BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020307
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 222
G +D+ G G S AK +S + ALDFS++ I N L + +V+ D
Sbjct: 45 GTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADAN--LNDRIQIVQGD 101
Query: 223 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTG 281
V +P + D + + ++ W + A EI RIL+SGG ++G F S++
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 282 RVLR------ERILQNYNYLTEEEIEDLCTSCGLTNY 312
+R E +N + E +++ G+++Y
Sbjct: 162 EXIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSY 198
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++DV+ G G + FA VVA D +E++L+ FI+ + + V+ D
Sbjct: 41 VLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAE 95
Query: 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
+ PF V A H +P+P++ V+E R+L+ GG
Sbjct: 96 QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 150 GPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN 209
G D + G ++D+ CG+G + K A+SG + V+ D + + + +Q+
Sbjct: 46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATXIEKA----RQNY 99
Query: 210 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
L ++A R P +DAV + A LH P A+A I + L+SGG FV
Sbjct: 100 PHLHFDVADARNFRVDKP-----LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 154 EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT 213
E+Y K ++DV CG G + K +++G + V +D SE ++ K
Sbjct: 48 EQYVKKE--AEVLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQ------KGKERGEG 97
Query: 214 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
+L+ ++ D+ LPF + +A+ A +L P A+ EI R+L+S G
Sbjct: 98 PDLSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G +++ CG G + AK+ + + ++D S L + + +++ N+ ++A
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 265
++ LPF D + L SP A+ + ++L+ GG
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTI 138
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G ++DV CG G + + A + V + S + Q + L + + A
Sbjct: 62 GDRVLDVGCGIGKPAVRLATARDVR-VTGISISRPQVNQAN--ARATAAGLANRVTFSYA 118
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271
D LPF DAV A +LH P A+ E +R+LR GG F+
Sbjct: 119 DAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 33/209 (15%)
Query: 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
FSCP+C++PL R+ ++ + C + + +K+ Y++L + +
Sbjct: 3 FSCPLCHQPLSRE-----------KNSYICPQRHQFDXAKEGYVNLLPVQHKRSRDPGDS 51
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFA 180
A R F+ + G Q R E A ++D+ CG G ++ FA
Sbjct: 52 AEXXQARRAFL----DAGHYQPL-RDAIVAQLRERLDDKATA--VLDIGCGEGYYTHAFA 104
Query: 181 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240
+ LD S+ ++ Q + S+ RLPF+ DA+
Sbjct: 105 DALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH--------RLPFSDTSXDAIIRIY 156
Query: 241 ALHCWPSPSNAVAEISRILRSGGVFVGTT 269
A P A E++R+++ GG + T
Sbjct: 157 A------PCKA-EELARVVKPGGWVITAT 178
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 162 GGL-LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
GGL +VD+ CG G F R + G S V+ LD SE L + +T +T R
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARAR--AAGPDTGITYE----R 95
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269
AD+ +L D ++ ALH + + + L GG FV +T
Sbjct: 96 ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 223
+++DV CG+G+ S AK+G V+A+D SE +L Q D I+ + L + L++ +
Sbjct: 48 VVLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIRLNK--LEDTIVLIKGKI 103
Query: 224 CRLPFASGFVDAV 236
+ VD +
Sbjct: 104 EEVSLPVEKVDVI 116
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LA 217
+G +DV GSG+ + FA+ G V+ +D + ++ + +++D+ L S+ +
Sbjct: 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ 136
Query: 218 LVRADVCRLPFA-SGFVDAVHAGAALHCWP 246
LV D R+ +A DA+H GAA P
Sbjct: 137 LVVGD-GRMGYAEEAPYDAIHVGAAAPVVP 165
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 223
+++DV CG+G+ S AK+G V+ +D SE +L Q D I+ + L + L++ +
Sbjct: 67 VVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKI 122
Query: 224 CRLPFASGFVDAV 236
+ VD +
Sbjct: 123 EEVHLPVEKVDVI 135
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 154 EEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 210
EEY + + G++VD CG+G + + + T + +D + L++ + K D+
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKE--KFDSV 62
Query: 211 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
I S D +P S VD + + H + ++E+ RIL+ G
Sbjct: 63 ITLS-------DPKEIPDNS--VDFILFANSFHDMDDKQHVISEVKRILKDDG 106
>pdb|4E71|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of
Plexin B2
Length = 111
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQN 291
+D V+ G CWP P + V E R G + L TS GR R L +
Sbjct: 43 IIDQVYRGQPCSCWPRPDSVVLE----WRPGSTAQILSDLDLTSQRE--GRWKRVNTLMH 96
Query: 292 YN 293
YN
Sbjct: 97 YN 98
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 105 DLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNF 143
DLT + + T V+ S + +PFVSF+ +R W+ N
Sbjct: 73 DLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNL 111
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC 201
L+DV+CG+G F K + L+ SE+ML
Sbjct: 44 LLDVACGTGTHLEHFTKE--FGDTAGLELSEDMLTHA 78
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 290 QNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 327
+N YL EEEI D + G NY +Q++ + Q+
Sbjct: 4 KNGGYLPEEEIPDQPPATGAFNYGEALQKAIFFYECQR 41
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ G+G + F S + +D ++ + F ++ N+ +
Sbjct: 25 VLDIGAGAGHTALAF--SPYVQECIGVDATKEXVEVASSFAQEKGV---ENVRFQQGTAE 79
Query: 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
LPF D + A H + AV E++R+L+ G F+
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,996,179
Number of Sequences: 62578
Number of extensions: 366714
Number of successful extensions: 817
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 24
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)