCCeEEE-ecc-Cchhh-------cCcchhhHHHHHHHcCCeEEEeccccC
Confidence 887766442222 110 02221 011112578899999999999999875
No 295
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=57.05 E-value=9.8 Score=33.55 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=50.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHH---HHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLR---AVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e---~l~~L~~a 205 (328)
.+.+...+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+...+ +.+.+.. .-+.+ ..+..+++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~eEr~~v~~~~~~~~~g--viaGvg~-~~t~~ai~la~~A~~~ 90 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLS---PEEKLENLKAVYDVTNK--IIFQVGG-LNLDDAIRLAKLSKDF 90 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHTTCSC--EEEECCC-SCHHHHHHHHHHGGGS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHcCC--EEEecCC-CCHHHHHHHHHHHHhc
Confidence 3444567888888999999998865 4554555 47777888888876555 4333322 22344 45555667
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 91 Gadavlv 97 (293)
T 1w3i_A 91 DIVGIAS 97 (293)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 296
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=57.01 E-value=18 Score=31.82 Aligned_cols=78 Identities=10% Similarity=-0.091 Sum_probs=51.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+...+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+... .+.+.+.+... -+. +..+...+
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~A~~ 96 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVG---SRERQAILSSFIAAGIAPSRIVTGVLVD-SIEDAADQSAEALN 96 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC---HHHHHHHHHHHHHTTCCGGGEEEEECCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCc-cHHHHHHHHHHHHh
Confidence 3445567888889999999998865 4554555 4677788888776543 35554433322 133 56667778
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 97 ~Gadavlv 104 (294)
T 3b4u_A 97 AGARNILL 104 (294)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999876
No 297
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=56.94 E-value=70 Score=28.81 Aligned_cols=149 Identities=11% Similarity=0.010 Sum_probs=83.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~L~~aG 206 (328)
++++..+.++.+.+.|++.+-+-.|.. +.+...+.++.+++.. +++.+.+-.|... +. +.++.|.+.|
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~------~~~~~~e~v~avr~a~G~d~~l~vDan~~~-~~~~a~~~~~~l~~~~ 218 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP------DLKEDVDRVSALREHLGDSFPLMVDANMKW-TVDGAIRAARALAPFD 218 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------SHHHHHHHHHHHHHHHCTTSCEEEECTTCS-CHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC------CHHHHHHHHHHHHHHhCCCCeEEEECCCCC-CHHHHHHHHHHHHhcC
Confidence 456677788888889999887765542 2466778899988854 5666544334332 42 4566777777
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
++.+-=- +. ..+++ .++.+++. .++++. . +|+..+..+..+.+++-.++.+.+-
T Consensus 219 i~~iEqP----------~~--~~d~~----~~~~l~~~-~~iPI~----~--dE~~~~~~~~~~~i~~~~~d~v~ik--- 272 (371)
T 2ovl_A 219 LHWIEEP----------TI--PDDLV----GNARIVRE-SGHTIA----G--GENLHTLYDFHNAVRAGSLTLPEPD--- 272 (371)
T ss_dssp CSEEECC----------SC--TTCHH----HHHHHHHH-HCSCEE----E--CTTCCSHHHHHHHHHHTCCSEECCC---
T ss_pred CCEEECC----------CC--cccHH----HHHHHHhh-CCCCEE----e--CCCCCCHHHHHHHHHcCCCCEEeeC---
Confidence 7755210 11 12333 33333331 344432 2 3433333344455555567765552
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
++.. + ...+..++.++|++.|+..+--
T Consensus 273 -~~~~-----G--Gi~~~~~i~~~A~~~gi~~~~h 299 (371)
T 2ovl_A 273 -VSNI-----G--GYTTFRKVAALAEANNMLLTSH 299 (371)
T ss_dssp -TTTT-----T--SHHHHHHHHHHHHHTTCCEEEC
T ss_pred -cccc-----C--CHHHHHHHHHHHHHcCCeEccc
Confidence 2221 1 2445677788888999886653
No 298
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=56.94 E-value=76 Score=25.62 Aligned_cols=72 Identities=24% Similarity=0.164 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEE--EEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE--CLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~--~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++..+.++.+.. |+..+.+.-+. + ...-.++++.+++.+|+..+. ....+ ..+..++.+.++|.|.+.
T Consensus 13 ~~~~~~~~~~~~-~v~~iev~~~~---~----~~~g~~~i~~l~~~~~~~~i~~~l~~~d--i~~~~~~~a~~~Gad~v~ 82 (207)
T 3ajx_A 13 EAALELAGKVAE-YVDIIELGTPL---I----KAEGLSVITAVKKAHPDKIVFADMKTMD--AGELEADIAFKAGADLVT 82 (207)
T ss_dssp HHHHHHHHHHGG-GCSEEEECHHH---H----HHHCTHHHHHHHHHSTTSEEEEEEEECS--CHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhhc-cCCEEEECcHH---H----HhhCHHHHHHHHHhCCCCeEEEEEEecC--ccHHHHHHHHhCCCCEEE
Confidence 445666666666 77877763221 1 122245778888876565543 23322 123458999999999998
Q ss_pred echh
Q 020304 212 HNIE 215 (328)
Q Consensus 212 ~~~e 215 (328)
++.+
T Consensus 83 vh~~ 86 (207)
T 3ajx_A 83 VLGS 86 (207)
T ss_dssp EETT
T ss_pred Eecc
Confidence 6543
No 299
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=56.73 E-value=30 Score=29.24 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=66.3
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHH----HHHHHHHHHHHhCCCcE-EEEEe-CCCCCCHHHHHHHHHcCCcEEe
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSG----HFARTVKAMKKQKPDIM-VECLT-SDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~----~l~~li~~ik~~~~~~~-i~~~t-~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+.++++.+.| .+|..-+-.++.+.....+ .+.+..+.|++.. +.. ...+. |.+..++..++.++++|...+.
T Consensus 86 ~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~-G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 86 QLIKRMSDEG-HIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKIT-GKQDNLYLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp HHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHH-SCCCCCEECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred HHHHHHHHCc-CChhcCCccccccccCCHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 4566677777 3455444443333221122 2333333344431 222 22222 3233467888888888877665
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc---CCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL---GESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl---gEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
.++++.+-... ...+.+...+.+..-.+ +|- +|+-+ ..|.+.+.+.+..+++-|..++++...
T Consensus 164 w~~d~~Dw~~~----~~~~~~~~~~~v~~~~~--~g~-----Iil~Hd~~~~t~~aL~~ii~~l~~~Gy~fvtl~el 229 (240)
T 1ny1_A 164 WSVAFVDWKIN----NQKGKKYAYDHMIKQAH--PGA-----IYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDL 229 (240)
T ss_dssp CSBCCSCCCGG----GCCCHHHHHHHHHHTCC--TTE-----EEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHH
T ss_pred CcccccccCCc----CCCCHHHHHHHHHhCCC--CCe-----EEEEcCCChhHHHHHHHHHHHHHHCCCEEEEhHHh
Confidence 55544321111 01234544444332212 442 33333 246777888888888888777766433
No 300
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=56.61 E-value=19 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|+..|.+.. .. ++.+.++++.+. +.+.+.+ ++++ +++.+..++++|+|.+.++-
T Consensus 218 lee~~eA~~aGaD~I~ld~-----~~---~e~l~~~v~~~~---~~~~I~A--SGGI-t~~~i~~~a~~GvD~isvGs 281 (296)
T 1qap_A 218 LDELDDALKAGADIIMLDN-----FN---TDQMREAVKRVN---GQARLEV--SGNV-TAETLREFAETGVDFISVGA 281 (296)
T ss_dssp HHHHHHHHHTTCSEEEESS-----CC---HHHHHHHHHTTC---TTCCEEE--CCCS-CHHHHHHHHHTTCSEEECSH
T ss_pred HHHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhC---CCCeEEE--ECCC-CHHHHHHHHHcCCCEEEEeH
Confidence 3667777788988887732 22 466666665433 2455654 4554 99999999999999998864
No 301
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=56.47 E-value=60 Score=30.71 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=48.3
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
+.+.++.|.++|++.+.++.. . + .....++.++.+++.++++.+ +.|..-|.++ ++.+.+
T Consensus 230 ~~~~a~~l~~aG~d~I~id~a---------~--g-~~~~~~~~v~~i~~~~p~~~V----i~g~v~t~e~----a~~l~~ 289 (490)
T 4avf_A 230 TGERVAALVAAGVDVVVVDTA---------H--G-HSKGVIERVRWVKQTFPDVQV----IGGNIATAEA----AKALAE 289 (490)
T ss_dssp HHHHHHHHHHTTCSEEEEECS---------C--C-SBHHHHHHHHHHHHHCTTSEE----EEEEECSHHH----HHHHHH
T ss_pred hHHHHHHHhhcccceEEeccc---------C--C-cchhHHHHHHHHHHHCCCceE----EEeeeCcHHH----HHHHHH
Confidence 468999999999999887631 0 2 236677888888886556653 3454456554 566788
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
.|++.+.+
T Consensus 290 aGaD~I~v 297 (490)
T 4avf_A 290 AGADAVKV 297 (490)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999887
No 302
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=56.44 E-value=22 Score=31.18 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+...++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~A~~~ 94 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGTTGESPTLT---FEEHEKVIEFAVKRAAGRIKVIAGTGGN-ATHEAVHLTAHAKEV 94 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSEEEEECCCS-CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHhc
Confidence 344567888888899999998865 4554555 456667777766532 246665544322 234 456667788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 95 Gadavlv 101 (294)
T 2ehh_A 95 GADGALV 101 (294)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 303
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.96 E-value=89 Score=26.06 Aligned_cols=76 Identities=7% Similarity=-0.007 Sum_probs=46.5
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCC--------CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC--CCC--HHHHHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDD--------IPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--RGD--LRAVETL 202 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~--------l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~--~~~--~e~l~~L 202 (328)
.+.+.++.+++.|++.|-+....+.. ......+.+.++-+.+++. ++.+....+.. ... +..++..
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~~~~~~i~~A 100 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASK--GIKIVGTGVYVAEKSSDWEKMFKFA 100 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHT--TCEEEEEEEECCSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHc--CCeEEEEeccCCccHHHHHHHHHHH
Confidence 46778888899999988776432100 0011135666666666666 66665433221 112 5678888
Q ss_pred HHcCCcEEee
Q 020304 203 VHSGLDVFAH 212 (328)
Q Consensus 203 ~~aG~~~i~~ 212 (328)
++.|+..+.+
T Consensus 101 ~~lGa~~v~~ 110 (262)
T 3p6l_A 101 KAMDLEFITC 110 (262)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 8889888776
No 304
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=55.66 E-value=37 Score=29.06 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C-----CCHHHHHHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G-----ESDDDLKEAM 269 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g-----Et~e~~~~~l 269 (328)
++.++.++++|++.+-+.. . . . +.++ .-+.+.+ .|+.+.+...-++ . +..+.+.+.+
T Consensus 34 ~~~l~~~~~~G~~~vEl~~-------~--~--~-~~~~---~~~~l~~--~gl~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (301)
T 3cny_A 34 QQLLSDIVVAGFQGTEVGG-------F--F--P-GPEK---LNYELKL--RNLEIAGQWFSSYIIRDGIEKASEAFEKHC 96 (301)
T ss_dssp HHHHHHHHHHTCCEECCCT-------T--C--C-CHHH---HHHHHHH--TTCEECEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEecC-------C--C--C-CHHH---HHHHHHH--CCCeEEEEeccCCCChhhHHHHHHHHHHHH
Confidence 5678888888888776641 0 1 1 2333 3334456 7887554422122 1 1235566777
Q ss_pred HHHHhCCCCEEeee
Q 020304 270 ADLRSIDVDILTLG 283 (328)
Q Consensus 270 ~~l~~l~~~~i~i~ 283 (328)
+.+.++|+..+.+.
T Consensus 97 ~~a~~lG~~~v~~~ 110 (301)
T 3cny_A 97 QYLKAINAPVAVVS 110 (301)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHcCCCEEEec
Confidence 77888888877664
No 305
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=55.55 E-value=31 Score=31.06 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEec-cCCC--CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-C
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSV-DRDD--IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-L 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg-~~~~--l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~ 207 (328)
+.++..+.++.+.+.|+..+.+..| ..+. .+. ...+..++++.+++.. ++.+. .++.+.+.+.++.+.+.| +
T Consensus 237 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ir~~~-~iPVi--~~Ggi~t~e~a~~~l~~G~a 312 (349)
T 3hgj_A 237 SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPL-APGFQVPFADAVRKRV-GLRTG--AVGLITTPEQAETLLQAGSA 312 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCC-CTTTTHHHHHHHHHHH-CCEEE--ECSSCCCHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCC-CccccHHHHHHHHHHc-CceEE--EECCCCCHHHHHHHHHCCCc
Confidence 3456678888999999999988743 2111 110 1123456777888763 45553 355555888888888888 9
Q ss_pred cEEeec
Q 020304 208 DVFAHN 213 (328)
Q Consensus 208 ~~i~~~ 213 (328)
|.+.++
T Consensus 313 D~V~iG 318 (349)
T 3hgj_A 313 DLVLLG 318 (349)
T ss_dssp SEEEES
T ss_pred eEEEec
Confidence 999874
No 306
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=55.32 E-value=21 Score=31.29 Aligned_cols=78 Identities=13% Similarity=-0.017 Sum_probs=50.2
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+...+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pvi~Gvg~~-~t~~ai~la~~a~~ 94 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMT---ETERKETIKFVIDKVNKRIPVIAGTGSN-NTAASIAMSKWAES 94 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCcc-cHHHHHHHHHHHHh
Confidence 4445567888888999999998865 5555565 456666777665532 235554433321 133 55667788
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 95 ~Gadavlv 102 (291)
T 3a5f_A 95 IGVDGLLV 102 (291)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 307
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=55.18 E-value=98 Score=26.31 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCC---CH----HHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG---DL----RAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~---~~----e~l~~L~~ 204 (328)
+.+++.+.++++.+.|+..+++. | .++...-+.++. .++.+.... ++.+ +. ...+...+
T Consensus 41 t~~~i~~lc~eA~~~~~~aVcV~----p-------~~v~~a~~~L~~--s~v~v~tVi-gFP~G~~~~~~Kv~Ea~~Ai~ 106 (239)
T 3ngj_A 41 TEEQIRKLCSEAAEYKFASVCVN----P-------TWVPLCAELLKG--TGVKVCTVI-GFPLGATPSEVKAYETKVAVE 106 (239)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEC----G-------GGHHHHHHHHTT--SSCEEEEEE-STTTCCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcEEEEC----H-------HHHHHHHHHhCC--CCCeEEEEe-ccCCCCCchHHHHHHHHHHHH
Confidence 45678888889999999999873 1 122222233332 356665433 3322 21 24455556
Q ss_pred cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 205 SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 205 aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.|.+.+-+-+... .+. ..+++.+++-++.+++...+..+. +|+=- --|.+++....+...+.|+|++-.+
T Consensus 107 ~GAdEIDmViNig-~lk------~g~~~~v~~eI~~v~~a~~~~~lK--VIlEt~~Lt~eei~~a~~ia~~aGADfVKTS 177 (239)
T 3ngj_A 107 QGAEEVDMVINIG-MVK------AKKYDDVEKDVKAVVDASGKALTK--VIIECCYLTNEEKVEVCKRCVAAGAEYVKTS 177 (239)
T ss_dssp TTCSEEEEECCHH-HHH------TTCHHHHHHHHHHHHHHHTTSEEE--EECCGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred cCCCEEEEEeehH-Hhc------cccHHHHHHHHHHHHHHhcCCceE--EEEecCCCCHHHHHHHHHHHHHHCcCEEECC
Confidence 7999887644332 111 346777777777777644454333 35422 2478899999999999999988763
Q ss_pred cccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 284 QYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 284 ~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
|.+. ....+.+..+.+++.. .-.+..-++|
T Consensus 178 -----TGf~---~ggAt~~dv~lmr~~v-g~~v~VKasG 207 (239)
T 3ngj_A 178 -----TGFG---THGATPEDVKLMKDTV-GDKALVKAAG 207 (239)
T ss_dssp -----CSSS---SCCCCHHHHHHHHHHH-GGGSEEEEES
T ss_pred -----CCCC---CCCCCHHHHHHHHHhh-CCCceEEEeC
Confidence 3321 2234555555555543 2234444443
No 308
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=55.04 E-value=64 Score=26.77 Aligned_cols=123 Identities=12% Similarity=0.185 Sum_probs=72.0
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE--ee-
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF--AH- 212 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i--~~- 212 (328)
..+.++.+.+.|++.+.+...... .++ -..+.++++.+++.+++..+.... .+.+.+..+.++|+|.+ .+
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~-~~~--~~~~~~~i~~i~~~~~~~~v~~~~----~t~~ea~~a~~~Gad~i~~~v~ 162 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVIAMDCTKRD-RHD--GLDIASFIRQVKEKYPNQLLMADI----STFDEGLVAHQAGIDFVGTTLS 162 (234)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSC-CTT--CCCHHHHHHHHHHHCTTCEEEEEC----SSHHHHHHHHHTTCSEEECTTT
T ss_pred hHHHHHHHHHcCCCEEEEcccccC-CCC--CccHHHHHHHHHHhCCCCeEEEeC----CCHHHHHHHHHcCCCEEeeecc
Confidence 467788889999998877543321 110 024678899998887776654321 26677888899999998 22
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCC-HHHHHHHHHHHHhCCCCEEeeec
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-DDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt-~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+.... . +... ..+ ++.++.+++ .+++ ++..=|=+ .+++.+. .+.|++.+.+..
T Consensus 163 g~~~~--~-~~~~--~~~----~~~i~~~~~--~~ip----via~GGI~s~~~~~~~----~~~Gad~v~vGs 216 (234)
T 1yxy_A 163 GYTPY--S-RQEA--GPD----VALIEALCK--AGIA----VIAEGKIHSPEEAKKI----NDLGVAGIVVGG 216 (234)
T ss_dssp TSSTT--S-CCSS--SCC----HHHHHHHHH--TTCC----EEEESCCCSHHHHHHH----HTTCCSEEEECH
T ss_pred ccCCC--C-cCCC--CCC----HHHHHHHHh--CCCC----EEEECCCCCHHHHHHH----HHCCCCEEEEch
Confidence 32110 0 1011 223 355566666 4544 23322444 7766554 456999887754
No 309
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=54.92 E-value=21 Score=31.91 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCC-CCC-------CcHHHHHHHHHHHHHhCCCcEEEE
Q 020304 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPD-------GGSGHFARTVKAMKKQKPDIMVEC 187 (328)
Q Consensus 126 ~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~-------~~~~~l~~li~~ik~~~~~~~i~~ 187 (328)
.+..+.+.+.+.++++++.+.|++.|.+.|..+.. ..| .+-.-+.+.++.||+.+|++.+.+
T Consensus 61 PGv~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~Vit 130 (342)
T 1h7n_A 61 PNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIIC 130 (342)
T ss_dssp TTCEEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEE
T ss_pred CCceeeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEE
Confidence 33344566788999999999999999998764321 121 012467888999999999977643
No 310
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=54.88 E-value=97 Score=26.19 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=71.6
Q ss_pred EEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE-------------
Q 020304 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT------------- 250 (328)
Q Consensus 184 ~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v------------- 250 (328)
.+...-|+.-.+.+.++.|.++|.|.+-++.. .+.+.++.++.++.+++ ..+++
T Consensus 11 ~it~gDP~~~~t~~~~~~l~~~GaD~IelG~S-----------~g~t~~~~~~~v~~ir~--~~~Pivl~~y~~n~i~~g 77 (234)
T 2f6u_A 11 HITKLDPDRTNTDEIIKAVADSGTDAVMISGT-----------QNVTYEKARTLIEKVSQ--YGLPIVVEPSDPSNVVYD 77 (234)
T ss_dssp EEEEECTTSCCCHHHHHHHHTTTCSEEEECCC-----------TTCCHHHHHHHHHHHTT--SCCCEEECCSSCCCCCCC
T ss_pred EEEeeCCCccccHHHHHHHHHcCCCEEEECCC-----------CCCCHHHHHHHHHHhcC--CCCCEEEecCCcchhhcC
Confidence 34444455445788999999999999988771 25678888888888887 44331
Q ss_pred -EEeEEEEc-CCCHHHHH-----HHHHHH----HhCC-----CCEEeeeccc--CCCCCC--c-ccCCCCCHHHHHHHHH
Q 020304 251 -KSSIMLGL-GESDDDLK-----EAMADL----RSID-----VDILTLGQYL--QPTPLH--L-TVKEYVTPEKFDFWKA 309 (328)
Q Consensus 251 -~~~~ivGl-gEt~e~~~-----~~l~~l----~~l~-----~~~i~i~~~l--~PTp~~--~-~~~~~~~~~~~~~l~~ 309 (328)
..-++.-+ .+..+++. +.+..+ ++.| .+.++.. |+ .|+... . +.....+++....+.+
T Consensus 78 vDg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~g-Yil~~P~~~~~rl~~g~~~~~~e~~~~~a~ 156 (234)
T 2f6u_A 78 VDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEG-YIVLNPDSAVARVTKALCNIDKELAASYAL 156 (234)
T ss_dssp SSEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEE-EEECCTTSHHHHHTTBCCCCCHHHHHHHHH
T ss_pred CCEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecc-eEEECCCCceEEeecCCCCCCHHHHHHHHH
Confidence 11233344 44445554 444322 5566 7777752 33 453210 0 1122235677777777
Q ss_pred HHH-hc--CCceeee
Q 020304 310 YGE-SI--GFRYVAS 321 (328)
Q Consensus 310 ~~~-~~--G~~~~~~ 321 (328)
.+. -+ ||-|..+
T Consensus 157 ~g~~~l~~~~Vyl~~ 171 (234)
T 2f6u_A 157 VGEKLFNLPIIYIEY 171 (234)
T ss_dssp HHHHTTCCSEEEEEC
T ss_pred hhhhhcCCCEEEEeC
Confidence 776 34 5555443
No 311
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=54.84 E-value=19 Score=31.90 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=43.3
Q ss_pred CCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCC-------cHHHHHHHHHHHHHhCCCcEEE
Q 020304 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 126 ~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~-------~~~~l~~li~~ik~~~~~~~i~ 186 (328)
.+..+.+.+.+.++++++.+.|++.|.+.|.. . ..|. +-.-+.+.++.||+.+|++.+.
T Consensus 50 PGv~r~sid~l~~~~~~~~~lGi~~v~LFgvp-~-~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vi 115 (323)
T 1l6s_A 50 PGVMRIPEKHLAREIERIANAGIRSVMTFGIS-H-HTDETGSDAWREDGLVARMSRICKQTVPEMIVM 115 (323)
T ss_dssp TTCEEEEGGGHHHHHHHHHHHTCCEEEEEEEC-S-SCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEE
T ss_pred CCceeeCHHHHHHHHHHHHHCCCCEEEEeCCC-C-CCCccccccCCCCCcHHHHHHHHHHHCCCeEEE
Confidence 33344566788999999999999999988762 1 1210 1246788899999999997764
No 312
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=54.67 E-value=89 Score=25.70 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeE
Q 020304 171 RTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 171 ~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v 250 (328)
++++.+++.+++..+-.-..........++.++++|++.+.+.. ....+...++++.+++ .|+.
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~-------------~~~~~~~~~~~~~~~~--~g~~- 111 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSA-------------AAHIATIAACKKVADE--LNGE- 111 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEET-------------TSCHHHHHHHHHHHHH--HTCE-
T ss_pred HHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEec-------------CCCHHHHHHHHHHHHH--hCCc-
Q ss_pred EEeE-EEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 251 KSSI-MLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 251 ~~~~-ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
..+ ++|. .|.++..+.... |++.+.+
T Consensus 112 -~~~d~l~~-~T~~~~~~~~~~----g~d~v~~ 138 (218)
T 3jr2_A 112 -IQIEIYGN-WTMQDAKAWVDL----GITQAIY 138 (218)
T ss_dssp -EEEECCSS-CCHHHHHHHHHT----TCCEEEE
T ss_pred -cceeeeec-CCHHHHHHHHHc----Cccceee
No 313
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=54.66 E-value=26 Score=31.48 Aligned_cols=77 Identities=9% Similarity=-0.065 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+...++
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~eEr~~vi~~~ve~~~grvpViaGvg~~-st~eai~la~~A~~~ 128 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMYLT---REERRRAIEAAATILRGRRTLMAGIGAL-RTDEAVALAKDAEAA 128 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSEEEEEECCS-SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHhc
Confidence 344567888888899999998865 5554555 466667777766542 246665544322 133 556677788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 129 Gadavlv 135 (332)
T 2r8w_A 129 GADALLL 135 (332)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999875
No 314
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=54.35 E-value=1.2e+02 Score=26.99 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCcEEeechh---hHHHHH-hh---hc-CCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEE---c-CC
Q 020304 197 RAVETLVHSGLDVFAHNIE---TVKRLQ-RI---VR-DPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLG---L-GE 260 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~e---t~~~~~-~~---~~-~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivG---l-gE 260 (328)
+.++.++++|+|.+-++.- .++.+. .. .. .-+.+.+. .++.++.+++.. ++.+..-+=.. . |.
T Consensus 148 ~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~~g~ 226 (338)
T 1z41_A 148 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTDKGL 226 (338)
T ss_dssp HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCSTTSC
T ss_pred HHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCCCCC
Confidence 3466778899999876432 122211 10 00 01223433 466777776643 55544433221 1 56
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeec
Q 020304 261 SDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+.++..+.++.+.+.|++.+.+..
T Consensus 227 ~~~~~~~~a~~l~~~Gvd~i~v~~ 250 (338)
T 1z41_A 227 DIADHIGFAKWMKEQGVDLIDCSS 250 (338)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 889999999999999999999853
No 315
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=54.31 E-value=23 Score=34.33 Aligned_cols=62 Identities=10% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCCC------cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLH------LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~------~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+...+.+.++.|+++|++.|.+.+... |.... ..+.+ .=+++++.++.+.+++.|++.+.
T Consensus 168 ~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~Vil 237 (583)
T 1ea9_C 168 GGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLL 237 (583)
T ss_dssp CCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEE
T ss_pred CcCHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45788888889999999999988865542 21110 11222 23689999999999999999864
No 316
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=54.13 E-value=96 Score=26.00 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHH-HHHHHHHh
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLE-VLKHAKLS 244 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~-~i~~~~~~ 244 (328)
.+.+.+.++.+++. |+.+.. .++-.....+..|....+|.+-++..-...+.. .......++ .+..+++
T Consensus 138 ~~~~~~~l~~l~~~--G~~ial--DdfG~g~ssl~~L~~l~~d~iKiD~~~v~~~~~-----~~~~~~~~~~i~~~a~~- 207 (259)
T 3s83_A 138 PERAAVILKTLRDA--GAGLAL--DDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMGN-----NAGSAKIVRSVVKLGQD- 207 (259)
T ss_dssp HHHHHHHHHHHHHH--TCEEEE--ECC---CHHHHHHHHSCCCEEEECHHHHHHTTT-----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHC--CCEEEE--ECCCCCchhHHHHHhCCCCEEEECHHHHhhhhc-----CchHHHHHHHHHHHHHH-
Confidence 46788889999988 677654 233224577889999999999987544433321 112233344 4556677
Q ss_pred CCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 245 ~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.|+.+ +.---||.++ ++.++++|++.+.=+
T Consensus 208 -~g~~v----iaeGVEt~~~----~~~l~~lG~~~~QG~ 237 (259)
T 3s83_A 208 -LDLEV----VAEGVENAEM----AHALQSLGCDYGQGF 237 (259)
T ss_dssp -TTCEE----EECCCCSHHH----HHHHHHHTCCEECBT
T ss_pred -CCCeE----EEEeCCCHHH----HHHHHhcCCCEeecC
Confidence 88874 3322477665 567889999987653
No 317
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=54.10 E-value=26 Score=30.00 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=75.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHH----HHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHHHHHHHHcCCcEEe
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSG----HFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~----~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
.+.++++.+.| .+|..-+-..+.+.....+ .+.+.-+.|++.. +.....+. |.+..++..++.++++|...+.
T Consensus 88 p~~lr~i~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~-G~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 165 (254)
T 2iw0_A 88 PDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRID-GFAPKYMRAPYLSCDAGCQGDLGGLGYHIID 165 (254)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHH-SCEESEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHCC-CEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHh-CCCCCEEECCCCCCCHHHHHHHHHcCCeEEE
Confidence 36788888888 4565555444433322222 3333334444432 44444343 3344589999999999998776
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEc-C--CCHHH-HHHHHHHHHhCCCCEEeeeccc
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGL-G--ESDDD-LKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGl-g--Et~e~-~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.++++.+-... ........++.++.+.+ ... -...+++-+ + .|.+. +...+..+++.|..++++...+
T Consensus 166 w~~d~~Dw~~~----~~~~i~~~~~~~~~~~~---~~~~~~g~IiL~Hd~~~~t~~~~l~~ii~~lk~~Gy~fvtl~ell 238 (254)
T 2iw0_A 166 TNLDTKDYENN----KPETTHLSAEKFNNELS---ADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECL 238 (254)
T ss_dssp CSEECCTTTSC----STTTHHHHHHHHHHHSC---SCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHT
T ss_pred eCCCCcccCcC----ChHHHHHHHHHHHHHHh---hcCCCCCEEEEEcCCCcccHHHHHHHHHHHHHHCCCEEEEHHHhh
Confidence 66665442111 11222233333333211 110 012244444 3 24443 5678999999999988886565
No 318
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=53.96 E-value=76 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=40.2
Q ss_pred CcEEEEEeccCCCCCC-CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 148 VDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~~-~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++.+.+.+.++. +.. ...+...+-++.+++..+++.+.+ .+++ +++.+..+.++|.|.+-.|
T Consensus 135 ~D~Vl~msv~pG-f~Gq~f~~~~l~ki~~lr~~~~~~~I~V--dGGI-~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 135 IDMALVMTVEPG-FGGQKFMEDMMPKVHWLRTQFPSLDIEV--DGGV-GPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp CSEEEEESSCTT-TCSCCCCGGGHHHHHHHHHHCTTCEEEE--ESSC-STTTHHHHHHHTCCEEEES
T ss_pred CCeEEEeeecCC-CCCcccCHHHHHHHHHHHHhcCCCCEEE--eCCc-CHHHHHHHHHcCCCEEEEe
Confidence 566766555432 211 112344555778888766666654 3443 7899999999999998876
No 319
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=53.74 E-value=1e+02 Score=27.00 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=59.8
Q ss_pred ceeeEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCch---HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHH
Q 020304 100 GIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEP---ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (328)
Q Consensus 100 ~~~~~~~i~~t~gC~~~C~FC~~~~~~~~~~~~~~ei---~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~i 176 (328)
.+...+|+.+.+|- +.+.... .......++ ..-+++....|.+-+.+-++.. . .-.++++.+
T Consensus 156 e~ip~gYL~v~~g~------k~V~fv~-~~~~~~~e~A~~~aYa~~gad~G~~lV~LD~~~~--~------v~~e~V~~I 220 (286)
T 3vk5_A 156 ELLLTVALTFGEDP------RTGDLLG-TVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNE--H------VPPEVVRHF 220 (286)
T ss_dssp EEEEEEEEECSCCH------HHHHHHC-BCCCCCSSSHHHHHHHHHHHHTTCSEEEEECSSS--C------CCHHHHHHH
T ss_pred CcceEEEEEECCCC------ceeeeeC-CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCC--c------CCHHHHHHH
Confidence 45567777765552 3332211 112212243 4566666778888777764332 1 124677777
Q ss_pred HHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 177 KKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 177 k~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
++... ++.+.+ .+++.+.|.++.+.++|.|.+.+|-
T Consensus 221 ~~~~~~~iPV~v--GGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 221 RKGLGPDQVLFV--SGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp HHHSCTTCEEEE--ESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred HHhcCCCCCEEE--EeCCCCHHHHHHHHHcCCCEEEECc
Confidence 77643 566644 4566689999999999999999853
No 320
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=53.42 E-value=74 Score=28.52 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=81.4
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHH----HHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLR----AVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e----~l~~L~~aG 206 (328)
++++..+.++++.+.|++.+-+--|.. .+.-.+.++++++.. +++.+.+-.|... +.+ .++.|.+.|
T Consensus 139 ~~~~~~~~a~~~~~~G~~~~K~K~g~~-------~~~d~~~v~avR~a~g~~~~l~vDan~~~-~~~~a~~~~~~L~~~~ 210 (354)
T 3jva_A 139 EPNVMAQKAVEKVKLGFDTLKIKVGTG-------IEADIARVKAIREAVGFDIKLRLDANQAW-TPKDAVKAIQALADYQ 210 (354)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSC-------HHHHHHHHHHHHHHHCTTSEEEEECTTCS-CHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCCC-------HHHHHHHHHHHHHHcCCCCeEEEECCCCC-CHHHHHHHHHHHHhcC
Confidence 456777888888899999988753332 245567888888854 6777655445433 533 344555555
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+..+- .-+. ..++ +.++.+++. .++++. .+|+..+..+..+.++.-.++.+.+-
T Consensus 211 i~~iE----------qP~~--~~d~----~~~~~l~~~-~~iPIa------~dE~~~~~~~~~~~l~~~~~d~v~~k--- 264 (354)
T 3jva_A 211 IELVE----------QPVK--RRDL----EGLKYVTSQ-VNTTIM------ADESCFDAQDALELVKKGTVDVINIK--- 264 (354)
T ss_dssp EEEEE----------CCSC--TTCH----HHHHHHHHH-CSSEEE------ESTTCCSHHHHHHHHHHTCCSEEEEC---
T ss_pred CCEEE----------CCCC--hhhH----HHHHHHHHh-CCCCEE------EcCCcCCHHHHHHHHHcCCCCEEEEC---
Confidence 44432 1011 1233 233333331 455432 24554444455555666667776662
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 287 QPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 287 ~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
++. .+. ..+..++.++|++.|+..+..
T Consensus 265 -~~~-----~GG--it~~~~i~~~A~~~gi~~~~~ 291 (354)
T 3jva_A 265 -LMK-----CGG--IHEALKINQICETAGIECMIG 291 (354)
T ss_dssp -HHH-----HTS--HHHHHHHHHHHHHTTCEEEEC
T ss_pred -chh-----cCC--HHHHHHHHHHHHHcCCeEEec
Confidence 111 111 334667778888888887643
No 321
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=53.40 E-value=20 Score=34.11 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CC
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE 260 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gE 260 (328)
.+.+++.+.++.||+ .||.|..++++.+ +.
T Consensus 77 Gt~~dfk~Lv~~aH~--~Gi~VilD~V~NHts~ 107 (549)
T 4aie_A 77 GTMADMDELISKAKE--HHIKIVMDLVVNHTSD 107 (549)
T ss_dssp CCHHHHHHHHHHHHH--TTCEEEEEECCSBCCT
T ss_pred CCHHHHHHHHHHHHH--CCCEEEEEECccCCcC
Confidence 478999999999999 9999999999987 53
No 322
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=53.29 E-value=1.1e+02 Score=27.22 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEE--ecc-----CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLT--SVD-----RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~--gg~-----~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~ 204 (328)
.+++..+.+++..+.|...+.+. |+. +........+.+.++++..++. ++.+.+-.. ..+.++.+.+
T Consensus 165 ~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~----~~~~i~~~~~ 238 (403)
T 3gnh_A 165 SPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMA--GIKVAAHAH----GASGIREAVR 238 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHT--TCEEEEEEC----SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEeC----CHHHHHHHHH
Confidence 34566777888888898877543 321 1111112358888999988887 555543222 3445667777
Q ss_pred cCCcEEeech
Q 020304 205 SGLDVFAHNI 214 (328)
Q Consensus 205 aG~~~i~~~~ 214 (328)
+|++.+.|..
T Consensus 239 ~g~~~i~H~~ 248 (403)
T 3gnh_A 239 AGVDTIEHAS 248 (403)
T ss_dssp TTCSEEEECT
T ss_pred hCCCEEecCC
Confidence 8888877743
No 323
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=53.10 E-value=33 Score=30.04 Aligned_cols=78 Identities=8% Similarity=0.000 Sum_probs=51.1
Q ss_pred CCCCchHHHHHHHHH-CCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHH
Q 020304 131 PDPMEPENTAKAIAS-WGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLV 203 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~-~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~ 203 (328)
.+.+.+.+.++.+.+ .|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..+
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~a~ 96 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLS---TEEKKEIFRIAKDEAKDQIALIAQVGSV-NLKEAVELGKYAT 96 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSEEEEECCCS-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCC---HHHHHHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHHHHH
Confidence 344556788888899 9999998865 5555565 466667777766532 346665544322 234 5566677
Q ss_pred HcCCcEEee
Q 020304 204 HSGLDVFAH 212 (328)
Q Consensus 204 ~aG~~~i~~ 212 (328)
++|.|.+.+
T Consensus 97 ~~Gadavlv 105 (293)
T 1f6k_A 97 ELGYDCLSA 105 (293)
T ss_dssp HHTCSEEEE
T ss_pred hcCCCEEEE
Confidence 789998865
No 324
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=52.99 E-value=30 Score=30.56 Aligned_cols=78 Identities=9% Similarity=0.038 Sum_probs=51.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+. ...+.+.+.+... -+. +..+...+
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~eEr~~v~~~~~~~~~grvpViaGvg~~-~t~~ai~la~~A~~ 104 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQS---LSEREQVLEIVAEEAKGKIKLIAHVGCV-STAESQQLAASAKR 104 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTTSEEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHh
Confidence 3444567888888999999998865 4555555 46666777776653 2346665544322 134 55666778
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 105 ~Gadavlv 112 (303)
T 2wkj_A 105 YGFDAVSA 112 (303)
T ss_dssp HTCSEEEE
T ss_pred CCCCEEEe
Confidence 89999875
No 325
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=52.78 E-value=21 Score=30.15 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=19.5
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 255 MLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 255 ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
..|+....+.+.+++++..++|+..+++|.|.
T Consensus 29 ~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS 60 (225)
T 3ugs_B 29 KLGYSQGVKTMQKLMEVCMEENISNLSLFAFS 60 (225)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 34665556667777777777777777776665
No 326
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=52.75 E-value=35 Score=30.16 Aligned_cols=77 Identities=9% Similarity=0.058 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+.. .-+. +..+..+++
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~A~~~ 108 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLT---SSERLEVVSRVRQAMPKNRLLLAGSGC-ESTQATVEMTVSMAQV 108 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSC---HHHHHHHHHHHHHTSCTTSEEEEECCC-SSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCC---HHHHHHHHHHHHHHcCCCCcEEEecCC-CCHHHHHHHHHHHHHc
Confidence 344557788888899999998865 5555565 466777888877653 34666544322 2233 566778888
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 109 Gadavlv 115 (307)
T 3s5o_A 109 GADAAMV 115 (307)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999875
No 327
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=52.73 E-value=63 Score=30.26 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=45.9
Q ss_pred eEEEEc-C--CCHHHHHHHHHHHHhCCCCEEeeecccCC--CCCCc-ccCCCCCHHHHHHHHH---HHHhcCCceeee-c
Q 020304 253 SIMLGL-G--ESDDDLKEAMADLRSIDVDILTLGQYLQP--TPLHL-TVKEYVTPEKFDFWKA---YGESIGFRYVAS-G 322 (328)
Q Consensus 253 ~~ivGl-g--Et~e~~~~~l~~l~~l~~~~i~i~~~l~P--Tp~~~-~~~~~~~~~~~~~l~~---~~~~~G~~~~~~-g 322 (328)
++|=|+ | =|.|++.+.++++.+.+... .+ | .| -|.+. ...+..+.++++++++ .+.+.|++++.. +
T Consensus 4 GvIEGFYG~PWS~e~R~~l~~f~g~~kmNt-Yi--Y-APKDDpyhr~~WRe~Yp~eel~~l~eLv~~a~~~~V~Fv~ais 79 (447)
T 2xsa_A 4 GVIEGFYGRDWRRDERATVMDWIAAAGMNT-YI--Y-GPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLA 79 (447)
T ss_dssp EEEECCSSSCCCHHHHHHHHHHHHHTTCCE-EE--E-CCTTCTTTTTTTTSCCCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCCce-EE--E-ccCCChHHHHhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 566677 6 69999999999999998874 12 3 26 34432 3456667766665555 466889988776 6
Q ss_pred c
Q 020304 323 P 323 (328)
Q Consensus 323 ~ 323 (328)
|
T Consensus 80 P 80 (447)
T 2xsa_A 80 P 80 (447)
T ss_dssp C
T ss_pred C
Confidence 6
No 328
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=52.50 E-value=14 Score=32.90 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCC---HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGD---LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~---~e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+ -+..+...+
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls---~~Er~~v~~~~v~~~~grvpViaGvg~~-~t~~ai~la~~A~~ 117 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLS---DPEWDEVVDFTLKTVAHRVPTIVSVSDL-TTAKTVRRAQFAES 117 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCBEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHh
Confidence 3445567888899999999998865 5655565 466667777765532 235554433222 13 356677888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 118 ~Gadavlv 125 (315)
T 3na8_A 118 LGAEAVMV 125 (315)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999875
No 329
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=52.47 E-value=91 Score=27.31 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++.+++...++...+.|++.|--+.|-.+.-.. .+.+.-+-+.++...+.+.+.+ .+++.+.+.+..|.++|.+++
T Consensus 185 Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT--~edv~lmr~~v~~~g~~v~VKA--AGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 185 LTADEIIAGCVLSSLAGADYVKTSTGFNGPGAS--IENVSLMSAVCDSLQSETRVKA--SGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCC--HHHHHHHHHHHHHSSSCCEEEE--ESSCCSHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC--HHHHHHHHHHHHHhCCCceEEE--eCCCCCHHHHHHHHHcCCcee
Q ss_pred ee--chhhHHH
Q 020304 211 AH--NIETVKR 219 (328)
Q Consensus 211 ~~--~~et~~~ 219 (328)
-. +.++++.
T Consensus 261 GtS~g~~I~~~ 271 (288)
T 3oa3_A 261 GASAGVKIVNE 271 (288)
T ss_dssp EESCHHHHHHH
T ss_pred ehhhHHHHHHH
No 330
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=52.44 E-value=40 Score=29.02 Aligned_cols=160 Identities=9% Similarity=-0.038 Sum_probs=86.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEe
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
+..++.+.++.+.+.|++++++..-+. . + .++++.+.+.. .+.+.+. ++.-+. .++.+. +|++++.
T Consensus 36 ~~~dp~~~A~~~~~~Ga~~l~vvDL~~---~--n----~~~i~~i~~~~-~~pv~vg--GGir~~-~~~~~l-~Ga~~Vi 101 (260)
T 2agk_A 36 SQHPSSYYAKLYKDRDVQGCHVIKLGP---N--N----DDAAREALQES-PQFLQVG--GGINDT-NCLEWL-KWASKVI 101 (260)
T ss_dssp -CCCHHHHHHHHHHTTCTTCEEEEESS---S--C----HHHHHHHHHHS-TTTSEEE--SSCCTT-THHHHT-TTCSCEE
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEeCCC---C--C----HHHHHHHHhcC-CceEEEe--CCCCHH-HHHHHh-cCCCEEE
Confidence 345688999999999999887753332 1 1 23455555543 2344332 222244 566666 9999998
Q ss_pred echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEe---------EEEEcCCC---HHHHH-HHHHHHHhCCCC
Q 020304 212 HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSS---------IMLGLGES---DDDLK-EAMADLRSIDVD 278 (328)
Q Consensus 212 ~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~---------~ivGlgEt---~e~~~-~~l~~l~~l~~~ 278 (328)
++-..++.- ....++...+.++...+ ..+.+..+ .+...|-. ..+.. ++++.+.++ ++
T Consensus 102 igs~a~~~~------g~~~p~~~~~~~~~~g~--~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~ 172 (260)
T 2agk_A 102 VTSWLFTKE------GHFQLKRLERLTELCGK--DRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TN 172 (260)
T ss_dssp ECGGGBCTT------CCBCHHHHHHHHHHHCG--GGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CS
T ss_pred ECcHHHhhc------CCCCHHHHHHHHHHhCc--CcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cC
Confidence 875443210 02335666666665542 22222222 22222322 22445 788888899 98
Q ss_pred EEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhc----CCceeeec
Q 020304 279 ILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESI----GFRYVASG 322 (328)
Q Consensus 279 ~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~----G~~~~~~g 322 (328)
.+.++... .-.+ .. .. .++.+++++... ++..+++|
T Consensus 173 ~il~t~i~---~dG~-~~-G~---d~eli~~l~~~~~~~~~iPVIasG 212 (260)
T 2agk_A 173 EFLIHAAD---VEGL-CG-GI---DELLVSKLFEWTKDYDDLKIVYAG 212 (260)
T ss_dssp EEEEEC-----------C-CC---CHHHHHHHHHHHTTCSSCEEEEES
T ss_pred EEEEEeec---cccC-cC-CC---CHHHHHHHHHhhcccCCceEEEeC
Confidence 88774222 1110 01 11 356666777777 77777776
No 331
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=52.40 E-value=39 Score=30.06 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=51.1
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCC--CC-------CCC---c---HHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRD--DI-------PDG---G---SGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRA 198 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~--~l-------~~~---~---~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~ 198 (328)
++.+.++.+.+.|++.|.++++... .+ ..+ + .....++++.+++..+ ++.+. .++++.+.+.
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi--~~GGI~~~~d 303 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPII--GVGGIDSVIA 303 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEE--EESSCCSHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEE--EECCCCCHHH
Confidence 5677788899999999998764310 00 000 1 2345577888887533 56664 3556668777
Q ss_pred HHHHHHcCCcEEeech
Q 020304 199 VETLVHSGLDVFAHNI 214 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~ 214 (328)
+.++.++|.|.+.++-
T Consensus 304 a~~~l~~GAd~V~igr 319 (336)
T 1f76_A 304 AREKIAAGASLVQIYS 319 (336)
T ss_dssp HHHHHHHTCSEEEESH
T ss_pred HHHHHHCCCCEEEeeH
Confidence 7777779999998853
No 332
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=52.40 E-value=43 Score=28.47 Aligned_cols=76 Identities=8% Similarity=-0.000 Sum_probs=42.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCC--CC--C--------HHHHHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF--RG--D--------LRAVETL 202 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~--~~--~--------~e~l~~L 202 (328)
.+.+.++.+++.|++.|-+.+.....+.+.....+.++-+.+++. ++.+.+.++.. .. . ++.++..
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A 93 (286)
T 3dx5_A 16 SFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDK--TLEITMISDYLDISLSADFEKTIEKCEQLAILA 93 (286)
T ss_dssp CHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGG--TCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHc--CCeEEEEecCCCCCCchhHHHHHHHHHHHHHHH
Confidence 467788888999999887754211001000123444544555555 56665543321 11 1 2467777
Q ss_pred HHcCCcEEee
Q 020304 203 VHSGLDVFAH 212 (328)
Q Consensus 203 ~~aG~~~i~~ 212 (328)
++.|+..+.+
T Consensus 94 ~~lG~~~v~~ 103 (286)
T 3dx5_A 94 NWFKTNKIRT 103 (286)
T ss_dssp HHHTCCEEEE
T ss_pred HHhCCCEEEE
Confidence 7788888765
No 333
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=52.35 E-value=29 Score=31.23 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCcEEeechh---hHHHHH-hhh---c-CCCCCHHH----HHHHHHHHHHhCCCCeEEEeEEEE----cCC
Q 020304 197 RAVETLVHSGLDVFAHNIE---TVKRLQ-RIV---R-DPRAGYEQ----SLEVLKHAKLSKKGLITKSSIMLG----LGE 260 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~e---t~~~~~-~~~---~-~~~~~~~~----~l~~i~~~~~~~~Gi~v~~~~ivG----lgE 260 (328)
+.++..+++|+|.+-++.- -++.+. ... . .-+.+.+. .+++++.+++.. ++.|..-+=.+ -|.
T Consensus 148 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~ 226 (340)
T 3gr7_A 148 NGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGL 226 (340)
T ss_dssp HHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSC
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCC
Confidence 3456677899999886432 123321 100 0 01234554 366777777643 44443322211 146
Q ss_pred CHHHHHHHHHHHHhCCCCEEeee
Q 020304 261 SDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
+.++..+.++.+.+.|++.+++.
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs 249 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVS 249 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 78899999999999999999985
No 334
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=52.25 E-value=15 Score=34.91 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeecccCCCCC----C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 261 SDDDLKEAMADLRSIDVDILTLGQYLQPTPL----H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~----~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+...+.+.++.|++||++.|.+.++. +.|. + ..+.+ +=+.+++.+|.+.+++.|++.+.
T Consensus 30 dl~Gi~~kLdYLk~LGvt~I~L~Pi~-~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~Vil 98 (549)
T 4aie_A 30 DLQGIISRLDYLEKLGIDAIWLSPVY-QSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVM 98 (549)
T ss_dssp CHHHHHTTHHHHHHHTCSEEEECCCE-ECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHhhHHHHHCCCCEEEeCCCc-CCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 67788888999999999999887655 2221 1 11222 33789999999999999998864
No 335
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=52.19 E-value=1.2e+02 Score=26.53 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=91.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHH-HHHHHHHHHHHhC---CCcEEE--EEeCCC-----CCCH----
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG-HFARTVKAMKKQK---PDIMVE--CLTSDF-----RGDL---- 196 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~-~l~~li~~ik~~~---~~~~i~--~~t~~~-----~~~~---- 196 (328)
+.++..+.++.+.+.|++.|-- . +.|..+..+ .+-+ .+++.. .++.+. +..+.. ..++
T Consensus 31 ~~~~~~~~l~~Al~~Gi~~~DT--A--~~Yg~G~sE~~lG~---al~~~~~~R~~v~I~TK~~~~~~~~~~~~~s~~~i~ 103 (327)
T 3eau_A 31 TDEMAEHLMTLAYDNGINLFDT--A--EVYAAGKAEVVLGN---IIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHII 103 (327)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEE--E--TTGGGGHHHHHHHH---HHHHHTCCGGGCEEEEEESBCCSSGGGBSSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEC--c--cccCCCChHHHHHH---HHHhcCCccCeEEEEEeecCCCCCCCCCCCCHHHHH
Confidence 3456678888889999996532 2 235422122 2333 344321 134332 211111 0122
Q ss_pred -HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 -RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 -e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
.+-+-|++.|+|.+-+-. ++.. ++....++.+++++.+++ .|.- --+|+ .-+.+++.+.+....+
T Consensus 104 ~~~e~SL~rLg~dyiDl~~-----lH~p--~~~~~~~e~~~al~~l~~--~Gki----r~iGvSn~~~~~l~~~~~~~~~ 170 (327)
T 3eau_A 104 EGLKASLERLQLEYVDVVF-----ANRP--DPNTPMEETVRAMTHVIN--QGMA----MYWGTSRWSSMEIMEAYSVARQ 170 (327)
T ss_dssp HHHHHHHHHHTCSCEEEEE-----ESSC--CTTSCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccceEE-----EeCC--CCCCCHHHHHHHHHHHHH--cCCe----eEEeecCCCHHHHHHHHHHHHH
Confidence 344556667766543200 0110 123468899999999999 8974 24677 7888888888877766
Q ss_pred CC---CCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 275 ID---VDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 275 l~---~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
.+ +..+.+ .|. ++. ....-..+...+++.|+..++-+|+.+
T Consensus 171 ~~~~~~~~~Q~-~~~---~~~-------~~~~~~~l~~~~~~~gi~v~a~spL~~ 214 (327)
T 3eau_A 171 FNLIPPICEQA-EYH---MFQ-------REKVEVQLPELFHKIGVGAMTWSPLAC 214 (327)
T ss_dssp TTCCCCCEEEE-ECB---TTB-------CHHHHHHHHHHHHHHCCEEEEECTTGG
T ss_pred cCCCCceeecc-ccc---ccc-------cchhHhhHHHHHHHcCCeEEEeccccC
Confidence 54 333333 221 121 111123567788999999999999875
No 336
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=52.04 E-value=14 Score=32.55 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+. ...+.+.+.+... -+. +..+..+++
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~a~~~ 96 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPTLT---TDEKELILKTVIDLVDKRVPVIAGTGTN-DTEKSIQASIQAKAL 96 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccccCC---HHHHHHHHHHHHHHhCCCCcEEEeCCcc-cHHHHHHHHHHHHHc
Confidence 344557888888899999998865 5555555 35566677766553 2345565433221 133 566677888
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 97 Gadavlv 103 (292)
T 3daq_A 97 GADAIML 103 (292)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998875
No 337
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=52.04 E-value=95 Score=27.47 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=78.5
Q ss_pred HHHHHHHHC--------CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe--C--------------CCC
Q 020304 138 NTAKAIASW--------GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--S--------------DFR 193 (328)
Q Consensus 138 ~~~~~~~~~--------G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t--~--------------~~~ 193 (328)
+.++...+. |+..+.+-|-..| + +.+.+...++++...+. ++.++.-. - ...
T Consensus 96 e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p-~-eENi~~Tk~vv~~ah~~--gvsVEaElG~igG~Edgv~~~~~~~~~y 171 (306)
T 3pm6_A 96 EIIKRAADLSRSETHEPGFDSIMVDMSHFS-K-EENLRLTRELVAYCNAR--GIATEAEPGRIEGGEDGVQDTVDLEGVL 171 (306)
T ss_dssp HHHHHHHHTC------CCCSEEEECCTTSC-H-HHHHHHHHHHHHHHHTT--TCEEEECSSBCCCCBTTBCCCTTCCCBC
T ss_pred HHHHHHHHhhhhccCCCCCCEEEEeCCCCC-H-HHHHHHHHHHHHHHHHc--CCeEEEEeeeeccccCCccccccccccC
Confidence 455666666 9999998654422 2 22345666666666655 66766411 0 011
Q ss_pred CCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHH
Q 020304 194 GDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADL 272 (328)
Q Consensus 194 ~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l 272 (328)
-+++.+..+.+.|+|.+.+++-+..-.|+.- .++.+++.. +.++.... .++++ ++-|= |-+.+++.+.
T Consensus 172 T~Peea~~Fv~TgvD~LAvaiGt~HG~Yk~~-~p~Ld~~~L-~~I~~~v~--~~vpL---VlHGgSG~p~e~i~~a---- 240 (306)
T 3pm6_A 172 TTPEESEEFVATGINWLAPAFGNVHGNYGPR-GVQLDYERL-QRINEAVG--ERVGL---VLHGADPFTKEIFEKC---- 240 (306)
T ss_dssp CCHHHHHHHHTTTCSEECCCSSCCSSCCCTT-CCCCCHHHH-HHHHHHHT--TTSEE---EECSCTTCCHHHHHHH----
T ss_pred CCHHHHHHHHHcCCCEEEEEcCccccCcCCC-CCccCHHHH-HHHHHHhC--CCCCE---EeeCCCCCCHHHHHHH----
Confidence 2688888888999999888776665555321 145666653 33443332 35553 34455 7777765544
Q ss_pred HhCCCCEEeeec
Q 020304 273 RSIDVDILTLGQ 284 (328)
Q Consensus 273 ~~l~~~~i~i~~ 284 (328)
.++|+..+++..
T Consensus 241 i~~GV~KiNi~T 252 (306)
T 3pm6_A 241 IERGVAKVNVNR 252 (306)
T ss_dssp HHTTEEEEEESH
T ss_pred HHcCCeEEEeCh
Confidence 468888888753
No 338
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=51.98 E-value=16 Score=32.61 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCCCCCCCchHHHHHHHHHCCCcEEEEEeccCCCCCC-------CcHHHHHHHHHHHHHhCCCcEEE
Q 020304 126 RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-------GGSGHFARTVKAMKKQKPDIMVE 186 (328)
Q Consensus 126 ~~~~~~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~-------~~~~~l~~li~~ik~~~~~~~i~ 186 (328)
.+..+.+.+.+.++++++.+.|++.|.+.|.......| .+-.-+.+.++.||+.+|++.+.
T Consensus 51 PGv~r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi 118 (330)
T 1pv8_A 51 PGVARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVA 118 (330)
T ss_dssp TTCEEECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEE
T ss_pred CCceeecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEE
Confidence 33344566778999999999999999998763211111 01146788899999999997764
No 339
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=51.95 E-value=46 Score=29.74 Aligned_cols=38 Identities=21% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 236 EVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 236 ~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
..+..+++ .|+.|.+ =| -||.++ ++.++++|++.+.=+
T Consensus 273 ~ii~la~~--lg~~vvA---EG-VEt~~q----~~~L~~lG~d~~QGy 310 (340)
T 4hjf_A 273 SVVKLGQD--LDLEVVA---EG-VENAEM----AHALQSLGCDYGQGF 310 (340)
T ss_dssp HHHHHHHH--HTCEEEE---EC-CCSHHH----HHHHHHTTCCEEEST
T ss_pred HHHHHHHH--cCCEEEE---Ee-CCcHHH----HHHHHHcCCCEeecC
Confidence 34566778 8887522 23 477665 678899999987653
No 340
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=51.91 E-value=40 Score=29.63 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=45.6
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHH-cCCcEEeech
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFAHNI 214 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~-aG~~~i~~~~ 214 (328)
..+.++++.+.|+..|.-+|+.++.. .+.+.+.++++... ..+.+. ..++ ++.+-+..+.+ +|++.+..+.
T Consensus 168 ~~~Ale~Li~lGvdrILTSG~~~~a~--~Gl~~Lk~Lv~~a~---~rI~Im--aGGG-V~~~Ni~~l~~~tG~~~~H~S~ 239 (287)
T 3iwp_A 168 PMAALETLLTLGFERVLTSGCDSSAL--EGLPLIKRLIEQAK---GRIVVM--PGGG-ITDRNLQRILEGSGATEFHCSA 239 (287)
T ss_dssp HHHHHHHHHHHTCSEEEECTTSSSTT--TTHHHHHHHHHHHT---TSSEEE--ECTT-CCTTTHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHHHcCCCEEECCCCCCChH--HhHHHHHHHHHHhC---CCCEEE--ECCC-cCHHHHHHHHHhhCCCEEeECc
Confidence 56777888888999988777654332 34666666665432 235553 3444 36666666654 9999998754
No 341
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=51.80 E-value=1e+02 Score=25.60 Aligned_cols=74 Identities=8% Similarity=0.159 Sum_probs=46.7
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC----HHHHHHHHHcCCcEE
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLDVF 210 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~----~e~l~~L~~aG~~~i 210 (328)
.+.+.++.+.+.|++.|-+.....+ + +...+.+.++-+.+++. ++.+.........+ ++.++..++.|+..+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~-~-~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v 106 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLP-L-NSTDEQIRAFHDKCAAH--KVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLI 106 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSC-T-TCCHHHHHHHHHHHHHT--TCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccCC-C-CCCHHHHHHHHHHHHHc--CCeEEEEeccccCCHHHHHHHHHHHHHhCCCEE
Confidence 5678888889999999988654311 1 11245666766667766 66665433221112 466777888898887
Q ss_pred ee
Q 020304 211 AH 212 (328)
Q Consensus 211 ~~ 212 (328)
.+
T Consensus 107 ~~ 108 (257)
T 3lmz_A 107 VG 108 (257)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 342
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=51.76 E-value=53 Score=29.77 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHHHCCCcEEEEEeccCCCCCCCc-----HHHHHHHHHHHHHhCC--CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 142 AIASWGVDYIVLTSVDRDDIPDGG-----SGHFARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 142 ~~~~~G~~~i~l~gg~~~~l~~~~-----~~~l~~li~~ik~~~~--~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
...+.|+.-|.+.......++... .+++.++++.+++..+ ++.+..+..+ ....++.|++.|++.+.++
T Consensus 205 ~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g---~~~~l~~l~~~g~d~i~~d 280 (368)
T 4exq_A 205 AQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKG---GGLWLEDLAATGVDAVGLD 280 (368)
T ss_dssp HHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETT---CGGGHHHHHTSSCSEEECC
T ss_pred HHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCC---cHHHHHHHHHhCCCEEeeC
Confidence 345679998866432222344322 2455556665554323 2444333333 3467889999999988763
No 343
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=51.61 E-value=29 Score=29.56 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.|.+.+.+.+..+++-|...+++.
T Consensus 216 ~t~~aL~~ii~~l~~~Gy~fvtl~ 239 (247)
T 2j13_A 216 DNAEALAKIIDDLREKGYHFKSLD 239 (247)
T ss_dssp THHHHHHHHHHHHHHTTCEEECHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEhH
Confidence 455666666666666666665553
No 344
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=51.59 E-value=12 Score=34.88 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCC----------HHHHHHHHHHHHhCCCCEEee
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GES----------DDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt----------~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.+++.+.++.+|+ .||.|..++++.+ ++. .+.+.+.+++-.+.|+|-+.+
T Consensus 79 Gt~~d~~~lv~~ah~--~Gi~vilD~V~NH~s~~~wF~~q~~~Vr~~~~~~~~~Wl~~gvDGfRl 141 (424)
T 2dh2_A 79 GSKEDFDSLLQSAKK--KSIRVILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQV 141 (424)
T ss_dssp CCHHHHHHHHHHHHH--TTCEEEEECCTTTTSSSTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHH--CCCEEEEEECCCcCCCcccccccCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 378999999999999 9999999999887 632 355677777666789987665
No 345
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=51.56 E-value=34 Score=31.44 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccCC----CCCC--cccC-------------CCCCHHHHHHHHHHHHhcCCcee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQP----TPLH--LTVK-------------EYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P----Tp~~--~~~~-------------~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.++.+...++++.+++.|++.+-+..| .| ||.. .+.. -.++.+.+..|++.+++.|+.++
T Consensus 40 ~Gsle~A~~li~~Ak~aGAdavKfQ~~-k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 118 (385)
T 1vli_A 40 DGKLDQAFALIDAAAEAGADAVKFQMF-QADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFL 118 (385)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEECCB-CGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEE
T ss_pred cccHHHHHHHHHHHHHhCCCEEeeeee-ccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 778999999999999999999998444 35 3432 1110 04677889999999999999988
Q ss_pred ee
Q 020304 320 AS 321 (328)
Q Consensus 320 ~~ 321 (328)
..
T Consensus 119 st 120 (385)
T 1vli_A 119 ST 120 (385)
T ss_dssp CB
T ss_pred Ec
Confidence 65
No 346
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=51.44 E-value=1.3e+02 Score=26.80 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCcEEeec----hhhHHH--HHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE
Q 020304 197 RAVETLVHSGLDVFAHN----IETVKR--LQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG 257 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~----~et~~~--~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG 257 (328)
+.++.|++.|++.+.+- ..+.+. +. ...+...+.+..+++++.|++ .|+.|.....+-
T Consensus 57 ~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~-~~~~~t~~~~~v~~~~~~Ak~--~GL~V~l~p~i~ 120 (343)
T 3civ_A 57 ASMRALAEQPFNWVTLAFAGLMEHPGDPAIA-YGPPVTVSDDEIASMAELAHA--LGLKVCLKPTVN 120 (343)
T ss_dssp HHHHHHHHSSCSEEEEEEEEEESSTTCCCCB-CSTTTBCCHHHHHHHHHHHHH--TTCEEEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEeeecCCCCCCCccc-ccCCCCCCHHHHHHHHHHHHH--CCCEEEEEEEee
Confidence 56777777777776551 111110 00 000112378899999999999 999988766554
No 347
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=51.26 E-value=1.2e+02 Score=26.45 Aligned_cols=86 Identities=8% Similarity=0.082 Sum_probs=48.3
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHH-HHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKE-AMA 270 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~-~l~ 270 (328)
|--.++.+.++|++.+..+.....-.. .-. ...+.++.+...+.+.+--..-.+.+++-+|- +.+.++..+ ..+
T Consensus 43 Da~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt--~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~r 120 (281)
T 1oy0_A 43 DYSTARIFDEAGIPVLLVGDSAANVVYGYDTT--VPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATR 120 (281)
T ss_dssp SHHHHHHHHTTTCCEEEECTTHHHHTTCCSSS--SSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHHHH
Confidence 778888888999998877544333221 111 13466766666665544211123445555543 456666544 455
Q ss_pred HHHhCCCCEEee
Q 020304 271 DLRSIDVDILTL 282 (328)
Q Consensus 271 ~l~~l~~~~i~i 282 (328)
.+++.|++.+.+
T Consensus 121 l~~eaGa~aVkl 132 (281)
T 1oy0_A 121 FLKDGGAHAVKL 132 (281)
T ss_dssp HHHTTCCSEEEE
T ss_pred HHHHhCCeEEEE
Confidence 556677666554
No 348
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=51.26 E-value=43 Score=29.35 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.++++++.+.|++.+.+- + +. ++.+.+.++.++. .+.+.+ .++ ++.+.+..+.++|+|.+.++-
T Consensus 206 ~eea~eA~~aGaD~I~ld--~---~~---~~~~k~av~~v~~---~ipi~A--sGG-It~eni~~~a~tGvD~IsVgs 269 (286)
T 1x1o_A 206 LEELEEALEAGADLILLD--N---FP---LEALREAVRRVGG---RVPLEA--SGN-MTLERAKAAAEAGVDYVSVGA 269 (286)
T ss_dssp HHHHHHHHHHTCSEEEEE--S---CC---HHHHHHHHHHHTT---SSCEEE--ESS-CCHHHHHHHHHHTCSEEECTH
T ss_pred HHHHHHHHHcCCCEEEEC--C---CC---HHHHHHHHHHhCC---CCeEEE--EcC-CCHHHHHHHHHcCCCEEEEcH
Confidence 566777778899887773 2 22 3666666665542 355554 344 489999999999999999853
No 349
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=51.25 E-value=99 Score=26.82 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred chHHHHHHHHHCCCcEEEEEe-ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~g-g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++.+.+......|+..|.+-= .+.--.. ..++..+-+.++ ..+.+++.. ++|+++...+...+.+.+-
T Consensus 54 Dpv~aA~~ae~aGAdGITvHlReDrRHI~---d~Dv~~L~~~i~---t~lNlEma~-----t~emi~ial~~kP~~vtLV 122 (278)
T 3gk0_A 54 DPVRAALAAEDAGADAITLHLREDRRHIV---DADVRTLRPRVK---TRMNLECAV-----TPEMLDIACEIRPHDACLV 122 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTCSSSC---HHHHHHHHHHCS---SCEEEEECS-----SHHHHHHHHHHCCSEEEEC
T ss_pred CHHHHHHHHHHcCCCEEEeccCCCcccCC---HHHHHHHHHHcC---CCEEeecCC-----CHHHHHHHHHcCCCEEEEC
Confidence 456677777889999887741 1111122 133433322222 246666532 7899999999999999987
Q ss_pred hhhHHHHH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC
Q 020304 214 IETVKRLQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH 292 (328)
Q Consensus 214 ~et~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~ 292 (328)
+|.-+++. ..--+.....+...++++.+++ .|+.|+..+ +... +.++...++|++.|-++ |..+
T Consensus 123 PEkreE~TTegGlDv~~~~~~L~~~i~~L~~--~GIrVSLFI-----Dpd~---~qI~aA~~~GAd~IELh-----TG~Y 187 (278)
T 3gk0_A 123 PEKRSELTTEGGLDVVGHFDAVRAACKQLAD--AGVRVSLFI-----DPDE---AQIRAAHETGAPVIELH-----TGRY 187 (278)
T ss_dssp CCSGGGBCSSSSBCTTTTHHHHHHHHHHHHH--TTCEEEEEE-----CSCH---HHHHHHHHHTCSEEEEC-----CHHH
T ss_pred CCCCCCcCCCcchhhhccHHHHHHHHHHHHH--CCCEEEEEe-----CCCH---HHHHHHHHhCcCEEEEe-----cchh
Confidence 66554432 1100123467888899999999 999876432 2222 35678889999998884 2211
Q ss_pred cccCC-CCCHHHHHHH---HHHHHhcCCceeee
Q 020304 293 LTVKE-YVTPEKFDFW---KAYGESIGFRYVAS 321 (328)
Q Consensus 293 ~~~~~-~~~~~~~~~l---~~~~~~~G~~~~~~ 321 (328)
-.... .-...+++.+ .+.+.++|+..-+-
T Consensus 188 A~a~~~~~~~~el~rl~~aA~~A~~lGL~VnAG 220 (278)
T 3gk0_A 188 ADAHDAAEQQREFERIATGVDAGIALGLKVNAG 220 (278)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHcCCEEecC
Confidence 00000 0012344444 44567888876543
No 350
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=51.21 E-value=1.2e+02 Score=26.18 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=55.4
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHH--hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQ--RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMAD 271 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~ 271 (328)
|.-.++.+.++|++.+.++.....-.. .-. ...+.++.+...+.+.+--..-.+.+++-+|- + +.++..++...
T Consensus 26 D~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt--~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~-~~~~a~~~a~r 102 (264)
T 1m3u_A 26 DYSFAKLFADEGLNVMLVGDSLGMTVQGHDST--LPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA-TPEQAFENAAT 102 (264)
T ss_dssp SHHHHHHHHHHTCCEEEECTTHHHHTTCCSSS--TTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCC--CCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcC-CHHHHHHHHHH
Confidence 788899999999999998654433321 111 13578888877777655222224567766643 4 77777777767
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|++.+.+
T Consensus 103 l~kaGa~aVkl 113 (264)
T 1m3u_A 103 VMRAGANMVKI 113 (264)
T ss_dssp HHHTTCSEEEC
T ss_pred HHHcCCCEEEE
Confidence 66677776654
No 351
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=50.81 E-value=79 Score=32.92 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC----HHHHHHHHHcCCcEEeechhhHHHHH-hhhc-CCCCCHHHHHHHH
Q 020304 165 GSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGLDVFAHNIETVKRLQ-RIVR-DPRAGYEQSLEVL 238 (328)
Q Consensus 165 ~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~----~e~l~~L~~aG~~~i~~~~et~~~~~-~~~~-~~~~~~~~~l~~i 238 (328)
..+.+.+-++.+++..|+..+.+...... + .+.++.+.++|+|.+.+|+..-.... +... .-..+.+...+.+
T Consensus 617 ~~~~~~~~i~~~~~~~~~~~~i~~i~~g~-~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv 695 (1025)
T 1gte_A 617 TAAYWCQSVTELKADFPDNIVIASIMCSY-NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 695 (1025)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEECCCS-CHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHH
Confidence 35666666677777666555433322111 2 35677777899999988654322111 1000 0013577788888
Q ss_pred HHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 239 KHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 239 ~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+.+++. .++++..-+. -+.+++.+.++.+.+.|++.+.+.+
T Consensus 696 ~~v~~~-~~~Pv~vK~~----~~~~~~~~~a~~~~~~G~d~i~v~N 736 (1025)
T 1gte_A 696 RWVRQA-VQIPFFAKLT----PNVTDIVSIARAAKEGGADGVTATN 736 (1025)
T ss_dssp HHHHHH-CSSCEEEEEC----SCSSCHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHh-hCCceEEEeC----CChHHHHHHHHHHHHcCCCEEEEec
Confidence 888762 2555443332 1223577788889999999988843
No 352
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=50.69 E-value=1.2e+02 Score=32.03 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=46.1
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++-..+.++++.+.|++.|.|-....-.. +..+.++++.+++.. ++.+.+. +++.-+--...-.-.++|++.+-
T Consensus 708 ~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~----P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd 782 (1165)
T 2qf7_A 708 LKYYTNLAVELEKAGAHIIAVKDMAGLLK----PAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVD 782 (1165)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTCCCC----HHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCccCCcC----HHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEE
Confidence 34467888888899999888854332112 578889999998875 4444332 23222223333334478999886
Q ss_pred e
Q 020304 212 H 212 (328)
Q Consensus 212 ~ 212 (328)
.
T Consensus 783 ~ 783 (1165)
T 2qf7_A 783 A 783 (1165)
T ss_dssp E
T ss_pred e
Confidence 4
No 353
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=50.66 E-value=67 Score=31.53 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEeechh---hHHHHH-hhhc----CCCCCHHH----HHHHHHHHHHhC-CCCeEEEeEEE-E--c-C
Q 020304 197 RAVETLVHSGLDVFAHNIE---TVKRLQ-RIVR----DPRAGYEQ----SLEVLKHAKLSK-KGLITKSSIML-G--L-G 259 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~~~e---t~~~~~-~~~~----~~~~~~~~----~l~~i~~~~~~~-~Gi~v~~~~iv-G--l-g 259 (328)
+.++..+++|+|.+-++.- -++.+. ...+ .-+.+.+. .++.++.+++.. +++.+..-+=. . . |
T Consensus 145 ~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g 224 (671)
T 1ps9_A 145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDG 224 (671)
T ss_dssp HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTC
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCC
Confidence 3456677899999876321 122221 1000 00123433 355666665522 34433221111 1 1 6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
.+.++..+.++.+.+.|++.+.++
T Consensus 225 ~~~~~~~~~a~~l~~~g~d~i~v~ 248 (671)
T 1ps9_A 225 GTFAETVELAQAIEAAGATIINTG 248 (671)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEcC
Confidence 788999999999999999999885
No 354
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=50.65 E-value=12 Score=33.05 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=50.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++...+.. ..+.+.+.+... -+. +..+..++
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~a~~ 100 (297)
T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTTGESATLS---VEEHTAVIEAVVKHVAKRVPVIAGTGAN-NTVEAIALSQAAEK 100 (297)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCcccCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCc-CHHHHHHHHHHHHH
Confidence 3445567888888999999998865 5555555 466667777665532 245554433221 133 56777888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 101 ~Gadavlv 108 (297)
T 3flu_A 101 AGADYTLS 108 (297)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999875
No 355
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=50.49 E-value=25 Score=32.58 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCC--------cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLH--------LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~--------~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
-+...+.+.++.|+++|++.|.+.++. +.+.. ..+.+ .=+.+++..+.+.+++.|++.+.
T Consensus 20 Gd~~gi~~~LdyL~~LGv~~I~L~Pi~-~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~Vil 88 (441)
T 1lwj_A 20 GDFRGLKNAVSYLKELGIDFVWLMPVF-SSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVL 88 (441)
T ss_dssp CCHHHHHHTHHHHHHTTCCEEEECCCE-ECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHhhHHHHHcCCCEEEeCCCc-CCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 367888889999999999999886554 22211 11222 23689999999999999998764
No 356
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=50.39 E-value=69 Score=28.68 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=92.5
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCC--CcH-HHHHHHHHH-HHHhCCCcEEE--EEe---CCC---CCCH----
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGS-GHFARTVKA-MKKQKPDIMVE--CLT---SDF---RGDL---- 196 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~--~~~-~~l~~li~~-ik~~~~~~~i~--~~t---~~~---~~~~---- 196 (328)
.++..+.++.+.+.|++.|-- . +.|.+ +.. +.+-+.++. +.....++.+. +.. ++. ..++
T Consensus 63 ~~~~~~~l~~Al~~Gi~~~DT--A--~~Yg~~~G~sE~~lG~al~~~~~~~R~~v~I~TK~g~~~~~~~~~~~~s~~~i~ 138 (353)
T 3erp_A 63 VENSRALLQRAFDLGITHFDL--A--NNYGPPPGSAECNFGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLI 138 (353)
T ss_dssp HHHHHHHHHHHHHTTCCEEEC--C--TTCTTTTTHHHHHHHHHHHHHTGGGGGGCEEEEEESSCCSSSTTSSTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEC--h--hhhCCCCChHHHHHHHHHHhhccCCCCeEEEEeeeccCCCCCcccCCCCHHHHH
Confidence 456678888899999985532 2 23543 222 233444442 11101234443 211 110 0133
Q ss_pred -HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHh
Q 020304 197 -RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRS 274 (328)
Q Consensus 197 -e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~ 274 (328)
.+-+-|++.|+|.+-+-. ++.. ++....++.+++++.+++ .|.. --+|+ .-+.+++.+.+..+.+
T Consensus 139 ~~~e~SL~rLg~dyiDl~~-----lH~p--~~~~~~~e~~~aL~~l~~--~Gki----r~iGvSn~~~~~l~~~~~~~~~ 205 (353)
T 3erp_A 139 ASLDQSLKRMGLEYVDIFY-----HHRP--DPETPLKETMKALDHLVR--HGKA----LYVGISNYPADLARQAIDILED 205 (353)
T ss_dssp HHHHHHHHHHTCSCEEEEE-----ECSC--CTTSCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEeEEE-----ecCC--CCCCCHHHHHHHHHHHHH--CCCc----cEEEecCCCHHHHHHHHHHHHH
Confidence 233456667766543200 0000 123467899999999999 8974 24677 7888999888888877
Q ss_pred CCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 275 IDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 275 l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
.++....+ +.- -+++.. . + ...+...+.+.|+..++.+|+.+
T Consensus 206 ~~~~~~~~-Q~~-~~~~~~----~--~--e~~ll~~~~~~gI~v~a~spL~~ 247 (353)
T 3erp_A 206 LGTPCLIH-QPK-YSLFER----W--V--EDGLLALLQEKGVGSIAFSPLAG 247 (353)
T ss_dssp HTCCEEEE-ECB-CBTTBC----G--G--GGTHHHHHHHHTCEEEEBSTTGG
T ss_pred cCCCeEEe-ecc-cccccc----c--h--hhHHHHHHHHcCCeEEEeccccc
Confidence 66543322 211 022211 1 1 13467889999999999999875
No 357
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=50.39 E-value=25 Score=29.43 Aligned_cols=113 Identities=9% Similarity=0.132 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCcEEEEEec--cCCCCCCC-cHHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCHHH---HHHHHHcCCcE
Q 020304 137 ENTAKAIASWGVDYIVLTSV--DRDDIPDG-GSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRA---VETLVHSGLDV 209 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg--~~~~l~~~-~~~~l~~li~~ik~~~~~-~~i~~~t~~~~~~~e~---l~~L~~aG~~~ 209 (328)
.++++++.+.|+ +.|. +|..+... + ..+.+.+++|.+..++ +.+++...+ .++. .+.|.+.+ ..
T Consensus 10 ~~ei~~~~~~g~----i~GVTTNPsli~k~~g-~~~~~~~~eI~~~v~G~Vs~EV~a~d---~e~mi~ea~~l~~~~-~n 80 (212)
T 3r8r_A 10 IDEIREANELGI----LAGVTTNPSLVAKEAN-VSFHDRLREITDVVKGSVSAEVISLK---AEEMIEEGKELAKIA-PN 80 (212)
T ss_dssp HHHHHHHHHTTC----EEEEECCHHHHHTSCS-SCHHHHHHHHHHHCCSCEEEECCCSS---HHHHHHHHHHHHTTC-TT
T ss_pred HHHHHHHHhcCC----cccccCCHHHHHHccC-CCHHHHHHHHHHhcCCCEEEEEecCC---HHHHHHHHHHHHHhC-CC
Confidence 467778888875 3332 22222221 1 2466778888776555 334432221 2333 34444443 11
Q ss_pred EeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEee
Q 020304 210 FAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 210 i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
+.+ ++ ..++ +-+++++.+.+ .|+.++.+.++.. .+.. ...+.|++.++.
T Consensus 81 v~I---------KI----P~T~-eGl~A~~~L~~--~GI~vn~TlifS~----~Qa~----~Aa~AGa~yISP 129 (212)
T 3r8r_A 81 ITV---------KI----PMTS-DGLKAVRALTD--LGIKTNVTLIFNA----NQAL----LAARAGATYVSP 129 (212)
T ss_dssp EEE---------EE----ESSH-HHHHHHHHHHH--TTCCEEEEEECSH----HHHH----HHHHHTCSEEEE
T ss_pred EEE---------Ee----CCCH-HHHHHHHHHHH--CCCcEEEEEeCCH----HHHH----HHHHcCCeEEEe
Confidence 111 21 2454 55789999999 9999999999854 3222 345568877654
No 358
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=50.19 E-value=93 Score=27.30 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=60.7
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHH-H-HhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKR-L-QRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADL 272 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~-~-~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l 272 (328)
|.-..+.+.++|++.+.++-.++.. + +.-. ...++++.+..++.+.+. ..+++.+++=.|+| +.+++.+++..+
T Consensus 28 D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~--~~vt~~em~~~~~~I~~~-~~~PviaD~d~Gyg-~~~~v~~~v~~l 103 (295)
T 1s2w_A 28 NGLSARIVQEAGFKGIWGSGLSVSAQLGVRDS--NEASWTQVVEVLEFMSDA-SDVPILLDADTGYG-NFNNARRLVRKL 103 (295)
T ss_dssp SHHHHHHHHHHTCSCEEECCHHHHHTC-----------CHHHHHHHHHHHHT-CSSCEEEECCSSCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeChHHHHHhCCCCCC--CCCCHHHHHHHHHHHHhc-CCCCEEecCCCCCC-CHHHHHHHHHHH
Confidence 7788888999999999986433222 2 1111 135789999998887652 56778899888987 468899999999
Q ss_pred HhCCCCEEee
Q 020304 273 RSIDVDILTL 282 (328)
Q Consensus 273 ~~l~~~~i~i 282 (328)
.+.|+.-+.+
T Consensus 104 ~~aGaagv~i 113 (295)
T 1s2w_A 104 EDRGVAGACL 113 (295)
T ss_dssp HHTTCCEEEE
T ss_pred HHcCCcEEEE
Confidence 9999998887
No 359
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=50.10 E-value=75 Score=27.25 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=61.5
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLR 273 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~ 273 (328)
|.-..+.+.++|++.+.++-.++.... -..+ ...++++.+..++.+.+. ..+.+.+++=+|+|.+. .++...+.
T Consensus 29 D~~sA~~~~~aG~dai~vg~~s~a~~~-G~pD~~~vt~~em~~~~~~I~r~-~~~pviaD~~~Gyg~~~---~~~~~~l~ 103 (255)
T 2qiw_A 29 DTWSAGLVEEAGFSGLTIGSHPVADAT-GSSDGENMNFADYMAVVKKITSA-VSIPVSVDVESGYGLSP---ADLIAQIL 103 (255)
T ss_dssp SHHHHHHHHHTTCSCEEECHHHHHHHT-TCCTTTCSCHHHHHHHHHHHHHH-CSSCEEEECTTCTTCCH---HHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhC-CCCCCCCcCHHHHHHHHHHHHhc-CCCCEEeccCCCcCcHH---HHHHHHHH
Confidence 778888999999999999754333221 1111 146899999999988653 45789999999988887 66777777
Q ss_pred hCCCCEEee
Q 020304 274 SIDVDILTL 282 (328)
Q Consensus 274 ~l~~~~i~i 282 (328)
+.|+.-+.+
T Consensus 104 ~aGa~gv~i 112 (255)
T 2qiw_A 104 EAGAVGINV 112 (255)
T ss_dssp HTTCCEEEE
T ss_pred HcCCcEEEE
Confidence 799988877
No 360
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=49.84 E-value=1.2e+02 Score=25.85 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=75.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.+.++.+.+. ...+.+.... .+..+..+++. .+++. .++.+. .-+++.++-++...+.+|.|.+.+.
T Consensus 61 ~~~~~iA~~y~~~-A~~IsVlTd~--~~F~gs~~dL~----~ir~~-v~lPvL--rKDfi~~~~qi~ea~~~GAD~ilLi 130 (251)
T 1i4n_A 61 ASLEDFIRMYDEL-ADAISILTEK--HYFKGDPAFVR----AARNL-TCRPIL--AKDFYIDTVQVKLASSVGADAILII 130 (251)
T ss_dssp CCHHHHHHHHHHH-CSEEEEECCC--SSSCCCTHHHH----HHHTT-CCSCEE--EECCCCSTHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHh-CCceEEEecc--cccCCCHHHHH----HHHHh-CCCCEE--EeeCCCCHHHHHHHHHcCCCEEEEe
Confidence 4567778877776 7777554222 23333345444 44444 245553 3456667778888999999999885
Q ss_pred hhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhC-CCCEEeeec
Q 020304 214 IETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSI-DVDILTLGQ 284 (328)
Q Consensus 214 ~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l-~~~~i~i~~ 284 (328)
... .+.++..+.++.+++ .|+.+-+.+ .|.+| +..+.++ |++.+.+++
T Consensus 131 ~a~------------l~~~~l~~l~~~a~~--lGl~~lvEv-----~~~eE----~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 131 ARI------------LTAEQIKEIYEAAEE--LGMDSLVEV-----HSRED----LEKVFSVIRPKIIGINT 179 (251)
T ss_dssp GGG------------SCHHHHHHHHHHHHT--TTCEEEEEE-----CSHHH----HHHHHTTCCCSEEEEEC
T ss_pred ccc------------CCHHHHHHHHHHHHH--cCCeEEEEe-----CCHHH----HHHHHhcCCCCEEEEeC
Confidence 432 133667788888888 888753332 35565 4566778 999999864
No 361
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=49.59 E-value=79 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=8.7
Q ss_pred CHHHHHHHHHcCCcEEe
Q 020304 195 DLRAVETLVHSGLDVFA 211 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~ 211 (328)
+++.++.|+++|++.+-
T Consensus 215 ~~~~l~~l~~~GldgIE 231 (301)
T 3o0f_A 215 SDEQLDAMIADGLDGLE 231 (301)
T ss_dssp CHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHCCCCEEE
Confidence 44555555555554443
No 362
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=49.50 E-value=1.6e+02 Score=26.96 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=47.7
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCC----CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~----l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
+.+...+.++.+++.|+..+.++...+.. +..-+.+.+..+.+..++. |+.+. +.. .+++.++.+.+. +
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~--Gl~~~--te~--~d~~~~~~l~~~-v 226 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEY--GLGVI--SEI--VTPADIEVALDY-V 226 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH--TCEEE--EEC--CSGGGHHHHTTT-C
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHc--CCEEE--Eec--CCHHHHHHHHhh-C
Confidence 34556888999999999988776543211 1111245554444443444 66663 322 478888888888 9
Q ss_pred cEEeech
Q 020304 208 DVFAHNI 214 (328)
Q Consensus 208 ~~i~~~~ 214 (328)
+.+.++.
T Consensus 227 d~lkIgs 233 (385)
T 3nvt_A 227 DVIQIGA 233 (385)
T ss_dssp SEEEECG
T ss_pred CEEEECc
Confidence 9998854
No 363
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=49.47 E-value=72 Score=29.25 Aligned_cols=153 Identities=11% Similarity=-0.063 Sum_probs=81.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEEE-eccCC----CC-CCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLT-SVDRD----DI-PDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVE 200 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~-gg~~~----~l-~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~ 200 (328)
++++..+.++++.+.|++.+-+- |+... .. ...+.+.-.+.++++++.. +++.+.+-.|.. .+. +.++
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~-~~~~~A~~~~~ 229 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQ-FTVSGAKRLAR 229 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSC-BCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCC-cCHHHHHHHHH
Confidence 45677788888888999999884 32200 00 0012456677888888864 566665433433 243 3467
Q ss_pred HHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEE
Q 020304 201 TLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 201 ~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i 280 (328)
.|.+.|++.+-= -+. ..++ +.++.+++. .++++ + .+|+..+..+..+.++.-.++.+
T Consensus 230 ~l~~~~i~~iEe----------P~~--~~~~----~~~~~l~~~-~~iPI----a--~dE~~~~~~~~~~~i~~~a~d~v 286 (404)
T 4e5t_A 230 RLEAYDPLWFEE----------PIP--PEKP----EDMAEVARY-TSIPV----A--TGERLCTKYEFSRVLETGAASIL 286 (404)
T ss_dssp HHGGGCCSEEEC----------CSC--TTCH----HHHHHHHHH-CSSCE----E--ECTTCCHHHHHHHHHHHTCCSEE
T ss_pred HHhhcCCcEEEC----------CCC--cccH----HHHHHHHhh-CCCCE----E--eCCCcCCHHHHHHHHHhCCCCEE
Confidence 777777776531 011 1233 233333331 34442 2 25555555555555555556655
Q ss_pred eeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+- ++.. .. ..+..++.++|++.|+..+
T Consensus 287 ~~d----~~~~-----GG--it~~~~ia~~A~~~gi~~~ 314 (404)
T 4e5t_A 287 QMN----LGRV-----GG--LLEAKKIAAMAECHSAQIA 314 (404)
T ss_dssp CCC----TTTS-----SC--HHHHHHHHHHHHHTTCEEC
T ss_pred ecC----cccc-----CC--HHHHHHHHHHHHHcCCEEe
Confidence 441 1111 12 3345667777888887753
No 364
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=49.23 E-value=79 Score=29.09 Aligned_cols=153 Identities=12% Similarity=-0.040 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccC-C----CC-CCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDR-D----DI-PDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVE 200 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~-~----~l-~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~ 200 (328)
++++..+.++++.+.|++.+-+--|.+ . .. ...+.+.-.+.++++++.. +++.+.+-.|.. .+. +.++
T Consensus 144 ~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~-~~~~~A~~~~~ 222 (412)
T 4e4u_A 144 DPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQ-MVPSSAIRLAK 222 (412)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSC-BCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCC-CCHHHHHHHHH
Confidence 466777888888889999998842221 0 01 0011456677888888764 677765533433 243 3467
Q ss_pred HHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEE
Q 020304 201 TLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDIL 280 (328)
Q Consensus 201 ~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i 280 (328)
.|.+.|+..+-= -+. ..++ +.++.+++. .++++ + .+|+..+..+..+.++.-.++.+
T Consensus 223 ~L~~~~i~~iEe----------P~~--~~d~----~~~~~l~~~-~~iPI----a--~dE~~~~~~~~~~~i~~~a~d~v 279 (412)
T 4e4u_A 223 RLEKYDPLWFEE----------PVP--PGQE----EAIAQVAKH-TSIPI----A--TGERLTTKYEFHKLLQAGGASIL 279 (412)
T ss_dssp HHGGGCCSEEEC----------CSC--SSCH----HHHHHHHHT-CSSCE----E--ECTTCCHHHHHHHHHHTTCCSEE
T ss_pred HhhhcCCcEEEC----------CCC--hhhH----HHHHHHHhh-CCCCE----E--ecCccCCHHHHHHHHHcCCCCEE
Confidence 777777766531 011 1232 334444441 34442 2 35655555555555555556665
Q ss_pred eeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 281 TLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 281 ~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
.+- ++.. .. ..+..++.++|++.|+..+
T Consensus 280 ~~d----~~~~-----GG--it~~~kia~~A~~~gi~v~ 307 (412)
T 4e4u_A 280 QLN----VARV-----GG--LLEAKKIATLAEVHYAQIA 307 (412)
T ss_dssp CCC----TTTT-----TS--HHHHHHHHHHHHHTTCEEC
T ss_pred EeC----cccc-----CC--HHHHHHHHHHHHHcCCEEE
Confidence 441 2221 12 3346677778888888754
No 365
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=49.02 E-value=42 Score=30.48 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=49.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+.. .-+. +..+..++
T Consensus 77 ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls---~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~la~~A~~ 152 (360)
T 4dpp_A 77 FDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMS---WDEHIMLIGHTVNCFGGSIKVIGNTGS-NSTREAIHATEQGFA 152 (360)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecccccChhhCC---HHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence 3445567888888999999998855 5555555 355566776665532 34666554332 2234 45566677
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|+|.+.+
T Consensus 153 ~Gadavlv 160 (360)
T 4dpp_A 153 VGMHAALH 160 (360)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998765
No 366
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=49.01 E-value=12 Score=33.38 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=50.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCC---HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGD---LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~---~e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++...+.. ..+.+.+.+... -+ -+..+..++
T Consensus 41 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~~Er~~v~~~~v~~~~grvpViaGvg~~-st~eai~la~~A~~ 116 (314)
T 3qze_A 41 LDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLD---VEEHIQVIRRVVDQVKGRIPVIAGTGAN-STREAVALTEAAKS 116 (314)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCc-CHHHHHHHHHHHHH
Confidence 3444567888888899999998855 5655565 456666777665532 235554433221 13 356777888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 117 ~Gadavlv 124 (314)
T 3qze_A 117 GGADACLL 124 (314)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999875
No 367
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=48.80 E-value=81 Score=26.45 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=71.4
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et 216 (328)
.+.++++.+.|++.|.+.+... .. ++.+.++++.+++. ++.+.... .+.+.++.+.++|++.+..+...
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~--~~---p~~l~~~i~~~~~~--g~~v~~~v----~t~eea~~a~~~Gad~Ig~~~~g 159 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFR--SR---PVDIDSLLTRIRLH--GLLAMADC----STVNEGISCHQKGIEFIGTTLSG 159 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSS--CC---SSCHHHHHHHHHHT--TCEEEEEC----SSHHHHHHHHHTTCSEEECTTTT
T ss_pred HHHHHHHHHcCCCEEEECcccc--CC---hHHHHHHHHHHHHC--CCEEEEec----CCHHHHHHHHhCCCCEEEecCcc
Confidence 4567788899999887754331 11 14577888888875 55553322 37888999999999999653321
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 217 VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+....+ . ...++ +.++.+++ .+++ +|..=| .|.+++.+. .++|++-+.+..
T Consensus 160 ~t~~~~-~--~~~~~----~li~~l~~--~~ip----vIA~GGI~t~~d~~~~----~~~GadgV~VGs 211 (229)
T 3q58_A 160 YTGPIT-P--VEPDL----AMVTQLSH--AGCR----VIAEGRYNTPALAANA----IEHGAWAVTVGS 211 (229)
T ss_dssp SSSSCC-C--SSCCH----HHHHHHHT--TTCC----EEEESSCCSHHHHHHH----HHTTCSEEEECH
T ss_pred CCCCCc-C--CCCCH----HHHHHHHH--cCCC----EEEECCCCCHHHHHHH----HHcCCCEEEEch
Confidence 111001 0 12233 55666666 4554 233224 367776554 456999887754
No 368
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=48.52 E-value=35 Score=31.25 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeecccC-CCC--C----CcccC-C-CCCHHHHHHHHHHHHhcCCceee
Q 020304 261 SDDDLKEAMADLRSIDVDILTLGQYLQ-PTP--L----HLTVK-E-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp--~----~~~~~-~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+...+.+.++.|+++|++.|.+.++.. |+. . +..+. + .=+.+++.++.+.+++.|++.+.
T Consensus 19 ~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~Vil 87 (405)
T 1ht6_A 19 WYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIA 87 (405)
T ss_dssp HHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 467788889999999999998865542 211 1 01222 3 33688999999999999998765
No 369
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=48.33 E-value=1.4e+02 Score=25.99 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 235 LEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 235 l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
.+.++.+++ .|+.|.+..+-.. -....+-.+.+..+.++|+|.|.-
T Consensus 218 ~~~V~~ah~--~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIiT 265 (292)
T 3mz2_A 218 REVIDMLHE--RGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIES 265 (292)
T ss_dssp HHHHHHHHH--TTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHH--CCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEEe
Confidence 467888999 9998654321111 012234456888999999998654
No 370
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=48.30 E-value=12 Score=33.48 Aligned_cols=78 Identities=10% Similarity=0.036 Sum_probs=50.6
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCC---HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGD---LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~---~e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+ -+..+...+
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls---~~Er~~v~~~~v~~~~grvpViaGvg~~-st~~ai~la~~A~~ 115 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGTTGESPTLT---HEEHKRIIELCVEQVAKRVPVVAGAGSN-STSEAVELAKHAEK 115 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCBEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCccccC---HHHHHHHHHHHHHHhCCCCcEEEeCCCC-CHHHHHHHHHHHHh
Confidence 4445667888899999999998865 5555555 466666777665532 235554433221 13 356777888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 116 ~Gadavlv 123 (315)
T 3si9_A 116 AGADAVLV 123 (315)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999875
No 371
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=48.23 E-value=1.1e+02 Score=24.82 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=44.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
+++++.+.++.+.+.|++.+.+.-.++ +. .+.++.+++.++ .+.+.. +...+.+.++...++|.+.+
T Consensus 17 d~~~~~~~~~~~~~~G~~~i~l~~~~~--------~~-~~~i~~i~~~~~~~l~vg~---g~~~~~~~i~~a~~~Gad~V 84 (212)
T 2v82_A 17 TPDEALAHVGAVIDAGFDAVEIPLNSP--------QW-EQSIPAIVDAYGDKALIGA---GTVLKPEQVDALARMGCQLI 84 (212)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEETTST--------TH-HHHHHHHHHHHTTTSEEEE---ECCCSHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh--------hH-HHHHHHHHHhCCCCeEEEe---ccccCHHHHHHHHHcCCCEE
Confidence 345678888888899999888853321 11 244555554332 244422 22347889999999999998
Q ss_pred ee
Q 020304 211 AH 212 (328)
Q Consensus 211 ~~ 212 (328)
..
T Consensus 85 ~~ 86 (212)
T 2v82_A 85 VT 86 (212)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 372
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=48.16 E-value=1.2e+02 Score=26.67 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCC---CCEEeeecccCCCCCCcccCCCCCHHHH
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID---VDILTLGQYLQPTPLHLTVKEYVTPEKF 304 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~---~~~i~i~~~l~PTp~~~~~~~~~~~~~~ 304 (328)
...++.+++++.+++ .|.. --+|+ ..+.+++.+.+..++..+ +..+.+ +|- ++. .. . .
T Consensus 155 ~~~~e~~~al~~l~~--~Gki----r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~-~~~---l~~----~~--~--~ 216 (346)
T 1lqa_A 155 VSLLDTLDALAEYQR--AGKI----RYIGVSNETAFGVMRYLHLADKHDLPRIVTIQN-PYS---LLN----RS--F--E 216 (346)
T ss_dssp SCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHHHHHHHTCCCCCEEEE-ECB---TTB----CT--H--H
T ss_pred CCHHHHHHHHHHHHH--cCCe----EEEEecCCCHHHHHHHHHHHHHcCCCCceEEec-cCC---hhh----ch--h--H
Confidence 357899999999999 8974 24677 888888888777776544 444443 232 221 11 1 2
Q ss_pred HHHHHHHHhcCCceeeeccccc
Q 020304 305 DFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 305 ~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
..+...+++.|+..++.+|+.+
T Consensus 217 ~~l~~~~~~~gi~v~a~spL~~ 238 (346)
T 1lqa_A 217 VGLAEVSQYEGVELLAYSCLGF 238 (346)
T ss_dssp HHHHHHHHHHCCEEEEECTTGG
T ss_pred HHHHHHHHHcCCeEEEecchhh
Confidence 4577899999999999999874
No 373
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=47.92 E-value=71 Score=26.19 Aligned_cols=73 Identities=16% Similarity=0.042 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCC-CCCc-HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDI-PDGG-SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l-~~~~-~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+++..+.+.|+..+.++....+.- .+.. ...-.+.++.+++.. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 130 ~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia--~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIA--EGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEE--ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEE--ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 345667788998775431110000 1110 122345777777764 566543 455558999999999999999886
No 374
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=47.64 E-value=69 Score=27.32 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=44.3
Q ss_pred CcEEEEEeccCCCCC-----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHh
Q 020304 148 VDYIVLTSVDRDDIP-----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQR 222 (328)
Q Consensus 148 ~~~i~l~gg~~~~l~-----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~ 222 (328)
+..|.+.+.++. +. ....+.+.++-+.+.+...++.+++ .++ ++.+.+..++++|.|.+-.|- .+++
T Consensus 157 vD~VlvMsV~PG-fgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V--DGG-I~~~ti~~~~~aGAD~~V~GS----aIf~ 228 (246)
T 3inp_A 157 IDRVLIMSVNPG-FGGQKFIPAMLDKAKEISKWISSTDRDILLEI--DGG-VNPYNIAEIAVCGVNAFVAGS----AIFN 228 (246)
T ss_dssp CSEEEEECSCTT-C--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE--ESS-CCTTTHHHHHTTTCCEEEESH----HHHT
T ss_pred CCEEEEeeecCC-CCCcccchHHHHHHHHHHHHHHhcCCCeeEEE--ECC-cCHHHHHHHHHcCCCEEEEeh----HHhC
Confidence 566666555532 21 1112344443333333444566654 344 378899999999999988772 3333
Q ss_pred hhcCCCCCHHHHHHHHHH
Q 020304 223 IVRDPRAGYEQSLEVLKH 240 (328)
Q Consensus 223 ~~~~~~~~~~~~l~~i~~ 240 (328)
..++++.++.++.
T Consensus 229 -----a~dp~~~i~~l~~ 241 (246)
T 3inp_A 229 -----SDSYKQTIDKMRD 241 (246)
T ss_dssp -----SSCHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHH
Confidence 3356655555543
No 375
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=47.54 E-value=12 Score=33.37 Aligned_cols=78 Identities=10% Similarity=0.073 Sum_probs=50.7
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCC---HHHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGD---LRAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~---~e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+. ...+.+.+.+... -+ -+..+...+
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~A~~ 101 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANFSEQFAIT---DDERDVLTRTILEHVAGRVPVIVTTSHY-STQVCAARSLRAQQ 101 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCcccCC---HHHHHHHHHHHHHHhCCCCcEEEecCCc-hHHHHHHHHHHHHH
Confidence 3444567888888999999998855 5655565 46666677766553 2345665443222 13 356777788
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 102 ~Gadavlv 109 (309)
T 3fkr_A 102 LGAAMVMA 109 (309)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 376
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=47.47 E-value=13 Score=32.99 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=50.1
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~eEr~~v~~~~~~~~~grvpViaGvg~~-~t~~ai~la~~A~~ 105 (301)
T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLT---SEEKVALYRHVVSVVDKRVPVIAGTGSN-NTHASIDLTKKATE 105 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCceEEeCCCCC-CHHHHHHHHHHHHh
Confidence 3444567888888999999998865 4554555 466667777665532 245565443322 133 55666788
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 106 ~Gadavlv 113 (301)
T 1xky_A 106 VGVDAVML 113 (301)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 377
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=47.43 E-value=86 Score=26.32 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=71.8
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et 216 (328)
.+.++++.+.|++.|.+.+... .. ++.+.++++.+++. ++.+.... .+.+.++.+.++|++.+..+...
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~--~~---p~~l~~~i~~~~~~--g~~v~~~v----~t~eea~~a~~~Gad~Ig~~~~g 159 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTAR--QR---PVAVEALLARIHHH--HLLTMADC----SSVDDGLACQRLGADIIGTTMSG 159 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSS--CC---SSCHHHHHHHHHHT--TCEEEEEC----CSHHHHHHHHHTTCSEEECTTTT
T ss_pred HHHHHHHHHcCCCEEEECcccc--CC---HHHHHHHHHHHHHC--CCEEEEeC----CCHHHHHHHHhCCCCEEEEcCcc
Confidence 4567788899999887754331 11 14577888888875 55543321 37888999999999998654322
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcC-CCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 217 VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLG-ESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlg-Et~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
+....+ . ...++ +.++.+++ .+++ +|..=| .|.+++.+. .++|++-+.+..-
T Consensus 160 ~t~~~~-~--~~~~~----~~i~~l~~--~~ip----vIA~GGI~t~~d~~~~----~~~GadgV~VGsa 212 (232)
T 3igs_A 160 YTTPDT-P--EEPDL----PLVKALHD--AGCR----VIAEGRYNSPALAAEA----IRYGAWAVTVGSA 212 (232)
T ss_dssp SSSSSC-C--SSCCH----HHHHHHHH--TTCC----EEEESCCCSHHHHHHH----HHTTCSEEEECHH
T ss_pred CCCCCC-C--CCCCH----HHHHHHHh--cCCc----EEEECCCCCHHHHHHH----HHcCCCEEEEehH
Confidence 111001 0 12233 45556666 4554 233224 367776554 4569998877543
No 378
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=47.35 E-value=1.1e+02 Score=24.84 Aligned_cols=126 Identities=13% Similarity=0.219 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhh
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et 216 (328)
.+.++.+.+.|++.+.+...... -++ +.+.++++.+++.+|+..+.. .. .+.+.+..+.++|++.+.++.-.
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~-~p~---~~~~~~i~~~~~~~~~~~v~~-~~---~t~~e~~~~~~~G~d~i~~~~~g 149 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQ-RPK---ETLDELVSYIRTHAPNVEIMA-DI---ATVEEAKNAARLGFDYIGTTLHG 149 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSC-CSS---SCHHHHHHHHHHHCTTSEEEE-EC---SSHHHHHHHHHTTCSEEECTTTT
T ss_pred HHHHHHHHhCCCCEEEEeeeccc-Ccc---cCHHHHHHHHHHhCCCceEEe-cC---CCHHHHHHHHHcCCCEEEeCCCc
Confidence 45677778899998887643311 110 346788999998877766643 21 36677888999999988654321
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CC-CHHHHHHHHHHHHhCCCCEEeeec
Q 020304 217 VKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gE-t~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.. ..-+ ........++.++.+++. .+++ ++.- |= |.+++.+.+ +.|++.+.+..
T Consensus 150 ~t---~~~~-~~~~~~~~~~~~~~~~~~-~~ip-----via~GGI~~~~~~~~~~----~~Gad~v~vG~ 205 (223)
T 1y0e_A 150 YT---SYTQ-GQLLYQNDFQFLKDVLQS-VDAK-----VIAEGNVITPDMYKRVM----DLGVHCSVVGG 205 (223)
T ss_dssp SS---TTST-TCCTTHHHHHHHHHHHHH-CCSE-----EEEESSCCSHHHHHHHH----HTTCSEEEECH
T ss_pred Cc---CCCC-CCCCCcccHHHHHHHHhh-CCCC-----EEEecCCCCHHHHHHHH----HcCCCEEEECh
Confidence 11 0000 011123345666666652 2444 2223 54 777766544 46899887753
No 379
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=47.27 E-value=11 Score=32.49 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCH------HHHHHHHHHHHh
Q 020304 240 HAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTP------EKFDFWKAYGES 313 (328)
Q Consensus 240 ~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~------~~~~~l~~~~~~ 313 (328)
+|++ .|+.. ..|+....+.+.+++++..++|+..+++|.|. |.........+.. ..+....+...+
T Consensus 31 wAk~--rgl~r----~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS--tENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~ 102 (253)
T 3sgv_B 31 WAKK--QGKIR----AFGHKAGAKSVRRAVSFAANNGIEALTLYAFS--SENWNRPAQEVSALMELFVWALDSEVKSLHR 102 (253)
T ss_dssp HHHH--TTCCH----HHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-------------CHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHH--CCCCH----HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc--hhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 56552 24554455677788888888888888887665 2111001111110 112222233456
Q ss_pred cCCceeeecccccc
Q 020304 314 IGFRYVASGPLVSW 327 (328)
Q Consensus 314 ~G~~~~~~g~~~~~ 327 (328)
.|++.-.+|...+|
T Consensus 103 ~~vrvr~iGd~~~L 116 (253)
T 3sgv_B 103 HNVRLRIIGDTSRF 116 (253)
T ss_dssp TTCEEEEESCGGGS
T ss_pred CCeEEEEEeehhhC
Confidence 78888888866553
No 380
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=47.19 E-value=23 Score=34.33 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCC-C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPL-H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~-~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+...+.+.++.|+++|++.|.+.+... |... + ..+.+ .=+++++.++.+.+++.|++.+.
T Consensus 169 ~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~Vil 238 (585)
T 1wzl_A 169 GGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIIL 238 (585)
T ss_dssp CCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45788888889999999999988865441 2111 1 11222 33689999999999999999864
No 381
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=47.06 E-value=75 Score=29.54 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCHHHHHHHHHcCCcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~-t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
+.+.+.++.+.+.|+..|.|-....-.. +..+.++++.+++.. ++.+.+. .++.-+--.-.-.-.++|++.+..
T Consensus 180 ~~~~~v~~~~~~~Ga~~i~l~DTvG~~~----P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ 254 (423)
T 3ivs_A 180 VDLLSLYKAVDKIGVNRVGIADTVGCAT----PRQVYDLIRTLRGVV-SCDIECHFHNDTGMAIANAYCALEAGATHIDT 254 (423)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEETTSCCC----HHHHHHHHHHHHHHC-SSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCccccCCccCcCC----HHHHHHHHHHHHhhc-CCeEEEEECCCCchHHHHHHHHHHhCCCEEEE
Confidence 3445666666677777766643222111 466777777777653 3444332 232222222222233567777654
No 382
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.95 E-value=1.3e+02 Score=27.73 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
+.-..++..+++.+|++.+.+-.. +++..+.|.++|++.+..
T Consensus 80 ~~n~~i~~~ar~~~p~~~Iiara~----~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 80 QTNLQLTEMVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES----SHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEEC
Confidence 556667888888888888765443 688999999999998753
No 383
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=46.80 E-value=32 Score=29.96 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-C---------------
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-G--------------- 259 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-g--------------- 259 (328)
++.++.++++|++.+-+..... .. .. ..+.+++.+ .+.+ .|+.+.+.- .+. +
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~~---~~-~~--~~~~~~~~~---~l~~--~GL~v~~~~-~~~~~~~~~~p~~~~~~~~~ 99 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYGK---GA-IG--GVPMMDFKK---MAED--AGLKIISSH-VNPVDTSISDPFKAMIFKYS 99 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEET---TE-ET--TEEHHHHHH---HHHH--TTCEEEEEE-CCCBCTTCSSTTTTBCCSCC
T ss_pred HHHHHHHHHcCCCEEEeccccC---cc-cC--CCCHHHHHH---HHHH--cCCeEEEEe-cccccccccCcccccccccc
Confidence 6899999999999988743110 00 11 234444433 4557 999864321 111 0
Q ss_pred -----CCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCc
Q 020304 260 -----ESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFR 317 (328)
Q Consensus 260 -----Et~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~ 317 (328)
+..+.+.+.++.++++|+..+.+. .. |.... ...-....+.+.++.+.+.+.|++
T Consensus 100 ~~~~~~~~~~~~~~i~~A~~lG~~~v~~~-~~-~~~~~-~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 100 KEVTPKIMEYWKATAADHAKLGCKYLIQP-MM-PTITT-HDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCSEEEEC-SC-CCCCS-HHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEC-CC-CCCCC-HHHHHHHHHHHHHHHHHHHHCCCc
Confidence 124567888999999999998773 32 21100 000001124466777788899998
No 384
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=46.69 E-value=9.1 Score=33.68 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEeechh--hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe-EEEeEEEEcC--------CCHHH
Q 020304 196 LRAVETLVHSGLDVFAHNIE--TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI-TKSSIMLGLG--------ESDDD 264 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~e--t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~-v~~~~ivGlg--------Et~e~ 264 (328)
++.++.++++|++.+-+... .....+.... ...+.++..+.-+.+.+ .|+. ++.+.-+.+. +..+.
T Consensus 39 ~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p-~~~~~~~~~~l~~~l~~--~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (305)
T 3obe_A 39 PNGLNRLAKAGYTDLEIFGYREDTGKFGDYNP-KNTTFIASKDYKKMVDD--AGLRISSSHLTPSLREYTKENMPKFDEF 115 (305)
T ss_dssp HHHHHHHHHHTCCEEEECCBCTTTCCBCCC-----CCCBCHHHHHHHHHH--TTCEEEEEBCCCSCCCCCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecccccccccccCcCc-ccccccCHHHHHHHHHH--CCCeEEEeeccccccccchhhHHHHHHH
Q ss_pred HHHHHHHHHhCCCCEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 265 LKEAMADLRSIDVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 265 ~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.+.++.+.++|+..+.+ ....+.... ..-....+.+.++.+++.+.|++..
T Consensus 116 ~~~~i~~A~~lG~~~v~~-~~~~~~~~~--~~~~~~~~~l~~l~~~a~~~Gv~l~ 167 (305)
T 3obe_A 116 WKKATDIHAELGVSCMVQ-PSLPRIENE--DDAKVVSEIFNRAGEITKKAGILWG 167 (305)
T ss_dssp HHHHHHHHHHHTCSEEEE-CCCCCCSSH--HHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHcCCCEEEe-CCCCCCCCH--HHHHHHHHHHHHHHHHHHHcCCEEE
No 385
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=46.62 E-value=1.2e+02 Score=25.95 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE-----EEc-CCCH-------
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM-----LGL-GESD------- 262 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i-----vGl-gEt~------- 262 (328)
++ ++.++++|++.+-+...... ....++..+.-+.+.+ .|+.+.+ .. +.+ ....
T Consensus 40 ~~-l~~~~~~G~~~vEl~~~~~~---------~~~~~~~~~l~~~l~~--~gl~i~~-~~~~~~~~~l~~~d~~~r~~~~ 106 (309)
T 2hk0_A 40 PY-IEKVAKLGFDIIEVAAHHIN---------EYSDAELATIRKSAKD--NGIILTA-GIGPSKTKNLSSEDAAVRAAGK 106 (309)
T ss_dssp HH-HHHHHHTTCSEEEEEHHHHT---------TSCHHHHHHHHHHHHH--TTCEEEE-ECCCCSSSCSSCSCHHHHHHHH
T ss_pred HH-HHHHHHhCCCEEEeccCCcc---------ccchhhHHHHHHHHHH--cCCeEEE-ecCCCCCCCCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCCCEEeeec----ccCCCCC-CcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 263 DDLKEAMADLRSIDVDILTLGQ----YLQPTPL-HLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i~~----~l~PTp~-~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.+.+.++.+.++|+..+.... -..+... .....-....+.+.++.+.+.+.|++..
T Consensus 107 ~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 168 (309)
T 2hk0_A 107 AFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLC 168 (309)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
No 386
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=46.60 E-value=49 Score=28.70 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++++.+.+.|++.+.+++-+...+. .+.+.+.+ +.+..| ++.+.+ .+++.+++.+..+.++|++.+.++
T Consensus 173 ee~~~A~~~Gad~IGv~~r~l~~~~-~dl~~~~~----l~~~v~~~~pvVa--egGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 173 QEADRALKAGAKVIGVNARDLMTLD-VDRDCFAR----IAPGLPSSVIRIA--ESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHHTCSEEEEESBCTTTCC-BCTTHHHH----HGGGSCTTSEEEE--ESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCcccccc-cCHHHHHH----HHHhCcccCEEEE--ECCCCCHHHHHHHHHcCCCEEEEc
Confidence 4455566779998888754422222 12344443 333333 455543 345547999999999999999986
No 387
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=46.20 E-value=88 Score=23.20 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
-.++++.+++..+.+.+.+++.. .+.+......++|++.+... ..+.++..++++.+.+
T Consensus 76 g~~~~~~l~~~~~~~~ii~~s~~--~~~~~~~~~~~~g~~~~l~K--------------p~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 76 GAQVAAAVRSYELPTRVLLISAH--DEPAIVYQALQQGAAGFLLK--------------DSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHHHTTCSCEEEEEESC--CCHHHHHHHHHTTCSEEEET--------------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEEcc--CCHHHHHHHHHcCCCEEEec--------------CCCHHHHHHHHHHHHc
Confidence 35667777777677777665543 25666777778887766541 3455555555555544
No 388
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=46.01 E-value=1e+02 Score=29.16 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=48.4
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
+.+.++.|.++|++.+.++... + ..+.+++.++.+++.++++.+ ++|-.-|.++ ++.+.+
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~-----------g-~~~~~~~~i~~ir~~~p~~~V----i~g~v~t~e~----a~~l~~ 291 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSH-----------G-HSEGVLQRIRETRAAYPHLEI----IGGNVATAEG----ARALIE 291 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSC-----------T-TSHHHHHHHHHHHHHCTTCCE----EEEEECSHHH----HHHHHH
T ss_pred hHHHHHHHHhccCceEEecccc-----------c-cchHHHHHHHHHHHHCCCceE----EEcccCcHHH----HHHHHH
Confidence 5799999999999998876321 1 236778888888886667664 3354455554 466677
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
.|++.+.+
T Consensus 292 aGaD~I~V 299 (496)
T 4fxs_A 292 AGVSAVKV 299 (496)
T ss_dssp HTCSEEEE
T ss_pred hCCCEEEE
Confidence 89998887
No 389
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=45.85 E-value=15 Score=32.44 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..+++
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~A~~~ 94 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPTLT---EEEHKRVVALVAEQAQGRVPVIAGAGSN-NPVEAVRYAQHAQQA 94 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCBEEECCCS-SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCC---HHHHHHHHHHHHHHhCCCCeEEEccCCC-CHHHHHHHHHHHHhc
Confidence 344567888888899999998855 5555565 456666777665532 235554433221 133 556677788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 95 Gadavlv 101 (297)
T 2rfg_A 95 GADAVLC 101 (297)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999876
No 390
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=45.83 E-value=1.6e+02 Score=25.97 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=73.7
Q ss_pred HHHHHHHCCCcEEEEEe--------ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCH----HHHHHHHHcC
Q 020304 139 TAKAIASWGVDYIVLTS--------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL----RAVETLVHSG 206 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~g--------g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~----e~l~~L~~aG 206 (328)
-++.+.+.|++-+.++| |.++ ...-..+.....++.|.+..+++.+.+--+.+..++ +.++.|.++|
T Consensus 30 sA~l~e~aGf~ai~vsG~~~a~~~~G~pD-~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aG 108 (302)
T 3fa4_A 30 SARVALSAGFDALYMTGAGTAASVHGQAD-LGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSG 108 (302)
T ss_dssp HHHHHHTTTCSCEEECHHHHHHHHHSCCS-SSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCcHHHHHHHcCCCC-CCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 34556678999888865 3332 211124666666667765434555554322222243 5678889999
Q ss_pred CcEEeechhhHHHHHhhh-cCCCCCHHHHHHHHHHHHHhC--CCCeEEEeEEEEcCC-----CHHHHHHHHHHHHhCCCC
Q 020304 207 LDVFAHNIETVKRLQRIV-RDPRAGYEQSLEVLKHAKLSK--KGLITKSSIMLGLGE-----SDDDLKEAMADLRSIDVD 278 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~--~Gi~v~~~~ivGlgE-----t~e~~~~~l~~l~~l~~~ 278 (328)
+..+.+-.++..+-.... .+.-.+.++..+.|+.+++.. .|-.+ +|+.=.| ..++-.+-++...+.|.|
T Consensus 109 aagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~---~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD 185 (302)
T 3fa4_A 109 VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDI---VVIARTDSLQTHGYEESVARLRAARDAGAD 185 (302)
T ss_dssp CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCC---EEEEEECCHHHHCHHHHHHHHHHHHTTTCS
T ss_pred CcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCE---EEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 999988555432211000 011246677777666665411 12221 2222222 334444455555677888
Q ss_pred EEee
Q 020304 279 ILTL 282 (328)
Q Consensus 279 ~i~i 282 (328)
.+.+
T Consensus 186 ~ifi 189 (302)
T 3fa4_A 186 VGFL 189 (302)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8766
No 391
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.80 E-value=12 Score=32.88 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++...+.. ..+.+.+.+... -+. +..+..++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~a~~ 94 (291)
T 3tak_A 19 VDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLS---MEEHTQVIKEIIRVANKRIPIIAGTGAN-STREAIELTKAAKD 94 (291)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccccccCC---HHHHHHHHHHHHHHhCCCCeEEEeCCCC-CHHHHHHHHHHHHh
Confidence 3445567888888899999998865 5544555 466667777765532 235554433221 133 56677888
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 95 ~Gadavlv 102 (291)
T 3tak_A 95 LGADAALL 102 (291)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999875
No 392
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=45.74 E-value=1.4e+02 Score=25.20 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHCCCc-EEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~-~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~-~e~l~~L~~aG~~ 208 (328)
++.-....++.+.+.|.. .+++++.++ +.++.+++..|++.+..+. .....+ .+.+..++..|++
T Consensus 124 ~~~~~~~v~~~l~~~~~~~~v~i~Sf~~------------~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (258)
T 2o55_A 124 ESGDHQRLLLLVEKYHMQERVDYCSFHH------------EALAHLKALCPDVKITYLFNYMGQPTPLDFVEQACYGDAN 191 (258)
T ss_dssp TSSHHHHHHHHHHTTTCGGGEEEEESSH------------HHHHHHHHHCTTCEEEEECCTTSCCCCTTHHHHHHHTTCS
T ss_pred chHHHHHHHHHHHHcCCCCCEEEEeCCH------------HHHHHHHHHCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCe
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
.+..+...+ --+.++.+++ .|+.|.+..+-++..+.+++...++ +|++.+.
T Consensus 192 ~v~~~~~~~----------------~~~~v~~~~~--~G~~v~~wTv~~~~n~~~~~~~l~~----~GvdgI~ 242 (258)
T 2o55_A 192 GVSMLFHYL----------------TKEQVCTAHE--KGLSVTVWMPWIFDDSEEDWKKCLE----LQVDLIC 242 (258)
T ss_dssp EEEEEGGGC----------------CHHHHHHHHH--TTCEEEEECCTTCCCCHHHHHHHHH----HTCSEEE
T ss_pred EEecChhhc----------------CHHHHHHHHH--CCCEEEEeeCCCCCCCHHHHHHHHH----cCCCEEE
No 393
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=45.73 E-value=40 Score=31.54 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEeeecccC-CCCCC--------c---------ccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 261 SDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLH--------L---------TVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 261 t~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~--------~---------~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+...+.+.++.|+++|++.|.+.+... +++.. . .+.+ .=+.+++.++.+.+++.|++.+.
T Consensus 21 ~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~Gi~Vil 99 (480)
T 1ud2_A 21 HWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYG 99 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 688899999999999999998875542 12211 0 0222 23689999999999999998753
No 394
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=45.43 E-value=2.1e+02 Score=27.43 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=48.6
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS 274 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~ 274 (328)
+.+.++.|.+||+|.+.+..- .+ ..+..++.++.+++.++.+. +|.|---|.+...+ |.+
T Consensus 282 ~~eR~~aLv~AGvD~iviD~a-----------hG-hs~~v~~~i~~ik~~~p~~~----viaGNVaT~e~a~~----Li~ 341 (556)
T 4af0_A 282 DKDRLKLLAEAGLDVVVLDSS-----------QG-NSVYQIEFIKWIKQTYPKID----VIAGNVVTREQAAQ----LIA 341 (556)
T ss_dssp HHHHHHHHHHTTCCEEEECCS-----------CC-CSHHHHHHHHHHHHHCTTSE----EEEEEECSHHHHHH----HHH
T ss_pred HHHHHHHHHhcCCcEEEEecc-----------cc-ccHHHHHHHHHHHhhCCcce----EEeccccCHHHHHH----HHH
Confidence 468899999999999887421 13 34667899999999777776 56666556665544 445
Q ss_pred CCCCEEee
Q 020304 275 IDVDILTL 282 (328)
Q Consensus 275 l~~~~i~i 282 (328)
.|+|.+-+
T Consensus 342 aGAD~vkV 349 (556)
T 4af0_A 342 AGADGLRI 349 (556)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEee
Confidence 68887776
No 395
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=45.38 E-value=42 Score=33.44 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCC-------------------C--------CcccCC-CCCHHHHHHHHH
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTP-------------------L--------HLTVKE-YVTPEKFDFWKA 309 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp-------------------~--------~~~~~~-~~~~~~~~~l~~ 309 (328)
|-+...+.+.+..|+++|++.|.+.+... ++. . +..+.+ .=+.+++..+.+
T Consensus 249 ~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~y~~idp~~Gt~edfk~LV~ 328 (695)
T 3zss_A 249 HGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVT 328 (695)
T ss_dssp SCCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBCTTSCCTTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCCccccCcccCCHHHHHHHHH
Confidence 45778899999999999999988865542 110 1 111222 225789999999
Q ss_pred HHHhcCCceee
Q 020304 310 YGESIGFRYVA 320 (328)
Q Consensus 310 ~~~~~G~~~~~ 320 (328)
.+.+.|++.+.
T Consensus 329 ~aH~~GI~Vil 339 (695)
T 3zss_A 329 EAGKLGLEIAL 339 (695)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHCCCEEEE
Confidence 99999999874
No 396
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=45.36 E-value=42 Score=28.94 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=42.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+..+.++.+.+.|+++|. |+|..+... .+.+.+.++++ .. + .+.++..+++ +.+-+..|.+.|++.+..+
T Consensus 129 d~~~ale~L~~lG~~rIL-TSG~~~~a~-~g~~~L~~Lv~----~a-~-~i~Im~GgGv-~~~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 129 NPLYTLNNLAELGIARVL-TSGQKSDAL-QGLSKIMELIA----HR-D-APIIMAGAGV-RAENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp CHHHHHHHHHHHTCCEEE-ECTTSSSTT-TTHHHHHHHHT----SS-S-CCEEEEESSC-CTTTHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcCCCEEE-CCCCCCCHH-HHHHHHHHHHH----hh-C-CcEEEecCCc-CHHHHHHHHHcCCCeEeEC
Confidence 446678888899999987 554433332 23455555544 22 2 3444444443 6666666668999988864
No 397
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=45.21 E-value=1.5e+02 Score=25.67 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccCCCCCCcccC--CCCC-----HHHHHHHH
Q 020304 237 VLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVK--EYVT-----PEKFDFWK 308 (328)
Q Consensus 237 ~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~--~~~~-----~~~~~~l~ 308 (328)
+++.+.+ .|. ++|--. |++.+ .+.+..+++.|+..+-.. . +.+|..++.. .+.. .+.+.+..
T Consensus 92 va~aAl~--aGa----~iINdvsg~~~d--~~m~~~~a~~~~~vVlmh-~-~G~p~tm~~~~~~y~dv~~~v~~~l~~~i 161 (280)
T 1eye_A 92 VARAALQ--NGA----QMVNDVSGGRAD--PAMGPLLAEADVPWVLMH-W-RAVSADTPHVPVRYGNVVAEVRADLLASV 161 (280)
T ss_dssp HHHHHHH--TTC----CEEEETTTTSSC--TTHHHHHHHHTCCEEEEC-C-CCSCTTCTTSCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCC----CEEEECCCCCCC--HHHHHHHHHhCCeEEEEc-C-CCCCcchhhcCcchhHHHHHHHHHHHHHH
Confidence 3444444 554 356655 55421 256777888898876662 2 2233322221 1111 33455666
Q ss_pred HHHHhcCCc
Q 020304 309 AYGESIGFR 317 (328)
Q Consensus 309 ~~~~~~G~~ 317 (328)
+.+.+.|++
T Consensus 162 ~~a~~~Gi~ 170 (280)
T 1eye_A 162 ADAVAAGVD 170 (280)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 778888987
No 398
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=45.17 E-value=70 Score=30.38 Aligned_cols=58 Identities=5% Similarity=-0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCEEeeecccC---------CCCCC-----cccC--CC-CCHHHHHHHHHHHHhcCCceee
Q 020304 263 DDLKEAMADLRSIDVDILTLGQYLQ---------PTPLH-----LTVK--EY-VTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i~~~l~---------PTp~~-----~~~~--~~-~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+.+.+.++.|+++|++.|.+.+... +.+.. ..+. +. =+.+++..+.+.+++.|++.+.
T Consensus 37 ~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~Vil 111 (527)
T 1gcy_A 37 NILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLY 111 (527)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 7788899999999999998876552 21111 1122 22 3688999999999999998764
No 399
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=45.07 E-value=23 Score=34.32 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCC-C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPL-H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~-~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+.+.+.+.++.|+++|++.|.+.+... |... + ..+.+ .=+++++.++.+.+++.|++.+.
T Consensus 172 ~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~Vil 241 (588)
T 1j0h_A 172 GGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVML 241 (588)
T ss_dssp CCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45788888889999999999988865441 2111 1 11222 33689999999999999998764
No 400
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=44.97 E-value=77 Score=29.27 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc--CCCHHHHHHHHHHHHhC
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL--GESDDDLKEAMADLRSI 275 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl--gEt~e~~~~~l~~l~~l 275 (328)
+.+.++.+..+. + .|. ..+|+ .-.++++...++.+.+.
T Consensus 195 G~~~~~~~~~l~---~--~~~-----~avGvNC~~gP~~~~~~l~~l~~~ 234 (406)
T 1lt8_A 195 GVPPGEAAVRLV---K--AGA-----SIIGVNCHFDPTISLKTVKLMKEG 234 (406)
T ss_dssp CCCHHHHHHHHH---T--TTC-----SEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhh---c--CCC-----CEEEecCCCCHHHHHHHHHHHHHh
Confidence 567776666553 3 453 24666 34577788777777643
No 401
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=44.93 E-value=11 Score=33.62 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~-~~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+. ...+.+.+.+... -+. +..+...++
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~a~~~ 105 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGTNAEAFLLT---REERAQLIATARKAVGPDFPIMAGVGAH-STRQVLEHINDASVA 105 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSC---HHHHHHHHHHHHHHHCTTSCEEEECCCS-SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCC-CHHHHHHHHHHHHHc
Confidence 344567888888999999998865 5655565 46666677766553 2345665433221 133 566777788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 106 Gadavlv 112 (318)
T 3qfe_A 106 GANYVLV 112 (318)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998765
No 402
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=44.87 E-value=15 Score=32.57 Aligned_cols=79 Identities=9% Similarity=0.007 Sum_probs=49.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEE--EeCCCCCCHHHHHHHHHc
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVEC--LTSDFRGDLRAVETLVHS 205 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~--~t~~~~~~~e~l~~L~~a 205 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+ .++...-.-+..+...++
T Consensus 22 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls---~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~ 98 (300)
T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLG---TAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKL 98 (300)
T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCC---HHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCccccC---HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3445567888888999999887754 5655565 455666676665532 2333333 333211123667777888
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 99 Gadavlv 105 (300)
T 3eb2_A 99 GADGILA 105 (300)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998875
No 403
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=44.42 E-value=54 Score=27.59 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCcEEEEE--eccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLT--SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~--gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++++.+.+.|++.+.++ |-+...... . .. .++++.+++. ++.+. ..+++.+++.+..+.++|++.+.++
T Consensus 139 ~eea~~a~~~Gad~Ig~~~~g~t~~~~~~-~-~~-~~li~~l~~~--~ipvI--A~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 139 VNEGISCHQKGIEFIGTTLSGYTGPITPV-E-PD-LAMVTQLSHA--GCRVI--AEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSSSCCCS-S-CC-HHHHHHHHTT--TCCEE--EESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEecCccCCCCCcCC-C-CC-HHHHHHHHHc--CCCEE--EECCCCCHHHHHHHHHcCCCEEEEc
Confidence 567778888999988542 111110010 1 11 2566666654 55553 3455558999999999999999987
No 404
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=44.35 E-value=1.3e+02 Score=26.91 Aligned_cols=127 Identities=24% Similarity=0.211 Sum_probs=72.4
Q ss_pred HHHHHHHHHC--CCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~--G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
.+.++.+.+. |++-+.+..... ....+.+.++.+++..|++.+.+-+ ..+.+.++.+.++|+|.+.++.
T Consensus 120 ~~~~~~l~~~~~g~~~i~i~~~~g------~~~~~~~~i~~lr~~~~~~~vi~g~---v~t~e~A~~a~~aGaD~I~v~~ 190 (351)
T 2c6q_A 120 FEQLEQILEAIPQVKYICLDVANG------YSEHFVEFVKDVRKRFPQHTIMAGN---VVTGEMVEELILSGADIIKVGI 190 (351)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCT------TBHHHHHHHHHHHHHCTTSEEEEEE---ECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHhccCCCCEEEEEecCC------CcHHHHHHHHHHHHhcCCCeEEEEe---CCCHHHHHHHHHhCCCEEEECC
Confidence 3455555554 788666642111 1256788999999987777664311 2478999999999999996643
Q ss_pred hhH----HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 215 ETV----KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 215 et~----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
... .+...... .-+..-..++.+.+.+ .+++ +|. |=--|..|+.+.+ .+|++.+.+..
T Consensus 191 g~G~~~~~r~~~g~~--~p~~~~l~~v~~~~~~--~~ip----vIa~GGI~~g~di~kAl----alGA~~V~vG~ 253 (351)
T 2c6q_A 191 GPGSVCTTRKKTGVG--YPQLSAVMECADAAHG--LKGH----IISDGGCSCPGDVAKAF----GAGADFVMLGG 253 (351)
T ss_dssp SCSTTBCHHHHHCBC--CCHHHHHHHHHHHHHH--TTCE----EEEESCCCSHHHHHHHH----HTTCSEEEEST
T ss_pred CCCcCcCccccCCCC--ccHHHHHHHHHHHHhh--cCCc----EEEeCCCCCHHHHHHHH----HcCCCceeccH
Confidence 110 12111111 1133334444444445 5665 343 2124566665443 57899887754
No 405
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=44.15 E-value=24 Score=31.66 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=39.6
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
..+.++.|+++|++.+.+.+- .++. +...+.+..+++++.+++ .|++|..++-
T Consensus 29 ~~d~~~ilk~~G~N~VRi~~w-~~P~-----~g~~~~~~~~~~~~~A~~--~GlkV~ld~H 81 (332)
T 1hjs_A 29 AQPLENILAANGVNTVRQRVW-VNPA-----DGNYNLDYNIAIAKRAKA--AGLGVYIDFH 81 (332)
T ss_dssp BCCHHHHHHHTTCCEEEEEEC-SSCT-----TCTTSHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred cccHHHHHHHCCCCEEEEeee-eCCC-----CCcCCHHHHHHHHHHHHH--CCCEEEEEec
Confidence 357889999999999887531 0101 124578999999999999 9999877753
No 406
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=44.14 E-value=1.3e+02 Score=24.52 Aligned_cols=68 Identities=7% Similarity=-0.035 Sum_probs=37.4
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.++.+.+.|++.+.+.--+. .......+.++++.+++.. .++.+.+ + +.++.+.++|++.+.++
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~v~v~v--~------~~~~~a~~~gad~v~l~ 101 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGG---DALTGEARIKFAEKAQAACREAGVPFIV--N------DDVELALNLKADGIHIG 101 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCST---TCCCHHHHHHHHHHHHHHHHHHTCCEEE--E------SCHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEecCCC---CHhHHHHHHHHHHHHHHHHHHcCCeEEE--c------CHHHHHHHcCCCEEEEC
Confidence 67888899999999887752221 1111200134444333211 1344432 2 23457788899998775
Q ss_pred h
Q 020304 214 I 214 (328)
Q Consensus 214 ~ 214 (328)
.
T Consensus 102 ~ 102 (227)
T 2tps_A 102 Q 102 (227)
T ss_dssp T
T ss_pred C
Confidence 3
No 407
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=44.14 E-value=14 Score=32.76 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..+++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~eEr~~vi~~~~~~~~grvpViaGvg~~-st~~ai~la~~A~~~ 106 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGTTGESPTVN---EDEREKLVSRTLEIVDGKIPVIVGAGTN-STEKTLKLVKQAEKL 106 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCC---HHHHHHHHHHHHHHhCCCCeEEEcCCCc-cHHHHHHHHHHHHhc
Confidence 344567888888899999998865 5655565 456666777665532 235554433322 134 456667778
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 107 Gadavlv 113 (306)
T 1o5k_A 107 GANGVLV 113 (306)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 408
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=44.10 E-value=1.4e+02 Score=24.94 Aligned_cols=128 Identities=13% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHCCCcEEEE--Eecc-CCCCCCCcHHHHHHHHHHHHHhCCCcEE--EEEeCCCCCCHHHHHHHHHcC
Q 020304 132 DPMEPENTAKAIASWGVDYIVL--TSVD-RDDIPDGGSGHFARTVKAMKKQKPDIMV--ECLTSDFRGDLRAVETLVHSG 206 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l--~gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~i--~~~t~~~~~~~e~l~~L~~aG 206 (328)
+...+.++++.+.+.|++.+++ ..|+ .|.+. .=.++++.+++..|+..+ +..+++ ....++.+++
T Consensus 16 D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t-----~G~~~v~~lr~~~p~~~~dvhLmv~d---p~~~i~~~~~-- 85 (227)
T 1tqx_A 16 NISKLAEETQRMESLGAEWIHLDVMDMHFVPNLS-----FGPPVINNLKKYTKSIFFDVHLMVEY---PEKYVPLLKT-- 85 (227)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBC-----CCHHHHHHHGGGCSSCEEEEEEESSC---GGGGGGGCTT--
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchh-----cCHHHHHHHHHhCCCCcEEEEEEEcC---HHHHHHHHHh--
Confidence 3345678888888889987644 3333 22232 114678888887655444 444432 1245566666
Q ss_pred CcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCC-CCEEeeecc
Q 020304 207 LDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSID-VDILTLGQY 285 (328)
Q Consensus 207 ~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~-~~~i~i~~~ 285 (328)
.|.+.+..|+.+ .+..+.++..+.+++ .|+.+...+ . ..|+.+ .++.+.++| +|.+-++ -
T Consensus 86 Ad~itvH~ea~~----------~~~~~~i~~~~~i~~--~G~k~gval--n-p~tp~~---~~~~~l~~g~~D~Vlvm-s 146 (227)
T 1tqx_A 86 SNQLTFHFEALN----------EDTERCIQLAKEIRD--NNLWCGISI--K-PKTDVQ---KLVPILDTNLINTVLVM-T 146 (227)
T ss_dssp SSEEEEEGGGGT----------TCHHHHHHHHHHHHT--TTCEEEEEE--C-TTSCGG---GGHHHHTTTCCSEEEEE-S
T ss_pred CCEEEEeecCCc----------cCHHHHHHHHHHHHH--cCCeEEEEe--C-CCCcHH---HHHHHhhcCCcCEEEEe-e
Confidence 788888776521 133444443337788 898754432 3 334432 334445565 8888764 3
Q ss_pred cCC
Q 020304 286 LQP 288 (328)
Q Consensus 286 l~P 288 (328)
+.|
T Consensus 147 V~p 149 (227)
T 1tqx_A 147 VEP 149 (227)
T ss_dssp SCT
T ss_pred ecc
Confidence 335
No 409
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=44.06 E-value=33 Score=30.44 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+...+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+.. . +. +..+..++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls---~eEr~~vi~~~~~~~~grvpViaGvg~-s-t~~ai~la~~A~~ 104 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALT---IEEAKQVATRVTELVNGRATVVAGIGY-S-VDTAIELGKSAID 104 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSEEEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcccCChhhCC---HHHHHHHHHHHHHHhCCCCeEEecCCc-C-HHHHHHHHHHHHH
Confidence 4445567888889999999988754 5655565 466667777766532 34666554443 2 44 55666778
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 105 ~Gadavlv 112 (314)
T 3d0c_A 105 SGADCVMI 112 (314)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998875
No 410
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=44.04 E-value=1.9e+02 Score=26.42 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=78.6
Q ss_pred chHHHHHHHHHCCCcEEEE--------EeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHH
Q 020304 135 EPENTAKAIASWGVDYIVL--------TSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVET 201 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l--------~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~ 201 (328)
+..+.++++.+.|++.+.+ -.|.. ....+.+.-.+.++++++.. +++.+.+-.|.. .+. +.++.
T Consensus 159 ~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~--~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~-~~~~~A~~~~~~ 235 (410)
T 3dip_A 159 DAGVLAESLVAEGYAAMKIWPFDDFASITPHH--ISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSL-WGTHAAARICNA 235 (410)
T ss_dssp CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTC--CCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTC-BCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEECCccCccccccCc--CCHHHHHHHHHHHHHHHHHcCCCceEEEECCCC-CCHHHHHHHHHH
Confidence 3466777888899999988 22211 11112356678888888865 466665544443 353 23456
Q ss_pred HHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 202 LVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 202 L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
|.+.|+..+--- + +. ..+++ .++.+++. .++++. .+|+..+..+..+.++.-.++.+.
T Consensus 236 L~~~~i~~iEqP------~---~~--~~~~~----~~~~l~~~-~~iPIa------~dE~~~~~~~~~~~l~~~~~d~v~ 293 (410)
T 3dip_A 236 LADYGVLWVEDP------I---AK--MDNIP----AVADLRRQ-TRAPIC------GGENLAGTRRFHEMLCADAIDFVM 293 (410)
T ss_dssp GGGGTCSEEECC------B---SC--TTCHH----HHHHHHHH-HCCCEE------ECTTCCSHHHHHHHHHTTCCSEEE
T ss_pred HHhcCCCEEECC------C---CC--cccHH----HHHHHHhh-CCCCEE------ecCCcCCHHHHHHHHHcCCCCeEe
Confidence 666666554310 0 11 12333 22333331 344422 245444444444455555567665
Q ss_pred eecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeee
Q 020304 282 LGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVAS 321 (328)
Q Consensus 282 i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 321 (328)
+- ++.. .. ..+..++.++|++.|+..+.-
T Consensus 294 ~k----~~~~-----GG--it~~~~ia~~A~~~gi~~~~h 322 (410)
T 3dip_A 294 LD----LTWC-----GG--LSEGRKIAALAETHARPLAPH 322 (410)
T ss_dssp EC----TTTS-----SC--HHHHHHHHHHHHHTTCCEEEC
T ss_pred ec----cccc-----CC--HHHHHHHHHHHHHcCCEEeee
Confidence 52 2221 12 334566777788888877644
No 411
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=43.99 E-value=1.8e+02 Score=26.11 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHcCCcEEeechh---hHHHHH----hhhc-CCCCCHHH----HHHHHHHHHHhC-CCCeEEEeEEEE-c---C-
Q 020304 198 AVETLVHSGLDVFAHNIE---TVKRLQ----RIVR-DPRAGYEQ----SLEVLKHAKLSK-KGLITKSSIMLG-L---G- 259 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~e---t~~~~~----~~~~-~~~~~~~~----~l~~i~~~~~~~-~Gi~v~~~~ivG-l---g- 259 (328)
.++..+++|+|.|-++.- .++.+. +.-. .-+.+.+. .+++++.+++.. .++.+..-+=.. + |
T Consensus 163 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~ 242 (363)
T 3l5l_A 163 AARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDE 242 (363)
T ss_dssp HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHH
T ss_pred HHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCC
Confidence 355667899999886431 122221 1000 01234554 366777777633 234333332221 1 3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.+.++..+.++.+.+.|++.+.+..
T Consensus 243 ~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 243 QTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5678888999999999999998853
No 412
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=43.97 E-value=1.7e+02 Score=25.79 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcC-CCCCHHHHHHHHHHHHHhCC
Q 020304 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD-PRAGYEQSLEVLKHAKLSKK 246 (328)
Q Consensus 168 ~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~ 246 (328)
.-..-++.+++.. + .+.+.+ . .|.-..+.+.++|++.+.++--++.-.. -..+ ...+.++.+..++.+.+. .
T Consensus 16 ~~a~~lr~l~~~~-~-~i~~~~-a--yD~~sA~l~e~aG~dai~vs~~s~a~~~-G~pD~~~vt~~em~~~~~~I~r~-~ 88 (305)
T 3ih1_A 16 ELANRFRALVEAN-E-ILQIPG-A--HDAMAALVARNTGFLALYLSGAAYTASK-GLPDLGIVTSTEVAERARDLVRA-T 88 (305)
T ss_dssp HHHHHHHHHHHSS-S-CEEEEB-C--SSHHHHHHHHHTTCSCEEECHHHHHHHH-TCCSSSCSCHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCC-C-cEEEec-C--cCHHHHHHHHHcCCCEEEECcHHHHHhC-CCCCCCcCCHHHHHHHHHHHHHh-c
Confidence 3344555565542 2 333322 2 3778888899999999998763433222 1111 135899999888877542 4
Q ss_pred CCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC-CCCCcccCCCCCHHHH-HHHHHHHHhcCCc
Q 020304 247 GLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP-TPLHLTVKEYVTPEKF-DFWKAYGESIGFR 317 (328)
Q Consensus 247 Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P-Tp~~~~~~~~~~~~~~-~~l~~~~~~~G~~ 317 (328)
.+++.+++=.|+|. .+++.++++.+.+.|+.-+.+=--..| ...+.....-++.+++ ++++..... |..
T Consensus 89 ~~pviaD~d~Gyg~-~~~v~~~v~~l~~aGaagv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~~A-~~~ 159 (305)
T 3ih1_A 89 DLPVLVDIDTGFGG-VLNVARTAVEMVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEV-APS 159 (305)
T ss_dssp CCCEEEECTTCSSS-HHHHHHHHHHHHHTTCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHHH-CTT
T ss_pred CCCEEEECCCCCCC-HHHHHHHHHHHHHhCCcEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHHHc-CCC
Confidence 66788888888865 788999999999999998887322223 2222222334455443 445444333 443
No 413
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=43.82 E-value=38 Score=31.42 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCC--------Cc-----ccC-CCCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPL--------HL-----TVK-EYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~--------~~-----~~~-~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+-+...+.+.++.|+++|++.|.+.+... |+.. +. .+. ..=+.+++..+.+.+.+.|++.+.
T Consensus 26 ~G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi~ 102 (449)
T 3dhu_A 26 AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVML 102 (449)
T ss_dssp SCSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45788899999999999999998865541 1110 11 111 122578899999999999999875
No 414
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=43.77 E-value=1e+02 Score=27.94 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=51.9
Q ss_pred chHHHHHHHHHCCCcEEEEEeccC--CCC-----C--CC------cHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDR--DDI-----P--DG------GSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRA 198 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~--~~l-----~--~~------~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~ 198 (328)
++.+.++.+.+.|++.+.+++... +.. . .+ ..+.-.++++.+++..+ ++.+. .++++.+.+.
T Consensus 235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI--~~GGI~s~~d 312 (367)
T 3zwt_A 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII--GVGGVSSGQD 312 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE--EESSCCSHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEE--EECCCCCHHH
Confidence 567788888999999998864321 100 0 01 12345688889988754 46654 3566668777
Q ss_pred HHHHHHcCCcEEeech
Q 020304 199 VETLVHSGLDVFAHNI 214 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~ 214 (328)
+.++.++|.+.+.++-
T Consensus 313 a~~~l~~GAd~V~vgr 328 (367)
T 3zwt_A 313 ALEKIRAGASLVQLYT 328 (367)
T ss_dssp HHHHHHHTCSEEEESH
T ss_pred HHHHHHcCCCEEEECH
Confidence 7777779999998853
No 415
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=43.64 E-value=1.6e+02 Score=25.36 Aligned_cols=88 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i 210 (328)
++.+++...++...+.|++.|--..|-.+.-.. .+...-+.+.+ .+.+.+.+ .+++.+.+.+..|.++|.+++
T Consensus 170 Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT--~edV~lm~~~v---g~~v~VKa--AGGIrt~~~al~mi~aGA~Ri 242 (260)
T 3r12_A 170 LDTEEKIAACVISKLAGAHFVKTSTGFGTGGAT--AEDVHLMKWIV---GDEMGVKA--SGGIRTFEDAVKMIMYGADRI 242 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCC--HHHHHHHHHHH---CTTSEEEE--ESSCCSHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHhCcCEEEcCCCCCCCCCC--HHHHHHHHHHh---CCCceEEE--eCCCCCHHHHHHHHHcCCcee
Q ss_pred ee--chhhHHHHHhhhc
Q 020304 211 AH--NIETVKRLQRIVR 225 (328)
Q Consensus 211 ~~--~~et~~~~~~~~~ 225 (328)
-. +.++++.+.+..+
T Consensus 243 GtS~g~~I~~~~~~~~~ 259 (260)
T 3r12_A 243 GTSSGVKIVQGGEERYG 259 (260)
T ss_dssp EESCHHHHHHHHHHHHC
T ss_pred ecchHHHHHHHHHhccC
No 416
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=43.60 E-value=29 Score=30.44 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 170 ~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++++.+++. +.+.+.++.++.+.+++.+..+.++|++.+.++
T Consensus 187 ~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG 229 (291)
T 3o07_A 187 VSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229 (291)
T ss_dssp HHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred HHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence 3567777776 456665556777778988888889999999884
No 417
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=43.60 E-value=81 Score=28.11 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=72.6
Q ss_pred HHHHHHCCCcEEEEEeccCCCCCCC-----cHHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 140 AKAIASWGVDYIVLTSVDRDDIPDG-----GSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 140 ~~~~~~~G~~~i~l~gg~~~~l~~~-----~~~~l~~li~~ik~~~--~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
++...+.|+..|.+.......++.. -.+++.++++.+++.. +++.+..+ .+. +...++.|.+.|++.+++
T Consensus 193 ~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~-~~g--~~~~l~~l~~~g~d~i~~ 269 (354)
T 3cyv_A 193 LNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLF-TKG--GGQWLEAMAETGCDALGL 269 (354)
T ss_dssp HHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEE-CTT--TTTTHHHHHTTSCSEEEC
T ss_pred HHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEE-CCC--HHHHHHHHHhcCCCEEEe
Confidence 3444567998776642111223311 1244555555555431 12333222 222 346789999999999886
Q ss_pred chhhHHHHHhhhcCCCCCHHHHHHHHH--HHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHh-CCCCEEeeecccCCC
Q 020304 213 NIETVKRLQRIVRDPRAGYEQSLEVLK--HAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRS-IDVDILTLGQYLQPT 289 (328)
Q Consensus 213 ~~et~~~~~~~~~~~~~~~~~~l~~i~--~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~-l~~~~i~i~~~l~PT 289 (328)
.- ..+.++..+.+. .+-. .|+.. .+ +..|.|++.+.++.+.+ ++...-.+ +.|
T Consensus 270 d~-------------~~dl~~~~~~~g~~~~l~--Gn~dp--~~---l~~t~e~i~~~v~~~l~~~g~~~g~I---~~~- 325 (354)
T 3cyv_A 270 DW-------------TTDIADARRRVGNKVALQ--GNMDP--SM---LYAPPARIEEEVATILAGFGHGEGHV---FNL- 325 (354)
T ss_dssp CT-------------TSCHHHHHHHHTTTSEEE--CCBCG--GG---GGSCHHHHHHHHHHHHTTTTTSSCEE---BCB-
T ss_pred CC-------------CCCHHHHHHHhCCCeEEE--ecCCh--HH---hCCCHHHHHHHHHHHHHHhCCCCCeE---Eec-
Confidence 31 123332222221 0111 33332 11 24578888777766654 46532122 112
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcCC
Q 020304 290 PLHLTVKEYVTPEKFDFWKAYGESIGF 316 (328)
Q Consensus 290 p~~~~~~~~~~~~~~~~l~~~~~~~G~ 316 (328)
.+ ...+..+++.+..+.+.+++.|-
T Consensus 326 -g~-gi~~~~p~env~a~v~~v~~~~~ 350 (354)
T 3cyv_A 326 -GH-GIHQDVPPEHAGVFVEAVHRLSE 350 (354)
T ss_dssp -SS-CCCTTSCHHHHHHHHHHHHHHHG
T ss_pred -CC-CCCCCCCHHHHHHHHHHHHHHhH
Confidence 11 13345667777777777776553
No 418
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=43.45 E-value=1.3e+02 Score=25.23 Aligned_cols=71 Identities=11% Similarity=-0.066 Sum_probs=47.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
++++...+....-.|.+-+.+.+ .. ... -.++++.+++...++.+.+ .+++.++|.++.+. +|.|.+.+
T Consensus 139 ~e~~~~~a~~a~~~g~~~VYld~-sG-~~~------~~~~i~~i~~~~~~~Pv~v--GGGI~t~e~a~~~~-~gAD~VVV 207 (228)
T 3vzx_A 139 MDDIVAYARVSELLQLPIFYLEY-SG-VLG------DIEAVKKTKAVLETSTLFY--GGGIKDAETAKQYA-EHADVIVV 207 (228)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC-TT-SCC------CHHHHHHHHHHCSSSEEEE--ESSCCSHHHHHHHH-TTCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEecC-CC-CcC------CHHHHHHHHHhcCCCCEEE--eCCCCCHHHHHHHH-hCCCEEEE
Confidence 45555555555567888888865 22 111 1567778887643566643 45556899999998 79999998
Q ss_pred ch
Q 020304 213 NI 214 (328)
Q Consensus 213 ~~ 214 (328)
|-
T Consensus 208 GS 209 (228)
T 3vzx_A 208 GN 209 (228)
T ss_dssp CT
T ss_pred Ch
Confidence 64
No 419
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=43.44 E-value=53 Score=29.58 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHcCCcEEee----chhhHHHHH-hhhcCC-CC-----CHHHHHHHHHHHHHhCCCCeE
Q 020304 191 DFRGDLRAVETLVHSGLDVFAH----NIETVKRLQ-RIVRDP-RA-----GYEQSLEVLKHAKLSKKGLIT 250 (328)
Q Consensus 191 ~~~~~~e~l~~L~~aG~~~i~~----~~et~~~~~-~~~~~~-~~-----~~~~~l~~i~~~~~~~~Gi~v 250 (328)
+...+++++++|++-|+....+ |+-|+.++. ..+... -| =.++..+.|..+++ .|-.|
T Consensus 185 GLHFt~eLl~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MHsE~~~V~~~ta~~in~aka--~G~RV 253 (346)
T 1yy3_A 185 GLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRE--NGGRI 253 (346)
T ss_dssp TTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------CCCEEEEECHHHHHHHHHHHH--TTCCE
T ss_pred CCCCCHHHHHHHHHCCCeEEEEEEeecCCCCCCccccccccCCcccEEEEECHHHHHHHHHHHH--cCCeE
Confidence 3345899999999999887543 777765432 111100 11 13788899999998 88764
No 420
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=43.35 E-value=50 Score=28.83 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=48.5
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHH---HHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRA---VETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~---l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+.+. .+...+
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~a~~ 94 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLN---HDEHADVVMMTLDLADGRIPVIAGTGAN-ATAEAISLTQRFND 94 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCc-cHHHHHHHHHHHHh
Confidence 3445567888888899999998865 5554555 456667777665532 235554433322 24444 455566
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|.|.+.+
T Consensus 95 ~Gadavlv 102 (292)
T 2ojp_A 95 SGIVGCLT 102 (292)
T ss_dssp SSCSEEEE
T ss_pred cCCCEEEE
Confidence 78998765
No 421
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=43.35 E-value=67 Score=29.01 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=50.5
Q ss_pred eEEEEc----CCCHHHHHHHHHHHHhCCCCEEeeecccCC----CCCC--cccC------------CCCCHHHHHHHHHH
Q 020304 253 SIMLGL----GESDDDLKEAMADLRSIDVDILTLGQYLQP----TPLH--LTVK------------EYVTPEKFDFWKAY 310 (328)
Q Consensus 253 ~~ivGl----gEt~e~~~~~l~~l~~l~~~~i~i~~~l~P----Tp~~--~~~~------------~~~~~~~~~~l~~~ 310 (328)
.+|-|. .++.+...++++.+++.|++.+-+..| .| ||.. .+.. -.++.+.+..|++.
T Consensus 21 ~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~-k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~ 99 (349)
T 2wqp_A 21 LIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTH-IVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY 99 (349)
T ss_dssp EEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEEC-CHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeec-ccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence 355544 579999999999999999999998544 35 3422 1110 14678889999999
Q ss_pred HHhcCCceeee
Q 020304 311 GESIGFRYVAS 321 (328)
Q Consensus 311 ~~~~G~~~~~~ 321 (328)
+++.|+.++..
T Consensus 100 ~~~~Gi~~~st 110 (349)
T 2wqp_A 100 VESKGMIFIST 110 (349)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHhCCeEEEe
Confidence 99999998865
No 422
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=43.24 E-value=87 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++++.+.+.|.+.|-++.-+...+. -+.+...++++.+. .++.+.+ -+++.+++.+..+.++|++.+.++
T Consensus 179 ~eEl~~A~~~ga~iIGinnr~l~t~~-~dl~~~~~L~~~ip---~~~~vIa--esGI~t~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 179 EAEMERALKLSSRLLGVNNRNLRSFE-VNLAVSERLAKMAP---SDRLLVG--ESGIFTHEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHTTSCCSEEEEECBCTTTCC-BCTHHHHHHHHHSC---TTSEEEE--ESSCCSHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCC-CChHHHHHHHHhCC---CCCcEEE--ECCCCCHHHHHHHHHcCCCEEEEc
Confidence 45566666788886655432211111 12355555554432 2454433 334458999999999999999986
No 423
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=43.12 E-value=1.5e+02 Score=25.10 Aligned_cols=138 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC---CcEE
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG---LDVF 210 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG---~~~i 210 (328)
..+.+.++++.+.|+++|+++.-.. .+....+++.+.++..+..+|. +....+ ...+++.++.+.++= +...
T Consensus 60 psi~~aL~~l~~~G~~~vvV~Pl~l--~~G~~~~di~~~v~~~~~~~~~--i~~~~p-l~~~~~~~~~l~~~l~~~~~~~ 134 (264)
T 2xwp_A 60 DTPLQALQKLAAQGYQDVAIQSLHI--INGDEYEKIVREVQLLRPLFTR--LTLGVP-LLSSHNDYVQLMQALRQQMPSL 134 (264)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEECCS--SSSHHHHHHHHHHHHHGGGCSE--EEEECC-SSCSHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCcc--cCcHHHHHHHHHHHHHHhhCCc--eEEecC-CCCCHHHHHHHHHHHHHhcccc
Confidence 4566778888999999998875432 1111124444555555555554 433333 333665444444331 1100
Q ss_pred eechhhHHHHHhhhcCCCCCHH-HHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 211 AHNIETVKRLQRIVRDPRAGYE-QSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 211 ~~~~et~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
..+ +.+-=..++..+... .+...-..+++ .|. .+-+|+-|..-.+.+.++.+.+.|+..+.+.+|+
T Consensus 135 --~~~--~~lvl~gHGs~~~~~~~~~~~a~~l~~--~~~----~v~~g~~e~~P~~~~~l~~l~~~G~~~v~v~P~~ 201 (264)
T 2xwp_A 135 --RQT--EKVVFMGHGASHHAFAAYACLDHMMTA--QRF----PARVGAVESYPEVDILIDSLRDEGVTGVHLMPLM 201 (264)
T ss_dssp --CTT--EEEEEEECCCSSGGGHHHHHHHHHHHH--TTC----SEEEEESSSSSCHHHHHHHHHHHTCCEEEEEECS
T ss_pred --CCC--CeEEEEECCCCchhhHHHHHHHHHHHh--hCC----CEEEEEeCCCCCHHHHHHHHHHCCCCEEEEEeee
Confidence 000 000000000111112 22233334455 452 4566774445567888999999999988886655
No 424
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=43.08 E-value=46 Score=27.69 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHHHHHHCCCcEE--EEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 138 NTAKAIASWGVDYI--VLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 138 ~~~~~~~~~G~~~i--~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++++.+.+.|++.+ .+.|.++....... .. .++++.+++. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 144 ~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~-~~-~~~i~~~~~~--~ipvia--~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 144 DEGLVAHQAGIDFVGTTLSGYTPYSRQEAG-PD-VALIEALCKA--GIAVIA--EGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSCCSSS-CC-HHHHHHHHHT--TCCEEE--ESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHcCCCEEeeeccccCCCCcCCCC-CC-HHHHHHHHhC--CCCEEE--ECCCCCHHHHHHHHHCCCCEEEEc
Confidence 45777788999988 45554332110001 11 2456666654 455543 455546999999999999999886
No 425
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=42.97 E-value=81 Score=28.52 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-CcEEee
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAH 212 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~i~~ 212 (328)
++..+.++.+.+.|+..+.+.++....-+. .-.++++.+++.. ++.+. .++.+ +.+.++.+.+.| +|.+.+
T Consensus 250 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----~~~~~~~~i~~~~-~iPvi--~~Ggi-~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 250 LTYTAAAALLNKHRIVYLHIAEVDWDDAPD----TPVSFKRALREAY-QGVLI--YAGRY-NAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCBTTBCCC----CCHHHHHHHHHHC-CSEEE--EESSC-CHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCCC----ccHHHHHHHHHHC-CCcEE--EeCCC-CHHHHHHHHHCCCcceehh
Confidence 345677888899999999988653210011 0125677788775 45553 34555 888888888888 999987
Q ss_pred c
Q 020304 213 N 213 (328)
Q Consensus 213 ~ 213 (328)
+
T Consensus 322 g 322 (365)
T 2gou_A 322 G 322 (365)
T ss_dssp C
T ss_pred c
Confidence 4
No 426
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=42.94 E-value=1.4e+02 Score=24.68 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=54.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc-----C-C
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-----G-L 207 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a-----G-~ 207 (328)
...+.++.+.+.|+..+++++-..+. +...+ .++++.+++.. ++.+.+ +++..+.+.+..+.++ | +
T Consensus 145 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~----~~~i~~l~~~~-~iPvia--~GGI~~~~d~~~~~~~~~~~~G~a 217 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHD----FSLTKKIAIEA-EVKVLA--AGGISSENSLKTAQKVHTETNGLL 217 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHHTCCCC----HHHHHHHHHHH-TCEEEE--ESSCCSHHHHHHHHHHHHHTTTSE
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccccCCcCC----HHHHHHHHHhc-CCcEEE--ECCCCCHHHHHHHHhcccccCCeE
Confidence 45667778888999999998632110 11111 34555555542 456643 4566578888899888 9 9
Q ss_pred cEEeechhhHHHHHhhhcCCCCCHHHHHHH
Q 020304 208 DVFAHNIETVKRLQRIVRDPRAGYEQSLEV 237 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~~~~~~~~~~~l~~ 237 (328)
+.+.++- .+++ ...+.++.++.
T Consensus 218 dgv~vgs----al~~----~~~~~~~~~~~ 239 (241)
T 1qo2_A 218 KGVIVGR----AFLE----GILTVEVMKRY 239 (241)
T ss_dssp EEEEECH----HHHT----TSSCHHHHHHH
T ss_pred eEEEeeH----HHHc----CCCCHHHHHHH
Confidence 9988862 3333 24566655543
No 427
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=42.80 E-value=61 Score=27.13 Aligned_cols=106 Identities=11% Similarity=0.150 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHH-HHHHHHHh
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLE-VLKHAKLS 244 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~-~i~~~~~~ 244 (328)
.+.+.+.++.+++. |+.+.. .++-....-+..|....+|.+-++-.-.. + +. ........++ .+..+++
T Consensus 142 ~~~~~~~l~~L~~~--G~~ial--DdfG~g~s~l~~L~~l~~d~iKiD~~~v~---~-~~-~~~~~~~~l~~i~~~a~~- 211 (250)
T 4f3h_A 142 LRNAQQFLASVSAM--GCKVGL--EQFGSGLDSFQLLAHFQPAFLKLDRSITG---D-IA-SARESQEKIREITSRAQP- 211 (250)
T ss_dssp HHHHHHHHHHHHTT--TCEEEE--EEETSSTHHHHHHTTSCCSEEEECHHHHT---T-TT-TCSHHHHHHHHTHHHHHH-
T ss_pred HHHHHHHHHHHHHC--CCEEEE--eCCCCCchHHHHHhhCCCCEEEECHHHHH---h-Hh-cChhhHHHHHHHHHHHHH-
Confidence 35677778888876 566643 12212456778888888888888632222 1 11 1222333344 4455677
Q ss_pred CCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCCCC
Q 020304 245 KKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQPTP 290 (328)
Q Consensus 245 ~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~PTp 290 (328)
.|+.+ +.---||.++ ++.++++|++.+.=+-|-+|.|
T Consensus 212 -l~~~v----iaeGVEt~~~----~~~l~~~G~~~~QG~~~~~P~p 248 (250)
T 4f3h_A 212 -TGILT----VAEFVADAQS----MSSFFTAGVDYVQGDFVAPTGP 248 (250)
T ss_dssp -HTCEE----EECCCCCHHH----HHHHHHHTCSEECSTTTCCCBS
T ss_pred -cCCEE----EEeccCCHHH----HHHHHHcCCCEEeeccccCCCC
Confidence 78764 3221477765 5667889999876542334544
No 428
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=42.80 E-value=30 Score=33.07 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
-.+.++..+.++.+|+ .||.|..++++.+
T Consensus 89 ~Gt~~dfk~Lv~~aH~--~GI~VilD~V~NH 117 (527)
T 1gcy_A 89 YGSDAQLRQAASALGG--AGVKVLYDVVPNH 117 (527)
T ss_dssp SCCHHHHHHHHHHHHH--TTCEEEEEECCSB
T ss_pred CCCHHHHHHHHHHHHH--CCCEEEEEEeecC
Confidence 3478999999999999 9999999999988
No 429
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=42.67 E-value=13 Score=35.02 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 020304 164 GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKL 243 (328)
Q Consensus 164 ~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~ 243 (328)
++...+.+-+.+|++. |+....++|... .. ...|-+.... .. +... -.+.++..+.++.+|+
T Consensus 47 G~~~gi~~~LdyL~~L--Gv~~I~l~Pi~~-~~------~~~gY~~~dy--~~---idp~----~Gt~~df~~lv~~~h~ 108 (475)
T 2z1k_A 47 GTLWGVAEKLPYLLDL--GVEAIYLNPVFA-ST------ANHRYHTVDY--FQ---VDPI----LGGNEALRHLLEVAHA 108 (475)
T ss_dssp CCHHHHHHTHHHHHHH--TCCEEEECCCEE-ES------STTCCSEEEE--EE---ECGG----GTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhHHHHHc--CCCEEEECCCcC-CC------CCCCcCCCCc--Cc---cCcc----cCCHHHHHHHHHHHHH
Confidence 3456777777888887 444444444321 11 0234332221 00 1111 2368999999999999
Q ss_pred hCCCCeEEEeEEEEc-CCCHHHHHHHH
Q 020304 244 SKKGLITKSSIMLGL-GESDDDLKEAM 269 (328)
Q Consensus 244 ~~~Gi~v~~~~ivGl-gEt~e~~~~~l 269 (328)
.||.|..++++.+ +....-+.+.+
T Consensus 109 --~Gi~VilD~V~NH~~~~~~~f~~~~ 133 (475)
T 2z1k_A 109 --HGVRVILDGVFNHTGRGFFAFQHLM 133 (475)
T ss_dssp --TTCEEEEEECCSBCCTTSHHHHHHH
T ss_pred --CCCEEEEEEecccccCCCHHHHHHH
Confidence 9999999999998 65544454443
No 430
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=42.54 E-value=2.3e+02 Score=29.92 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe-CCCCCCHHHHHHHHHcCCcEEe
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGDLRAVETLVHSGLDVFA 211 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t-~~~~~~~e~l~~L~~aG~~~i~ 211 (328)
++...+.++++.+.|+..+.|-....- + .+..+.++++.+++.. ++.+.+.+ ++.-+.-...-.-.+||++.+-
T Consensus 691 ~~~~~~~a~~~~~~Ga~~i~l~Dt~G~-~---~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD 765 (1150)
T 3hbl_A 691 LEYYVKLAKELEREGFHILAIKDMAGL-L---KPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIID 765 (1150)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTCC-C---CHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHcCCCeeeEcCccCC-C---CHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345688999999999999988543321 2 2588999999999874 55544322 2222233333444478999986
Q ss_pred e
Q 020304 212 H 212 (328)
Q Consensus 212 ~ 212 (328)
.
T Consensus 766 ~ 766 (1150)
T 3hbl_A 766 T 766 (1150)
T ss_dssp E
T ss_pred E
Confidence 4
No 431
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=42.52 E-value=1.6e+02 Score=25.86 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=30.2
Q ss_pred EEEEc-CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCCCcccCCCCC------HHHHHHHHHHHHhcCCceee
Q 020304 254 IMLGL-GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLHLTVKEYVT------PEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 254 ~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~~~~~~~~~------~~~~~~l~~~~~~~G~~~~~ 320 (328)
+|--. |+..+ +.+..+++.++..+-.. . + .+|..++...... .+.+.+..+.+.+.|++.+.
T Consensus 126 iINdVsg~~d~---~m~~v~a~~~~~vVlmh-~-~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~Ii 195 (294)
T 2dqw_A 126 LLNDVTGLRDE---RMVALAARHGVAAVVMH-M-PVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVV 195 (294)
T ss_dssp EEECSSCSCCH---HHHHHHHHHTCEEEEEC-C-SSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEE
T ss_pred EEEECCCCCCh---HHHHHHHHhCCCEEEEc-C-CCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 45545 55333 45666777787665552 2 2 2333222111111 22345555667778876433
No 432
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=42.47 E-value=78 Score=27.71 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred H------HHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCe---EEEeEEEEc-CCCH---
Q 020304 196 L------RAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLI---TKSSIMLGL-GESD--- 262 (328)
Q Consensus 196 ~------e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~---v~~~~ivGl-gEt~--- 262 (328)
+ +.++.++++|++.+-+.......... ..+.++..+.-+.+.+ .|+. +.+ +.++ ....
T Consensus 28 ~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~-----~~~~~~~~~l~~~l~~--~gL~~~~i~~--~~~~~~~~~l~~ 98 (335)
T 2qw5_A 28 DYRRIVVAHIKKLQRFGYSGFEFPIAPGLPENY-----AQDLENYTNLRHYLDS--EGLENVKIST--NVGATRTFDPSS 98 (335)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCCCCGGGH-----HHHHHHHHHHHHHHHH--TTCTTCEEEE--ECCCCSSSCTTC
T ss_pred hccchHHHHHHHHHHhCCCEEEEecCCCccccc-----ccchHHHHHHHHHHHH--CCCCcceeEE--EeccCCCCCCCC
Q ss_pred ----------HHHHHHHHHHHhCCCCEEeeecccCCCCCCcccCC-----------------CCCHHHHHHHHHHHHhcC
Q 020304 263 ----------DDLKEAMADLRSIDVDILTLGQYLQPTPLHLTVKE-----------------YVTPEKFDFWKAYGESIG 315 (328)
Q Consensus 263 ----------e~~~~~l~~l~~l~~~~i~i~~~l~PTp~~~~~~~-----------------~~~~~~~~~l~~~~~~~G 315 (328)
+.+.+.++.++++|+..+ +.+...+......... ..-.+.+.++.+++.+.|
T Consensus 99 ~d~~~r~~~~~~~~~~i~~A~~lG~~~v-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~G 177 (335)
T 2qw5_A 99 NYPEQRQEALEYLKSRVDITAALGGEIM-MGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKK 177 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCSEE-EECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEE-eccccCccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred Cceee
Q 020304 316 FRYVA 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
++...
T Consensus 178 v~l~l 182 (335)
T 2qw5_A 178 VKLAI 182 (335)
T ss_dssp CEEEE
T ss_pred CEEEE
No 433
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=42.36 E-value=23 Score=33.37 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCCCc------ccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLHL------TVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~~------~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+-+...+.+.++.|+++|++.|.+.++.. |+.... .+.+ .=+.+++.++.+.+++.|++.+.
T Consensus 52 ~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~Vil 121 (488)
T 2wc7_A 52 GGDLWGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVL 121 (488)
T ss_dssp CCCHHHHHHTHHHHHHHTCCEEEESCCEEECTTCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 55778888999999999999998865441 221111 1122 22578899999999999999763
No 434
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=42.25 E-value=43 Score=29.35 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=48.6
Q ss_pred chHHHHHHHHHCCCcEEEEEecc-----CC------CCC--------CC--cHHHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 020304 135 EPENTAKAIASWGVDYIVLTSVD-----RD------DIP--------DG--GSGHFARTVKAMKKQKP-DIMVECLTSDF 192 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~-----~~------~l~--------~~--~~~~l~~li~~ik~~~~-~~~i~~~t~~~ 192 (328)
++.+.++.+.+.|++.+.+++.. .+ .+. .+ ..+...++++.+++..+ ++.+. .+++
T Consensus 173 ~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi--~~GG 250 (311)
T 1jub_A 173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQII--GTGG 250 (311)
T ss_dssp HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEE--EESS
T ss_pred HHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEE--EECC
Confidence 44566778888999988775421 00 000 01 02345678888887643 56664 3556
Q ss_pred CCCHHHHHHHHHcCCcEEeech
Q 020304 193 RGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 193 ~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
+.+.+.+.++..+|.+.+.++-
T Consensus 251 I~~~~da~~~l~~GAd~V~vg~ 272 (311)
T 1jub_A 251 IETGQDAFEHLLCGATMLQIGT 272 (311)
T ss_dssp CCSHHHHHHHHHHTCSEEEECH
T ss_pred CCCHHHHHHHHHcCCCEEEEch
Confidence 6677666666688999998853
No 435
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=42.01 E-value=44 Score=29.57 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=52.5
Q ss_pred CCCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHH
Q 020304 130 PPDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLV 203 (328)
Q Consensus 130 ~~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~ 203 (328)
..+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+...
T Consensus 24 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~~Er~~v~~~~~~~~~grvpViaGvg~~-~t~~ai~la~~A~ 99 (311)
T 3h5d_A 24 SINFDAIPALIEHLLAHHTDGILLAGTTAESPTLT---HDEELELFAAVQKVVNGRVPLIAGVGTN-DTRDSIEFVKEVA 99 (311)
T ss_dssp SBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSC---HHHHHHHHHHHHHHSCSSSCEEEECCCS-SHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEeCCCc-CHHHHHHHHHHHH
Confidence 45566778899999999999998865 5555555 466777888777653 345665433222 133 5566777
Q ss_pred HcCC-cEEee
Q 020304 204 HSGL-DVFAH 212 (328)
Q Consensus 204 ~aG~-~~i~~ 212 (328)
++|. |.+.+
T Consensus 100 ~~Ga~davlv 109 (311)
T 3h5d_A 100 EFGGFAAGLA 109 (311)
T ss_dssp HSCCCSEEEE
T ss_pred hcCCCcEEEE
Confidence 7785 88765
No 436
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=41.98 E-value=1.6e+02 Score=24.93 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHH---HHHhCCCcEEEEEeCCCCCCHHHHHHHHH--------
Q 020304 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKA---MKKQKPDIMVECLTSDFRGDLRAVETLVH-------- 204 (328)
Q Consensus 136 i~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~---ik~~~~~~~i~~~t~~~~~~~e~l~~L~~-------- 204 (328)
+.+.++++.+.|++++++. |.+...+. .+.++-+. +.+....+.-..+.+....+++.++.+.+
T Consensus 67 i~~al~~l~~~G~~~ivV~----Pl~l~~G~-~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~la~~i~~~~~~ 141 (269)
T 2xvy_A 67 PAEALAGMAEEGFTHVAVQ----SLHTIPGE-EFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPA 141 (269)
T ss_dssp HHHHHHHHHHTTCCEEEEE----ECCSSSSH-HHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHCCCCEEEEE----eceeeccH-hHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHHHHHHHHhchh
Q ss_pred -----cCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCE
Q 020304 205 -----SGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 205 -----aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~ 279 (328)
.++=-+.||. +......+.+..+.+.+ .| ....+|.-|..-.+.+.++.+.+.|+..
T Consensus 142 ~~~~~~~lll~~HGs------------~~~~~~~~~~~a~~l~~--~~----~~~~~g~~e~~P~~~~~l~~l~~~G~~~ 203 (269)
T 2xvy_A 142 DRKPGEPVVFMGHGT------------PHPADICYPGLQYYLWR--LD----PDLLVGTVEGSPSFDNVMAELDVRKAKR 203 (269)
T ss_dssp TCCTTCCEEEEECCC------------SSGGGGHHHHHHHHHHT--TC----TTEEEEESSSSSCHHHHHHHHHHHTCSE
T ss_pred hccCCceEEEEECCC------------ChhhccHHHHHHHHHHh--cC----CCEEEEEcCCCCCHHHHHHHHHHCCCCE
Q ss_pred EeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCcee-eeccc
Q 020304 280 LTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYV-ASGPL 324 (328)
Q Consensus 280 i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~-~~g~~ 324 (328)
+.+.+++--+..+ ....+..+.-++|++...+.|++.+ ...++
T Consensus 204 v~v~P~~l~~G~h--~~~di~~~~~~~~~~~~~~~g~~~~~~~~~L 247 (269)
T 2xvy_A 204 VWLMPLMAVAGDH--ARNDMAGDEDDSWTSQLARRGIEAKPVLHGT 247 (269)
T ss_dssp EEEEEESSSCCHH--HHTTTTCSSTTSHHHHHHHTTCEEEECCCCG
T ss_pred EEEECCccccccc--hhhhcCCCchhHHHHHHHHcCcEEEEecCCC
No 437
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=41.87 E-value=24 Score=33.11 Aligned_cols=62 Identities=10% Similarity=0.181 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CC-------CCC-------cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PT-------PLH-------LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PT-------p~~-------~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+...+.+.++.|+++|++.|.+.+... +. ..+ ..+.+ .=+.+++.++.+.+++.|++.+.
T Consensus 39 gG~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~Vil 116 (478)
T 2guy_A 39 GGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMV 116 (478)
T ss_dssp CBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 55788888899999999999988865442 11 110 01222 23689999999999999998764
No 438
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=41.78 E-value=15 Score=34.09 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHH
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKE 267 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~ 267 (328)
.+.++..+.++.||+ .||.|..++++.+ +....-+.+
T Consensus 67 Gt~~df~~lv~~aH~--~Gi~VilD~V~NH~~~~~~~f~~ 104 (441)
T 1lwj_A 67 GSEREFKEMIEAFHD--SGIKVVLDLPIHHTGFLHTWFQK 104 (441)
T ss_dssp CCHHHHHHHHHHHHH--TTCEEEEEECTTBCCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCEEEEEeCCCcccCchHHHHH
Confidence 478999999999999 9999999999988 554333433
No 439
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=41.70 E-value=17 Score=31.46 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 262 DDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 262 ~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.+.+.+++.+..++|+..+++|.|.
T Consensus 47 ~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 47 AKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEec
Confidence 4566666777777777777776554
No 440
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=41.64 E-value=26 Score=32.99 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CC-------CC--C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PT-------PL--H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PT-------p~--~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+...+.+.++.|+++|++.|.+.+... +. .. + ..+.+ .=+.+++.++.+.+++.|++.+.
T Consensus 39 gG~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~Vil 116 (484)
T 2aaa_A 39 GGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMV 116 (484)
T ss_dssp CCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 56788888889999999999988865442 11 10 1 01222 33689999999999999998764
No 441
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=41.61 E-value=1.5e+02 Score=26.56 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=90.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHH-HHHHHHHHHH-HhCCCcEEE--EEeCCC-----CCCH-----HH
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG-HFARTVKAMK-KQKPDIMVE--CLTSDF-----RGDL-----RA 198 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~-~l~~li~~ik-~~~~~~~i~--~~t~~~-----~~~~-----e~ 198 (328)
.++..+.++.+.+.|++.|-- . +.|..+..+ .+-+.++... .+ .++.+. +..+.. ..++ .+
T Consensus 66 ~~~~~~~l~~Al~~Gi~~~DT--A--~~Yg~G~sE~~lG~al~~~~~~R-~~v~I~TK~~~~~~~~~~~~~s~~~i~~~~ 140 (367)
T 3lut_A 66 DEMAEHLMTLAYDNGINLFDT--A--EVYAAGKAEVVLGNIIKKKGWRR-SSLVITTKIFWGGKAETERGLSRKHIIEGL 140 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE--E--TTGGGGHHHHHHHHHHHHHTCCG-GGCEEEEEESBCCSSGGGBSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEC--c--cccCCCchHHHHHHHHHhCCCCC-ceEEEEeccccCCCCccCCCCCHHHHHHHH
Confidence 455678888889999996532 2 225422112 2333333210 01 234442 211110 0122 34
Q ss_pred HHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCC-
Q 020304 199 VETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSID- 276 (328)
Q Consensus 199 l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~- 276 (328)
-+-|++.|+|.+-+-. ++.. ++....++.+++++.+++ .|.. --+|+ .-+.+++.+.+....+.+
T Consensus 141 e~SL~rLg~dyiDl~~-----lH~p--d~~~~~~e~~~al~~l~~--~Gki----r~iGvSn~~~~~l~~~~~~~~~~~~ 207 (367)
T 3lut_A 141 KASLERLQLEYVDVVF-----ANRP--DPNTPMEETVRAMTHVIN--QGMA----MYWGTSRWSSMEIMEAYSVARQFNL 207 (367)
T ss_dssp HHHHHHHTCSCEEEEE-----ESSC--CTTSCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCccceEE-----ecCC--CCCCCHHHHHHHHHHHHH--cCCe----eEEEecCCCHHHHHHHHHHHHHcCC
Confidence 4556677766543200 0110 123468899999999999 8974 24577 788888888877766543
Q ss_pred --CCEEeeecccCCCCCCcccCCCCCHHHHH-HHHHHHHhcCCceeeeccccc
Q 020304 277 --VDILTLGQYLQPTPLHLTVKEYVTPEKFD-FWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 277 --~~~i~i~~~l~PTp~~~~~~~~~~~~~~~-~l~~~~~~~G~~~~~~g~~~~ 326 (328)
+..+.+ .|- ++. ....+ .+...+.+.|+..++-+|+.+
T Consensus 208 ~~~~~~Q~-~~~---~~~--------~~~~e~~l~~~~~~~gi~v~a~spL~~ 248 (367)
T 3lut_A 208 IPPICEQA-EYH---MFQ--------REKVEVQLPELFHKIGVGAMTWSPLAC 248 (367)
T ss_dssp CCCCEEEE-ECB---TTB--------CHHHHTHHHHHHHHHCCEEEEECTTGG
T ss_pred CCceeeec-ccc---cee--------cchhHhHHHHHHHHcCCeEEEeccccc
Confidence 333333 231 121 11112 577889999999999999874
No 442
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=41.56 E-value=34 Score=32.91 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccC-CCC-C-C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQYLQ-PTP-L-H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp-~-~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
-+...+.+.++.|+++|++.|.+.++.. |.. . + ..+.+ .=+.+++.+|.+.+++.|++.+.
T Consensus 29 Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~Vil 98 (557)
T 1zja_A 29 GDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMV 98 (557)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3677888889999999999998875542 211 1 1 01222 33689999999999999999763
No 443
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=41.10 E-value=1.7e+02 Score=25.03 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCC----CCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCc
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIP----DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~----~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~ 208 (328)
.+...+.++.+++.|+.-+.++...+...+ ....+.+..+.+..++. ++.+. +.. .+++.++.+.+. ++
T Consensus 36 ~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~--Gl~~~--te~--~d~~~~~~l~~~-vd 108 (262)
T 1zco_A 36 REQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEY--GLVTV--TEV--MDTRHVELVAKY-SD 108 (262)
T ss_dssp HHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH--TCEEE--EEC--CCGGGHHHHHHH-CS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHc--CCcEE--Eee--CCHHhHHHHHhh-CC
Confidence 556688999999999987777654321111 01134554444444444 66653 322 477778888888 99
Q ss_pred EEeechhhHH--HHHhhhc----------CCCCCHHHHHHHHHHHHHhCCCCe
Q 020304 209 VFAHNIETVK--RLQRIVR----------DPRAGYEQSLEVLKHAKLSKKGLI 249 (328)
Q Consensus 209 ~i~~~~et~~--~~~~~~~----------~~~~~~~~~l~~i~~~~~~~~Gi~ 249 (328)
.+.++.-... .+.+.+. +...+.++++++++.++. .|-.
T Consensus 109 ~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~--~Gn~ 159 (262)
T 1zco_A 109 ILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMA--QGNE 159 (262)
T ss_dssp EEEECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHT--TTCC
T ss_pred EEEECcccccCHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHH--CCCC
Confidence 9998443321 1221111 111378999999998888 7753
No 444
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=41.09 E-value=38 Score=32.95 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCC-----C-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPL-----H-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~-----~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+.+.+.+.++.|+++|++.|.+.++.. |.+. + ..+.+ .=+.+++..+.+.+++.|++.+.
T Consensus 144 gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~Vil 217 (601)
T 3edf_A 144 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQ 217 (601)
T ss_dssp CCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 66788899999999999999988865542 2111 1 01222 33688999999999999999874
No 445
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=41.03 E-value=73 Score=26.79 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCcEEEEE--eccCCC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLT--SVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~--gg~~~~-l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++++.+.+.|++.+.++ |.+... ....+ .++++.+++. ++.+.+ .+++.+.+.+..+.++|++.+.++
T Consensus 139 ~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~----~~~i~~l~~~--~ipvIA--~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 139 VDDGLACQRLGADIIGTTMSGYTTPDTPEEPD----LPLVKALHDA--GCRVIA--EGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSSSSCCSSCC----HHHHHHHHHT--TCCEEE--ESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEcCccCCCCCCCCCCC----HHHHHHHHhc--CCcEEE--ECCCCCHHHHHHHHHcCCCEEEEe
Confidence 466778888999988532 111100 11111 3556666654 555533 455558999999999999999987
No 446
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=40.92 E-value=1.5e+02 Score=25.85 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCcEEEEEecc-CCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 137 ENTAKAIASWGVDYIVLTSVD-RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~-~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
.+..+...+.|+..+-+.=|+ +..|+ +++.-=.++++.|++.. ++.+. +..+.-..+|.+++..+.|+..++++-+
T Consensus 162 eea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~v-~vpLV-lHGgSG~~~e~i~~ai~~Gv~KiNi~Td 238 (288)
T 3q94_A 162 AECKHLVEATGIDCLAPALGSVHGPYK-GEPNLGFAEMEQVRDFT-GVPLV-LHGGTGIPTADIEKAISLGTSKINVNTE 238 (288)
T ss_dssp HHHHHHHHHHCCSEEEECSSCBSSCCS-SSCCCCHHHHHHHHHHH-CSCEE-ECCCTTCCHHHHHHHHHTTEEEEEECHH
T ss_pred HHHHHHHHHHCCCEEEEEcCcccCCcC-CCCccCHHHHHHHHHhc-CCCEE-EeCCCCCCHHHHHHHHHcCCeEEEEChH
Confidence 334444456899877664332 22232 11111123455555543 35553 3433334799999999999999999766
Q ss_pred hH
Q 020304 216 TV 217 (328)
Q Consensus 216 t~ 217 (328)
.-
T Consensus 239 l~ 240 (288)
T 3q94_A 239 NQ 240 (288)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 447
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=40.87 E-value=1.4e+02 Score=25.05 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE----cC-CC-------HH
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG----LG-ES-------DD 263 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG----lg-Et-------~e 263 (328)
++.++.++++|++.+-+..... .. ....+..+..+.+.+ .|+.+.+..-++ ++ .. .+
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~---~~------~~~~~~~~~~~~l~~--~gl~~~~~~~~~~~~~l~~~d~~~r~~~~~ 88 (290)
T 2qul_A 20 PATAKRIAGLGFDLMEISLGEF---HN------LSDAKKRELKAVADD--LGLTVMCCIGLKSEYDFASPDKSVRDAGTE 88 (290)
T ss_dssp HHHHHHHHHTTCSEEEEESTTG---GG------SCHHHHHHHHHHHHH--HTCEEEEEEEECGGGCTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecCCc---cc------cchhhHHHHHHHHHH--cCCceEEecCCCCCCCCCCCCHHHHHHHHH
Confidence 6889999999999988754321 01 112344455556677 899876633222 32 22 25
Q ss_pred HHHHHHHHHHhCCCCEEee
Q 020304 264 DLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 264 ~~~~~l~~l~~l~~~~i~i 282 (328)
.+.+.++.+.++|+..+.+
T Consensus 89 ~~~~~i~~a~~lG~~~v~~ 107 (290)
T 2qul_A 89 YVKRLLDDCHLLGAPVFAG 107 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEe
Confidence 6778888999999998765
No 448
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=40.74 E-value=2e+02 Score=25.83 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHCCCc-----EEEEEeccCCC-----------CC--------CCcHHHHHHHHHHHHHhCCCcEEEEEe
Q 020304 134 MEPENTAKAIASWGVD-----YIVLTSVDRDD-----------IP--------DGGSGHFARTVKAMKKQKPDIMVECLT 189 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~-----~i~l~gg~~~~-----------l~--------~~~~~~l~~li~~ik~~~~~~~i~~~t 189 (328)
+...+.++.+++.|.. .|-|+.-..+. +. .-..+.+..|.++.++. |+.+. +
T Consensus 21 e~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~~~--s 96 (350)
T 3g8r_A 21 EHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKAN--GFKAI--C 96 (350)
T ss_dssp HHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHT--TCEEE--E
T ss_pred HHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcEE--e
Confidence 3346677777777776 88887522110 00 01235556666666655 66663 3
Q ss_pred CCCCCCHHHHHHHHHcCCcEEee
Q 020304 190 SDFRGDLRAVETLVHSGLDVFAH 212 (328)
Q Consensus 190 ~~~~~~~e~l~~L~~aG~~~i~~ 212 (328)
.. .|.+.++.|.+.|++.+.+
T Consensus 97 t~--fD~~svd~l~~~~v~~~KI 117 (350)
T 3g8r_A 97 TP--FDEESVDLIEAHGIEIIKI 117 (350)
T ss_dssp EE--CSHHHHHHHHHTTCCEEEE
T ss_pred cc--CCHHHHHHHHHcCCCEEEE
Confidence 22 4899999999999999988
No 449
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=40.72 E-value=80 Score=28.98 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCC--CcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHHHHH
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVETLVH 204 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~--~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~L~~ 204 (328)
+++++.+.++++.+.|++.+-+.|.......+ .+.+.-.+.++++++.. +++.+.+-.|... +. +.++.|.+
T Consensus 125 ~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~-~~~~A~~~~~~L~~ 203 (405)
T 3rr1_A 125 RPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRV-SAPMAKVLIKELEP 203 (405)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCB-CHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCC-CHHHHHHHHHHHHh
Confidence 46777888888889999999885433211111 12355677888888875 6666654334332 42 34677777
Q ss_pred cCCcEE
Q 020304 205 SGLDVF 210 (328)
Q Consensus 205 aG~~~i 210 (328)
.|+..+
T Consensus 204 ~~i~~i 209 (405)
T 3rr1_A 204 YRPLFI 209 (405)
T ss_dssp GCCSCE
T ss_pred cCCCEE
Confidence 787655
No 450
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=40.70 E-value=1.1e+02 Score=28.54 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=52.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCC-------CC---c---HHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIP-------DG---G---SGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVE 200 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~-------~~---~---~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~ 200 (328)
++.+.++.+.+.|++.+.+++....... .+ + .+...++++.+++..+ ++.+. ..+++.+.+.+.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVI--g~GGI~s~~DA~ 389 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII--ASGGIFSGLDAL 389 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEE--EESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEE--EECCCCCHHHHH
Confidence 6778889999999999999765431110 00 0 1335678888888743 46553 355666877777
Q ss_pred HHHHcCCcEEeec
Q 020304 201 TLVHSGLDVFAHN 213 (328)
Q Consensus 201 ~L~~aG~~~i~~~ 213 (328)
++..+|.+.+.++
T Consensus 390 e~l~aGAd~Vqig 402 (443)
T 1tv5_A 390 EKIEAGASVCQLY 402 (443)
T ss_dssp HHHHTTEEEEEES
T ss_pred HHHHcCCCEEEEc
Confidence 7778999998875
No 451
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=40.70 E-value=1.9e+02 Score=25.46 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=79.6
Q ss_pred HHHHHHHCCCcEEEEEe-------ccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC----HHHHHHHHHcCC
Q 020304 139 TAKAIASWGVDYIVLTS-------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLVHSGL 207 (328)
Q Consensus 139 ~~~~~~~~G~~~i~l~g-------g~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~----~e~l~~L~~aG~ 207 (328)
.++.+.+.|++-+.++| |.++.. .-..+.....++.|.+.. ++.+.+--+.+..+ .+.++.|.++|+
T Consensus 41 sA~l~e~aG~dai~vs~~s~a~~~G~pD~~-~vt~~em~~~~~~I~r~~-~~pviaD~d~Gyg~~~~v~~~v~~l~~aGa 118 (305)
T 3ih1_A 41 AALVARNTGFLALYLSGAAYTASKGLPDLG-IVTSTEVAERARDLVRAT-DLPVLVDIDTGFGGVLNVARTAVEMVEAKV 118 (305)
T ss_dssp HHHHHHHTTCSCEEECHHHHHHHHTCCSSS-CSCHHHHHHHHHHHHHHH-CCCEEEECTTCSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECcHHHHHhCCCCCCC-cCCHHHHHHHHHHHHHhc-CCCEEEECCCCCCCHHHHHHHHHHHHHhCC
Confidence 35556678999888877 444321 123566677777776542 34444322222223 245788899999
Q ss_pred cEEeechhhHHHHHhhh-cCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCC-----HHHHHHHHHHHHhCCCCEEe
Q 020304 208 DVFAHNIETVKRLQRIV-RDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGES-----DDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 208 ~~i~~~~et~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt-----~e~~~~~l~~l~~l~~~~i~ 281 (328)
..+.+-..+..+..-.. .+.-.+.++..+.|+.+++ +|.. .+|++=.+. .++..+-.+...+.|+|.+.
T Consensus 119 agv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~~--A~~~---~~I~ARtda~~~~g~~~ai~Ra~ay~eAGAD~i~ 193 (305)
T 3ih1_A 119 AAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKE--VAPS---LYIVARTDARGVEGLDEAIERANAYVKAGADAIF 193 (305)
T ss_dssp SEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHH--HCTT---SEEEEEECCHHHHCHHHHHHHHHHHHHHTCSEEE
T ss_pred cEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHHH--cCCC---eEEEEeeccccccCHHHHHHHHHHHHHcCCCEEE
Confidence 99988443321110000 0112467888888888888 5543 245554443 45555666666778999877
Q ss_pred e
Q 020304 282 L 282 (328)
Q Consensus 282 i 282 (328)
+
T Consensus 194 ~ 194 (305)
T 3ih1_A 194 P 194 (305)
T ss_dssp E
T ss_pred E
Confidence 6
No 452
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=40.68 E-value=1.9e+02 Score=25.44 Aligned_cols=85 Identities=8% Similarity=-0.014 Sum_probs=64.4
Q ss_pred CHHHHHHHHHcCCcEEeec-hhhHHH-HH-hhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHN-IETVKR-LQ-RIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMAD 271 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~-~et~~~-~~-~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~ 271 (328)
|.-..+.+.++|++.+.++ ...... +. .-. ...++++.+..++.+.+....+++.+++=.|+|. .+++.++++.
T Consensus 27 D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~--~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~-~~~v~~tv~~ 103 (302)
T 3fa4_A 27 DGLSARVALSAGFDALYMTGAGTAASVHGQADL--GICTLNDMRANAEMISNISPSTPVIADADTGYGG-PIMVARTTEQ 103 (302)
T ss_dssp SHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSS--SCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSS-HHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCC--CcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCC-HHHHHHHHHH
Confidence 7778888999999999984 433332 21 211 1368999999988887622377888998889874 7889999999
Q ss_pred HHhCCCCEEee
Q 020304 272 LRSIDVDILTL 282 (328)
Q Consensus 272 l~~l~~~~i~i 282 (328)
+.+.|+.-+.+
T Consensus 104 l~~aGaagv~i 114 (302)
T 3fa4_A 104 YSRSGVAAFHI 114 (302)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHcCCcEEEE
Confidence 99999998887
No 453
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=40.62 E-value=1e+02 Score=26.61 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE-eechhhHHHHHhhh-----cCCCCC---HHHHHHH
Q 020304 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF-AHNIETVKRLQRIV-----RDPRAG---YEQSLEV 237 (328)
Q Consensus 167 ~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i-~~~~et~~~~~~~~-----~~~~~~---~~~~l~~ 237 (328)
+++.+.++.+|+..| -+++.||.-. -......+-..|-..+ .+..|-..++-+.. .....+ .+..+.+
T Consensus 2 ~~i~~~l~~vr~~~P--Lvh~iTN~V~-~n~~AN~lLA~GasPiMa~~~~E~~e~~~~a~al~iNiGtl~~~~~~~m~~A 78 (265)
T 3hpd_A 2 KFIIEALKRVRERRP--LVHNITNFVV-MNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKA 78 (265)
T ss_dssp HHHHHHHHHHHHHCC--EEEEECCTTT-HHHHHHHHHHHTCEEEECCCTTTHHHHHHHCSEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC--cEEeccchhh-HHHHHHHHHHhCCchhhcCCHHHHHHHHHHCCeEEEECCCCChHHHHHHHHH
Confidence 678899999999876 4567776532 3556666666665543 23444443332211 101112 2345566
Q ss_pred HHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeec--c--cCC-CCCCcccC--CCCCHHHHHHHHHH
Q 020304 238 LKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQ--Y--LQP-TPLHLTVK--EYVTPEKFDFWKAY 310 (328)
Q Consensus 238 i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~--~--l~P-Tp~~~~~~--~~~~~~~~~~l~~~ 310 (328)
.+.+.+ .|.++..+ .+|.|-+.-......+++.. ++..+.=+. + +.. +.....+. .....+..+..+++
T Consensus 79 ~~~A~~--~~~PvVLD-PVg~gas~~R~~~~~~ll~~-~~~vIrgN~sEi~~L~g~~~~~~gvds~~~~~~d~~~~a~~l 154 (265)
T 3hpd_A 79 TEIANE--LGKPIVLD-PVGAGATKFRTRVSLEILSR-GVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNA 154 (265)
T ss_dssp HHHHHH--HTCCEEEE-CTTBTTBHHHHHHHHHHHHH-CCSEEEEEHHHHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred HHHHHH--cCCCEEEc-CCCCCCcHHHHHHHHHHHhc-CCcEEcCCHHHHHHHhcccCCCCCccCccccHHHHHHHHHHH
Confidence 677778 88886655 44666665433333333433 666554321 0 000 00000011 11113345566788
Q ss_pred HHhcCCceeeecc
Q 020304 311 GESIGFRYVASGP 323 (328)
Q Consensus 311 ~~~~G~~~~~~g~ 323 (328)
+++.|--.+-.|+
T Consensus 155 A~~~~~vVvlkG~ 167 (265)
T 3hpd_A 155 AREFNTTVAVTGA 167 (265)
T ss_dssp HHHTTSEEEEESS
T ss_pred HHHhCCEEEEeCC
Confidence 8898888877775
No 454
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=40.57 E-value=1.7e+02 Score=24.72 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=46.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEE-EeCC----CC-CCH-----------H
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC-LTSD----FR-GDL-----------R 197 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~-~t~~----~~-~~~-----------e 197 (328)
.+.+.++.+.+.|++.|-+.....+.+. ...+.++-+.+++. ++.+.. ..+. .. .++ +
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~---~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~ 92 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYS---DIQINELKACAHGN--GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTD 92 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCC---HHHHHHHHHHHHHT--TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcC---HHHHHHHHHHHHHc--CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 5678888899999999988754322222 46677766777766 677765 2221 11 132 3
Q ss_pred HHHHHHHcCCcEEe
Q 020304 198 AVETLVHSGLDVFA 211 (328)
Q Consensus 198 ~l~~L~~aG~~~i~ 211 (328)
.++..++.|...+.
T Consensus 93 ~i~~a~~lG~~~v~ 106 (294)
T 3vni_A 93 LLKRLYKLDVHLIG 106 (294)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHhCCCeee
Confidence 57777788988875
No 455
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=40.49 E-value=1.7e+02 Score=24.88 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=7.3
Q ss_pred HHHHHHHHcCCcEEee
Q 020304 197 RAVETLVHSGLDVFAH 212 (328)
Q Consensus 197 e~l~~L~~aG~~~i~~ 212 (328)
+.++.++++|++.+-+
T Consensus 40 ~~l~~a~~~G~~~vEl 55 (296)
T 2g0w_A 40 KRVKVAAENGFDGIGL 55 (296)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 4444444444444444
No 456
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=40.35 E-value=34 Score=32.01 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCC-C-----cccC-CCCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPL-H-----LTVK-EYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~-~-----~~~~-~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
+-+...+.+.++.|+++|++.|.+.++.. |+.. + ..+. ..=+.+++.++.+.+++.|++.+.
T Consensus 46 ~G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~Vil 115 (475)
T 2z1k_A 46 GGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVIL 115 (475)
T ss_dssp CCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 55788899999999999999998865542 2111 1 0112 223688999999999999998764
No 457
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=40.30 E-value=1.5e+02 Score=27.62 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEE----eechhhHHHHHhhhcCCC-------CCHHHH
Q 020304 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF----AHNIETVKRLQRIVRDPR-------AGYEQS 234 (328)
Q Consensus 166 ~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i----~~~~et~~~~~~~~~~~~-------~~~~~~ 234 (328)
.+.+..+++.+.+. -++.+.+-+ .+.+.+++-.+++.+.. ....+-.+.+.......+ ...+..
T Consensus 140 pe~~~~vVk~V~e~-~dvPL~IDS----~dpevleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~dl~~l 214 (446)
T 4djd_C 140 PAAFKAAVASVAAA-TQLNLVLMA----DDPDVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGNGLEEL 214 (446)
T ss_dssp THHHHHHHHHHHTT-CCSEEEEEC----SCHHHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCEEEec----CCHHHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 58999999999886 377776654 37899999888875532 223333333322211001 157778
Q ss_pred HHHHHHHHHhCCCCe-EEEeEEE-EcCCCHHHHHHH
Q 020304 235 LEVLKHAKLSKKGLI-TKSSIML-GLGESDDDLKEA 268 (328)
Q Consensus 235 l~~i~~~~~~~~Gi~-v~~~~iv-GlgEt~e~~~~~ 268 (328)
.+.++.+.+ .|++ +..+--+ |++.|.++..+.
T Consensus 215 kelv~~a~~--~GI~~IvLDPG~~g~~~t~~~~~~i 248 (446)
T 4djd_C 215 AELVDKIVA--LGHKQLVLDPGARETSRAIADFTQI 248 (446)
T ss_dssp HHHHHHHHH--TTCCCEEEECCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCcEEECCCchhHHHHHHHHHHH
Confidence 888888888 8985 3223222 455566665555
No 458
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=40.06 E-value=21 Score=32.74 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 228 RAGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
-.+.++..+.++.+|+ .||.|..++++.+
T Consensus 65 ~Gt~~d~~~lv~~~h~--~Gi~VilD~V~NH 93 (405)
T 1ht6_A 65 YGNAAELKSLIGALHG--KGVQAIADIVINH 93 (405)
T ss_dssp TCCHHHHHHHHHHHHH--TTCEEEEEECCSB
T ss_pred CCCHHHHHHHHHHHHH--CCCEEEEEECcCc
Confidence 3478999999999999 9999999999988
No 459
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=39.81 E-value=1.6e+02 Score=26.16 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGL 248 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi 248 (328)
+.+.++..++..|...+++... +.+.+++..++|+|.+.++ +.+.++..++++.+. ...
T Consensus 218 i~~Av~~ar~~~p~~kIeVEVd----tldea~eAl~aGaD~I~LD--------------n~~~~~l~~av~~l~---~~v 276 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEVETE----TLAELEEAISAGADIIMLD--------------NFSLEMMREAVKINA---GRA 276 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEEEES----SHHHHHHHHHTTCSEEEEE--------------SCCHHHHHHHHHHHT---TSS
T ss_pred HHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhC---CCC
Confidence 4566777787777766655442 4456666667899988874 235566555555442 222
Q ss_pred eEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 249 ITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 249 ~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
. +.-- |-|.+.+ ..+.+.|+|.+.+..
T Consensus 277 ~-----ieaSGGIt~~~I----~~~a~tGVD~isvGa 304 (320)
T 3paj_A 277 A-----LENSGNITLDNL----KECAETGVDYISVGA 304 (320)
T ss_dssp E-----EEEESSCCHHHH----HHHHTTTCSEEECTH
T ss_pred e-----EEEECCCCHHHH----HHHHHcCCCEEEECc
Confidence 2 2222 5665554 445579999998864
No 460
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=39.74 E-value=19 Score=31.55 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=48.5
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~a 205 (328)
+.+...+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+...++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls---~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~A~~~ 94 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPTLS---KSEHEQVVEITIKTANGRVPVIAGAGSN-STAEAIAFVRHAQNA 94 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSC---HHHHHHHHHHHHHHHTTSSCBEEECCCS-SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCc-cHHHHHHHHHHHHHc
Confidence 344567888888899999988754 5655565 456666777665532 235554433221 133 556667788
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|.|.+.+
T Consensus 95 Gadavlv 101 (292)
T 2vc6_A 95 GADGVLI 101 (292)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 461
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=39.74 E-value=44 Score=29.08 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CC-CHHHHHHHHHHHHh
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GE-SDDDLKEAMADLRS 274 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gE-t~e~~~~~l~~l~~ 274 (328)
.+.++.++..+.+.+ .|..-..-+.-.+ .- |.+++.++++.+.+
T Consensus 72 ~~t~~ai~la~~A~~--~Gadavlv~~P~y~~~~~~~~l~~~f~~va~ 117 (283)
T 2pcq_A 72 ETLPQAEGALLEAKA--AGAMALLATPPRYYHGSLGAGLLRYYEALAE 117 (283)
T ss_dssp SSHHHHHHHHHHHHH--HTCSEEEECCCCTTGGGTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCCEEEecCCcCCCCCCHHHHHHHHHHHhc
Confidence 456666666666666 6654111110111 23 55666666666666
No 462
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=39.69 E-value=1.8e+02 Score=25.00 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHHHHHHHcCCc
Q 020304 196 LRAVETLVHSGLD 208 (328)
Q Consensus 196 ~e~l~~L~~aG~~ 208 (328)
-+.++.+.++|+.
T Consensus 120 ~~~I~al~~agip 132 (264)
T 1m3u_A 120 VETVQMLTERAVP 132 (264)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3455555555533
No 463
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=39.64 E-value=1.8e+02 Score=24.95 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHH
Q 020304 228 RAGYEQSLEVLKHAKL 243 (328)
Q Consensus 228 ~~~~~~~l~~i~~~~~ 243 (328)
+.+.++.++.++.+++
T Consensus 73 G~~~~~~~~~v~~ir~ 88 (271)
T 1ujp_A 73 GMSVQGALELVREVRA 88 (271)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4556666666666665
No 464
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=39.61 E-value=1.6e+02 Score=24.64 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCC--cEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeech
Q 020304 137 ENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (328)
Q Consensus 137 ~~~~~~~~~~G~--~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~ 214 (328)
...++.+.+.+. ..+++++.+. +.++.+++..|++.+..+... ...+....++..|++.+..+.
T Consensus 130 ~~v~~~l~~~~~~~~~vii~SF~~------------~~l~~~~~~~p~~~~~~l~~~--~~~~~~~~~~~~~~~~i~~~~ 195 (252)
T 3qvq_A 130 AASVEVLKQHWPQDLPLLFSSFNY------------FALVSAKALWPEIARGYNVSA--IPSAWQERLEHLDCAGLHIHQ 195 (252)
T ss_dssp HHHHHHHHHHSCTTSCEEEEESCH------------HHHHHHHHHCTTSCEEEECSS--CCTTHHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHHhCcccCCEEEEeCCH------------HHHHHHHHHCCCCcEEEEEec--CchhHHHHHHHcCCeEEecch
Q ss_pred hhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 215 ETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 215 et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
..+++ +.++.+++ .|+.|.+..+ +=.+.++.+.++|++.+.
T Consensus 196 ~~~~~----------------~~v~~~~~--~G~~v~~WTv--------n~~~~~~~l~~~GVdgIi 236 (252)
T 3qvq_A 196 SFFDV----------------QQVSDIKA--AGYKVLAFTI--------NDESLALKLYNQGLDAVF 236 (252)
T ss_dssp GGCCH----------------HHHHHHHH--TTCEEEEECC--------CCHHHHHHHHHTTCCEEE
T ss_pred hhCCH----------------HHHHHHHH--CCCEEEEEcC--------CCHHHHHHHHHcCCCEEE
No 465
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=39.57 E-value=1.7e+02 Score=24.60 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=26.2
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL 188 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~ 188 (328)
+.++.+++.|++.|-+.......+. .+.+.++.+.+++. ++.+...
T Consensus 25 ~~l~~~~~~G~~~vEl~~~~~~~~~---~~~~~~~~~~l~~~--gl~~~~~ 70 (290)
T 3tva_A 25 VHLEVAQDLKVPTVQVHAPHPHTRT---REHAQAFRAKCDAA--GIQVTVI 70 (290)
T ss_dssp BCHHHHHHTTCSEEEEECCCGGGCS---HHHHHHHHHHHHHT--TCEEEEE
T ss_pred HHHHHHHHcCCCEEEecCCCCCcCC---HHHHHHHHHHHHHc--CCEEEEE
Confidence 3456667788887777643321122 35566665666665 5666544
No 466
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=39.42 E-value=6.2 Score=33.64 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
+..+.++.+.+.|+..+.+++...+.... ..-.++++.+++.. ++.+ ...+++.+.+.+..+.++|++.+.++
T Consensus 157 ~~~~~a~~~~~~G~~~i~~t~~~~~g~~~---g~~~~~~~~i~~~~-~iPv--ia~GGI~~~~d~~~~~~~Gad~v~vg 229 (247)
T 3tdn_A 157 LLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLT-TLPI--IASGGAGKMEHFLEAFLRGADKVSIN 229 (247)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhcCCCEEEEecccCCCCcC---CCCHHHHHHHHHhC-CCCE--EEECCCCCHHHHHHHHHcCCcHhhcc
Confidence 44556777788899988887643321111 11235666666542 3444 34555556888899999999988775
No 467
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=39.42 E-value=71 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCC--cHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 137 ENTAKAIASWGVDYIVLTSVDRDDIPDG--GSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg~~~~l~~~--~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
.++++.+.+.|.+-| |.++-++.+. +.+...++.. ..| +..+... + ++.+++.+..|+++|++.+.+|
T Consensus 163 ~~El~rAl~~~a~iI---GINNRnL~tf~vdl~~t~~L~~----~ip~~~~~VsE-S-GI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 163 ENDLDIALRIGARFI---GIMSRDFETGEINKENQRKLIS----MIPSNVVKVAK-L-GISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHHTTCSEE---EECSBCTTTCCBCHHHHHHHHT----TSCTTSEEEEE-E-SSCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHhcCCCcEE---EEeCCCccccccCHHHHHHHHh----hCCCCCEEEEc-C-CCCCHHHHHHHHHCCCCEEEEC
Confidence 556677777787744 4444344432 2344444443 333 3333222 2 4458999999999999999997
No 468
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=39.25 E-value=14 Score=33.33 Aligned_cols=78 Identities=10% Similarity=0.005 Sum_probs=49.9
Q ss_pred CCCCchHHHHHHHHHCCCcEEEEEe--ccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH---HHHHHHHH
Q 020304 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL---RAVETLVH 204 (328)
Q Consensus 131 ~~~~ei~~~~~~~~~~G~~~i~l~g--g~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~---e~l~~L~~ 204 (328)
.+.+.+.+.++.+.+.|++.+++.| |+...+. .+.-.++++.+.+.. ..+.+.+.+... -+. +..+..++
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls---~eEr~~vi~~~ve~~~grvpViaGvg~~-st~eai~la~~A~~ 124 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLG---AEERKAIARFAIDHVDRRVPVLIGTGGT-NARETIELSQHAQQ 124 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSC---HHHHHHHHHHHHHHHTTSSCEEEECCSS-CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccChhhCC---HHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHh
Confidence 3445567888888999999998865 4555555 466667777666532 245565443322 134 45666777
Q ss_pred cCCcEEee
Q 020304 205 SGLDVFAH 212 (328)
Q Consensus 205 aG~~~i~~ 212 (328)
+|+|.+.+
T Consensus 125 ~Gadavlv 132 (343)
T 2v9d_A 125 AGADGIVV 132 (343)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998865
No 469
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=39.21 E-value=1.6e+02 Score=24.31 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEe--CCCC-CC---HHHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFR-GD---LRAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t--~~~~-~~---~e~l~~L~~a 205 (328)
+.+++.+.++++.+.|+..+++.. ..+....+.++ ++.+.... |... .. ...++...++
T Consensus 18 t~~~i~~l~~~a~~~g~~~v~v~~-----------~~v~~~~~~l~----~v~v~~v~~~P~g~~~~~~k~~~~~~A~~~ 82 (225)
T 1mzh_A 18 SEKEIEEFVLKSEELGIYAVCVNP-----------YHVKLASSIAK----KVKVCCVIGFPLGLNKTSVKVKEAVEAVRD 82 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECG-----------GGHHHHHHHCS----SSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCeEEEECH-----------HHHHHHHHHhc----CCceeeEecCCCCccchhhhHHHHHHHHHc
Confidence 445678888888899999888531 11111112221 45554332 1111 11 2344567789
Q ss_pred CCcEEee--chhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEee
Q 020304 206 GLDVFAH--NIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTL 282 (328)
Q Consensus 206 G~~~i~~--~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i 282 (328)
|.+.+-+ |+-. + + ...++...+.++.+++...++ ..-+|+-- +-|.+++.+..+.+.+.|+|.+..
T Consensus 83 Gad~Id~viN~g~---~----~--~~~~~~~~~~i~~v~~a~~pv--~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t 151 (225)
T 1mzh_A 83 GAQELDIVWNLSA---F----K--SEKYDFVVEELKEIFRETPSA--VHKVIVETPYLNEEEIKKAVEICIEAGADFIKT 151 (225)
T ss_dssp TCSEEEEECCHHH---H----H--TTCHHHHHHHHHHHHHTCTTS--EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEecHHH---H----h--cCChHHHHHHHHHHHHHhcCc--eEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 9998874 4432 1 1 345677777788887733333 33344333 558888999999999999999855
No 470
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=39.15 E-value=1.7e+02 Score=25.28 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=74.0
Q ss_pred CCCchHHHHHHHHH-C-CCcEEEE--EeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCC
Q 020304 132 DPMEPENTAKAIAS-W-GVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (328)
Q Consensus 132 ~~~ei~~~~~~~~~-~-G~~~i~l--~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~ 207 (328)
+.+|....++..++ . |.+.|.+ .+.+...++| .....+..+.+.+. |+.+..++.+ |....++|.++|+
T Consensus 85 ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD--~~~tv~aa~~L~~~--Gf~Vlpy~~d---d~~~akrl~~~G~ 157 (265)
T 1wv2_A 85 DAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPN--VVETLKAAEQLVKD--GFDVMVYTSD---DPIIARQLAEIGC 157 (265)
T ss_dssp SHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBC--HHHHHHHHHHHHTT--TCEEEEEECS---CHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcC--HHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHhCC
Confidence 45677777776666 3 4556655 3333333343 56666666666665 6776544554 7899999999999
Q ss_pred cEEee-chhhHHHHHhhhcCCCC-CHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 208 DVFAH-NIETVKRLQRIVRDPRA-GYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 208 ~~i~~-~~et~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
+.+-- +..+. .+.+. ++ +.++.+.. . .+++ +|.+= -.|.+|....+ ++|++-+.++.
T Consensus 158 ~aVmPlg~pIG-------sG~Gi~~~-~lI~~I~e--~--~~vP----VI~eGGI~TPsDAa~Am----eLGAdgVlVgS 217 (265)
T 1wv2_A 158 IAVMPLAGLIG-------SGLGICNP-YNLRIILE--E--AKVP----VLVDAGVGTASDAAIAM----ELGCEAVLMNT 217 (265)
T ss_dssp SEEEECSSSTT-------CCCCCSCH-HHHHHHHH--H--CSSC----BEEESCCCSHHHHHHHH----HHTCSEEEESH
T ss_pred CEEEeCCccCC-------CCCCcCCH-HHHHHHHh--c--CCCC----EEEeCCCCCHHHHHHHH----HcCCCEEEECh
Confidence 98742 32111 11122 43 33333332 3 5666 34444 46788766554 56999888854
Q ss_pred c
Q 020304 285 Y 285 (328)
Q Consensus 285 ~ 285 (328)
-
T Consensus 218 A 218 (265)
T 1wv2_A 218 A 218 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 471
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=39.05 E-value=8.4 Score=33.35 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=17.2
Q ss_pred EcCCCHHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 257 GLGESDDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 257 GlgEt~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
|+....+.+.+++++..++|+..+++|.|.
T Consensus 49 GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS 78 (256)
T 4h8e_A 49 GHYEGMQTIKKITRIASDIGVKYLTLYAFS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 443334555566666666666666666554
No 472
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=38.81 E-value=2e+02 Score=25.37 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=72.2
Q ss_pred hHHHHHHHHHCC--CcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 136 PENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 136 i~~~~~~~~~~G--~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
..+.++.+.+.| +..+.+.... ++.....+.++.+++..++..+.. +...+.+.++.+.++|+|.+.++
T Consensus 107 ~~~~a~~~~~~g~~~~~i~i~~~~------G~~~~~~~~i~~lr~~~~~~~vi~---G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 107 EYEFVQQLAAEHLTPEYITIDIAH------GHSNAVINMIQHIKKHLPESFVIA---GNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECSS------CCSHHHHHHHHHHHHHCTTSEEEE---EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEEEECCC------CCcHHHHHHHHHHHHhCCCCEEEE---CCcCCHHHHHHHHHcCCCEEEEe
Confidence 345677777888 7777664322 123678889999999876555532 11247899999999999999873
Q ss_pred hhh---HH-HHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE-EcCCCHHHHHHHHHHHHhCCCCEEeeec
Q 020304 214 IET---VK-RLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIML-GLGESDDDLKEAMADLRSIDVDILTLGQ 284 (328)
Q Consensus 214 ~et---~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~iv-GlgEt~e~~~~~l~~l~~l~~~~i~i~~ 284 (328)
.-. .+ ........++.+ ++.+..+++. .+++ +|. |=--|.+|+.+.+. +|++.+.+..
T Consensus 178 ~hgG~~~~~~~~~~~g~~g~~----~~~l~~v~~~-~~ip----VIa~GGI~~g~Dv~kala----lGAdaV~iGr 240 (336)
T 1ypf_A 178 IGPGKVCITKIKTGFGTGGWQ----LAALRWCAKA-ASKP----IIADGGIRTNGDVAKSIR----FGATMVMIGS 240 (336)
T ss_dssp SSCSTTCHHHHHHSCSSTTCH----HHHHHHHHHT-CSSC----EEEESCCCSTHHHHHHHH----TTCSEEEESG
T ss_pred cCCCceeecccccCcCCchhH----HHHHHHHHHH-cCCc----EEEeCCCCCHHHHHHHHH----cCCCEEEeCh
Confidence 211 11 111111101111 3444444441 3554 333 11245566665543 6999888764
No 473
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=38.74 E-value=85 Score=25.73 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++++.+.+.|++.+.+...-+.....+....-.+.++.+++.. ++.+.+ .+++ +.+.+..+.++|.+.+.++
T Consensus 121 ~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia--~GGI-~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 121 EEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIA--IGGM-TPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp HHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEE--ESSC-CGGGHHHHHHTTCSEEEES
T ss_pred HHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEE--ECCC-CHHHHHHHHHcCCCEEEEh
Confidence 4566677889998877432111011000112235666666653 455533 4555 8888889999999998885
No 474
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=38.60 E-value=56 Score=29.57 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=47.1
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcC-CcEEeec
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAHN 213 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG-~~~i~~~ 213 (328)
+..+.++.+.+.|+..+.+.++.....+... .+.++.+++.. ++.+. .++.+ +.+.++.+.+.| +|.+.++
T Consensus 252 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~----~~~~~~v~~~~-~iPvi--~~Ggi-t~~~a~~~l~~g~aD~V~~g 323 (364)
T 1vyr_A 252 DALYLIEELAKRGIAYLHMSETDLAGGKPYS----EAFRQKVRERF-HGVII--GAGAY-TAEKAEDLIGKGLIDAVAFG 323 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTTBCCCCC----HHHHHHHHHHC-CSEEE--EESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHHhCCCEEEEecCcccCCCccc----HHHHHHHHHHC-CCCEE--EECCc-CHHHHHHHHHCCCccEEEEC
Confidence 4566788888999999988764321111111 34677788774 45553 34555 888888888887 9998874
No 475
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=38.39 E-value=96 Score=28.23 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEE-eCCCCCC-HHHHHHHHHcCCc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECL-TSDFRGD-LRAVETLVHSGLD 208 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~-t~~~~~~-~e~l~~L~~aG~~ 208 (328)
+++.+.+.++.+.+. +..|.|-....-.. +..+.++++.+++.. +++.+.+- .++.-+- ...+.. .++|++
T Consensus 143 ~~~~~~~~~~~~~~~-a~~i~l~DT~G~~~----P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laA-v~aGa~ 216 (382)
T 2ztj_A 143 EEQDLLAVYEAVAPY-VDRVGLADTVGVAT----PRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEA-IEAGAT 216 (382)
T ss_dssp CHHHHHHHHHHHGGG-CSEEEEEETTSCCC----HHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHH-HHTTCC
T ss_pred CHHHHHHHHHHHHHh-cCEEEecCCCCCCC----HHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHH-HHhCCC
Confidence 456678888888888 88888854332112 588899999998863 45555442 3332222 344444 468999
Q ss_pred EEee
Q 020304 209 VFAH 212 (328)
Q Consensus 209 ~i~~ 212 (328)
.+..
T Consensus 217 ~vd~ 220 (382)
T 2ztj_A 217 HVDT 220 (382)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 476
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=38.39 E-value=66 Score=24.46 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Q 020304 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITK 251 (328)
Q Consensus 172 li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~ 251 (328)
++..+-+. .++.+.-+.... -.++.++..++.+.+.+.++.-. ..+.....+.++.+++ .|.. .
T Consensus 22 ~v~~~l~~-~G~~Vi~lG~~~-p~e~~v~~a~~~~~d~v~lS~~~-----------~~~~~~~~~~i~~l~~--~g~~-~ 85 (137)
T 1ccw_A 22 ILDHAFTN-AGFNVVNIGVLS-PQELFIKAAIETKADAILVSSLY-----------GQGEIDCKGLRQKCDE--AGLE-G 85 (137)
T ss_dssp HHHHHHHH-TTCEEEEEEEEE-CHHHHHHHHHHHTCSEEEEEECS-----------STHHHHHTTHHHHHHH--TTCT-T
T ss_pred HHHHHHHH-CCCEEEECCCCC-CHHHHHHHHHhcCCCEEEEEecC-----------cCcHHHHHHHHHHHHh--cCCC-C
Confidence 44443333 266664322221 13677888888888887775311 1233344456666667 6653 1
Q ss_pred EeEEEEc-C-CCHHHHHHHHHHHHhCCCCE
Q 020304 252 SSIMLGL-G-ESDDDLKEAMADLRSIDVDI 279 (328)
Q Consensus 252 ~~~ivGl-g-Et~e~~~~~l~~l~~l~~~~ 279 (328)
..+++|= . -..+++.+..+.++++|++.
T Consensus 86 i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~ 115 (137)
T 1ccw_A 86 ILLYVGGNIVVGKQHWPDVEKRFKDMGYDR 115 (137)
T ss_dssp CEEEEEESCSSSSCCHHHHHHHHHHTTCSE
T ss_pred CEEEEECCCcCchHhhhhhHHHHHHCCCCE
Confidence 2245542 1 11235555667788899885
No 477
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=38.12 E-value=1.6e+02 Score=24.48 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=14.3
Q ss_pred chHHHHHHHHHCCCcEEEEE
Q 020304 135 EPENTAKAIASWGVDYIVLT 154 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~ 154 (328)
.+.+.++.+.+.|++.|-+.
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~ 34 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIR 34 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEc
Confidence 35566777777888877765
No 478
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=38.08 E-value=90 Score=26.25 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHCCCcEEEEEeccCCCC-CCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHH-HcCCcEEe
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSGLDVFA 211 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~~~~l-~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~-~aG~~~i~ 211 (328)
.+..+.++++.+.|+++|. |+|..+.. ...+.+.+.++++. ....+.+ +..+++ +.+-+..+. ..|++.+.
T Consensus 133 ~d~~~ale~L~~lGv~rIL-TSG~~~~~~a~~g~~~L~~Lv~~---a~~ri~I--m~GgGV-~~~Ni~~l~~~tGv~e~H 205 (224)
T 2bdq_A 133 SDQKKSIDQLVALGFTRIL-LHGSSNGEPIIENIKHIKALVEY---ANNRIEI--MVGGGV-TAENYQYICQETGVKQAH 205 (224)
T ss_dssp TTHHHHHHHHHHTTCCEEE-ECSCSSCCCGGGGHHHHHHHHHH---HTTSSEE--EECSSC-CTTTHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCCEEE-CCCCCCCCcHHHHHHHHHHHHHh---hCCCeEE--EeCCCC-CHHHHHHHHHhhCCCEEc
Confidence 3456778899999999987 55543321 12235666666553 2224554 333343 655555555 68998887
Q ss_pred e
Q 020304 212 H 212 (328)
Q Consensus 212 ~ 212 (328)
.
T Consensus 206 ~ 206 (224)
T 2bdq_A 206 G 206 (224)
T ss_dssp E
T ss_pred c
Confidence 6
No 479
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=38.07 E-value=26 Score=32.43 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeeecccC-CCCCC-----cccCC-CCCHHHHHHHHHHHHhcCCceee
Q 020304 260 ESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLH-----LTVKE-YVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 260 Et~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~-----~~~~~-~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
-+...+.+.++.|+++|++.|.+.++.. |..-+ ..+.+ +=+.++++++.+.+++.|++.+.
T Consensus 33 Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~vil 100 (424)
T 2dh2_A 33 GNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVIL 100 (424)
T ss_dssp CSHHHHHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3677788889999999999988865542 21111 11222 23688999999999999999875
No 480
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=38.07 E-value=45 Score=32.63 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHh-CCCCEEeeecccCCCCCCc--------ccC-CCCCHHHHHHHHHHHHhcC--C--cee
Q 020304 259 GESDDDLKEAMADLRS-IDVDILTLGQYLQPTPLHL--------TVK-EYVTPEKFDFWKAYGESIG--F--RYV 319 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~-l~~~~i~i~~~l~PTp~~~--------~~~-~~~~~~~~~~l~~~~~~~G--~--~~~ 319 (328)
|-+.+.+.+.++.|++ ||++.|-+.+.. +.|..+ .+. .+=+++++.++.+.+++.| + +.+
T Consensus 187 gG~~~gi~~~LdyLk~~LGvt~I~L~Pi~-~~~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VI 260 (637)
T 1ji1_A 187 GGDLAGIDQKLGYIKKTLGANILYLNPIF-KAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLI 260 (637)
T ss_dssp CCCHHHHHHTHHHHHTTTCCCEEEESCCE-ECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEE
T ss_pred CcCHHHHHHhHHHHHhccCCCEEEECCCc-cCCCCCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEE
Confidence 5689999999999999 999999886544 222111 122 2346899999999999999 8 654
No 481
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=38.04 E-value=2.1e+02 Score=25.27 Aligned_cols=133 Identities=11% Similarity=0.168 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechhhH
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~et~ 217 (328)
..++.+.+.|+-. .+ |.....+.+ . .....++.+++..++..+........-.++..+.+..+|++.+.++....
T Consensus 77 ~~a~aa~~~G~~~-~~-~~~~~~l~~--~-~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~ 151 (349)
T 1p0k_A 77 SLARAASQAGIPL-AV-GSQMSALKD--P-SERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVI 151 (349)
T ss_dssp HHHHHHHHHTCCE-EC-CCCTTTTTC--H-HHHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTT
T ss_pred HHHHHHHHcCCcE-Ee-ccchhcccC--c-ccccceehhhhhCCCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccch
Confidence 4455566777653 22 222111222 1 11233334454444544433333121124555666778999987766543
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeee
Q 020304 218 KRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLG 283 (328)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~ 283 (328)
........ ...++.+++.++.+++. .++++..-+ +|.+-+.++ ++.+.+.|++.+.+.
T Consensus 152 ~~~~~~~~--~~~~~~~~~~i~~vr~~-~~~Pv~vK~-~~~~~~~~~----a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 152 QEIVMPEG--DRSFSGALKRIEQICSR-VSVPVIVKE-VGFGMSKAS----AGKLYEAGAAAVDIG 209 (349)
T ss_dssp TTC----------CTTHHHHHHHHHHH-CSSCEEEEE-ESSCCCHHH----HHHHHHHTCSEEEEE
T ss_pred hhhcCCCC--CcchHHHHHHHHHHHHH-cCCCEEEEe-cCCCCCHHH----HHHHHHcCCCEEEEc
Confidence 32111000 11222366777777652 356543322 255566443 567778899988884
No 482
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=37.94 E-value=41 Score=28.66 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeec
Q 020304 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~ 213 (328)
++++.+.+.|++++.+....+..........=.+.++.+++.. .++.+.+ -+++ +.+.+..+.++|.+.+.++
T Consensus 146 ~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvA--iGGI-~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 146 DQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFA--IGGI-NAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp HHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEE--ESSC-CTTTHHHHHHTTCCCEEES
T ss_pred HHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEE--ecCC-CHHHHHHHHHcCCCEEEEe
Confidence 4566777799999988543222111100001134455555432 2455543 3444 8888999999999999874
No 483
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=37.88 E-value=1.5e+02 Score=26.15 Aligned_cols=81 Identities=7% Similarity=0.064 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCcEEEEEecc-CCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 138 NTAKAIASWGVDYIVLTSVD-RDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 138 ~~~~~~~~~G~~~i~l~gg~-~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
+++.++.+.|++.+-+.=|+ +..|..+++.-=.++++.|++.. +++.+. +..+.-..++.+++..+.|+..++++-+
T Consensus 175 eea~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLV-lHGgSG~p~e~i~~ai~~GV~KiNi~Td 253 (306)
T 3pm6_A 175 EESEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLV-LHGADPFTKEIFEKCIERGVAKVNVNRA 253 (306)
T ss_dssp HHHHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEE-ECSCTTCCHHHHHHHHHTTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEE-eeCCCCCCHHHHHHHHHcCCeEEEeChH
Confidence 34444557898866553232 22232111111123444454432 356664 4433335799999999999999999766
Q ss_pred hHHH
Q 020304 216 TVKR 219 (328)
Q Consensus 216 t~~~ 219 (328)
....
T Consensus 254 l~~a 257 (306)
T 3pm6_A 254 VNNE 257 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 484
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=37.78 E-value=2.3e+02 Score=25.55 Aligned_cols=149 Identities=9% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHCCCcEEEEEeccCCCCCCCc-HHHHHHHHHHHHH-hCCCcEEEEEeCCCCCCH----HHHHHHHHc
Q 020304 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG-SGHFARTVKAMKK-QKPDIMVECLTSDFRGDL----RAVETLVHS 205 (328)
Q Consensus 132 ~~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~-~~~l~~li~~ik~-~~~~~~i~~~t~~~~~~~----e~l~~L~~a 205 (328)
++++..+.++.+.+.|++.+-+-.| .+ .+...+.++++++ ..+++.+.+-.+... +. +.++.|.+.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~g-------~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~-~~~~a~~~~~~l~~~ 220 (391)
T 2qgy_A 149 DTNDYLRQIEKFYGKKYGGIKIYPM-------LDSLSISIQFVEKVREIVGDELPLMLDLAVPE-DLDQTKSFLKEVSSF 220 (391)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCC-------CSSHHHHHHHHHHHHHHHCSSSCEEEECCCCS-CHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccC-------CChHHHHHHHHHHHHHHhCCCCEEEEEcCCCC-CHHHHHHHHHHHHhc
Q ss_pred CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecc
Q 020304 206 GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQY 285 (328)
Q Consensus 206 G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~ 285 (328)
|++.+- .--..+-++.++.+++ .+.+-+-.+|+..+..+..+.+++-.++.+.+
T Consensus 221 ~i~~iE----------------qP~~~~d~~~~~~l~~-------~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i--- 274 (391)
T 2qgy_A 221 NPYWIE----------------EPVDGENISLLTEIKN-------TFNMKVVTGEKQSGLVHFRELISRNAADIFNP--- 274 (391)
T ss_dssp CCSEEE----------------CSSCTTCHHHHHHHHH-------HCSSCEEECTTCCSHHHHHHHHHTTCCSEECC---
T ss_pred CCCeEe----------------CCCChhhHHHHHHHHh-------hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE---
Q ss_pred cCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeec
Q 020304 286 LQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASG 322 (328)
Q Consensus 286 l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g 322 (328)
....-=...+..++.++|++.|+..+..+
T Consensus 275 --------k~~~~GGit~~~~i~~~A~~~gi~~~~~~ 303 (391)
T 2qgy_A 275 --------DISGMGGLIDIIEISNEASNNGIFISPHC 303 (391)
T ss_dssp --------BTTTSSCHHHHHHHHHHHHHTTCEECCBC
T ss_pred --------CcchhCCHHHHHHHHHHHHHCCCEEeccC
No 485
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=37.68 E-value=1.3e+02 Score=22.52 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEee-chhhHHHHHh
Q 020304 169 FARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH-NIETVKRLQR 222 (328)
Q Consensus 169 l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~-~~et~~~~~~ 222 (328)
-..++..+++.+|+..+.+..+ +++..+.|+++|++.+.. ..++...+.+
T Consensus 85 n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d~vi~p~~~~a~~i~~ 135 (140)
T 3fwz_A 85 AGEIVASARAKNPDIEIIARAH----YDDEVAYITERGANQVVMGEREIARTMLE 135 (140)
T ss_dssp HHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCSEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCCEEECchHHHHHHHHH
Confidence 3445667777778887765443 678889999999998765 3344455443
No 486
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=37.68 E-value=17 Score=31.38 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCCEEeeeccc
Q 020304 262 DDDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 262 ~e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
.+.+.+++.+..++|+..+++|.|.
T Consensus 50 ~~~l~~iv~~c~~~GI~~lTlYaFS 74 (249)
T 1f75_A 50 MQTVRKITRYASDLGVKYLTLYAFS 74 (249)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEC-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec
Confidence 5677788888888888888887765
No 487
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=37.62 E-value=1.9e+02 Score=25.20 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCcEEEEEec----c----CCCCCCCc-HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHc--
Q 020304 137 ENTAKAIASWGVDYIVLTSV----D----RDDIPDGG-SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-- 205 (328)
Q Consensus 137 ~~~~~~~~~~G~~~i~l~gg----~----~~~l~~~~-~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~a-- 205 (328)
.++++++.+.|.+-+++--+ . .......+ .+.+.++++.+++..|++.+.|.. +.+.+++.++...+.
T Consensus 173 ~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~g-GpIstpeDv~~~l~~t~ 251 (286)
T 2p10_A 173 PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHG-GPIANPEDARFILDSCQ 251 (286)
T ss_dssp HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEES-TTCCSHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecC-CCCCCHHHHHHHHhcCC
Confidence 35667777888887766322 1 11111112 467888888889988998876643 344477777777787
Q ss_pred CCcEEee
Q 020304 206 GLDVFAH 212 (328)
Q Consensus 206 G~~~i~~ 212 (328)
|++.+..
T Consensus 252 G~~G~~g 258 (286)
T 2p10_A 252 GCHGFYG 258 (286)
T ss_dssp TCCEEEE
T ss_pred CccEEEe
Confidence 8988876
No 488
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=37.57 E-value=87 Score=28.99 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=51.3
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCC--C-----CC------cHHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCHHHHH
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDI--P-----DG------GSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVE 200 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l--~-----~~------~~~~l~~li~~ik~~~~-~~~i~~~t~~~~~~~e~l~ 200 (328)
++.+.++.+.+.|++.|.++....... . .+ ..+.-.++++.+++... ++.+. ..+++.+.+.+.
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPII--g~GGI~s~eDa~ 361 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII--ASGGIFSGLDAL 361 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE--ECSSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEE--EECCCCCHHHHH
Confidence 578888899999999998865322111 0 01 12456688888888643 45553 456666776666
Q ss_pred HHHHcCCcEEeec
Q 020304 201 TLVHSGLDVFAHN 213 (328)
Q Consensus 201 ~L~~aG~~~i~~~ 213 (328)
++..+|.+.+.++
T Consensus 362 e~l~aGAd~VqIg 374 (415)
T 3i65_A 362 EKIEAGASVCQLY 374 (415)
T ss_dssp HHHHHTEEEEEES
T ss_pred HHHHcCCCEEEEc
Confidence 6667999999885
No 489
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=37.53 E-value=25 Score=34.51 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEeeecccC-CCCCC------cccC-CCCCHHHHHHHHHHHHhcCCceee
Q 020304 259 GESDDDLKEAMADLRSIDVDILTLGQYLQ-PTPLH------LTVK-EYVTPEKFDFWKAYGESIGFRYVA 320 (328)
Q Consensus 259 gEt~e~~~~~l~~l~~l~~~~i~i~~~l~-PTp~~------~~~~-~~~~~~~~~~l~~~~~~~G~~~~~ 320 (328)
|-+.+-+.+.|+.|++||++.|-++++.. |+.-. ..+. ..=+++++.+|.+.+++.|++.+.
T Consensus 235 gGdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIl 304 (645)
T 4aef_A 235 GGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVIL 304 (645)
T ss_dssp CCCHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEE
Confidence 56788899999999999999998876542 21111 0122 233689999999999999998764
No 490
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=37.51 E-value=14 Score=34.91 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHH
Q 020304 230 GYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAM 269 (328)
Q Consensus 230 ~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l 269 (328)
+.++..+.++.||+ .||.|..++++.+ +....-+.+..
T Consensus 101 t~~df~~Lv~~aH~--~Gi~VilD~V~NH~s~~~~~f~~~~ 139 (488)
T 2wc7_A 101 GNEAFKELLDAAHQ--RNIKVVLDGVFNHSSRGFFFFHDVL 139 (488)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEECCSBCCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCEEEEEeCCCcCCCcCHHHHHHH
Confidence 57899999999999 9999999999998 65544454443
No 491
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=37.51 E-value=1.2e+02 Score=26.61 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHH-HHHHh---CCCcEEEE-EeCCC--CCCH-----HHHH
Q 020304 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK-AMKKQ---KPDIMVEC-LTSDF--RGDL-----RAVE 200 (328)
Q Consensus 133 ~~ei~~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~-~ik~~---~~~~~i~~-~t~~~--~~~~-----e~l~ 200 (328)
.++..+.++.+.+.|++.|= .. +.|..+ .-.+++. .+++. ..++.+.. ..+.. ..+. .+-+
T Consensus 21 ~~~~~~~l~~Al~~Gi~~~D--TA--~~Yg~G---~sE~~lG~al~~~~~~r~~~~i~TK~~~~~~~~~~~~~i~~~~~~ 93 (327)
T 1gve_A 21 VTSSSASVRAFLQRGHTEID--TA--FVYANG---QSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQLET 93 (327)
T ss_dssp HHHHHHHHHHHHHTTCCEEE--CC--TTGGGG---HHHHHHTTSCCCTTSTTCCSEEEEEECSCTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEE--ch--hhcCCC---chHHHHHHHHhhcCCCCCeEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 45667888889999998543 12 234321 1222332 23211 12344431 11210 1233 3445
Q ss_pred HHHHcCCcEEe----echhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-CCCHHHHHHHHHHHHhC
Q 020304 201 TLVHSGLDVFA----HNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-GESDDDLKEAMADLRSI 275 (328)
Q Consensus 201 ~L~~aG~~~i~----~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-gEt~e~~~~~l~~l~~l 275 (328)
-|++.|+|.+- |..+ +...+++.+++++.+++ .|.. --+|+ ..+.+++.+.+....+.
T Consensus 94 SL~rL~~dyiDl~~lH~p~-----------~~~~~~e~~~al~~l~~--~Gki----r~iGvSn~~~~~l~~~~~~~~~~ 156 (327)
T 1gve_A 94 SLKRLQCPRVDLFYLHFPD-----------HGTPIEETLQACHQLHQ--EGKF----VELGLSNYVSWEVAEICTLCKKN 156 (327)
T ss_dssp HHHHTTCSCEEEEEECSCC-----------TTSCHHHHHHHHHHHHH--TTSE----EEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEeEEEecCCC-----------CCCCHHHHHHHHHHHHh--CCce----eEEEecCCCHHHHHHHHHHHHHc
Confidence 67777876543 2221 12357899999999999 8874 24677 78888888888777765
Q ss_pred CC---CEEeeecccCCCCCCcccCCCCCHHHHHHHHHHHHhcCCceeeeccccc
Q 020304 276 DV---DILTLGQYLQPTPLHLTVKEYVTPEKFDFWKAYGESIGFRYVASGPLVS 326 (328)
Q Consensus 276 ~~---~~i~i~~~l~PTp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~g~~~~ 326 (328)
|. ..+.+ .| +++.. . . -..+...+++.|+..++.+|+.+
T Consensus 157 g~~~~~~~Q~-~~---~~~~~----~--~--e~~l~~~~~~~gi~v~a~spL~~ 198 (327)
T 1gve_A 157 GWIMPTVYQG-MY---NAITR----Q--V--ETELFPCLRHFGLRFYAFNPLAG 198 (327)
T ss_dssp TCCCEEEEEE-EC---BTTBC----G--G--GTTHHHHHHHHTCEEEEECTTGG
T ss_pred CCCCeEEEec-cC---cceec----c--c--HHHHHHHHHHcCCeEEEeccccc
Confidence 52 33332 12 22211 0 0 12466789999999999999875
No 492
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=37.50 E-value=1e+02 Score=25.89 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCc-EEEEEeccCCCCCCCcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCHHHHHHHHHcCCcEEeechh
Q 020304 137 ENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (328)
Q Consensus 137 ~~~~~~~~~~G~~-~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~~e~l~~L~~aG~~~i~~~~e 215 (328)
...++.+.+.|.. .+++++.++ +.++.+++..|++.+..+... ...+....+++.|++.+..+..
T Consensus 132 ~~v~~~l~~~~~~~~vii~SF~~------------~~l~~~~~~~p~~~~~~l~~~--~~~~~~~~~~~~~~~~i~~~~~ 197 (252)
T 2pz0_A 132 EKLIKAIKEYNFEERVIISSFNH------------YSLRDVKKMAPHLKIGLLYQC--GLVEPWHMALRMEAYSLHPFYF 197 (252)
T ss_dssp HHHHHHHHHTTCTTTEEEEESBH------------HHHHHHHHHCTTSEEEEEECS--BCSSTHHHHHHTTCSEEEEBGG
T ss_pred HHHHHHHHhcCCCCCEEEEeCCH------------HHHHHHHHHCCCCCEEEEecC--ccccHHHHHHHcCCeEEecchh
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEe
Q 020304 216 TVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILT 281 (328)
Q Consensus 216 t~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~ 281 (328)
.++ -+.++.+++ .|+.+.+..+ +=.+.++.+.++|++.+.
T Consensus 198 ~~~----------------~~~v~~~~~--~G~~v~~wTv--------n~~~~~~~l~~~GvdgIi 237 (252)
T 2pz0_A 198 NII----------------PELVEGCKK--NGVKLFPWTV--------DRKEDMERMIKAGVDGII 237 (252)
T ss_dssp GCC----------------HHHHHHHHH--TTCEECCBCC--------CSHHHHHHHHHHTCSEEE
T ss_pred cCC----------------HHHHHHHHH--CCCEEEEECC--------CCHHHHHHHHHcCCCEEE
No 493
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=37.43 E-value=1.6e+02 Score=24.56 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred chHHHHHHHHHCCCcEEEEEeccCCCC--CCCcHHHHHHHHHHHHHhCCCcE---EEEEeCCCCC---------------
Q 020304 135 EPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIM---VECLTSDFRG--------------- 194 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l~gg~~~~l--~~~~~~~l~~li~~ik~~~~~~~---i~~~t~~~~~--------------- 194 (328)
.+.+.++.+++.|++.|-+....+..+ .....+.+.++-+.+++. ++. +.+..+-...
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~ 90 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKH--GIDWENAFCHSGYLINLASPKDDIWQKSVEL 90 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHH--TCCGGGEEEECCTTCCTTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHc--CCCcceeEEecccccccCCCCHHHHHHHHHH
Q ss_pred CHHHHHHHHHcCCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEE----cCCCHHHHHHHHH
Q 020304 195 DLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLG----LGESDDDLKEAMA 270 (328)
Q Consensus 195 ~~e~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivG----lgEt~e~~~~~l~ 270 (328)
-.+.++..++.|+..+.+..-....... ...++...+.++.+.+...|+.+..--+-| ++.|.+++.+.++
T Consensus 91 ~~~~i~~A~~lG~~~v~~~~g~~~~~~~-----~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~ 165 (287)
T 2x7v_A 91 LKKEVEICRKLGIRYLNIHPGSHLGTGE-----EEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGYKLEQLKKIRD 165 (287)
T ss_dssp HHHHHHHHHHHTCCEEEECCEECTTSCH-----HHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCH-----HHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCCCHHHHHHHHH
Q ss_pred HH
Q 020304 271 DL 272 (328)
Q Consensus 271 ~l 272 (328)
.+
T Consensus 166 ~~ 167 (287)
T 2x7v_A 166 LV 167 (287)
T ss_dssp HC
T ss_pred hc
No 494
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=37.40 E-value=45 Score=28.64 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=55.3
Q ss_pred chH-HHHHHHHHCCCcEEEEEeccCCCCCCCcHHHHHHHHHHHHHhCC---CcEEEEEeCCCCCCHHHHHHHHHc--CCc
Q 020304 135 EPE-NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP---DIMVECLTSDFRGDLRAVETLVHS--GLD 208 (328)
Q Consensus 135 ei~-~~~~~~~~~G~~~i~l~gg~~~~l~~~~~~~l~~li~~ik~~~~---~~~i~~~t~~~~~~~e~l~~L~~a--G~~ 208 (328)
++. +.++.+.+. +.++.+++-+.+....+ + =.++++.+++..| ++.+.+ +++..+.+.++.+.+. |++
T Consensus 158 ~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G-~--d~eli~~l~~~~~~~~~iPVIa--sGGi~s~ed~~~l~~~~~G~~ 231 (260)
T 2agk_A 158 ELNADTFRELRKY-TNEFLIHAADVEGLCGG-I--DELLVSKLFEWTKDYDDLKIVY--AGGAKSVDDLKLVDELSHGKV 231 (260)
T ss_dssp EESHHHHHHHTTT-CSEEEEEC-------CC-C--CHHHHHHHHHHHTTCSSCEEEE--ESCCCCTHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHh-cCEEEEEeeccccCcCC-C--CHHHHHHHHHhhcccCCceEEE--eCCCCCHHHHHHHHHhcCCCC
Confidence 445 788888888 99999987554322211 1 1356666666533 566644 5566677888888877 999
Q ss_pred EEeechhhHHHHHhhhcCCC-CCHHHHHHHHH
Q 020304 209 VFAHNIETVKRLQRIVRDPR-AGYEQSLEVLK 239 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~-~~~~~~l~~i~ 239 (328)
.+.++--. .++. .. .++++.++.++
T Consensus 232 gvivg~al--~l~~----g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 232 DLTFGSSL--DIFG----GNLVKFEDCCRWNE 257 (260)
T ss_dssp EEECCTTB--GGGT----CSSBCHHHHHHHHH
T ss_pred EEEeeCCH--HHcC----CCCCCHHHHHHHHH
Confidence 98875211 1122 24 67777776654
No 495
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=37.09 E-value=53 Score=30.12 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=54.6
Q ss_pred CHHHHHHHHHc-CCcEEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEc-------CC----CH
Q 020304 195 DLRAVETLVHS-GLDVFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGL-------GE----SD 262 (328)
Q Consensus 195 ~~e~l~~L~~a-G~~~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl-------gE----t~ 262 (328)
+++.++.++++ |++.+-+++.-.. .+...+.++..+.-+.+.+ .|+.+.+.--+.. .+ ..
T Consensus 32 d~~~L~~i~q~~G~~gIe~~l~~~~------~g~~w~~~~i~~lk~~l~~--~GL~i~~i~s~~~~~~i~~~~~~r~~~i 103 (386)
T 3bdk_A 32 DPVTLEEIKAIPGMQGIVTAVYDVP------VGQAWPLENILELKKMVEE--AGLEITVIESIPVHEDIKQGKPNRDALI 103 (386)
T ss_dssp CSSCHHHHHTSTTCCEEEECCCSSC------SSSCCCHHHHHHHHHHHHT--TTCEEEEEECCCCCHHHHTTCTTHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeCCcccC------CCCCCCHHHHHHHHHHHHH--cCCEEEEEeccccccccccCcHHHHHHH
Confidence 67799999999 9999887542110 0113455677777777778 9998654211100 11 23
Q ss_pred HHHHHHHHHHHhCCCCEEeeeccc
Q 020304 263 DDLKEAMADLRSIDVDILTLGQYL 286 (328)
Q Consensus 263 e~~~~~l~~l~~l~~~~i~i~~~l 286 (328)
+.+.++++.+.++|+..+.. +|+
T Consensus 104 e~~k~~i~~aa~lGi~~v~~-nf~ 126 (386)
T 3bdk_A 104 ENYKTSIRNVGAAGIPVVCY-NFM 126 (386)
T ss_dssp HHHHHHHHHHHTTTCCEEEE-CCC
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCc
Confidence 56778899999999998866 565
No 496
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Probab=37.09 E-value=78 Score=30.21 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcEEeechhhHHHHHhhhc-CCCCC---HHHHHHHHHHHHHhCCCCeEEEeEE
Q 020304 196 LRAVETLVHSGLDVFAHNIETVKRLQRIVR-DPRAG---YEQSLEVLKHAKLSKKGLITKSSIM 255 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~~et~~~~~~~~~-~~~~~---~~~~l~~i~~~~~~~~Gi~v~~~~i 255 (328)
+|-++.|+++|++.+.+++ +-.++...-. ....+ ++-+-+.++.+++ .||.+..++.
T Consensus 81 ~eDi~lm~~~G~~~~R~si-sWsRi~P~g~~~g~~n~~G~~~y~~lid~l~~--~GI~p~vtL~ 141 (512)
T 1v08_A 81 KTDVRLLKEMGMDAYRFSI-SWPRILPKGTKEGGINPDGIKYYRNLINLLLE--NGIEPYVTIF 141 (512)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CHHHHSTTSSTTTCCCHHHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred HHHHHHHHHhCCCeEeccc-CHhhhCCCCCcCCCcCHHHHHHHHHHHHHHHH--CCCEEEEEeC
Confidence 6889999999999999998 5566542210 01345 7788899999999 9999766553
No 497
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=37.03 E-value=2.2e+02 Score=25.19 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=39.2
Q ss_pred HHHHHHHcCCcEEeechhhHHHHHhhhcCCCC-CHHHHHHHHHHHHHhC-CCCeEEEeEEEEcCCCHHHHHHHHHHHHhC
Q 020304 198 AVETLVHSGLDVFAHNIETVKRLQRIVRDPRA-GYEQSLEVLKHAKLSK-KGLITKSSIMLGLGESDDDLKEAMADLRSI 275 (328)
Q Consensus 198 ~l~~L~~aG~~~i~~~~et~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~-~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l 275 (328)
.++.+.++|++.+-+.. ++ +.+.-++.++.+++.. .++.+..+. .-+-|.++..+.++.+.++
T Consensus 151 ~a~~~~~~Gf~~iKik~-------------g~~~~~~~~e~v~avr~a~g~~~~l~vDa--n~~~~~~~a~~~~~~l~~~ 215 (359)
T 1mdl_A 151 RAVTAAELGFRAVKTRI-------------GYPALDQDLAVVRSIRQAVGDDFGIMVDY--NQSLDVPAAIKRSQALQQE 215 (359)
T ss_dssp HHHHHHHTTCSEEEEEC-------------CCSSHHHHHHHHHHHHHHHCSSSEEEEEC--TTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEec-------------CCCCHHHHHHHHHHHHHHhCCCCEEEEEC--CCCCCHHHHHHHHHHHHHh
Confidence 34555667777766532 12 4454555555555532 345543332 1156778888888888888
Q ss_pred CCCEE
Q 020304 276 DVDIL 280 (328)
Q Consensus 276 ~~~~i 280 (328)
+++++
T Consensus 216 ~i~~i 220 (359)
T 1mdl_A 216 GVTWI 220 (359)
T ss_dssp TCSCE
T ss_pred CCCeE
Confidence 77654
No 498
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=37.00 E-value=25 Score=32.68 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEEc
Q 020304 229 AGYEQSLEVLKHAKLSKKGLITKSSIMLGL 258 (328)
Q Consensus 229 ~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGl 258 (328)
.+.++..+.++.||+ .||.|..++++.+
T Consensus 62 Gt~~dfk~Lv~~aH~--~Gi~VilD~V~NH 89 (448)
T 1g94_A 62 GNRAQFIDMVNRCSA--AGVDIYVDTLINH 89 (448)
T ss_dssp BCHHHHHHHHHHHHH--TTCEEEEEEECSE
T ss_pred CCHHHHHHHHHHHHH--CCCEEEEEEeecc
Confidence 478999999999999 9999999999988
No 499
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=36.99 E-value=1.2e+02 Score=26.18 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHCCCcEEEEEecc-----CC-C-----------CCC-CcHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 020304 134 MEPENTAKAIASWGVDYIVLTSVD-----RD-D-----------IPD-GGSGHFARTVKAMKKQKPDIMVECLTSDFRGD 195 (328)
Q Consensus 134 ~ei~~~~~~~~~~G~~~i~l~gg~-----~~-~-----------l~~-~~~~~l~~li~~ik~~~~~~~i~~~t~~~~~~ 195 (328)
.++.+.++.+.+.|++.+.+++.. .. . +.. .......++++.+++.. ++.+. .++++.+
T Consensus 176 ~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvi--a~GGI~~ 252 (311)
T 1ep3_A 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPII--GMGGVAN 252 (311)
T ss_dssp SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEE--ECSSCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEE--EECCcCC
Confidence 456777889999999999886521 00 0 000 00123457788888763 55553 4566668
Q ss_pred HHHHHHHHHcCCcEEeec
Q 020304 196 LRAVETLVHSGLDVFAHN 213 (328)
Q Consensus 196 ~e~l~~L~~aG~~~i~~~ 213 (328)
.+.+..+.++|.+.+.++
T Consensus 253 ~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 253 AQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 888888878999999874
No 500
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=36.91 E-value=2.4e+02 Score=25.52 Aligned_cols=147 Identities=7% Similarity=-0.083 Sum_probs=82.0
Q ss_pred chHHHHHHHHHCCCcEEEE-EeccCCCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCH----HHHHHHHHcCCc
Q 020304 135 EPENTAKAIASWGVDYIVL-TSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDL----RAVETLVHSGLD 208 (328)
Q Consensus 135 ei~~~~~~~~~~G~~~i~l-~gg~~~~l~~~~~~~l~~li~~ik~~~-~~~~i~~~t~~~~~~~----e~l~~L~~aG~~ 208 (328)
+..+.++.+.+.|++.+.+ -.|... .+.+.-.+.++++++.. +++.+.+-.|...-+. +.++.|.+.|++
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~~----~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~ 230 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPNDK----VSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLY 230 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCTT----SCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCS
T ss_pred HHHHHHHHHHHcCCCEEEecccCCCc----cCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCe
Confidence 3445777788899999988 333211 12466778899998864 6777655444332132 456666667776
Q ss_pred EEeechhhHHHHHhhhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEEcCCCHHHHHHHHHHHHhCCCCEEeeecccCC
Q 020304 209 VFAHNIETVKRLQRIVRDPRAGYEQSLEVLKHAKLSKKGLITKSSIMLGLGESDDDLKEAMADLRSIDVDILTLGQYLQP 288 (328)
Q Consensus 209 ~i~~~~et~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~Gi~v~~~~ivGlgEt~e~~~~~l~~l~~l~~~~i~i~~~l~P 288 (328)
.+-= -+. ..+++ .++.+++. .++++ + .+|+..+..+..+.++.-.++.+.+- +
T Consensus 231 ~iEe----------P~~--~~~~~----~~~~l~~~-~~iPI----a--~dE~~~~~~~~~~~l~~~~~d~v~~k----~ 283 (394)
T 3mqt_A 231 FIEA----------CLQ--HDDLI----GHQKLAAA-INTRL----C--GAEMSTTRFEAQEWLEKTGISVVQSD----Y 283 (394)
T ss_dssp EEES----------CSC--TTCHH----HHHHHHHH-SSSEE----E--ECTTCCHHHHHHHHHHHHCCSEECCC----T
T ss_pred EEEC----------CCC--cccHH----HHHHHHhh-CCCCE----E--eCCCcCCHHHHHHHHHcCCCCeEecC----c
Confidence 6531 011 12332 33344431 45543 2 25655555555555555557765551 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhcCCcee
Q 020304 289 TPLHLTVKEYVTPEKFDFWKAYGESIGFRYV 319 (328)
Q Consensus 289 Tp~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 319 (328)
+.. +. ..+..++.++|++.|+..+
T Consensus 284 ~~~-----GG--it~~~~ia~~A~~~gi~~~ 307 (394)
T 3mqt_A 284 NRC-----GG--VTELLRIMDICEHHNAQLM 307 (394)
T ss_dssp TTS-----SC--HHHHHHHHHHHHHHTCEEC
T ss_pred ccc-----CC--HHHHHHHHHHHHHcCCEEe
Confidence 221 12 3446677888888888876
Done!