Query 020306
Match_columns 328
No_of_seqs 207 out of 1844
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02541 uracil phosphoribosyl 100.0 1.7E-63 3.7E-68 464.7 26.4 236 93-328 6-243 (244)
2 COG0035 Upp Uracil phosphoribo 100.0 6.6E-63 1.4E-67 448.5 21.9 208 117-328 2-209 (210)
3 PF14681 UPRTase: Uracil phosp 100.0 3.9E-60 8.6E-65 432.1 20.7 207 121-328 1-207 (207)
4 TIGR01091 upp uracil phosphori 100.0 3.8E-55 8.2E-60 399.4 25.0 205 119-328 2-206 (207)
5 PRK00129 upp uracil phosphorib 100.0 2E-54 4.4E-59 394.9 24.9 208 116-328 1-208 (209)
6 KOG1017 Predicted uracil phosp 100.0 5.6E-36 1.2E-40 269.4 14.0 201 116-328 66-266 (267)
7 KOG4203 Armadillo/beta-Catenin 100.0 3.8E-31 8.3E-36 267.4 6.5 208 117-328 265-472 (473)
8 PLN02369 ribose-phosphate pyro 99.6 1.2E-14 2.6E-19 140.1 16.3 176 115-327 110-293 (302)
9 KOG1712 Adenine phosphoribosyl 99.5 1.1E-14 2.4E-19 128.0 5.6 149 126-302 27-178 (183)
10 PRK03092 ribose-phosphate pyro 99.5 5.6E-13 1.2E-17 128.7 16.2 177 115-327 108-292 (304)
11 COG0462 PrsA Phosphoribosylpyr 99.4 1.4E-12 3E-17 125.9 13.2 173 115-327 123-305 (314)
12 TIGR01203 HGPRTase hypoxanthin 99.4 8.9E-12 1.9E-16 110.4 14.2 119 141-287 5-127 (166)
13 PRK02812 ribose-phosphate pyro 99.3 2.3E-11 5E-16 118.8 14.2 174 115-327 140-321 (330)
14 PRK01259 ribose-phosphate pyro 99.3 2.6E-11 5.6E-16 117.4 13.8 173 115-327 119-300 (309)
15 PRK04923 ribose-phosphate pyro 99.3 1.3E-10 2.8E-15 113.1 15.2 175 115-327 126-309 (319)
16 PRK05205 bifunctional pyrimidi 99.2 7.3E-11 1.6E-15 105.2 12.0 118 139-282 7-134 (176)
17 PRK02458 ribose-phosphate pyro 99.2 2.1E-10 4.5E-15 111.9 14.5 174 115-327 128-308 (323)
18 PRK02269 ribose-phosphate pyro 99.2 2.9E-10 6.3E-15 110.7 14.6 177 115-327 124-308 (320)
19 TIGR01251 ribP_PPkin ribose-ph 99.2 5.6E-10 1.2E-14 107.9 16.0 173 115-326 120-298 (308)
20 PRK06827 phosphoribosylpyropho 99.2 5E-10 1.1E-14 111.4 15.8 182 115-327 161-359 (382)
21 PRK07199 phosphoribosylpyropho 99.1 1.6E-09 3.5E-14 104.7 15.7 171 116-327 120-295 (301)
22 PRK00934 ribose-phosphate pyro 99.1 1.7E-09 3.7E-14 103.6 13.9 166 115-322 116-283 (285)
23 PRK00553 ribose-phosphate pyro 99.1 2.9E-09 6.2E-14 104.3 15.4 174 115-327 128-313 (332)
24 COG2065 PyrR Pyrimidine operon 99.0 2.1E-09 4.5E-14 95.2 11.1 117 140-282 8-135 (179)
25 PTZ00145 phosphoribosylpyropho 99.0 7.5E-09 1.6E-13 104.5 15.2 176 115-327 238-427 (439)
26 PRK15423 hypoxanthine phosphor 99.0 1.4E-08 3.1E-13 91.2 14.3 122 139-287 9-135 (178)
27 PTZ00271 hypoxanthine-guanine 99.0 1.8E-08 3.9E-13 93.0 14.9 126 139-287 28-161 (211)
28 PRK09162 hypoxanthine-guanine 98.9 3.2E-08 6.8E-13 88.9 14.4 121 136-284 14-137 (181)
29 PLN02238 hypoxanthine phosphor 98.9 3.6E-08 7.7E-13 89.3 14.4 120 140-287 13-140 (189)
30 PF00156 Pribosyltran: Phospho 98.9 8.4E-09 1.8E-13 85.0 9.3 86 191-280 31-124 (125)
31 PTZ00149 hypoxanthine phosphor 98.9 2.2E-08 4.8E-13 94.1 13.0 121 138-287 57-193 (241)
32 PF14572 Pribosyl_synth: Phosp 98.9 8.7E-10 1.9E-14 99.6 2.2 88 235-326 77-174 (184)
33 COG0634 Hpt Hypoxanthine-guani 98.8 1.5E-07 3.1E-12 84.5 13.8 121 140-288 13-137 (178)
34 TIGR01090 apt adenine phosphor 98.8 6.2E-08 1.3E-12 85.8 11.0 108 190-303 49-167 (169)
35 PLN02293 adenine phosphoribosy 98.7 7.5E-07 1.6E-11 80.7 15.5 56 237-292 120-175 (187)
36 PLN02297 ribose-phosphate pyro 98.6 4.5E-07 9.8E-12 88.7 13.5 70 235-307 224-301 (326)
37 TIGR00336 pyrE orotate phospho 98.6 3.9E-07 8.5E-12 81.1 11.8 109 190-302 57-167 (173)
38 KOG1448 Ribose-phosphate pyrop 98.5 2.5E-07 5.5E-12 88.8 8.7 174 116-327 123-305 (316)
39 PRK06031 phosphoribosyltransfe 98.5 3.5E-06 7.7E-11 78.9 15.8 104 190-295 87-206 (233)
40 PRK02277 orotate phosphoribosy 98.5 7.9E-07 1.7E-11 81.1 10.7 96 190-290 88-185 (200)
41 PRK02304 adenine phosphoribosy 98.4 1.8E-06 3.9E-11 76.7 11.0 95 190-291 54-163 (175)
42 COG0503 Apt Adenine/guanine ph 98.4 7.5E-07 1.6E-11 80.1 8.6 56 238-293 112-167 (179)
43 PRK13812 orotate phosphoribosy 98.4 2.3E-06 5.1E-11 76.7 11.4 102 190-302 61-164 (176)
44 PRK00455 pyrE orotate phosphor 98.4 4E-06 8.7E-11 76.3 12.2 102 190-301 67-169 (202)
45 PRK08558 adenine phosphoribosy 98.4 4.5E-06 9.8E-11 78.3 12.2 106 190-301 114-233 (238)
46 PRK09219 xanthine phosphoribos 98.4 9.7E-07 2.1E-11 80.2 7.3 64 238-303 113-176 (189)
47 TIGR01744 XPRTase xanthine pho 98.4 8.9E-07 1.9E-11 80.5 6.9 63 239-303 114-176 (191)
48 PRK13811 orotate phosphoribosy 98.4 3.9E-06 8.4E-11 74.8 10.9 100 191-302 60-161 (170)
49 COG1926 Predicted phosphoribos 98.3 1.4E-06 3.1E-11 80.2 8.0 66 237-307 120-185 (220)
50 PRK12560 adenine phosphoribosy 98.3 4.3E-06 9.3E-11 75.7 11.1 61 239-300 111-171 (187)
51 PRK13810 orotate phosphoribosy 98.3 5E-06 1.1E-10 75.4 11.0 62 238-302 118-179 (187)
52 TIGR01367 pyrE_Therm orotate p 98.3 3.1E-06 6.6E-11 76.6 9.5 88 190-287 61-148 (187)
53 PRK13809 orotate phosphoribosy 98.3 7.8E-06 1.7E-10 75.2 10.7 102 191-302 71-175 (206)
54 COG2236 Predicted phosphoribos 98.2 6.5E-06 1.4E-10 75.1 9.6 78 190-269 32-114 (192)
55 PRK07322 adenine phosphoribosy 98.2 6.8E-06 1.5E-10 73.6 9.3 45 238-285 117-161 (178)
56 PRK09177 xanthine-guanine phos 98.2 7.4E-06 1.6E-10 72.1 9.1 87 189-286 33-121 (156)
57 TIGR01743 purR_Bsub pur operon 98.0 1.3E-05 2.8E-10 76.6 6.7 52 238-291 190-241 (268)
58 PRK09213 pur operon repressor; 97.9 1.6E-05 3.5E-10 76.1 5.9 52 238-291 192-243 (271)
59 PRK05500 bifunctional orotidin 97.9 9.7E-05 2.1E-09 75.9 11.2 102 191-302 348-450 (477)
60 TIGR00201 comF comF family pro 97.9 2.3E-05 5E-10 70.5 5.6 40 238-280 149-188 (190)
61 PRK05793 amidophosphoribosyltr 97.8 6.8E-05 1.5E-09 76.8 9.4 45 233-280 345-389 (469)
62 COG0461 PyrE Orotate phosphori 97.8 5.8E-05 1.3E-09 69.4 7.2 57 241-300 111-167 (201)
63 PRK08525 amidophosphoribosyltr 97.7 9.4E-05 2E-09 75.3 8.6 63 236-302 335-399 (445)
64 COG0856 Orotate phosphoribosyl 97.7 0.00011 2.3E-09 66.3 7.4 98 190-291 89-187 (203)
65 PLN02440 amidophosphoribosyltr 97.7 0.00016 3.4E-09 74.4 8.9 87 190-280 278-376 (479)
66 KOG3367 Hypoxanthine-guanine p 97.7 0.0002 4.2E-09 64.6 8.2 95 187-284 60-165 (216)
67 PRK11595 DNA utilization prote 97.7 8.4E-05 1.8E-09 68.9 6.2 41 237-280 183-223 (227)
68 COG1040 ComFC Predicted amidop 97.6 0.0001 2.2E-09 68.7 6.2 46 235-282 177-222 (225)
69 PRK09123 amidophosphoribosyltr 97.6 0.00025 5.5E-09 72.9 9.6 86 190-279 298-395 (479)
70 PRK08341 amidophosphoribosyltr 97.5 0.0003 6.4E-09 71.7 8.4 42 235-279 328-369 (442)
71 PRK09246 amidophosphoribosyltr 97.5 0.00029 6.3E-09 72.8 8.0 42 236-280 353-394 (501)
72 PRK07349 amidophosphoribosyltr 97.4 0.00019 4.2E-09 74.1 5.0 36 236-272 372-407 (500)
73 PRK06388 amidophosphoribosyltr 97.1 0.00034 7.3E-09 71.9 3.8 38 236-274 351-388 (474)
74 PRK07847 amidophosphoribosyltr 97.1 0.00051 1.1E-08 71.2 4.1 36 236-272 362-397 (510)
75 PRK06781 amidophosphoribosyltr 97.0 0.00018 3.8E-09 73.9 0.7 36 236-272 343-378 (471)
76 PRK07272 amidophosphoribosyltr 97.0 0.0012 2.6E-08 68.0 6.1 42 236-280 345-386 (484)
77 TIGR01134 purF amidophosphorib 96.8 0.0013 2.9E-08 66.9 4.9 40 237-279 334-373 (442)
78 PRK07631 amidophosphoribosyltr 96.8 0.0013 2.9E-08 67.6 4.8 36 236-272 343-378 (475)
79 PF15609 PRTase_2: Phosphoribo 96.5 0.013 2.7E-07 53.7 8.1 63 238-302 117-184 (191)
80 COG0034 PurF Glutamine phospho 96.3 0.0025 5.5E-08 64.8 2.8 115 143-276 264-382 (470)
81 KOG1503 Phosphoribosylpyrophos 96.0 0.0095 2.1E-07 56.5 4.7 180 121-327 132-339 (354)
82 KOG0572 Glutamine phosphoribos 95.7 0.006 1.3E-07 61.1 2.4 80 196-279 312-393 (474)
83 PF15610 PRTase_3: PRTase ComF 75.8 4.8 0.0001 39.0 5.0 37 241-278 137-173 (274)
84 PF01488 Shikimate_DH: Shikima 57.2 45 0.00098 28.1 6.9 58 238-304 9-66 (135)
85 smart00450 RHOD Rhodanese Homo 54.7 39 0.00085 25.1 5.5 47 239-295 53-99 (100)
86 PLN02469 hydroxyacylglutathion 51.4 26 0.00056 33.2 4.9 57 242-305 22-81 (258)
87 PF01555 N6_N4_Mtase: DNA meth 49.9 11 0.00024 33.2 2.0 21 244-264 192-212 (231)
88 PF13793 Pribosyltran_N: N-ter 48.8 1.6E+02 0.0034 24.6 9.7 78 195-280 6-87 (116)
89 PRK02812 ribose-phosphate pyro 48.6 1.5E+02 0.0033 29.3 9.9 86 186-280 19-108 (330)
90 PF09960 DUF2194: Uncharacteri 40.3 72 0.0016 34.2 6.6 51 256-307 377-430 (585)
91 KOG2299 Ribonuclease HI [Repli 39.9 64 0.0014 31.3 5.5 48 256-303 123-170 (301)
92 COG0120 RpiA Ribose 5-phosphat 38.3 94 0.002 29.5 6.3 68 252-324 26-104 (227)
93 PF02875 Mur_ligase_C: Mur lig 38.1 1E+02 0.0022 23.7 5.7 62 244-306 13-82 (91)
94 PRK02269 ribose-phosphate pyro 35.4 3.4E+02 0.0074 26.6 10.0 83 189-280 6-92 (320)
95 PF00919 UPF0004: Uncharacteri 34.6 1E+02 0.0022 25.0 5.2 60 242-302 36-98 (98)
96 PRK04923 ribose-phosphate pyro 34.4 2.5E+02 0.0055 27.6 8.9 84 188-280 6-93 (319)
97 PRK00553 ribose-phosphate pyro 33.1 3.4E+02 0.0074 26.8 9.6 85 187-280 8-96 (332)
98 COG3933 Transcriptional antite 33.1 1.2E+02 0.0025 31.7 6.4 68 240-311 238-311 (470)
99 PTZ00145 phosphoribosylpyropho 32.8 3.2E+02 0.007 28.4 9.6 85 187-280 118-206 (439)
100 PRK11524 putative methyltransf 32.5 30 0.00064 33.0 2.1 22 243-264 208-229 (284)
101 COG4565 CitB Response regulato 30.3 1E+02 0.0022 29.2 5.0 53 252-306 29-86 (224)
102 PF10662 PduV-EutP: Ethanolami 30.0 91 0.002 27.3 4.5 41 250-293 100-140 (143)
103 PRK10241 hydroxyacylglutathion 29.8 1.7E+02 0.0036 27.4 6.6 55 242-303 21-78 (251)
104 PLN02962 hydroxyacylglutathion 29.1 1.7E+02 0.0037 27.6 6.6 58 242-304 35-95 (251)
105 TIGR01251 ribP_PPkin ribose-ph 28.6 4.6E+02 0.0099 25.4 9.6 78 195-280 6-88 (308)
106 PRK02458 ribose-phosphate pyro 28.2 5.3E+02 0.011 25.4 10.0 85 187-280 8-96 (323)
107 PRK00934 ribose-phosphate pyro 27.8 3.4E+02 0.0073 26.0 8.5 78 195-280 5-85 (285)
108 PRK07199 phosphoribosylpyropho 27.5 5.3E+02 0.012 25.0 9.8 78 195-280 8-88 (301)
109 PRK13699 putative methylase; P 25.8 46 0.001 30.9 2.0 19 246-264 166-184 (227)
110 cd00158 RHOD Rhodanese Homolog 25.7 1.5E+02 0.0031 21.7 4.5 32 241-277 49-80 (89)
111 PRK05718 keto-hydroxyglutarate 23.7 1.5E+02 0.0032 27.5 4.9 49 254-306 25-76 (212)
112 COG0784 CheY FOG: CheY-like re 23.1 3.6E+02 0.0079 20.9 7.0 48 242-297 5-54 (130)
113 cd01529 4RHOD_Repeats Member o 22.8 1.6E+02 0.0035 22.6 4.4 32 241-277 55-86 (96)
114 PRK01259 ribose-phosphate pyro 22.8 6.3E+02 0.014 24.6 9.4 78 195-280 6-87 (309)
115 cd01444 GlpE_ST GlpE sulfurtra 22.7 1.3E+02 0.0028 22.8 3.8 28 241-271 55-82 (96)
116 TIGR01302 IMP_dehydrog inosine 22.7 1.6E+02 0.0034 30.2 5.4 60 244-306 211-275 (450)
117 cd00606 fungal_RNase fungal ty 22.5 45 0.00097 27.7 1.1 18 4-21 51-69 (100)
118 PLN02297 ribose-phosphate pyro 22.4 7.7E+02 0.017 24.4 11.4 87 187-280 15-104 (326)
119 PF11072 DUF2859: Protein of u 22.3 1.6E+02 0.0034 26.0 4.5 57 244-305 64-121 (142)
120 COG0462 PrsA Phosphoribosylpyr 21.7 3.6E+02 0.0078 26.8 7.4 78 195-280 10-91 (314)
121 PF11181 YflT: Heat induced st 21.6 1.4E+02 0.0029 24.2 3.8 39 253-293 7-45 (103)
122 COG3958 Transketolase, C-termi 21.5 1.2E+02 0.0026 30.0 4.0 70 242-324 192-265 (312)
123 PLN02160 thiosulfate sulfurtra 21.2 2.5E+02 0.0054 23.7 5.5 50 242-303 81-130 (136)
124 PRK06827 phosphoribosylpyropho 21.1 7.3E+02 0.016 25.2 9.6 84 188-280 8-130 (382)
125 cd06353 PBP1_BmpA_Med_like Per 20.5 3.5E+02 0.0076 25.1 6.9 55 243-301 32-86 (258)
126 cd01453 vWA_transcription_fact 20.4 2.8E+02 0.006 24.6 5.9 49 243-294 109-158 (183)
127 PRK05319 rplD 50S ribosomal pr 20.3 2.4E+02 0.0051 26.0 5.5 58 242-302 119-176 (205)
No 1
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=1.7e-63 Score=464.73 Aligned_cols=236 Identities=73% Similarity=1.185 Sum_probs=217.7
Q ss_pred CCcccceecc--ccccccccCCCCCceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCccee
Q 020306 93 TPRRSYVTVR--SHMATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGE 170 (328)
Q Consensus 93 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~ 170 (328)
+||+++-+.- .+.++|.+|....+|.+++++||++++++|+|||++|+..+||++++||+++|+|||+++|+|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~ 85 (244)
T PLN02541 6 SSRLTRTVRASADAAASEPSPKAPQQMLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGE 85 (244)
T ss_pred CCcceeeecccccccccCCCCcccccceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceE
Confidence 4565554433 56677777766667889999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcC
Q 020306 171 IQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDP 250 (328)
Q Consensus 171 V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd 250 (328)
|+||.|.+....+....++|+|+|||+|++|++++++++|++++|+++++||+.+.++++||.|||.++.++++|+|+||
T Consensus 86 V~TP~g~~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDp 165 (244)
T PLN02541 86 VQTPMGVADVEFIDPREPVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDP 165 (244)
T ss_pred EECCCCeEEEEeecCCCcEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECc
Confidence 99999976656555334599999999999999999999999999999999999999999999999999975689999999
Q ss_pred cccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 251 MLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 251 ~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
|||||+|+.+|+++|+++|+++++|++++++++++|++++.++||+++|||++||++|||+|||+|||||||||||||
T Consensus 166 mLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt 243 (244)
T PLN02541 166 MLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243 (244)
T ss_pred chhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCC
Confidence 999999999999999999999899999999999999999999999999999999999999999999999999999997
No 2
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-63 Score=448.49 Aligned_cols=208 Identities=48% Similarity=0.817 Sum_probs=199.3
Q ss_pred eEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcC
Q 020306 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILR 196 (328)
Q Consensus 117 ~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILR 196 (328)
+.+++.+||++++++|+|||++|+..+||++++|++++|+|||+++ +|+++.+|+||.+...+..+. ++++|+|||||
T Consensus 2 ~~v~vi~hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~-l~~e~~~ieTP~~~~~~~~~~-~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRD-LPLEKVEIETPLGPTEGVQIA-GKKIVIVPILR 79 (210)
T ss_pred CceEEeCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCc-CceeEEEEECCCcceeeeeec-CCcEEEEEEee
Confidence 6788999999999999999999999999999999999999999998 999999999999965555554 35599999999
Q ss_pred cChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEE
Q 020306 197 AGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIK 276 (328)
Q Consensus 197 aGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~ 276 (328)
||++|++++.+++|++++|+|++|||++|.+++.||.|||++++ ++.|+|+|||||||+|+++|++.|+++| .+++|+
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~-~~~viv~DPMLATG~s~i~ai~~L~~~G-~~~~I~ 157 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDID-ERTVIVLDPMLATGGSAIAAIDLLKKRG-GPKNIK 157 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCccc-CCeEEEECchhhccHhHHHHHHHHHHhC-CCceEE
Confidence 99999999999999999999999999999999999999999998 7999999999999999999999999998 779999
Q ss_pred EEEEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 277 VISAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 277 vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
+++++++++|++++.++||+++|||++||++|||+|||+|||||||||+|||
T Consensus 158 ~v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt 209 (210)
T COG0035 158 VVSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGT 209 (210)
T ss_pred EEEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCC
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=3.9e-60 Score=432.12 Aligned_cols=207 Identities=45% Similarity=0.847 Sum_probs=189.9
Q ss_pred eCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChH
Q 020306 121 VPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLV 200 (328)
Q Consensus 121 v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~ 200 (328)
|++||++++++|+|||++|+..+||++++|++++|+|||+++|+|+++.+|+||.|....+.+...+++|+|+|||+|++
T Consensus 1 V~~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~ 80 (207)
T PF14681_consen 1 VPQHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLP 80 (207)
T ss_dssp EEB-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHH
T ss_pred CCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHH
Confidence 56899999999999999999999999999999999999999889999999999999877666654448999999999999
Q ss_pred HHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 201 LVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 201 m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
|++++++++|++++|+|+++||+.+.++++||.+||.+++ +++|||+|||+|||+|+++|++.|+++|+.+++|+++++
T Consensus 81 m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~-~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 81 MLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIE-NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV 159 (207)
T ss_dssp HHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGT-TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCcc-CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE
Confidence 9999999999999999999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred eeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 281 VAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 281 vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
+++++|++++.++||+++|||++||++||++|||+||+||||||||||
T Consensus 160 ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 160 IASPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp EEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred EecHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 999999999999999999999999999999999999999999999998
No 4
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=3.8e-55 Score=399.35 Aligned_cols=205 Identities=47% Similarity=0.791 Sum_probs=195.1
Q ss_pred EEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcC
Q 020306 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAG 198 (328)
Q Consensus 119 v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaG 198 (328)
+++++|||+++++|+|||++|++.+||++++||+++|+|||+++ +|+++.+|+||.|.+.+..+. .+++|+|+|||+|
T Consensus 2 v~~~~~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~-l~~~~~~v~tp~g~~~~~~~~-~~~i~~V~ILrgg 79 (207)
T TIGR01091 2 VVVIEHPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRD-LELEEVEVETPLGETEGGRIL-GKKIVLVPILRAG 79 (207)
T ss_pred eEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCceeEEEECCCCcEEEeEec-CCcEEEEEEeCCc
Confidence 56778999999999999999999999999999999999999995 999999999999987666665 3569999999999
Q ss_pred hHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEE
Q 020306 199 LVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278 (328)
Q Consensus 199 l~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv 278 (328)
++|++++++.+|.+++|++.++|++.+.++..+|.++|.+++ +++|||+|||+|||+|+.+|++.|+++|++ +|.++
T Consensus 80 ~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~-~~~VllvDd~laTG~Tl~~ai~~L~~~G~~--~I~v~ 156 (207)
T TIGR01091 80 LGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDID-ERTVIVLDPMLATGGTMIAALDLLKKRGAK--KIKVL 156 (207)
T ss_pred HHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCC-CCEEEEECCCccchHHHHHHHHHHHHcCCC--EEEEE
Confidence 999999999999999999999999888889999999999998 899999999999999999999999999984 79999
Q ss_pred EEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 279 SAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 279 ~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
+++++++|++++.++||+++|||++||++|||+|||+||+||||||||||
T Consensus 157 ~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt 206 (207)
T TIGR01091 157 SIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGT 206 (207)
T ss_pred EEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999997
No 5
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=2e-54 Score=394.87 Aligned_cols=208 Identities=48% Similarity=0.808 Sum_probs=196.2
Q ss_pred ceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEc
Q 020306 116 RMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPIL 195 (328)
Q Consensus 116 ~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsIL 195 (328)
+|.+++.+||++++++|+|||++|+..+||++++||+++|+|||+++ +|+++.+|+||.|.+.+..+. ++++|+|+|+
T Consensus 1 ~~~v~~~~~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~-l~~~~~~v~tp~g~~~g~~~~-~~~~vvV~Il 78 (209)
T PRK00129 1 MMKVHVVDHPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRD-LPLEEVEIETPLGKTTGKRIA-GKKLVIVPIL 78 (209)
T ss_pred CCceEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcc-cceeEEEEECCCCcEEEEEec-CCeEEEEEEe
Confidence 35688999999999999999999999999999999999999999997 999999999999965454544 3569999999
Q ss_pred CcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccE
Q 020306 196 RAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQI 275 (328)
Q Consensus 196 RaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I 275 (328)
|+|++|++++.+.+|.+++|++.++|++.+.++..+|.++|.+++ +++|||+|||++||+|+.+|++.|+++|+ ++|
T Consensus 79 rgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~-~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I 155 (209)
T PRK00129 79 RAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDID-ERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNI 155 (209)
T ss_pred CCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCC-CCEEEEECCcccchHHHHHHHHHHHHcCC--CEE
Confidence 999999999999999999999999999888888899999999997 89999999999999999999999999996 689
Q ss_pred EEEEEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 276 KVISAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 276 ~vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
.+++++++++|++++.++||+++|||++||++||++|||+||+||||||||||
T Consensus 156 ~~~~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt 208 (209)
T PRK00129 156 KVLCLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGT 208 (209)
T ss_pred EEEEEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999997
No 6
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=100.00 E-value=5.6e-36 Score=269.45 Aligned_cols=201 Identities=22% Similarity=0.365 Sum_probs=186.5
Q ss_pred ceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEc
Q 020306 116 RMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPIL 195 (328)
Q Consensus 116 ~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsIL 195 (328)
.++.++.-+.|+..++|++||++|+..+|.++.|||.|+++||.+.. ||+.+++|+||.|..+.+.-. .+.-|+|+|+
T Consensus 66 ~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNq-LPytec~VtTPTG~kYEGikf-~~GNCGVSi~ 143 (267)
T KOG1017|consen 66 SNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQ-LPYTECTVTTPTGFKYEGIKF-NRGNCGVSIC 143 (267)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhc-CCccceeeecCCcceeeceee-cCCCcceEEE
Confidence 35556667889999999999999999999999999999999999986 999999999999987755332 3557999999
Q ss_pred CcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccE
Q 020306 196 RAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQI 275 (328)
Q Consensus 196 RaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I 275 (328)
|+|.+|++++|+.+..+++|+|+++.|+.|.+++++|.++|+||. .++|+|+.|++.||.|++.|+++|+|+|+++++|
T Consensus 144 RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~-sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~I 222 (267)
T KOG1017|consen 144 RSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDIT-SRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNI 222 (267)
T ss_pred echHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCccc-ceeEEEEeeeecCCccHHHHHHHHHHcCCCcccE
Confidence 999999999999999999999999999999999999999999998 6999999999999999999999999999999999
Q ss_pred EEEEEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 276 KVISAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 276 ~vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
++++++++|-|.+.+.++||.++|+|..|.+.... .||..||||
T Consensus 223 iL~sLF~tP~gak~i~~~fP~itiltseihpvaPn---------HFgqkYFGt 266 (267)
T KOG1017|consen 223 ILVSLFITPTGAKNITRKFPYITILTSEIHPVAPN---------HFGQKYFGT 266 (267)
T ss_pred EEEEeeecchhhHHHHHhCCeEEEEeecceecCcc---------cccchhcCC
Confidence 99999999999999999999999999988887655 789999997
No 7
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=3.8e-31 Score=267.42 Aligned_cols=208 Identities=29% Similarity=0.462 Sum_probs=195.3
Q ss_pred eEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcC
Q 020306 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILR 196 (328)
Q Consensus 117 ~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILR 196 (328)
+...++++++++++++.+||+.|...+|.++.+++++++.++++. ++|+.+..+.||.|..+.+.... .++|+|+|+|
T Consensus 265 ~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~-~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r 342 (473)
T KOG4203|consen 265 NVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLG-HLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPR 342 (473)
T ss_pred cceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccC-cccceeeeEecccccchhccccc-chhccCCCCc
Confidence 445888999999999999999999999999999999988888775 59999999999998766554443 6799999999
Q ss_pred cChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEE
Q 020306 197 AGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIK 276 (328)
Q Consensus 197 aGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~ 276 (328)
+|..|+..++..+++.++|+|..+|++.+.++.++|.++|.++.. . |+++||+++||+++.+|++.|.++|+.+++|.
T Consensus 343 ~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~-~-V~ll~p~~~tg~~~~~a~~~ll~~gv~~~~i~ 420 (473)
T KOG4203|consen 343 SGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISD-R-VLLLDPVLATGNSAMMAIILLLDHGVPEENII 420 (473)
T ss_pred chhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCcccccc-c-eeeecchhhcchhHHHHHHHHHhCCCcHHHhH
Confidence 999999999999999999999999999999999999999999983 4 99999999999999999999999999999999
Q ss_pred EEEEeeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhCC
Q 020306 277 VISAVAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328 (328)
Q Consensus 277 vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fGt 328 (328)
+++++++++|+.++...||.+++|+.++|+.+|+++|++||+|||||||||+
T Consensus 421 ~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~ 472 (473)
T KOG4203|consen 421 FLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGT 472 (473)
T ss_pred HHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCC
Confidence 9999999999999999999999999999999999999999999999999996
No 8
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.62 E-value=1.2e-14 Score=140.11 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=140.6
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|++++++++.+.-+.....+.|..++.+. . +. .+++++|++
T Consensus 110 d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~----------~--------------------~~-~~~~vvVsp 158 (302)
T PLN02369 110 DRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK----------T--------------------IS-SPDLVVVSP 158 (302)
T ss_pred CEEEEEECCchHHhhccCCceecccchHHHHHHHHHh----------C--------------------CC-CCceEEEEE
Confidence 4567778899999999988777777777776665330 0 10 134789999
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
.++|..+++++.+.+++++.+.+..+|+..... . ..+++++++ |++|+|+|||++||+|+.+|++.|++.|+ ++
T Consensus 159 d~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~--~-~~~~~~~v~-g~~viivDDii~TG~Tl~~a~~~l~~~Ga--~~ 232 (302)
T PLN02369 159 DVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA--E-VMNLIGDVK-GKVAIMVDDMIDTAGTITKGAALLHQEGA--RE 232 (302)
T ss_pred CcChHHHHHHHHHHcCCCCEEEEEEecCCccee--e-eEecCCCCC-CCEEEEEcCcccchHHHHHHHHHHHhCCC--CE
Confidence 999999999999989889999999998754422 1 236788897 89999999999999999999999999998 47
Q ss_pred EEEEE--EeeChhHHHHHHHhCCCcEEEEeEeCCCCCC------CCccccCcccHhHhhhC
Q 020306 275 IKVIS--AVAAPPALQKLSENFHGLHVYTGIIDPTVND------KGFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~--~vas~~Gi~~L~~~fP~v~IvtaaID~~Lde------~gyIvPGLGDaGDR~fG 327 (328)
|.+++ .+++++|++++.+...+.-++|.+++..... .-.+.|-|+++..|++.
T Consensus 233 v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~~~~~~~~~~~~~~~v~~~la~~i~~~~~ 293 (302)
T PLN02369 233 VYACATHAVFSPPAIERLSSGLFQEVIVTNTIPVSEKNYFPQLTVLSVANLLGETIWRVHD 293 (302)
T ss_pred EEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHhc
Confidence 88888 5999999999998777889999998654221 23778888998888764
No 9
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=99.52 E-value=1.1e-14 Score=128.01 Aligned_cols=149 Identities=23% Similarity=0.340 Sum_probs=120.4
Q ss_pred hHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHH
Q 020306 126 LIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHA 205 (328)
Q Consensus 126 ~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~l 205 (328)
+++++++++.| +..|+..++-+...+-+++ +..|....|.++++++. +.. ++--+++|+..+++.
T Consensus 27 ~F~Di~pll~d----P~af~~lidlf~~h~~~~~--------~~~Id~iaGlEaRGFLF-GP~--iAlalG~~fVPiRK~ 91 (183)
T KOG1712|consen 27 MFQDITPLLLD----PKAFKKLIDLFVDHYRETF--------EMKIDVIAGLEARGFLF-GPS--IALALGAGFVPIRKP 91 (183)
T ss_pred ehhhhhhhhcC----HHHHHHHHHHHHHHHHHHh--------cCcceEEEeeeecceec-CcH--HHHHhCCCeeecccC
Confidence 48899999999 9999999998776654332 23466667878888887 223 455578899999999
Q ss_pred hccCCC---CeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEee
Q 020306 206 SSILPA---IKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVA 282 (328)
Q Consensus 206 r~~lP~---a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~va 282 (328)
.+ +|+ ...|.++|+.|..+++. +.+++|.+|+||||++|||||+.||.+++.+.|+..-...++..+.
T Consensus 92 gK-LPG~~i~~~Y~lEYg~d~~Emq~--------~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~ 162 (183)
T KOG1712|consen 92 GK-LPGEVISESYELEYGEDRFEMQK--------GAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELP 162 (183)
T ss_pred CC-CCCceeEEEEeeecCccceeeec--------cccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEcc
Confidence 99 787 35788999999988775 5687899999999999999999999999999999877778888899
Q ss_pred ChhHHHHHHHhCCCcEEEEe
Q 020306 283 APPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 283 s~~Gi~~L~~~fP~v~Ivta 302 (328)
..+|.++|. .+++|+.
T Consensus 163 ~LkGr~kL~----~~pl~~L 178 (183)
T KOG1712|consen 163 ELKGREKLK----GKPLFSL 178 (183)
T ss_pred ccCCccccC----CCccEEE
Confidence 999998886 3455553
No 10
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=5.6e-13 Score=128.72 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=136.5
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|.+++++++.+.-+.....+.|..++.. + + . .+++++|+.
T Consensus 108 d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~-----------~-~-------------------~-~~~~vvVsp 155 (304)
T PRK03092 108 DRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRD-----------K-Y-------------------D-LDNVTVVSP 155 (304)
T ss_pred CeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHH-----------h-c-------------------C-CCCcEEEEe
Confidence 557788889999999999877766666666555433 1 1 0 124578888
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|..++..+.+.++.++.+++..+|+....+.. ...+++++++ |++|+|||||++||+|+.++++.|+++|+. +
T Consensus 156 d~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~-~~~~~~~dv~-gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~--~ 231 (304)
T PRK03092 156 DAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQV-VANRVVGDVE-GRTCVLVDDMIDTGGTIAGAVRALKEAGAK--D 231 (304)
T ss_pred cCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCce-EEEecCcCCC-CCEEEEEccccCcHHHHHHHHHHHHhcCCC--e
Confidence 99999999999888876789999999975432222 2567788997 899999999999999999999999999984 7
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC------CCCccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN------DKGFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld------e~gyIvPGLGDaGDR~fG 327 (328)
|.+++. +.++++++++.+.-=+.-++|.+|....+ +.-.+.|-++++..|++.
T Consensus 232 I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~tip~~~~~~~~~~~~~sva~~la~~i~~~~~ 292 (304)
T PRK03092 232 VIIAATHGVLSGPAAERLKNCGAREVVVTDTLPIPEEKRFDKLTVLSIAPLLARAIREVFE 292 (304)
T ss_pred EEEEEEcccCChHHHHHHHHCCCCEEEEeeeeccchhhcCCCeEEEEhHHHHHHHHHHHHc
Confidence 888886 88999999998762266788999865322 112678888888888764
No 11
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.43 E-value=1.4e-12 Score=125.94 Aligned_cols=173 Identities=21% Similarity=0.268 Sum_probs=128.8
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++.+..-+|.||+|+||.+..|.....+.|..++.+. ...++..|.+|+
T Consensus 123 drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~------------~~~~d~vVVSPD------------------- 171 (314)
T COG0462 123 DRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREK------------YDLDDPVVVSPD------------------- 171 (314)
T ss_pred CeEEEEcCCchhhcccCCCccccccchHHHHHHHHHh------------cCCCCcEEECCC-------------------
Confidence 4567778899999999999999999999888888772 122234555665
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeec-CCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRD-EETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENK 273 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd-~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~ 273 (328)
.+|..-++.+.+.+. .....|...|+ ..+ +.--..+-+|++ ||+|+|+|||++||||++.|.++|+++|| +
T Consensus 172 -~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~---~v~~~~~~gdV~-gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GA--k 243 (314)
T COG0462 172 -KGGVKRARALADRLG-APLAIIDKRRDSSPN---VVEVMNLIGDVE-GKDVVIVDDIIDTGGTIAKAAKALKERGA--K 243 (314)
T ss_pred -ccHHHHHHHHHHHhC-CCEEEEEEeecCCCC---eEEEeecccccC-CCEEEEEeccccccHHHHHHHHHHHHCCC--C
Confidence 233334455555442 33666777775 211 111245667897 99999999999999999999999999999 4
Q ss_pred cEEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCCCC-------CccccCcccHhHhhhC
Q 020306 274 QIKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVNDK-------GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 274 ~I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~-------gyIvPGLGDaGDR~fG 327 (328)
+|++++. +.+....+++.+..=+.-|+|.+|... .++ =.+.|-+++++.|++.
T Consensus 244 ~V~a~~tH~vfs~~a~~~l~~~~i~~vivTnTi~~~-~~~~~~~~~~isva~liaeaI~ri~~ 305 (314)
T COG0462 244 KVYAAATHGVFSGAALERLEASAIDEVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRIHN 305 (314)
T ss_pred eEEEEEEchhhChHHHHHHhcCCCCEEEEeCCcccc-cccccCceEEEEhHHHHHHHHHHHHc
Confidence 7888888 777778888887633677999999885 322 2899999999999875
No 12
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.38 E-value=8.9e-12 Score=110.38 Aligned_cols=119 Identities=16% Similarity=0.311 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCC-CCeeEEEEE
Q 020306 141 CPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILP-AIKTYHLGI 219 (328)
Q Consensus 141 ~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP-~a~~g~I~i 219 (328)
..++.+.+.++++.+... + . .++.++|+++|+|+.+++.+.+.++ ...++++.+
T Consensus 5 ~~~i~~~i~~lA~~I~~~-----~-------------------~-~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~ 59 (166)
T TIGR01203 5 EEQIKARIAELAKQITED-----Y-------------------A-GKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAV 59 (166)
T ss_pred HHHHHHHHHHHHHHHHHH-----c-------------------C-CCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEE
Confidence 566777778877666422 1 1 1347799999999999999999886 457777776
Q ss_pred e--ecC-CcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHH
Q 020306 220 S--RDE-ETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPAL 287 (328)
Q Consensus 220 ~--Rd~-~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi 287 (328)
. ++. .+.+...++.+++.++. |++|||||||++||+|+.++++.|++.|+ ++|.+++++..+.+.
T Consensus 60 ~~Y~~~~~~~~~~~~~~~~~~~~~-gk~vlivDDii~TG~Tl~~~~~~l~~~g~--~~i~~~~l~~k~~~~ 127 (166)
T TIGR01203 60 SSYGNGMQSSGDVKILKDLDLSIK-GKDVLIVEDIVDTGLTLQYLLDLLKARKP--KSLKIVTLLDKPSRR 127 (166)
T ss_pred eeccCCCcccCceEEecCCCCCCC-CCEEEEEeeeeCcHHHHHHHHHHHHHCCC--CEEEEEEEEecCccC
Confidence 5 533 33333345567888887 89999999999999999999999999997 479999998887773
No 13
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.32 E-value=2.3e-11 Score=118.81 Aligned_cols=174 Identities=21% Similarity=0.277 Sum_probs=131.7
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++.+.+-+|++++++++.+.-+.......|..++.+ .+ + +++++|+.
T Consensus 140 d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~----------~~--------------------~---~~~vvVsP 186 (330)
T PRK02812 140 DRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLAS----------KN--------------------L---EDIVVVSP 186 (330)
T ss_pred CEEEEEECCchHHcCccCCCceeeeChHHHHHHHHh----------cC--------------------C---CCeEEEEE
Confidence 456777889999999998887777777777765533 01 1 24678999
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
-.+|..+++.+.+.+++++.+.+..+|+..+.. ....++++++ |++|+||||+++||+|+.+|++.|++.|+ ++
T Consensus 187 D~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~---~~~~~~~~v~-g~~viiVDDii~TG~T~~~a~~~L~~~Ga--~~ 260 (330)
T PRK02812 187 DVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA---EVLNVIGDVK-GKTAILVDDMIDTGGTICEGARLLRKEGA--KQ 260 (330)
T ss_pred CCccHHHHHHHHHHhCCCCEEEEEeeccCCcee---eeEeccccCC-CCEEEEEccccCcHHHHHHHHHHHhccCC--Ce
Confidence 999999999999888777788887777643321 1234566786 89999999999999999999999999998 47
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC------CCCccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN------DKGFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld------e~gyIvPGLGDaGDR~fG 327 (328)
|.+++. +++.+++++|.+..=+.-++|.++..... +.-.+.|-|++++.|.+.
T Consensus 261 v~~~~tH~v~s~~a~~~l~~~~id~iv~tnti~~~~~~~~~~~~~~~va~lla~~i~~~~~ 321 (330)
T PRK02812 261 VYACATHAVFSPPAIERLSSGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRIHE 321 (330)
T ss_pred EEEEEEcccCChHHHHHHhhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHHc
Confidence 888884 99999999998642256677888754211 113688888998888764
No 14
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.31 E-value=2.6e-11 Score=117.40 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=127.2
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|++++++++.+.-+.....+.+..++.+ ++ + ++.++|++
T Consensus 119 d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~----------~~--------------------~---~~~vvv~p 165 (309)
T PRK01259 119 DRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQ----------KN--------------------L---ENLVVVSP 165 (309)
T ss_pred CEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHh----------cC--------------------C---CCcEEEEE
Confidence 456777889999999998777766666666655433 01 1 34678999
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
.++|+.+...+.+.+ +.+...+.-.|...... . -..+.++++ |++|+|+||+++||+|+.++++.|+++|+. +
T Consensus 166 d~Gg~~~A~~la~~L-g~~~~~~~k~r~~~~~~-~--~~~~~~~~~-g~~vliVDDii~TG~T~~~a~~~l~~~Ga~--~ 238 (309)
T PRK01259 166 DVGGVVRARALAKRL-DADLAIIDKRRPRANVS-E--VMNIIGDVE-GRDCILVDDMIDTAGTLCKAAEALKERGAK--S 238 (309)
T ss_pred CCCcHHHHHHHHHHh-CCCEEEEEeecccceeE-E--EEeecccCC-CCEEEEEecccCcHHHHHHHHHHHHccCCC--E
Confidence 999999999988866 35555554444322211 1 123345676 899999999999999999999999999984 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC----CC---CccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN----DK---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld----e~---gyIvPGLGDaGDR~fG 327 (328)
|.+++. ++++++.+++.+..++.-++|.+++...+ ++ -.+.|-+.++..+.+.
T Consensus 239 v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~~~ 300 (309)
T PRK01259 239 VYAYATHPVLSGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISN 300 (309)
T ss_pred EEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHHhc
Confidence 777776 89999999999888899999999976522 11 2677778888877653
No 15
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.25 E-value=1.3e-10 Score=113.06 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=125.9
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|++++++++.+.-+.......|..++.+ . + + . +++++|+.
T Consensus 126 d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~-----------~-~----------------~-~---~~~vVVsP 173 (319)
T PRK04923 126 DRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWR-----------A-Y----------------G-T---DNLIVVSP 173 (319)
T ss_pred CEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHH-----------h-c----------------C-C---CCCEEEEE
Confidence 567788889999999999887766665555544422 1 0 0 1 23567777
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|...+..+.+.+..++...+.-+|+..+... -..+.++++ |++|+|||||++||+|+.++.+.|+++|+. +
T Consensus 174 D~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~---~~~~~gdv~-Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~--~ 247 (319)
T PRK04923 174 DVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT---VMNIIGDVQ-GKTCVLVDDLVDTAGTLCAAAAALKQRGAL--K 247 (319)
T ss_pred CCchHHHHHHHHHHcCCCCEEEeccccCCCCceE---EEecccCCC-CCEEEEEecccCchHHHHHHHHHHHHCCCC--E
Confidence 8888888888887675456666666665433211 123456787 999999999999999999999999999985 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC----CC---CccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN----DK---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld----e~---gyIvPGLGDaGDR~fG 327 (328)
|.+++. +.+.++.+++.+..=+.-++|.+|...-+ .+ -.+.|-|+++..|++.
T Consensus 248 V~~~~THgvfs~~a~~~l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~~~ 309 (319)
T PRK04923 248 VVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAF 309 (319)
T ss_pred EEEEEECcccCchHHHHHhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHHHc
Confidence 777777 88889999997652266788899864311 11 2788999999988763
No 16
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.24 E-value=7.3e-11 Score=105.16 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCCC-----Ce
Q 020306 139 TPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA-----IK 213 (328)
Q Consensus 139 T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~-----a~ 213 (328)
-+..+|...++++++.+.+.- + ++ .+.++++++++|+.+...+.+.++. .+
T Consensus 7 ~s~~~i~~~i~~la~~i~~~~-~-------------------~~----~~~viv~il~gG~~~a~~La~~L~~~~~~~~~ 62 (176)
T PRK05205 7 LDAEALRRALTRIAHEIIERN-K-------------------GL----DNLVLVGIKTRGVWLAERLAERLEQLEGVDVP 62 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHHc-C-------------------CC----CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCc
Confidence 346778888888877664210 0 11 3478999999999999988877642 34
Q ss_pred eEEEE--EeecCCc--c-cceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEee
Q 020306 214 TYHLG--ISRDEET--L-QPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVA 282 (328)
Q Consensus 214 ~g~I~--i~Rd~~t--~-e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~va 282 (328)
.+++. .||+... . .....+..++.++. |++||||||+++||+|+.++++.|++.|++ ++|.+++++.
T Consensus 63 ~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~-gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~-~~v~~avL~~ 134 (176)
T PRK05205 63 VGELDITLYRDDLTKKGLHPQVKPTDIPFDIE-GKRVILVDDVLYTGRTIRAALDALFDYGRP-ARVQLAVLVD 134 (176)
T ss_pred cceEEEEEeecCccccCcccccccccCCCCCC-CCEEEEEecccCcHHHHHHHHHHHHhcCCC-cEEEEEEEEE
Confidence 66654 4565432 1 23334466777887 899999999999999999999999999953 6788888876
No 17
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.22 E-value=2.1e-10 Score=111.86 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=126.8
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|.+++++++.+.-|.....+.|..++.+. . ++ .+++++|+.
T Consensus 128 d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~----------~--------------------~~-~~~~vvV~p 176 (323)
T PRK02458 128 DRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKK----------G--------------------LS-GSDVVVVSP 176 (323)
T ss_pred CeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHh----------C--------------------CC-CCceEEEEE
Confidence 4567778899999999998888777777776655431 1 11 134678888
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|..+++.+.+.+. .+...+...|+..+.+. ..+.++++ |++|+|||||++||+|+.+|.+.|++.|+. +
T Consensus 177 d~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~~~----~~i~gdV~-gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~--~ 248 (323)
T PRK02458 177 KNSGIKRARSLAEYLD-APIAIIDYAQDDSEREE----GYIIGDVA-GKKAILIDDILNTGKTFAEAAKIVEREGAT--E 248 (323)
T ss_pred CCChHHHHHHHHHHhC-CCEEEEEEecCCCccee----eccccccC-CCEEEEEcceeCcHHHHHHHHHHHHhCCCC--c
Confidence 9999999998888663 55555555554322211 23456787 899999999999999999999999999994 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC--CC---CccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN--DK---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld--e~---gyIvPGLGDaGDR~fG 327 (328)
|.+++. +.+.++.++|.+..=+.-+.|.+|...-. .+ -.+.|-++++..|++.
T Consensus 249 V~~~~tHgif~~~a~~~l~~s~i~~iv~TdTi~~~~~~~~k~~~isva~lla~~i~~~~~ 308 (323)
T PRK02458 249 IYAVASHGLFAGGAAEVLENAPIKEILVTDSVATKERVPKNVTYLSASELIADAIIRIHE 308 (323)
T ss_pred EEEEEEChhcCchHHHHHhhCCCCEEEEECCcCCchhcCCCcEEEEhHHHHHHHHHHHHc
Confidence 777777 88889999998762266788999854311 11 2678888888888764
No 18
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.20 E-value=2.9e-10 Score=110.66 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=123.3
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++.+..-+|++++++++.+.-|.....+.+..++.+. . + + ..+.++|+.
T Consensus 124 d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~----------~-~-------------------~-~~~~vvVsP 172 (320)
T PRK02269 124 DRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRR----------G-L-------------------V-GDDVVVVSP 172 (320)
T ss_pred CEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHh----------C-C-------------------C-CCCcEEEEE
Confidence 5577788899999999987766555555554444320 0 1 1 123567888
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|..+++.+.+.+. .+...+...|.....+.... ..+-++++ |++||||||+++||+|+.++.+.|++.|+. +
T Consensus 173 d~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~-~~~~gdv~-Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~--~ 247 (320)
T PRK02269 173 DHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEV-MNIIGNVK-GKKCILIDDMIDTAGTICHAADALAEAGAT--E 247 (320)
T ss_pred CccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEE-EEeccccC-CCEEEEEeeecCcHHHHHHHHHHHHHCCCC--E
Confidence 8888888888887663 44444444454322111111 23345776 899999999999999999999999999985 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC---CC---CccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN---DK---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld---e~---gyIvPGLGDaGDR~fG 327 (328)
|.+++. +.+.++.+++.+..=+.-++|.+|....+ ++ -.+.|-|+++..|+++
T Consensus 248 V~~~~tHglf~~~a~~~l~~~~i~~iv~Tdti~~~~~~~~~k~~~isva~~la~~i~~~~~ 308 (320)
T PRK02269 248 VYASCTHPVLSGPALDNIQKSAIEKLVVLDTIYLPEERLIDKIEQISIADLLGEAIIRIHE 308 (320)
T ss_pred EEEEEECcccCchHHHHHHhCCCCEEEEeCCCCCccccccCCeEEEEhHHHHHHHHHHHHc
Confidence 777777 88899999998752266788999854311 11 2788999999988765
No 19
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.19 E-value=5.6e-10 Score=107.92 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=125.0
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|++++++++.+..+.......|.+++.+ . . . ++.++|+.
T Consensus 120 d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~-----------~-~------------------~---~~~viv~p 166 (308)
T TIGR01251 120 DRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKK-----------K-I------------------L---DNPVVVSP 166 (308)
T ss_pred CEEEEecCChHHhcCcCCCceecccCHHHHHHHHHh-----------h-C------------------C---CCCEEEEE
Confidence 456777889999999998766655544444444322 1 0 1 23568888
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|..+...+.+.+. .+.+.+...|+..+. +.....++++++ |++|+|+||+++||+|+.++++.|++.|++ +
T Consensus 167 d~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~--~~~~~~~~~~v~-g~~vliVDDii~tG~Tl~~a~~~l~~~ga~--~ 240 (308)
T TIGR01251 167 DAGGVERAKKVADALG-CPLAIIDKRRISATN--EVEVMNLVGDVE-GKDVVIVDDIIDTGGTIAKAAEILKSAGAK--R 240 (308)
T ss_pred CCchHHHHHHHHHHhC-CCEEEEEEEecCCCC--EEEEEecccccC-CCEEEEEccccCCHHHHHHHHHHHHhcCCC--E
Confidence 9999999988888663 677777777763222 223445677886 899999999999999999999999999984 7
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC----CCCccccCcccHhHhhh
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN----DKGFIVPGLGDAGDRSF 326 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld----e~gyIvPGLGDaGDR~f 326 (328)
|++++. +.++++++++.+...+.-++|.++...-. ..-.+.|-|+++..|.+
T Consensus 241 v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~~~~~~~~~~~~v~va~~la~~i~~~~ 298 (308)
T TIGR01251 241 VIAAATHGVFSGPAIERIANAGVEEVIVTNTIPHEKHKPKVSVISVAPLIAEAIRRIH 298 (308)
T ss_pred EEEEEEeeecCcHHHHHHHhCCCCEEEEeCCCCccccCCCcEEEEhHHHHHHHHHHHh
Confidence 888875 57899999999875577788888755311 11256777777777765
No 20
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.19 E-value=5e-10 Score=111.42 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=123.5
Q ss_pred CceEEEeCCchhHHHHHhh-hcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSI-LRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIP 193 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~llti-LRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVs 193 (328)
++....-+|.+++++++.+ .-|.......|..++.. + ..+ ++ .+ .++.++|+
T Consensus 161 d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~-------~-i~~-l~-----------------~d-~~~~VVVs 213 (382)
T PRK06827 161 DNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLK-------N-EKD-LE-----------------ID-KDHLMVIS 213 (382)
T ss_pred CeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHH-------h-ccc-cc-----------------cc-CCCcEEEE
Confidence 4567778899999999984 46666666666655432 1 001 10 01 12456777
Q ss_pred EcCcChHHHHHHhccCCCCeeEEEEEeecCCc---c-cceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 020306 194 ILRAGLVLVEHASSILPAIKTYHLGISRDEET---L-QPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269 (328)
Q Consensus 194 ILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t---~-e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~G 269 (328)
.-.+|...+..+.+.+ +.+...+.-.|+..+ . ....++..++.+++ |++|||+|||++||+|+..|++.|+++|
T Consensus 214 PD~Gg~~rA~~~A~~L-g~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~-gr~vIIVDDII~TG~Tl~~aa~~Lk~~G 291 (382)
T PRK06827 214 PDTGAMDRAKYYASVL-GVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVE-GKDVLIVDDMIASGGSMIDAAKELKSRG 291 (382)
T ss_pred ECccchHHHHHHHHHh-CCCEEEEEcccCCcccccCCCceEEEecCCcccC-CCEEEEEeCCcCcHHHHHHHHHHHHHcC
Confidence 7777777777776655 345555555554321 1 13345555665887 8999999999999999999999999999
Q ss_pred CCcccEEEEEEeeC-hhHHHHHHHhCC----CcEEEEeEeCCCCC---C-C---CccccCcccHhHhhhC
Q 020306 270 VENKQIKVISAVAA-PPALQKLSENFH----GLHVYTGIIDPTVN---D-K---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 270 a~~~~I~vv~~vas-~~Gi~~L~~~fP----~v~IvtaaID~~Ld---e-~---gyIvPGLGDaGDR~fG 327 (328)
+. +|+++++.+. .+|++++.++|+ +.-+.|.+|...-+ . + -.+.|-|++++.|++.
T Consensus 292 A~--~V~~~~tH~vf~~a~~~l~~~~~~g~i~~iv~TdTi~~~~~~~~~~~~~~isva~llA~~I~~~~~ 359 (382)
T PRK06827 292 AK--KIIVAATFGFFTNGLEKFDKAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNH 359 (382)
T ss_pred CC--EEEEEEEeecChHHHHHHHhhcccCCCCEEEEeCCCcCchhhcccCCeEEEEcHHHHHHHHHHHHc
Confidence 84 7888887543 499999988764 34577888844311 1 1 2788999999998774
No 21
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.12 E-value=1.6e-09 Score=104.66 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=115.6
Q ss_pred ceEEEeCCc---hhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEE
Q 020306 116 RMLVFVPPH---PLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVI 192 (328)
Q Consensus 116 ~~~v~v~~~---P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iV 192 (328)
+....-+|+ +++++++.+..+.......|.+++.+ . + ++.++|
T Consensus 120 ~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~-----------~-~----------------------~~~vVV 165 (301)
T PRK07199 120 RLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRA-----------H-V----------------------PRPLLI 165 (301)
T ss_pred eEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHh-----------c-C----------------------CCcEEE
Confidence 344445554 79999999888877666666665432 0 1 113355
Q ss_pred EEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCc
Q 020306 193 PILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272 (328)
Q Consensus 193 sILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~ 272 (328)
+...+|..+...+.+.+. .+...+...|.... +.... ....++++ |++|+||||+++||+|+.++.+.|++.|+.
T Consensus 166 sPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~-~~~~~-~~~~~~v~-Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~- 240 (301)
T PRK07199 166 GPDEESEQWVAAVAERAG-APHAVLRKTRHGDR-DVEIS-LPDAAPWA-GRTPVLVDDIVSTGRTLIEAARQLRAAGAA- 240 (301)
T ss_pred EeCCChHHHHHHHHHHhC-CCEEEEEEEecCCC-eEEEE-eccCcccC-CCEEEEEecccCcHHHHHHHHHHHHHCCCc-
Confidence 556666777776666443 44444554554322 11111 11223566 999999999999999999999999999984
Q ss_pred ccEEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHhHhhhC
Q 020306 273 KQIKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFG 327 (328)
Q Consensus 273 ~~I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaGDR~fG 327 (328)
+|.+++. +.+.++.+++.+..=+.-++|.+|.... +.-.+.|-++++..|+++
T Consensus 241 -~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdti~~~~-~~~sva~lla~~i~~~~~ 295 (301)
T PRK07199 241 -SPDCVVVHALFAGDAYSALAAAGIARVVSTDTVPHPS-NAISLAPLLAEALRREFD 295 (301)
T ss_pred -EEEEEEEeeeCChHHHHHHHhCCCCEEEEeCCccCCC-CEEehHHHHHHHHHHHhc
Confidence 6777765 7889999999775325678889886542 235788999999988765
No 22
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.09 E-value=1.7e-09 Score=103.56 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=111.9
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|++++++++.+..+..... ..++.++ . .+ + .+.+++++
T Consensus 116 d~vitvD~H~~~~~~~f~~~~~~l~a~-------~~la~~i-~---~~--------------------~---~~~vvv~p 161 (285)
T PRK00934 116 DRIITINIHEPSILEFFPIPFINLDAA-------PLIAEYI-G---DK--------------------L---DDPLVLAP 161 (285)
T ss_pred CEEEEEcCChHHHcCcCCCcEeEeecH-------HHHHHHH-H---hc--------------------C---CCCEEEEe
Confidence 566777889999999998766543332 2222222 0 01 1 12357788
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
..+|..+...+.+.+. .+...+...|...+ +... .....+++ |++|+||||+++||+|+.++.+.|+++|+. +
T Consensus 162 d~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~-~~~~--~~~~~~v~-Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~--~ 234 (285)
T PRK00934 162 DKGALELAKEAAEILG-CEYDYLEKTRISPT-EVEI--APKNLDVK-GKDVLIVDDIISTGGTMATAIKILKEQGAK--K 234 (285)
T ss_pred CCchHHHHHHHHHHhC-CCEEEEEEEecCCC-eEEE--eccccccC-CCEEEEEcCccccHHHHHHHHHHHHHCCCC--E
Confidence 9999999888877664 55555555553322 1111 11223576 899999999999999999999999999984 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccCcccHh
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPGLGDAG 322 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPGLGDaG 322 (328)
|.++++ +.++++.+++.+.--+.-++|.+++.++ +.-.+.|-|+++.
T Consensus 235 V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnti~~~~-~~~~va~~la~~i 283 (285)
T PRK00934 235 VYVACVHPVLVGDAILKLYNAGVDEIIVTDTLESEV-SKISVAPLIADLL 283 (285)
T ss_pred EEEEEEeeccCcHHHHHHHhCCCCEEEEcCCCCCCc-eEEEcHHHHHHHH
Confidence 777775 8899999999886336667788876542 2346666666654
No 23
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.08 E-value=2.9e-09 Score=104.28 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=119.5
Q ss_pred CceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEE
Q 020306 115 DRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsI 194 (328)
++....-+|.++++++|.+..|.......|..++.+ . +. . +++++|+.
T Consensus 128 d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~-----------~-~~-----------------~---~~~vvVsP 175 (332)
T PRK00553 128 TRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLE-----------L-LG-----------------K---KDLVVVSP 175 (332)
T ss_pred CEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHH-----------h-cC-----------------C---CCeEEEEE
Confidence 456777889999999999888766665555444321 0 11 1 23456777
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
-.+|...++.+.+.+ +.+...+.-.|+.... ... ..+.++++ |++|+||||+++||+|+.++.+.|++.|+. .
T Consensus 176 D~gg~~rA~~lA~~l-g~~~~vi~K~r~~~~~-~~~--~~~~gdv~-Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~--~ 248 (332)
T PRK00553 176 DYGGVKRARLIAESL-ELPLAIIDKRRPKHNV-AES--INVLGEVK-NKNCLIVDDMIDTGGTVIAAAKLLKKQKAK--K 248 (332)
T ss_pred CCCcHHHHHHHHHHh-CCCEEEEEEecCCcce-Eee--EEeeccCC-CCEEEEEeccccchHHHHHHHHHHHHcCCc--E
Confidence 777777777777655 2444444444433221 111 22345776 899999999999999999999999999984 6
Q ss_pred EEEEEE--eeChhHHHHHHHhC---C-CcEEEEeEeCCCCCC---C---CccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENF---H-GLHVYTGIIDPTVND---K---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~f---P-~v~IvtaaID~~Lde---~---gyIvPGLGDaGDR~fG 327 (328)
|.+++. +.+.++.+++.+.+ + +.-+.|.++...-.. + -.+.|-+++++.|++.
T Consensus 249 V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip~~~~~~~~~~~~vsva~~la~~i~~~~~ 313 (332)
T PRK00553 249 VCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQTKFEKKPQFKVVDLAHLYEEVLLCYAN 313 (332)
T ss_pred EEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCccCcccccCCCeEEEEhHHHHHHHHHHHhc
Confidence 666665 88899999997641 2 566888888543221 1 2688889999988764
No 24
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.03 E-value=2.1e-09 Score=95.25 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccC---CC--Cee
Q 020306 140 PCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSIL---PA--IKT 214 (328)
Q Consensus 140 ~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~l---P~--a~~ 214 (328)
+...+++.+.|++..++|.- +.+ .+++++.|-..|..+++.+.+-+ .+ ++.
T Consensus 8 d~~~i~RtitRia~eIiErn---------------------k~~---~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~ 63 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERN---------------------KGL---DNLVLVGIKTRGVPLAERLAERIEELEGIEVPV 63 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHh---------------------CCC---CceEEEeEecCCHHHHHHHHHHHHHHhCCCCCe
Confidence 47789999999998888652 112 35889999999999988776432 22 457
Q ss_pred EE--EEEeecCCccc----ceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEee
Q 020306 215 YH--LGISRDEETLQ----PSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVA 282 (328)
Q Consensus 215 g~--I~i~Rd~~t~e----~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~va 282 (328)
|. |.+|||+.+.. +...-..+|.++. |++|+||||+|.||.|+.||++.|.+.| +|+.|.+++++.
T Consensus 64 g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~-~k~VILVDDVLytGRTIRAAldal~d~G-RPa~I~LavLVD 135 (179)
T COG2065 64 GELDITLYRDDLTQKGPLRPQAKTTILPFDIT-GKRVILVDDVLYTGRTIRAALDALVDYG-RPAKIQLAVLVD 135 (179)
T ss_pred eeEEeEEeechhhhcCccCCcccCccCccccc-CCEEEEEeeecccCccHHHHHHHHHhcC-CcceEEEEEEEc
Confidence 75 77899976633 2233356788898 8999999999999999999999999999 578999999986
No 25
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.00 E-value=7.5e-09 Score=104.45 Aligned_cols=176 Identities=17% Similarity=0.132 Sum_probs=113.8
Q ss_pred CceEEEeCCchhHHHHHh--hhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCC-cce-eeeeecCCCCee
Q 020306 115 DRMLVFVPPHPLIKHWVS--ILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM-GVA-SVEFIDPREPVA 190 (328)
Q Consensus 115 ~~~~v~v~~~P~i~~llt--iLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~-G~~-~~~~i~~~~~i~ 190 (328)
++.+..-+|++++++++. +.-|.......|..++.. .+..+..|..|+ |.. ..+.
T Consensus 238 d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~-------------~~l~~pVVVsPD~Ga~~RAr~-------- 296 (439)
T PTZ00145 238 DRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTK-------------KDLYKPVIVSPDAGGVYRARK-------- 296 (439)
T ss_pred CeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhh-------------cCCCccEEEccCcchHHHHHH--------
Confidence 456777889999999996 677766555555554432 122345666776 211 1010
Q ss_pred EEEEcCcChHHHHHHhc-cCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 020306 191 VIPILRAGLVLVEHASS-ILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269 (328)
Q Consensus 191 iVsILRaGl~m~~~lr~-~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~G 269 (328)
+.+.+.. -+.++....+.-+|+..+. .. -..+.+++. |++|||||||++||+|+..|.+.|++.|
T Consensus 297 ----------~A~~L~~~~~~~~~~avl~K~R~~~~~-v~--~~~lvgdV~-Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~G 362 (439)
T PTZ00145 297 ----------FQDGLNHRGISDCGIAMLIKQRTKPNE-IE--KMDLVGNVY-DSDVIIVDDMIDTSGTLCEAAKQLKKHG 362 (439)
T ss_pred ----------HHHHhccccccCCCEEEEEeecCCCCc-eE--EEeccCCCC-CCEEEEEcceeCcHHHHHHHHHHHHHcC
Confidence 1111110 0112334444445543321 11 134457887 8999999999999999999999999999
Q ss_pred CCcccEEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCCCC----CC---CccccCcccHhHhhhC
Q 020306 270 VENKQIKVISA--VAAPPALQKLSENFHGLHVYTGIIDPTVN----DK---GFIVPGLGDAGDRSFG 327 (328)
Q Consensus 270 a~~~~I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~Ld----e~---gyIvPGLGDaGDR~fG 327 (328)
+. +|.+++. +.+.++.++|.+..=+--|+|.+|...-+ ++ -.+.|-|++++.|++.
T Consensus 363 A~--~V~~~~THglfs~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI~~i~~ 427 (439)
T PTZ00145 363 AR--RVFAFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQ 427 (439)
T ss_pred CC--EEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHHHHHhc
Confidence 84 7777776 88899999997752266788999864321 11 2788999999988653
No 26
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.97 E-value=1.4e-08 Score=91.19 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCCC-CeeEEE
Q 020306 139 TPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA-IKTYHL 217 (328)
Q Consensus 139 T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~-a~~g~I 217 (328)
-+..++...+++++..+.+.. ++ . +.++++|+|+++|+.|+..+.+.+.- ..++++
T Consensus 9 ~~~~~i~~~i~~lA~~I~~~~-~~-------------------~---~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l 65 (178)
T PRK15423 9 IPEAEIKARIAELGRQITERY-KD-------------------S---GSDMVLVGLLRGSFMFMADLCREVQVSHEVDFM 65 (178)
T ss_pred cCHHHHHHHHHHHHHHHHHHh-cc-------------------c---CCCeEEEEEecCChHHHHHHHHHhCCCcceeEE
Confidence 347788999999888876432 11 0 13477999999999999999876632 355665
Q ss_pred EE--eecCCc--ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHH
Q 020306 218 GI--SRDEET--LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPAL 287 (328)
Q Consensus 218 ~i--~Rd~~t--~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi 287 (328)
.+ |++..+ .+.. ....++.+++ |++||||||++.||.|+.++.+.|++.|+ +.+.+++++.-+.+.
T Consensus 66 ~~ssY~~~~~~~~~v~-i~~~~~~~v~-gk~VLlVDDIiDTG~TL~~l~~~l~~~~~--~~v~~avL~~K~~~r 135 (178)
T PRK15423 66 TASSYGSGMSTTRDVK-ILKDLDEDIR-GKDVLIVEDIIDSGNTLSKVREILSLREP--KSLAICTLLDKPSRR 135 (178)
T ss_pred EEEEecCCCcccCceE-EecCCCCCCC-CCEEEEEeeecCchHHHHHHHHHHHhCCC--CEEEEEEEEECCCCC
Confidence 55 443322 2222 2345666787 89999999999999999999999999997 578888888766654
No 27
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.96 E-value=1.8e-08 Score=92.98 Aligned_cols=126 Identities=12% Similarity=0.197 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCC----CCee
Q 020306 139 TPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILP----AIKT 214 (328)
Q Consensus 139 T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP----~a~~ 214 (328)
-+..++...+++|+..+.+.. ++ + + +.++++++++.||++|+.|...+.+.+. ..++
T Consensus 28 is~e~I~~~i~~LA~~I~~~~-~~-~----------------~-~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~v 88 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDY-RS-F----------------K-LTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKV 88 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHh-hh-c----------------c-ccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeE
Confidence 447788889999988886442 11 0 0 1112457799999999999888865442 2467
Q ss_pred EEEEE--eecCC-c-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHH
Q 020306 215 YHLGI--SRDEE-T-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPAL 287 (328)
Q Consensus 215 g~I~i--~Rd~~-t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi 287 (328)
+++.+ |++.. + .++. ....++.++. |++||||||++.||.|+.++++.|+++|+ ++|.+++++.-+.+.
T Consensus 89 dfi~vssY~~~~~s~g~~~-i~~~~~~~i~-gk~VLIVDDIvDTG~TL~~v~~~l~~~~p--~svk~avL~dK~~~r 161 (211)
T PTZ00271 89 EFICASSYGTGVETSGQVR-MLLDVRDSVE-NRHILIVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSGR 161 (211)
T ss_pred EEEEEEecCCCCcccCceE-EecCCCCCCC-CCEEEEEecccCCHHHHHHHHHHHHhcCC--CEEEEEEEEEcccCC
Confidence 77655 54322 2 2232 2356677887 89999999999999999999999999986 589999998876664
No 28
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.92 E-value=3.2e-08 Score=88.86 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCCC-Cee
Q 020306 136 NEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA-IKT 214 (328)
Q Consensus 136 D~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~-a~~ 214 (328)
|..-+..+|...+++++..+... +. ....++|++.++|+.++..+.+.+.- ...
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~-----~~--------------------~~~~viV~i~~gg~~~A~~La~~l~~~~~~ 68 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITAD-----LA--------------------DENPLVLCVMGGGLVFTGQLLPRLDFPLEF 68 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHH-----cC--------------------CCCeEEEEECCCcHHHHHHHHHHcCCCccc
Confidence 44455778888888888777543 10 01246899999999999999876531 234
Q ss_pred EEEEEeec--CCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeCh
Q 020306 215 YHLGISRD--EETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAP 284 (328)
Q Consensus 215 g~I~i~Rd--~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~ 284 (328)
+.+...+. ..+.....+...++.++. |++||||||+++||.|+.++.+.|++.|+ ++|.++++..-+
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~-gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga--~~V~~avL~~k~ 137 (181)
T PRK09162 69 DYLHATRYRNETTGGELVWKVKPRESLK-GRTVLVVDDILDEGHTLAAIRDRCLEMGA--AEVYSAVLVDKT 137 (181)
T ss_pred CEEEEEecCCCccCCceeEecCCCCCCC-CCEEEEEccccCcHHHHHHHHHHHHhCCC--CEEEEEEEEEcC
Confidence 44444332 222111122233445676 89999999999999999999999999997 478777766543
No 29
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.91 E-value=3.6e-08 Score=89.32 Aligned_cols=120 Identities=12% Similarity=0.177 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCC----CCeeE
Q 020306 140 PCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILP----AIKTY 215 (328)
Q Consensus 140 ~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP----~a~~g 215 (328)
+..+++..+.++++.+.+. . . ..+.++|+++++|++++..+.+.+. ...+.
T Consensus 13 s~~~I~~~i~~lA~~I~~~-----~-------------------~-~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~ 67 (189)
T PLN02238 13 TAEDISARVAELAAQIASD-----Y-------------------A-GKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVD 67 (189)
T ss_pred CHHHHHHHHHHHHHHHHHH-----c-------------------C-CCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEE
Confidence 3667777778877666422 1 0 1235689999999999888776553 23444
Q ss_pred EEEEeec--C--CcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHH
Q 020306 216 HLGISRD--E--ETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPAL 287 (328)
Q Consensus 216 ~I~i~Rd--~--~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi 287 (328)
++...+- . .+.++++....++.+++ |++||||||+++||+|+.++++.|++.|+ +.|.+++++.-+...
T Consensus 68 fi~~~sy~~~~~~~g~~~i~~~~~~~~v~-gk~VliVDDIidTG~Tl~~~~~~l~~~g~--~~v~~avL~dK~~~r 140 (189)
T PLN02238 68 FIRASSYGGGTESSGVAKVSGADLKIDVK-GKHVLLVEDIVDTGNTLSALVAHLEAKGA--ASVSVCALLDKRARR 140 (189)
T ss_pred EEEeeecCCCccccCceeEecCCCCCCCC-CCEEEEEecccchHHHHHHHHHHHHhCCC--CEEEEEEEEECCccc
Confidence 5544332 1 22233333334556776 89999999999999999999999999997 478888877755443
No 30
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.90 E-value=8.4e-09 Score=84.97 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=58.2
Q ss_pred EEEEcCcChHHHHHHhccCCCCeeEEE--------EEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHH
Q 020306 191 VIPILRAGLVLVEHASSILPAIKTYHL--------GISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAAL 262 (328)
Q Consensus 191 iVsILRaGl~m~~~lr~~lP~a~~g~I--------~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai 262 (328)
++++.++|+++...+.+.+........ ........ +....+......+. |++|||+||+++||+|+..++
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-gk~vliVDDvi~tG~Tl~~~~ 108 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREK-NNQELFIIDKEDIK-GKRVLIVDDVIDTGGTLKEAI 108 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEET-EEEEEEEEESSSGT-TSEEEEEEEEESSSHHHHHHH
T ss_pred EEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhcc-CceEEeeccccccc-ceeEEEEeeeEcccHHHHHHH
Confidence 899999999999988775542111111 11111111 12222333445565 899999999999999999999
Q ss_pred HHHHHcCCCcccEEEEEE
Q 020306 263 NLVKECGVENKQIKVISA 280 (328)
Q Consensus 263 ~~L~~~Ga~~~~I~vv~~ 280 (328)
+.|++.|++ .+.++++
T Consensus 109 ~~L~~~g~~--~v~~~vl 124 (125)
T PF00156_consen 109 ELLKEAGAK--VVGVAVL 124 (125)
T ss_dssp HHHHHTTBS--EEEEEEE
T ss_pred HHHHhCCCc--EEEEEEE
Confidence 999999974 5655554
No 31
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.90 E-value=2.2e-08 Score=94.14 Aligned_cols=121 Identities=14% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCCC------
Q 020306 138 QTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA------ 211 (328)
Q Consensus 138 ~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~------ 211 (328)
.-+..+.+..+++|++.+.+. . + .++++++.||++|+.|...+.+.+..
T Consensus 57 Lis~~~I~~rI~~LA~~I~~d-----y----------------~----~~~~vilgILkGg~~FaadL~~~L~~~~~~~~ 111 (241)
T PTZ00149 57 LLPNGLIKDRVEKLAYDIKQV-----Y----------------G----NEELHILCILKGSRGFFSALVDYLNRIHNYSS 111 (241)
T ss_pred EeCHHHHHHHHHHHHHHHHHH-----c----------------C----CCCeEEEEECCCCHHHHHHHHHHHhhhhhccc
Confidence 455788888889988777532 1 0 14578999999999988776554431
Q ss_pred ----Cee---EEEEE--eecCCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEe
Q 020306 212 ----IKT---YHLGI--SRDEET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAV 281 (328)
Q Consensus 212 ----a~~---g~I~i--~Rd~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~v 281 (328)
.+. +++.+ |++..+ .+..+. ...-.++. |++||||||+++||.|+.++++.|++.|+ ++|.+++++
T Consensus 112 ~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~-~~~~~~l~-gk~VLIVDDIidTG~Tl~~~~~~L~~~g~--~~V~va~L~ 187 (241)
T PTZ00149 112 TESPKPPYQEHYVRVKSYCNDESTGKLEIV-SDDLSCLK-DKHVLIVEDIIDTGNTLVKFCEYLKKFEP--KTIRIATLF 187 (241)
T ss_pred cccCcccccccEEEEEEccCCCcCCceEEe-cccccccC-CCEEEEEEeEeChHHHHHHHHHHHHhcCC--CEEEEEEEE
Confidence 223 66555 555433 334333 33333676 89999999999999999999999999997 579899988
Q ss_pred eChhHH
Q 020306 282 AAPPAL 287 (328)
Q Consensus 282 as~~Gi 287 (328)
..+.+.
T Consensus 188 ~K~~~r 193 (241)
T PTZ00149 188 EKRTPL 193 (241)
T ss_pred ecCccc
Confidence 766543
No 32
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.86 E-value=8.7e-10 Score=99.58 Aligned_cols=88 Identities=27% Similarity=0.331 Sum_probs=67.6
Q ss_pred CCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE--eeChhHHHHHHHhCC-CcEEEEeEeCCCCCC-
Q 020306 235 LPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA--VAAPPALQKLSENFH-GLHVYTGIIDPTVND- 310 (328)
Q Consensus 235 LP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~--vas~~Gi~~L~~~fP-~v~IvtaaID~~Lde- 310 (328)
+-+|++ |+.+||+|||++||+|+.+|.+.|+++||. +|++++. +.+.++.++|.+. + +.-|+|.+|+.+...
T Consensus 77 vVGDV~-gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~--~V~~~aTHgvfs~~A~~~l~~s-~Id~vvvTnTIp~~~~~~ 152 (184)
T PF14572_consen 77 VVGDVK-GKICIIVDDIIDTGGTLIKAAELLKERGAK--KVYACATHGVFSGDAPERLEES-PIDEVVVTNTIPQEEQKL 152 (184)
T ss_dssp EES--T-TSEEEEEEEEESSTHHHHHHHHHHHHTTES--EEEEEEEEE---TTHHHHHHHS-SESEEEEETTS--HHHHH
T ss_pred EEEEcc-CCeEeeecccccchHHHHHHHHHHHHcCCC--EEEEEEeCcccCchHHHHHhhc-CCeEEEEeccccCchhhh
Confidence 457898 999999999999999999999999999994 7888887 8889999999876 5 778999999875311
Q ss_pred --CC----ccccCcccHhHhhh
Q 020306 311 --KG----FIVPGLGDAGDRSF 326 (328)
Q Consensus 311 --~g----yIvPGLGDaGDR~f 326 (328)
++ .|.|-|++++.|++
T Consensus 153 ~~~Ki~vldis~llaeaI~rih 174 (184)
T PF14572_consen 153 QCPKIKVLDISPLLAEAIRRIH 174 (184)
T ss_dssp H-TTEEEE--HHHHHHHHHHHH
T ss_pred cCCCEeEeehHHHHHHHHHHHH
Confidence 11 88999999999986
No 33
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.79 E-value=1.5e-07 Score=84.46 Aligned_cols=121 Identities=15% Similarity=0.286 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCCcceeeeeecCCCCeeEEEEcCcChHHHHHHhccCC-CCeeEEEE
Q 020306 140 PCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILP-AIKTYHLG 218 (328)
Q Consensus 140 ~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~G~~~~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP-~a~~g~I~ 218 (328)
+..+....+.++++++.++ +. ++++.+|+||+++++|+..+.+.+. ..++.++.
T Consensus 13 see~I~~ri~ela~~I~~~------------------------y~-g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~ 67 (178)
T COG0634 13 SEEQIKARIKELAAQITED------------------------YG-GKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMH 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHHh------------------------hC-CCceEEEEEcccchhhHHHHHHhcCCCceeEEEE
Confidence 3666777777777766533 11 1457799999999999888876553 25677777
Q ss_pred Eee--cCCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHH
Q 020306 219 ISR--DEET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQ 288 (328)
Q Consensus 219 i~R--d~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~ 288 (328)
+.+ +..+ .+.+.....+-.++. |++||||||++.||.|+..+.++|+.+|+ +++.+++++--+++.+
T Consensus 68 vSSYg~~t~ssg~v~i~kDld~di~-grdVLiVeDIiDsG~TLs~i~~~l~~r~a--~sv~i~tLldK~~~r~ 137 (178)
T COG0634 68 VSSYGGGTSSSGEVKILKDLDEDIK-GRDVLIVEDIIDSGLTLSKVRDLLKERGA--KSVRIATLLDKPERRK 137 (178)
T ss_pred EeccCCCcccCCceEEecccccCCC-CCeEEEEecccccChhHHHHHHHHHhCCC--CeEEEEEEeeCccccc
Confidence 644 3332 233344456777897 99999999999999999999999999998 5899999988777653
No 34
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.77 E-value=6.2e-08 Score=85.76 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=69.9
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeec-C----------CcccceeeecCCCCCCCCCCEEEEEcCcccchHHH
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRD-E----------ETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTV 258 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd-~----------~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl 258 (328)
+++++...|+.+...+.+.+. .+...+...+. . ...+ ..+..+-+... +|++||||||+++||+|+
T Consensus 49 ~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~gk~VLIVDDIitTG~Tl 125 (169)
T TIGR01090 49 YIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGK-DQLEIHKDAIK-PGQRVLIVDDLLATGGTA 125 (169)
T ss_pred EEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCc-eEEEEehhhcC-CcCEEEEEeccccchHHH
Confidence 467788888888887766542 33222111100 0 0010 11111111123 489999999999999999
Q ss_pred HHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeE
Q 020306 259 VAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 259 ~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
.++++.|++.|++...+.+++.+.+.+|.+++.+. +++++..
T Consensus 126 ~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~---~~~~sl~ 167 (169)
T TIGR01090 126 EATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN---VPVFSLL 167 (169)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC---CceEEEE
Confidence 99999999999976666666667777999999874 6666543
No 35
>PLN02293 adenine phosphoribosyltransferase
Probab=98.69 E-value=7.5e-07 Score=80.72 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=43.8
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHH
Q 020306 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE 292 (328)
Q Consensus 237 ~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~ 292 (328)
+.+.+|++|+||||+++||+|+.+++++|++.|+....+.++..+...+|.+++.+
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~ 175 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKGREKLNG 175 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcC
Confidence 34656999999999999999999999999999985433333333446669998863
No 36
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=98.64 E-value=4.5e-07 Score=88.73 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=57.4
Q ss_pred CCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE--eeChhHHHHHHHh-----CC-CcEEEEeEeCC
Q 020306 235 LPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA--VAAPPALQKLSEN-----FH-GLHVYTGIIDP 306 (328)
Q Consensus 235 LP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~--vas~~Gi~~L~~~-----fP-~v~IvtaaID~ 306 (328)
+..+++ |++|+|+|||++||+|+..+.+.|++.|+. .|.+++. +.+.++.+++.+. -+ +--+.|.+|..
T Consensus 224 ~~~dv~-gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~--~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdTip~ 300 (326)
T PLN02297 224 KEGNPA-GRHVVIVDDLVQSGGTLIECQKVLAAHGAA--KVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDSCPQ 300 (326)
T ss_pred cccccC-CCeEEEEecccCcHHHHHHHHHHHHHCCCc--EEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCCccC
Confidence 345776 899999999999999999999999999985 6777776 8899999999863 12 55688888854
Q ss_pred C
Q 020306 307 T 307 (328)
Q Consensus 307 ~ 307 (328)
.
T Consensus 301 ~ 301 (326)
T PLN02297 301 T 301 (326)
T ss_pred C
Confidence 3
No 37
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.63 E-value=3.9e-07 Score=81.10 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=68.0
Q ss_pred eEEEEcCcChHHHHHHhccC--CCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHH
Q 020306 190 AVIPILRAGLVLVEHASSIL--PAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKE 267 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~l--P~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~ 267 (328)
+++.+-++|+++...+...+ |......+.+.+.........+ +-+.+.+|++|+||||+++||+|+.+|+++|++
T Consensus 57 ~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~---~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~ 133 (173)
T TIGR00336 57 VIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGN---IEGELLEGDKVVVVEDVITTGTSILEAVEIIQA 133 (173)
T ss_pred EEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCc---eecCCCCCCEEEEEeccccChHHHHHHHHHHHH
Confidence 47788899998888776654 3222222222222111111101 112354589999999999999999999999999
Q ss_pred cCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEe
Q 020306 268 CGVENKQIKVISAVAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 268 ~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivta 302 (328)
.|+.+..+.++.--....|.+++.+.+ +++++..
T Consensus 134 ~Ga~v~~~~vlvdr~~~~~~~~l~~~~-gv~~~sl 167 (173)
T TIGR00336 134 AGGQVAGVIIAVDRQERSAGQEFEKEY-GLPVISL 167 (173)
T ss_pred cCCeEEEEEEEEecCchhHHHHHHHhc-CCeEEEE
Confidence 998654443333333335788887653 5776654
No 38
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=98.55 E-value=2.5e-07 Score=88.79 Aligned_cols=174 Identities=21% Similarity=0.219 Sum_probs=119.8
Q ss_pred ceEEEeCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCCCcceeeecCC-cceeeeeecCCCCeeEEEE
Q 020306 116 RMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM-GVASVEFIDPREPVAVIPI 194 (328)
Q Consensus 116 ~~~v~v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~-G~~~~~~i~~~~~i~iVsI 194 (328)
..+..-.|.+|.+++|.+..|.....+.-..+++. ..-.+++..|.+|+ |.. .++ .. ++-.
T Consensus 123 hvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~-----------~~~~~~~~vivSPdaGga-KR~----~s--~ad~ 184 (316)
T KOG1448|consen 123 HVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRE-----------NIPDSENAVIVSPDAGGA-KRV----TS--LADR 184 (316)
T ss_pred eEEEecccchhhCceeeccchhhccchHHHHHHHh-----------hCCCccceEEECCCcchh-hhh----HH--HHHh
Confidence 34556678999999999999998888877777765 21457888999998 322 111 11 1222
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
|.--+++..+-++-- ++.. . .+-|-+|++ |+.++|||||..|+||+..|.+.|.++|++ +
T Consensus 185 l~~~fali~ker~k~------------~~v~--~---~m~LVGDv~-gkvailVDDm~dt~GTl~~aa~~L~~~GA~--k 244 (316)
T KOG1448|consen 185 LNLDFALIHKERRKA------------NEVD--I---RMVLVGDVK-GKVAILVDDMADTCGTLIKAADKLLEHGAK--K 244 (316)
T ss_pred hcchhhhhhhhhhcc------------cccc--e---EEEEEeccC-CcEEEEecccccccchHHHHHHHHHhcCCc--e
Confidence 333333333333210 0111 0 123447897 999999999999999999999999999995 6
Q ss_pred EEEEEE--eeChhHHHHHHHhCCCcEEEEeEeCCC--CCCCC----ccccCcccHhHhhhC
Q 020306 275 IKVISA--VAAPPALQKLSENFHGLHVYTGIIDPT--VNDKG----FIVPGLGDAGDRSFG 327 (328)
Q Consensus 275 I~vv~~--vas~~Gi~~L~~~fP~v~IvtaaID~~--Lde~g----yIvPGLGDaGDR~fG 327 (328)
|+.++. |.+...++++.+..-+..++|.++.-. .-+.. -+.|-++.++.|.++
T Consensus 245 V~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~~~~~~~Idvs~~~ae~irr~h~ 305 (316)
T KOG1448|consen 245 VYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCLEPKLTTIDVSPVLAEAIRRTHN 305 (316)
T ss_pred EEEEEcceeccccHHHHhhhcccceEEEEEeecccccccCCcccEEeeccccchheEEecC
Confidence 766666 999999999998744667888887653 22111 477888998888765
No 39
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.53 E-value=3.5e-06 Score=78.91 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=62.2
Q ss_pred eEEEEcCcChHHHHHHhccCC---CCeeEE--EEEeecCCcc---------cce-eeecC-CCCCCCCCCEEEEEcCccc
Q 020306 190 AVIPILRAGLVLVEHASSILP---AIKTYH--LGISRDEETL---------QPS-IYLNK-LPEKFPEGSRIFVVDPMLA 253 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP---~a~~g~--I~i~Rd~~t~---------e~~-~yy~k-LP~dI~~g~~VlLvDd~LA 253 (328)
++|++-..|+++...+.+.+- ..++.+ ...++++.+. +.. .+..+ ....+ +|++|+||||+++
T Consensus 87 vIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~-~GkrVLIVDDVit 165 (233)
T PRK06031 87 VVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLL-EGRRVALIDDVIS 165 (233)
T ss_pred EEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccC-CCCEEEEEEeEcc
Confidence 467788889888776655442 122221 1122222111 111 11111 11223 4899999999999
Q ss_pred chHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCC
Q 020306 254 TGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295 (328)
Q Consensus 254 TGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP 295 (328)
||+|+.+++++|++.|+++..+.+++.. ...+.+++.+.-|
T Consensus 166 TG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~-g~~~~~~l~~~~~ 206 (233)
T PRK06031 166 SGASIVAGLRLLAACGIEPAGIGAAMLQ-SERWRESLAAAGP 206 (233)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEEEEEEc-cccHHHHHHhcCC
Confidence 9999999999999999966555444433 2445666766544
No 40
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.51 E-value=7.9e-07 Score=81.09 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeec-CCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHH
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRD-EET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKE 267 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd-~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~ 267 (328)
+++++-++|++++..+...+. .+...+.-.+. ..+ ..+...+......+. |++|+||||+++||+|+.++++.|++
T Consensus 88 ~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-gk~VlIVDDVitTG~Tl~~ai~~l~~ 165 (200)
T PRK02277 88 VVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVE-GKRCVIVDDVITSGTTMKETIEYLKE 165 (200)
T ss_pred EEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCC-cCEEEEEeeccCchHHHHHHHHHHHH
Confidence 478889999999888876553 33222111111 011 011111111112455 89999999999999999999999999
Q ss_pred cCCCcccEEEEEEeeChhHHHHH
Q 020306 268 CGVENKQIKVISAVAAPPALQKL 290 (328)
Q Consensus 268 ~Ga~~~~I~vv~~vas~~Gi~~L 290 (328)
.|+. .+.+++ +....|.+++
T Consensus 166 ~Ga~--~v~v~v-lvdk~g~~~~ 185 (200)
T PRK02277 166 HGGK--PVAVVV-LIDKSGIDEI 185 (200)
T ss_pred cCCE--EEEEEE-EEECcchhhh
Confidence 9984 333444 4445677655
No 41
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.45 E-value=1.8e-06 Score=76.74 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=61.0
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCC------------cccceeeecCCCC-CCCCCCEEEEEcCcccchH
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEE------------TLQPSIYLNKLPE-KFPEGSRIFVVDPMLATGG 256 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~------------t~e~~~yy~kLP~-dI~~g~~VlLvDd~LATGg 256 (328)
+++++..+|+.+...+.+.+. .+... +.+... +.....++ ++. .+.+|++|+||||+++||+
T Consensus 54 ~Ivgv~~~Gi~~a~~la~~l~-~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~l~--l~~~~~~~g~~VLIVDDivtTG~ 128 (175)
T PRK02304 54 KIVGIEARGFIFGAALAYKLG-IGFVP--VRKPGKLPRETISESYELEYGTDTLE--IHKDAIKPGDRVLIVDDLLATGG 128 (175)
T ss_pred EEEEEccchHHHHHHHHHHhC-CCEEE--EEcCCCCCCceEeEEEecccCceEEE--EchhhcCCCCEEEEEeCCccccH
Confidence 467788899998887766542 33221 111110 00001111 222 2234899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEEeeChh--HHHHHH
Q 020306 257 TVVAALNLVKECGVENKQIKVISAVAAPP--ALQKLS 291 (328)
Q Consensus 257 Tl~aai~~L~~~Ga~~~~I~vv~~vas~~--Gi~~L~ 291 (328)
|+.++++.|++.|+. .+.+++++...+ |.+++.
T Consensus 129 Tl~~~~~~l~~~Ga~--~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 129 TLEAAIKLLERLGAE--VVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHHHcCCE--EEEEEEEEEcccccchhhcC
Confidence 999999999999984 455666666454 787776
No 42
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.45 E-value=7.5e-07 Score=80.11 Aligned_cols=56 Identities=29% Similarity=0.526 Sum_probs=49.4
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHh
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~ 293 (328)
.+.+|++|+||||++|||||+.+.++++.+.|+....+.++......+|.+++...
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~l~~~ 167 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKKLEDD 167 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccchhhccC
Confidence 45569999999999999999999999999999988888888888888888877764
No 43
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.44 E-value=2.3e-06 Score=76.74 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=63.3
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHc
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKEC 268 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~ 268 (328)
+++++.-+|.++...+...+ +.+...+ ++.... ++...+. +.+.+|++|+||||+++||+|+.++++.|++.
T Consensus 61 ~ivg~~~ggi~lA~~lA~~l-~~p~~~~--rk~~k~yg~~~~~~----g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~ 133 (176)
T PRK13812 61 KLAGVALGAVPLVAVTSVET-GVPYVIA--RKQAKEYGTGNRIE----GRLDEGEEVVVLEDIATTGQSAVDAVEALREA 133 (176)
T ss_pred EEEEeecchHHHHHHHHHHH-CCCEEEE--eccCCcCCCCCeEE----ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHC
Confidence 46777788888887775544 2333222 221111 1111111 34545999999999999999999999999999
Q ss_pred CCCcccEEEEEEeeCh-hHHHHHHHhCCCcEEEEe
Q 020306 269 GVENKQIKVISAVAAP-PALQKLSENFHGLHVYTG 302 (328)
Q Consensus 269 Ga~~~~I~vv~~vas~-~Gi~~L~~~fP~v~Ivta 302 (328)
|+.+..+ ++++--. .|.+++.+. ++++++.
T Consensus 134 Ga~vv~~--~vlvdr~~~~~~~l~~~--g~~v~sL 164 (176)
T PRK13812 134 GATVNRV--LVVVDREEGARENLADH--DVELEAL 164 (176)
T ss_pred CCeEEEE--EEEEECCcchHHHHHhc--CCcEEEE
Confidence 9865444 3344444 345555443 5666554
No 44
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.40 E-value=4e-06 Score=76.26 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=64.8
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHc
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKEC 268 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~ 268 (328)
+++.+.++|++++..+.+.+. .+...+ .++... ...... .. .... |++|+||||+++||+|+.+++++|++.
T Consensus 67 ~Ivgi~~gG~~~A~~la~~L~-~~~~~~--rk~~~~~g~~~~~--~~-~~~~-g~~VliVDDvi~tG~Tl~~~~~~l~~~ 139 (202)
T PRK00455 67 VVAGPATGGIPLAAAVARALD-LPAIFV--RKEAKDHGEGGQI--EG-RRLF-GKRVLVVEDVITTGGSVLEAVEAIRAA 139 (202)
T ss_pred EEEecccCcHHHHHHHHHHhC-CCEEEE--ecccCCCCCCceE--Ec-cCCC-CCEEEEEecccCCcHHHHHHHHHHHHc
Confidence 478899999999988877653 443322 221111 100011 11 1233 899999999999999999999999999
Q ss_pred CCCcccEEEEEEeeChhHHHHHHHhCCCcEEEE
Q 020306 269 GVENKQIKVISAVAAPPALQKLSENFHGLHVYT 301 (328)
Q Consensus 269 Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivt 301 (328)
|+. .+.+++++.-.+|.++..+.+ ++++++
T Consensus 140 Ga~--~v~~~vlv~~~~~~~~~~~~~-g~~~~s 169 (202)
T PRK00455 140 GAE--VVGVAVIVDRQSAAQEVFADA-GVPLIS 169 (202)
T ss_pred CCE--EEEEEEEEECcchHHHHHHhc-CCcEEE
Confidence 984 455666666544444443433 555544
No 45
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.37 E-value=4.5e-06 Score=78.32 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=64.7
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCC-ccc-----------ceeeecCCCC-CCCCCCEEEEEcCcccchH
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEE-TLQ-----------PSIYLNKLPE-KFPEGSRIFVVDPMLATGG 256 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~-t~e-----------~~~yy~kLP~-dI~~g~~VlLvDd~LATGg 256 (328)
+++.+...|+++...+...+ +++... ..++.. +.+ .......+|. .+.+|++||||||+++||+
T Consensus 114 ~Vvtv~~~GI~lA~~lA~~L-~~p~vi--~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 114 VVLTAATDGIPLAVAIASYF-GADLVY--AKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred EEEEECcccHHHHHHHHHHH-CcCEEE--EEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCH
Confidence 56777888998887766544 222221 111110 000 0011122342 3556999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEEeeCh-hHHHHHHHhCCCcEEEE
Q 020306 257 TVVAALNLVKECGVENKQIKVISAVAAP-PALQKLSENFHGLHVYT 301 (328)
Q Consensus 257 Tl~aai~~L~~~Ga~~~~I~vv~~vas~-~Gi~~L~~~fP~v~Ivt 301 (328)
|+.++++++++.|+.+.. +++++... .|.+++.+++ ++++.+
T Consensus 191 Tl~~~~~ll~~~ga~vvg--v~vlv~~~~~~~~~l~~~~-~vpv~s 233 (238)
T PRK08558 191 TQRALLDLARQAGADVVG--VFFLIAVGEVGIDRAREET-DAPVDA 233 (238)
T ss_pred HHHHHHHHHHHcCCEEEE--EEEEEecCchHHHHHhHhc-CCCEEE
Confidence 999999999999986434 33334433 3588887754 455443
No 46
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.37 E-value=9.7e-07 Score=80.17 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeE
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
.+.+|++|+||||+++||+|+.++++++++.|+.+..+.++.......|.+++.+. ++++++..
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~--g~~~~sl~ 176 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEK--GYRVESLA 176 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhc--CCcEEEEE
Confidence 35569999999999999999999999999999966555444433334688887653 45555544
No 47
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=98.36 E-value=8.9e-07 Score=80.50 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeE
Q 020306 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 239 I~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
+.+|++|+||||+++||+|+.++++++++.|+.+..+.++.-.....|.+++.+. ++++++..
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~--gvpv~sL~ 176 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVEL--GYRVESLA 176 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhc--CCcEEEEE
Confidence 4469999999999999999999999999999976555555444445688888653 45555443
No 48
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.36 E-value=3.9e-06 Score=74.76 Aligned_cols=100 Identities=15% Similarity=0.258 Sum_probs=61.6
Q ss_pred EEEEcCcChHHHHHHhccCCCCeeEEEEEeecC-CcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 020306 191 VIPILRAGLVLVEHASSILPAIKTYHLGISRDE-ETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269 (328)
Q Consensus 191 iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~-~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~G 269 (328)
++++-.+|+++...+...+ +.+. +-+.+.. .......+ ..+++ |++|+||||+++||+|+.+++++|++.|
T Consensus 60 Vvg~~~gGi~~A~~~a~~l-~~p~--~~~rK~~k~~g~~~~~----~g~~~-g~~VlIVDDvi~TG~T~~~~~~~l~~~G 131 (170)
T PRK13811 60 VAGVAVGGVPLAVAVSLAA-GKPY--AIIRKEAKDHGKAGLI----IGDVK-GKRVLLVEDVTTSGGSALYGIEQLRAAG 131 (170)
T ss_pred EEecCcCcHHHHHHHHHHH-CCCE--EEEecCCCCCCCcceE----EcccC-CCEEEEEEecccccHHHHHHHHHHHHCC
Confidence 5666677888877776544 2332 2222221 11111111 13455 8999999999999999999999999999
Q ss_pred CCcccEEEEEEeeChhH-HHHHHHhCCCcEEEEe
Q 020306 270 VENKQIKVISAVAAPPA-LQKLSENFHGLHVYTG 302 (328)
Q Consensus 270 a~~~~I~vv~~vas~~G-i~~L~~~fP~v~Ivta 302 (328)
+++..+.++ +.-.+| .+++.+ + ++++.+.
T Consensus 132 a~v~~~~~~--vdr~~g~~~~l~~-~-gv~~~sl 161 (170)
T PRK13811 132 AVVDDVVTV--VDREQGAEELLAE-L-GITLTPL 161 (170)
T ss_pred CeEEEEEEE--EECCccHHHHHHh-c-CCcEEEE
Confidence 976554443 443444 555543 2 5555543
No 49
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=80.18 Aligned_cols=66 Identities=26% Similarity=0.322 Sum_probs=58.7
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeEeCCC
Q 020306 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGIIDPT 307 (328)
Q Consensus 237 ~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~IvtaaID~~ 307 (328)
.+++ +++||||||-+|||.||.+|++.++++|+ ++|++++.|+.++..+.+..+ -..||+......
T Consensus 120 ~~~~-g~~VIlVDDGiATGatm~aAi~~~r~~~~--~~IviAVPV~p~~a~~~l~s~--~D~vvc~~~P~~ 185 (220)
T COG1926 120 PSLK-GRTVILVDDGIATGATMKAAVRALRAKGP--KEIVIAVPVAPEDAAAELESE--ADEVVCLYMPAP 185 (220)
T ss_pred CCCC-CCEEEEEeCCcchhHHHHHHHHHHHhcCC--ceEEEEcccCCHHHHHHHHhh--cCeEEEEcCCcc
Confidence 3565 89999999999999999999999999997 689999999999999999987 478888877653
No 50
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.35 E-value=4.3e-06 Score=75.67 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=44.3
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEE
Q 020306 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVY 300 (328)
Q Consensus 239 I~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Iv 300 (328)
+.+|++|+||||+++||+|+.++++++++.|+....+.++.-.....|.+++.+.+ +++++
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~-gv~v~ 171 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQT-GINVK 171 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhcc-CCcEE
Confidence 33599999999999999999999999999998544433333333346788885543 45544
No 51
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=98.33 E-value=5e-06 Score=75.40 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEe
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivta 302 (328)
.+.+|++|+||||+++||+|+.++++++++.|+.+..+.++.--. ..|.+++.+. +++++..
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~-~g~~~~l~~~--gi~~~sl 179 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDRE-EGAEENLKEA--DVELVPL 179 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECC-cChHHHHHHc--CCcEEEE
Confidence 444699999999999999999999999999998665554444433 3556777543 5666544
No 52
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.32 E-value=3.1e-06 Score=76.63 Aligned_cols=88 Identities=13% Similarity=0.246 Sum_probs=60.7
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~G 269 (328)
+++++.++|+++...+.+.+. .+. +...+...+ ... .-+..+.+|++|+||||+++||+|+.++++.|++.|
T Consensus 61 ~Ivgi~~gGi~~A~~la~~L~-~~~--i~~~k~~~~--~~~---~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~G 132 (187)
T TIGR01367 61 FIVGPAMGGVILGYEVARQLS-VRS--IFAEREGGG--MKL---RRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQG 132 (187)
T ss_pred EEEEEccCcHHHHHHHHHHhC-CCe--EEEEEeCCc--EEE---eecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcC
Confidence 478999999999988876542 332 223333221 111 111133458999999999999999999999999999
Q ss_pred CCcccEEEEEEeeChhHH
Q 020306 270 VENKQIKVISAVAAPPAL 287 (328)
Q Consensus 270 a~~~~I~vv~~vas~~Gi 287 (328)
++ .+.+++++.-.+|.
T Consensus 133 a~--vv~~~vlid~~~~~ 148 (187)
T TIGR01367 133 GQ--VVGLACIIDRSQGG 148 (187)
T ss_pred Ce--EEEEEEEEECcCCC
Confidence 84 46666667655554
No 53
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.25 E-value=7.8e-06 Score=75.24 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=59.7
Q ss_pred EEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCc--ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHc
Q 020306 191 VIPILRAGLVLVEHASSILPAIKTYHLGISRDEET--LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKEC 268 (328)
Q Consensus 191 iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t--~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~ 268 (328)
++.+--+|+++...+...+ +.+.. +.|-+.. ++...+. +.+.+.+|++|+||||+++||+|+.++++.|++.
T Consensus 71 IvG~~~~Gi~~A~~vA~~l-~~p~~---~~RK~~K~~G~~~~~~--~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~ 144 (206)
T PRK13809 71 LCGVPYTALTLATSISLKY-NIPMV---LRRKELKNVDPSDAIK--VEGLFTPGQTCLVINDMVSSGKSIIETAVALEEE 144 (206)
T ss_pred EEEecCccHHHHHHHHHHh-CCCEE---EEeCCCCCCCCcCEEE--EccccCCCCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 4555566888877665533 22222 2222111 1111111 1223445899999999999999999999999999
Q ss_pred CCCcccEEEEEEeeC-hhHHHHHHHhCCCcEEEEe
Q 020306 269 GVENKQIKVISAVAA-PPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 269 Ga~~~~I~vv~~vas-~~Gi~~L~~~fP~v~Ivta 302 (328)
|+.+.. +++++.- ..|.+++.+. ++++++.
T Consensus 145 G~~vv~--v~vlvdr~~~~~~~l~~~--gi~v~sl 175 (206)
T PRK13809 145 GLVVRE--ALVFLDRQKGACQPLGPQ--GIKLSSV 175 (206)
T ss_pred CCEEEE--EEEEEECcccHHHHHHhc--CCCEEEE
Confidence 985433 3333332 3566777553 4554443
No 54
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.24 E-value=6.5e-06 Score=75.14 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=56.5
Q ss_pred eEEEEcCcChHHHHHHhccCCCCeeEE--EEEeecCCcc--cceeeecCCCCC-CCCCCEEEEEcCcccchHHHHHHHHH
Q 020306 190 AVIPILRAGLVLVEHASSILPAIKTYH--LGISRDEETL--QPSIYLNKLPEK-FPEGSRIFVVDPMLATGGTVVAALNL 264 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP~a~~g~--I~i~Rd~~t~--e~~~yy~kLP~d-I~~g~~VlLvDd~LATGgTl~aai~~ 264 (328)
+++.|.|+|+...+-++..+--.++.. +..|.+..+. ++.+. ..++-+ +. |++||||||+..||.||..|.+.
T Consensus 32 vIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~-~~~~~d~l~-GkkVLIVDDI~DTG~Tl~~a~~~ 109 (192)
T COG2236 32 VIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVK-YPITIDPLS-GKKVLIVDDIVDTGETLELALEE 109 (192)
T ss_pred EEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceee-cCccccccC-CCeEEEEecccCchHhHHHHHHH
Confidence 589999999999999988764334444 3445544432 22222 233444 55 99999999999999999999999
Q ss_pred HHHcC
Q 020306 265 VKECG 269 (328)
Q Consensus 265 L~~~G 269 (328)
|++..
T Consensus 110 l~~~~ 114 (192)
T COG2236 110 LKKLA 114 (192)
T ss_pred HHhhC
Confidence 99944
No 55
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.22 E-value=6.8e-06 Score=73.60 Aligned_cols=45 Identities=31% Similarity=0.477 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChh
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPP 285 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~ 285 (328)
.+. |++|+||||+++||+|+.+++++|++.|+. .+.+++++.-.+
T Consensus 117 ~~~-gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~--~V~~~~v~~~~~ 161 (178)
T PRK07322 117 KLK-GKRVAIVDDVVSTGGTLTALERLVERAGGQ--VVAKAAIFAEGD 161 (178)
T ss_pred ccC-CCEEEEEeccccccHHHHHHHHHHHHcCCE--EEEEEEEEEcCC
Confidence 354 899999999999999999999999999984 455555555333
No 56
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.21 E-value=7.4e-06 Score=72.13 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=57.4
Q ss_pred eeEEEEcCcChHHHHHHhccC--CCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHH
Q 020306 189 VAVIPILRAGLVLVEHASSIL--PAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVK 266 (328)
Q Consensus 189 i~iVsILRaGl~m~~~lr~~l--P~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~ 266 (328)
.++|.++|+|+.+...+.+.+ |....-.+.-|.++.+.+..+.. -+ .. +|++||||||+++||+|+.++.+.++
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~--~~-~~-~gk~VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLK--RA-EG-DGEGFLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEec--CC-Cc-CcCEEEEEeeeeCCHHHHHHHHHHHh
Confidence 358999999999988887655 32222223334433333333222 12 34 48999999999999999999999986
Q ss_pred HcCCCcccEEEEEEeeChhH
Q 020306 267 ECGVENKQIKVISAVAAPPA 286 (328)
Q Consensus 267 ~~Ga~~~~I~vv~~vas~~G 286 (328)
+ +.+++++..+.+
T Consensus 109 ~-------v~~a~l~~K~~~ 121 (156)
T PRK09177 109 K-------AHFATVYAKPAG 121 (156)
T ss_pred h-------CCEEEEEECcCC
Confidence 4 456666655544
No 57
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=97.99 E-value=1.3e-05 Score=76.60 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=40.7
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHH
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLS 291 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~ 291 (328)
.+.+|++|+||||+++||+|+.++++++++.|+.+.. +++++...+|-+++.
T Consensus 190 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvG--v~vlve~~~~~~~l~ 241 (268)
T TIGR01743 190 SLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAG--IGVLIDNEGVDEKLV 241 (268)
T ss_pred hCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEE--EEEEEECCCChHHcC
Confidence 4556999999999999999999999999999985433 344455556666654
No 58
>PRK09213 pur operon repressor; Provisional
Probab=97.91 E-value=1.6e-05 Score=76.08 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=40.3
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHH
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLS 291 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~ 291 (328)
.+.+|++|+||||+++||+|+.++++++++.|+.+..+ ++++...+|-+++.
T Consensus 192 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv--~vlVd~~~~~~~l~ 243 (271)
T PRK09213 192 SLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGI--GVLVETKEPEERLV 243 (271)
T ss_pred hcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEE--EEEEECCCChhhcC
Confidence 45569999999999999999999999999999865444 34444445655553
No 59
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.88 E-value=9.7e-05 Score=75.86 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=62.0
Q ss_pred EEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCc-ccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcC
Q 020306 191 VIPILRAGLVLVEHASSILPAIKTYHLGISRDEET-LQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269 (328)
Q Consensus 191 iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t-~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~G 269 (328)
++.+--+|+++...+...+ +.+. +-.++...+ ++.... -+.+.+|++|+||||+++||+|+.++++.|++.|
T Consensus 348 I~Gia~gGiPlAt~lA~~l-g~p~--v~vRKe~K~~G~~~~i----eG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG 420 (477)
T PRK05500 348 IAGIPYGSLPTATGLALHL-HHPM--IFPRKEVKAHGTRRLI----EGNFHPGETVVVVDDILITGKSVMEGAEKLKSAG 420 (477)
T ss_pred EEEEccchHHHHHHHHHHh-CCCE--EEEecCcCccCCCceE----ecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 5555667777766665433 2222 222332111 111111 1345569999999999999999999999999999
Q ss_pred CCcccEEEEEEeeChhHHHHHHHhCCCcEEEEe
Q 020306 270 VENKQIKVISAVAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 270 a~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivta 302 (328)
+.+..+.++.-... .|.+++.+. ++++++.
T Consensus 421 ~~V~~v~vlVDR~~-g~~~~L~~~--gv~~~Sl 450 (477)
T PRK05500 421 LNVRDIVVFIDHEQ-GVKDKLQSH--GYQAYSV 450 (477)
T ss_pred CEEEEEEEEEECCc-chHHHHHhc--CCCEEEE
Confidence 87655544444332 456677543 4555544
No 60
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=97.86 E-value=2.3e-05 Score=70.53 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
.+. +++|+||||+++||.|+.++.+.|++.|+. .|.++++
T Consensus 149 ~~~-~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~--~V~~~~l 188 (190)
T TIGR00201 149 SFQ-GRNIVLVDDVVTTGATLHEIARLLLELGAA--SVQVWTL 188 (190)
T ss_pred CCC-CCEEEEEeeeeccHHHHHHHHHHHHHcCCC--EEEEEEE
Confidence 355 799999999999999999999999999984 5666554
No 61
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.84 E-value=6.8e-05 Score=76.81 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=37.1
Q ss_pred cCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 233 NKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 233 ~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
..++..++ |++|+||||+++||+|+.++++.|++.|++ +|++++.
T Consensus 345 ~~~~~~v~-gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk--~V~~~~~ 389 (469)
T PRK05793 345 NPLKVNVE-GKRVVLIDDSIVRGTTSKRLVELLRKAGAK--EVHFRVS 389 (469)
T ss_pred ccCccccC-CCEEEEEccccCchHHHHHHHHHHHHcCCC--EEEEEEE
Confidence 33445676 899999999999999999999999999985 4555554
No 62
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.80 E-value=5.8e-05 Score=69.42 Aligned_cols=57 Identities=23% Similarity=0.553 Sum_probs=45.4
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEE
Q 020306 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVY 300 (328)
Q Consensus 241 ~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Iv 300 (328)
+|++|+||||+++||+|+..|+++|++.|+.+ ..+++++.-.+|.+...+++ +++++
T Consensus 111 ~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V--~gv~~ivDR~~~~~~~~~~~-g~~~~ 167 (201)
T COG0461 111 KGEKVVVVEDVITTGGSILEAVEALREAGAEV--VGVAVIVDRQSGAKEVLKEY-GVKLV 167 (201)
T ss_pred CCCEEEEEEecccCCHhHHHHHHHHHHcCCeE--EEEEEEEecchhHHHHHHhc-CCceE
Confidence 59999999999999999999999999999854 34566667667877776654 44433
No 63
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=97.75 E-value=9.4e-05 Score=75.30 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE--eeChhHHHHHHHhCCCcEEEEe
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA--VAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~--vas~~Gi~~L~~~fP~v~Ivta 302 (328)
+..++ |++|+||||+++||+|+.++++.|++.|++ +|++++. +........+... +.-++++.
T Consensus 335 ~~~v~-gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~--~V~v~~~hp~~~~~~~~~i~~~-~~~~li~~ 399 (445)
T PRK08525 335 SKVLE-GKRIVVIDDSIVRGTTSKKIVSLLRAAGAK--EIHLRIACPEIKFPCYYGIDTP-TFEELISA 399 (445)
T ss_pred ccccC-CCeEEEEecccCcHHHHHHHHHHHHhcCCC--EEEEEEECCCcCCchhhhCcCC-ChhhEEEc
Confidence 33466 899999999999999999999999999985 5665555 6666777777432 22335444
No 64
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00011 Score=66.34 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=63.3
Q ss_pred eEEEEcCcChHHHHHHhccCC-CCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHc
Q 020306 190 AVIPILRAGLVLVEHASSILP-AIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKEC 268 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~lP-~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~ 268 (328)
+++.|--+|.|++.-....+. +..+|+=.-.|.++.....-.+.+=-..+. ||+++|+||+++||.|+..+++.|++.
T Consensus 89 vVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~-gK~cvIVDDvittG~Ti~E~Ie~lke~ 167 (203)
T COG0856 89 VVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVE-GKRCVIVDDVITTGSTIKETIEQLKEE 167 (203)
T ss_pred EEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeeccccccc-CceEEEEecccccChhHHHHHHHHHHc
Confidence 367777888888766655442 223333111121111110111111113465 899999999999999999999999999
Q ss_pred CCCcccEEEEEEeeChhHHHHHH
Q 020306 269 GVENKQIKVISAVAAPPALQKLS 291 (328)
Q Consensus 269 Ga~~~~I~vv~~vas~~Gi~~L~ 291 (328)
|+++ +++++++.+.|+..+.
T Consensus 168 g~kp---v~v~VL~dK~G~dei~ 187 (203)
T COG0856 168 GGKP---VLVVVLADKKGVDEIE 187 (203)
T ss_pred CCCc---EEEEEEEccCCccccc
Confidence 9864 4677788899988775
No 65
>PLN02440 amidophosphoribosyltransferase
Probab=97.67 E-value=0.00016 Score=74.35 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=53.7
Q ss_pred eEEEEcCcChHHHHHHhccC--CCCeeEEEE--Ee-ec-------CCcccceeeecCCCCCCCCCCEEEEEcCcccchHH
Q 020306 190 AVIPILRAGLVLVEHASSIL--PAIKTYHLG--IS-RD-------EETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGT 257 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~l--P~a~~g~I~--i~-Rd-------~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgT 257 (328)
++|++..+|..++.++.+.+ |- ..+.+- +. |. ..+......+......++ |++|+||||+++||.|
T Consensus 278 ~vvpVP~s~~~~A~~la~~lgiP~-~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~-gk~VlLVDDiittGtT 355 (479)
T PLN02440 278 VVIPVPDSGRVAALGYAAKLGVPF-QQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLE-GKRVVVVDDSIVRGTT 355 (479)
T ss_pred EEEEeCCcHHHHHHHHHHHhCCCc-hhheEEEeeccccccCcchhhhhhhheeeeeccccccc-CceEEEEeceeCcHHH
Confidence 36788888888877776643 32 111111 10 00 011112222221223465 8999999999999999
Q ss_pred HHHHHHHHHHcCCCcccEEEEEE
Q 020306 258 VVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 258 l~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
+.++++.|++.|++ +|.+++.
T Consensus 356 l~~i~~~L~~aGa~--~V~v~v~ 376 (479)
T PLN02440 356 SSKIVRMLREAGAK--EVHMRIA 376 (479)
T ss_pred HHHHHHHHHhcCCC--EEEEEEE
Confidence 99999999999985 5555554
No 66
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.0002 Score=64.55 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCeeEEEEcCcChHHHHHHhccCCC--------CeeEEEEE--e-ecCCcccceeeecCCCCCCCCCCEEEEEcCcccch
Q 020306 187 EPVAVIPILRAGLVLVEHASSILPA--------IKTYHLGI--S-RDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATG 255 (328)
Q Consensus 187 ~~i~iVsILRaGl~m~~~lr~~lP~--------a~~g~I~i--~-Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATG 255 (328)
.+|.++.+|.+|--|...+.+.+-+ ..+.+|.+ | .+..+++....-......+. ||+|+||||++.||
T Consensus 60 ~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt-gK~VliVeDIvdTG 138 (216)
T KOG3367|consen 60 KPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT-GKNVLIVEDIVDTG 138 (216)
T ss_pred CceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc-CCcEEEEEeecccc
Confidence 4688899999998876666543222 34556554 3 34555665555455556777 89999999999999
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEEEeeCh
Q 020306 256 GTVVAALNLVKECGVENKQIKVISAVAAP 284 (328)
Q Consensus 256 gTl~aai~~L~~~Ga~~~~I~vv~~vas~ 284 (328)
.||...+..+++.++ +.+.+++++..+
T Consensus 139 rTl~~Lls~~~~~k~--~~v~vasLL~Kr 165 (216)
T KOG3367|consen 139 RTLSTLLSHMKAYKP--SMVKVASLLVKR 165 (216)
T ss_pred chHHHHHHHHHhcCc--cceeeeeecccc
Confidence 999999999999997 578888876543
No 67
>PRK11595 DNA utilization protein GntX; Provisional
Probab=97.66 E-value=8.4e-05 Score=68.91 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 237 ~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
.++. +++|+||||+++||.|+.++.+.|++.|+. .|.++++
T Consensus 183 ~~~~-~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~--~V~~~~l 223 (227)
T PRK11595 183 LPVQ-GQHMAIVDDVVTTGSTVAEIAQLLLRNGAA--SVQVWCL 223 (227)
T ss_pred CCCC-CCEEEEEeeeecchHHHHHHHHHHHHcCCc--EEEEEEE
Confidence 3465 899999999999999999999999999974 6666665
No 68
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=97.63 E-value=0.0001 Score=68.68 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=37.0
Q ss_pred CCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEee
Q 020306 235 LPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVA 282 (328)
Q Consensus 235 LP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~va 282 (328)
+++.+...++|+||||+++||.|+..+.++|++.|+ ++|.+.++.-
T Consensus 177 ~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga--~~v~~~~lar 222 (225)
T COG1040 177 LKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGA--KRVFVLTLAR 222 (225)
T ss_pred cCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCC--ceEEEEEEEe
Confidence 344454238999999999999999999999999997 4677766643
No 69
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=97.62 E-value=0.00025 Score=72.90 Aligned_cols=86 Identities=16% Similarity=0.258 Sum_probs=55.1
Q ss_pred eEEEEcCcChHHHHHHhccC--CCCeeEEEE--E-eec-------CCcccceeeecCCCCCCCCCCEEEEEcCcccchHH
Q 020306 190 AVIPILRAGLVLVEHASSIL--PAIKTYHLG--I-SRD-------EETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGT 257 (328)
Q Consensus 190 ~iVsILRaGl~m~~~lr~~l--P~a~~g~I~--i-~Rd-------~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgT 257 (328)
++|+|..+|++++.++.+.+ |- ..+.+- + +|. ..+......+......++ |++|+||||+++||.|
T Consensus 298 ~Vv~VP~sg~~~A~~la~~lgip~-~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~-gk~vvlvDD~i~tG~T 375 (479)
T PRK09123 298 VVVPVPDSGVPAAIGYAQESGIPF-ELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIE-GKRVVLVDDSIVRGTT 375 (479)
T ss_pred EEEEcCccHHHHHHHHHHhcCCCe-eheEEEEeecCccccccccccccccEEEEecccccccC-CCEEEEEeceeCchHH
Confidence 47888888888888887643 32 122211 1 010 011112222222233455 8999999999999999
Q ss_pred HHHHHHHHHHcCCCcccEEEEE
Q 020306 258 VVAALNLVKECGVENKQIKVIS 279 (328)
Q Consensus 258 l~aai~~L~~~Ga~~~~I~vv~ 279 (328)
+.++++.|++.|++ +|++++
T Consensus 376 l~~~~~~l~~~Ga~--~v~~~~ 395 (479)
T PRK09123 376 SRKIVQMLRDAGAK--EVHLRI 395 (479)
T ss_pred HHHHHHHHHHcCCC--EEEEEE
Confidence 99999999999985 566655
No 70
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.52 E-value=0.0003 Score=71.72 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=35.1
Q ss_pred CCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEE
Q 020306 235 LPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVIS 279 (328)
Q Consensus 235 LP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~ 279 (328)
+...++ |++|+||||++.||+|+.++++.|++.|++ +|.+.+
T Consensus 328 ~~~~v~-gk~VlLVDD~IttGtTl~~~~~~L~~aGAk--~V~~~~ 369 (442)
T PRK08341 328 VREVIN-GKRVVLVDDSIVRGTTMKRIVKMLRDAGAR--EVHVRI 369 (442)
T ss_pred cccccC-CCEEEEEeeeeccHHHHHHHHHHHHhcCCc--EEEEEE
Confidence 344565 899999999999999999999999999995 454443
No 71
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=97.49 E-value=0.00029 Score=72.78 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
...+. |++|+||||+++||.|+.++++.|++.|++ +|++++.
T Consensus 353 ~~~v~-gK~VlLVDDvitTGaTl~~~~~~L~~aGA~--~V~v~v~ 394 (501)
T PRK09246 353 RAEFK-GKNVLLVDDSIVRGTTSEQIVQMAREAGAK--KVYFASA 394 (501)
T ss_pred ccccc-CCeEEEEeccccccHHHHHHHHHHHHcCCC--EEEEEEE
Confidence 44566 899999999999999999999999999985 6666655
No 72
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=97.38 E-value=0.00019 Score=74.13 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCc
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~ 272 (328)
...++ |++|+||||+++||.|+.++++.|++.|+++
T Consensus 372 ~~~~~-gkrVlLVDDvIttGtTl~~~~~~Lr~aGAke 407 (500)
T PRK07349 372 KDVLA-GKRIIIVDDSIVRGTTSRKIVKALRDAGATE 407 (500)
T ss_pred ccccC-CCEEEEEeceeCCcHHHHHHHHHHHHhCCeE
Confidence 44555 8999999999999999999999999999964
No 73
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=97.15 E-value=0.00034 Score=71.91 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCccc
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQ 274 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~ 274 (328)
...++ |++|+||||++.||.|+.+++++|++.|+++..
T Consensus 351 ~~~i~-gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~ 388 (474)
T PRK06388 351 REVIS-GKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVH 388 (474)
T ss_pred ccccc-CceEEEEeCeECcHHHHHHHHHHHHHcCCCEEE
Confidence 33455 899999999999999999999999999986433
No 74
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=97.05 E-value=0.00051 Score=71.21 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCc
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~ 272 (328)
...++ |++||||||.++||.|+.++++.|++.|++.
T Consensus 362 ~~~~~-gk~vllVDD~ittG~T~~~~~~~L~~~ga~~ 397 (510)
T PRK07847 362 REVIR-GKRLVVVDDSIVRGNTQRALVRMLREAGAAE 397 (510)
T ss_pred ccccC-CCEEEEEecccCchHHHHHHHHHHHHcCCCE
Confidence 44455 8999999999999999999999999999853
No 75
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=97.05 E-value=0.00018 Score=73.89 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCc
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~ 272 (328)
...++ |++|+||||++.||.|+.+++++|++.||++
T Consensus 343 ~~~i~-gk~VlLVDDvittGtTl~~~~~~Lk~aGA~e 378 (471)
T PRK06781 343 RGVVE-GKRVVMIDDSIVRGTTSKRIVRMLREAGATE 378 (471)
T ss_pred ccccC-CceEEEEeceeccchHHHHHHHHHHHcCCcE
Confidence 44565 8999999999999999999999999999964
No 76
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=96.98 E-value=0.0012 Score=68.05 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=35.8
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
...++ |++|+||||+++||.|+.++++.|++.|++ .|.+++.
T Consensus 345 ~~~~~-gk~vllVDDvittG~T~~~~~~~L~~~Ga~--~v~~~~~ 386 (484)
T PRK07272 345 SGVVK-GKRVVMVDDSIVRGTTSRRIVQLLKEAGAK--EVHVAIA 386 (484)
T ss_pred ccccC-CCEEEEEccccCchHHHHHHHHHHHhcCCc--EEEEEEe
Confidence 34565 899999999999999999999999999995 4655555
No 77
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=96.83 E-value=0.0013 Score=66.92 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEE
Q 020306 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVIS 279 (328)
Q Consensus 237 ~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~ 279 (328)
..++ |++|+||||+++||.|+.++++.|++.|++ .|.+++
T Consensus 334 ~~~~-gk~v~lvDD~ittG~T~~~~~~~l~~~ga~--~v~~~~ 373 (442)
T TIGR01134 334 EVFR-GKRVVLVDDSIVRGTTSRQIVKMLRDAGAK--EVHVRI 373 (442)
T ss_pred ccCC-CCEEEEEeccccccHHHHHHHHHHHHcCCc--EEEEEE
Confidence 3455 899999999999999999999999999985 454433
No 78
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=96.82 E-value=0.0013 Score=67.56 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCc
Q 020306 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVEN 272 (328)
Q Consensus 236 P~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~ 272 (328)
...++ |++|+||||++.||.|+.++++.|++.||++
T Consensus 343 ~~~v~-gk~VlLVDDsittGtTl~~~~~~L~~aGA~e 378 (475)
T PRK07631 343 RGVVE-GKRVVMVDDSIVRGTTSRRIVTMLREAGATE 378 (475)
T ss_pred ccccC-CceEEEEeeeeccHHHHHHHHHHHHHcCCCE
Confidence 34555 8999999999999999999999999999964
No 79
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.47 E-value=0.013 Score=53.71 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhH-----HHHHHHhCCCcEEEEe
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPA-----LQKLSENFHGLHVYTG 302 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~G-----i~~L~~~fP~v~Ivta 302 (328)
.+...+.++||||-++||.|++..++.|++.-. .+++++++++.-..+ .+.+.++.+ ++|-+.
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~~~~~~~~~~~~~lg-i~i~~v 184 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSEEDRARFEALAEELG-IPIDVV 184 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCHHHHHHHHHHHHHcC-CcEEEE
Confidence 344468999999999999999999999998854 689999999776432 345666663 444433
No 80
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0025 Score=64.84 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcceeeecCC-ccee-eeeecCCCCeeEEEEcCcChHHHHHHhccCCCCeeEE--EE
Q 020306 143 IFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM-GVAS-VEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYH--LG 218 (328)
Q Consensus 143 ~Fr~~i~rL~rlL~eEal~~~Lp~~~~~V~TP~-G~~~-~~~i~~~~~i~iVsILRaGl~m~~~lr~~lP~a~~g~--I~ 218 (328)
..-.+=.++|+.|++|+-.+ .++.|..|+ |... .++ + -.+|.++.+++-| +--+|. |.
T Consensus 264 sVy~~R~~mG~~La~e~~~e----aDvVipVPDSg~~aAig~---A--------~~sGiPy~~GliK---NrYvgRTFI~ 325 (470)
T COG0034 264 SVYEARKRMGEKLAEEIPVE----ADVVIPVPDSGRPAAIGY---A--------RASGIPYEEGLIK---NRYVGRTFIM 325 (470)
T ss_pred eHHHHHHHHHHHHHHhCCcc----ccEEEecCCCChHHHHHH---H--------HHhCCchhhcccc---ccccceeeeC
Confidence 33444568999999886443 145566666 2221 111 0 1345666666544 211221 11
Q ss_pred EeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEE
Q 020306 219 ISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIK 276 (328)
Q Consensus 219 i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~ 276 (328)
-.....+..+.+-.+-+...++ ||+|+||||-|-.|.|....+++|++.||++..+.
T Consensus 326 P~q~~R~~~Vr~KLnpvr~~v~-GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvr 382 (470)
T COG0034 326 PTQELREKGVRLKLNPVREVVK-GKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVR 382 (470)
T ss_pred CcHHHHHhhhhhhcCchHHHhC-CCeEEEEccccccCccHHHHHHHHHHhCCCEEEEE
Confidence 1111111112222233444566 99999999999999999999999999999653333
No 81
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0095 Score=56.54 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=108.1
Q ss_pred eCCchhHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHhccCCC-Ccceeee--cCCcceeeeeecCCCCeeEEEEcCc
Q 020306 121 VPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLP-TVSGEIQ--SPMGVASVEFIDPREPVAVIPILRA 197 (328)
Q Consensus 121 v~~~P~i~~lltiLRD~~T~~~~Fr~~i~rL~rlL~eEal~~~Lp-~~~~~V~--TP~G~~~~~~i~~~~~i~iVsILRa 197 (328)
-.+.-.+|+||+++.|..-..+-|-+|+.+ + .| |.+..|. +|.-.. . ++. .+..||-
T Consensus 132 dlhqkeiqgff~~pvdnlraspfllqyiqe-----------~-ipdyrnavivaksp~~ak---k---a~s--yaerlrl 191 (354)
T KOG1503|consen 132 DLHQKEIQGFFSIPVDNLRASPFLLQYIQE-----------E-IPDYRNAVIVAKSPGVAK---K---AQS--YAERLRL 191 (354)
T ss_pred hhhhHhhcceecccccccccCHHHHHHHHH-----------h-CccccceEEEecCcchhh---H---HHh--HHHHHhh
Confidence 446677999999999999888888888776 2 44 5555443 342111 0 011 2233555
Q ss_pred ChHHHHHHhcc----------CCC-CeeEE----EEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHH
Q 020306 198 GLVLVEHASSI----------LPA-IKTYH----LGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAAL 262 (328)
Q Consensus 198 Gl~m~~~lr~~----------lP~-a~~g~----I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai 262 (328)
|++..++-.+- .|. ..... +++--.....+|- ..+-+|+. |+-.++|||++..-.+..+|.
T Consensus 192 glavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kpp---ltvvgdvg-griaimvddiiddvqsfvaaa 267 (354)
T KOG1503|consen 192 GLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPP---LTVVGDVG-GRIAIMVDDIIDDVQSFVAAA 267 (354)
T ss_pred ceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCC---eEEEeccC-ceEEEEehhhHHhHHHHHHHH
Confidence 55544433221 111 11100 0000000000000 01124776 899999999999999999999
Q ss_pred HHHHHcCCCcccEEEEEE--eeChhHHHHHHHhCC-CcEEEEeEeCCCCCCCC-------ccccCcccHhHhhhC
Q 020306 263 NLVKECGVENKQIKVISA--VAAPPALQKLSENFH-GLHVYTGIIDPTVNDKG-------FIVPGLGDAGDRSFG 327 (328)
Q Consensus 263 ~~L~~~Ga~~~~I~vv~~--vas~~Gi~~L~~~fP-~v~IvtaaID~~Lde~g-------yIvPGLGDaGDR~fG 327 (328)
+.||++|+ -+|++++. +-+.++=..+.+. | +..|+|.+|.-++.+-. -|.=-+.+|+.|+|+
T Consensus 268 e~lkerga--ykiyv~athgllssdapr~lees-~idevvvtntvphevqklqc~kiktvdislii~eairrihn 339 (354)
T KOG1503|consen 268 EVLKERGA--YKIYVMATHGLLSSDAPRLLEES-PIDEVVVTNTVPHEVQKLQCHKIKTVDISLIISEAIRRIHN 339 (354)
T ss_pred HHHHhcCc--eEEEEEeecccccccchhhhhcC-CCceEEEecCCcHHHHhhcCCccceeehhhHHHHHHHHHhC
Confidence 99999998 47888887 6666766666554 6 78899999987644321 233336678888775
No 82
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.006 Score=61.07 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=53.4
Q ss_pred CcChHHHHHHhccCCCCeeE--EEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcc
Q 020306 196 RAGLVLVEHASSILPAIKTY--HLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENK 273 (328)
Q Consensus 196 RaGl~m~~~lr~~lP~a~~g--~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~ 273 (328)
.+|+++.+++.+ +--+| +|.-........+..-+.-+++.+. ||+|+||||-|--|.|....+++|+|.||++.
T Consensus 312 ~sG~py~e~l~r---nrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~-GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeV 387 (474)
T KOG0572|consen 312 KSGLPYQEVLIR---NRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFE-GKRVVLVDDSIVRGTTSSPIVKMLREAGAKEV 387 (474)
T ss_pred HhCCchhhhhhh---cccccceecCccHHHHHhhhhhhcccchhhcC-CceEEEEecceeccCchHHHHHHHHHcCCcEE
Confidence 468888888755 21122 2221111111222333455677887 99999999999999999999999999999765
Q ss_pred cEEEEE
Q 020306 274 QIKVIS 279 (328)
Q Consensus 274 ~I~vv~ 279 (328)
.+.+++
T Consensus 388 h~riAs 393 (474)
T KOG0572|consen 388 HIRIAS 393 (474)
T ss_pred EEEecC
Confidence 555443
No 83
>PF15610 PRTase_3: PRTase ComF-like
Probab=75.79 E-value=4.8 Score=38.96 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEE
Q 020306 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278 (328)
Q Consensus 241 ~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv 278 (328)
+|+.||++||+.-||++-.+..+.+++.|++- .++++
T Consensus 137 ~gk~lIflDDIkITGshE~~V~~~~~~~~~~~-~~~yl 173 (274)
T PF15610_consen 137 SGKHLIFLDDIKITGSHEDKVRKILKEYGLEN-DFIYL 173 (274)
T ss_pred CCcEEEEeccEEecCcHHHHHHHHHHHcCccc-cEEEE
Confidence 49999999999999999999999999999853 44443
No 84
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=57.20 E-value=45 Score=28.07 Aligned_cols=58 Identities=24% Similarity=0.509 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeEe
Q 020306 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGII 304 (328)
Q Consensus 238 dI~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~IvtaaI 304 (328)
+++ +++|+|+ .+|++..+++..|.+.|+ ++|.++. =+.+-.+.+.+.|++..+-....
T Consensus 9 ~l~-~~~vlvi----GaGg~ar~v~~~L~~~g~--~~i~i~n--Rt~~ra~~l~~~~~~~~~~~~~~ 66 (135)
T PF01488_consen 9 DLK-GKRVLVI----GAGGAARAVAAALAALGA--KEITIVN--RTPERAEALAEEFGGVNIEAIPL 66 (135)
T ss_dssp TGT-TSEEEEE----SSSHHHHHHHHHHHHTTS--SEEEEEE--SSHHHHHHHHHHHTGCSEEEEEG
T ss_pred CcC-CCEEEEE----CCHHHHHHHHHHHHHcCC--CEEEEEE--CCHHHHHHHHHHcCccccceeeH
Confidence 576 7999985 579999999999999998 4676665 24455677777775444433333
No 85
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=54.70 E-value=39 Score=25.11 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCC
Q 020306 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295 (328)
Q Consensus 239 I~~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP 295 (328)
+.+++.|++++ .+|.....+...|++.|.+ ++.++ ..|++...+.++
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~--~v~~l-----~GG~~~w~~~~~ 99 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFK--NVYLL-----DGGYKEWSAAGP 99 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCC--ceEEe-----cCCHHHHHhcCC
Confidence 33478899988 6788889999999999974 44332 467777766543
No 86
>PLN02469 hydroxyacylglutathione hydrolase
Probab=51.38 E-value=26 Score=33.16 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=38.9
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE---eeChhHHHHHHHhCCCcEEEEeEeC
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA---VAAPPALQKLSENFHGLHVYTGIID 305 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~---vas~~Gi~~L~~~fP~v~IvtaaID 305 (328)
.+.++||||. .....++.+++.|.+.+. ++.. ..=-.|+..|.+.||+++||...-|
T Consensus 22 ~~~~vlIDp~-----~~~~il~~l~~~g~~l~~--Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~ 81 (258)
T PLN02469 22 TKDAAVVDPV-----DPEKVLQAAHEHGAKIKL--VLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD 81 (258)
T ss_pred CCeEEEECCC-----ChHHHHHHHHHcCCcccE--EEecCCCCccccCHHHHHHHCCCCEEEEechh
Confidence 3589999985 345667778888864322 2222 2333688899999999999987654
No 87
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.93 E-value=11 Score=33.17 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=16.7
Q ss_pred EEEEEcCcccchHHHHHHHHH
Q 020306 244 RIFVVDPMLATGGTVVAALNL 264 (328)
Q Consensus 244 ~VlLvDd~LATGgTl~aai~~ 264 (328)
.=+|+||+..+|.|+.+|.++
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHT
T ss_pred ceeeehhhhccChHHHHHHHc
Confidence 346899999999999999874
No 88
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=48.78 E-value=1.6e+02 Score=24.60 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=46.5
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccch-H---HHHHHHHHHHHcCC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATG-G---TVVAALNLVKECGV 270 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATG-g---Tl~aai~~L~~~Ga 270 (328)
..+...+.+++.+.+ +.+.+.+...+-... ..|.++++++. |++|+|+=.+...= . -+.-.++.+++.|+
T Consensus 6 g~~~~~La~~ia~~L-~~~~~~~~~~~F~dG----E~~v~i~~~v~-g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a 79 (116)
T PF13793_consen 6 GSSSQDLAERIAEAL-GIPLGKVETKRFPDG----ETYVRIPESVR-GKDVFIIQSTSPPVNDNLMELLLLIDALRRAGA 79 (116)
T ss_dssp SSSGHHHHHHHHHHT-TS-EE-EEEEE-TTS-----EEEEESS--T-TSEEEEE---SSSHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCHHHHHHHHHHh-CCceeeeEEEEcCCC----CEEEEeccccc-CCceEEEEecCCchhHHHHHHHHHHHHHHHcCC
Confidence 345567778887766 467777777663221 23466788898 89999998888641 2 34556778888998
Q ss_pred CcccEEEEEE
Q 020306 271 ENKQIKVISA 280 (328)
Q Consensus 271 ~~~~I~vv~~ 280 (328)
++|.++..
T Consensus 80 --~~i~~ViP 87 (116)
T PF13793_consen 80 --KRITLVIP 87 (116)
T ss_dssp --SEEEEEES
T ss_pred --cEEEEecc
Confidence 57766654
No 89
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.61 E-value=1.5e+02 Score=29.33 Aligned_cols=86 Identities=10% Similarity=0.208 Sum_probs=58.9
Q ss_pred CCCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-hHH---HHHH
Q 020306 186 REPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-GGT---VVAA 261 (328)
Q Consensus 186 ~~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-GgT---l~aa 261 (328)
.+++.+++ ..+...+.+.+.+.+ +.+.+.+.+.+=.. + ..|.+++.++. |++|+|+-.+-.. ... +...
T Consensus 19 ~~~~~i~~-g~~~~~la~~ia~~l-g~~l~~~~~~~FpD-G---E~~v~i~~~vr-g~~V~ivqs~~~p~nd~l~eLll~ 91 (330)
T PRK02812 19 NNRLRLFS-GSSNPALAQEVARYL-GMDLGPMIRKRFAD-G---ELYVQIQESIR-GCDVYLIQPTCAPVNDHLMELLIM 91 (330)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC-C---CEEEEeCCCCC-CCEEEEECCCCCCccHHHHHHHHH
Confidence 34555555 567778888888755 57788877766322 1 23577888897 8999999986433 222 4567
Q ss_pred HHHHHHcCCCcccEEEEEE
Q 020306 262 LNLVKECGVENKQIKVISA 280 (328)
Q Consensus 262 i~~L~~~Ga~~~~I~vv~~ 280 (328)
++.+++.|+ ++|.++..
T Consensus 92 ~~alr~~ga--~ri~~ViP 108 (330)
T PRK02812 92 VDACRRASA--RQITAVIP 108 (330)
T ss_pred HHHHHHhCC--ceEEEEEe
Confidence 778889998 47777765
No 90
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=40.32 E-value=72 Score=34.18 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEEE---eeChhHHHHHHHhCCCcEEEEeEeCCC
Q 020306 256 GTVVAALNLVKECGVENKQIKVISA---VAAPPALQKLSENFHGLHVYTGIIDPT 307 (328)
Q Consensus 256 gTl~aai~~L~~~Ga~~~~I~vv~~---vas~~Gi~~L~~~fP~v~IvtaaID~~ 307 (328)
.++.++.+.+++.+... .+.+=+. +.+++|++.|.+.||++++++..=..+
T Consensus 377 ~sl~~l~~f~~~l~p~~-~~~~YVPPSNils~eG~e~L~~~~P~ik~IaS~Y~~~ 430 (585)
T PF09960_consen 377 ESLKELKRFVKSLFPNY-EPSSYVPPSNILSEEGREALKKAFPEIKTIASLYFGD 430 (585)
T ss_pred HHHHHHHHHHHHhCCCc-ceEEecCCccccCHHHHHHHHHhCCCeEEEEEeeecC
Confidence 45555666666666421 2211111 789999999999999999888776554
No 91
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=39.94 E-value=64 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeE
Q 020306 256 GTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 256 gTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
.|++..|+-..+.|+....|++=++=.....-++|.+.||.+++.+..
T Consensus 123 dsam~LI~~v~~~gvnvteiyVDTVGpp~~Yq~kLek~FP~~k~tV~k 170 (301)
T KOG2299|consen 123 DSAMGLIDEVLDQGVNVTEIYVDTVGPPAKYQEKLEKRFPGIKFTVTK 170 (301)
T ss_pred HHHHHHHHHHHHhCCceEEEEEecCCChHHHHHHHHhhCCCeEEEEee
Confidence 566677777788998777776665544456677999999999886654
No 92
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.25 E-value=94 Score=29.45 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHHHHcCCCcc-cEEEEEEeeChhHHHHHHH----------hCCCcEEEEeEeCCCCCCCCccccCccc
Q 020306 252 LATGGTVVAALNLVKECGVENK-QIKVISAVAAPPALQKLSE----------NFHGLHVYTGIIDPTVNDKGFIVPGLGD 320 (328)
Q Consensus 252 LATGgTl~aai~~L~~~Ga~~~-~I~vv~~vas~~Gi~~L~~----------~fP~v~IvtaaID~~Lde~gyIvPGLGD 320 (328)
+.||.|+...++.|-+ -.+.+ +|..+ ++...-+.+.+ .++.+.|+...-|+ .|.++.++-|-|-
T Consensus 26 lGTGST~~~fI~~Lg~-~~~~e~~i~~V---~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGADE-vd~~~~lIKGGGg 100 (227)
T COG0120 26 LGTGSTAAYFIEALGR-RVKGELDIGGV---PTSFQTEELARELGIPVSSLNEVDSLDLAIDGADE-VDPNLNLIKGGGG 100 (227)
T ss_pred EcCcHHHHHHHHHHHH-hhccCccEEEE---eCCHHHHHHHHHcCCeecCccccCccceEeecccc-cCCCCCEEccChH
Confidence 6799999999999976 32222 33333 33333333333 23345565555555 4777889999887
Q ss_pred HhHh
Q 020306 321 AGDR 324 (328)
Q Consensus 321 aGDR 324 (328)
|--|
T Consensus 101 Al~r 104 (227)
T COG0120 101 ALLR 104 (227)
T ss_pred HHHH
Confidence 7543
No 93
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=38.09 E-value=1e+02 Score=23.75 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=34.5
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeC---h-----hHHHHHHHhCCCcEEEEeEeCC
Q 020306 244 RIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAA---P-----PALQKLSENFHGLHVYTGIIDP 306 (328)
Q Consensus 244 ~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas---~-----~Gi~~L~~~fP~v~IvtaaID~ 306 (328)
.+.+++|.-.+-.++.++++.+++.-...+.|.++..+.. . ..+.++.+.+.+. |++...++
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~ 82 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNP 82 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCC
Confidence 4555555999999999999999987333233444443322 1 2344555555455 54443333
No 94
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.43 E-value=3.4e+02 Score=26.59 Aligned_cols=83 Identities=12% Similarity=0.243 Sum_probs=54.7
Q ss_pred eeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-h---HHHHHHHHH
Q 020306 189 VAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-G---GTVVAALNL 264 (328)
Q Consensus 189 i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-G---gTl~aai~~ 264 (328)
+.+++ ..+...+.+.+.+.+ +.+.+.+.+.+=.. +| .|.++++++. |++|+|+-.+-.. - --+.-.++.
T Consensus 6 ~~i~~-~~~~~~la~~ia~~l-g~~l~~~~~~~Fpd-GE---~~v~i~~~vr-g~dV~iv~s~~~~~nd~lmelll~~~a 78 (320)
T PRK02269 6 LKLFA-LSSNKELAEKVAQEI-GIELGKSSVRQFSD-GE---IQVNIEESIR-GHHVFILQSTSSPVNDNLMEILIMVDA 78 (320)
T ss_pred eEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC-CC---EEEEECCCCC-CCEEEEEecCCCCccchHHHHHHHHHH
Confidence 44555 566777888887755 56777777766321 11 3467778887 8999999664321 1 235567788
Q ss_pred HHHcCCCcccEEEEEE
Q 020306 265 VKECGVENKQIKVISA 280 (328)
Q Consensus 265 L~~~Ga~~~~I~vv~~ 280 (328)
|++.|+ ++|.++..
T Consensus 79 lr~~~a--~~i~~V~P 92 (320)
T PRK02269 79 LKRASA--ESINVVMP 92 (320)
T ss_pred HHHhCC--CeEEEEEe
Confidence 899998 47777765
No 95
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.63 E-value=1e+02 Score=25.01 Aligned_cols=60 Identities=12% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCC---CcccEEEEEEeeChhHHHHHHHhCCCcEEEEe
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGV---ENKQIKVISAVAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga---~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivta 302 (328)
..+++|+-----|..+-..+++.+.+..- +...|++...++...+ +.+.+.+|.+.+|.+
T Consensus 36 ~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~-~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 36 EADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG-EELKKEFPEVDLVVG 98 (98)
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh-HHHHhhCCCeEEEeC
Confidence 57888888888888888888877765432 1235666666887776 678888999888764
No 96
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.36 E-value=2.5e+02 Score=27.60 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=54.1
Q ss_pred CeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchH----HHHHHHH
Q 020306 188 PVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGG----TVVAALN 263 (328)
Q Consensus 188 ~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGg----Tl~aai~ 263 (328)
++++++ +.+...+.+.+.+.+ +.+.+.++..+=.. +| .|.+++.++. |++|+|+=.+-.... -+.-.++
T Consensus 6 ~~~i~~-g~~~~~La~~ia~~l-g~~l~~~~~~~Fpd-GE---~~v~i~~~v~-g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 6 NLLVFS-GNANKPLAQSICKEL-GVRMGKALVTRFSD-GE---VQVEIEESVR-RQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred ceEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC-CC---EEEEECCCcC-CCeEEEEecCCCCCchHHHHHHHHHH
Confidence 444444 566777888887755 57788877776321 12 3567788887 899999854322211 3445667
Q ss_pred HHHHcCCCcccEEEEEE
Q 020306 264 LVKECGVENKQIKVISA 280 (328)
Q Consensus 264 ~L~~~Ga~~~~I~vv~~ 280 (328)
.|++.|+ ++|.++..
T Consensus 79 alr~~~a--~~i~~ViP 93 (319)
T PRK04923 79 ALKRASA--ASVTAVIP 93 (319)
T ss_pred HHHHcCC--cEEEEEee
Confidence 7888998 47777665
No 97
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.11 E-value=3.4e+02 Score=26.84 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=56.7
Q ss_pred CCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-hHH---HHHHH
Q 020306 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-GGT---VVAAL 262 (328)
Q Consensus 187 ~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-GgT---l~aai 262 (328)
+++.+++ ..+...+.+.+.+.+ +.+.|.+...|=..- | .|.++.+++. |+.|+|+=++-.. ... +...+
T Consensus 8 ~~~~i~~-~~~~~~La~~ia~~l-g~~l~~~~~~~FpdG-E---~~v~i~~~vr-g~dV~ivqs~~~p~nd~l~eLll~~ 80 (332)
T PRK00553 8 SNHVIFS-LSKAKKLVDSICRKL-SMKPGEIVIQKFADG-E---TYIRFDESVR-NKDVVIFQSTCSPVNDSLMELLIAI 80 (332)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCCC-C---EEEEECCCCC-CCEEEEEcCCCCCCchHHHHHHHHH
Confidence 4444444 567778888887755 578888887773221 2 3467778887 8999999775432 222 45567
Q ss_pred HHHHHcCCCcccEEEEEE
Q 020306 263 NLVKECGVENKQIKVISA 280 (328)
Q Consensus 263 ~~L~~~Ga~~~~I~vv~~ 280 (328)
+.|++.|+ ++|.++..
T Consensus 81 ~alr~~~a--~~i~~ViP 96 (332)
T PRK00553 81 DALKRGSA--KSITAILP 96 (332)
T ss_pred HHHHHcCC--CeEEEEee
Confidence 78889998 47777665
No 98
>COG3933 Transcriptional antiterminator [Transcription]
Probab=33.07 E-value=1.2e+02 Score=31.73 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=42.2
Q ss_pred CCCCEEEEEcCcccch-HHHHHHHHHHHHcCCCc--ccEEEEEE---eeChhHHHHHHHhCCCcEEEEeEeCCCCCCC
Q 020306 240 PEGSRIFVVDPMLATG-GTVVAALNLVKECGVEN--KQIKVISA---VAAPPALQKLSENFHGLHVYTGIIDPTVNDK 311 (328)
Q Consensus 240 ~~g~~VlLvDd~LATG-gTl~aai~~L~~~Ga~~--~~I~vv~~---vas~~Gi~~L~~~fP~v~IvtaaID~~Lde~ 311 (328)
++++++++. .++|| ||+.+--++|.+ +... ..+++++. +.+.+-++.+.++| ++--.++++|+++++-
T Consensus 238 ~~~~kAlvt--tC~TG~GtA~klk~~l~~-~~~~~~d~~iv~~~~~~~~~~~~~~ql~~ey-eiLaiVGt~dp~l~~i 311 (470)
T COG3933 238 KNKKKALVT--TCITGEGTAEKLKKVLEE-IIDTDLDIIIVACDYNKLASLERIEQLLEEY-EILAIVGTFDPKLADI 311 (470)
T ss_pred ccCCcEEEE--EeccCCcHHHHHHHHHHh-cccccccceeeeeehhHHHHHHHHHHHHHhh-chheeeeccCCCCCCC
Confidence 345677765 57888 666665555554 4321 12233333 55666677777776 6666899999998853
No 99
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=32.79 E-value=3.2e+02 Score=28.37 Aligned_cols=85 Identities=11% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-h---HHHHHHH
Q 020306 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-G---GTVVAAL 262 (328)
Q Consensus 187 ~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-G---gTl~aai 262 (328)
+++++++ ..+...+.+.+.+.+ +.+.|.+...|=.. +| .|.+++.++. |+.|+|+-++-.. - --+...+
T Consensus 118 ~~m~I~s-gs~~~~LA~~IA~~L-g~~l~~~~~~rFpD-GE---~~Vri~e~Vr-G~dV~IVqS~~~pvNd~LmELLlli 190 (439)
T PTZ00145 118 ENAILFS-GSSNPLLSKNIADHL-GTILGRVHLKRFAD-GE---VSMQFLESIR-GKDVYIIQPTCPPVNENLIELLLMI 190 (439)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC-CC---EEEEECCCcC-CCeEEEEecCCCCCcHHHHHHHHHH
Confidence 4455555 677788888888755 57888888877322 11 3466788897 8999999874322 1 2345567
Q ss_pred HHHHHcCCCcccEEEEEE
Q 020306 263 NLVKECGVENKQIKVISA 280 (328)
Q Consensus 263 ~~L~~~Ga~~~~I~vv~~ 280 (328)
+.+++.|| ++|.+|..
T Consensus 191 dAlr~agA--krItlViP 206 (439)
T PTZ00145 191 STCRRASA--KKITAVIP 206 (439)
T ss_pred HHHHHhcc--CeEEEEee
Confidence 78889998 47877765
No 100
>PRK11524 putative methyltransferase; Provisional
Probab=32.52 E-value=30 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.9
Q ss_pred CEEEEEcCcccchHHHHHHHHH
Q 020306 243 SRIFVVDPMLATGGTVVAALNL 264 (328)
Q Consensus 243 ~~VlLvDd~LATGgTl~aai~~ 264 (328)
..=+|+||++.+|.|+.+|.++
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l 229 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS 229 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc
Confidence 4446899999999999999885
No 101
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=30.28 E-value=1e+02 Score=29.21 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=37.4
Q ss_pred ccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHH---hCC--CcEEEEeEeCC
Q 020306 252 LATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSE---NFH--GLHVYTGIIDP 306 (328)
Q Consensus 252 LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~---~fP--~v~IvtaaID~ 306 (328)
+.|.+|+..|...+.+... .=|.+=+.+.-..|++-|.+ .+. ||-++||+=|-
T Consensus 29 vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~ 86 (224)
T COG4565 29 VGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDM 86 (224)
T ss_pred EEeeccHHHHHHHHHhhCC--CEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchH
Confidence 4577888999999998775 23444455888889887665 333 77788887654
No 102
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=30.04 E-value=91 Score=27.32 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=32.2
Q ss_pred CcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHh
Q 020306 250 PMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293 (328)
Q Consensus 250 d~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~ 293 (328)
|...+...+..|.+.|+..|++ +| |.+-....+|+++|.+.
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~--~i-f~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVK--EI-FEVSAVTGEGIEELKDY 140 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCC--Ce-EEEECCCCcCHHHHHHH
Confidence 4444678899999999999985 67 55556679999999764
No 103
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=29.82 E-value=1.7e+02 Score=27.35 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=36.1
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE---eeChhHHHHHHHhCCCcEEEEeE
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA---VAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~---vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
++.++||||-- ....++.|++.|..+.. ++.. -.=-.|+..+.++||+++||...
T Consensus 21 ~~~~ilIDpg~-----~~~vl~~l~~~g~~l~~--IllTH~H~DHigG~~~l~~~~~~~~V~~~~ 78 (251)
T PRK10241 21 AGRCLIVDPGE-----AEPVLNAIAENNWQPEA--IFLTHHHHDHVGGVKELVEKFPQIVVYGPQ 78 (251)
T ss_pred CCcEEEECCCC-----hHHHHHHHHHcCCccCE--EEeCCCCchhhccHHHHHHHCCCCEEEecc
Confidence 35789999853 34567778888865432 1221 11126888999999999998754
No 104
>PLN02962 hydroxyacylglutathione hydrolase
Probab=29.09 E-value=1.7e+02 Score=27.62 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=37.3
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE---eeChhHHHHHHHhCCCcEEEEeEe
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA---VAAPPALQKLSENFHGLHVYTGII 304 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~---vas~~Gi~~L~~~fP~v~IvtaaI 304 (328)
++.++||||.-. .....++.+++.|.+.+ .++.. ..--.|...|.+++|+++++....
T Consensus 35 ~~~avlIDP~~~---~~~~~l~~l~~~g~~i~--~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~ 95 (251)
T PLN02962 35 DKPALLIDPVDK---TVDRDLSLVKELGLKLI--YAMNTHVHADHVTGTGLLKTKLPGVKSIISKA 95 (251)
T ss_pred CCEEEEECCCCC---cHHHHHHHHHHCCCeeE--EEEcCCCCchhHHHHHHHHHHCCCCeEEeccc
Confidence 468999999422 23344678888886431 22222 233467888888899988887543
No 105
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=28.64 E-value=4.6e+02 Score=25.40 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=49.3
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEE-cCcccc-h---HHHHHHHHHHHHcC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVV-DPMLAT-G---GTVVAALNLVKECG 269 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLv-Dd~LAT-G---gTl~aai~~L~~~G 269 (328)
..+...+.+++.+.+ +.+.+.+...+=.. + ..|.++++++. |+.|+|+ -.+-.. - --+...++.+++.|
T Consensus 6 ~~~~~~la~~ia~~l-g~~~~~~~~~~Fpd-G---E~~v~i~~~v~-g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~g 79 (308)
T TIGR01251 6 GSSNQELAQKVAKNL-GLPLGDVEVKRFPD-G---ELYVRINESVR-GKDVFIIQQSTSAPVNDNLMELLIMIDALKRAS 79 (308)
T ss_pred CCCCHHHHHHHHHHh-CCeeeeeEEEECCC-C---CEEEEECCCCC-CCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcC
Confidence 345566777777744 46777766665221 1 23467778887 8899998 554311 1 24556677888999
Q ss_pred CCcccEEEEEE
Q 020306 270 VENKQIKVISA 280 (328)
Q Consensus 270 a~~~~I~vv~~ 280 (328)
+ ++|.++..
T Consensus 80 a--~~i~~v~P 88 (308)
T TIGR01251 80 A--KSITAVIP 88 (308)
T ss_pred C--CeEEEEEE
Confidence 8 47766665
No 106
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.23 E-value=5.3e+02 Score=25.38 Aligned_cols=85 Identities=11% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-hHH---HHHHH
Q 020306 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-GGT---VVAAL 262 (328)
Q Consensus 187 ~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-GgT---l~aai 262 (328)
+++++++ ..+...+.+.+.+.+ +.+.+.+...+=.. +| .|.+++.++. |+.|+|+-.+-.. -.. +...+
T Consensus 8 ~~~~i~~-~~~~~~la~~ia~~l-g~~l~~~~~~~Fpd-GE---~~v~i~~~v~-g~dV~ii~s~~~~~nd~l~eLll~~ 80 (323)
T PRK02458 8 KQIKLFS-LNSNLEIAEKIAQAA-GVPLGKLSSRQFSD-GE---IMINIEESVR-GDDIYIIQSTSFPVNDHLWELLIMI 80 (323)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC-CC---EEEEecCCcC-CCeEEEEecCCCCCchHHHHHHHHH
Confidence 3455555 577778888887755 57788887776322 11 3567888887 8999998765322 222 34556
Q ss_pred HHHHHcCCCcccEEEEEE
Q 020306 263 NLVKECGVENKQIKVISA 280 (328)
Q Consensus 263 ~~L~~~Ga~~~~I~vv~~ 280 (328)
+.|++.|+ ++|.++..
T Consensus 81 ~alr~~~a--~~i~lViP 96 (323)
T PRK02458 81 DACKRASA--NTVNVVLP 96 (323)
T ss_pred HHHHHcCC--ceEEEEEe
Confidence 77889998 47777765
No 107
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.81 E-value=3.4e+02 Score=26.04 Aligned_cols=78 Identities=10% Similarity=0.229 Sum_probs=51.6
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchH---HHHHHHHHHHHcCCC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGG---TVVAALNLVKECGVE 271 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGg---Tl~aai~~L~~~Ga~ 271 (328)
..+...+.+.+.+.+ +.+.+.+...+-..- | .|.+++.++. |++|+|+-..-.-.. -+...++.|++.|+
T Consensus 5 ~~~~~~la~~ia~~l-~~~~~~~~~~~FpdG-E---~~v~i~~~v~-g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga- 77 (285)
T PRK00934 5 GSASQLLASEVARLL-NTELALVETKRFPDG-E---LYVRILGEID-GEDVVIISTTYPQDENLVELLLLIDALRDEGA- 77 (285)
T ss_pred CCCCHHHHHHHHHHH-CCceEeeEEEECCCC-C---EEEEECCCcC-CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC-
Confidence 355667888887744 678888887774321 1 3466778887 899999876432122 24556778889998
Q ss_pred cccEEEEEE
Q 020306 272 NKQIKVISA 280 (328)
Q Consensus 272 ~~~I~vv~~ 280 (328)
++|.++..
T Consensus 78 -~~i~~v~P 85 (285)
T PRK00934 78 -KSITLVIP 85 (285)
T ss_pred -CeEEEEec
Confidence 47776655
No 108
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.45 E-value=5.3e+02 Score=25.02 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchH---HHHHHHHHHHHcCCC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGG---TVVAALNLVKECGVE 271 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGg---Tl~aai~~L~~~Ga~ 271 (328)
..+...|.+.+.+.+ +.+.+.+.+.+=.. + ..|.++++++. |+.|+|+-.+-.--. -+...++.|++.|+
T Consensus 8 ~~~~~~la~~ia~~l-g~~~~~~~~~~F~d-G---E~~v~i~~~v~-g~~V~ivqs~~~~n~~l~elll~~~alr~~~a- 80 (301)
T PRK07199 8 LPGNEAAAGRLAAAL-GVEVGRIELHRFPD-G---ESYVRLDSPVA-GRTVVLVCSLDRPDEKLLPLLFAAEAARELGA- 80 (301)
T ss_pred CCCCHHHHHHHHHHh-CCceeeeEEEECCC-C---CEEEEECCCCC-CCEEEEECCCCCCcHHHHHHHHHHHHHHHcCC-
Confidence 355667777777755 57777777766321 1 12456677887 899999988654222 34556678889998
Q ss_pred cccEEEEEE
Q 020306 272 NKQIKVISA 280 (328)
Q Consensus 272 ~~~I~vv~~ 280 (328)
++|.++..
T Consensus 81 -~~i~~ViP 88 (301)
T PRK07199 81 -RRVGLVAP 88 (301)
T ss_pred -CeEEEEee
Confidence 47776655
No 109
>PRK13699 putative methylase; Provisional
Probab=25.76 E-value=46 Score=30.90 Aligned_cols=19 Identities=47% Similarity=0.723 Sum_probs=17.5
Q ss_pred EEEcCcccchHHHHHHHHH
Q 020306 246 FVVDPMLATGGTVVAALNL 264 (328)
Q Consensus 246 lLvDd~LATGgTl~aai~~ 264 (328)
+|+||+..+|.|+.+|.+.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~ 184 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS 184 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc
Confidence 7999999999999999874
No 110
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=25.73 E-value=1.5e+02 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEE
Q 020306 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKV 277 (328)
Q Consensus 241 ~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~v 277 (328)
+++.|+++++- |.....+...|++.|. .++.+
T Consensus 49 ~~~~vv~~c~~---~~~a~~~~~~l~~~G~--~~v~~ 80 (89)
T cd00158 49 KDKPIVVYCRS---GNRSARAAKLLRKAGG--TNVYN 80 (89)
T ss_pred CCCeEEEEeCC---CchHHHHHHHHHHhCc--ccEEE
Confidence 46888888875 7888999999999995 35443
No 111
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.69 E-value=1.5e+02 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHcCCCcccEEEEEEeeChh---HHHHHHHhCCCcEEEEeEeCC
Q 020306 254 TGGTVVAALNLVKECGVENKQIKVISAVAAPP---ALQKLSENFHGLHVYTGIIDP 306 (328)
Q Consensus 254 TGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~---Gi~~L~~~fP~v~IvtaaID~ 306 (328)
+-..+....+.|.+.|++.-+|. +.+++ .++++.++||++.|-+++|=.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEit----l~~~~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVT----LRTPAALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe----cCCccHHHHHHHHHHHCCCCEEEEeeccC
Confidence 55778888889999998644444 34444 466777789999888888744
No 112
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=23.06 E-value=3.6e+02 Score=20.89 Aligned_cols=48 Identities=29% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeCh-hHHHHHHHh-CCCc
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAP-PALQKLSEN-FHGL 297 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~-~Gi~~L~~~-fP~v 297 (328)
..+|+++|| ........-+.|.+.|. .+...-... ++++.+.+. .|++
T Consensus 5 ~~~vLivdD---~~~~~~~~~~~l~~~g~-----~v~~a~~g~~~al~~~~~~~~~dl 54 (130)
T COG0784 5 GLRVLVVDD---EPVNRRLLKRLLEDLGY-----EVVEAADGEEEALELLRELPQPDL 54 (130)
T ss_pred CcEEEEEcC---CHHHHHHHHHHHHHcCC-----eEEEeCChHHHHHHHHHhCCCCCE
Confidence 579999999 33334444445666772 223333443 677777665 3565
No 113
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=22.85 E-value=1.6e+02 Score=22.57 Aligned_cols=32 Identities=9% Similarity=0.001 Sum_probs=24.2
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEE
Q 020306 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKV 277 (328)
Q Consensus 241 ~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~v 277 (328)
+++.|+++++ +|.....+...|++.|.+ ++.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~--~v~~ 86 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGK--PVAL 86 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCC--CEEE
Confidence 3678888875 778888888889999974 5544
No 114
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.83 E-value=6.3e+02 Score=24.61 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccc-hH---HHHHHHHHHHHcCC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLAT-GG---TVVAALNLVKECGV 270 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LAT-Gg---Tl~aai~~L~~~Ga 270 (328)
..+...+.+.+.+.+ +.+.+.+...+=.. + ..|.++++++. |++|+|+=.+-.. -. -+...++.+++.|+
T Consensus 6 ~~~~~~la~~ia~~l-g~~~~~~~~~~Fpd-G---E~~vri~~~v~-g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga 79 (309)
T PRK01259 6 GNANPELAEKIAKYL-GIPLGKASVGRFSD-G---EISVEINENVR-GKDVFIIQSTCAPTNDNLMELLIMIDALKRASA 79 (309)
T ss_pred CCCCHHHHHHHHHHh-CCceeeeEEEECCC-C---CEEEEeCCCCC-CCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 345556777776644 56667666665221 1 23466778887 8999999654222 11 24567778889998
Q ss_pred CcccEEEEEE
Q 020306 271 ENKQIKVISA 280 (328)
Q Consensus 271 ~~~~I~vv~~ 280 (328)
++|.++..
T Consensus 80 --~~i~lViP 87 (309)
T PRK01259 80 --GRITAVIP 87 (309)
T ss_pred --ceEEEEee
Confidence 47777665
No 115
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=22.73 E-value=1.3e+02 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.6
Q ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHcCCC
Q 020306 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVE 271 (328)
Q Consensus 241 ~g~~VlLvDd~LATGgTl~aai~~L~~~Ga~ 271 (328)
+++.+++++. +|.....+...|++.|..
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCc
Confidence 3678888877 888999999999999973
No 116
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.72 E-value=1.6e+02 Score=30.25 Aligned_cols=60 Identities=13% Similarity=0.282 Sum_probs=35.8
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEE-----eeChhHHHHHHHhCCCcEEEEeEeCC
Q 020306 244 RIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA-----VAAPPALQKLSENFHGLHVYTGIIDP 306 (328)
Q Consensus 244 ~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~-----vas~~Gi~~L~~~fP~v~IvtaaID~ 306 (328)
.-++|+--+.++.....-++.|.+.|+. ++.+.. ....+-++++.+.||++.|+++.+-.
T Consensus 211 g~l~V~aav~~~~~~~~r~~~L~~aG~d---~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t 275 (450)
T TIGR01302 211 GRLIVGAAVGTREFDKERAEALVKAGVD---VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT 275 (450)
T ss_pred CCEEEEEEecCchhHHHHHHHHHHhCCC---EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 3467776666655444455567777763 333322 12234477777788888888776654
No 117
>cd00606 fungal_RNase fungal type ribonuclease. Ribonucleases (RNAses) cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. The members of this CD belong to the superfamily of microbial ribonucleases which are predominantly guanyl specific nucleases. Guanyl specific RNAses are endonucleases which split RNA phosphodiester bonds at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate. The alignment also contains ribotoxins, a fungal group of cytotoxins, specifically cleaving the sarcin/ricin loop (SRL) structure of the 23-28S rRNA and therefore being very potent inhibitors of protein synthesis.
Probab=22.49 E-value=45 Score=27.71 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=12.7
Q ss_pred CCCCccccc-cCCcccCCC
Q 020306 4 PWNEYPILS-HGNHISQTP 21 (328)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~ 21 (328)
||-||||++ ++--..+.|
T Consensus 51 ~~~EfPi~~~g~~Y~ggsP 69 (100)
T cd00606 51 PYYEFPIFSDGHVYTGGSP 69 (100)
T ss_pred ceEEEeEecCCCeecCCCC
Confidence 899999999 544444444
No 118
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=22.37 E-value=7.7e+02 Score=24.44 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=57.5
Q ss_pred CCeeEEEEcCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchHHH---HHHHH
Q 020306 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTV---VAALN 263 (328)
Q Consensus 187 ~~i~iVsILRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGgTl---~aai~ 263 (328)
+++.+++ ..+...+.+++.+.+-+.+.+.+++.+-..- |. ..+.+++.++. |++|+|+=.+-.- ..+ .-+++
T Consensus 15 ~~~~i~~-g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDG-E~-~v~v~~~~~vr-g~~V~ivqs~~~p-d~lmELLl~~d 89 (326)
T PLN02297 15 KQVHLFY-CEETEELARKIAAESDAIELGSINWRKFPDG-FP-NLFINNAHGIR-GQHVAFLASFSSP-AVIFEQLSVIY 89 (326)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhCCCceeeeEEEECCCC-CE-EEEEcCCCCcC-CCeEEEECCCCCC-hHHHHHHHHHH
Confidence 4555555 6777889999888544678888888773322 21 22345567887 8999998775433 333 34556
Q ss_pred HHHHcCCCcccEEEEEE
Q 020306 264 LVKECGVENKQIKVISA 280 (328)
Q Consensus 264 ~L~~~Ga~~~~I~vv~~ 280 (328)
.|++.|+ ++|.+|..
T Consensus 90 Alr~~ga--~~i~~ViP 104 (326)
T PLN02297 90 ALPKLFV--ASFTLVLP 104 (326)
T ss_pred HHHHcCC--CEEEEEee
Confidence 7788898 47877776
No 119
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=22.31 E-value=1.6e+02 Score=25.96 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=38.9
Q ss_pred EEEEE-cCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeEeC
Q 020306 244 RIFVV-DPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGIID 305 (328)
Q Consensus 244 ~VlLv-Dd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~IvtaaID 305 (328)
-++|| ||-. +=.=+.+=.+.|++.|| +-+|+-+.+.+++++|.+..|++.+.=+.-|
T Consensus 64 plFlVGdD~~-S~~WL~~~~~~L~~l~A----vGlVVNV~t~~~L~~Lr~lapgl~l~P~sgd 121 (142)
T PF11072_consen 64 PLFLVGDDPL-SRQWLQQNAEELKQLGA----VGLVVNVATEAALQRLRQLAPGLPLLPVSGD 121 (142)
T ss_pred CEEEEcCCHH-HHHHHHHHHHHHHHCCC----eEEEEecCCHHHHHHHHHHcCCCeecCCCHH
Confidence 34444 5533 22334455567778886 6788889999999999998888887655443
No 120
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=21.71 E-value=3.6e+02 Score=26.81 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=55.3
Q ss_pred cCcChHHHHHHhccCCCCeeEEEEEeecCCcccceeeecCCCCCCCCCCEEEEEcCcccchH-H---HHHHHHHHHHcCC
Q 020306 195 LRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGG-T---VVAALNLVKECGV 270 (328)
Q Consensus 195 LRaGl~m~~~lr~~lP~a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~VlLvDd~LATGg-T---l~aai~~L~~~Ga 270 (328)
+.+.-.+.+++.+.+ +.+.|..++.|-... ..|.++.+++. |++|+|+...-.... . +.-.++.+++.||
T Consensus 10 g~s~~~La~~ia~~l-~~~l~~~~~~rF~DG----E~~V~i~EsVr-g~dVfI~qs~~~pvnd~lmELLi~idA~k~asA 83 (314)
T COG0462 10 GSSNPELAEKIAKRL-GIPLGKVEVKRFPDG----EIYVRIEESVR-GKDVFIIQSTSPPVNDNLMELLIMIDALKRASA 83 (314)
T ss_pred CCCCHHHHHHHHHHh-CCCcccceeEEcCCC----cEEEEeccccc-CCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC
Confidence 466777888888744 577787777773221 12467788998 899999999888554 2 3445678888888
Q ss_pred CcccEEEEEE
Q 020306 271 ENKQIKVISA 280 (328)
Q Consensus 271 ~~~~I~vv~~ 280 (328)
++|.+|..
T Consensus 84 --~~It~ViP 91 (314)
T COG0462 84 --KRITAVIP 91 (314)
T ss_pred --ceEEEEee
Confidence 47877766
No 121
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.62 E-value=1.4e+02 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHh
Q 020306 253 ATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSEN 293 (328)
Q Consensus 253 ATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~ 293 (328)
.|...+..+|+-|+..|...++|++++- ..+-.+.|.+.
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~--d~~~~~~l~~~ 45 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAK--DKDRTERLADQ 45 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEc--CchHHHHHHHh
Confidence 4678899999999999999899887763 45566777665
No 122
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.47 E-value=1.2e+02 Score=30.02 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCEEEEEcCcccchHHHHHHH---HHHHHcCCCcccEEEEEEeeC-hhHHHHHHHhCCCcEEEEeEeCCCCCCCCccccC
Q 020306 242 GSRIFVVDPMLATGGTVVAAL---NLVKECGVENKQIKVISAVAA-PPALQKLSENFHGLHVYTGIIDPTVNDKGFIVPG 317 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai---~~L~~~Ga~~~~I~vv~~vas-~~Gi~~L~~~fP~v~IvtaaID~~Lde~gyIvPG 317 (328)
|.++.| +|||-.+..|+ +.|++.|....=|.+-++-.. .+.+.+..++ --.|+|+ |+..|+-|
T Consensus 192 G~D~ti----iA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~--t~~IvT~-------EeHsi~GG 258 (312)
T COG3958 192 GSDLTI----IATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARE--TGRIVTA-------EEHSIIGG 258 (312)
T ss_pred CCceEE----EecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhh--cCcEEEE-------ecceeecc
Confidence 455554 56675544444 577888864221222222111 2334444443 2358887 67889999
Q ss_pred cccHhHh
Q 020306 318 LGDAGDR 324 (328)
Q Consensus 318 LGDaGDR 324 (328)
||.+.--
T Consensus 259 lGsaVAE 265 (312)
T COG3958 259 LGSAVAE 265 (312)
T ss_pred hhHHHHH
Confidence 9988643
No 123
>PLN02160 thiosulfate sulfurtransferase
Probab=21.24 E-value=2.5e+02 Score=23.73 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=35.4
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEeE
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTGI 303 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivtaa 303 (328)
++.|+++ +++|.....|.+.|++.|.. +++.+ .+|+....++ +.++.++.
T Consensus 81 ~~~Iivy---C~sG~RS~~Aa~~L~~~G~~--~v~~l-----~GG~~~W~~~--g~p~~~~~ 130 (136)
T PLN02160 81 ADDILVG---CQSGARSLKATTELVAAGYK--KVRNK-----GGGYLAWVDH--SFPINQEE 130 (136)
T ss_pred CCcEEEE---CCCcHHHHHHHHHHHHcCCC--Ceeec-----CCcHHHHhhC--CCCccccc
Confidence 5667766 57999999999999999973 44322 4788877765 45555543
No 124
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.11 E-value=7.3e+02 Score=25.19 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=50.5
Q ss_pred CeeEEEEcCcChHHHHHHhccC---------------C----C--CeeEEEEEeecCCcccceeeecCCCCCCCCCCEEE
Q 020306 188 PVAVIPILRAGLVLVEHASSIL---------------P----A--IKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIF 246 (328)
Q Consensus 188 ~i~iVsILRaGl~m~~~lr~~l---------------P----~--a~~g~I~i~Rd~~t~e~~~yy~kLP~dI~~g~~Vl 246 (328)
++.+++ +.++..+.+++.+.+ . + .+.+.+.+.+-.. + ..|.+++.++. |++|+
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpD-G---E~~vri~~~Vr-g~dV~ 81 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSN-G---EAKGEILESVR-GKDIY 81 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCC-C---CEEEEECCCCC-CCeEE
Confidence 344555 567777776665544 1 2 2255555544211 1 23567788887 89999
Q ss_pred EEcCccc---------------chHHH---HHHHHHHHHcCCCcccEEEEEE
Q 020306 247 VVDPMLA---------------TGGTV---VAALNLVKECGVENKQIKVISA 280 (328)
Q Consensus 247 LvDd~LA---------------TGgTl---~aai~~L~~~Ga~~~~I~vv~~ 280 (328)
|+-++-. .-..+ .-.++.++ .|+ ++|.+|..
T Consensus 82 ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA--~rIt~ViP 130 (382)
T PRK06827 82 ILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKA--RRITVIMP 130 (382)
T ss_pred EEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCC--CeEEEEee
Confidence 9998642 12223 34777888 887 47877765
No 125
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=20.54 E-value=3.5e+02 Score=25.14 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred CEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEE
Q 020306 243 SRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYT 301 (328)
Q Consensus 243 ~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivt 301 (328)
-.+.++|+.- +......+++-+.+.|+ ++++..-....+.+.++.++||+++...
T Consensus 32 v~~~~~e~~~-~~~~~~~~i~~~~~~g~---dlIi~~g~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 32 VEVTYVENVP-EGADAERVLRELAAQGY---DLIFGTSFGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred CeEEEEecCC-chHhHHHHHHHHHHcCC---CEEEECchhhhHHHHHHHHHCCCCEEEE
Confidence 3455566654 45778888898888886 5666666666788889999999887544
No 126
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.37 E-value=2.8e+02 Score=24.56 Aligned_cols=49 Identities=10% Similarity=0.257 Sum_probs=31.6
Q ss_pred CEEEEEcCcccch-HHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhC
Q 020306 243 SRIFVVDPMLATG-GTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENF 294 (328)
Q Consensus 243 ~~VlLvDd~LATG-gTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~f 294 (328)
+.|||++|.-..+ +.+.++.+.+++.|+ .|.++.+=...+-++++.++-
T Consensus 109 ~iiil~sd~~~~~~~~~~~~~~~l~~~~I---~v~~IgiG~~~~~L~~ia~~t 158 (183)
T cd01453 109 EVLIIFSSLSTCDPGNIYETIDKLKKENI---RVSVIGLSAEMHICKEICKAT 158 (183)
T ss_pred EEEEEEcCCCcCChhhHHHHHHHHHHcCc---EEEEEEechHHHHHHHHHHHh
Confidence 4677777755432 356678889999886 466666633334477777763
No 127
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=20.30 E-value=2.4e+02 Score=26.04 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCEEEEEcCcccchHHHHHHHHHHHHcCCCcccEEEEEEeeChhHHHHHHHhCCCcEEEEe
Q 020306 242 GSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVYTG 302 (328)
Q Consensus 242 g~~VlLvDd~LATGgTl~aai~~L~~~Ga~~~~I~vv~~vas~~Gi~~L~~~fP~v~Ivta 302 (328)
...++|||+.--+-..-..++++|+..|. +++.++.- ...+.+.+-....|++.++..
T Consensus 119 ~~~l~Vvd~~~~~~~KTk~~~~~l~~lg~--~~~Lii~~-~~~~n~~~a~rNi~~v~v~~~ 176 (205)
T PRK05319 119 EGRLVVVDDLSLEAPKTKELAAKLKNLGL--KKVLIVTD-EVDENLYLSARNLPNVDVLPA 176 (205)
T ss_pred cCCeEEEeccccCCCCHHHHHHHHHHcCC--CceEEEEC-CCchHHHHHHhCCCCcEEEec
Confidence 35789999986455667788999999996 34544432 235667777777888887654
Done!