RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020306
(328 letters)
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 214 bits (546), Expect = 7e-70
Identities = 83/212 (39%), Positives = 130/212 (61%), Gaps = 5/212 (2%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M + + HPL++H ++ LR+++T FR E+ L+ YEA RD L +++P+
Sbjct: 1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRD-LELEETTVETPIA 59
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLP 236
A V+ + ++ ++ ILRAGLV+VE ++P + H+G+ RD E+L P Y KLP
Sbjct: 60 PARVKVLSGKKLA-LVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLP 118
Query: 237 EKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHG 296
E R F++DPMLATGG+ AL+L+KE G +K+++ +AAP L++++++
Sbjct: 119 PDIAE-RRAFLLDPMLATGGSASLALSLLKERG--ATGVKLMAILAAPEGLERIAKDHPD 175
Query: 297 LHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328
V ID +ND G+IVPGLGDAGDR +GT
Sbjct: 176 TEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 213 bits (543), Expect = 2e-69
Identities = 85/210 (40%), Positives = 130/210 (61%), Gaps = 5/210 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
V+V HPLI+H ++ +R++ T FR + E+ L+ +E +RD LP EI++P+ A
Sbjct: 3 VYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRD-LPLEEVEIETPVSKA 61
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
+ I + + VIPILRAG+ +V+ ++PA K H+G+ RD +TL+P Y KLP
Sbjct: 62 RAKVIAGK-KLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSD 120
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLH 298
E +VDPMLATGG+ VAA++ +K+ G ++ IK + +AAP ++ + +
Sbjct: 121 -VEERDFIIVDPMLATGGSAVAAIDALKKRGAKS--IKFMCLIAAPEGVKAVETAHPDVD 177
Query: 299 VYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328
+Y +D +ND G+IVPGLGDAGDR FGT
Sbjct: 178 IYIAALDERLNDHGYIVPGLGDAGDRLFGT 207
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 211 bits (538), Expect = 1e-68
Identities = 82/210 (39%), Positives = 127/210 (60%), Gaps = 5/210 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+ V HPLIKH ++I+R++ T FR + E+ LL YEA+R L E+++P+
Sbjct: 5 LVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATR-HLKCEEVEVETPITKT 63
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEK 238
I+ ++ V V PILRAGLV+ + +LP H+GI RD ETLQ Y KLP
Sbjct: 64 IGYRINDKDIVVV-PILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPL 122
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLH 298
+ +F++DPMLATG + + A+ ++KE G K+I +++ +AAP ++ + + + +
Sbjct: 123 NDDK-EVFLLDPMLATGVSSIKAIEILKENG--AKKITLVALIAAPEGVEAVEKKYEDVK 179
Query: 299 VYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328
+Y +D +ND G+I+PGLGDAGDR F T
Sbjct: 180 IYVAALDERLNDHGYIIPGLGDAGDRLFRT 209
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 211 bits (538), Expect = 2e-68
Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 3/211 (1%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
+V + ++ ++I+R+++TP F L RLL+ EA + P E+ +P+ V
Sbjct: 16 VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNEL-PFQKKEVTTPLDV 74
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPE 237
S + + + I+RAG + ++ ++ + I RDE T +P + KLP
Sbjct: 75 -SYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPA 133
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGL 297
+ ++DPM AT G+V A+ ++ GV+ ++I ++ +AAP ++++ + + +
Sbjct: 134 -DIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKV 192
Query: 298 HVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 328
+ T +D +N + +IVPG+GD GDR FGT
Sbjct: 193 RMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 206 bits (525), Expect = 1e-66
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 11/217 (5%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
++V P+ H ++ LR++ T FR + LGR+L YE S E+++P+GV
Sbjct: 2 LYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTL-DYEIVEVETPLGVK 60
Query: 179 SVE-FIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDE-------ETLQPSI 230
+ I + +I ILRA + LVE P + +G SR E + + I
Sbjct: 61 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 120
Query: 231 YLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKL 290
Y K+P+ + + + DPM+AT T++ L V + K+I ++S +++ + K+
Sbjct: 121 YYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKI 178
Query: 291 SENFHGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFG 327
+ ++++T IDP +N+KG+I+PGLGDAGDR+FG
Sbjct: 179 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 59.0 bits (142), Expect = 8e-11
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 229 SIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQ 288
+ +GSR+ ++D +LATGGT ++ L LV+ ++ I ++ A +
Sbjct: 125 PEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAE 184
Query: 289 KLSE---------NFHGLHVYTGIIDPTVND-KGFIVPGLGDAGDR 324
K+ F L + + D K + P + GD
Sbjct: 185 KIHSTANSRYKDIKFISLLSDDALTEENCGDSKNYTGPRVLSCGDV 230
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 45.5 bits (107), Expect = 2e-06
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 221 RDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISA 280
RD + Y P+ +G + +VD +ATG ++ AAL++V + G +++ V
Sbjct: 99 RDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVP 156
Query: 281 VAAPPALQKLSE 292
VA+P A+++L
Sbjct: 157 VASPEAVERLKA 168
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 43.2 bits (101), Expect = 9e-06
Identities = 24/140 (17%), Positives = 44/140 (31%)
Query: 158 EASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHL 217
+ + ++ +++I E + L L + A K
Sbjct: 38 GLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGE 97
Query: 218 GISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKV 277
E S P GS + +VD ++ATGG+ AA LV++ +
Sbjct: 98 CFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNF 157
Query: 278 ISAVAAPPALQKLSENFHGL 297
+ + KL+ L
Sbjct: 158 VMELDFLKGRSKLNAPVFTL 177
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 43.1 bits (101), Expect = 1e-05
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 210 PAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECG 269
+ + Q + + + + + D +LATGGT++AA+ L + G
Sbjct: 84 AGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAG 143
Query: 270 VENKQIKVISAVAAP--PALQKLSENFHGLHVYT 301
V+ + I + +K+ + +++
Sbjct: 144 VKPENIYINVLYEIEALKGREKVGQ--KCTRLFS 175
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 41.5 bits (97), Expect = 4e-05
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 14/144 (9%)
Query: 170 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSIL-----PAIKTYHLGISRDEE 224
+ +G ++ I +G+ L A K L ++ +
Sbjct: 33 LLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLL 92
Query: 225 TLQPSIYLNKLPEK-------FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKV 277
T + + + + + ++D LA G +++VK+ G I +
Sbjct: 93 TASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGI 152
Query: 278 ISAVAAPPALQKLSENFHGLHVYT 301
+ + P +L + G V +
Sbjct: 153 VIEKSFQPGRDELVK--LGYRVES 174
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 39.6 bits (92), Expect = 1e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
G R+ VVD +LATGGT+ AA L+ E + +
Sbjct: 115 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 154
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 38.1 bits (88), Expect = 4e-04
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 238 KFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
+ R+ +V ++A+G T+ A +V G +
Sbjct: 115 EKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAV 155
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 35.8 bits (82), Expect = 0.004
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 239 FPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVI 278
GS + ++D + GGT+ +NL+ E I V+
Sbjct: 119 MKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVL 158
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 33.8 bits (77), Expect = 0.017
Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 181 EFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYH----LGISRDEETLQPSI-YLNKL 235
+ D EPV ++ +L + AS + + + + +S + T Q S+ + +
Sbjct: 55 YYKDVAEPVTLVALLTGAYLY---ASLLTVHLTFPYTLHFVKVSSYKGTRQESVVFDEED 111
Query: 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFH 295
++ E + ++D + +G T+ + +K + + +K + A+ AL +
Sbjct: 112 LKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKDVDAIKKHSALADTKMFYG 171
Query: 296 GLHV 299
+
Sbjct: 172 YTPM 175
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 32.4 bits (73), Expect = 0.039
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 241 EGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFHGLHVY 300
G +VD ++ + VAA ++KE G + + + A + + E+ V
Sbjct: 82 GGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVV 141
Query: 301 TGIIDPTVNDKGF 313
T + V
Sbjct: 142 TNTVPHEVQKLQC 154
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 31.2 bits (70), Expect = 0.076
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIF 246
+ +I + R GLV + L + IS + Q + + K E +G
Sbjct: 26 QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEG--DGEGFI 83
Query: 247 VVDPMLATGGTVVAALNLVKECGV 270
V+D ++ TGGT VA + +
Sbjct: 84 VIDDLVDTGGTAVAIREMYPKAHF 107
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 29.6 bits (65), Expect = 0.59
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 232 LNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKEC--GVENKQIKVISAVAAPPALQK 289
+ L E+ P +R+ + GG V ++ + ++ + + PA +
Sbjct: 22 IAGLREQIPHDARVLIT-----YGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYET 76
Query: 290 LSENFHGLHVYTGIIDPTVNDKGFIVPGLGDA 321
L V + + G V
Sbjct: 77 LMNAVK--LVREQKVTFLLAVGGGSVLDGTKF 106
>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (61), Expect = 1.4
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 170 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGI---------S 220
+I + D V ++ I G+ L + + H+G
Sbjct: 21 QIIEKTALDDPVGPDAPRVV-LLGIPTRGVTLANRLAGNITEYSGIHVGHGALDITLYRD 79
Query: 221 RDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKV 277
+ +P + + + +VD +L +G +V +AL+ +++ G + +++
Sbjct: 80 DLMIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVG-RPRAVQL 135
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 26.6 bits (58), Expect = 3.0
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNK-----------L 235
++ I G+ L + + + I+ + + + TL K
Sbjct: 30 NNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGAD 89
Query: 236 PEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAV 281
++ +VD +L TG TV A ++ + + G + + AV
Sbjct: 90 IPVDITDQKVILVDDVLYTGRTVRAGMDALVDVG---RPSSIQLAV 132
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
{Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 25.6 bits (56), Expect = 3.7
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 28 PESDTIGCMACNINISIR---CSTDTPRFAATCQLQLDSRNPRSPLLL 72
P + I C+ C + + TC DS N R+ +LL
Sbjct: 25 PSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILL 72
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 196
Score = 26.2 bits (57), Expect = 5.1
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 36 MACNINISIRCSTDTPRFAATCQLQLDSRNPRSPLLLKLLPSPALTQRPNKIAYSSYTPR 95
M C + I ++ +LD R+ S L L++ + + Y+ PR
Sbjct: 35 MGCLVPIQVK-------------WKLDKRHFNSNLSLRI--RFVKYDKKENVEYAIRNPR 79
Query: 96 RSYVTVRSHMATEEK 110
+ RSH E+
Sbjct: 80 SDVMKCRSHTEREQH 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,213,476
Number of extensions: 55421
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 22
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)