Query 020305
Match_columns 328
No_of_seqs 307 out of 1604
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 99.9 1.3E-28 4.5E-33 200.9 6.5 100 32-132 2-102 (107)
2 2rq5_A Protein jumonji; develo 99.9 3.6E-27 1.2E-31 196.3 10.2 89 33-121 12-101 (121)
3 2jrz_A Histone demethylase jar 99.9 4.8E-27 1.6E-31 194.7 10.7 93 28-121 6-98 (117)
4 2eqy_A RBP2 like, jumonji, at 99.9 5.4E-27 1.8E-31 195.7 10.4 97 24-121 4-100 (122)
5 2cxy_A BAF250B subunit, HBAF25 99.9 7.4E-27 2.5E-31 195.7 11.3 98 32-130 20-118 (125)
6 2jxj_A Histone demethylase jar 99.9 3.2E-27 1.1E-31 189.0 8.2 91 30-121 4-94 (96)
7 2lm1_A Lysine-specific demethy 99.9 5.6E-27 1.9E-31 191.2 8.7 95 26-121 8-102 (107)
8 1c20_A DEAD ringer protein; DN 99.9 2.3E-26 7.9E-31 193.4 9.8 90 32-121 21-111 (128)
9 1kkx_A Transcription regulator 99.9 4.4E-26 1.5E-30 190.4 9.1 90 26-120 11-101 (123)
10 2li6_A SWI/SNF chromatin-remod 99.9 5.5E-26 1.9E-30 188.0 8.0 97 25-127 11-108 (116)
11 2kk0_A AT-rich interactive dom 99.9 1E-25 3.4E-30 193.3 9.5 89 33-121 34-123 (145)
12 2co9_A Thymus high mobility gr 99.9 1.2E-22 4.3E-27 164.0 12.4 89 237-325 7-96 (102)
13 2eqz_A High mobility group pro 99.9 4E-22 1.4E-26 156.0 10.5 77 239-315 7-86 (86)
14 1k99_A Upstream binding factor 99.9 6.7E-22 2.3E-26 159.0 8.2 82 239-320 2-84 (99)
15 2lhj_A High mobility group pro 99.9 2.6E-22 8.8E-27 160.5 4.6 84 234-317 9-95 (97)
16 1cg7_A Protein (NON histone pr 99.9 3.7E-22 1.2E-26 158.6 5.2 82 237-318 10-92 (93)
17 1hme_A High mobility group pro 99.8 1.1E-21 3.8E-26 150.0 6.9 75 242-316 1-76 (77)
18 2crj_A SWI/SNF-related matrix- 99.8 4.6E-21 1.6E-25 151.8 10.0 78 242-319 2-80 (92)
19 2cs1_A PMS1 protein homolog 1; 99.8 4.2E-21 1.4E-25 152.1 9.6 80 242-321 2-82 (92)
20 1wgf_A Upstream binding factor 99.8 1.2E-21 4.1E-26 154.7 5.0 77 236-312 9-86 (90)
21 1aab_A High mobility group pro 99.8 2E-21 6.7E-26 150.9 4.9 76 242-317 2-80 (83)
22 2e6o_A HMG box-containing prot 99.8 5.2E-21 1.8E-25 150.0 7.0 76 240-315 10-86 (87)
23 3nm9_A HMG-D, high mobility gr 99.8 2.1E-20 7.3E-25 141.7 9.4 71 245-317 1-72 (73)
24 1hry_A Human SRY; DNA, DNA-bin 99.8 6.5E-21 2.2E-25 145.3 6.4 72 244-315 1-73 (76)
25 1ckt_A High mobility group 1 p 99.8 3.3E-20 1.1E-24 139.5 7.1 68 247-314 1-71 (71)
26 1wxl_A Single-strand recogniti 99.8 2.3E-20 7.9E-25 141.5 6.2 71 245-317 1-72 (73)
27 4a3n_A Transcription factor SO 99.8 4.8E-20 1.6E-24 138.4 6.4 70 246-315 1-71 (71)
28 2gzk_A Sex-determining region 99.8 1.5E-19 5.2E-24 156.1 10.5 77 240-316 81-158 (159)
29 1wz6_A HMG-box transcription f 99.8 2.3E-20 7.8E-25 144.5 4.5 76 243-318 3-79 (82)
30 1v64_A Nucleolar transcription 99.8 1.5E-19 5.1E-24 147.6 9.6 79 239-321 8-88 (108)
31 1j46_A SRY, sex-determining re 99.8 7.6E-20 2.6E-24 142.7 7.5 77 244-320 1-78 (85)
32 1gt0_D Transcription factor SO 99.8 1.1E-19 3.9E-24 139.8 7.1 74 246-319 1-75 (80)
33 4euw_A Transcription factor SO 99.8 1.4E-19 4.8E-24 147.1 7.3 78 241-318 23-101 (106)
34 1l8y_A Upstream binding factor 99.8 2.2E-19 7.5E-24 142.0 7.9 75 246-320 3-77 (91)
35 3f27_D Transcription factor SO 99.8 1.3E-19 4.5E-24 140.3 6.5 75 244-318 3-78 (83)
36 3fgh_A Transcription factor A, 99.8 2.7E-19 9.2E-24 133.3 7.8 66 246-314 1-66 (67)
37 2yrq_A High mobility group pro 99.8 4.3E-19 1.5E-23 155.5 9.5 78 240-317 94-172 (173)
38 3u2b_C Transcription factor SO 99.8 2E-19 7E-24 137.9 6.4 73 246-318 1-74 (79)
39 2lef_A LEF-1 HMG, protein (lym 99.8 3.5E-19 1.2E-23 139.1 7.3 73 246-318 1-74 (86)
40 1i11_A Transcription factor SO 99.8 2.4E-19 8.1E-24 138.5 5.6 75 245-319 2-77 (81)
41 1v63_A Nucleolar transcription 99.8 3E-18 1E-22 138.2 10.5 77 244-322 5-82 (101)
42 2yrq_A High mobility group pro 99.7 5.6E-18 1.9E-22 148.4 9.8 81 237-317 5-88 (173)
43 2d7l_A WD repeat and HMG-box D 99.7 1.2E-17 4E-22 129.6 6.6 62 243-304 1-64 (81)
44 3tq6_A Transcription factor A, 99.7 3.7E-18 1.3E-22 154.9 2.3 76 240-318 107-182 (214)
45 3tmm_A Transcription factor A, 99.7 2.4E-17 8.1E-22 151.8 7.7 80 241-320 35-115 (238)
46 2yuk_A Myeloid/lymphoid or mix 99.7 2E-18 6.8E-23 136.4 -0.3 68 239-310 14-84 (90)
47 2cto_A Novel protein; high mob 99.7 2.2E-17 7.4E-22 131.3 5.5 68 242-311 5-76 (93)
48 3tmm_A Transcription factor A, 99.7 4E-18 1.4E-22 157.0 1.4 77 239-318 138-214 (238)
49 3tq6_A Transcription factor A, 99.7 5.9E-17 2E-21 147.0 8.7 77 244-320 6-83 (214)
50 2gzk_A Sex-determining region 99.5 5.5E-15 1.9E-19 127.4 7.1 72 245-316 2-74 (159)
51 1ity_A TRF1; helix-turn-helix, 76.8 2.4 8.2E-05 30.5 3.7 41 66-116 20-60 (69)
52 1gvd_A MYB proto-oncogene prot 76.2 2.1 7.1E-05 29.0 3.1 39 66-116 13-51 (52)
53 2dim_A Cell division cycle 5-l 73.5 2.7 9.2E-05 30.3 3.3 39 66-116 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 72.0 3.2 0.00011 28.0 3.2 39 66-116 13-51 (52)
55 1x41_A Transcriptional adaptor 71.0 3.9 0.00013 28.6 3.5 38 66-115 18-55 (60)
56 2d9a_A B-MYB, MYB-related prot 68.8 4.2 0.00014 28.3 3.3 39 66-116 18-56 (60)
57 1w0t_A Telomeric repeat bindin 68.7 5.4 0.00018 27.0 3.8 39 66-114 12-50 (53)
58 3sjm_A Telomeric repeat-bindin 59.2 9.8 0.00034 27.1 3.8 40 66-115 21-60 (64)
59 2elk_A SPCC24B10.08C protein; 58.6 9.3 0.00032 26.5 3.5 39 66-115 19-57 (58)
60 2yum_A ZZZ3 protein, zinc fing 57.8 9.8 0.00034 27.6 3.7 47 66-119 18-64 (75)
61 2din_A Cell division cycle 5-l 52.4 18 0.00063 25.4 4.3 40 66-119 19-58 (66)
62 2cu7_A KIAA1915 protein; nucle 49.0 17 0.00058 26.2 3.7 41 66-119 19-59 (72)
63 2k9n_A MYB24; R2R3 domain, DNA 46.6 15 0.00051 28.5 3.3 39 66-116 11-49 (107)
64 2yus_A SWI/SNF-related matrix- 46.3 16 0.00055 27.1 3.3 36 65-113 27-62 (79)
65 1gv2_A C-MYB, MYB proto-oncoge 40.7 19 0.00065 27.6 3.0 38 66-115 14-51 (105)
66 2qgu_A Probable signal peptide 34.4 24 0.00082 30.9 3.0 46 271-316 70-118 (211)
67 2k9n_A MYB24; R2R3 domain, DNA 34.1 41 0.0014 25.9 4.0 41 66-119 63-103 (107)
68 1gv2_A C-MYB, MYB proto-oncoge 33.0 35 0.0012 26.0 3.5 38 65-115 65-102 (105)
69 2o37_A Protein SIS1; HSP40, J- 32.7 59 0.002 24.2 4.6 35 260-294 27-64 (92)
70 1h8a_C AMV V-MYB, MYB transfor 31.8 36 0.0012 27.0 3.5 39 65-115 36-74 (128)
71 3ukx_C Bimax2 peptide; arm rep 30.4 34 0.0011 20.0 2.1 8 244-251 17-24 (28)
72 2lpy_A Matrix protein P10; GAG 28.3 1.2E+02 0.004 24.6 5.9 79 33-118 6-93 (124)
73 1bax_A M-PMV MA, M-PMV matrix 28.2 43 0.0015 25.9 3.1 53 35-94 9-64 (94)
74 2och_A Hypothetical protein DN 26.3 74 0.0025 22.4 4.0 38 260-297 27-68 (73)
75 2cqr_A RSGI RUH-043, DNAJ homo 26.3 60 0.002 23.7 3.5 40 67-115 29-68 (73)
76 2do5_A Splicing factor 3B subu 25.8 59 0.002 22.3 3.1 28 32-59 29-56 (58)
77 2ltp_A Nuclear receptor corepr 30.8 15 0.00052 27.7 0.0 30 85-119 37-66 (89)
78 2yua_A Williams-beuren syndrom 24.7 1.1E+02 0.0036 23.1 4.9 36 260-295 36-77 (99)
79 2cqq_A RSGI RUH-037, DNAJ homo 24.6 80 0.0027 22.9 3.9 42 65-116 17-58 (72)
80 3zqc_A MYB3; transcription-DNA 24.4 65 0.0022 25.6 3.8 38 66-116 64-101 (131)
81 1h8a_C AMV V-MYB, MYB transfor 23.4 61 0.0021 25.6 3.4 37 66-115 89-125 (128)
82 2lo0_A Uncharacterized protein 23.0 40 0.0014 25.0 1.9 17 32-48 37-53 (75)
83 1hdj_A Human HSP40, HDJ-1; mol 22.6 1.4E+02 0.0049 21.0 5.0 35 260-294 22-61 (77)
84 3osg_A MYB21; transcription-DN 21.4 69 0.0024 25.3 3.3 38 65-115 20-57 (126)
85 2ckx_A NGTRF1, telomere bindin 21.0 1E+02 0.0035 22.9 4.0 40 66-115 10-51 (83)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=1.3e-28 Score=200.93 Aligned_cols=100 Identities=28% Similarity=0.482 Sum_probs=93.3
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 020305 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (328)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y 110 (328)
++++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++++++++++.|+++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 478999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhhhhhccCCCCCC
Q 020305 111 LTLLYHYEQVHFFKMQGPPCVP 132 (328)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~~~~ 132 (328)
++||++||+ ++.+.++.+.++
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~ 102 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPP 102 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCT
T ss_pred HHHHHHHHH-HHcCCCCCCCCC
Confidence 999999999 556776666554
No 2
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=3.6e-27 Score=196.28 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHH
Q 020305 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (328)
Q Consensus 33 ~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~ 111 (328)
....|+++|.+||+.+|++| ++|+|+|++||||+||.+|+++|||++||.+++|++||..||||++++++++.|+.+|.
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 46789999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhh
Q 020305 112 TLLYHYEQVH 121 (328)
Q Consensus 112 k~L~~yE~~~ 121 (328)
+||++||++.
T Consensus 92 k~L~~YE~~~ 101 (121)
T 2rq5_A 92 QYLLSYDSLS 101 (121)
T ss_dssp TTHHHHHHCC
T ss_pred HHhHHHHCcC
Confidence 9999999854
No 3
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=4.8e-27 Score=194.69 Aligned_cols=93 Identities=27% Similarity=0.560 Sum_probs=89.0
Q ss_pred CcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHH
Q 020305 28 EDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLR 107 (328)
Q Consensus 28 e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk 107 (328)
|+.++++..|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|++ +++++.||
T Consensus 6 e~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk 84 (117)
T 2jrz_A 6 EAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLR 84 (117)
T ss_dssp HTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHHhhHHHHhhh
Q 020305 108 KHYLTLLYHYEQVH 121 (328)
Q Consensus 108 ~~Y~k~L~~yE~~~ 121 (328)
.+|.+||++||++.
T Consensus 85 ~~Y~k~L~~yE~~~ 98 (117)
T 2jrz_A 85 SHYERIVYPYEMYQ 98 (117)
T ss_dssp HHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999965
No 4
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=5.4e-27 Score=195.75 Aligned_cols=97 Identities=26% Similarity=0.465 Sum_probs=90.5
Q ss_pred CCCCCcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHH
Q 020305 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (328)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as 103 (328)
+-+.|+.+++++.|+++|.+||+.+|++|++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|++ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 345677889999999999999999999999999999999999999999999999999999999999999999974 5788
Q ss_pred HHHHHHHHHhhHHHHhhh
Q 020305 104 FVLRKHYLTLLYHYEQVH 121 (328)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~ 121 (328)
+.||.+|++||++||++.
T Consensus 83 ~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 83 SHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999943
No 5
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=7.4e-27 Score=195.65 Aligned_cols=98 Identities=30% Similarity=0.473 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 020305 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (328)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y 110 (328)
.+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++|+.+++|.+|+..||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 577889999999999999999 799999999999999999999999999999999999999999996 478999999999
Q ss_pred HHhhHHHHhhhhhhccCCCC
Q 020305 111 LTLLYHYEQVHFFKMQGPPC 130 (328)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~~ 130 (328)
++||++||+++.+++..++.
T Consensus 99 ~k~L~~yE~~~~~g~~~p~~ 118 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPPE 118 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCCS
T ss_pred HHHHHHHHHHHHcCCCCChh
Confidence 99999999998888865543
No 6
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=189.01 Aligned_cols=91 Identities=35% Similarity=0.618 Sum_probs=86.4
Q ss_pred ccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHH
Q 020305 30 VSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKH 109 (328)
Q Consensus 30 ~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~ 109 (328)
.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+++++ ++++.|+++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999876 578899999
Q ss_pred HHHhhHHHHhhh
Q 020305 110 YLTLLYHYEQVH 121 (328)
Q Consensus 110 Y~k~L~~yE~~~ 121 (328)
|++||++||++.
T Consensus 83 Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 83 YERILYPYELFQ 94 (96)
T ss_dssp HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999964
No 7
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=5.6e-27 Score=191.17 Aligned_cols=95 Identities=25% Similarity=0.477 Sum_probs=89.4
Q ss_pred CCCcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHH
Q 020305 26 SHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFV 105 (328)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~ 105 (328)
+.++.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|++ +++++.
T Consensus 8 el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~ 86 (107)
T 2lm1_A 8 ELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGAT 86 (107)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHH
T ss_pred hccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHH
Confidence 4456678899999999999999999999999999999999999999999999999999999999999999975 789999
Q ss_pred HHHHHHHhhHHHHhhh
Q 020305 106 LRKHYLTLLYHYEQVH 121 (328)
Q Consensus 106 Lk~~Y~k~L~~yE~~~ 121 (328)
|+.+|.+||++||++.
T Consensus 87 lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 87 LKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 9999999999999965
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=2.3e-26 Score=193.37 Aligned_cols=90 Identities=33% Similarity=0.529 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHH
Q 020305 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (328)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y 110 (328)
++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++++++++++.||.+|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 689999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhh
Q 020305 111 LTLLYHYEQVH 121 (328)
Q Consensus 111 ~k~L~~yE~~~ 121 (328)
.+||++||+++
T Consensus 101 ~k~L~~yE~~~ 111 (128)
T 1c20_A 101 MKYLYPYECEK 111 (128)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=4.4e-26 Score=190.42 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=83.5
Q ss_pred CCCcccCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHH
Q 020305 26 SHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (328)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~ 104 (328)
.|++.+++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|+ ++
T Consensus 11 ~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~ 85 (123)
T 1kkx_A 11 HHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQ 85 (123)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HH
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HH
Confidence 467888999999999999999999999 799999999999999999999999999999999999999999996 67
Q ss_pred HHHHHHHHhhHHHHhh
Q 020305 105 VLRKHYLTLLYHYEQV 120 (328)
Q Consensus 105 ~Lk~~Y~k~L~~yE~~ 120 (328)
.|+.+|++||++||+.
T Consensus 86 ~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 86 QLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999993
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.5e-26 Score=188.03 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=88.4
Q ss_pred CCCCcccCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHH
Q 020305 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (328)
Q Consensus 25 ~~~e~~~~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as 103 (328)
-+.|....+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+||..||+|+ +
T Consensus 11 n~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-----~ 85 (116)
T 2li6_A 11 ISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----Y 85 (116)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----T
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----H
Confidence 3456667899999999999999999999 799999999999999999999999999999999999999999997 4
Q ss_pred HHHHHHHHHhhHHHHhhhhhhccC
Q 020305 104 FVLRKHYLTLLYHYEQVHFFKMQG 127 (328)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~~~~~~~ 127 (328)
+.|+.+|.+||++||+ |+.+.++
T Consensus 86 ~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 86 QQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp THHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHH-HHhCccc
Confidence 6899999999999999 5555544
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=193.32 Aligned_cols=89 Identities=37% Similarity=0.614 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHH
Q 020305 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (328)
Q Consensus 33 ~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~ 111 (328)
+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|.+++++++.|+++|+
T Consensus 34 ~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~ 113 (145)
T 2kk0_A 34 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYM 113 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 48999999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhh
Q 020305 112 TLLYHYEQVH 121 (328)
Q Consensus 112 k~L~~yE~~~ 121 (328)
+||++||+..
T Consensus 114 k~L~~yE~~~ 123 (145)
T 2kk0_A 114 KYLYPYECEK 123 (145)
T ss_dssp HHSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999974
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=1.2e-22 Score=163.97 Aligned_cols=89 Identities=26% Similarity=0.515 Sum_probs=82.9
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 237 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 237 k~~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
+++++++||++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhcccccccC
Q 020305 316 ERLKLRQGEG 325 (328)
Q Consensus 316 ~~~k~~~~~~ 325 (328)
..+......+
T Consensus 87 ~~~~~~~~~e 96 (102)
T 2co9_A 87 ASLVSKSYTD 96 (102)
T ss_dssp HHHTSSCCCC
T ss_pred hhcccccccc
Confidence 9888765544
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=155.98 Aligned_cols=77 Identities=34% Similarity=0.607 Sum_probs=73.5
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 239 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 239 ~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~--~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
++.++||++||||+|||+||++++|++|+.+||+ + +.||+++||++|++|+++||++|+++|++++++|.++|.+|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999999999999999999999 5 699999999999999999999999999999999999999994
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=6.7e-22 Score=158.98 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=77.6
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020305 239 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 317 (328)
Q Consensus 239 ~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~ 317 (328)
+++++||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|.++|.+|++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999 999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 020305 318 LKL 320 (328)
Q Consensus 318 ~k~ 320 (328)
...
T Consensus 82 ~P~ 84 (99)
T 1k99_A 82 HPD 84 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 15
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=2.6e-22 Score=160.54 Aligned_cols=84 Identities=40% Similarity=0.666 Sum_probs=79.2
Q ss_pred ccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHH
Q 020305 234 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 310 (328)
Q Consensus 234 ~kkk~~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~--~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e 310 (328)
.+++++++++||++||||+|||+||++++|.+|+.+||+ + +.||+++||++|++|+++||++|+++|++++++|..+
T Consensus 9 ~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 9 GVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp SCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778999999999999999999999999999999 8 9999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 020305 311 LKEYKER 317 (328)
Q Consensus 311 ~~~yk~~ 317 (328)
|.+|+++
T Consensus 89 ~~~y~~~ 95 (97)
T 2lhj_A 89 KAEYAQR 95 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999975
No 16
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=3.7e-22 Score=158.57 Aligned_cols=82 Identities=34% Similarity=0.614 Sum_probs=77.9
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 237 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 237 k~~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
+++++++||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|+++||++|+++|++++++|..+|.+|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 020305 316 ERL 318 (328)
Q Consensus 316 ~~~ 318 (328)
++.
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 764
No 17
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=1.1e-21 Score=149.99 Aligned_cols=75 Identities=28% Similarity=0.547 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020305 242 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 316 (328)
Q Consensus 242 ~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~ 316 (328)
++||++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|++++|++|+++|+.++++|..+|++|++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 99999999999999999999999999999999999999999974
No 18
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=4.6e-21 Score=151.81 Aligned_cols=78 Identities=31% Similarity=0.564 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020305 242 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 319 (328)
Q Consensus 242 ~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k 319 (328)
.+||++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|.++|++|+....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 99999999999999999999999999999999999999999998543
No 19
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=152.05 Aligned_cols=80 Identities=28% Similarity=0.313 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020305 242 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 320 (328)
Q Consensus 242 ~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k~ 320 (328)
..++++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|.++|.+|++++..
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999999999999 999999999999999999999999999999999999999999987655
Q ss_pred c
Q 020305 321 R 321 (328)
Q Consensus 321 ~ 321 (328)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.2e-21 Score=154.68 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=72.2
Q ss_pred ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHH
Q 020305 236 RRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELK 312 (328)
Q Consensus 236 kk~~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~ 312 (328)
++++++++||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|.++|.
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 9999999999999999999999999999999999988764
No 21
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=2e-21 Score=150.87 Aligned_cols=76 Identities=33% Similarity=0.631 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020305 242 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 317 (328)
Q Consensus 242 ~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~--~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~ 317 (328)
++||++||||+|||+||++++|.+|+.+||+ + +.||+++||++|++|+++||++|+++|++++++|.++|.+|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 5 59999999999999999999999999999999999999999754
No 22
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-21 Score=150.02 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 240 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 240 k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
++.+||++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.+++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 467799999999999999999999999999999 9999999999999999999999999999999999999998875
No 23
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.82 E-value=2.1e-20 Score=141.70 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=68.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020305 245 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 317 (328)
Q Consensus 245 p~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~ 317 (328)
.++||||+|||+|||+++|++|+.+||+ ++.||+++||++|++|++ |++|+++|++++++|+++|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 999999999999999998 9999999999999999999999974
No 24
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.82 E-value=6.5e-21 Score=145.34 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=68.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 244 dp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
||++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|.++|++++++|.++|++|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999999999 9999999999999999999999999999999999999999886
No 25
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.81 E-value=3.3e-20 Score=139.48 Aligned_cols=68 Identities=32% Similarity=0.612 Sum_probs=65.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhCCC-Ch--HHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 020305 247 YPKPNRSGYNFFFAEKHYKLKSLYPN-RE--REFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 314 (328)
Q Consensus 247 ~PKrP~Say~lF~~e~r~~vk~~~P~-~~--~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~y 314 (328)
+||||+|||+||++++|++++.+||+ +. .||+++||++|++|++++|++|+++|++++++|.++|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 54 9999999999999999999999999999999999999876
No 26
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.3e-20 Score=141.51 Aligned_cols=71 Identities=25% Similarity=0.572 Sum_probs=68.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020305 245 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 317 (328)
Q Consensus 245 p~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~ 317 (328)
|++||||+|||++|++++|.+|+.+||+ ++.||+++||++|++| ++|++|+++|++++++|.++|.+|+++
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 9999999999999999 889999999999999999999999854
No 27
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=4.8e-20 Score=138.38 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 315 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk 315 (328)
++||||+|||+||++++|++++.+||+ ++.+|+++||++|++|++++|++|+++|++++++|.+++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 479999999999999999999999999 9999999999999999999999999999999999999999986
No 28
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.80 E-value=1.5e-19 Score=156.12 Aligned_cols=77 Identities=29% Similarity=0.558 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020305 240 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 316 (328)
Q Consensus 240 k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~ 316 (328)
++.+||++||||+|||+|||+++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|.++|.+|++
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999999999 99999999999999999999999999999999999999999985
No 29
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.80 E-value=2.3e-20 Score=144.53 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=72.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 243 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 243 kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
.|+++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|.++|++|+.+-
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999997643
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=1.5e-19 Score=147.56 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=73.2
Q ss_pred cCCCCCCCCC-CCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020305 239 SKRRGDPSYP-KPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 316 (328)
Q Consensus 239 ~k~~kdp~~P-KrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~ 316 (328)
.++.+|+++| |||+|||+|||+++|.+|+ + ++.||+++||++|++|+++||++|+++|++++++|+.+|.+|++
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556899999 9999999999999999987 6 88999999999999999999999999999999999999999999
Q ss_pred hcccc
Q 020305 317 RLKLR 321 (328)
Q Consensus 317 ~~k~~ 321 (328)
.+...
T Consensus 84 ~~~~~ 88 (108)
T 1v64_A 84 SLPEE 88 (108)
T ss_dssp HSCHH
T ss_pred hCCHH
Confidence 76543
No 31
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.80 E-value=7.6e-20 Score=142.67 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020305 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 320 (328)
Q Consensus 244 dp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k~ 320 (328)
.|++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|.++|++++++|..+|++|+.+.+.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 37899999999999999999999999999 999999999999999999999999999999999999999999875543
No 32
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=1.1e-19 Score=139.84 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 319 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k 319 (328)
++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+.+.+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999986544
No 33
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=147.09 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 241 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 241 ~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
..+++++||||+|||+||++++|++++.++|+ ++.+|+++||++|+.|+++||++|+++|++++++|+++|++|+-+-
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~P 101 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQP 101 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC--
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCC
Confidence 35689999999999999999999999999999 9999999999999999999999999999999999999999997543
No 34
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.78 E-value=2.2e-19 Score=142.03 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=72.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 320 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k~ 320 (328)
+.||||+|||+||+++.|..++.++|+.+.+|+|+||++|++|+++||++|+++|.+||++|++||.+|+.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999886654
No 35
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.78 E-value=1.3e-19 Score=140.29 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=68.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 244 dp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
.+++||||+||||||++++|..|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|.++|++|+-+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 46789999999999999999999999999 9999999999999999999999999999999999999999997543
No 36
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=133.33 Aligned_cols=66 Identities=36% Similarity=0.628 Sum_probs=63.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 314 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~y 314 (328)
++||||+|||+||++++|.+++.+|| .+|+++||++|++|+++||++|+++|++++++|+++|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998887 6999999999999999999999999999999999999987
No 37
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=155.50 Aligned_cols=78 Identities=28% Similarity=0.563 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020305 240 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 317 (328)
Q Consensus 240 k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~ 317 (328)
++.+||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|+.+|.+|+.+
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455799999999999999999999999999999 999999999999999999999999999999999999999999864
No 38
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=2e-19 Score=137.87 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
++||||+|||+||++++|++|+.+||+ ++.+|+++||++|++|+++||++|+++|++++++|.+++++|+-+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~P 74 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 74 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999997543
No 39
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=3.5e-19 Score=139.12 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=69.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 246 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 246 ~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
.+||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|+.++++|..+|++|+.+-
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 369999999999999999999999999 9999999999999999999999999999999999999999998543
No 40
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=2.4e-19 Score=138.47 Aligned_cols=75 Identities=13% Similarity=0.336 Sum_probs=67.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020305 245 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 319 (328)
Q Consensus 245 p~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k 319 (328)
+++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|+++||++|.++|++++++|.+++++|+-+.+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr 77 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPR 77 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccC
Confidence 4689999999999999999999999999 99999999999999999999999999999999999999999986543
No 41
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=3e-18 Score=138.20 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=69.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 020305 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLRQ 322 (328)
Q Consensus 244 dp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k~~~ 322 (328)
...+||||+|||+|||++++. ..++++ ++.||+++||++|++|+++||++|+++|++++++|+++|.+|++.+...+
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~ 82 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQD 82 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 457899999999999999975 345566 78999999999999999999999999999999999999999999876553
No 42
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=148.38 Aligned_cols=81 Identities=31% Similarity=0.573 Sum_probs=76.2
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHH
Q 020305 237 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKE 313 (328)
Q Consensus 237 k~~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~---~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~ 313 (328)
++++.++||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|+++||++|+++|+.++++|..+|.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677899999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred HHHh
Q 020305 314 YKER 317 (328)
Q Consensus 314 yk~~ 317 (328)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9753
No 43
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=129.62 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=59.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C-hHHHHHHHHHHhccCChHHhHHHHHHHHHHH
Q 020305 243 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R-EREFTKMIGESWTNLSPEERKVYQNIGLKDK 304 (328)
Q Consensus 243 kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~-~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dk 304 (328)
.++++||||+||||||++++|.+|+.+||+ + +.||+++||++|++|+++||++|+++|+.+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999 7 9999999999999999999999999999884
No 44
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.69 E-value=3.7e-18 Score=154.87 Aligned_cols=76 Identities=34% Similarity=0.559 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 240 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 240 k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
+..+||++||||+|||+|||+++|.+|+.++| .+|+++||++|++|++++|++|+++|++++++|+.+|.+|++++
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44679999999999999999999999988877 49999999999999999999999999999999999999999987
No 45
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=151.83 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020305 241 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 319 (328)
Q Consensus 241 ~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k 319 (328)
...||++||||+|||+|||+++|.+|+.+||+ ++.||+++||++|+.|+++||++|+++|+.++++|+++|..|.+.+.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~ 114 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 114 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45689999999999999999999999999999 99999999999999999999999999999999999999999987654
Q ss_pred c
Q 020305 320 L 320 (328)
Q Consensus 320 ~ 320 (328)
.
T Consensus 115 p 115 (238)
T 3tmm_A 115 P 115 (238)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.68 E-value=2e-18 Score=136.40 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=63.0
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHH
Q 020305 239 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 310 (328)
Q Consensus 239 ~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~--~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e 310 (328)
.+.++||++||||+|||||||+++|++|+.+||+ + +.||+ ++|++|+++||++|+++|+++|++|+.+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3445699999999999999999999999999999 7 88888 9999999999999999999999999864
No 47
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=131.33 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHH---HHHhccCChHHhHHHHHHHHHHHHHHHHHH
Q 020305 242 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMI---GESWTNLSPEERKVYQNIGLKDKERYNREL 311 (328)
Q Consensus 242 ~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~l---ge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~ 311 (328)
..++++||||+||||||++++|++|+.+ + ++.||+++| |++|++|+++||++|+++|+++|++|++++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4578999999999999999999999998 7 899999999 999999999999999999999999999876
No 48
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.68 E-value=4e-18 Score=157.00 Aligned_cols=77 Identities=34% Similarity=0.552 Sum_probs=72.2
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020305 239 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 318 (328)
Q Consensus 239 ~k~~kdp~~PKrP~Say~lF~~e~r~~vk~~~P~~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~ 318 (328)
++..+||++||||+|||+|||+++|.+|+.+|| .+|+++||++|++|+++||++|+++|++++++|+++|.+|++++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH---HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344679999999999999999999999988887 48999999999999999999999999999999999999999986
No 49
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=146.95 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=73.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020305 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 320 (328)
Q Consensus 244 dp~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~~~k~ 320 (328)
.|++||||+|||+|||+++|++|+.+||+ ++.||+++||++|+.|+++||++|+++|+.++++|.++|.+|.+.+..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 46789999999999999999999999999 999999999999999999999999999999999999999999876643
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.55 E-value=5.5e-15 Score=127.44 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020305 245 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 316 (328)
Q Consensus 245 p~~PKrP~Say~lF~~e~r~~vk~~~P~-~~~eisk~lge~Wk~Ls~~eK~~Y~e~A~~dkerY~~e~~~yk~ 316 (328)
+++||||++|||+|+.+.|.+|+.+||+ ++.||+++||++|++|+++||++|.++|+.++++|..+|.+|..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999999 99999999999999999999999999999999999999999964
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=76.84 E-value=2.4 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=30.2
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...|. +.|..|+..|+|.. -.+.+++..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNN---RTSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSS---CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCC---CCHHHHHHHHHHHcCC
Confidence 46677777772 37999999998632 2334899999998865
No 52
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=76.17 E-value=2.1 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.8
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...| .+.|..||..|+- - ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG--R---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT--C---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 4566777776 2469999999742 1 234899999999854
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.54 E-value=2.7 Score=30.31 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=28.7
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...| .+.|..||..|+- -...+.+..|.++|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR-----KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT-----CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC-----CCHHHHHHHHHHHcCC
Confidence 4667787777 2479999999862 1234789999988864
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=71.98 E-value=3.2 Score=27.97 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=27.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...|. ..|..||..|.- - ...+.+..|.++|.+
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN--R---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT--C---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 46667777662 479999999742 1 234799999998853
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=70.98 E-value=3.9 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|...|...|- +.|..||..|+-- ...+.+.+|.++|.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~R-----t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCTK-----TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTTS-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCCC-----CHHHHHHHHHHHcc
Confidence 35566777762 4799999999531 23488999998885
No 56
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=68.77 E-value=4.2 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...|- +.|..||..|.- - ...+.+..|.++|.+
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFGQ-------QDWKFLASHFPN--R---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHCSS--S---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhCC-------CCHHHHHHHccC--C---CHHHHHHHHHHHcCC
Confidence 45667777762 479999999742 1 234899999998854
No 57
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=68.75 E-value=5.4 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=28.1
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhh
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLL 114 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L 114 (328)
.|...|...| .+.|..|+..|++..- .+.+++..|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 4667777777 2379999999986422 2347898888876
No 58
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=59.16 E-value=9.8 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=28.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|...|..+|- +.|..|+..+.|..- .+.+++.-|..+|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 56677888772 369999999877533 23478988887764
No 59
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=58.60 E-value=9.3 Score=26.49 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|...|...| .+.|..||..|+... .+.+.+.+|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~R----t~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNAR----TKEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSC----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCC----CHHHHHHHHHHHcc
Confidence 5667788777 247999999997422 23378888888764
No 60
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.80 E-value=9.8 Score=27.58 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=31.2
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~yE~ 119 (328)
.|...|...|.-. +..+.|..||..|+-- ...+.+.+|.+||..-..
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~R-----t~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGNR-----TAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSSS-----CHHHHHHHHHHHHGGGST
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHh
Confidence 4566777777211 1125899999998531 234899999999976443
No 61
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.38 E-value=18 Score=25.42 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=27.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~yE~ 119 (328)
.|...|...| +.|..||...| - ...+.+..|..+|.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g---R---t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG---R---TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS---S---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC---c---CHHHHHHHHHHHhChHhc
Confidence 3445566555 27999999444 1 234899999999987654
No 62
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=49.05 E-value=17 Score=26.17 Aligned_cols=41 Identities=5% Similarity=0.141 Sum_probs=29.3
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~yE~ 119 (328)
.|...|...|- .|..||..|+- - ...+++.+|..||.....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~--R---t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS--R---TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS--S---CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC--C---CHHHHHHHHHHHHHHHHh
Confidence 45566777763 79999998743 2 233899999999877644
No 63
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=46.61 E-value=15 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=27.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...|. +.|..||..|+-- .+.+.+..|.++|.+
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMITR-----NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTTS-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCCC-----CHHHHHHHHHHHHcc
Confidence 56677888774 4799999998521 234778888887753
No 64
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=46.30 E-value=16 Score=27.13 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=25.2
Q ss_pred hhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHh
Q 020305 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113 (328)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~ 113 (328)
..|...|...| +.|..||..++-- ...+.+.+|.++
T Consensus 27 ~~Ll~~v~~~G--------~~W~~IA~~v~~R-----T~~qcr~r~~~~ 62 (79)
T 2yus_A 27 LLLLEALEMYK--------DDWNKVSEHVGSR-----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHSS--------SCHHHHHHHHSSC-----CHHHHHHHHTTS
T ss_pred HHHHHHHHHhC--------CCHHHHHHHcCCC-----CHHHHHHHHHHh
Confidence 35667788887 4799999998731 233678877765
No 65
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=40.68 E-value=19 Score=27.56 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=26.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|...|...|. +.|..||..|.- - .+.+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~~--R---t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLKG--R---IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTSTT--C---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhcC--C---CHHHHHHHHHhccC
Confidence 46677777774 469999998832 1 23478888888774
No 66
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=34.44 E-value=24 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=36.7
Q ss_pred CC-ChHHHHH-HHHHHhccCChHHhHHHHHHHHH-HHHHHHHHHHHHHH
Q 020305 271 PN-REREFTK-MIGESWTNLSPEERKVYQNIGLK-DKERYNRELKEYKE 316 (328)
Q Consensus 271 P~-~~~eisk-~lge~Wk~Ls~~eK~~Y~e~A~~-dkerY~~e~~~yk~ 316 (328)
|- .+..+++ .+|.-|+.+++++|+.|.+..+. ....|-..+.+|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44 5666654 46899999999999999987777 46778898988874
No 67
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=34.13 E-value=41 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=29.1
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~yE~ 119 (328)
.|...|...| +.|..|+..|. .- ...+++..|..++..-..
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~--gR---t~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK--NR---SDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS--SS---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC--CC---CHHHHHHHHHHHHhhHHH
Confidence 5667777777 37999999873 22 233799999988776443
No 68
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=33.04 E-value=35 Score=25.99 Aligned_cols=38 Identities=13% Similarity=0.486 Sum_probs=26.3
Q ss_pred hhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
..|...|...| +.|..|+..| |.- ...+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TTC---CHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CCC---CHHHHHHHHHHHHh
Confidence 35666777777 3799999876 322 23379999987763
No 69
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=32.67 E-value=59 Score=24.21 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCCC---ChHHHHHHHHHHhccCChHHhH
Q 020305 260 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERK 294 (328)
Q Consensus 260 ~e~r~~vk~~~P~---~~~eisk~lge~Wk~Ls~~eK~ 294 (328)
+.+|...+.-||+ ...+..+.|.+.|..|++.++.
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHH
Confidence 4556667788998 3567888999999999876654
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=31.76 E-value=36 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred hhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
-.|-..|...|. +.|..||..|+-- .+.+.+..|.++|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~R-----t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKGR-----IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSSC-----CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcCC-----cHHHHHHHHHHhcc
Confidence 456677877774 4699999998421 23478888888774
No 71
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=30.37 E-value=34 Score=20.03 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=4.6
Q ss_pred CCCCCCCC
Q 020305 244 DPSYPKPN 251 (328)
Q Consensus 244 dp~~PKrP 251 (328)
|..+||+.
T Consensus 17 dddppkkr 24 (28)
T 3ukx_C 17 DDDPPKKR 24 (28)
T ss_dssp SSSCCSCC
T ss_pred CCCchhhh
Confidence 45667654
No 72
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=28.33 E-value=1.2e+02 Score=24.63 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCc-hhh--hhcccchHHHHhhhc------CCCCCCcHH
Q 020305 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGG-YEK--VVAEKKWREVGAVFK------FSPTTTSAS 103 (328)
Q Consensus 33 ~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG-~~~--V~~~~~W~~Va~~lg------~p~~~~~as 103 (328)
..+.|+..|+.++..+|..++. =||-.+|..|.+.-= |-. -..-..|..|++.|. -|...+-..
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~~-------k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP~~~ 78 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVKY-------ADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTA 78 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCH-------HHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCCTHH
T ss_pred HHHHHHHHHHHHHHHCCeeecH-------HHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCCcCChhH
Confidence 4578999999999999998733 478888888874321 110 023458999998883 233334344
Q ss_pred HHHHHHHHHhhHHHH
Q 020305 104 FVLRKHYLTLLYHYE 118 (328)
Q Consensus 104 ~~Lk~~Y~k~L~~yE 118 (328)
+.+=++=..+|.+.+
T Consensus 79 ~~~W~LI~~~Le~~~ 93 (124)
T 2lpy_A 79 FSYWNLIKELIDKKE 93 (124)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHcccc
Confidence 444444444554443
No 73
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.24 E-value=43 Score=25.92 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeeCCeecchhhHHHHHHhcCchhh---hhcccchHHHHhhhc
Q 020305 35 IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEK---VVAEKKWREVGAVFK 94 (328)
Q Consensus 35 ~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~---V~~~~~W~~Va~~lg 94 (328)
..|+..|..++..||..++ .-||..+|..|.+..=.=. -..-..|..|++.|.
T Consensus 9 q~fi~~lk~lLk~RgIkVk-------k~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeeec-------HHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 7899999999999999873 3478888888876421111 122357999998876
No 74
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=26.33 E-value=74 Score=22.38 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHHHHHhhCCC---ChHHHHHHHHHHhccCChHHhH-HHH
Q 020305 260 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERK-VYQ 297 (328)
Q Consensus 260 ~e~r~~vk~~~P~---~~~eisk~lge~Wk~Ls~~eK~-~Y~ 297 (328)
+..|...+.-||+ ...+..+.|.+.|..|++.++. .|.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4456667778998 2357888999999999876654 443
No 75
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.32 E-value=60 Score=23.65 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=25.6
Q ss_pred HHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
|-.+|...|.- ..+.|..||..|+- - ...+++.+|..++.
T Consensus 29 L~~al~~~g~~----~~~rW~~IA~~vpG---R--T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 29 LELALQQYPRG----SSDCWDKIARCVPS---K--SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHSCSS----SHHHHHHHGGGCSS---S--CHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC----CCchHHHHHHHcCC---C--CHHHHHHHHHHHHH
Confidence 44556666621 23589999999852 1 23378888887654
No 76
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.77 E-value=59 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCeeCC
Q 020305 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGG 59 (328)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~~~P~i~g 59 (328)
-.++..+++|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4689999999999999999886666543
No 77
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=30.79 E-value=15 Score=27.73 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=21.6
Q ss_pred chHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHh
Q 020305 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (328)
Q Consensus 85 ~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~yE~ 119 (328)
.|..||..|+- -+ ..+++.+|..+|..+..
T Consensus 37 ~W~~IA~~l~g--Rt---~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVGS--KT---VSQCKNFYFNYKKRQNL 66 (89)
Confidence 59999998752 22 23789999988876543
No 78
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.72 E-value=1.1e+02 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCCC-C-----hHHHHHHHHHHhccCChHHhHH
Q 020305 260 AEKHYKLKSLYPN-R-----EREFTKMIGESWTNLSPEERKV 295 (328)
Q Consensus 260 ~e~r~~vk~~~P~-~-----~~eisk~lge~Wk~Ls~~eK~~ 295 (328)
+.+|...+.-||+ . ..+..+.|.+.|..|++.++..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4556667788898 3 2568889999999999776543
No 79
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.58 E-value=80 Score=22.86 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=26.6
Q ss_pred hhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
-.|=.+|..+++-. .++|..||..||- ....++++|..++..
T Consensus 17 k~fe~al~~~p~~t----~~RW~~IA~~lgR------t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 17 SQLTRSMVKFPGGT----PGRWEKIAHELGR------SVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHHHSCTTC----TTHHHHHHHHHTS------CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCC----CcHHHHHHHHhCC------CHHHHHHHHHHHHHh
Confidence 34445555555321 3689999999861 233788888877544
No 80
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=24.38 E-value=65 Score=25.63 Aligned_cols=38 Identities=8% Similarity=0.301 Sum_probs=27.2
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~~ 116 (328)
.|...|...|+ .|..||..|. .- ...+++..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GR---TDNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TC---CHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CC---CHHHHHHHHHHHHHH
Confidence 46677788884 6999999764 22 233789999888854
No 81
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=23.44 E-value=61 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.485 Sum_probs=25.6
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|...|...| +.|..|+..| |.- ...+++..|..+|.
T Consensus 89 ~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 89 IIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAVKNHWNSTMR 125 (128)
T ss_dssp HHHHHHHHHC--------SCHHHHGGGS--TTC---CHHHHHHHHHTTTT
T ss_pred HHHHHHHHHC--------cCHHHHHHHC--CCC---CHHHHHHHHHHHHh
Confidence 4666677776 4799999976 322 23379999987763
No 82
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=22.97 E-value=40 Score=25.04 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHHhhc
Q 020305 32 KDPIVFWDTLRRFHFIM 48 (328)
Q Consensus 32 ~~~~~F~~~L~~F~~~~ 48 (328)
=+-+.||++|+.|+++|
T Consensus 37 l~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 37 VATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh
Confidence 47789999999999987
No 83
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=22.62 E-value=1.4e+02 Score=20.98 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCCC-C----hHHHHHHHHHHhccCChHHhH
Q 020305 260 AEKHYKLKSLYPN-R----EREFTKMIGESWTNLSPEERK 294 (328)
Q Consensus 260 ~e~r~~vk~~~P~-~----~~eisk~lge~Wk~Ls~~eK~ 294 (328)
+..|...+.-||+ . ..+..+.|.+.|..|++.++.
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 4455567778888 2 357888999999999877653
No 84
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=21.40 E-value=69 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred hhHHHHHHhcCchhhhhcccchHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 020305 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
-.|-..|...|. .|..||..|+-- .+.+.+..|.++|.
T Consensus 20 ~~L~~~v~~~G~--------~W~~Ia~~~~~R-----t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 20 EMLKRAVAQHGS--------DWKMIAATFPNR-----NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHTCTTC-----CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCC--------CHHHHHHHcCCC-----CHHHHHHHHhhhcc
Confidence 346677777763 599999987421 23378888888874
No 85
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=21.03 E-value=1e+02 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.1
Q ss_pred hHHHHHHhcCchhhhhcccchHHHHhhhc--CCCCCCcHHHHHHHHHHHhhH
Q 020305 66 VLYVEATTRGGYEKVVAEKKWREVGAVFK--FSPTTTSASFVLRKHYLTLLY 115 (328)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg--~p~~~~~as~~Lk~~Y~k~L~ 115 (328)
.|-..|..+|. ..|..|+.... |+.- ....||..|..+|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~R---T~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADHR---TYVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCCC---CHHHHHHHHHHHHH
Confidence 45566777773 48999999743 4432 23379999988775
Done!